Query 025335
Match_columns 254
No_of_seqs 228 out of 1382
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 4.7E-35 1.6E-39 262.5 20.4 172 6-235 126-300 (406)
2 4d9s_A UVB-resistance protein 100.0 5.9E-35 2E-39 261.9 19.9 172 6-235 178-352 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 8.3E-35 2.8E-39 259.5 17.4 171 7-235 113-288 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 7.5E-35 2.6E-39 259.8 16.3 172 6-235 164-340 (389)
5 1a12_A RCC1, regulator of chro 100.0 5.2E-34 1.8E-38 256.1 18.3 170 6-235 169-360 (413)
6 1a12_A RCC1, regulator of chro 100.0 2.1E-33 7.3E-38 252.1 18.2 167 7-233 238-412 (413)
7 3mvd_K Regulator of chromosome 100.0 4.8E-32 1.6E-36 243.9 25.2 213 7-235 81-317 (423)
8 3of7_A Regulator of chromosome 100.0 1.2E-32 4.2E-37 251.4 21.4 221 7-235 73-336 (473)
9 3mvd_K Regulator of chromosome 100.0 7.6E-33 2.6E-37 249.1 17.8 168 6-235 29-202 (423)
10 3of7_A Regulator of chromosome 100.0 4.1E-32 1.4E-36 247.9 18.8 166 7-230 263-450 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 6.6E-28 2.3E-32 206.1 14.6 170 7-235 30-202 (282)
12 3qhy_B Beta-lactamase inhibito 99.9 4.7E-27 1.6E-31 200.8 15.1 172 6-236 68-242 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.9 0.0017 5.6E-08 53.4 5.9 68 51-133 310-377 (400)
14 4gbf_A Phikz131; 7-bladed beta 91.1 0.29 9.8E-06 40.3 5.0 34 104-137 309-342 (400)
15 3q7x_A De novo designed beta-t 73.2 24 0.00081 25.6 10.2 101 8-128 13-114 (132)
16 3snv_A Symfoil-4T/permutation 70.1 30 0.001 25.4 11.4 99 7-127 15-116 (143)
17 1k3i_A Galactose oxidase precu 65.4 32 0.0011 31.6 9.6 60 62-130 246-305 (656)
18 2zwa_A Leucine carboxyl methyl 63.8 45 0.0015 31.1 10.2 64 9-78 440-509 (695)
19 3uc1_A DNA gyrase subunit A; D 62.3 69 0.0024 26.8 15.8 113 10-131 53-175 (327)
20 3p6j_A De novo designed beta-t 58.4 52 0.0018 24.1 11.4 65 51-127 73-138 (142)
21 4aow_A Guanine nucleotide-bind 58.2 62 0.0021 25.8 9.2 73 52-128 259-333 (340)
22 1suu_A DNA gyrase subunit A; t 57.8 80 0.0027 26.1 15.4 118 10-137 58-186 (312)
23 2zwa_A Leucine carboxyl methyl 57.8 90 0.0031 29.0 11.2 18 113-130 598-615 (695)
24 2woz_A Kelch repeat and BTB do 46.9 1.1E+02 0.0038 24.6 10.2 17 61-78 151-167 (318)
25 1q1u_A FGF-12, fibrobast growt 43.9 64 0.0022 23.7 6.2 59 9-75 18-76 (144)
26 2qc5_A Streptogramin B lactona 43.4 1.1E+02 0.0039 23.6 10.5 59 12-78 23-81 (300)
27 1nun_A Fibroblast growth facto 43.4 85 0.0029 23.0 6.8 58 10-75 23-80 (145)
28 1zvu_A Topoisomerase IV subuni 42.5 2.2E+02 0.0076 26.7 12.4 119 9-137 513-638 (716)
29 1rwi_B Serine/threonine-protei 41.7 1.1E+02 0.0036 23.5 7.9 59 62-131 195-253 (270)
30 3no0_A DNA gyrase subunit A; D 41.3 1.4E+02 0.0048 24.1 14.1 150 10-237 35-193 (276)
31 1rg8_A Heparin-binding growth 39.0 94 0.0032 22.8 6.5 57 11-75 26-82 (146)
32 3p6i_A De novo designed beta-t 38.4 1.1E+02 0.0037 22.4 6.7 25 51-75 83-107 (142)
33 1gxr_A ESG1, transducin-like e 38.3 1.4E+02 0.0049 23.3 15.0 111 12-131 13-127 (337)
34 1zvt_A Topoisomerase IV subuni 35.8 1.7E+02 0.0057 23.4 10.7 119 10-138 44-169 (256)
35 1bfg_A Basic fibroblast growth 35.2 1.1E+02 0.0038 22.4 6.4 25 50-74 60-84 (146)
36 1xip_A Nucleoporin NUP159; bet 34.6 1.2E+02 0.0042 26.0 7.6 101 13-131 42-154 (388)
37 1k3i_A Galactose oxidase precu 34.1 1.1E+02 0.0037 27.9 7.6 71 61-134 458-533 (656)
38 1suu_A DNA gyrase subunit A; t 32.3 1.6E+02 0.0053 24.3 7.6 122 9-133 7-134 (312)
39 1qql_A Fibroblast growth facto 30.7 81 0.0028 23.0 4.9 58 9-74 18-75 (140)
40 1ihk_A GLIA-activating factor; 29.2 1.6E+02 0.0055 22.3 6.5 57 10-74 36-92 (174)
41 1zi0_A DNA gyrase subunit A; b 29.1 2.4E+02 0.0081 23.1 16.1 115 10-134 53-178 (307)
42 4asc_A Kelch repeat and BTB do 28.4 2.3E+02 0.0077 22.6 10.1 17 61-78 141-157 (315)
43 3dsm_A Uncharacterized protein 28.1 2.4E+02 0.0081 22.8 8.9 28 106-133 165-193 (328)
44 1wp5_A Topoisomerase IV; broke 27.2 2.7E+02 0.0091 23.1 12.4 121 10-138 50-180 (323)
45 1q7f_A NHL, brain tumor CG1071 26.4 2.2E+02 0.0076 21.9 11.9 17 62-78 210-226 (286)
46 3hbw_A Fibroblast growth facto 26.4 1.9E+02 0.0064 22.3 6.5 59 8-74 23-81 (193)
47 3e5z_A Putative gluconolactona 25.4 1.3E+02 0.0044 23.6 5.8 17 62-78 72-88 (296)
48 2qc5_A Streptogramin B lactona 25.0 2.3E+02 0.008 21.7 9.9 17 62-78 107-123 (300)
49 3sfz_A APAF-1, apoptotic pepti 24.9 2.5E+02 0.0084 27.5 8.7 18 112-129 1229-1246(1249)
50 1gxr_A ESG1, transducin-like e 24.6 2.5E+02 0.0085 21.8 10.7 25 104-128 307-333 (337)
51 1ijt_A FGF4, fibroblast growth 24.5 1.9E+02 0.0066 20.5 6.3 56 11-75 15-70 (128)
52 2z2n_A Virginiamycin B lyase; 24.2 2.4E+02 0.0083 21.6 9.6 17 62-78 144-160 (299)
53 1zvt_A Topoisomerase IV subuni 23.7 2.5E+02 0.0086 22.3 7.2 110 11-133 3-115 (256)
54 2z2n_A Virginiamycin B lyase; 23.4 2.5E+02 0.0086 21.5 9.8 17 62-78 102-118 (299)
55 2xn4_A Kelch-like protein 2; s 22.8 2.8E+02 0.0096 21.8 10.3 17 61-78 197-213 (302)
56 2z3g_A Blasticidin-S deaminase 22.3 51 0.0017 23.7 2.4 15 63-78 31-45 (130)
57 1k8k_C P40, ARP2/3 complex 41 21.6 3E+02 0.01 21.8 11.3 27 104-130 97-125 (372)
58 2dg1_A DRP35, lactonase; beta 21.6 3E+02 0.01 21.7 9.6 17 62-78 90-106 (333)
59 2zjr_T 50S ribosomal protein L 21.3 76 0.0026 21.3 2.8 21 216-236 50-70 (91)
60 2uvk_A YJHT; unknown function, 20.8 1.9E+02 0.0063 23.6 6.1 17 113-130 57-73 (357)
61 4aez_A CDC20, WD repeat-contai 20.4 3.6E+02 0.012 22.1 14.0 99 12-131 105-204 (401)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.7e-35 Score=262.53 Aligned_cols=172 Identities=24% Similarity=0.332 Sum_probs=151.2
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCC
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~G 82 (254)
-.|+..|.++|+++|+||+||.|. |+++..... ..|.++..+...+|++|++ |..|++||+++|+||+||.| .+|
T Consensus 126 ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~-G~~hs~alt~~G~v~~wG~n-~~G 203 (406)
T 4d9s_A 126 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA-GAEHTAAVTEDGDLYGWGWG-RYG 203 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE-CSSEEEEEETTSCEEEEECC-TTS
T ss_pred EEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec-CCCeEEEEeCCCCEEEeeCC-CCC
Confidence 356788899999999999999987 788765443 4566666666779999999 78999999999999999999 899
Q ss_pred ccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (254)
Q Consensus 83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (254)
|||++.......|+++..+...+|++|+||.+|++||+++|+||+||+|.+||||
T Consensus 204 qlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG------------------------- 258 (406)
T 4d9s_A 204 NLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG------------------------- 258 (406)
T ss_dssp TTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC-------------------------
T ss_pred CCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC-------------------------
Confidence 9999988888889999888888999999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
.++......|+++..+.+.+|++|+||.+|++||+++|+|+.
T Consensus 259 -------------------------------~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~ 300 (406)
T 4d9s_A 259 -------------------------------HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYG 300 (406)
T ss_dssp -------------------------------SSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEE
T ss_pred -------------------------------CCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEE
Confidence 333445778999998888899999999999999999997764
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5.9e-35 Score=261.89 Aligned_cols=172 Identities=23% Similarity=0.387 Sum_probs=149.6
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCC
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~G 82 (254)
-.|+..|.++|+++|+||+||.|. ++++..... ..|.++..+...++++|+| |..|++||+++|+||+||.| .+|
T Consensus 178 va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~-G~~ht~~l~~~G~v~~wG~n-~~G 255 (406)
T 4d9s_A 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC-GWRHTISVSYSGALYTYGWS-KYG 255 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE-CSSEEEEEETTCCEEEEECC-TTS
T ss_pred EecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE-CCCcEEEEcCCCCEEEeeCC-CCC
Confidence 356788899999999999999987 777765443 4555565566688999999 88999999999999999999 799
Q ss_pred ccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (254)
Q Consensus 83 qLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (254)
|||+++......|+++..+...+|++|+||.+|++||+++|+||+||+|.+||||
T Consensus 256 qlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG------------------------- 310 (406)
T 4d9s_A 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG------------------------- 310 (406)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC-------------------------
T ss_pred CCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCC-------------------------
Confidence 9999988888889999888888999999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
.++......|++|..+.+.+|++|+||.+|++||+++|+|+.
T Consensus 311 -------------------------------~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~ 352 (406)
T 4d9s_A 311 -------------------------------VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFA 352 (406)
T ss_dssp -------------------------------SSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEE
T ss_pred -------------------------------CCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEE
Confidence 333445778888887778899999999999999999996553
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=259.50 Aligned_cols=171 Identities=20% Similarity=0.275 Sum_probs=149.7
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCc
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~Gq 83 (254)
.|+..|.++|+++|+||+||.|. |+++..... ..|.++..+...+|++|+| |..|++||+++|+||+||.| .+||
T Consensus 113 ~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~-G~~hs~alt~~G~v~~wG~n-~~Gq 190 (389)
T 3kci_A 113 NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA-GGAHSACVTAAGDLYTWGKG-RYGR 190 (389)
T ss_dssp CTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTSCEEEEECC-GGGT
T ss_pred CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe-CcCeEEEEeCCCeEEEeCCC-CCCC
Confidence 46788899999999999999997 788765543 4566666666778999999 78999999999999999999 7999
Q ss_pred cccCCCCCCCCcEEecCCCCCceEEEEeCC--CeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCC
Q 025335 84 SYLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161 (254)
Q Consensus 84 LG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~--~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~ 161 (254)
||+++......|+++..+.+.+|++|+||. +|+++|+++|+||+||.|.+||||.
T Consensus 191 LG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~----------------------- 247 (389)
T 3kci_A 191 LGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR----------------------- 247 (389)
T ss_dssp TCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS-----------------------
T ss_pred cCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC-----------------------
Confidence 999988888889999888889999999995 8999999999999999999999992
Q ss_pred CCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
++......|.+|+.+.+.+|++|+||.+|++||+++|+|+.
T Consensus 248 ---------------------------------g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 248 ---------------------------------GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp ---------------------------------SSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEE
T ss_pred ---------------------------------CCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEE
Confidence 22335678999998888899999999999999999997665
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=259.79 Aligned_cols=172 Identities=21% Similarity=0.280 Sum_probs=149.9
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCC--CeEEEEeCCCcEEEEecCCC
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGC--GFALATSESGKLITWGSADD 80 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~--~hs~aLt~~G~vy~wG~n~~ 80 (254)
-.|+..|.++|+++|+||+||.|. |+++..... ..|.++..+...++++|+| |. .|+++|+++|+||+||.| .
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~-G~g~~~t~~l~~~G~v~~wG~n-~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC-GSGDAQTLCLTDDDTVWSWGDG-D 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CCSSCEEEEEETTTEEEEEECC-G
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE-cCCCcEEEEEccCCEEEEEeCC-C
Confidence 356888999999999999999997 788765543 4566666677788999999 54 699999999999999999 7
Q ss_pred CCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCC
Q 025335 81 EGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSAL 160 (254)
Q Consensus 81 ~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~ 160 (254)
+||||.+.......|+++..+.+.+|++|+||.+|++||+++|+||+||+|.+||||
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG----------------------- 298 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG----------------------- 298 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTC-----------------------
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC-----------------------
Confidence 999999987777889998888788999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
.++......|++|..+.+.+|++|+||.+|++||+++|+|+.
T Consensus 299 ---------------------------------~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~ 340 (389)
T 3kci_A 299 ---------------------------------HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340 (389)
T ss_dssp ---------------------------------SSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEE
T ss_pred ---------------------------------CCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEE
Confidence 333446778999998888999999999999999999996553
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.2e-34 Score=256.13 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=142.7
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCC-------------cccceeeeec-----CCCCceEEEecCCCeEEEE
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSP-------------ILSPIPARLC-----GGDSWKDVCGGGCGFALAT 66 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~-------------~~~p~~v~~~-----~~~~i~~V~~~g~~hs~aL 66 (254)
-.|+..|.++|+++|+||+||.|. |+++.... ...|..+.+. ...+|++|+| |..|++||
T Consensus 169 ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~-G~~hs~al 247 (413)
T 1a12_A 169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC-GAYFTFAI 247 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE-ETTEEEEE
T ss_pred EEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEe-CCCEEEEE
Confidence 356788899999999999999997 78876432 2456555554 3467999999 78999999
Q ss_pred eCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCC--CceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCC
Q 025335 67 SESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFG 144 (254)
Q Consensus 67 t~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~--~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~ 144 (254)
+++|+||+||.| .+||||++.......|+++..+.+ .+|++|+||.+|++||+++|+||+||+|.+||||.
T Consensus 248 t~~G~v~~wG~n-~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~------ 320 (413)
T 1a12_A 248 SHEGHVYGFGLS-NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL------ 320 (413)
T ss_dssp ETTCCEEEEECC-TTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCS------
T ss_pred eCCCCEEEEeCC-CCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCC------
Confidence 999999999999 799999998777777888877655 67999999999999999999999999999999992
Q ss_pred CCCCcccCCCCCcCCCCCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCC-CCcccccceEEeeCCCCcEEEEEecCCe
Q 025335 145 SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASG-DEFFTLSPCLVTLNPGVKITKVAAGGRH 223 (254)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~P~~v~~~~~~~I~~Ia~G~~h 223 (254)
+ +......|++|..+. +|++|+||.+|
T Consensus 321 --------------------------------------------------g~~~~~~~~P~~v~~l~--~v~~v~~G~~h 348 (413)
T 1a12_A 321 --------------------------------------------------GEGAEEKSIPTLISRLP--AVSSVACGASV 348 (413)
T ss_dssp --------------------------------------------------CTTCCCEEEEEECCSSS--SEEEEEECSSE
T ss_pred --------------------------------------------------CCCCccccCCEEecccC--ceeEEEECcce
Confidence 2 122467888888776 89999999999
Q ss_pred EEEEecCCcccc
Q 025335 224 TLILSGKSLESA 235 (254)
Q Consensus 224 s~~Lt~~G~v~~ 235 (254)
++||+++|+|+.
T Consensus 349 s~alt~~G~v~~ 360 (413)
T 1a12_A 349 GYAVTKDGRVFA 360 (413)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEeCCCCEEE
Confidence 999999996553
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-33 Score=252.14 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=139.6
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCC--CCceEEEecCCCeEEEEeCCCcEEEEecCCCC
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSADDE 81 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~--~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~ 81 (254)
.|+..|.++|+++|+||+||.|. ++++..... ..|.++..+.. .+|++|+| |..|++||+++|+||+||.| .+
T Consensus 238 a~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~-G~~hs~al~~~G~v~~wG~n-~~ 315 (413)
T 1a12_A 238 FCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG-GQHHTVCMDSEGKAYSLGRA-EY 315 (413)
T ss_dssp EEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEE-CSSEEEEEETTSCEEEEECC-GG
T ss_pred EeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEec-ccceEEEEeCCCCEEEeeCC-CC
Confidence 46777899999999999999997 888776544 44555544444 56999999 78999999999999999999 79
Q ss_pred CccccC-CCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCC
Q 025335 82 GQSYLT-SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSAL 160 (254)
Q Consensus 82 GqLG~g-~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~ 160 (254)
||||++ .......|++|+.+. +|++|+||.+|++||+++|+||+||.|.+||||
T Consensus 316 GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG----------------------- 370 (413)
T 1a12_A 316 GRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLG----------------------- 370 (413)
T ss_dssp GTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTC-----------------------
T ss_pred CccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCC-----------------------
Confidence 999998 455556677776654 899999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEee--CCCCcEEEEEecCCeEEEEecCCcc
Q 025335 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTL--NPGVKITKVAAGGRHTLILSGKSLE 233 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~--~~~~~I~~Ia~G~~hs~~Lt~~G~v 233 (254)
.++......|++|.. +.+.+|++|+||.+||++|+++|++
T Consensus 371 ---------------------------------~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 371 ---------------------------------TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp ---------------------------------SSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred ---------------------------------CCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 333445778888874 4667899999999999999999875
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.8e-32 Score=243.92 Aligned_cols=213 Identities=20% Similarity=0.195 Sum_probs=144.9
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCCc--ccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEec--CCCC
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPI--LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGS--ADDE 81 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~--~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~--n~~~ 81 (254)
.|+..|.++|+++|+||+||.|. |+++..... ..+.|.++....+|++|+| |..|++||+++|+||+||. | .+
T Consensus 81 a~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~-G~~hs~al~~~G~v~~wG~~~n-~~ 158 (423)
T 3mvd_K 81 SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA-GDSHSACLLEDGRVFAWGSFRD-SH 158 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEECEEC-SS
T ss_pred eeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc-CcCeEEEEeCCCeEEEEeCCCC-CC
Confidence 46788899999999999999997 888766432 1333444444568999999 7899999999999999999 8 79
Q ss_pred CccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCC
Q 025335 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161 (254)
Q Consensus 82 GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~ 161 (254)
||||++.... .|.|+.++...+|++|+||.+|++||+++|+||+||.|.+||||.......... + ....
T Consensus 159 GqlG~~~~~~--~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~-------~--~~~~ 227 (423)
T 3mvd_K 159 GNMGLTIDGN--KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGE-------G--RRGK 227 (423)
T ss_dssp SEEESBTTBC--EEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSC-------S--TTTT
T ss_pred CCcCcCCCCC--CceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccc-------c--cccc
Confidence 9999986544 467777777889999999999999999999999999999999995421110000 0 0000
Q ss_pred CCCCCCC-------------cccCCcee----eeeeeeeeccCCCCCCCCCC--CcccccceEEeeCCCCcEEEEEecCC
Q 025335 162 TEQAPPS-------------DKRAGEEV----VKRRKTSSAREESENPASGD--EFFTLSPCLVTLNPGVKITKVAAGGR 222 (254)
Q Consensus 162 ~~~~~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~~~~g~--~~~~~~P~~v~~~~~~~I~~Ia~G~~ 222 (254)
.....|. ........ .....+.+..+.......+. ......|.++. ..+|++|+||.+
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ 304 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQH 304 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSS
T ss_pred ccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccC
Confidence 1111110 00000000 11223333332222222222 23445666665 348999999999
Q ss_pred eEEEEecCCcccc
Q 025335 223 HTLILSGKSLESA 235 (254)
Q Consensus 223 hs~~Lt~~G~v~~ 235 (254)
|++||+++|+|+.
T Consensus 305 ht~alt~~G~v~~ 317 (423)
T 3mvd_K 305 HTVILTTDLKCSV 317 (423)
T ss_dssp EEEEEETTCCEEE
T ss_pred eEEEEeCCCcEEE
Confidence 9999999997664
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=251.35 Aligned_cols=221 Identities=18% Similarity=0.217 Sum_probs=152.4
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCCc-------------------------ccceeeee--c----CCCCceE
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPI-------------------------LSPIPARL--C----GGDSWKD 54 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~-------------------------~~p~~v~~--~----~~~~i~~ 54 (254)
.|+..|.++|+++|+||+||.|. |+++..... ..|.++.. + ...+|++
T Consensus 73 a~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~ 152 (473)
T 3of7_A 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQ 152 (473)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEE
T ss_pred EeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEE
Confidence 46788899999999999999997 788765432 34555542 2 3578999
Q ss_pred EEecCCCeEEEEeCCCcEEEEec--CCCCCccccCCCC--CCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcC
Q 025335 55 VCGGGCGFALATSESGKLITWGS--ADDEGQSYLTSGK--HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 55 V~~~g~~hs~aLt~~G~vy~wG~--n~~~GqLG~g~~~--~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~ 130 (254)
|+| |..|++||+++|+||+||. + ..||||++... ....|.++..+.+.+|++|+||.+|++||+++|+||+||.
T Consensus 153 va~-G~~hs~alt~~G~vy~wG~n~~-~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~ 230 (473)
T 3of7_A 153 LAA-TDNMSCALFSNGEVYAWGTFRC-NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGN 230 (473)
T ss_dssp EEE-CSSEEEEEETTSCEEEEECEEE-TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEc-cCCEEEEEeCCCeEEEeeCCcC-CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeC
Confidence 999 7899999999999999998 5 58999986443 4445777777777789999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCCCCCCcccCCcee---eeeeeeeeccCCCCCCCCCCC----cccccc
Q 025335 131 RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEV---VKRRKTSSAREESENPASGDE----FFTLSP 203 (254)
Q Consensus 131 n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~----~~~~~P 203 (254)
|.+||||.......... ...++...+ ..+..+.++..+.. ...+.+++..+...+...++. .....|
T Consensus 231 n~~GqLG~~~~~~~~~~----~~~p~~~~~--~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 231 GQQNQLGRKVMERFRLK----TLDPRPFGL--RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp CTTSTTSSCCCGGGTTT----TCSCEECSC--CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred CCCCCCCCCcccccccc----ccCceecCC--cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 99999995321100000 000000000 01111122222111 122344444433333333332 245789
Q ss_pred eEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 204 CLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 204 ~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
++|..+.+.+|++|+||.+|++||+++|+|+.
T Consensus 305 ~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~ 336 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGEHHSLILSQDGDLYS 336 (473)
T ss_dssp EECCCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred ccccccCCccEEEEEeCCCeEEEEeCCCeEEE
Confidence 99998888999999999999999999997654
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=7.6e-33 Score=249.14 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=136.2
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCC-cccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCc
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~-~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~Gq 83 (254)
-.++..|.++++++|+||+||.|. |+++.... ...+.|..+.....+++|++ |..|++||+++|+||+||.| .+||
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~-G~~h~~~l~~~G~v~~wG~n-~~Gq 106 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA-GGMHNLVLTKSGDIYSFGCN-DEGA 106 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE-CSSEEEEEETTSCEEEEECC-SSST
T ss_pred EecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee-CCCeEEEEeCCCeEEEeECC-CCcC
Confidence 356778899999999999999997 88887654 23344545555557899999 78999999999999999999 7999
Q ss_pred cccCCCCC--CCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcC--CCCCCCCCCcCCCCCCCCcccCCCCCcCC
Q 025335 84 SYLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSA 159 (254)
Q Consensus 84 LG~g~~~~--~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~--n~~GQLG~~~~~~~~~~~~~~~~~g~~~~ 159 (254)
||++.... ...|.++.. ..+|++|+||.+|++||+++|+||+||. |.+||||.
T Consensus 107 LG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~--------------------- 163 (423)
T 3mvd_K 107 LGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL--------------------- 163 (423)
T ss_dssp TCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEES---------------------
T ss_pred CCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCc---------------------
Confidence 99986554 456777765 4579999999999999999999999999 99999982
Q ss_pred CCCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 160 LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
+.......| +..+.+.+|++|+||.+|++||+++|+|+.
T Consensus 164 -----------------------------------~~~~~~~~p--~~~~~~~~i~~va~G~~hs~alt~~G~v~~ 202 (423)
T 3mvd_K 164 -----------------------------------TIDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFT 202 (423)
T ss_dssp -----------------------------------BTTBCEEEE--EESSTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred -----------------------------------CCCCCCcee--eEecCCCcEEEEecCCCeEEEEecCCeEEE
Confidence 112233444 444667899999999999999999997764
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=247.92 Aligned_cols=166 Identities=23% Similarity=0.302 Sum_probs=136.2
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCC------cccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCC
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP------ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~------~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~ 79 (254)
.|+..|.++|+++|+||+||.|. |+++.... ...|.++..+...+|++|+| |..|++||+++|+||+||.|
T Consensus 263 a~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~-G~~hs~~lt~~G~v~~wG~n- 340 (473)
T 3of7_A 263 ASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA-GEHHSLILSQDGDLYSCGRL- 340 (473)
T ss_dssp EECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEE-CSSEEEEEETTSCEEEEEEC-
T ss_pred ecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEe-CCCeEEEEeCCCeEEEEECC-
Confidence 56788899999999999999997 78776543 24566666666788999999 78999999999999999999
Q ss_pred CCCccccCCC------------CCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCC
Q 025335 80 DEGQSYLTSG------------KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG 147 (254)
Q Consensus 80 ~~GqLG~g~~------------~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~ 147 (254)
.+||||++.. .....|.|..+....+|++|+||.+|++||+++|+||+||+|.+||||
T Consensus 341 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG---------- 410 (473)
T 3of7_A 341 DMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVG---------- 410 (473)
T ss_dssp TTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTC----------
T ss_pred CCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCC----------
Confidence 7999998742 122234555554344899999999999999999999999999999999
Q ss_pred CcccCCCCCcCCCCCCCCCCCcccCCceeeeeeeeeeccCCCCCCCCCC-CcccccceEEee--CCCCcEEEEEecCCeE
Q 025335 148 SFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGD-EFFTLSPCLVTL--NPGVKITKVAAGGRHT 224 (254)
Q Consensus 148 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~P~~v~~--~~~~~I~~Ia~G~~hs 224 (254)
+|+ ......|++|+. +.+.+|++|+||..||
T Consensus 411 ----------------------------------------------~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s 444 (473)
T 3of7_A 411 ----------------------------------------------LGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFS 444 (473)
T ss_dssp ----------------------------------------------CCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEE
T ss_pred ----------------------------------------------CCCCCccccCCeEecccccCCCeEEEEeeCCCeE
Confidence 333 346788999984 4567899999999999
Q ss_pred EEEecC
Q 025335 225 LILSGK 230 (254)
Q Consensus 225 ~~Lt~~ 230 (254)
+++...
T Consensus 445 ~~~~~~ 450 (473)
T 3of7_A 445 VSGGVK 450 (473)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999773
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.95 E-value=6.6e-28 Score=206.10 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=117.6
Q ss_pred CcCCcceEEEecCCcEEEccCCC-CCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccc
Q 025335 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG 85 (254)
.++..|.++|+ +|+||+||.|. ++++.. . ....+|++|++ |..|+++|+ +|+||+||.| .+||||
T Consensus 30 a~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p------~----~~~~~i~~ia~-G~~hs~~l~-~G~v~~wG~n-~~Gqlg 95 (282)
T 3qhy_B 30 AGGYFHGLALK-GGKVLGWGANLNGQLTMP------A----ATQSGVDAIAA-GNYHSLALK-DGEVIAWGGN-EDGQTT 95 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCSSSTTSCC------G----GGGSCCCEEEE-CSSEEEEEE-TTEEEEEECC-TTSTTC
T ss_pred EeCCCeEEEEE-CCEEEEEeCCCCCCCCCC------c----cCCCCEEEEEe-CCCEEEEEE-CCEEEEeeCC-CCCCCC
Confidence 46778899998 99999999987 777631 1 12347889999 789999996 9999999999 799998
Q ss_pred cCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCCC
Q 025335 86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQA 165 (254)
Q Consensus 86 ~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (254)
+ |.++ ..+|++|+||.+|++||+ +|+||+||.|.+||||..... ...+
T Consensus 96 ~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~-------------------~~~i 143 (282)
T 3qhy_B 96 V--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA-------------------QSGV 143 (282)
T ss_dssp C--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGG-------------------GSSE
T ss_pred C--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccC-------------------CCCe
Confidence 5 3333 247999999999999999 999999999999999832100 0000
Q ss_pred CCCcccCCce--eeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCcccc
Q 025335 166 PPSDKRAGEE--VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESA 235 (254)
Q Consensus 166 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~ 235 (254)
..+.....+. ....+.+.+..+... .. -++.....+|++|+||.+|+++| ++|+++.
T Consensus 144 ~~i~~G~~~~~~l~~G~v~~wG~n~~g----------ql--g~p~~~~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 144 TALDGGVYTALAVKNGGVIAWGDNYFG----------QT--TVPAEAQSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp EEEEECSSEEEEEETTEEEEEECCTTS----------TT--SCCGGGGSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred EEEEcccCEEEEEECCEEEEecCCCCC----------CC--CCceecCCCeEEEEecCCEEEEE-ECCeEEE
Confidence 0111111111 111222222211111 11 14555567999999999999999 8986655
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.95 E-value=4.7e-27 Score=200.82 Aligned_cols=172 Identities=16% Similarity=0.220 Sum_probs=117.9
Q ss_pred CCcCCcceEEEecCCcEEEccCCC-CCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCcc
Q 025335 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (254)
Q Consensus 6 ~~~~~~~~~~vt~~G~vy~wG~n~-g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqL 84 (254)
-.|+..|.++|+ +|+||+||.|. ++++. |.++ ..+|++|+| |..|++||+ +|+||+||.| .+|||
T Consensus 68 ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------P~~~----~~~v~~ia~-G~~hs~al~-~G~v~~wG~n-~~gql 133 (282)
T 3qhy_B 68 IAAGNYHSLALK-DGEVIAWGGNEDGQTTV------PAEA----RSGVDAIAA-GAWASYALK-DGKVIAWGDD-SDGQT 133 (282)
T ss_dssp EEECSSEEEEEE-TTEEEEEECCTTSTTCC------CGGG----SSSEEEEEE-ETTEEEEEE-TTEEEEEECC-TTSTT
T ss_pred EEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------Cccc----CCCeEEEEC-cCCEEEEEe-CCeEEEecCC-CCCcC
Confidence 356788899996 99999999986 77763 2222 247899999 789999999 9999999999 79999
Q ss_pred ccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCCCC
Q 025335 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQ 164 (254)
Q Consensus 85 G~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (254)
|.. . . ...+|++|+||.+|+++|+ +|+||+||.|.+||||..... ...
T Consensus 134 g~~--------~--~--~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~-------------------~~~ 181 (282)
T 3qhy_B 134 TVP--------A--E--AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEA-------------------QSG 181 (282)
T ss_dssp SCC--------G--G--GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG-------------------GSS
T ss_pred CCC--------c--c--CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceec-------------------CCC
Confidence 742 1 1 2356999999999999999 899999999999999832110 000
Q ss_pred CCCCcccCCcee--eeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEecCCeEEEEecCCccccc
Q 025335 165 APPSDKRAGEEV--VKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGKSLESAE 236 (254)
Q Consensus 165 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~~G~v~~~ 236 (254)
+..+.....+.. ...+.+.+..+.... .+ ++.....+|++|+||.+|+++|+ +|+++..
T Consensus 182 v~~i~~G~~hs~al~~G~v~~wG~n~~gq----------lg--~p~~~~~~v~~i~~G~~h~~al~-~g~v~~w 242 (282)
T 3qhy_B 182 VDDVAGGIFHSLALKDGKVIAWGDNRYKQ----------TT--VPTEALSGVSAIASGEWYSLALK-NGKVIAW 242 (282)
T ss_dssp EEEEEECSSEEEEEETTEEEEEECCTTST----------TC--CCGGGGSSCCEEEECSSCEEEEE-TTEEEEE
T ss_pred eEEEEecCCEEEEEECCeEEEEECCCCCC----------CC--CCcccCCCceEEEcCCCEEEEEE-CCEEEEe
Confidence 111111111111 112223322211111 11 34334578999999999999999 9976554
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.86 E-value=0.0017 Score=53.36 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=55.4
Q ss_pred CceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcC
Q 025335 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 51 ~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~ 130 (254)
.+..|+. ..+|.+.+--++++|++|++ +.||+-+... ..+..++++|.++++-++.-+.+-.||+
T Consensus 310 ~i~~VsG-~y~H~vvi~gd~el~sFG~~-sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSG-LYTHYTVMYGDGQIAFFGNN-DNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBC-SSSEEEC-CTTTCCCEEECC-TTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccc-cccceEEEecCceeEEeccC-CCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence 3445665 56699999999999999999 7999965422 2468999999999999999999999998
Q ss_pred CCC
Q 025335 131 REC 133 (254)
Q Consensus 131 n~~ 133 (254)
.-.
T Consensus 375 SPD 377 (400)
T 4gbf_A 375 SPD 377 (400)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=91.12 E-value=0.29 Score=40.27 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=29.9
Q ss_pred CceEEEEeCCCeEEEEEcCCcEEEEcCCCCCCCC
Q 025335 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137 (254)
Q Consensus 104 ~~i~~Ia~G~~hs~aLt~~G~vy~wG~n~~GQLG 137 (254)
..|-+|+--+.|.+++--++++|.+|+++.||+-
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ 342 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCD 342 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCcee
Confidence 4688899999999999999999999999998775
No 15
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=73.21 E-value=24 Score=25.57 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=51.2
Q ss_pred cCCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccC
Q 025335 8 REENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (254)
Q Consensus 8 ~~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g 87 (254)
|..+.-|.+..||.|-.-. ....+...-....+. ..++.|.....++-+++..+|+||+--.. .
T Consensus 13 ~~~g~~L~I~~dG~V~Gt~------~~~~~~s~l~~~~v~--~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~-s------- 76 (132)
T 3q7x_A 13 TETGQFLRINPDGTVDGTR------DRSDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDGTRDR-S------- 76 (132)
T ss_dssp TTTCCEEEECTTSBEEEEC------CTTCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEEECC--C-------
T ss_pred ccCcEEEEECCCCcEEeec------CCCCCCcEEEEEecc--cCEEEEEEEcccEEEEECCCCCEeeccCC-C-------
Confidence 3444567788888885322 221222111111121 23556665555688999999999964322 0
Q ss_pred CCCCCCCcEEecCCCC-CceEEEEeCCCeEEEEEcCCcEEEE
Q 025335 88 SGKHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYTW 128 (254)
Q Consensus 88 ~~~~~~~p~~v~~~~~-~~i~~Ia~G~~hs~aLt~~G~vy~w 128 (254)
.....-..+....+ ..+..+..|. -+|++.+|++|.-
T Consensus 77 --~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 77 --DPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp --CGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred --CCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 11111111111111 1233333444 7899999999963
No 16
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=70.10 E-value=30 Score=25.42 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=50.8
Q ss_pred CcCCcceEEEecCCcEEEccCCCCCCCCCCC--cccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCcc
Q 025335 7 KREENEKMEECKETVVYMWGYLPGTSPEKSP--ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (254)
Q Consensus 7 ~~~~~~~~~vt~~G~vy~wG~n~g~~~~~~~--~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqL 84 (254)
.|..+..|.+..||.|=. ......+ .+...++. ..++.|-+...++-++++.+|+||+--..
T Consensus 15 ~~~~g~~LqI~~dG~V~G------t~~~~~~~s~l~~~sv~----~G~V~I~gv~sg~yL~m~~~G~v~Gs~~~------ 78 (143)
T 3snv_A 15 YKKGGQYLRINPDGTVDG------TRDRSDTHIQFQISPEG----NGEVLLKSTETGQYLRINPDGTVDGTRDR------ 78 (143)
T ss_dssp ----CCEEEECTTSBEEE------ESCTTCTTSEEEEEEEE----TTEEEEEETTTTEEEEECTTSBEEEECCT------
T ss_pred EEcCCEEEEECCCCCEee------ecCCCCCceEEEEEecc----CCeEEEEEEcccEEEeECCCCCEeecccC------
Confidence 345666788899998842 2122112 12222221 23555665556688999999999864322
Q ss_pred ccCCCCCCCCcEEecCCCC-CceEEEEeCCCeEEEEEcCCcEEE
Q 025335 85 YLTSGKHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYT 127 (254)
Q Consensus 85 G~g~~~~~~~p~~v~~~~~-~~i~~Ia~G~~hs~aLt~~G~vy~ 127 (254)
......-..+..... ..+..+..| .-+|++.+|++|.
T Consensus 79 ----~~ec~flE~~~e~~g~v~i~~~~sg--~Ylamnk~Grl~G 116 (143)
T 3snv_A 79 ----SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 116 (143)
T ss_dssp ----TCTTSEEEEEECSTTEEEEEETTTC--CEEEECTTSBEEE
T ss_pred ----CCcceEEEEEecCCcEEEEEEeeCC--EEEEEcCCCcCcC
Confidence 011111122222112 123333334 5789999999964
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=65.38 E-value=32 Score=31.56 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=33.1
Q ss_pred eEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcC
Q 025335 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~ 130 (254)
|++++..+|+||.+|.. ....+-.=+. ....-+.+..... .=.+|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~-~~~~v~~yd~-~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGN-DAKKTSLYDS-SSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSS-STTCEEEEEG-GGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCC-CCCceEEecC-cCCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 45778899999999975 2221100000 0011111111100 23568888887999999985
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=63.78 E-value=45 Score=31.09 Aligned_cols=64 Identities=8% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCcceEEEec-CCcEEEccCCCCCC--CCCCCcccceeeeecCCCCceEEEe---cCCCeEEEEeCCCcEEEEecC
Q 025335 9 EENEKMEECK-ETVVYMWGYLPGTS--PEKSPILSPIPARLCGGDSWKDVCG---GGCGFALATSESGKLITWGSA 78 (254)
Q Consensus 9 ~~~~~~~vt~-~G~vy~wG~n~g~~--~~~~~~~~p~~v~~~~~~~i~~V~~---~g~~hs~aLt~~G~vy~wG~n 78 (254)
...|.+++.. +|+||+.|-..+.. ......+.+ .....+.+.. .=.+|++++-.+|+||.+|..
T Consensus 440 R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~------~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM------KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET------TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred ccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC------CCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 4456666665 99999999432111 111111111 0111111111 013488888669999999965
No 19
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.31 E-value=69 Score=26.84 Aligned_cols=113 Identities=9% Similarity=0.000 Sum_probs=66.2
Q ss_pred CcceEEEecCCcEEEccCCC---C-CCCCCCCcccceeeeecCCCCceEEEecC----CCeEEEEeCCCcEEEEecCCCC
Q 025335 10 ENEKMEECKETVVYMWGYLP---G-TSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDE 81 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~---g-~~~~~~~~~~p~~v~~~~~~~i~~V~~~g----~~hs~aLt~~G~vy~wG~n~~~ 81 (254)
.+..|++|+.|++|..-..+ . ....+.+ ....+++..+.+|..+..+. ....+++|.+|.+.-.-..+ +
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~--i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~-~ 129 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQH--VANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD-F 129 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE--HHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG-G
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE--HHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH-h
Confidence 34478899999999887432 1 1111211 11123344566777766643 23688899999998876552 2
Q ss_pred CccccCCCCCCCCcEEecCCCCCceEEE--EeCCCeEEEEEcCCcEEEEcCC
Q 025335 82 GQSYLTSGKHGETPEPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 82 GqLG~g~~~~~~~p~~v~~~~~~~i~~I--a~G~~hs~aLt~~G~vy~wG~n 131 (254)
-.. ...-...+.+..+..++.+ +.+.++.+++|++|++|.+-..
T Consensus 130 ~~~------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 130 DSN------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp CCC------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred hcc------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 110 0001122333334445443 4467889999999999999766
No 20
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=58.42 E-value=52 Score=24.12 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=36.5
Q ss_pred CceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCC-CceEEEEeCCCeEEEEEcCCcEEE
Q 025335 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYT 127 (254)
Q Consensus 51 ~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~-~~i~~Ia~G~~hs~aLt~~G~vy~ 127 (254)
.++.+-+.-.++-++++.+|+||+--.- ......-..+..... ..|..+..|. -+|++.+|++|+
T Consensus 73 G~V~L~g~~sg~yL~mn~~G~l~Gs~~~----------t~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 73 GEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp TEEEEEETTTTEEEEECTTSBEEEECCT----------TCGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CEEEEEEecCCEEEeECCCCCEeecccC----------CCCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 4566676444688999999999964222 011111112222111 1233333444 789999999996
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=58.19 E-value=62 Score=25.75 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=32.7
Q ss_pred ceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCC--eEEEEEcCCcEEEE
Q 025335 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTW 128 (254)
Q Consensus 52 i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~--hs~aLt~~G~vy~w 128 (254)
+..++....++.++...+|.|+.|-.. .+++-.. ........... .....|..++-..+ +-+.-..||.|+.|
T Consensus 259 v~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~-~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 259 INALCFSPNRYWLCAATGPSIKIWDLE--GKIIVDE-LKQEVISTSSK-AEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETT--TTEEEEE-ECCC--------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeeecCCCCceeeccCCCEEEEEECC--CCeEEEe-ccccceeeecc-CCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 334443222355666677778777544 1221100 00000000011 11345666665443 34444678888888
No 22
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.84 E-value=80 Score=26.13 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=67.8
Q ss_pred CcceEEEecCCcEEEccCCC----CCCCCCCCcccceeeeecCCCCceEEEecC----CCeEEEEeCCCcEEEEecCCCC
Q 025335 10 ENEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDE 81 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~----g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g----~~hs~aLt~~G~vy~wG~n~~~ 81 (254)
++..+++|+.|++|..-..+ +....+.+. ...+++..+..+..+..+. ..+-+++|++|.++..-..+ +
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i--~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~-~ 134 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNI--SELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD-F 134 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBG--GGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG-G
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcCh--hhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH-h
Confidence 34578999999999986442 122222221 1223344556666655432 23688899999999987762 2
Q ss_pred Ccc-ccCCCCCCCCcEEecCCCCCceEEEEe--CCCeEEEEEcCCcEEEEcCCCCCCCC
Q 025335 82 GQS-YLTSGKHGETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGWRECVPSA 137 (254)
Q Consensus 82 GqL-G~g~~~~~~~p~~v~~~~~~~i~~Ia~--G~~hs~aLt~~G~vy~wG~n~~GQLG 137 (254)
-.. +.| -..+.+..+..++.+.. +..+-+++|++|.+.-+-.++.-..|
T Consensus 135 ~~~r~~G-------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~g 186 (312)
T 1suu_A 135 KAVKSRG-------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTN 186 (312)
T ss_dssp CC----C-------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred hccCCCc-------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccC
Confidence 100 111 11123444555655543 56788899999999988766653333
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=57.80 E-value=90 Score=28.97 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.9
Q ss_pred CCeEEEEEcCCcEEEEcC
Q 025335 113 WAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG~ 130 (254)
..|++++..+|++|++|=
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 578888887799999983
No 24
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=46.86 E-value=1.1e+02 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.2
Q ss_pred CeEEEEeCCCcEEEEecC
Q 025335 61 GFALATSESGKLITWGSA 78 (254)
Q Consensus 61 ~hs~aLt~~G~vy~wG~n 78 (254)
+|++++ .+|+||.+|..
T Consensus 151 ~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp SCEEEE-ETTEEEEECCE
T ss_pred ccEEEE-ECCEEEEEcCC
Confidence 377766 68899999964
No 25
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1
Probab=43.90 E-value=64 Score=23.67 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=33.2
Q ss_pred CCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEE
Q 025335 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
..+..|.+..||.|-.-. .+..+...-....+ ...++.|..+-.+.-+|++++|+||+-
T Consensus 18 r~g~~LqI~~dG~V~Gt~------~~~~~~sile~~sv--~~g~V~I~gv~s~~YLcMn~~G~Lygs 76 (144)
T 1q1u_A 18 QQGYFLQMHPDGTIDGTK------DENSDYTLFNLIPV--GLRVVAIQGVKASLYVAMNGEGYLYSS 76 (144)
T ss_dssp TTTEEEEECTTSCEEEES------CTTSGGGCEEEEEE--ETTEEEEEETTTCCEEEECTTSCEEEE
T ss_pred cCCeEEEECCCCcEeeec------CCCCCceeEEEEec--cCCEEEEEEcccCcEEEEcCCCCEEec
Confidence 345577888888875222 22111111111111 224556666555688999999999964
No 26
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=43.38 E-value=1.1e+02 Score=23.62 Aligned_cols=59 Identities=7% Similarity=-0.089 Sum_probs=29.8
Q ss_pred ceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecC
Q 025335 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (254)
Q Consensus 12 ~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n 78 (254)
..++++.+|+||.-....+.+..-........+.... ....-+.++++.+|++|.-...
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~ 81 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPT--------PDAKVMCLIVSSLGDIWFTENG 81 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSS--------TTCCEEEEEECTTSCEEEEETT
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCC--------CCCcceeEEECCCCCEEEEecC
Confidence 3688899999999765332111000000000111110 0011277888889999876543
No 27
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Probab=43.38 E-value=85 Score=23.00 Aligned_cols=58 Identities=17% Similarity=-0.012 Sum_probs=32.6
Q ss_pred CcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEE
Q 025335 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
.+..|.|..||.|-.-. ....+...-....+ ...++.|..+-.+.-+|++++|+||+-
T Consensus 23 ~g~~LqI~~dG~V~Gt~------~~~~~~s~l~~~sv--~~g~V~I~gv~s~~YLcmn~~G~Lygs 80 (145)
T 1nun_A 23 TKYFLKIEKNGKVSGTK------KENCPYSILEITSV--EIGVVAVKAINSNYYLAMNKKGKLYGS 80 (145)
T ss_dssp TSCEEEECTTSCEEEEC------CSCCTTSCEEEEEE--ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred CCeEEEECCCCcEeeec------CCCCCceeEEEEEe--cCCeEEEEEcccCcEEEEcCCCCEeec
Confidence 34568888888885322 11111111111111 123556666555688999999999974
No 28
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=42.46 E-value=2.2e+02 Score=26.75 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=69.4
Q ss_pred CCcceEEEecCCcEEEccCCC--CCCCCCCCcccceeeeecCCCCceEEEecCCC-eEEEEeCCCcEEEEecCCCCCccc
Q 025335 9 EENEKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSY 85 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~--g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~n~~~GqLG 85 (254)
-.+..+++|+.|++|.--..+ .....+.+ ....+.+..+.+|..+...... +-++.|.+|.+.-.-..+ +-
T Consensus 513 t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~--i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~-~~--- 586 (716)
T 1zvu_A 513 SNQPVVFVDSTGRSYAIDPITLPSARGQGEP--LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND-LV--- 586 (716)
T ss_dssp SSSCEEEEETTSEEEEECTTTSCCCC---CB--STTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG-GC---
T ss_pred CCCEEEEEecCCcEEEEEeeecccccccCee--HHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHH-hc---
Confidence 344589999999999987543 11122222 1222334456677776664333 677789999988775542 11
Q ss_pred cCCCCCCCCc-EEecCCCCCceEEE---EeCCCeEEEEEcCCcEEEEcCCCCCCCC
Q 025335 86 LTSGKHGETP-EPFPLPTEASVVKA---AAGWAHCVSVTEAGEVYTWGWRECVPSA 137 (254)
Q Consensus 86 ~g~~~~~~~p-~~v~~~~~~~i~~I---a~G~~hs~aLt~~G~vy~wG~n~~GQLG 137 (254)
...... ..+.+..+..++.+ ..+..+.+++|++|++.-+-.++--.+|
T Consensus 587 ----~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 587 ----ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp ----CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred ----ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 011111 22334334444432 2377899999999999999877754444
No 29
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=41.73 E-value=1.1e+02 Score=23.51 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=29.6
Q ss_pred eEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCC
Q 025335 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n 131 (254)
..++++.+|.+|.-... .+.+-.-+.. .......... . ...-+.++++.+|++|+-...
T Consensus 195 ~~i~~d~~g~l~v~~~~--~~~v~~~~~~-~~~~~~~~~~-~-------~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEHN--TNQVVKLLAG-STTSTVLPFT-G-------LNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEEEECTTCCEEEEETT--TSCEEEECTT-CSCCEECCCC-S-------CSCEEEEEECTTCCEEEEEGG
T ss_pred eEEEECCCCCEEEEECC--CCcEEEEcCC-CCcceeeccC-C-------CCCceeEEECCCCCEEEEECC
Confidence 67888888888876654 1222111110 0001111000 0 123467788888998877543
No 30
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=41.29 E-value=1.4e+02 Score=24.13 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred CcceEEEecCCcEEEccCCC--CCCCCCCCcccceeeeecCCCCceEEEecC---CCeEEEEeCCCcEEEEecCCCCCcc
Q 025335 10 ENEKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGG---CGFALATSESGKLITWGSADDEGQS 84 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~--g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g---~~hs~aLt~~G~vy~wG~n~~~GqL 84 (254)
.+..+++|++|++|.--..+ ...... + +..+.+|..+.+ . ....+++|.+|.+.-.-..+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~--------l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~----- 99 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS--------L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE----- 99 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC--------C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG-----
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc--------c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH-----
Q ss_pred ccCCCCCCCCcEEecCCCCCceEEEEeCCCe--EEEEEcCCcEEEEcCCCCCCCCCCcCCCCCCCCcccCCCCCcCCCCC
Q 025335 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAH--CVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (254)
Q Consensus 85 G~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~h--s~aLt~~G~vy~wG~n~~GQLG~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (254)
-. ....-...+.+..+..++.+.....| .+++|++|++|.+-..+.-.+|+
T Consensus 100 --~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR------------------------ 152 (276)
T 3no0_A 100 --FE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTP------------------------ 152 (276)
T ss_dssp --TT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCT------------------------
T ss_pred --hh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCC------------------------
Q ss_pred CCCCCCcccCCceeeeeeeeeeccCCCCCCCCCCCcccccceEEeeCCCCcEEEEEec--CCeEEEEecCCcccccC
Q 025335 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG--GRHTLILSGKSLESAEP 237 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~hs~~Lt~~G~v~~~~ 237 (254)
...=-..+...++.+|+.+.+. ..+.+++|++|.....+
T Consensus 153 ------------------------------------~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~ 193 (276)
T 3no0_A 153 ------------------------------------GARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKIS 193 (276)
T ss_dssp ------------------------------------TCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEE
T ss_pred ------------------------------------CCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeE
No 31
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ...
Probab=38.97 E-value=94 Score=22.82 Aligned_cols=57 Identities=11% Similarity=-0.105 Sum_probs=31.7
Q ss_pred cceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEE
Q 025335 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
+..|.|..||.|-.-. ....+...-....+ ...++.|..+-.+.-+|++++|+||+-
T Consensus 26 g~~LqI~~dG~V~Gt~------~~~~~~s~l~i~sv--~~G~V~I~gv~s~~YLcMn~~G~Lygs 82 (146)
T 1rg8_A 26 GHFLRILPDGTVDGTR------DRSDQHIQLQLSAE--SVGEVYIKSTETGQYLAMDTDGLLYGS 82 (146)
T ss_dssp TEEEEECTTSCEEEEC------CTTCTTCCEEEEEE--ETTEEEEEETTTCCEEEECTTSCEEEE
T ss_pred CEEEEECCCCcEeeec------cCCCCceEEEEEee--cCCeEEEEEcccCcEEEECCCCCEeec
Confidence 4567788888875322 11111111111111 123556666555688999999999973
No 32
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A
Probab=38.44 E-value=1.1e+02 Score=22.41 Aligned_cols=25 Identities=12% Similarity=-0.090 Sum_probs=19.5
Q ss_pred CceEEEecCCCeEEEEeCCCcEEEE
Q 025335 51 SWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 51 ~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
.++.|.+...++-+++..+|+||+-
T Consensus 83 GvV~I~Gv~tg~yL~Mn~dG~l~Gs 107 (142)
T 3p6i_A 83 GEVLLKSTETGQYLRINPDGTVDGT 107 (142)
T ss_dssp TEEEEEETTTCCEEEECTTSBEEEE
T ss_pred CEEEEEEecCceEEeECCCCCCccc
Confidence 4666776666688999999999864
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=38.31 E-value=1.4e+02 Score=23.34 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=55.7
Q ss_pred ceEEEecCCcEEEccCCCCCCCCCCCcccceeeee-cCCCCceEEEecCCCeEEEEeCCCcEEEEecCCCCCccccCCCC
Q 025335 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL-CGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGK 90 (254)
Q Consensus 12 ~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~-~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~ 90 (254)
..++++.||++++.+...+............++.. .....+..++....+..++...+|.|..|-.. .....
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~-~~~~~------ 85 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNK------ 85 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCC------
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC-CCCce------
Confidence 46899999999999876543322111111222222 23445556665333345555558888888665 21110
Q ss_pred CCCCcEEec-CCCCCceEEEEeCCC--eEEEEEcCCcEEEEcCC
Q 025335 91 HGETPEPFP-LPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 91 ~~~~p~~v~-~~~~~~i~~Ia~G~~--hs~aLt~~G~vy~wG~n 131 (254)
.....+. ......|..++...+ ..++-..+|.|+.|=..
T Consensus 86 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 86 --SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp --SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred --eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 0111111 112344555554432 33444567778877443
No 34
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=35.81 E-value=1.7e+02 Score=23.41 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=67.4
Q ss_pred CcceEEEecCCcEEEccCCC--CCCCCCCCcccceeeeecCCCCceEEEecCCC-eEEEEeCCCcEEEEecCCCCCcccc
Q 025335 10 ENEKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYL 86 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~--g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~n~~~GqLG~ 86 (254)
.+..+++|++|++|..-..+ .....+.+ ....+++..+..|..+...... +-+++|++|.+.-.-..+ +-..
T Consensus 44 ~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e-~~~~-- 118 (256)
T 1zvt_A 44 NQPVVFVDSTGRSYAIDPITLPSARGQGEP--LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND-LVAR-- 118 (256)
T ss_dssp TSCEEEEETTSEEEEECGGGSCCSSSCCEE--GGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG-GCCC--
T ss_pred CCEEEEEeCCCeEEEEEHHHCCCcCCCCeE--eeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH-hccc--
Confidence 44579999999999987543 11111111 1113344456677766553223 577889999888776552 2000
Q ss_pred CCCCCCCCc-EEecCCCCCceEEE-E--eCCCeEEEEEcCCcEEEEcCCCCCCCCC
Q 025335 87 TSGKHGETP-EPFPLPTEASVVKA-A--AGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (254)
Q Consensus 87 g~~~~~~~p-~~v~~~~~~~i~~I-a--~G~~hs~aLt~~G~vy~wG~n~~GQLG~ 138 (254)
...- ..+.+..+..++.+ . -+.++-+++|++|++.-+-.++.-.+|+
T Consensus 119 -----~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 119 -----NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp -----STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred -----CcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 0001 11222222333332 2 3677899999999999987777655553
No 35
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Probab=35.25 E-value=1.1e+02 Score=22.40 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred CCceEEEecCCCeEEEEeCCCcEEE
Q 025335 50 DSWKDVCGGGCGFALATSESGKLIT 74 (254)
Q Consensus 50 ~~i~~V~~~g~~hs~aLt~~G~vy~ 74 (254)
..++.|..+-.+.-+|++++|+||+
T Consensus 60 ~G~V~I~gv~s~~YLcMn~~G~Lyg 84 (146)
T 1bfg_A 60 RGVVSIKGVSANRYLAMKEDGRLLA 84 (146)
T ss_dssp TTEEEEEETTTTEEEEECTTSCEEE
T ss_pred CCEEEEEEcccCcEEEEcCCCCEec
Confidence 3456666655568899999999997
No 36
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=34.58 E-value=1.2e+02 Score=25.95 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=56.7
Q ss_pred eEEEecCCcEEEccCCCCCCCC-----------CCCcccc-eeeeecCCCCceEEEecCCCeEEEEeCCCcEEEEecCCC
Q 025335 13 KMEECKETVVYMWGYLPGTSPE-----------KSPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADD 80 (254)
Q Consensus 13 ~~~vt~~G~vy~wG~n~g~~~~-----------~~~~~~p-~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~wG~n~~ 80 (254)
.|+++....++.-|.+++..-- ....+.| ..+.+. . +..++. .+-.+++.++|.|..|=.. .
T Consensus 42 lLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp--~-V~~l~f--d~~~L~v~~~~~l~v~dv~-s 115 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIP--D-VIFVCF--HGDQVLVSTRNALYSLDLE-E 115 (388)
T ss_dssp CEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECT--T-EEEEEE--ETTEEEEEESSEEEEEESS-S
T ss_pred EEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCC--C-eeEEEE--CCCEEEEEcCCcEEEEEch-h
Confidence 6888888888777765421000 0000233 222222 2 667776 4566777788888888655 2
Q ss_pred CCccccCCCCCCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCC
Q 025335 81 EGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 81 ~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n 131 (254)
.-+. ..+... ...+.+|.+-....++++.+|.|+.|=..
T Consensus 116 l~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 116 LSEF-----------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp TTCE-----------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred hhcc-----------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 2221 111111 23356666665567778999999999443
No 37
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=34.13 E-value=1.1e+02 Score=27.94 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=38.6
Q ss_pred CeEEEEeCCCcEEEEecCCCCCccccCCCCCCCCcEEecCCCCCceEEEE----eCCCeEEE-EEcCCcEEEEcCCCCC
Q 025335 61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAA----AGWAHCVS-VTEAGEVYTWGWRECV 134 (254)
Q Consensus 61 ~hs~aLt~~G~vy~wG~n~~~GqLG~g~~~~~~~p~~v~~~~~~~i~~Ia----~G~~hs~a-Lt~~G~vy~wG~n~~G 134 (254)
.|++++..+|+||..|.. ..++. .+.......+...... ..+...++ .-.+|+++ +..+|+||+.|-+..+
T Consensus 458 ~~~~~~l~~g~i~v~GG~-~~~~~-~~~~~~~~~v~~ydp~-t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQ-RRGIP-FEDSTPVFTPEIYVPE-QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCB-SBCCT-TCCCSBCCCCEEEEGG-GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCc-ccCcC-cCCCCcccceEEEcCC-CCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 388888889999999976 34431 1111112222222111 11222221 23467654 5579999999987653
No 38
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.34 E-value=1.6e+02 Score=24.33 Aligned_cols=122 Identities=15% Similarity=0.032 Sum_probs=63.4
Q ss_pred CCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEE-ecCCCeEEEEeCCCcEEEEecCCCCCccccC
Q 025335 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVC-GGGCGFALATSESGKLITWGSADDEGQSYLT 87 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~-~~g~~hs~aLt~~G~vy~wG~n~~~GqLG~g 87 (254)
++...+.+|.+|.+---=..+-..... ...-..-+....+..+..+. +-...+.+++|+.|++|..-.. ..-..|..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~-~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~-~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY-EIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG-GSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhcccc-CCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH-HCCCCCcc
Confidence 344568889999886442111000000 00001112222333343322 2134489999999999999765 22222111
Q ss_pred CCCCCCCcEEecCCCCCceEEEEeC-----CCeEEEEEcCCcEEEEcCCCC
Q 025335 88 SGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~Ia~G-----~~hs~aLt~~G~vy~wG~n~~ 133 (254)
. .=......+++..+..|+.+.+. ..+-+++|++|.++-.-..++
T Consensus 85 ~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~ 134 (312)
T 1suu_A 85 S-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDF 134 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG
T ss_pred C-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHh
Confidence 0 00011223455567788887664 356888999999998876655
No 39
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A
Probab=30.68 E-value=81 Score=22.97 Aligned_cols=58 Identities=14% Similarity=-0.031 Sum_probs=32.1
Q ss_pred CCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEE
Q 025335 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74 (254)
Q Consensus 9 ~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~ 74 (254)
..+..|.|..||.|-.-.. ...+...-....+. ..++.|..+-.+.-+|++++|+||+
T Consensus 18 r~g~~L~I~~dG~V~Gt~~------~~~~~s~l~~~sv~--~g~V~I~gv~s~~YLcmn~~G~Lyg 75 (140)
T 1qql_A 18 RTQWYLRIDKRGKVKGTQE------MRNSYNIMEIRTVA--VGIVAIKGVESEYYLAMNKEGKLYA 75 (140)
T ss_dssp TTTEEEEECTTCCEEEESC------TTCSTTCEEEEEEE--TTEEEEEETTTCCCCEECTTSCEEC
T ss_pred cCCeEEEECCCCeEEeecC------CCCCceEEEEEeec--CCEEEEEEcccCcEEEEcCCCCEEe
Confidence 3355788888888854321 11111111111111 2355566555557889999999985
No 40
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A*
Probab=29.17 E-value=1.6e+02 Score=22.30 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=32.4
Q ss_pred CcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEE
Q 025335 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~ 74 (254)
.+..|.+..||.|-.-.. ...+...-....+ ...++.|..+-.+.-+|+++.|+||+
T Consensus 36 ~g~~LqI~~dG~V~Gt~~------~~s~~silei~sv--~~g~V~I~gv~s~~YLcMn~~G~Lyg 92 (174)
T 1ihk_A 36 TGFHLEIFPNGTIQGTRK------DHSRFGILEFISI--AVGLVSIRGVDSGLYLGMNEKGELYG 92 (174)
T ss_dssp TSCEEEECTTSCEEEESS------TTCGGGCEEEEEE--ETTEEEEEETTTCCEEEECTTCCEEE
T ss_pred CCcEEEECCCCcEEeecC------CCCCcceEEEEec--cCceEEEEEcccCcEEEEcCCCCEec
Confidence 345677888888754331 1111111111112 12355666655568899999999997
No 41
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=29.08 E-value=2.4e+02 Score=23.10 Aligned_cols=115 Identities=9% Similarity=0.023 Sum_probs=64.7
Q ss_pred CcceEEEecCCcEEEccCCC----CCCCCCCCcccceeeeecCCCCceEEEecC---CC-eEEEEeCCCcEEEEecCCCC
Q 025335 10 ENEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG---CG-FALATSESGKLITWGSADDE 81 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~----g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g---~~-hs~aLt~~G~vy~wG~n~~~ 81 (254)
.+..+++|+.|++|..-..+ +....+.+ ....+++..+..|..+..+. .. +-+++|++|.+.-.-..+ +
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e-~ 129 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRP--IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE-F 129 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG-G
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE--hhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHH-h
Confidence 44588999999999987543 11112221 11223344555666554421 22 577789999888775441 2
Q ss_pred CccccCCCCCCCCc-EEecCCCCCceEEE--EeCCCeEEEEEcCCcEEEEcCCCCC
Q 025335 82 GQSYLTSGKHGETP-EPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWRECV 134 (254)
Q Consensus 82 GqLG~g~~~~~~~p-~~v~~~~~~~i~~I--a~G~~hs~aLt~~G~vy~wG~n~~G 134 (254)
-.. .... ..+.+..+..++.+ ..+.++-+++|++|+++-+-..+.-
T Consensus 130 ~~~-------~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~ 178 (307)
T 1zi0_A 130 NRL-------RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 178 (307)
T ss_dssp TTC-------CTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSC
T ss_pred hcc-------ccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcC
Confidence 111 0011 11233334455443 3467788999999999998665543
No 42
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=28.44 E-value=2.3e+02 Score=22.63 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=12.9
Q ss_pred CeEEEEeCCCcEEEEecC
Q 025335 61 GFALATSESGKLITWGSA 78 (254)
Q Consensus 61 ~hs~aLt~~G~vy~wG~n 78 (254)
+|++++ -+++||.+|..
T Consensus 141 ~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred ceeEEE-ECCEEEEEeCC
Confidence 377666 67799999965
No 43
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=28.09 E-value=2.4e+02 Score=22.77 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=18.2
Q ss_pred eEEEEeCC-CeEEEEEcCCcEEEEcCCCC
Q 025335 106 VVKAAAGW-AHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 106 i~~Ia~G~-~hs~aLt~~G~vy~wG~n~~ 133 (254)
+..|..|. -+.++++.+|++|.-....+
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCBC
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCCc
Confidence 33444443 36788888999888766553
No 44
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=27.22 E-value=2.7e+02 Score=23.07 Aligned_cols=121 Identities=9% Similarity=-0.056 Sum_probs=69.1
Q ss_pred CcceEEEecCCcEEEccCCC----CCCCCCCCcccceeeeecCCCCceEEEecCC----CeEEEEeCCCcEEEEecCCCC
Q 025335 10 ENEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGGC----GFALATSESGKLITWGSADDE 81 (254)
Q Consensus 10 ~~~~~~vt~~G~vy~wG~n~----g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~----~hs~aLt~~G~vy~wG~n~~~ 81 (254)
.+..+++|+.|++|..-..+ +....+.+ ....+++..+.+|..+..+.. .+.+++|++|.+.-.-..+ +
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e-~ 126 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKH-Y 126 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGG-G
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHH-h
Confidence 44589999999999987543 21122222 112233445566665544332 2578889999888776552 2
Q ss_pred CccccCCCCCCCCcEEecCCCCCceEEE--EeCCCeEEEEEcCCcEEEEcCCCCCCCCC
Q 025335 82 GQSYLTSGKHGETPEPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (254)
Q Consensus 82 GqLG~g~~~~~~~p~~v~~~~~~~i~~I--a~G~~hs~aLt~~G~vy~wG~n~~GQLG~ 138 (254)
-... ...--..+.+..+..++.+ ..+.++-+++|++|+++-+-.++.-..|+
T Consensus 127 ~~~~-----r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 127 KAQR-----YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp CCSC-----CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred hhcc-----ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 1110 0000112233334445443 34778899999999999987766544443
No 45
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=26.41 E-value=2.2e+02 Score=21.92 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=12.6
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
..++++.+|++|.-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 56778888888877654
No 46
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C
Probab=26.36 E-value=1.9e+02 Score=22.35 Aligned_cols=59 Identities=15% Similarity=0.021 Sum_probs=31.8
Q ss_pred cCCcceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEE
Q 025335 8 REENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLIT 74 (254)
Q Consensus 8 ~~~~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~ 74 (254)
|..+..|.|..||.|-.- .....+...-....+ +..++.|..+-.+.-+|++.+|+||+
T Consensus 23 cr~G~hLqI~~dG~V~GT------~~~~s~~slLei~sv--~~GvV~IkGv~S~~YLcMn~~G~Lyg 81 (193)
T 3hbw_A 23 SRQGYHLQLQADGTIDGT------KDEDSTYTLFNLIPV--GLRVVAIQGVQTKLYLAMNSEGYLYT 81 (193)
T ss_dssp ETTSCEEEECTTSCEEEE------SCTTCGGGCEEEEEE--ETTEEEEEETTTCCEEEECTTSCEEE
T ss_pred EcCCeEEEEcCCCcEEcc------cCCCCCceEEEEEec--cCCEEEEEEeeceeEEEEcCCCCCcc
Confidence 344556777777777422 111111111111111 22455566554558899999999995
No 47
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=25.38 E-value=1.3e+02 Score=23.63 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=13.4
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
+.++++.+|++|.....
T Consensus 72 ~~l~~~~dg~l~v~~~~ 88 (296)
T 3e5z_A 72 NGHCLNKQGHLIACSHG 88 (296)
T ss_dssp EEEEECTTCCEEEEETT
T ss_pred ceeeECCCCcEEEEecC
Confidence 67888899999876544
No 48
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=25.04 E-value=2.3e+02 Score=21.67 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=13.5
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
+.++++.+|++|.....
T Consensus 107 ~~i~~~~~g~l~v~~~~ 123 (300)
T 2qc5_A 107 YGITEGLNGDIWFTQLN 123 (300)
T ss_dssp EEEEECSTTCEEEEETT
T ss_pred ccceECCCCCEEEEccC
Confidence 78888889999877654
No 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=24.89 E-value=2.5e+02 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.3
Q ss_pred CCCeEEEEEcCCcEEEEc
Q 025335 112 GWAHCVSVTEAGEVYTWG 129 (254)
Q Consensus 112 G~~hs~aLt~~G~vy~wG 129 (254)
....-++.+.+|.||.|-
T Consensus 1229 dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1229 DFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp SSCCEEEECTTCCEEEEC
T ss_pred CCCEEEEecCCcEEEEEe
Confidence 344566778899999994
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=24.55 E-value=2.5e+02 Score=21.83 Aligned_cols=25 Identities=12% Similarity=0.055 Sum_probs=14.7
Q ss_pred CceEEEEeC--CCeEEEEEcCCcEEEE
Q 025335 104 ASVVKAAAG--WAHCVSVTEAGEVYTW 128 (254)
Q Consensus 104 ~~i~~Ia~G--~~hs~aLt~~G~vy~w 128 (254)
..|..++.. ..+-++-+.+|.|+.|
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 446555543 2344555677888877
No 51
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1
Probab=24.50 E-value=1.9e+02 Score=20.51 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=32.5
Q ss_pred cceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCCeEEEEeCCCcEEEE
Q 025335 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITW 75 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~hs~aLt~~G~vy~w 75 (254)
+..|.+..||.|-.-.. +. + ..-..+... ...++.|..+-.+.-+|++++|+||+-
T Consensus 15 g~~LqI~~dG~V~Gt~~------~~-~-~s~l~~~sv-~~g~V~I~gv~s~~YLcmn~~G~Lygs 70 (128)
T 1ijt_A 15 GFHLQALPDGRIGGAHA------DT-R-DSLLELSPV-ERGVVSIFGVASRFFVAMSSKGKLYGS 70 (128)
T ss_dssp CEEEEECTTSCEEEESS------CC-G-GGCEEEEEE-ETTEEEEEETTTTEEEEECTTCCEEEE
T ss_pred CeEEEECCCCcEecccC------CC-c-cceEEEEec-cCCEEEEEEcccCcEEEEcCCCCEEcc
Confidence 45688888998854331 11 1 111111111 123556666555688999999999974
No 52
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=24.22 E-value=2.4e+02 Score=21.56 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=13.3
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
+.++++.+|++|.-...
T Consensus 144 ~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQ 160 (299)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred ceEEEcCCCCEEEEeCC
Confidence 67888889999976544
No 53
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.66 E-value=2.5e+02 Score=22.33 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=60.7
Q ss_pred cceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEec-CCCeEEEEeCCCcEEEEecCCCCCccccCCC
Q 025335 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSG 89 (254)
Q Consensus 11 ~~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~-g~~hs~aLt~~G~vy~wG~n~~~GqLG~g~~ 89 (254)
...+.+|.+|.+-.--... . ....+....+..+..+... ...+.+++|+.|++|..-..+ .-.. ....
T Consensus 3 ~v~v~lT~~G~iKr~~~~~--~-------~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e-lp~~-r~~G 71 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHD--I-------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT-LPSA-RGQG 71 (256)
T ss_dssp EEEEEEETTSEEEEEESSC--C-------CSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGG-SCCS-SSCC
T ss_pred CEEEEEeCCCEEEEeeCCc--C-------CceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH-CCCc-CCCC
Confidence 3457789999885433110 0 0111222333444443321 334789999999999998762 2110 0000
Q ss_pred CCCCCcEEecCCCCCceEEEEeC--CCeEEEEEcCCcEEEEcCCCC
Q 025335 90 KHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGWREC 133 (254)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~Ia~G--~~hs~aLt~~G~vy~wG~n~~ 133 (254)
. .....+++..+..|+.+.+. ..+-+++|++|.+.-.-..++
T Consensus 72 ~--~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 72 E--PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp E--EGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred e--EeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 0 01113445567788888763 345777899998887765554
No 54
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=23.42 E-value=2.5e+02 Score=21.46 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=13.2
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
+.++++.+|++|.-...
T Consensus 102 ~~i~~~~~g~l~v~~~~ 118 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN 118 (299)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred eeeEECCCCCEEEEecC
Confidence 77888888999876544
No 55
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=22.76 E-value=2.8e+02 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=12.5
Q ss_pred CeEEEEeCCCcEEEEecC
Q 025335 61 GFALATSESGKLITWGSA 78 (254)
Q Consensus 61 ~hs~aLt~~G~vy~wG~n 78 (254)
.|++++. ++++|..|..
T Consensus 197 ~~~~~~~-~~~iyv~GG~ 213 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGGH 213 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cccEEEE-CCEEEEECCC
Confidence 3766654 6899999865
No 56
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=22.26 E-value=51 Score=23.68 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.5
Q ss_pred EEEEeCCCcEEEEecC
Q 025335 63 ALATSESGKLITWGSA 78 (254)
Q Consensus 63 s~aLt~~G~vy~wG~n 78 (254)
++++++||++|+ |.|
T Consensus 31 Aal~~~dG~i~~-G~N 45 (130)
T 2z3g_A 31 SAALSSDGRIFT-GVN 45 (130)
T ss_dssp EEEEETTSCEEE-EEC
T ss_pred EEEEecCCeEEE-Eec
Confidence 456789999996 999
No 57
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=21.63 E-value=3e+02 Score=21.78 Aligned_cols=27 Identities=0% Similarity=-0.229 Sum_probs=14.4
Q ss_pred CceEEEEeC--CCeEEEEEcCCcEEEEcC
Q 025335 104 ASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 104 ~~i~~Ia~G--~~hs~aLt~~G~vy~wG~ 130 (254)
..|..++.. ...-++-+.+|.|+.|=.
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 345555543 233444456777777743
No 58
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=21.59 E-value=3e+02 Score=21.69 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.4
Q ss_pred eEEEEeCCCcEEEEecC
Q 025335 62 FALATSESGKLITWGSA 78 (254)
Q Consensus 62 hs~aLt~~G~vy~wG~n 78 (254)
+.++++.+|++|.....
T Consensus 90 ~~i~~~~dg~l~v~~~~ 106 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLG 106 (333)
T ss_dssp EEEEECTTSCEEEEECT
T ss_pred ceEEECCCCcEEEEeCC
Confidence 67888888998887654
No 59
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=21.29 E-value=76 Score=21.34 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=19.0
Q ss_pred EEEecCCeEEEEecCCccccc
Q 025335 216 KVAAGGRHTLILSGKSLESAE 236 (254)
Q Consensus 216 ~Ia~G~~hs~~Lt~~G~v~~~ 236 (254)
.|-+|.+||++-..+|.|..+
T Consensus 50 NVg~GkD~TLfAl~~G~V~f~ 70 (91)
T 2zjr_T 50 GVGMGRDHTLFALSDGKVVFI 70 (91)
T ss_dssp TEECCTTSCEEESSCEEEEEE
T ss_pred CEEEcCCCcEEeccceEEEEE
Confidence 578999999999999998886
No 60
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=20.78 E-value=1.9e+02 Score=23.60 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.0
Q ss_pred CCeEEEEEcCCcEEEEcC
Q 025335 113 WAHCVSVTEAGEVYTWGW 130 (254)
Q Consensus 113 ~~hs~aLt~~G~vy~wG~ 130 (254)
..|++++. +|+||++|=
T Consensus 57 ~~~~~~~~-~~~lyv~GG 73 (357)
T 2uvk_A 57 DQATSAFI-DGNLYVFGG 73 (357)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEEcC
Confidence 46777766 689999983
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.38 E-value=3.6e+02 Score=22.10 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=53.6
Q ss_pred ceEEEecCCcEEEccCCCCCCCCCCCcccceeeeecCCCCceEEEecCCC-eEEEEeCCCcEEEEecCCCCCccccCCCC
Q 025335 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGK 90 (254)
Q Consensus 12 ~~~~vt~~G~vy~wG~n~g~~~~~~~~~~p~~v~~~~~~~i~~V~~~g~~-hs~aLt~~G~vy~wG~n~~~GqLG~g~~~ 90 (254)
..++...+|.|+.|-...+... ..........+..++-...+ +.++-+.+|.|+.|-.. . ++.
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~--------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~-~~~------ 168 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVS--------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-S-QTK------ 168 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEE--------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-T-CCE------
T ss_pred CEEEEECCCeEEEeeCCCCcEe--------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-C-CeE------
Confidence 3678889999999976543211 11111123344455442222 44445567888888654 2 111
Q ss_pred CCCCcEEecCCCCCceEEEEeCCCeEEEEEcCCcEEEEcCC
Q 025335 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (254)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~Ia~G~~hs~aLt~~G~vy~wG~n 131 (254)
...+. .....|..++...+..+.-+.+|.|+.|=..
T Consensus 169 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 169 ----LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp ----EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred ----EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecc
Confidence 11111 1234566666655666666778888888554
Done!