Query 025340
Match_columns 254
No_of_seqs 201 out of 808
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584 cAMP response element 99.4 1.1E-12 2.4E-17 122.3 12.1 59 168-226 283-341 (348)
2 smart00338 BRLZ basic region l 99.4 5.5E-12 1.2E-16 91.9 9.2 54 173-226 2-55 (65)
3 PF00170 bZIP_1: bZIP transcri 99.3 2.5E-11 5.4E-16 88.3 9.2 54 173-226 2-55 (64)
4 KOG4343 bZIP transcription fac 99.3 1.6E-11 3.5E-16 121.7 8.9 73 168-240 273-345 (655)
5 PF07716 bZIP_2: Basic region 99.2 1.1E-10 2.5E-15 82.8 8.5 52 173-225 2-53 (54)
6 KOG4005 Transcription factor X 99.1 3.9E-10 8.4E-15 103.2 10.5 66 160-226 54-119 (292)
7 KOG0709 CREB/ATF family transc 99.1 1E-10 2.3E-15 114.1 6.0 67 168-235 243-309 (472)
8 KOG4571 Activating transcripti 98.3 8.9E-06 1.9E-10 76.2 11.1 51 176-226 227-277 (294)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.1 1.6E-07 3.5E-12 73.2 -2.9 57 169-225 23-79 (92)
10 KOG0837 Transcriptional activa 97.9 6.5E-05 1.4E-09 69.8 8.9 62 176-238 206-267 (279)
11 KOG3119 Basic region leucine z 97.8 0.00024 5.2E-09 65.3 11.3 69 164-233 182-250 (269)
12 KOG4196 bZIP transcription fac 96.8 0.0082 1.8E-07 51.1 8.5 56 171-226 48-110 (135)
13 KOG3863 bZIP transcription fac 96.5 0.0041 8.9E-08 63.4 5.4 49 178-226 492-540 (604)
14 KOG1414 Transcriptional activa 96.1 0.00061 1.3E-08 65.5 -2.6 70 168-238 146-219 (395)
15 KOG1414 Transcriptional activa 95.2 0.0035 7.6E-08 60.4 -1.1 62 165-226 274-336 (395)
16 KOG3119 Basic region leucine z 89.2 19 0.0004 33.4 15.0 56 171-226 193-251 (269)
17 KOG1318 Helix loop helix trans 88.3 9.2 0.0002 38.1 12.4 33 194-226 287-319 (411)
18 PRK00888 ftsB cell division pr 86.6 1.8 3.8E-05 35.0 5.4 42 192-235 29-70 (105)
19 PF08172 CASP_C: CASP C termin 86.6 2.6 5.7E-05 38.8 7.1 38 198-236 94-131 (248)
20 PF04977 DivIC: Septum formati 85.3 2.9 6.2E-05 30.4 5.5 31 193-223 20-50 (80)
21 PF12709 Kinetocho_Slk19: Cent 84.7 4.5 9.6E-05 32.4 6.7 38 196-234 48-85 (87)
22 PHA03155 hypothetical protein; 83.2 2.1 4.5E-05 35.9 4.4 26 197-222 8-33 (115)
23 PHA03162 hypothetical protein; 82.9 1 2.2E-05 38.6 2.6 28 194-221 10-37 (135)
24 PF05812 Herpes_BLRF2: Herpesv 82.8 2.2 4.7E-05 35.9 4.4 29 195-223 1-29 (118)
25 PF06005 DUF904: Protein of un 82.5 7 0.00015 29.9 6.7 29 198-226 26-54 (72)
26 PRK10884 SH3 domain-containing 82.4 17 0.00036 32.8 10.2 33 194-226 122-154 (206)
27 PF15058 Speriolin_N: Sperioli 81.8 2.4 5.3E-05 38.4 4.6 34 199-232 7-40 (200)
28 TIGR02449 conserved hypothetic 81.2 7.7 0.00017 29.4 6.4 37 198-235 8-44 (65)
29 PF01166 TSC22: TSC-22/dip/bun 80.9 2.8 6E-05 31.5 3.9 19 199-217 23-41 (59)
30 KOG4571 Activating transcripti 79.7 36 0.00078 32.7 11.8 78 147-226 204-284 (294)
31 PF02183 HALZ: Homeobox associ 79.6 5.8 0.00012 27.9 5.0 26 200-225 15-40 (45)
32 PF07558 Shugoshin_N: Shugoshi 79.5 2.3 4.9E-05 29.9 2.9 43 178-221 3-45 (46)
33 KOG4005 Transcription factor X 79.3 25 0.00055 33.3 10.5 62 165-226 62-126 (292)
34 PF03980 Nnf1: Nnf1 ; InterPr 78.8 4.2 9.1E-05 32.2 4.6 33 193-225 76-108 (109)
35 KOG4343 bZIP transcription fac 78.3 9.9 0.00021 39.5 8.1 63 164-226 273-338 (655)
36 TIGR02209 ftsL_broad cell divi 78.3 9.1 0.0002 28.5 6.1 32 194-225 28-59 (85)
37 PRK10803 tol-pal system protei 76.9 23 0.0005 32.5 9.5 42 194-235 58-99 (263)
38 PF00170 bZIP_1: bZIP transcri 76.3 26 0.00056 25.2 9.0 56 171-226 4-62 (64)
39 KOG4031 Vesicle coat protein c 75.8 67 0.0015 29.7 13.1 57 168-224 103-160 (216)
40 KOG4797 Transcriptional regula 75.0 28 0.0006 29.4 8.6 26 193-218 70-95 (123)
41 PF05266 DUF724: Protein of un 75.0 13 0.00028 33.1 7.1 10 245-254 181-190 (190)
42 TIGR02894 DNA_bind_RsfA transc 74.6 21 0.00046 31.5 8.2 35 193-227 107-141 (161)
43 PF15236 CCDC66: Coiled-coil d 74.4 60 0.0013 28.5 11.9 21 170-190 46-66 (157)
44 PF13863 DUF4200: Domain of un 73.3 44 0.00096 26.5 9.9 57 177-235 61-117 (126)
45 PHA00728 hypothetical protein 73.1 3.4 7.3E-05 35.5 2.9 26 204-229 5-30 (151)
46 PF10473 CENP-F_leu_zip: Leuci 73.1 50 0.0011 28.3 9.9 54 173-226 28-81 (140)
47 PF05377 FlaC_arch: Flagella a 72.9 15 0.00032 27.2 5.8 30 200-229 10-39 (55)
48 PF12709 Kinetocho_Slk19: Cent 72.1 17 0.00038 29.1 6.5 42 193-234 38-79 (87)
49 PF13851 GAS: Growth-arrest sp 72.0 55 0.0012 29.1 10.4 52 175-226 71-122 (201)
50 PF06156 DUF972: Protein of un 71.6 11 0.00024 30.8 5.4 27 199-225 24-50 (107)
51 PF06005 DUF904: Protein of un 70.8 23 0.00049 27.1 6.6 27 199-225 20-46 (72)
52 PF11500 Cut12: Spindle pole b 70.7 36 0.00079 29.7 8.7 54 172-225 80-133 (152)
53 KOG0709 CREB/ATF family transc 70.5 15 0.00032 37.3 7.1 62 165-226 244-315 (472)
54 PRK13169 DNA replication intia 69.7 8.9 0.00019 31.6 4.5 30 194-223 26-55 (110)
55 KOG3335 Predicted coiled-coil 69.6 17 0.00037 32.7 6.6 46 174-225 89-134 (181)
56 PF06156 DUF972: Protein of un 69.4 9.3 0.0002 31.2 4.6 33 193-225 25-57 (107)
57 PF05377 FlaC_arch: Flagella a 68.8 20 0.00043 26.6 5.7 28 199-226 2-29 (55)
58 PF12999 PRKCSH-like: Glucosid 68.6 34 0.00073 30.5 8.2 37 189-225 138-174 (176)
59 PRK13922 rod shape-determining 68.1 16 0.00035 33.0 6.3 47 191-237 63-111 (276)
60 smart00340 HALZ homeobox assoc 68.0 13 0.00029 26.4 4.4 26 200-225 8-33 (44)
61 PF05529 Bap31: B-cell recepto 67.5 30 0.00065 29.8 7.6 7 205-211 162-168 (192)
62 PF05529 Bap31: B-cell recepto 67.2 44 0.00095 28.8 8.5 14 208-221 158-171 (192)
63 KOG1151 Tousled-like protein k 66.8 51 0.0011 34.4 10.0 23 202-224 245-267 (775)
64 PF07047 OPA3: Optic atrophy 3 66.7 12 0.00026 31.2 4.8 19 198-216 113-131 (134)
65 PF07407 Seadorna_VP6: Seadorn 66.1 13 0.00028 36.7 5.5 25 201-225 36-60 (420)
66 PRK14474 F0F1 ATP synthase sub 65.9 85 0.0018 28.7 10.5 59 171-229 31-89 (250)
67 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.2 41 0.00089 27.6 7.7 18 207-224 101-118 (132)
68 PRK13169 DNA replication intia 65.1 18 0.00039 29.9 5.4 32 197-228 22-53 (110)
69 PF11559 ADIP: Afadin- and alp 64.9 61 0.0013 26.8 8.7 50 177-226 46-95 (151)
70 TIGR03752 conj_TIGR03752 integ 64.9 12 0.00025 38.0 5.1 7 149-155 41-47 (472)
71 PF12808 Mto2_bdg: Micro-tubul 64.0 14 0.0003 27.0 4.1 27 199-225 24-50 (52)
72 PF04999 FtsL: Cell division p 63.8 23 0.0005 27.2 5.6 29 198-226 43-71 (97)
73 KOG4364 Chromatin assembly fac 62.8 1.2E+02 0.0025 32.8 11.9 8 208-215 287-294 (811)
74 PF01920 Prefoldin_2: Prefoldi 62.2 47 0.001 25.1 7.0 42 197-239 62-103 (106)
75 PF08537 NBP1: Fungal Nap bind 62.0 64 0.0014 31.4 9.3 21 175-195 121-141 (323)
76 PF01486 K-box: K-box region; 61.8 44 0.00096 26.0 6.9 33 189-221 63-99 (100)
77 PRK05759 F0F1 ATP synthase sub 61.4 91 0.002 25.6 10.3 62 170-231 29-90 (156)
78 PF10224 DUF2205: Predicted co 61.0 80 0.0017 24.8 8.7 28 198-225 31-58 (80)
79 PF14197 Cep57_CLD_2: Centroso 60.8 47 0.001 25.2 6.6 37 179-222 29-65 (69)
80 KOG3433 Protein involved in me 60.3 56 0.0012 29.9 8.0 50 177-226 96-145 (203)
81 KOG1029 Endocytic adaptor prot 59.9 60 0.0013 35.6 9.4 8 151-158 308-315 (1118)
82 PRK00888 ftsB cell division pr 58.9 26 0.00057 28.2 5.3 19 200-218 44-62 (105)
83 PF10186 Atg14: UV radiation r 57.7 1.3E+02 0.0029 26.5 10.1 27 196-222 69-95 (302)
84 PF14077 WD40_alt: Alternative 57.6 9.2 0.0002 27.7 2.2 23 196-218 17-39 (48)
85 KOG2391 Vacuolar sorting prote 57.6 2.1E+02 0.0044 28.5 12.2 46 181-226 225-275 (365)
86 COG2433 Uncharacterized conser 57.5 46 0.00099 35.1 7.9 27 198-224 437-463 (652)
87 KOG3088 Secretory carrier memb 57.4 58 0.0013 31.5 8.1 24 201-224 68-91 (313)
88 PF13805 Pil1: Eisosome compon 57.0 36 0.00078 32.2 6.6 39 198-239 166-204 (271)
89 PF14645 Chibby: Chibby family 56.6 42 0.0009 27.8 6.2 31 200-230 74-104 (116)
90 PF07716 bZIP_2: Basic region 56.6 66 0.0014 22.5 8.0 49 171-219 3-54 (54)
91 PRK14472 F0F1 ATP synthase sub 56.4 1.3E+02 0.0027 25.7 10.2 54 170-223 43-96 (175)
92 PRK13454 F0F1 ATP synthase sub 56.3 1.3E+02 0.0029 26.0 10.2 51 170-220 56-106 (181)
93 PF04568 IATP: Mitochondrial A 56.2 75 0.0016 25.9 7.5 44 182-225 54-97 (100)
94 PRK14127 cell division protein 56.0 26 0.00057 28.9 4.9 27 199-225 39-65 (109)
95 PRK14127 cell division protein 55.7 34 0.00073 28.3 5.5 30 197-226 30-59 (109)
96 PF05103 DivIVA: DivIVA protei 55.4 13 0.00029 29.4 3.1 29 197-225 25-53 (131)
97 PF02403 Seryl_tRNA_N: Seryl-t 55.4 36 0.00077 26.6 5.4 29 198-226 68-96 (108)
98 PRK14471 F0F1 ATP synthase sub 55.3 1.3E+02 0.0027 25.3 10.1 51 170-220 33-83 (164)
99 cd07429 Cby_like Chibby, a nuc 54.7 28 0.0006 28.9 4.9 22 205-226 80-101 (108)
100 PRK07352 F0F1 ATP synthase sub 54.5 1.4E+02 0.0029 25.5 10.5 57 170-226 44-100 (174)
101 PLN02320 seryl-tRNA synthetase 54.3 58 0.0013 33.3 8.0 49 183-231 116-164 (502)
102 PF09726 Macoilin: Transmembra 54.3 94 0.002 32.9 9.7 23 202-224 543-565 (697)
103 TIGR00219 mreC rod shape-deter 52.6 42 0.00092 31.2 6.3 20 201-220 70-89 (283)
104 PF06424 PRP1_N: PRP1 splicing 52.5 1.1E+02 0.0024 26.2 8.2 53 173-225 63-118 (133)
105 PF01166 TSC22: TSC-22/dip/bun 52.2 33 0.00071 25.9 4.4 28 198-225 15-42 (59)
106 PRK13729 conjugal transfer pil 52.2 38 0.00082 34.5 6.2 10 201-210 80-89 (475)
107 PF04977 DivIC: Septum formati 51.8 48 0.001 23.8 5.3 26 200-225 20-45 (80)
108 PF06210 DUF1003: Protein of u 51.5 1.1E+02 0.0024 25.0 7.8 45 178-222 52-98 (108)
109 PRK13461 F0F1 ATP synthase sub 51.0 1.4E+02 0.0031 24.8 10.2 51 170-220 30-80 (159)
110 PF04111 APG6: Autophagy prote 51.0 1.5E+02 0.0033 28.1 9.8 34 193-226 60-93 (314)
111 COG2433 Uncharacterized conser 50.8 36 0.00078 35.8 6.0 27 199-225 424-450 (652)
112 PF05300 DUF737: Protein of un 50.3 1.3E+02 0.0027 27.1 8.6 42 185-226 122-163 (187)
113 PF11932 DUF3450: Protein of u 50.0 1.8E+02 0.004 26.1 9.8 31 196-226 69-99 (251)
114 PRK13428 F0F1 ATP synthase sub 49.8 1.9E+02 0.004 28.7 10.5 52 170-221 26-77 (445)
115 PF07047 OPA3: Optic atrophy 3 49.6 34 0.00073 28.5 4.7 25 200-224 108-132 (134)
116 PRK15422 septal ring assembly 49.6 75 0.0016 25.2 6.3 23 200-222 21-43 (79)
117 PRK05431 seryl-tRNA synthetase 49.3 68 0.0015 31.5 7.4 33 198-230 67-99 (425)
118 TIGR00414 serS seryl-tRNA synt 49.2 1E+02 0.0022 30.3 8.6 34 199-232 71-104 (418)
119 KOG4797 Transcriptional regula 49.1 57 0.0012 27.6 5.8 42 197-238 67-108 (123)
120 CHL00118 atpG ATP synthase CF0 49.0 1.6E+02 0.0035 24.7 10.5 49 170-218 47-95 (156)
121 PRK11239 hypothetical protein; 48.9 30 0.00064 31.9 4.5 27 199-225 185-211 (215)
122 PF08172 CASP_C: CASP C termin 48.5 1.9E+02 0.0042 26.8 9.8 57 169-226 80-136 (248)
123 PRK09413 IS2 repressor TnpA; R 48.4 33 0.00071 27.6 4.3 18 201-218 82-99 (121)
124 PF03670 UPF0184: Uncharacteri 48.3 70 0.0015 25.5 6.0 38 197-234 33-70 (83)
125 PF02183 HALZ: Homeobox associ 48.1 77 0.0017 22.2 5.6 27 200-226 8-34 (45)
126 PRK13453 F0F1 ATP synthase sub 47.6 1.8E+02 0.0039 24.9 10.5 55 170-224 43-97 (173)
127 KOG1055 GABA-B ion channel rec 47.2 11 0.00024 40.5 1.8 52 175-226 725-781 (865)
128 smart00338 BRLZ basic region l 47.1 1E+02 0.0023 22.0 8.8 54 172-225 5-61 (65)
129 TIGR02449 conserved hypothetic 47.1 87 0.0019 23.8 6.1 22 202-223 26-47 (65)
130 COG4026 Uncharacterized protei 46.9 67 0.0015 30.4 6.6 22 204-225 149-170 (290)
131 PRK10884 SH3 domain-containing 46.9 2.2E+02 0.0047 25.7 9.7 31 195-225 130-160 (206)
132 PF14362 DUF4407: Domain of un 46.8 1.6E+02 0.0035 27.0 9.0 27 198-224 136-162 (301)
133 PF11853 DUF3373: Protein of u 46.4 20 0.00043 36.5 3.3 25 198-222 32-56 (489)
134 KOG4196 bZIP transcription fac 46.1 47 0.001 28.7 5.0 27 207-233 77-103 (135)
135 PF14257 DUF4349: Domain of un 45.7 92 0.002 28.0 7.2 39 188-226 153-191 (262)
136 KOG0288 WD40 repeat protein Ti 45.6 79 0.0017 32.1 7.2 27 196-222 47-73 (459)
137 PF09726 Macoilin: Transmembra 45.6 42 0.0009 35.5 5.6 21 200-220 548-568 (697)
138 PRK09174 F0F1 ATP synthase sub 45.3 2.3E+02 0.0049 25.3 10.4 47 170-216 78-124 (204)
139 PF06698 DUF1192: Protein of u 45.2 41 0.00089 25.1 4.0 25 199-223 23-47 (59)
140 KOG3648 Golgi apparatus protei 44.6 8.3 0.00018 41.2 0.4 21 63-83 82-103 (1179)
141 PF10211 Ax_dynein_light: Axon 44.3 2E+02 0.0043 25.4 8.9 25 200-224 123-147 (189)
142 TIGR00219 mreC rod shape-deter 44.3 44 0.00095 31.1 5.0 10 209-218 96-105 (283)
143 PF06305 DUF1049: Protein of u 44.3 32 0.0007 24.5 3.3 10 205-214 56-65 (68)
144 CHL00019 atpF ATP synthase CF0 44.2 2.1E+02 0.0045 24.6 10.3 55 170-224 49-103 (184)
145 PRK13729 conjugal transfer pil 44.1 96 0.0021 31.7 7.7 22 200-221 100-121 (475)
146 PF04340 DUF484: Protein of un 43.7 79 0.0017 27.9 6.3 26 200-225 43-68 (225)
147 TIGR01069 mutS2 MutS2 family p 43.7 2E+02 0.0044 30.6 10.3 9 155-163 473-481 (771)
148 PRK13922 rod shape-determining 43.5 1.3E+02 0.0028 27.2 7.8 16 209-224 74-89 (276)
149 KOG2002 TPR-containing nuclear 43.4 1.3E+02 0.0027 33.6 8.8 48 179-231 838-885 (1018)
150 COG1382 GimC Prefoldin, chaper 43.1 1.1E+02 0.0024 25.8 6.7 33 194-226 67-99 (119)
151 COG3879 Uncharacterized protei 43.1 1.4E+02 0.003 28.1 8.0 31 180-210 54-84 (247)
152 PRK14473 F0F1 ATP synthase sub 43.0 2E+02 0.0043 24.1 10.5 51 171-221 34-84 (164)
153 PF07888 CALCOCO1: Calcium bin 41.9 2.6E+02 0.0056 29.2 10.4 49 176-224 150-198 (546)
154 KOG2829 E2F-like protein [Tran 41.5 58 0.0013 31.6 5.4 18 193-210 149-166 (326)
155 COG3883 Uncharacterized protei 41.2 2.2E+02 0.0048 27.0 9.1 53 175-227 51-103 (265)
156 PF11221 Med21: Subunit 21 of 40.9 95 0.0021 26.0 6.1 34 202-236 102-135 (144)
157 KOG1029 Endocytic adaptor prot 40.8 1.8E+02 0.0039 32.1 9.3 6 201-206 372-377 (1118)
158 PRK09413 IS2 repressor TnpA; R 40.7 55 0.0012 26.3 4.5 24 201-224 75-98 (121)
159 KOG4643 Uncharacterized coiled 40.6 72 0.0016 35.7 6.5 41 193-233 526-567 (1195)
160 KOG3648 Golgi apparatus protei 40.5 17 0.00036 39.0 1.8 32 57-88 80-111 (1179)
161 COG1382 GimC Prefoldin, chaper 40.2 94 0.002 26.2 5.9 31 196-226 76-106 (119)
162 PTZ00234 variable surface prot 40.1 86 0.0019 31.4 6.6 36 184-219 384-428 (433)
163 PRK15422 septal ring assembly 40.1 1.2E+02 0.0026 24.1 6.1 14 199-212 27-40 (79)
164 PRK08475 F0F1 ATP synthase sub 40.0 2.4E+02 0.0052 24.1 10.5 51 170-220 47-97 (167)
165 TIGR01834 PHA_synth_III_E poly 39.8 44 0.00096 32.3 4.4 26 199-224 291-316 (320)
166 PRK13460 F0F1 ATP synthase sub 39.7 2.4E+02 0.0051 24.0 10.2 51 170-220 41-91 (173)
167 KOG1853 LIS1-interacting prote 39.5 1.4E+02 0.003 28.9 7.5 32 199-230 54-85 (333)
168 PF04849 HAP1_N: HAP1 N-termin 39.4 64 0.0014 31.1 5.4 26 199-224 162-187 (306)
169 TIGR02894 DNA_bind_RsfA transc 39.4 76 0.0016 28.1 5.4 23 202-224 109-131 (161)
170 PF12325 TMF_TATA_bd: TATA ele 39.2 2.3E+02 0.0049 23.6 9.3 14 177-190 38-51 (120)
171 PF11460 DUF3007: Protein of u 38.9 67 0.0014 26.6 4.7 19 215-233 82-100 (104)
172 PF10883 DUF2681: Protein of u 38.9 89 0.0019 25.0 5.3 16 206-221 32-47 (87)
173 PF08232 Striatin: Striatin fa 38.9 2.3E+02 0.005 23.7 9.1 55 180-234 15-69 (134)
174 PRK06231 F0F1 ATP synthase sub 38.5 2.8E+02 0.0062 24.6 10.5 53 170-222 73-125 (205)
175 PRK04325 hypothetical protein; 38.3 1.7E+02 0.0036 22.3 6.5 23 198-220 10-32 (74)
176 PLN02678 seryl-tRNA synthetase 38.2 1.7E+02 0.0036 29.5 8.3 34 196-229 70-103 (448)
177 KOG1265 Phospholipase C [Lipid 37.6 4.3E+02 0.0093 29.8 11.5 55 181-235 1033-1087(1189)
178 PF11382 DUF3186: Protein of u 37.3 62 0.0013 30.5 4.9 29 198-226 33-61 (308)
179 PF07407 Seadorna_VP6: Seadorn 37.2 34 0.00075 33.8 3.3 19 193-211 42-60 (420)
180 PF10168 Nup88: Nuclear pore c 37.1 3.1E+02 0.0067 29.2 10.4 33 196-228 578-610 (717)
181 COG3074 Uncharacterized protei 36.8 1.1E+02 0.0023 24.2 5.3 23 199-221 20-42 (79)
182 COG3132 Uncharacterized protei 36.7 47 0.001 30.4 3.8 25 200-224 188-212 (215)
183 COG2919 Septum formation initi 36.4 89 0.0019 25.4 5.1 27 200-226 60-86 (117)
184 PF10226 DUF2216: Uncharacteri 36.4 2.8E+02 0.006 25.4 8.6 54 172-225 19-76 (195)
185 PF09325 Vps5: Vps5 C terminal 36.4 2E+02 0.0043 24.7 7.6 27 199-225 165-191 (236)
186 COG4942 Membrane-bound metallo 36.2 2.6E+02 0.0056 28.2 9.2 30 193-222 55-84 (420)
187 PF06103 DUF948: Bacterial pro 36.1 1.7E+02 0.0037 22.1 6.4 28 199-226 28-55 (90)
188 PF01086 Clathrin_lg_ch: Clath 36.1 1.2E+02 0.0025 27.4 6.3 43 170-212 111-153 (225)
189 PF07439 DUF1515: Protein of u 36.0 1.5E+02 0.0033 24.9 6.4 40 186-225 29-68 (112)
190 KOG2483 Upstream transcription 35.8 93 0.002 28.8 5.7 33 193-225 101-133 (232)
191 KOG0977 Nuclear envelope prote 35.5 83 0.0018 32.6 5.8 23 204-226 56-78 (546)
192 PF10211 Ax_dynein_light: Axon 35.5 1.8E+02 0.0039 25.6 7.3 33 193-225 123-155 (189)
193 PF07412 Geminin: Geminin; In 35.4 1.3E+02 0.0028 27.5 6.4 24 202-225 130-153 (200)
194 PF14127 DUF4294: Domain of un 35.2 75 0.0016 27.9 4.7 58 191-254 62-119 (157)
195 KOG2751 Beclin-like protein [S 35.1 1.7E+02 0.0036 29.8 7.7 48 179-226 146-205 (447)
196 PF08781 DP: Transcription fac 35.1 2E+02 0.0043 24.9 7.2 17 193-209 18-34 (142)
197 TIGR03321 alt_F1F0_F0_B altern 35.1 3.4E+02 0.0074 24.4 10.5 45 172-216 32-76 (246)
198 KOG1962 B-cell receptor-associ 34.7 1.5E+02 0.0032 27.4 6.7 26 201-226 169-194 (216)
199 PF12718 Tropomyosin_1: Tropom 34.1 1.3E+02 0.0029 25.4 6.0 28 197-224 35-62 (143)
200 cd07647 F-BAR_PSTPIP The F-BAR 33.9 3.4E+02 0.0075 24.2 10.7 66 171-236 152-217 (239)
201 cd07666 BAR_SNX7 The Bin/Amphi 33.9 2.6E+02 0.0057 25.9 8.3 23 180-202 153-175 (243)
202 PRK06835 DNA replication prote 33.6 4E+02 0.0087 25.4 9.8 34 198-232 37-85 (329)
203 COG1792 MreC Cell shape-determ 33.5 68 0.0015 30.0 4.5 23 198-220 84-106 (284)
204 COG4026 Uncharacterized protei 33.5 2.3E+02 0.005 27.0 7.8 27 200-226 138-164 (290)
205 COG1792 MreC Cell shape-determ 33.4 1.3E+02 0.0028 28.2 6.3 44 195-238 64-109 (284)
206 PRK06568 F0F1 ATP synthase sub 33.1 3.2E+02 0.007 23.6 10.1 60 170-229 29-88 (154)
207 PF06785 UPF0242: Uncharacteri 33.0 3.3E+02 0.0071 27.3 9.1 34 193-226 123-156 (401)
208 PF14197 Cep57_CLD_2: Centroso 32.9 1.6E+02 0.0035 22.3 5.6 23 204-226 40-62 (69)
209 PF14775 NYD-SP28_assoc: Sperm 32.9 75 0.0016 23.4 3.8 18 209-226 38-55 (60)
210 cd00632 Prefoldin_beta Prefold 32.8 1.4E+02 0.0031 23.4 5.6 25 200-224 73-97 (105)
211 PF15397 DUF4618: Domain of un 32.8 3E+02 0.0064 26.0 8.5 23 198-220 201-223 (258)
212 PRK14872 rod shape-determining 32.8 91 0.002 30.4 5.3 29 197-225 57-85 (337)
213 PF01763 Herpes_UL6: Herpesvir 32.6 5.5E+02 0.012 26.9 11.1 50 172-226 350-399 (557)
214 PRK13455 F0F1 ATP synthase sub 32.6 3.2E+02 0.0069 23.4 10.5 49 171-219 53-101 (184)
215 PF11932 DUF3450: Protein of u 32.6 3.7E+02 0.008 24.1 10.5 18 203-220 62-79 (251)
216 PF02388 FemAB: FemAB family; 32.5 1E+02 0.0022 29.9 5.6 23 197-219 242-264 (406)
217 TIGR00993 3a0901s04IAP86 chlor 32.4 1E+02 0.0022 33.3 6.0 44 181-226 415-458 (763)
218 COG1422 Predicted membrane pro 32.2 1.9E+02 0.004 26.6 6.9 24 203-226 97-120 (201)
219 PF14775 NYD-SP28_assoc: Sperm 32.2 1.6E+02 0.0034 21.7 5.4 23 200-222 36-58 (60)
220 PF07334 IFP_35_N: Interferon- 31.8 1E+02 0.0022 24.3 4.5 17 207-223 3-19 (76)
221 KOG3436 60S ribosomal protein 31.7 1.2E+02 0.0025 25.9 5.1 20 200-219 15-34 (123)
222 PRK11020 hypothetical protein; 31.6 1.5E+02 0.0032 25.2 5.7 47 184-231 19-65 (118)
223 PHA02109 hypothetical protein 31.6 1.4E+02 0.0031 27.3 6.0 40 194-233 190-229 (233)
224 PF07989 Microtub_assoc: Micro 31.6 1.1E+02 0.0023 23.6 4.5 26 201-226 4-29 (75)
225 KOG2264 Exostosin EXT1L [Signa 31.5 1.7E+02 0.0037 31.3 7.3 27 198-224 94-120 (907)
226 PRK00736 hypothetical protein; 31.5 2.2E+02 0.0048 21.3 6.6 22 197-218 5-26 (68)
227 PF05700 BCAS2: Breast carcino 31.5 1.6E+02 0.0034 26.4 6.3 33 197-229 136-168 (221)
228 PF10669 Phage_Gp23: Protein g 31.4 3.1E+02 0.0067 23.0 7.5 46 177-226 56-101 (121)
229 PF07106 TBPIP: Tat binding pr 31.4 2.2E+02 0.0048 24.0 6.9 29 197-225 109-137 (169)
230 PF00038 Filament: Intermediat 31.3 4E+02 0.0087 24.2 10.0 33 194-226 220-252 (312)
231 PF13815 Dzip-like_N: Iguana/D 31.2 2.6E+02 0.0057 22.5 7.1 27 199-225 82-108 (118)
232 PF04880 NUDE_C: NUDE protein, 31.1 60 0.0013 28.6 3.5 20 207-226 27-46 (166)
233 PF12808 Mto2_bdg: Micro-tubul 31.0 1.1E+02 0.0024 22.3 4.3 39 179-217 11-49 (52)
234 PF11853 DUF3373: Protein of u 30.8 41 0.00089 34.3 2.8 23 204-226 31-53 (489)
235 PF06810 Phage_GP20: Phage min 30.8 2.9E+02 0.0063 23.7 7.6 26 199-224 36-64 (155)
236 COG5509 Uncharacterized small 30.5 87 0.0019 24.0 3.8 23 199-221 27-49 (65)
237 COG1579 Zn-ribbon protein, pos 30.1 3.8E+02 0.0082 25.0 8.7 34 193-226 48-81 (239)
238 PF05010 TACC: Transforming ac 30.0 3.9E+02 0.0084 24.3 8.6 48 179-226 156-204 (207)
239 PRK13923 putative spore coat p 30.0 2E+02 0.0044 25.6 6.6 34 196-229 110-143 (170)
240 PF15556 Zwint: ZW10 interacto 29.9 1.7E+02 0.0038 27.3 6.4 26 179-204 116-141 (252)
241 PF02344 Myc-LZ: Myc leucine z 29.9 1.7E+02 0.0037 19.7 4.6 23 202-224 6-28 (32)
242 KOG1103 Predicted coiled-coil 29.9 2.6E+02 0.0056 28.3 7.9 61 174-237 112-172 (561)
243 PRK02793 phi X174 lysis protei 29.8 2.5E+02 0.0053 21.2 6.5 22 197-218 8-29 (72)
244 KOG2483 Upstream transcription 29.6 1.3E+02 0.0028 27.9 5.6 37 188-224 103-139 (232)
245 PRK10722 hypothetical protein; 29.5 1.7E+02 0.0037 27.6 6.3 49 176-226 144-198 (247)
246 PF07795 DUF1635: Protein of u 29.5 2.3E+02 0.005 26.1 7.1 45 180-224 16-60 (214)
247 TIGR02338 gimC_beta prefoldin, 29.4 1.9E+02 0.0041 23.0 5.9 25 201-225 78-102 (110)
248 PF08826 DMPK_coil: DMPK coile 29.2 2.5E+02 0.0053 21.0 8.1 29 197-225 25-53 (61)
249 PRK06569 F0F1 ATP synthase sub 29.1 3.9E+02 0.0084 23.3 10.2 43 170-212 35-77 (155)
250 PRK14475 F0F1 ATP synthase sub 29.0 3.6E+02 0.0077 22.8 10.2 51 170-220 35-85 (167)
251 KOG3910 Helix loop helix trans 28.8 1.5E+02 0.0033 31.0 6.3 35 209-248 561-596 (632)
252 PF01920 Prefoldin_2: Prefoldi 28.7 1.9E+02 0.0042 21.7 5.6 26 200-225 72-97 (106)
253 cd07671 F-BAR_PSTPIP1 The F-BA 28.7 4.5E+02 0.0098 24.0 10.4 65 171-235 152-216 (242)
254 PF13094 CENP-Q: CENP-Q, a CEN 28.6 3E+02 0.0065 23.0 7.2 29 191-219 56-84 (160)
255 PF10224 DUF2205: Predicted co 28.4 1.5E+02 0.0032 23.3 4.9 49 177-225 17-65 (80)
256 cd07651 F-BAR_PombeCdc15_like 28.3 4.2E+02 0.0091 23.4 10.2 63 173-235 151-213 (236)
257 PF05308 Mito_fiss_reg: Mitoch 28.3 65 0.0014 30.0 3.4 27 203-229 121-147 (253)
258 KOG4739 Uncharacterized protei 28.2 5E+02 0.011 24.3 9.4 33 172-204 91-123 (233)
259 KOG0946 ER-Golgi vesicle-tethe 28.1 4.8E+02 0.01 29.0 10.0 57 176-233 650-706 (970)
260 PRK10963 hypothetical protein; 28.1 1.6E+02 0.0035 26.2 5.8 25 200-224 54-81 (223)
261 cd07655 F-BAR_PACSIN The F-BAR 28.0 4.6E+02 0.01 23.8 10.2 65 172-236 168-232 (258)
262 PF14931 IFT20: Intraflagellar 28.0 3.6E+02 0.0077 22.5 9.3 42 182-226 67-109 (120)
263 PF10883 DUF2681: Protein of u 27.9 2.9E+02 0.0063 22.1 6.6 31 199-229 32-62 (87)
264 TIGR02209 ftsL_broad cell divi 27.9 2.2E+02 0.0047 21.0 5.6 25 201-225 28-52 (85)
265 PF06295 DUF1043: Protein of u 27.5 2.7E+02 0.0058 23.0 6.6 13 205-217 33-45 (128)
266 PF12325 TMF_TATA_bd: TATA ele 27.1 3.7E+02 0.008 22.4 10.1 42 175-216 22-63 (120)
267 COG1938 Archaeal enzymes of AT 27.1 1E+02 0.0022 28.9 4.5 26 200-225 200-225 (244)
268 cd04779 HTH_MerR-like_sg4 Heli 27.0 3.7E+02 0.0081 22.4 7.5 37 199-235 83-119 (134)
269 PRK00295 hypothetical protein; 26.5 2.8E+02 0.006 20.7 6.5 21 198-218 6-26 (68)
270 PF08946 Osmo_CC: Osmosensory 26.5 1.5E+02 0.0031 21.5 4.1 28 196-223 11-38 (46)
271 PRK00247 putative inner membra 26.5 2E+02 0.0043 29.0 6.6 13 175-187 289-301 (429)
272 PF08614 ATG16: Autophagy prot 26.4 4.3E+02 0.0093 22.9 10.6 49 176-224 116-164 (194)
273 PF14662 CCDC155: Coiled-coil 26.4 3.6E+02 0.0079 24.6 7.7 26 200-225 98-123 (193)
274 KOG2412 Nuclear-export-signal 26.3 4.7E+02 0.01 27.6 9.3 16 181-196 219-234 (591)
275 PTZ00454 26S protease regulato 26.2 2.7E+02 0.0059 27.2 7.4 29 198-226 30-58 (398)
276 PF05278 PEARLI-4: Arabidopsis 26.2 5.8E+02 0.013 24.4 10.4 29 197-225 207-235 (269)
277 smart00030 CLb CLUSTERIN Beta 26.2 3.6E+02 0.0079 24.9 7.7 79 170-249 20-98 (206)
278 TIGR01144 ATP_synt_b ATP synth 26.0 3.6E+02 0.0078 21.9 10.1 46 172-217 22-67 (147)
279 PF04599 Pox_G5: Poxvirus G5 p 25.9 2.7E+02 0.0059 28.2 7.4 51 169-223 75-125 (425)
280 PRK00846 hypothetical protein; 25.9 3.2E+02 0.007 21.3 6.4 14 197-210 13-26 (77)
281 PTZ00454 26S protease regulato 25.9 2.1E+02 0.0046 27.9 6.6 23 202-224 27-49 (398)
282 cd04776 HTH_GnyR Helix-Turn-He 25.8 3.5E+02 0.0077 21.7 7.2 27 199-225 82-108 (118)
283 COG3074 Uncharacterized protei 25.8 2.6E+02 0.0057 22.1 5.8 19 207-225 49-67 (79)
284 PRK02119 hypothetical protein; 25.8 3E+02 0.0065 20.9 6.5 21 197-217 9-29 (73)
285 cd07596 BAR_SNX The Bin/Amphip 25.7 3.9E+02 0.0085 22.2 10.2 47 180-226 114-174 (218)
286 PRK13902 alaS alanyl-tRNA synt 25.6 3.3E+02 0.0072 29.8 8.5 35 200-234 757-791 (900)
287 KOG0977 Nuclear envelope prote 25.6 1.8E+02 0.0039 30.3 6.3 27 199-225 164-190 (546)
288 PF11365 DUF3166: Protein of u 25.5 1.8E+02 0.0039 23.7 5.1 22 203-224 21-42 (96)
289 TIGR01061 parC_Gpos DNA topois 25.5 2.1E+02 0.0045 30.5 6.9 21 205-225 428-448 (738)
290 PF11471 Sugarporin_N: Maltopo 25.4 1.4E+02 0.0031 22.1 4.1 21 202-222 30-50 (60)
291 COG4372 Uncharacterized protei 25.3 5.5E+02 0.012 26.3 9.3 45 182-226 129-173 (499)
292 PRK07353 F0F1 ATP synthase sub 25.3 3.6E+02 0.0079 21.7 10.5 48 172-219 32-79 (140)
293 COG4839 FtsL Protein required 25.2 1.1E+02 0.0024 26.0 4.0 36 197-234 67-102 (120)
294 PRK09173 F0F1 ATP synthase sub 25.1 4E+02 0.0087 22.1 10.5 47 171-217 28-74 (159)
295 PRK10093 primosomal replicatio 25.1 4.2E+02 0.009 23.7 7.7 50 172-221 112-167 (171)
296 PF13815 Dzip-like_N: Iguana/D 25.0 1.5E+02 0.0032 24.0 4.6 25 202-226 78-102 (118)
297 PF04880 NUDE_C: NUDE protein, 24.9 1.7E+02 0.0036 25.9 5.2 21 200-220 27-47 (166)
298 PF05615 THOC7: Tho complex su 24.8 3.7E+02 0.0081 21.9 7.0 38 192-229 76-113 (139)
299 COG2900 SlyX Uncharacterized p 24.8 3.1E+02 0.0067 21.5 6.0 12 197-208 8-19 (72)
300 PF13935 Ead_Ea22: Ead/Ea22-li 24.6 3.4E+02 0.0074 22.6 6.8 34 193-226 77-112 (139)
301 PF12999 PRKCSH-like: Glucosid 24.6 2.2E+02 0.0047 25.5 5.8 11 214-224 156-166 (176)
302 PF04568 IATP: Mitochondrial A 24.5 1.9E+02 0.0042 23.5 5.1 49 167-220 51-99 (100)
303 PF09457 RBD-FIP: FIP domain ; 24.5 1.9E+02 0.0041 20.7 4.5 27 200-226 3-29 (48)
304 PF07106 TBPIP: Tat binding pr 24.3 1.8E+02 0.0039 24.5 5.2 18 208-225 113-130 (169)
305 PF00430 ATP-synt_B: ATP synth 24.2 3.5E+02 0.0076 21.1 7.0 8 228-235 108-115 (132)
306 PRK09039 hypothetical protein; 24.1 6E+02 0.013 24.4 9.2 23 201-223 155-177 (343)
307 PF13747 DUF4164: Domain of un 24.0 3.6E+02 0.0078 21.2 8.5 51 175-225 10-60 (89)
308 PHA01750 hypothetical protein 23.9 2.1E+02 0.0045 22.4 4.9 19 205-223 43-61 (75)
309 KOG3654 Uncharacterized CH dom 23.9 8.9E+02 0.019 25.7 10.8 36 171-206 387-422 (708)
310 PF09602 PhaP_Bmeg: Polyhydrox 23.9 5.2E+02 0.011 23.0 9.3 31 197-227 78-108 (165)
311 PRK04863 mukB cell division pr 23.7 4.3E+02 0.0093 30.7 9.2 58 169-226 985-1042(1486)
312 PF15086 UPF0542: Uncharacteri 23.7 89 0.0019 24.6 2.9 23 173-195 50-72 (74)
313 KOG2398 Predicted proline-seri 23.7 4.1E+02 0.009 27.9 8.5 54 175-228 135-188 (611)
314 PRK04406 hypothetical protein; 23.6 3.4E+02 0.0074 20.8 6.2 19 198-216 12-30 (75)
315 KOG0250 DNA repair protein RAD 23.5 5.3E+02 0.012 29.2 9.6 11 193-203 713-723 (1074)
316 KOG0495 HAT repeat protein [RN 23.5 6.2E+02 0.013 27.9 9.7 29 198-226 125-153 (913)
317 KOG4739 Uncharacterized protei 23.3 4.4E+02 0.0096 24.6 7.8 7 229-235 142-148 (233)
318 PF12737 Mating_C: C-terminal 23.2 76 0.0017 31.7 3.1 23 191-213 396-418 (419)
319 PF15294 Leu_zip: Leucine zipp 23.1 2E+02 0.0043 27.5 5.6 33 193-225 142-174 (278)
320 PF04728 LPP: Lipoprotein leuc 23.1 2.3E+02 0.0049 21.1 4.8 26 199-224 5-30 (56)
321 PF04102 SlyX: SlyX; InterPro 23.0 3.2E+02 0.0069 20.2 6.8 24 197-220 4-27 (69)
322 PF09766 FimP: Fms-interacting 23.0 4E+02 0.0086 25.7 7.8 36 191-226 102-137 (355)
323 PF14817 HAUS5: HAUS augmin-li 22.9 4.3E+02 0.0093 28.0 8.5 24 201-224 83-106 (632)
324 KOG2189 Vacuolar H+-ATPase V0 22.9 4E+02 0.0086 29.2 8.3 27 198-224 93-119 (829)
325 PF12128 DUF3584: Protein of u 22.8 5.9E+02 0.013 28.4 9.9 23 64-90 532-555 (1201)
326 PRK14872 rod shape-determining 22.8 1.2E+02 0.0027 29.5 4.3 23 204-226 57-79 (337)
327 KOG0995 Centromere-associated 22.7 3.1E+02 0.0067 28.9 7.3 45 193-237 297-350 (581)
328 PRK09343 prefoldin subunit bet 22.5 3E+02 0.0065 22.5 6.0 24 202-225 83-106 (121)
329 PF01956 DUF106: Integral memb 22.4 2.3E+02 0.0051 23.7 5.5 40 175-216 46-85 (168)
330 TIGR01554 major_cap_HK97 phage 22.4 5.5E+02 0.012 24.2 8.5 28 198-225 35-62 (378)
331 PRK04325 hypothetical protein; 22.4 3.1E+02 0.0067 20.8 5.6 12 212-223 38-49 (74)
332 COG2919 Septum formation initi 22.3 3.4E+02 0.0073 22.1 6.2 24 202-225 55-78 (117)
333 PF06673 L_lactis_ph-MCP: Lact 22.1 97 0.0021 29.2 3.3 23 199-221 20-42 (347)
334 PRK03992 proteasome-activating 21.9 2.9E+02 0.0063 26.5 6.6 41 196-237 7-47 (389)
335 COG0172 SerS Seryl-tRNA synthe 21.8 3.3E+02 0.0072 27.5 7.1 29 198-226 69-97 (429)
336 PF07989 Microtub_assoc: Micro 21.7 3.3E+02 0.0071 20.9 5.7 30 197-226 36-65 (75)
337 PF02370 M: M protein repeat; 21.7 2.1E+02 0.0045 17.6 3.6 17 200-216 4-20 (21)
338 PF12777 MT: Microtubule-bindi 21.6 4.1E+02 0.0089 25.2 7.5 49 178-226 223-271 (344)
339 PF14645 Chibby: Chibby family 21.6 2.4E+02 0.0051 23.3 5.2 25 200-224 81-105 (116)
340 PF02994 Transposase_22: L1 tr 21.6 2E+02 0.0044 27.8 5.5 28 197-224 144-171 (370)
341 PRK04406 hypothetical protein; 21.6 3.8E+02 0.0082 20.5 6.5 11 211-221 39-49 (75)
342 PF09798 LCD1: DNA damage chec 21.5 4.8E+02 0.01 27.8 8.5 45 182-226 18-62 (654)
343 cd07681 F-BAR_PACSIN3 The F-BA 21.3 6.8E+02 0.015 23.4 10.6 65 171-235 167-231 (258)
344 PF03962 Mnd1: Mnd1 family; I 21.3 2.7E+02 0.0059 24.5 5.9 22 203-224 109-130 (188)
345 PF11559 ADIP: Afadin- and alp 21.2 4.7E+02 0.01 21.5 10.3 50 175-224 58-107 (151)
346 PF07334 IFP_35_N: Interferon- 21.1 2.1E+02 0.0045 22.5 4.5 27 199-225 2-28 (76)
347 cd00890 Prefoldin Prefoldin is 21.0 3.1E+02 0.0067 21.4 5.6 26 200-225 97-122 (129)
348 PRK14155 heat shock protein Gr 20.9 3.7E+02 0.0081 24.4 6.7 19 201-219 31-49 (208)
349 PF12329 TMF_DNA_bd: TATA elem 20.9 3E+02 0.0066 20.8 5.3 29 197-225 40-68 (74)
350 PRK04863 mukB cell division pr 20.9 5.5E+02 0.012 29.9 9.4 69 180-250 1063-1139(1486)
351 KOG3650 Predicted coiled-coil 20.8 5.1E+02 0.011 21.8 7.1 42 176-224 56-97 (120)
352 PF06632 XRCC4: DNA double-str 20.8 3.6E+02 0.0079 26.2 7.0 28 198-225 145-172 (342)
353 PRK10803 tol-pal system protei 20.7 2.4E+02 0.0053 25.9 5.6 39 198-237 55-93 (263)
354 PF08286 Spc24: Spc24 subunit 20.7 33 0.00071 27.7 0.0 30 198-227 14-43 (118)
355 PF09766 FimP: Fms-interacting 20.7 3.2E+02 0.0068 26.4 6.6 37 182-218 114-150 (355)
356 PF10805 DUF2730: Protein of u 20.5 4.2E+02 0.009 21.2 6.3 12 198-209 50-61 (106)
357 PF15030 DUF4527: Protein of u 20.5 7.7E+02 0.017 23.7 9.3 24 173-196 12-35 (277)
358 PF11471 Sugarporin_N: Maltopo 20.5 2.5E+02 0.0055 20.7 4.6 23 199-221 34-56 (60)
359 PF13942 Lipoprotein_20: YfhG 20.4 3.9E+02 0.0084 24.2 6.6 40 185-226 113-152 (179)
360 PF13600 DUF4140: N-terminal d 20.4 2.9E+02 0.0063 21.2 5.3 16 66-81 4-19 (104)
361 COG3599 DivIVA Cell division i 20.4 2.4E+02 0.0052 25.7 5.4 25 200-224 33-57 (212)
362 PF05600 DUF773: Protein of un 20.3 6.3E+02 0.014 25.8 8.9 21 204-224 460-480 (507)
363 PF15619 Lebercilin: Ciliary p 20.2 3.6E+02 0.0078 24.0 6.4 30 200-229 15-44 (194)
364 cd07680 F-BAR_PACSIN1 The F-BA 20.0 7.2E+02 0.016 23.2 10.2 64 172-235 168-231 (258)
No 1
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.43 E-value=1.1e-12 Score=122.25 Aligned_cols=59 Identities=32% Similarity=0.513 Sum_probs=54.8
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
...|+...||+-|+.||||+|++||+|||||+.|||.+|..||..|..|.++++.|++.
T Consensus 283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 44567779999999999999999999999999999999999999999999999999875
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.36 E-value=5.5e-12 Score=91.88 Aligned_cols=54 Identities=44% Similarity=0.578 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|...
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999864
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.29 E-value=2.5e-11 Score=88.33 Aligned_cols=54 Identities=44% Similarity=0.668 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..++.+|+++||+||++||.||++|+++||.+|..|+.+|..|+.++..|...
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999875
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.25 E-value=1.6e-11 Score=121.66 Aligned_cols=73 Identities=37% Similarity=0.481 Sum_probs=60.1
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQG 240 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~~ 240 (254)
-..|.+.-||+.|||||||||..||+|||||+..||.++.+|.+||+.|+++...|+.....-+-|+-+.+++
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 4457888999999999999999999999999999999999999999999999999886533333344444443
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.19 E-value=1.1e-10 Score=82.83 Aligned_cols=52 Identities=48% Similarity=0.656 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.++++.+|. +||+||++||.|||+|+.+||.++..|+.+|..|..+++.|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777887 9999999999999999999999999999999999999998874
No 6
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.12 E-value=3.9e-10 Score=103.24 Aligned_cols=66 Identities=38% Similarity=0.479 Sum_probs=59.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 160 SLRGRRFNGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 160 ~~rgRk~~~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..|+|++.+++ ..+||-+||++|||.+|+-+|.|||++++++|-++.+|++||+.|..+.+.|.+.
T Consensus 54 ~~rKr~RL~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 54 PKRKRRRLDHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred hHHHHHhhccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788887776 7899999999999999999999999999999999999999999998888888764
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.09 E-value=1e-10 Score=114.07 Aligned_cols=67 Identities=34% Similarity=0.519 Sum_probs=57.7
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
+.-|+...||.||+|||++||+.||+|||+|+++||.+|....+||.+|++++++|+. +..-|++.|
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-~N~sLl~qL 309 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-SNRSLLAQL 309 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-ccHHHHHHH
Confidence 3446777889999999999999999999999999999999999999999999999985 344444444
No 8
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.26 E-value=8.9e-06 Score=76.19 Aligned_cols=51 Identities=29% Similarity=0.433 Sum_probs=45.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..|..+.|..+|.|.|+||++..+.|+.+++.|+.+|++||.++.+|+.+
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446777788999999999999999999999999999999999999865
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.12 E-value=1.6e-07 Score=73.16 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=47.7
Q ss_pred cchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 169 NVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 169 ~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..+...-|..||..|||.+|+.||.||.+++.+||.++..|+.+...|..++..+..
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~ 79 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQ 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556689999999999999999999999999999998888777777776666653
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.88 E-value=6.5e-05 Score=69.83 Aligned_cols=62 Identities=27% Similarity=0.382 Sum_probs=49.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
|-.|...+|||+|.+||+||-+++..||.+|..|+.+|..|...+..|.+ +-++++..+-.|
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~-~v~e~k~~V~~h 267 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE-QVAELKQKVMEH 267 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33444799999999999999999999999999999999999988887774 344444444333
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.80 E-value=0.00024 Score=65.27 Aligned_cols=69 Identities=25% Similarity=0.362 Sum_probs=55.9
Q ss_pred CCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 164 RRFNGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 164 Rk~~~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E 233 (254)
++.....+.++++-..|..||=++|++||.+.|...++...++..|+.||+.|+.++++|... -..+..
T Consensus 182 ~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e-l~~~~~ 250 (269)
T KOG3119|consen 182 SKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE-LATLRR 250 (269)
T ss_pred ccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333455566667767777899999999999999999999999999999999999999999864 333433
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.80 E-value=0.0082 Score=51.08 Aligned_cols=56 Identities=41% Similarity=0.504 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVA-------KLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~-------~Le~EN~eLk~ql~eL~e~ 226 (254)
|..-.|..||-+|||=-|+-||.|+-..-++||.+-. +|.+||.++..++..++.+
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677788999999999999999999999987554 4555555555555555443
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.47 E-value=0.0041 Score=63.44 Aligned_cols=49 Identities=39% Similarity=0.508 Sum_probs=43.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 178 QRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 178 qRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.||.=|||.+|++||+||-.-+..||.+|+.|.+|-+.|.++-.++...
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~ 540 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST 540 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999998887766543
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.11 E-value=0.00061 Score=65.52 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=63.1
Q ss_pred CcchhHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 168 GNVEKVVERRQRRMIKNRESAAR---SRARKQAYTMELEAEVAKLK-EENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~R---SR~RKKayleeLE~eV~~Le-~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
....+.++|+..|+++|+.+|.+ ||.|++.++.+|+.+|+.|+ .++..|..++..|.+. ++.+.++++.|
T Consensus 146 ~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne-~~~l~~~l~~h 219 (395)
T KOG1414|consen 146 VLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNE-ADHLEKELNTH 219 (395)
T ss_pred CCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccH-HHHHHHHHhcc
Confidence 34467888999999999999999 99999999999999999999 9999999999999875 77788888877
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=95.23 E-value=0.0035 Score=60.35 Aligned_cols=62 Identities=29% Similarity=0.408 Sum_probs=51.4
Q ss_pred CCCCcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 025340 165 RFNGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELR-KKQDEMMEM 226 (254)
Q Consensus 165 k~~~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk-~ql~eL~e~ 226 (254)
.+....++.++++.+-+++||.+|-+||.|||.....|+.+...+..+|..|. .+++.|...
T Consensus 274 ~s~~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~ 336 (395)
T KOG1414|consen 274 RSRTVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNE 336 (395)
T ss_pred cccccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhH
Confidence 33345566777776669999999999999999999999999999999999999 555555554
No 16
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=89.18 E-value=19 Score=33.44 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=41.8
Q ss_pred hhHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRR---MIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 171 e~~eeRRqRR---miKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++--+||.|- +.|=|..|+.--..-+..+.+||++.+.|+.++++|++++..|...
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554 4455555555556667788999999999999999999999999865
No 17
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=88.35 E-value=9.2 Score=38.09 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++.+...|++.+-+.|+..|.+|..++++|+++
T Consensus 287 q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~ 319 (411)
T KOG1318|consen 287 QTLQRARELENRQKKLESTNQELALRIEELKSE 319 (411)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 334445666777777888888888888888875
No 18
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.60 E-value=1.8 Score=34.95 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 192 RARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 192 R~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
-.+.++.+++++.++++|+.+|+.|+.+++.|... ...+|.+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~--~dyiEe~ 70 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG--QEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HHHHHHH
Confidence 35667778999999999999999999999998752 2345444
No 19
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.56 E-value=2.6 Score=38.84 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
+..|||+++..+..+...|+.+++.|+.- .-+|.|++.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D-N~kLYEKiR 131 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRAD-NVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34777777777777777777777777653 445556553
No 20
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.29 E-value=2.9 Score=30.36 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
...+..+.+|+.+++.|+.+|++|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678899999999999999999999999
No 21
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=84.70 E-value=4.5 Score=32.41 Aligned_cols=38 Identities=42% Similarity=0.504 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
...+.+|+.++..|..||+.|+.+++.-.++ +++++..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E-k~~Ll~l 85 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREE-KQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3445566666666666666666666554433 5555544
No 22
>PHA03155 hypothetical protein; Provisional
Probab=83.16 E-value=2.1 Score=35.93 Aligned_cols=26 Identities=50% Similarity=0.502 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.-+++|++++..|+-||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999999955
No 23
>PHA03162 hypothetical protein; Provisional
Probab=82.88 E-value=1 Score=38.58 Aligned_cols=28 Identities=43% Similarity=0.539 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+++.-+++|++++.+|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999993
No 24
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=82.83 E-value=2.2 Score=35.86 Aligned_cols=29 Identities=41% Similarity=0.471 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
|..-+++|++++.+|+-||..|++++..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34568999999999999999999998643
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.51 E-value=7 Score=29.89 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+++|+.+...|.++|..|+.+...|.+.
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555543
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.44 E-value=17 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..++.+..++..+.+|+++|++|+++++.+..+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555666666666666555543
No 27
>PF15058 Speriolin_N: Speriolin N terminus
Probab=81.83 E-value=2.4 Score=38.44 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQVL 232 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~ 232 (254)
.+.|.++++.|-.||++||+++.-|+|.+.-..+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999987654433
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.16 E-value=7.7 Score=29.45 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
.++.|=..++.|+.||..|+.++..+... ..+++|..
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~E-R~~L~ekn 44 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREE-RAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34555556677888888888888877765 44444443
No 29
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.92 E-value=2.8 Score=31.50 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELR 217 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk 217 (254)
+.+|+.++.+|+.||.-|+
T Consensus 23 I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 23 IAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 30
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=79.68 E-value=36 Score=32.70 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 147 TSSVSPVPYMFNGSLRGRRFNGNVEKVVERRQRRMIKNRESAARSRARKQA---YTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 147 ~ss~Sp~p~~~~g~~rgRk~~~~~e~~eeRRqRRmiKNRESA~RSR~RKKa---yleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
..+++|.|....++.+..+. ..+..-.||+.+++.-----++-|+.+.+ .++.||++.++|+..-.+|.+++..|
T Consensus 204 ~~~s~p~ps~ie~s~~~~~~--~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 204 LVSSDPQPSQIEKSAHPYKT--PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred CCCCCCCcccccccCCCCCC--chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544333333 33455677888877332333444444444 45667789999999999999999988
Q ss_pred HHH
Q 025340 224 MEM 226 (254)
Q Consensus 224 ~e~ 226 (254)
+..
T Consensus 282 Kql 284 (294)
T KOG4571|consen 282 KQL 284 (294)
T ss_pred HHH
Confidence 753
No 31
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.63 E-value=5.8 Score=27.85 Aligned_cols=26 Identities=46% Similarity=0.580 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.|..+.+.|..||+.|+.++..|..
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666654
No 32
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.52 E-value=2.3 Score=29.89 Aligned_cols=43 Identities=40% Similarity=0.368 Sum_probs=13.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 178 QRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 178 qRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.++...|++=|+..-.. ...+.+||.++.+|..||..|+.++.
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 45566677766655433 34578999999999999999988653
No 33
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=79.29 E-value=25 Score=33.31 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=44.2
Q ss_pred CCCCcchhHHHHHHHHHHHhhHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 165 RFNGNVEKVVERRQRRMIKNRESA--ARSRARKQAY-TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 165 k~~~~~e~~eeRRqRRmiKNRESA--~RSR~RKKay-leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
...+-.|+...|+++-.+.---+- ++.|.-+-+| +.+|+.+.+.|..||+.|+++.+.|..+
T Consensus 62 ~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 62 DHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888888887765433332 3334445554 5789999999999999999998888765
No 34
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=78.76 E-value=4.2 Score=32.15 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..|+.+++.|+.++..++.+|..|..++.++++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345778899999999999999999999988763
No 35
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.32 E-value=9.9 Score=39.46 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCCCCcchhHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 164 RRFNGNVEKVVERRQRRMIKNRESAARSR---ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 164 Rk~~~~~e~~eeRRqRRmiKNRESA~RSR---~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-..+..+-+...|..|-.+.--.|-++-+ .-=++++.+|+.|.+.|+.||..|++++++|..+
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 34455666777787777777777666655 3457889999999999999999999999999864
No 36
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.26 E-value=9.1 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.....+..++.++++++.||++|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55667788999999999999999999998875
No 37
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.92 E-value=23 Score=32.50 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
-=+..++.|+.+|..|+-.++++..+++++.++|+.-..+-.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888899999999999999999999988887655443
No 38
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.31 E-value=26 Score=25.22 Aligned_cols=56 Identities=30% Similarity=0.359 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARK---QAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RK---KayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+.+.|+.+-.+.-|.+-.+-...- ...+..|+.+...|..++..|..++..|...
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666777777766666443 4567889999999999999999999998753
No 39
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.79 E-value=67 Score=29.70 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=36.8
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAK-LKEENEELRKKQDEMM 224 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~-Le~EN~eLk~ql~eL~ 224 (254)
...|+...+|+++|.+=-|-=..|++.|++..+.--++++. ++..|+.|.+.+..-+
T Consensus 103 ~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk 160 (216)
T KOG4031|consen 103 DEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNK 160 (216)
T ss_pred cChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33466666677777766666667777777777766666654 5566666665554443
No 40
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=74.99 E-value=28 Score=29.43 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ 218 (254)
.-=|+.+.+||+++..|++||.-|+.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666666666666666654
No 41
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.99 E-value=13 Score=33.08 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=7.4
Q ss_pred cccccCCCCC
Q 025340 245 CLRRTQTGPW 254 (254)
Q Consensus 245 ~LRRT~t~pw 254 (254)
...-|.+.||
T Consensus 181 ~F~~~~aaPW 190 (190)
T PF05266_consen 181 EFQSVAAAPW 190 (190)
T ss_pred HHHHHhcCCC
Confidence 4567788888
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=74.62 E-value=21 Score=31.51 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
.+.+..+.+|..+++.|+.||..|.+++..+.+..
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888888888888888877777653
No 43
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=74.41 E-value=60 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHhhHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAAR 190 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~R 190 (254)
+++.+.||++-+.--+...+.
T Consensus 46 ~eEre~rR~kq~E~q~ai~~Q 66 (157)
T PF15236_consen 46 IEERERRRQKQLEHQRAIKQQ 66 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555666555555544443
No 44
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.28 E-value=44 Score=26.46 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=34.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 177 RQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 177 RqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
+..|-++.-+.+.+.+..|.+.+..|..++..|..+...|...+..+.. -..+++.+
T Consensus 61 k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~--Y~~fL~~v 117 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK--YEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 3444445555555556666666666777777777777777776666653 33445444
No 45
>PHA00728 hypothetical protein
Probab=73.15 E-value=3.4 Score=35.51 Aligned_cols=26 Identities=50% Similarity=0.694 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
.+|++|++||++|++++++|+....|
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 47889999999999999999876555
No 46
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.07 E-value=50 Score=28.32 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+|.+.-...|++.|-.--.-+|+.+.+|+.++..+..+...|..++..+.+.
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778899999999999999999999999999888888888888887765
No 47
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=72.88 E-value=15 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
..++..+..+++||++|+..++.+.+.-+.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777788887777777776443
No 48
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.06 E-value=17 Score=29.09 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
.=||-|-...|.++..|+.+|..|.++++.|.........|.
T Consensus 38 ~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 38 ALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888899999999999999999999999998755555443
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.96 E-value=55 Score=29.09 Aligned_cols=52 Identities=29% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-..+++.+++-++-+.+=..-++.+..++.++..|+-|++.|..++..+...
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777888888888888888888888777755
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.60 E-value=11 Score=30.79 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+|...+..|.+||.+|+.+.+.|.+
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 51
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.78 E-value=23 Score=27.11 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.-|+.+++.|+++|..|..+.++|.+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344445555555555555555555543
No 52
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=70.69 E-value=36 Score=29.72 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
...++..+++++.|..|+-.=++|-+...+|..++.+.++...++.+.+++|..
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788888888888777788888899999888888888888888887765
No 53
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.53 E-value=15 Score=37.25 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred CCCCcchhHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 165 RFNGNVEKVVERRQRRMIKNRESAARSRARKQA----------YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 165 k~~~~~e~~eeRRqRRmiKNRESA~RSR~RKKa----------yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|+....-+.+.|+.|.|+.--||-++....=+. .-.+|.++|++|+.+|..|..++..|...
T Consensus 244 KaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 244 KAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 343345588888889999999999988865442 23789999999999999999998887754
No 54
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=69.71 E-value=8.9 Score=31.64 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
.=|.++.+|.++...|+-||+.|++.+.++
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666666666666666666655
No 55
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.56 E-value=17 Score=32.65 Aligned_cols=46 Identities=28% Similarity=0.329 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 174 VERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 174 eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+-+|.+|.++++| ...+..+++|+.+++.|+.+.+++++.+.+|.+
T Consensus 89 Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 89 EYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLHS 134 (181)
T ss_pred hhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666653 445566788888888888888888888888863
No 56
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.37 E-value=9.3 Score=31.18 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..=|.++.+|..+...|+-||+.|+..+.++.+
T Consensus 25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 25 EELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667788888888888888888888887765
No 57
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.83 E-value=20 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.+||.++..++.....++++++++.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISES 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888764
No 58
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=68.62 E-value=34 Score=30.53 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 189 ARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 189 ~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.-=++|++++.+.+.+.+.++.+..+|+.+++..++
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334567788888888888888888888877766553
No 59
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=68.14 E-value=16 Score=32.99 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhh
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM--QKNQVLEMMNM 237 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~--qk~ql~E~~~~ 237 (254)
+--..-....+|.+|.++|++||.+|+.++.++.+. +.++|.+.++.
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445566778888888888888888887765433 23344444443
No 60
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.96 E-value=13 Score=26.44 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+-|..=.+.|.+||.+|++++++|..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678899999999999999985
No 61
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.48 E-value=30 Score=29.79 Aligned_cols=7 Identities=57% Similarity=0.871 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 025340 205 EVAKLKE 211 (254)
Q Consensus 205 eV~~Le~ 211 (254)
++++|++
T Consensus 162 ei~~lk~ 168 (192)
T PF05529_consen 162 EIEKLKK 168 (192)
T ss_pred HHHHHHH
Confidence 3333333
No 62
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.16 E-value=44 Score=28.76 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 025340 208 KLKEENEELRKKQD 221 (254)
Q Consensus 208 ~Le~EN~eLk~ql~ 221 (254)
.+++|.++|+++++
T Consensus 158 ~~~~ei~~lk~el~ 171 (192)
T PF05529_consen 158 KLSEEIEKLKKELE 171 (192)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444333
No 63
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=66.79 E-value=51 Score=34.39 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
-|-++.+|-..|..|+++++++.
T Consensus 245 kegriddllRancDlRRQIdEqq 267 (775)
T KOG1151|consen 245 KEGRIDDLLRANCDLRRQIDEQQ 267 (775)
T ss_pred hcchHHHHHHhhhHHHHHHHHHH
Confidence 33467777777777777776654
No 64
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=66.70 E-value=12 Score=31.18 Aligned_cols=19 Identities=32% Similarity=0.393 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eL 216 (254)
.+++||.++++|+.+.+++
T Consensus 113 ~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 113 RLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443
No 65
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=66.13 E-value=13 Score=36.70 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.|..|...|++||++|+.+++.|++
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 66
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.88 E-value=85 Score=28.72 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
-+..++|+.++.+.-+.|...+..=++...+.+.++..++.+-.++..+...--+..+.
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~ 89 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQ 89 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888887777666666677777666666666555444433333333
No 67
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.23 E-value=41 Score=27.63 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMM 224 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~ 224 (254)
..|+.+..+++.++++|.
T Consensus 101 ~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 68
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=65.06 E-value=18 Score=29.87 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
+.+.+|...+..|.+||..|+.+.+.|.++..
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888887633
No 69
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.94 E-value=61 Score=26.83 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=35.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 177 RQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 177 RqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
...|=...||.......++...++.|+..++.|+.+++.+.+++..+.+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777777777777777778888888888777777777766544
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.85 E-value=12 Score=38.00 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.4
Q ss_pred CCCCCCc
Q 025340 149 SVSPVPY 155 (254)
Q Consensus 149 s~Sp~p~ 155 (254)
.++|-+.
T Consensus 41 ~ltpee~ 47 (472)
T TIGR03752 41 ELSPEEL 47 (472)
T ss_pred cCCcchh
Confidence 3555554
No 71
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=63.97 E-value=14 Score=26.97 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
-.....++..|+.||..|+.+++.+.+
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888999999999998876653
No 72
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.81 E-value=23 Score=27.21 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++.++.+..+|+.||..|+-++..|.+-
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 38899999999999999999999888753
No 73
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=62.78 E-value=1.2e+02 Score=32.75 Aligned_cols=8 Identities=50% Similarity=0.779 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 025340 208 KLKEENEE 215 (254)
Q Consensus 208 ~Le~EN~e 215 (254)
.+++||.+
T Consensus 287 ~~keE~~k 294 (811)
T KOG4364|consen 287 AIKEENNK 294 (811)
T ss_pred HHHHHHHH
Confidence 34444443
No 74
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.16 E-value=47 Score=25.14 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQ 239 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~ 239 (254)
+.+..|+.+.+.++.+...|..+++.+.+. -+.+.+.+...+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~-l~~~~~~l~~~~ 103 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKK-LKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 455666666666777777777666666654 333444444443
No 75
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=61.97 E-value=64 Score=31.41 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARK 195 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RK 195 (254)
.++.|+++++|......=+||
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRK 141 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRK 141 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888776665555
No 76
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.76 E-value=44 Score=26.03 Aligned_cols=33 Identities=39% Similarity=0.555 Sum_probs=22.6
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 189 ARSRARKQ----AYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 189 ~RSR~RKK----ayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.+-|.||. ..++.|..++..|.++|..|+.+++
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444 3556777788888888888887765
No 77
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.41 E-value=91 Score=25.61 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQV 231 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql 231 (254)
+....++|..++.++-+.|...+..=.+.+.+.+.++...+.+-.++..+...--+..+++.
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~ 90 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888877777888887777777666666555444433333333
No 78
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=60.99 E-value=80 Score=24.82 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
-+..|-.+|+..++||+.|..+.+-|.+
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555553
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.83 E-value=47 Score=25.16 Aligned_cols=37 Identities=46% Similarity=0.605 Sum_probs=17.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
+++.+-|.+|.++=.-+ -.++.+|+.|++.|++++++
T Consensus 29 k~L~~ERd~~~~~l~~a-------~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 29 KRLRRERDSAERQLGDA-------YEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443333 33444455555555555443
No 80
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.26 E-value=56 Score=29.88 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 177 RQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 177 RqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..++..-=|.+...|....+..++|+.++..|+.+.+.|+-++..+.+.
T Consensus 96 k~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 96 KKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred hHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455556667788888888889999999999999888888888877754
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.89 E-value=60 Score=35.58 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=3.6
Q ss_pred CCCCcccC
Q 025340 151 SPVPYMFN 158 (254)
Q Consensus 151 Sp~p~~~~ 158 (254)
+|.|.-|.
T Consensus 308 lP~~~TFE 315 (1118)
T KOG1029|consen 308 LPAPVTFE 315 (1118)
T ss_pred CCCCcchh
Confidence 34444454
No 82
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.90 E-value=26 Score=28.20 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRK 218 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ 218 (254)
+.|+.+.+.|+.|...|+.
T Consensus 44 ~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3344444444444444443
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.66 E-value=1.3e+02 Score=26.49 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
+..+..|+.+++.++++++.+++++++
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333333
No 84
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=57.65 E-value=9.2 Score=27.65 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ 218 (254)
+.++.|||.||..|++.|..|-.
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 34567777777777777776653
No 85
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.59 E-value=2.1e+02 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 181 MIKNRESAARSR-ARKQAYT----MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 181 miKNRESA~RSR-~RKKayl----eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+-+|..|-.+- +|..+.+ .+|+.+.+.||.+-..|.+.++-|..+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455554444 4444443 456666666666666666666655544
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=46 Score=35.10 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
...+|+.++++|+.++..|+.+++.+.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 87
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.44 E-value=58 Score=31.55 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
||+++-++|+.+-+||+++.+++.
T Consensus 68 eL~~rqeEL~Rke~ELdRREr~~a 91 (313)
T KOG3088|consen 68 ELLKKQEELRRKEQELDRRERALA 91 (313)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 455555555555556666555544
No 88
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=57.01 E-value=36 Score=32.23 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQ 239 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~ 239 (254)
.+..||.++..++.|+.....++..+.. +.+.|.+..+|
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR---~~lKEa~~~~f 204 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKR---QKLKEAYSLKF 204 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhH---HHHHHHHHHHH
Confidence 4466666666666666666666665552 23444444443
No 89
>PF14645 Chibby: Chibby family
Probab=56.59 E-value=42 Score=27.76 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKNQ 230 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~q 230 (254)
..|..+...|++||.-|+-+++-|..+.-..
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567788888888888888888764433
No 90
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.56 E-value=66 Score=22.53 Aligned_cols=49 Identities=33% Similarity=0.431 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRAR---KQAYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~R---KKayleeLE~eV~~Le~EN~eLk~q 219 (254)
++..+||.+--+.=+.+-.+-+.+ -...+..|+.++..|..++..|+.+
T Consensus 3 ~~~~~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555544 3456778888888888888888764
No 91
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.43 E-value=1.3e+02 Score=25.67 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
+.+..++|+.++...-+.|...+..=.+.+++.+.++...+.+-.++..+-..-
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 96 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEY 96 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888888888887777777777777776666666555444333
No 92
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=56.28 E-value=1.3e+02 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+....++|+.++.+.-+.|.+.+..=.+...+.|.++...+.|-..+..+.
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777778877777766667777766666655555554443
No 93
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=56.22 E-value=75 Score=25.91 Aligned_cols=44 Identities=32% Similarity=0.339 Sum_probs=21.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 182 iKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..-||.|....-=++...+.|++--++|++|...-++++++|++
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666655333333344443334444444445555555554
No 94
>PRK14127 cell division protein GpsB; Provisional
Probab=55.98 E-value=26 Score=28.90 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.|..++..|+++|..|+.+++++..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666654
No 95
>PRK14127 cell division protein GpsB; Provisional
Probab=55.72 E-value=34 Score=28.28 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++++++...++.|..||.+|+.++..|+++
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777777766654
No 96
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=55.44 E-value=13 Score=29.43 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.|++.|...+..|..+|..|+.++.+|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~ 53 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQA 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666677777777777777666665553
No 97
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.38 E-value=36 Score=26.55 Aligned_cols=29 Identities=45% Similarity=0.498 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..++|-.++..|+.+...|..++.++.+.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777776666666666654
No 98
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=55.26 E-value=1.3e+02 Score=25.30 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+-+..++|+.++...-+.|...+..=.+...+.|.++...+.|-..+..+.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A 83 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEA 83 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888887777777777777776666655444433
No 99
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=54.72 E-value=28 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+...|++||.-|+-+++-|..+
T Consensus 80 k~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999998888888765
No 100
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=54.54 E-value=1.4e+02 Score=25.46 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.+..+.|+.++.+.-+.|...+..=++.+.+.+.++...+.+-.++..+...--+.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888888888777777777777777766666666655544443333
No 101
>PLN02320 seryl-tRNA synthetase
Probab=54.32 E-value=58 Score=33.28 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 183 KNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQV 231 (254)
Q Consensus 183 KNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql 231 (254)
+|..|.+-..+++++..++|.+++..|+++...|..++.+++++....+
T Consensus 116 rn~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 116 RNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333344567777778888888888888877776644433
No 102
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.30 E-value=94 Score=32.89 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+..+..+|+.|...|+.++...+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444
No 103
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=52.64 E-value=42 Score=31.22 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql 220 (254)
+|++|.++|++|+.+|++++
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~ 89 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQL 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544443333
No 104
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=52.47 E-value=1.1e+02 Score=26.15 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELE---AEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE---~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.-+..-.|-.|...+|-+.|.+..-+++| .+...+......||+.|..+.+
T Consensus 63 ~EAD~Iy~~ID~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~ 118 (133)
T PF06424_consen 63 EEADRIYESIDRRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSE 118 (133)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCH
Confidence 3333444455555544443333332222222 2233455666666666666554
No 105
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.23 E-value=33 Score=25.86 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.++.|..++.+|+..|.+|+.+..-|+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666655554
No 106
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.16 E-value=38 Score=34.51 Aligned_cols=10 Identities=0% Similarity=0.438 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 025340 201 ELEAEVAKLK 210 (254)
Q Consensus 201 eLE~eV~~Le 210 (254)
+||++++.|+
T Consensus 80 ELEKqLaaLr 89 (475)
T PRK13729 80 QMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 107
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.83 E-value=48 Score=23.85 Aligned_cols=26 Identities=42% Similarity=0.696 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..+..++..|++++++|+.+.+.|.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 108
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.55 E-value=1.1e+02 Score=25.02 Aligned_cols=45 Identities=29% Similarity=0.413 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 025340 178 QRRMIKNRESAARSRARKQAYTMELEA--EVAKLKEENEELRKKQDE 222 (254)
Q Consensus 178 qRRmiKNRESA~RSR~RKKayleeLE~--eV~~Le~EN~eLk~ql~e 222 (254)
.-=|-.||.+++..++-...|-..|.. +++.|.++.+.|..++.+
T Consensus 52 ~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~ 98 (108)
T PF06210_consen 52 LILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGE 98 (108)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 344667887777544444445444433 333444444444443333
No 109
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=51.01 E-value=1.4e+02 Score=24.78 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+.+..++|+.++.+.-+.|...+..=.+...+.+.++...+.|-.++..+.
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a 80 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEY 80 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888777777777777777776666655554443
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.01 E-value=1.5e+02 Score=28.06 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+..+.+.+||.+.+.|.+|...|+.+.++|.+.
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555555443
No 111
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.75 E-value=36 Score=35.84 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..++..++.|+.||.+|+.++++++.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~ 450 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKR 450 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766653
No 112
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=50.34 E-value=1.3e+02 Score=27.08 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 185 RESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 185 RESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|.++..-|.+-+.+...||.+-..|+....-.+.++..|+++
T Consensus 122 r~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k 163 (187)
T PF05300_consen 122 RASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEK 163 (187)
T ss_pred hhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566667788899999899999999999999998874
No 113
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.04 E-value=1.8e+02 Score=26.07 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.|...|+..+..++++.++|.++++++...
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555543
No 114
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.75 E-value=1.9e+02 Score=28.75 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+.+..++|+.++.+.=+.|...+.+=.++..+.|.+++..+.|-.++..+-.
T Consensus 26 i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~ 77 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAR 77 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777788777766666666666666665555555544433
No 115
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=49.63 E-value=34 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++++.+++.|+.+..+|..+++++.
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888777665
No 116
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.62 E-value=75 Score=25.20 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.-|.-++++|+++|..|..++..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566655555554443
No 117
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.34 E-value=68 Score=31.51 Aligned_cols=33 Identities=33% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKNQ 230 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~q 230 (254)
..++|-.++..|+++..+|..++.++++.....
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777664443
No 118
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.18 E-value=1e+02 Score=30.27 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQVL 232 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~ 232 (254)
.++|.+++..|+++..+|..++.++++.....++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888888876555443
No 119
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=49.13 E-value=57 Score=27.62 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
+.++.|..++.+|++.|..|+++..-|+...-...+..+-.+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~ 108 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQ 108 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 567778888888888888888888887766555555444333
No 120
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=48.97 E-value=1.6e+02 Score=24.68 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ 218 (254)
+.+..++|+.++...-+.|.+.+..=.+..++.|.++...+.+-.++..
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888887888777777777777777766665555554443
No 121
>PRK11239 hypothetical protein; Provisional
Probab=48.89 E-value=30 Score=31.92 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
...||.+|..|+.|.++|+.++++|.+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999988888765
No 122
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.52 E-value=1.9e+02 Score=26.75 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=43.4
Q ss_pred cchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 169 NVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 169 ~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-+...-..|.|-+.||.|==.+-| +-+..+..|..+++.|+.+|-.|-.++.=|..-
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345555667777888877766664 344557899999999999999999999888763
No 123
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=48.40 E-value=33 Score=27.63 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRK 218 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ 218 (254)
+|+.++.+|+.||+.|++
T Consensus 82 ~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 82 ELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 124
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=48.34 E-value=70 Score=25.50 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
..+..|..-+..|++.|..|..++.+|.+-.++..+|+
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888899999999999988887655555544
No 125
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.07 E-value=77 Score=22.20 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-|-...+.|+.+|+.|.++.+.|..+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777766666643
No 126
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.56 E-value=1.8e+02 Score=24.85 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+-+..++|+.++.+.-+.|...+..=.+...+.|.++...+.+-.++..+...--
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777667777777777666666665555444333
No 127
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=47.20 E-value=11 Score=40.53 Aligned_cols=52 Identities=31% Similarity=0.291 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAY----TMELE-AEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKay----leeLE-~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-.+.+.+++|=+.+..+|..++-. +.+.+ ++.+.|+.||.+|++++.+.+++
T Consensus 725 vpKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~ 781 (865)
T KOG1055|consen 725 VPKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEER 781 (865)
T ss_pred chhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHH
Confidence 456777788888888777655544 44554 47888999999999999887664
No 128
>smart00338 BRLZ basic region leucin zipper.
Probab=47.13 E-value=1e+02 Score=22.04 Aligned_cols=54 Identities=33% Similarity=0.421 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQ---AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKK---ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+...|+.+-.+.-+.+-.+-+..-. ..+..|+.+...|..++..|..++..|.+
T Consensus 5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555545555555444443332 34577888888888888888888888775
No 129
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.08 E-value=87 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL 223 (254)
|..++..+..|+..|..+++.-
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 130
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.90 E-value=67 Score=30.41 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++-+.|..+|.+|..+++++.+
T Consensus 149 ~EkeeL~~eleele~e~ee~~e 170 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQE 170 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 131
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.88 E-value=2.2e+02 Score=25.67 Aligned_cols=31 Identities=26% Similarity=0.146 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+..+.+|+.+.++|++++..++.+++.|+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777766554
No 132
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.84 E-value=1.6e+02 Score=26.96 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+..++.++..|+.++..+.+++..+.
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444444
No 133
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.40 E-value=20 Score=36.55 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.+++|++|+++|+++..+|.++++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 4445555555554444444444433
No 134
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.10 E-value=47 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~e~qk~ql~E 233 (254)
.+|+.++.+|..+++.|.++.....+|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999864433333
No 135
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.75 E-value=92 Score=28.00 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 188 AARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 188 A~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-..+.++.+.+.++|.++.+.+.|.+.++.++..|.++
T Consensus 153 ~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 153 ELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345566677778888888888888887777777654
No 136
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=45.63 E-value=79 Score=32.09 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
++.+.+.|.++..|++||..|..+...
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999988888765543
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=45.59 E-value=42 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql 220 (254)
.+||.|+.+|+.|......++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444333333
No 138
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.29 E-value=2.3e+02 Score=25.34 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eL 216 (254)
+....++|+.++.+.-+.|.+.+..=.+.+.+.|.++..-+.|-.++
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888888776666666666665555444444
No 139
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=45.20 E-value=41 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
+++|+.++..|+.|..+++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888776543
No 140
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=8.3 Score=41.16 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=10.5
Q ss_pred CCCCCCCC-CcccccccccCCC
Q 025340 63 QPQIFPKQ-PAMAYATQMPLQS 83 (254)
Q Consensus 63 ~~~~fpk~-~~~~~~~~~~~~n 83 (254)
|+.+||.+ +-++..+|.+-.|
T Consensus 82 ~~~~~P~~~~~~~~~~~A~~~~ 103 (1179)
T KOG3648|consen 82 QQQLQPPQPPFPAGGPPARRGG 103 (1179)
T ss_pred HHhhCCCCCCcccCCCHHHhcC
Confidence 34455544 4455555555444
No 141
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.35 E-value=2e+02 Score=25.36 Aligned_cols=25 Identities=48% Similarity=0.694 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+++.++..|+.++..|..++.+|.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666555555554
No 142
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=44.27 E-value=44 Score=31.15 Aligned_cols=10 Identities=60% Similarity=0.823 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 025340 209 LKEENEELRK 218 (254)
Q Consensus 209 Le~EN~eLk~ 218 (254)
|++||++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 143
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.26 E-value=32 Score=24.50 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 025340 205 EVAKLKEENE 214 (254)
Q Consensus 205 eV~~Le~EN~ 214 (254)
+++++++|++
T Consensus 56 ~l~~le~e~~ 65 (68)
T PF06305_consen 56 ELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 144
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.16 E-value=2.1e+02 Score=24.61 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+....++|+.++.+.=+.|.+.+..=++.+.+.+.++...+.+-.++..+...--
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888777766666666666666666555555554443333
No 145
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.11 E-value=96 Score=31.70 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+++|+++++|+.||..|+.+++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666553
No 146
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=43.66 E-value=79 Score=27.87 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.-.|..++.|+++|.+|+.++++|.+
T Consensus 43 SL~erQ~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 43 SLVERQLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555543
No 147
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.66 E-value=2e+02 Score=30.60 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.7
Q ss_pred cccCCCCCC
Q 025340 155 YMFNGSLRG 163 (254)
Q Consensus 155 ~~~~g~~rg 163 (254)
|.+.-|..|
T Consensus 473 Ykl~~G~~g 481 (771)
T TIGR01069 473 YKLLKGIPG 481 (771)
T ss_pred EEECCCCCC
Confidence 544433333
No 148
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=43.52 E-value=1.3e+02 Score=27.22 Aligned_cols=16 Identities=56% Similarity=0.725 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 025340 209 LKEENEELRKKQDEMM 224 (254)
Q Consensus 209 Le~EN~eLk~ql~eL~ 224 (254)
|.+||++|++++++|+
T Consensus 74 l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 74 LREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 149
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=43.38 E-value=1.3e+02 Score=33.56 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQV 231 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql 231 (254)
++++.-++-|..-+.++++.-.+.|+++.. ..|+++-+++.+++++.+
T Consensus 838 ~~kq~~~~~a~~~~~~ee~~r~~eee~~~r-----~~l~~qr~e~~e~tk~~~ 885 (1018)
T KOG2002|consen 838 RAKQEKEEEALIEKELEEARRKEEEEKARR-----EKLEKQREEYRERTKEIL 885 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555455544443 344455555555555543
No 150
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=43.15 E-value=1.1e+02 Score=25.83 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.|..-+++|+.+++.|+.+...|.++.+.+.++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~ 99 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQER 99 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666555543
No 151
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.08 E-value=1.4e+02 Score=28.10 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAARSRARKQAYTMELEAEVAKLK 210 (254)
Q Consensus 180 RmiKNRESA~RSR~RKKayleeLE~eV~~Le 210 (254)
++.+--.|.+....+.+..+++||.++...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666777777777777777766
No 152
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=42.99 E-value=2e+02 Score=24.08 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
-+..++|+.++.++-+.|...+..=.+...+.+.++...+.+-..+..+-.
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~ 84 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQ 84 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577778888888888877777777777777766666666555554443
No 153
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.86 E-value=2.6e+02 Score=29.16 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+....+.+-..........-+..++.|+.++...++++..|+.+.+++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466666666666655566666666655555555555555444443
No 154
>KOG2829 consensus E2F-like protein [Transcription]
Probab=41.47 E-value=58 Score=31.65 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLK 210 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le 210 (254)
++|++|++||+.++..++
T Consensus 149 ~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 149 KKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788899999999886644
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=2.2e+02 Score=27.00 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
+.....|..-=+.....+.-+++.+++++.++..|+.+..+|+..+.+..+..
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555566666666666666666666666666555554443
No 156
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=40.88 E-value=95 Score=26.03 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 202 LEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
-.+++..|++||.+..+++.+..++ +..+++.+.
T Consensus 102 Q~~~i~~L~~E~~~~~~el~~~v~e-~e~ll~~v~ 135 (144)
T PF11221_consen 102 QLKRIKELEEENEEAEEELQEAVKE-AEELLKQVQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3457777888888887777777654 555665554
No 157
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.79 E-value=1.8e+02 Score=32.12 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.4
Q ss_pred HHHHHH
Q 025340 201 ELEAEV 206 (254)
Q Consensus 201 eLE~eV 206 (254)
|||+++
T Consensus 372 ElekqL 377 (1118)
T KOG1029|consen 372 ELEKQL 377 (1118)
T ss_pred HHHHHH
Confidence 344433
No 158
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=40.71 E-value=55 Score=26.32 Aligned_cols=24 Identities=4% Similarity=0.030 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.++.++.+|+.++.+|+.+++-|+
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444
No 159
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.57 E-value=72 Score=35.66 Aligned_cols=41 Identities=29% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM-QKNQVLE 233 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~-qk~ql~E 233 (254)
..+...+++||..+-.|++||+.|.++|..|... |+..++|
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE 567 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE 567 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455677899999999999999999999999863 3333443
No 160
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.51 E-value=17 Score=39.00 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=20.3
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCCCCCc
Q 025340 57 TQQQPQQPQIFPKQPAMAYATQMPLQSSPGIK 88 (254)
Q Consensus 57 ~~~~~~~~~~fpk~~~~~~~~~~~~~n~~g~r 88 (254)
|+|++.+|+|.|-.....-|..-+..|.||..
T Consensus 80 ~~~~~~~P~~~~~~~~~~~A~~~~~~~~~~~K 111 (1179)
T KOG3648|consen 80 QQQQQLQPPQPPFPAGGPPARRGGAGAGGGWK 111 (1179)
T ss_pred HHHHhhCCCCCCcccCCCHHHhcCCCCCCCcc
Confidence 33444555566666666677788888866644
No 161
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.21 E-value=94 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..+.||.++..|++.-..|..++++|.++
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999999888876
No 162
>PTZ00234 variable surface protein Vir12; Provisional
Probab=40.14 E-value=86 Score=31.43 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=25.0
Q ss_pred hhHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 184 NRESAARSR----ARKQ-----AYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 184 NRESA~RSR----~RKK-----ayleeLE~eV~~Le~EN~eLk~q 219 (254)
||-|.-+|| +||| -|-+|-|+|++.-+.||+.|-.|
T Consensus 384 n~ss~lks~~~krkrkk~~~ehnyyeeyEkel~~y~se~~~ldsq 428 (433)
T PTZ00234 384 FKSTPIRSQTNKGEKKKRKPQNNYYDEYEEELPRYESQQSLAESQ 428 (433)
T ss_pred hcccchhccccchhhcccchhhhhHHHHHHhhccccccccccccc
Confidence 344444443 4555 47889999999988888887654
No 163
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.09 E-value=1.2e+02 Score=24.10 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEE 212 (254)
Q Consensus 199 leeLE~eV~~Le~E 212 (254)
+++|..+...|..|
T Consensus 27 ieELKekn~~L~~e 40 (79)
T PRK15422 27 IEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 164
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.03 E-value=2.4e+02 Score=24.12 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+-+..++|+.++...-+.|...+..=++...+.+.++...+.+-.++..+.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A 97 (167)
T PRK08475 47 LKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETA 97 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555555555555555555444444433
No 165
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=39.76 E-value=44 Score=32.34 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++++.+++.+|+++..+|++++.+|+
T Consensus 291 lDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 291 LDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555554
No 166
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.71 E-value=2.4e+02 Score=24.00 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+....++|+.++.+.=+.|...+..=.+.+.+.|.++...+.|-.++..+.
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 91 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888877778877777766666676766666555555544433
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.46 E-value=1.4e+02 Score=28.92 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQ 230 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~q 230 (254)
+..||.+..+|+.+|..|+-+++.+++++.-|
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q 85 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQ 85 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777777777777665443
No 168
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.36 E-value=64 Score=31.11 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++.|..++..|++||..|+.+...|.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777778888888777777766
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.36 E-value=76 Score=28.12 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|+.++..|..+|..|.++++.|.
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.24 E-value=2.3e+02 Score=23.65 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHHHHHhhHHHHH
Q 025340 177 RQRRMIKNRESAAR 190 (254)
Q Consensus 177 RqRRmiKNRESA~R 190 (254)
+..|+.+-|..|+.
T Consensus 38 el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 38 ELARLEAERDELRE 51 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 171
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=38.94 E-value=67 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 215 ELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 215 eLk~ql~eL~e~qk~ql~E 233 (254)
+|++++++|..+..+.|++
T Consensus 82 ~lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4555555554444444443
No 172
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.93 E-value=89 Score=24.96 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 025340 206 VAKLKEENEELRKKQD 221 (254)
Q Consensus 206 V~~Le~EN~eLk~ql~ 221 (254)
.+.|.+||+.|+.+.+
T Consensus 32 ~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 173
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.92 E-value=2.3e+02 Score=23.69 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 180 RmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
|.++.|..=--.|+==|+++..||-+...++.-+..|.+.++-|+-..+++....
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555566666788999999999999999999999999987666655433
No 174
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=38.55 E-value=2.8e+02 Score=24.58 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.....+.|+..+.++=+.|...|..=++++.+.+.++...+.|-.++..+...
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~ 125 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANY 125 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777777777766677777777776666665555544433
No 175
>PRK04325 hypothetical protein; Provisional
Probab=38.29 E-value=1.7e+02 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql 220 (254)
++.+||.++..++.-.++|-..+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777766555444444333
No 176
>PLN02678 seryl-tRNA synthetase
Probab=38.24 E-value=1.7e+02 Score=29.47 Aligned_cols=34 Identities=26% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
++..++|-+++..|+++...|..++.+++++...
T Consensus 70 ~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 70 KEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888888776444
No 177
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.59 E-value=4.3e+02 Score=29.82 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 181 MIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 181 miKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
=++||.--.-++.+...|-++.|.+..+|++....|++-+.+-...|-++|.|.+
T Consensus 1033 el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~ 1087 (1189)
T KOG1265|consen 1033 ELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESL 1087 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666677777777777777777776666666655555544444454444
No 178
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=37.32 E-value=62 Score=30.46 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-.+.||.++..|++||++|+.+++++.+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~ 61 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQ 61 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888887764
No 179
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.23 E-value=34 Score=33.83 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKE 211 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~ 211 (254)
.|=|+..++|..||+.||+
T Consensus 42 ~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 42 HSLKKENNDLKIEVERLEN 60 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566888888888833
No 180
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.14 E-value=3.1e+02 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
...+.+|+.+.+.|++.-+.|..+++++.++|+
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777787777888888888877644
No 181
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.84 E-value=1.1e+02 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+.-|.-+++.|+++|..|..+..
T Consensus 20 I~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHH
Confidence 34455566666666666555544
No 182
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.66 E-value=47 Score=30.37 Aligned_cols=25 Identities=40% Similarity=0.621 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+||++|+.|+.|..+|+..++.+.
T Consensus 188 ~dlearv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588888888888888888887664
No 183
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=36.41 E-value=89 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..++++.+.|..+|..|+.+++.|...
T Consensus 60 ~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 60 AAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466667777777777777777777654
No 184
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=36.39 E-value=2.8e+02 Score=25.41 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQA----YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKa----yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..-+|+||-+..+.++=.-+.+=-. ++...-.++..|+..|..|+...++|.+
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578889988888888655543322 3334445777788888888877777774
No 185
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.37 E-value=2e+02 Score=24.74 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.++.++..++.....++.+.+.+.+
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 186
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.23 E-value=2.6e+02 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
...+.....||.++..|+++...+..++.+
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555444444433
No 187
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=36.09 E-value=1.7e+02 Score=22.09 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.++++-++.++++-+.+..+..++..+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 188
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=36.06 E-value=1.2e+02 Score=27.44 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEE 212 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~E 212 (254)
.+...++|.+|..+-.+-.+.++++|++.++.-++.+...-.+
T Consensus 111 ~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~ 153 (225)
T PF01086_consen 111 PEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYEN 153 (225)
T ss_dssp TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777778888888888877777777654333
No 189
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=35.99 E-value=1.5e+02 Score=24.92 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 186 ESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 186 ESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..+..||..=-.+++||..++..||..-..|+..+++.+.
T Consensus 29 drsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 29 DRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 3456788888899999999999999999999988887764
No 190
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=35.84 E-value=93 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.|.++|+..|+.+......+.+.|+++...|++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~ 133 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKA 133 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678889998887665544444444444444443
No 191
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.47 E-value=83 Score=32.63 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+|..|+.+|..|...+..|+..
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788999999999999888754
No 192
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.46 E-value=1.8e+02 Score=25.58 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..-...+..|+.+.+.|+.+..+|+.+.+.+.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566555555555555555555443
No 193
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=35.41 E-value=1.3e+02 Score=27.49 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
|..+++.+.+|+..|+.++.+|.+
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544444
No 194
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=35.15 E-value=75 Score=27.92 Aligned_cols=58 Identities=17% Similarity=0.383 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccCCCCC
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQGGKRRCLRRTQTGPW 254 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~~~k~~~LRRT~t~pw 254 (254)
+++.|++|+...|..++ ++...++..|.-.|=+-|+.-+..+.|.--..|-+..-|+|
T Consensus 62 ~kk~kkky~K~vek~i~------~ef~~~lKkLT~sQGkiLiKLI~Retg~TsyelIK~~rgg~ 119 (157)
T PF14127_consen 62 NKKAKKKYIKRVEKYIK------EEFTPELKKLTRSQGKILIKLIDRETGSTSYELIKELRGGW 119 (157)
T ss_pred ChHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHhcCCcHHHHHHHhhCCh
Confidence 34555666666666554 34444555555444444566666777755556666666666
No 195
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=35.13 E-value=1.7e+02 Score=29.83 Aligned_cols=48 Identities=29% Similarity=0.345 Sum_probs=33.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEA------------EVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~------------eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-+|.+-=+-|.+-+..-++|++.||. +.+.|+.|+.+|..++++++++
T Consensus 146 ~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~ 205 (447)
T KOG2751|consen 146 NKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKE 205 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777888888887775 4556777777777777777755
No 196
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.12 E-value=2e+02 Score=24.95 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKL 209 (254)
Q Consensus 193 ~RKKayleeLE~eV~~L 209 (254)
++|++|+.+|......|
T Consensus 18 ~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 18 KKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999998766554
No 197
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.06 E-value=3.4e+02 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eL 216 (254)
...++|+.++...-+.|.+.+..=.+...+.|.++...+.+-.++
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 76 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVL 76 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555444444444444444444433333
No 198
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.66 E-value=1.5e+02 Score=27.42 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.+.+++.+++++..|+++.+++..+
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 33334444555555555555555443
No 199
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.09 E-value=1.3e+02 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..+..|..++..|+.+.+.+..++.++.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544444444
No 200
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.95 E-value=3.4e+02 Score=24.19 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
.++.+|-+.++.|-+.+|..++..-+..++.|+.--..-+++-...-..+.+|++...+.+.+.|.
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~ 217 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALW 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788888888888888888888887666667777777777778888776666655553
No 201
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.89 E-value=2.6e+02 Score=25.89 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=11.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAARSRARKQAYTMEL 202 (254)
Q Consensus 180 RmiKNRESA~RSR~RKKayleeL 202 (254)
-.++-|+.++..-.+|.+|+..+
T Consensus 153 ~vlk~R~~~Q~~le~k~e~l~k~ 175 (243)
T cd07666 153 GVIKRRDQIQAELDSKVEALANK 175 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555545554444443
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.64 E-value=4e+02 Score=25.37 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKL---------------KEENEELRKKQDEMMEMQKNQVL 232 (254)
Q Consensus 198 yleeLE~eV~~L---------------e~EN~eLk~ql~eL~e~qk~ql~ 232 (254)
.+.+|+.++..+ +...++|++++.+|.++ +.+|+
T Consensus 37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~~lL 85 (329)
T PRK06835 37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVK-KAELL 85 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHH
Confidence 457777777665 55567888888888765 55554
No 203
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.55 E-value=68 Score=30.00 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql 220 (254)
.+..+..+++.|++||.+|+..+
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456666666666666543
No 204
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.46 E-value=2.3e+02 Score=26.98 Aligned_cols=27 Identities=33% Similarity=0.483 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++..+++.+.+|+.+|.+++++|+.+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555443
No 205
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=33.45 E-value=1.3e+02 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhc
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMME--MQKNQVLEMMNMQ 238 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~e--~qk~ql~E~~~~~ 238 (254)
+-.+..+++.+.+.|++++.++...+.++.. ++.++|.+.++..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3445566666666666666666555444432 2344555555443
No 206
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=33.15 E-value=3.2e+02 Score=23.62 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
+-...++|..++...=+.|.+.|..=.+...+.|.++..-+.|-.++..+-.+-.+.+..
T Consensus 29 I~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ 88 (154)
T PRK06568 29 ILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQ 88 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777777777777777777777766666665555544444443333
No 207
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.96 E-value=3.3e+02 Score=27.26 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.|-|....-||.-+.++++||..|+-+++++..+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777888888889999999999888887754
No 208
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.87 E-value=1.6e+02 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+...-.+|.+|+.+++.|.+.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666543
No 209
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=32.85 E-value=75 Score=23.42 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 209 LKEENEELRKKQDEMMEM 226 (254)
Q Consensus 209 Le~EN~eLk~ql~eL~e~ 226 (254)
|..|++.|+++.++|...
T Consensus 38 l~~e~~~L~~qN~eLr~l 55 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555543
No 210
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.82 E-value=1.4e+02 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.++.++..|+..-..|.+++.++.
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 211
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.78 E-value=3e+02 Score=26.04 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql 220 (254)
.+++||.++..|+.|...|..+.
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444433
No 212
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=32.75 E-value=91 Score=30.39 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+...|.+|.++|++||.+|+.++..+++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~ 85 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEE 85 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777778888877776666543
No 213
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=32.64 E-value=5.5e+02 Score=26.86 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+...+-.|...+|-.=-- =-.|+.++-.+++.|+++|+.+.+++.+++..
T Consensus 350 ~~~~~~~r~~v~nsI~kc-----Le~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~ 399 (557)
T PF01763_consen 350 EPVQQAFRDSVSNSINKC-----LEGQINNQFDTIEDLKEENQDLEKKLRELESE 399 (557)
T ss_pred CcHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666532211 13577777778888899998888888888765
No 214
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=32.63 E-value=3.2e+02 Score=23.40 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~q 219 (254)
....++|+.++.+.-+.|.+.+..=.+.+.+.|.++...+.+-.++..+
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888887777666666666666666555555544443
No 215
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.60 E-value=3.7e+02 Score=24.13 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql 220 (254)
+.+++.|+..|..|.+.+
T Consensus 62 ~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 216
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=32.52 E-value=1e+02 Score=29.91 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~q 219 (254)
+|++.|+.++++|+.+.++|..+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665554
No 217
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=32.35 E-value=1e+02 Score=33.28 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 181 MIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 181 miKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.++.=+-|+.|...||+|++||+=++.-|.+ .+++.++..++++
T Consensus 415 ~l~ksq~~kl~k~q~k~y~de~dyr~kl~~k--kq~ke~~~r~k~~ 458 (763)
T TIGR00993 415 PLTKAQMAKLSKEQRKAYLEEYDYRVKLLQK--KQWREELKRMKMM 458 (763)
T ss_pred cccHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3445567889999999999999987766544 3455555555555
No 218
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.22 E-value=1.9e+02 Score=26.56 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.++++|+++-.++.....+|.+.
T Consensus 97 ~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 97 MKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655665555555544
No 219
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=32.15 E-value=1.6e+02 Score=21.71 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~e 222 (254)
..|..+++.|+++|.+|+.-+.+
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888876654
No 220
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.84 E-value=1e+02 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEM 223 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL 223 (254)
..|.+||.+|++++..|
T Consensus 3 ~ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666666533
No 221
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=31.67 E-value=1.2e+02 Score=25.95 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~q 219 (254)
++|+.++.+|+.|...|+-+
T Consensus 15 e~L~~ql~dLK~ELa~LRv~ 34 (123)
T KOG3436|consen 15 EQLLKQLDDLKVELAQLRVA 34 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888643
No 222
>PRK11020 hypothetical protein; Provisional
Probab=31.64 E-value=1.5e+02 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 184 NRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQV 231 (254)
Q Consensus 184 NRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql 231 (254)
.+.+|+..|. -.+-+.+++.|++.|+.+.+.|+.+...-.+.+-+.+
T Consensus 19 ~Klaaa~~rg-d~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 19 HKLAAASLRG-DAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444442 2345566777777788777777776655554444444
No 223
>PHA02109 hypothetical protein
Probab=31.63 E-value=1.4e+02 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E 233 (254)
-|-+.+.+||.+++.|..|..+++.++..+....+.-|-|
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999888888888777665544443
No 224
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.58 E-value=1.1e+02 Score=23.55 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.|..+..|+.||=.|+-++-.|.+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~ 29 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEER 29 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44555555555555555555555444
No 225
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.54 E-value=1.7e+02 Score=31.32 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+.+||.+-.+|.+|.+++..++++|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 226
>PRK00736 hypothetical protein; Provisional
Probab=31.53 E-value=2.2e+02 Score=21.26 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ 218 (254)
+++.+||.++..++.-.++|-.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~ 26 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSD 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788777665444444433
No 227
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=31.51 E-value=1.6e+02 Score=26.38 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
.|...||..+..|+++...++++++++....|.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~ 168 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKR 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999999888876555
No 228
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=31.45 E-value=3.1e+02 Score=23.02 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=21.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 177 RQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 177 RqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+|-.|||||-+. |+..+-...+.-.-|...|+-++.+...+.+.
T Consensus 56 E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqqsidsl 101 (121)
T PF10669_consen 56 EEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQSIDSL 101 (121)
T ss_pred HHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHHhHHHH
Confidence 44556677776432 22223223222222555666665555555443
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.36 E-value=2.2e+02 Score=23.98 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
--.++|..++..|+.|+..|..+++.|.+
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467888888899999999888888875
No 230
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.29 E-value=4e+02 Score=24.15 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-+..+..|+.++..|+..|..|..++.++...
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 334455667777777777777777777777644
No 231
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.16 E-value=2.6e+02 Score=22.52 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.|+.++..+..++++|+.++.++.+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444
No 232
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.10 E-value=60 Score=28.64 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.|+.++++|+.++.+|+.+
T Consensus 27 E~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666544
No 233
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.96 E-value=1.1e+02 Score=22.35 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk 217 (254)
+++...||.-...|.--.+.+.+|+.+...|+.+...++
T Consensus 11 ~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 11 RKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555655544555556677778888888877776654
No 234
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.78 E-value=41 Score=34.32 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++++|++|.++|++++++|.++
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHHhhcccccc
Confidence 38888888888888888876654
No 235
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.77 E-value=2.9e+02 Score=23.66 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKE---ENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~---EN~eLk~ql~eL~ 224 (254)
+.+....+..|+. .|++|+.++++|.
T Consensus 36 l~~~d~~i~~Lk~~~~d~eeLk~~i~~lq 64 (155)
T PF06810_consen 36 LKEADKQIKDLKKSAKDNEELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3333334444444 4444444444444
No 236
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.54 E-value=87 Score=23.96 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+.||+.++.-|..|.++|+.++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888877654
No 237
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.09 E-value=3.8e+02 Score=25.01 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.-++..+++|+.++..++.+..+++++++.+++.
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555443
No 238
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=30.01 E-value=3.9e+02 Score=24.28 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSR-ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 179 RRmiKNRESA~RSR-~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++.......|-+.. +|-+-++..||..+++-..||++|-+-.++|..+
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 3344567788888888888888888877777653
No 239
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=29.98 E-value=2e+02 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
++++..|+.+++.|+.+|..|+.+...+.+..+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~ 143 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRA 143 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888777765443
No 240
>PF15556 Zwint: ZW10 interactor
Probab=29.95 E-value=1.7e+02 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEA 204 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~ 204 (254)
--|+|.|.+-+.=......++..|.+
T Consensus 116 va~eK~r~AQkqwqlqQeK~LQ~Lae 141 (252)
T PF15556_consen 116 VAMEKLRAAQKQWQLQQEKHLQHLAE 141 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445544433333333344444443
No 241
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.88 E-value=1.7e+02 Score=19.69 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|-.+.+.|+...+.|+.+++.|.
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666667777777666664
No 242
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.86 E-value=2.6e+02 Score=28.35 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 174 VERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 174 eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
.|+|.|++|+.=|. -|.++-.|..+-..-+..|++|-+.|..+++--.+..+.--++..++
T Consensus 112 aE~khrKli~dLE~---dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl 172 (561)
T KOG1103|consen 112 AEKKHRKLIKDLEA---DREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKL 172 (561)
T ss_pred HHHHHHHHHHHHHH---HHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 243
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.83 E-value=2.5e+02 Score=21.25 Aligned_cols=22 Identities=36% Similarity=0.244 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ 218 (254)
+++.+||.++..++.-.++|-.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766655444444433
No 244
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=29.57 E-value=1.3e+02 Score=27.86 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 188 AARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 188 A~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|.....+=+......+..+++|+.|+..|++++++|.
T Consensus 103 A~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 103 ALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445556667777777777777777665
No 245
>PRK10722 hypothetical protein; Provisional
Probab=29.52 E-value=1.7e+02 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRES------AARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 176 RRqRRmiKNRES------A~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-+-++.+.+.- +.|.|- +.-.++-+.+++.|.+.+.+|+.+++...++
T Consensus 144 rPL~qlwr~~Q~l~l~LaeEr~Ry--~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rK 198 (247)
T PRK10722 144 RPLYQLWRDGQALQLALAEERQRY--QKLQQSSDSELDALRQQQQRLQYQLELTTRK 198 (247)
T ss_pred hHHHHHHHHhhHHHHhHHHHHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555533 444443 3333455678888888888888888877765
No 246
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=29.52 E-value=2.3e+02 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 180 RmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.++.=|.+|....+|+++.+..|..-+..--+|-++.+.++..|.
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999999999999988888889999999888777
No 247
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.38 E-value=1.9e+02 Score=22.96 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+|.++..|++.-..|.++++++.+
T Consensus 78 ~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 78 TLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555554
No 248
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.15 E-value=2.5e+02 Score=21.02 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.-...+|.++..-+..|.+|..+++.|.+
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555556666555555554
No 249
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.13 E-value=3.9e+02 Score=23.32 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEE 212 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~E 212 (254)
+....++|+.++..+-+.|.+.+..=.+...+.|.++..-+.|
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~e 77 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTE 77 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777766444444444444333333
No 250
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=29.03 E-value=3.6e+02 Score=22.84 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+....++|+.++.+.-+.|.+.|..=.+...+.|.++...+.|-.++..+-
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A 85 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAA 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888887777777777777766665555554443
No 251
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=28.76 E-value=1.5e+02 Score=30.95 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCcccc
Q 025340 209 LKEENEELRKKQDEMMEMQKNQVLE-MMNMQQGGKRRCLRR 248 (254)
Q Consensus 209 Le~EN~eLk~ql~eL~e~qk~ql~E-~~~~~~~~k~~~LRR 248 (254)
-..+.-.|...++-+... .+|+-| +||. |--||.|
T Consensus 561 pQTKLgILhqAVsVIlsL-EQQVRERNLNP----KaaclkR 596 (632)
T KOG3910|consen 561 PQTKLGILHQAVSVILSL-EQQVRERNLNP----KAACLKR 596 (632)
T ss_pred cchhhhHHHHHHHHHHHH-HHHHHHccCCh----hhhhhhc
Confidence 344556677777777655 344443 3333 3446655
No 252
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=28.72 E-value=1.9e+02 Score=21.72 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.++.++..|+.+-..+..+++++..
T Consensus 72 ~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 72 EKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 253
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=28.72 E-value=4.5e+02 Score=23.95 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
.+..+|.+.+..+-+.+|..++..-+.+++.|+.--..-+++-..--....+|++...+-+.+++
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~l 216 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNAL 216 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888888999988888888888876666666666666667777766555444443
No 254
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.56 E-value=3e+02 Score=23.00 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~q 219 (254)
..++=.+|+.+||..+..++.++.++.++
T Consensus 56 ~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 56 ALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444433
No 255
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.36 E-value=1.5e+02 Score=23.32 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 177 RQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 177 RqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
...++|+-=...+.+=.==-.+++..+.+.+.|+.||+-|..=+..|..
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445665555555555556677888888999999999999988888865
No 256
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=28.27 E-value=4.2e+02 Score=23.43 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
..+|-+.++.|=...+..++..-+..+..|..--..-.++-...-..+.+|++.....+.+.+
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l 213 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNC 213 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777777777777777665555666666666667777766555554443
No 257
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.25 E-value=65 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
-+|+..||.|...|+.||+.+...|..
T Consensus 121 lqKIsALEdELs~LRaQIA~IV~~qe~ 147 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIVAAQEQ 147 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 357788999999999999999977554
No 258
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.20 E-value=5e+02 Score=24.27 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEA 204 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~ 204 (254)
.-.+....+..++|+-++..++|.++....|++
T Consensus 91 ~~~~~~~~~~~~~req~~~~~~K~~e~~~ql~k 123 (233)
T KOG4739|consen 91 LQVKLELKQLEKDREQTAYFEKKTQEETQQLSK 123 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888887776666665
No 259
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.11 E-value=4.8e+02 Score=29.00 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E 233 (254)
|-......+-.+=+--+.+-...++.|...+..|+.||++|..++..+.+. ..|+.+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~-hsql~~ 706 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISE-HSQLKD 706 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333444444444444455555556666666777777777777777666543 444443
No 260
>PRK10963 hypothetical protein; Provisional
Probab=28.10 E-value=1.6e+02 Score=26.24 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=12.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKL---KEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~L---e~EN~eLk~ql~eL~ 224 (254)
..||.++.+| -.+|+.+..++..|.
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~ 81 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQ 81 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444332 345666666655554
No 261
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=27.99 E-value=4.6e+02 Score=23.81 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
+..+|-+.++.+-..++..++..-+..+..|...-..-.++-...-..+.+|+++...-+.+.+.
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~ 232 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILL 232 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777888888877777777777666667777777777778888776666666553
No 262
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=27.96 E-value=3.6e+02 Score=22.49 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=24.2
Q ss_pred HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRE-SAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 182 iKNRE-SA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+|+. |..+.|.+++. .|...+.+.+.|.++|+.+.+.|...
T Consensus 67 ~RN~l~s~~k~R~~~~q---~lq~~I~Ek~~eLERl~~E~~sL~kv 109 (120)
T PF14931_consen 67 ARNLLKSEAKQREAQQQ---QLQALIAEKKMELERLRSEYESLQKV 109 (120)
T ss_pred hHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 33445555554 44555566666667777777766644
No 263
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.95 E-value=2.9e+02 Score=22.07 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
.+.|.++.++|+.|-..-..+++....++|+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777777777666665554
No 264
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.94 E-value=2.2e+02 Score=21.02 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+..++..++.+.+.++.+.++|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 265
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.50 E-value=2.7e+02 Score=23.03 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELR 217 (254)
Q Consensus 205 eV~~Le~EN~eLk 217 (254)
++++.+.|.++.+
T Consensus 33 eL~~~k~el~~yk 45 (128)
T PF06295_consen 33 ELEQAKQELEQYK 45 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 266
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.14 E-value=3.7e+02 Score=22.40 Aligned_cols=42 Identities=40% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eL 216 (254)
.-..||+..-..+.+..=.+=.+.-+.|..++-.|..+|+++
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444333333333344445555555444444
No 267
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.09 E-value=1e+02 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
-+|...++.|.+|-++++.++++|.+
T Consensus 200 ~~l~V~td~L~keAe~i~~~lekl~e 225 (244)
T COG1938 200 LGLNVDTDKLEKEAEEIEEQLEKLAE 225 (244)
T ss_pred hcCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666655554
No 268
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.01 E-value=3.7e+02 Score=22.41 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
++.++.+++.|+..-..|..-.+++...+++.+.+.+
T Consensus 83 ~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~ 119 (134)
T cd04779 83 VQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKEL 119 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666666666666555555444444
No 269
>PRK00295 hypothetical protein; Provisional
Probab=26.52 E-value=2.8e+02 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ 218 (254)
++.+||.++..++.-.++|-.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777777665544444433
No 270
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.51 E-value=1.5e+02 Score=21.47 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
+++.+..|.+++.+..+.++|.++-+.|
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566777888887777776666554443
No 271
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=26.51 E-value=2e+02 Score=29.00 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhHH
Q 025340 175 ERRQRRMIKNRES 187 (254)
Q Consensus 175 eRRqRRmiKNRES 187 (254)
|+|.++.+|-||-
T Consensus 289 ~~~~~~~~~~~~~ 301 (429)
T PRK00247 289 EQRAQYREKQKEK 301 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 272
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.43 E-value=4.3e+02 Score=22.91 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=21.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++.+.+...+.+-........+.+.+++.-++.|..|...|.-++..++
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e 164 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLE 164 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433344444444444444444444444444443333
No 273
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.40 E-value=3.6e+02 Score=24.58 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..|..++..|.+||..|..+.+.+..
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 44556666666666666655555553
No 274
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=26.35 E-value=4.7e+02 Score=27.63 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=7.1
Q ss_pred HHHhhHHHHHHHHHHH
Q 025340 181 MIKNRESAARSRARKQ 196 (254)
Q Consensus 181 miKNRESA~RSR~RKK 196 (254)
-.+-|+-|.|+|++-+
T Consensus 219 ~e~kr~Eaerk~~~~q 234 (591)
T KOG2412|consen 219 SEEKREEAERKRRAHQ 234 (591)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 3344444444444433
No 275
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.24 E-value=2.7e+02 Score=27.20 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+..|+.+...|+.+...+++++..++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665543
No 276
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.24 E-value=5.8e+02 Score=24.36 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..++.++.++.+.+.+..+++.++++...
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555554443
No 277
>smart00030 CLb CLUSTERIN Beta chain.
Probab=26.24 E-value=3.6e+02 Score=24.87 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQGGKRRCLRRT 249 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~~~k~~~LRRT 249 (254)
+++.+++.+.-+-.=+.-..|+-...+.++..||+--++=++-....+.-.+.|.+. ..---|.+..-|+.=+.||+-|
T Consensus 20 vd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~-~~vCnetm~alWeECKpCLk~t 98 (206)
T smart00030 20 INKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKES-QGVCNETMMALWEECKPCLKQT 98 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHH
Confidence 456666666666556666667777778888888764333222222222223333332 2223356666677656677643
No 278
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=26.04 E-value=3.6e+02 Score=21.88 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk 217 (254)
...+.|+.++.+.=+.|...+..=.+...+.+.++...+.+-.++.
T Consensus 22 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~ 67 (147)
T TIGR01144 22 KAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEII 67 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766666666666666655554444444
No 279
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=25.93 E-value=2.7e+02 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 169 NVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 169 ~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
....++.-|.+| |.|-+..-+||++.++.|+.....|..+..-....-+++
T Consensus 75 ~I~iK~~lReKR----r~a~k~~~~RK~~~i~~l~~~~~~ld~~d~~yeEikt~~ 125 (425)
T PF04599_consen 75 SINIKEPLREKR----RKALKNTIKRKREEIENLEDCIKNLDVDDEFYEEIKTDL 125 (425)
T ss_pred ccchhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344555445555 667777779999999999988776665443333333333
No 280
>PRK00846 hypothetical protein; Provisional
Probab=25.88 E-value=3.2e+02 Score=21.32 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLK 210 (254)
Q Consensus 197 ayleeLE~eV~~Le 210 (254)
+++++||.++...+
T Consensus 13 ~Ri~~LE~rlAfQe 26 (77)
T PRK00846 13 ARLVELETRLSFQE 26 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666554433
No 281
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=25.87 E-value=2.1e+02 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|+.++..|+.++..|..+++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~ 49 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLK 49 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444
No 282
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.84 E-value=3.5e+02 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.|+.+...|+.+-.+|.+.++.|..
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 283
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.83 E-value=2.6e+02 Score=22.06 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMME 225 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~e 225 (254)
+.|+.||+.|+.+...+.+
T Consensus 49 eaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 49 EALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 284
>PRK02119 hypothetical protein; Provisional
Probab=25.77 E-value=3e+02 Score=20.89 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk 217 (254)
+++.+||.++..++.-.++|-
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN 29 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELN 29 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677776655444444433
No 285
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.66 E-value=3.9e+02 Score=22.17 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAARSRARKQAYT--------------MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 180 RmiKNRESA~RSR~RKKayl--------------eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++...-+.|...-.+|++.+ ..|+.++..++.+-..++.+.+.+...
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~ 174 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISER 174 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455655555555444 444445555554444444444444433
No 286
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=25.63 E-value=3.3e+02 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
+++..+++.|.+|+.+|+++++.|.++......+.
T Consensus 757 ~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~ 791 (900)
T PRK13902 757 EQLPKTVERFFEEWKEQKKEIEKLRKELAELLASE 791 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888876654444444
No 287
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.57 E-value=1.8e+02 Score=30.25 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..||.++..|+.||..|..++..+..
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345666777788888888877777764
No 288
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.51 E-value=1.8e+02 Score=23.70 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..++.+|+.+|..|..++..++
T Consensus 21 RRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 21 RRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444443
No 289
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=25.49 E-value=2.1e+02 Score=30.48 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.+|++|-++|.+++++|++
T Consensus 428 e~~kl~~e~~~l~~~i~~l~~ 448 (738)
T TIGR01061 428 DIFELKEEQNELEKKIISLEQ 448 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777765
No 290
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.42 E-value=1.4e+02 Score=22.08 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~e 222 (254)
+|.+++.||.+..+.+.+.+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 291
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.30 E-value=5.5e+02 Score=26.31 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 182 iKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-+|-.+|+.--+|-.+...+|..++..|-++-..|..+...|...
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666666666666666666555555443
No 292
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=25.28 E-value=3.6e+02 Score=21.67 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~q 219 (254)
+..+.|+.++...=+.|...+..=.+.+.+.|.++...+.+-.++..+
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666555555566666555555554444433
No 293
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=25.22 E-value=1.1e+02 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
..+.+||.++++-+.||+.|+.++.+|.+- ..+++-
T Consensus 67 ~ei~~Le~kIs~q~~e~~dlkqeV~dLss~--eRIldi 102 (120)
T COG4839 67 GEITDLESKISEQKTENDDLKQEVKDLSSP--ERILDI 102 (120)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHhccH--HHHHHH
Confidence 346789999999999999999999999863 334443
No 294
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.11 E-value=4e+02 Score=22.13 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk 217 (254)
....++|+.++...-+.|...+..=.+.+.+.+.++...+.|-.++.
T Consensus 28 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii 74 (159)
T PRK09173 28 ARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIV 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888877766666666666665555444443
No 295
>PRK10093 primosomal replication protein N''; Provisional
Probab=25.05 E-value=4.2e+02 Score=23.68 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAAR------SRARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~R------SR~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
-+-|||+.-|++.||.+-. ...+=+..+.-||.++...+.-...+.+.++
T Consensus 112 Qd~ERRL~~Mv~dre~~L~~a~~~~~qq~lq~el~alegRL~RCrqAl~~IE~~Ie 167 (171)
T PRK10093 112 QEFERRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLARCRHALEKIENVLA 167 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458899999999998765 2223345555666666655555554444443
No 296
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.99 E-value=1.5e+02 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|...+..|++++..+..+.+.+...
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQK 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 297
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.91 E-value=1.7e+02 Score=25.91 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql 220 (254)
+.|..++..|+.|...|+.++
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555
No 298
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.83 E-value=3.7e+02 Score=21.91 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 192 RARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 192 R~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
+.+-.....+++.+++..+.+..+|+.++.......++
T Consensus 76 ~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 76 RENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666777788888888888888877765444
No 299
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.80 E-value=3.1e+02 Score=21.45 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAK 208 (254)
Q Consensus 197 ayleeLE~eV~~ 208 (254)
+++.+||.+++.
T Consensus 8 ~Ri~eLE~r~Af 19 (72)
T COG2900 8 ARIIELEIRLAF 19 (72)
T ss_pred HHHHHHHHHHHH
Confidence 345566665544
No 300
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=24.64 E-value=3.4e+02 Score=22.59 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAE--VAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 193 ~RKKayleeLE~e--V~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+++.|+..++.. +..+.....+|+.+++...+.
T Consensus 77 E~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~ 112 (139)
T PF13935_consen 77 ERAQQRIAELEQECENEDIALDVQKLRVELEAAEKR 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555544 444555555555544444443
No 301
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.58 E-value=2.2e+02 Score=25.51 Aligned_cols=11 Identities=55% Similarity=0.712 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 025340 214 EELRKKQDEMM 224 (254)
Q Consensus 214 ~eLk~ql~eL~ 224 (254)
.++++++++|+
T Consensus 156 ~e~~~~l~~l~ 166 (176)
T PF12999_consen 156 EELEKKLEELE 166 (176)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 302
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.53 E-value=1.9e+02 Score=23.53 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 167 NGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 167 ~~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
.+...+.+.-++-.-++++|..+.-.-|+| |+.+++.-+++.++|.+.|
T Consensus 51 g~~f~krE~A~E~~Y~r~~EkEqL~~Lk~k-----l~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 51 GGAFGKREAAQEEQYFRKKEKEQLKKLKEK-----LKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhc
Confidence 344555555555556666555444433322 2223333555555555544
No 303
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=24.46 E-value=1.9e+02 Score=20.71 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++|...+.+++.+|.+-..++.+|+.=
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~Y 29 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDY 29 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999988888888864
No 304
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.33 E-value=1.8e+02 Score=24.52 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 208 KLKEENEELRKKQDEMME 225 (254)
Q Consensus 208 ~Le~EN~eLk~ql~eL~e 225 (254)
+|..+..+|..+++.|.+
T Consensus 113 el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 305
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.24 E-value=3.5e+02 Score=21.11 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 025340 228 KNQVLEMM 235 (254)
Q Consensus 228 k~ql~E~~ 235 (254)
+.+..+.+
T Consensus 108 ~~~a~~~l 115 (132)
T PF00430_consen 108 KEKAKKEL 115 (132)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 306
>PRK09039 hypothetical protein; Validated
Probab=24.13 E-value=6e+02 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL 223 (254)
.||..+..++.+..+.+.++++|
T Consensus 155 ~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 155 ALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 307
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.05 E-value=3.6e+02 Score=21.18 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+|+.+.+.+=|+|-..|--+.....++|.++..|......|-.++.....
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~a 60 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEA 60 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 445555555555555555444444466666666555555555555544443
No 308
>PHA01750 hypothetical protein
Probab=23.92 E-value=2.1e+02 Score=22.39 Aligned_cols=19 Identities=58% Similarity=0.747 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL 223 (254)
|+..|..|.++++.++.+|
T Consensus 43 ELdNL~~ei~~~kikqDnl 61 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDEL 61 (75)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3333444444444444443
No 309
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=23.92 E-value=8.9e+02 Score=25.75 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEV 206 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV 206 (254)
++...||-.-++|.---|...|.||+..-.+.|.+-
T Consensus 387 dema~kraallekqqrraeear~rkqqleae~e~kr 422 (708)
T KOG3654|consen 387 DEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKR 422 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555577777788888999987555555433
No 310
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=23.85 E-value=5.2e+02 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
++.+.|...+..+..++.+|..++.+|.-..
T Consensus 78 ~~~~~l~d~inE~t~k~~El~~~i~el~~~~ 108 (165)
T PF09602_consen 78 ATGNSLNDSINEWTDKLNELSAKIQELLLSP 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 6788888888888888888888887776443
No 311
>PRK04863 mukB cell division protein MukB; Provisional
Probab=23.73 E-value=4.3e+02 Score=30.71 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=43.7
Q ss_pred cchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 169 NVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 169 ~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+.+..+.+.+++.+.++.|+.--.+.++.....+.++..+++....+.+++++++..
T Consensus 985 ~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe 1042 (1486)
T PRK04863 985 DLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQE 1042 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888877777777777777777777777777777666544
No 312
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.68 E-value=89 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARK 195 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RK 195 (254)
.+||+++++.|.-+.-..+|+.|
T Consensus 50 ~~ere~K~k~Kr~~~i~k~rr~k 72 (74)
T PF15086_consen 50 KEEREKKKKAKRQANIAKARRTK 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444443
No 313
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.67 E-value=4.1e+02 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
+++++.+.|=+-..+++++.-+.|++.||.--++.+.|=..+-.+.+++++..-
T Consensus 135 ~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl 188 (611)
T KOG2398|consen 135 EKRKKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRL 188 (611)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666677777777776666666666666555555555433
No 314
>PRK04406 hypothetical protein; Provisional
Probab=23.62 E-value=3.4e+02 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eL 216 (254)
++.+||.++..++.-.++|
T Consensus 12 Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 12 RINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666655544443333
No 315
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.53 E-value=5.3e+02 Score=29.17 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 025340 193 ARKQAYTMELE 203 (254)
Q Consensus 193 ~RKKayleeLE 203 (254)
.++...+.+|+
T Consensus 713 ~~~~~em~el~ 723 (1074)
T KOG0250|consen 713 RKKRAEMTELK 723 (1074)
T ss_pred HHHHHHHHHHh
Confidence 33333344443
No 316
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=23.50 E-value=6.2e+02 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.++..+.+..........|++++.++-+.
T Consensus 125 ~iE~y~~e~pkv~~QFaDLKr~LatvTe~ 153 (913)
T KOG0495|consen 125 EIEKYRKENPKVQQQFADLKRKLATVTED 153 (913)
T ss_pred HHHHhhccChhHHHHHHHHHHHHhhcCHH
Confidence 33444455666777777777777777654
No 317
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.32 E-value=4.4e+02 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.340 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 025340 229 NQVLEMM 235 (254)
Q Consensus 229 ~ql~E~~ 235 (254)
++.+|++
T Consensus 142 nrka~~~ 148 (233)
T KOG4739|consen 142 NRKAERL 148 (233)
T ss_pred HHHHHhc
Confidence 3344443
No 318
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=23.20 E-value=76 Score=31.69 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 191 SRARKQAYTMELEAEVAKLKEEN 213 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN 213 (254)
.|+-|++.+++||+++..|+.|.
T Consensus 396 ~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 396 EREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556777899999999998875
No 319
>PF15294 Leu_zip: Leucine zipper
Probab=23.14 E-value=2e+02 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+=|.++..+|......-.|...|..++.+|..
T Consensus 142 ~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 142 EKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666777766666664
No 320
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.13 E-value=2.3e+02 Score=21.12 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++.|...|..|......|...+..+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444443
No 321
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.01 E-value=3.2e+02 Score=20.24 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+++.+||.++..++...++|-..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766665554444444333
No 322
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=22.98 E-value=4e+02 Score=25.70 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-|++..+.+++|+.+.+.|.++|...+..+..|...
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~ 137 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQ 137 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356666777777777777777777777777777654
No 323
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.91 E-value=4.3e+02 Score=27.97 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+|+++|+.|+.++.+|.++++.++
T Consensus 83 ~L~~everLraei~~l~~~I~~~e 106 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESRE 106 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444433
No 324
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=22.89 E-value=4e+02 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+.+||+++++|+.|.-++..-.+.|+
T Consensus 93 ~i~dle~~l~klE~el~eln~n~~~L~ 119 (829)
T KOG2189|consen 93 EIIDLEEQLEKLESELRELNANKEALK 119 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455566666666665555555444444
No 325
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.83 E-value=5.9e+02 Score=28.43 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=11.3
Q ss_pred CCCCCCCCcc-cccccccCCCCCCCccc
Q 025340 64 PQIFPKQPAM-AYATQMPLQSSPGIKSG 90 (254)
Q Consensus 64 ~~~fpk~~~~-~~~~~~~~~n~~g~r~~ 90 (254)
-.|+|.+.++ .|- -.|.||..-.
T Consensus 532 ~~L~p~~gSL~~fL----~~~~p~We~t 555 (1201)
T PF12128_consen 532 RQLDPQKGSLLEFL----RKNKPGWEQT 555 (1201)
T ss_pred HhhCCCCCcHHHHH----HhCCCcHHHH
Confidence 4477766443 221 1236666554
No 326
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=22.76 E-value=1.2e+02 Score=29.48 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+..|.+||++|++++.+|+++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~ 79 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEER 79 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777777777777543
No 327
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.69 E-value=3.1e+02 Score=28.90 Aligned_cols=45 Identities=31% Similarity=0.475 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhh
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQD---------EMMEMQKNQVLEMMNM 237 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~---------eL~e~qk~ql~E~~~~ 237 (254)
.+.+..+++-|.+++.|+.+|.+|+.+++ +.+...++++...++.
T Consensus 297 ~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 297 EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
No 328
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.49 E-value=3e+02 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.++..|+..-..|+++++++..
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555566655555543
No 329
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=22.44 E-value=2.3e+02 Score=23.75 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eL 216 (254)
.++.+...+..+.|+++...++ .+.+|++-.++.+++.++
T Consensus 46 ~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 46 QKRMKEFQKRYRELRKNGDFKK--PKKLEKRQMELMEKQQEM 85 (168)
T ss_pred HHHHHHHHHHHHHHHHcCCccC--HHHHHHHHHHHHHHHHHH
Confidence 4445555555555555443222 344555544444444444
No 330
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=22.42 E-value=5.5e+02 Score=24.22 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+.+|+.+++.++++.+.+..+++++.+
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666655555443
No 331
>PRK04325 hypothetical protein; Provisional
Probab=22.40 E-value=3.1e+02 Score=20.81 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 025340 212 ENEELRKKQDEM 223 (254)
Q Consensus 212 EN~eLk~ql~eL 223 (254)
+...|++++..|
T Consensus 38 ~I~~L~~ql~~L 49 (74)
T PRK04325 38 TLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 332
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=22.35 E-value=3.4e+02 Score=22.06 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+...++.++.||+.|..+...|+.
T Consensus 55 l~~qi~~~~~e~~~L~~~~~~l~~ 78 (117)
T COG2919 55 LQRQIAAQQAELEKLSARNTALEA 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544443
No 333
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=22.14 E-value=97 Score=29.23 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+.+||.+|++|.+|.++|+++-+
T Consensus 20 vreleakveelnkereelkkere 42 (347)
T PF06673_consen 20 VRELEAKVEELNKEREELKKERE 42 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 45788888888888888887654
No 334
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.93 E-value=2.9e+02 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
.+++.+++.+++.|+..+.+|..+++.+..+ ...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 47 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERE-LERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
No 335
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.84 E-value=3.3e+02 Score=27.50 Aligned_cols=29 Identities=41% Similarity=0.390 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+...|.++++.|..+...+..++.++...
T Consensus 69 ~~~~l~~e~~~l~~~l~~~e~~~~~~~~~ 97 (429)
T COG0172 69 DAEELIAEVKELKEKLKELEAALDELEAE 97 (429)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56777778888888887777777777654
No 336
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.71 E-value=3.3e+02 Score=20.86 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..+++..+.-+|+.++..|++++.++...
T Consensus 36 ~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 36 ESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777666665543
No 337
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=21.69 E-value=2.1e+02 Score=17.58 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEEL 216 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eL 216 (254)
.+||++...|++|...+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46788888888777654
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.61 E-value=4.1e+02 Score=25.16 Aligned_cols=49 Identities=35% Similarity=0.345 Sum_probs=29.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 178 QRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 178 qRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
......+-+.|...=+.++..+.+++.++..|+.+.+...++...|...
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444446677777777777777777777766666655543
No 339
>PF14645 Chibby: Chibby family
Probab=21.61 E-value=2.4e+02 Score=23.33 Aligned_cols=25 Identities=32% Similarity=0.170 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..|++|..-|+-+++-|-.-+++-.
T Consensus 81 ~~L~EENN~Lklk~elLlDMLtett 105 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELLLDMLTETT 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777777777766665544
No 340
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.57 E-value=2e+02 Score=27.82 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+++++|.++..|+....++...++.+.
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~ 171 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELE 171 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 4566666666666666666666655554
No 341
>PRK04406 hypothetical protein; Provisional
Probab=21.56 E-value=3.8e+02 Score=20.53 Aligned_cols=11 Identities=0% Similarity=-0.043 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 025340 211 EENEELRKKQD 221 (254)
Q Consensus 211 ~EN~eLk~ql~ 221 (254)
.+...|++++.
T Consensus 39 ~~I~~L~~ql~ 49 (75)
T PRK04406 39 LLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 342
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=21.51 E-value=4.8e+02 Score=27.80 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 182 iKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+-+++-...+.++++.++.|..++..||.|..-|.-++..+...
T Consensus 18 ~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~ 62 (654)
T PF09798_consen 18 QALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSS 62 (654)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444455566777888888888999999988888888777654
No 343
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=21.29 E-value=6.8e+02 Score=23.42 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 171 EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 171 e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
.+..+|-+.|+.|=+++|..++.+-.+-+++|+.--..-+++-...-....+++++...-+.++|
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L 231 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEML 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788888999999998888888888876666666666666667777766555555554
No 344
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.28 E-value=2.7e+02 Score=24.48 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~ 224 (254)
-.+++.|+.++.+|+.+++.+.
T Consensus 109 l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 109 LEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666444
No 345
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.21 E-value=4.7e+02 Score=21.51 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..+.+++...-+.....-.|=+..++++|.++..++..-..|..++..+.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555544444444444444443
No 346
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.05 E-value=2.1e+02 Score=22.50 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+|-++...|+.|...|+.++.++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888776666553
No 347
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.99 E-value=3.1e+02 Score=21.39 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.|+.+++.|+++...+..+++++..
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544443
No 348
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.94 E-value=3.7e+02 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~q 219 (254)
+|+.++..+..|.+.++++
T Consensus 31 elkd~~lR~~AefeN~RKR 49 (208)
T PRK14155 31 ALKDQALRYAAEAENTKRR 49 (208)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 349
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.94 E-value=3e+02 Score=20.81 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+.++|..+..|....+.+..+++.|.+
T Consensus 40 ~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 40 AKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 350
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.92 E-value=5.5e+02 Score=29.87 Aligned_cols=69 Identities=28% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccC
Q 025340 180 RMIKNRESAARSRA--------RKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQGGKRRCLRRTQ 250 (254)
Q Consensus 180 RmiKNRESA~RSR~--------RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~~~k~~~LRRT~ 250 (254)
.-+-++.++.|+|. ..+..++.|+.++..++.+...++.++..+++. -..++..... -|-.++..||.+
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~-W~~v~~~~~~-~~~~~~l~~~~~ 1139 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG-WCAVLRLVKD-NGVERRLHRREL 1139 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-cChhhhhhHhhh
Confidence 45667777777664 334444455555555555555554444444432 1122222221 244455666654
No 351
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.83 E-value=5.1e+02 Score=21.77 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
....|+|..-.- =+.-+++|-.+|+..++||-.|+.+..-|-
T Consensus 56 EEKaRlItQVLE-------LQnTLdDLSqRVdsVKEEnLKLrSENQVLG 97 (120)
T KOG3650|consen 56 EEKARLITQVLE-------LQNTLDDLSQRVDSVKEENLKLRSENQVLG 97 (120)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 445566654322 234567888888888888888888766654
No 352
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.79 E-value=3.6e+02 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
....|..+.+.|+.+...|.++++++..
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666665553
No 353
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.74 E-value=2.4e+02 Score=25.87 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
-+.+|..+++.|+.|..+|+-+++++.- +-+++.+.-+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~-~l~~~~~rq~~ 93 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQY-QLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHH
Confidence 4568889999999999999998888764 34455544433
No 354
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=20.72 E-value=33 Score=27.72 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
.+.+||.++..|+.+.++|+.++++|++..
T Consensus 14 ~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 14 ELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -----------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999998888653
No 355
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.68 E-value=3.2e+02 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRESAARSRARKQAYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 182 iKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ 218 (254)
.+.|+.....-++|++++..|...+..|.+--..++.
T Consensus 114 ~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 114 EQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555554444444433333
No 356
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.48 E-value=4.2e+02 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKL 209 (254)
Q Consensus 198 yleeLE~eV~~L 209 (254)
++..+|.+++.|
T Consensus 50 Rl~~lE~~l~~L 61 (106)
T PF10805_consen 50 RLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHhC
Confidence 344444444443
No 357
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.48 E-value=7.7e+02 Score=23.68 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQ 196 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKK 196 (254)
++-|-.-+.+..+.---+|.-|-+
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ 35 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQ 35 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444443344443333
No 358
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.46 E-value=2.5e+02 Score=20.74 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+..||.++...+.+-...+.++.
T Consensus 34 La~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 34 LAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 359
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=20.41 E-value=3.9e+02 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 185 RESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 185 RESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-.+..|+|-.|-. ++-+.+++.|++.+..|+.+++.-..+
T Consensus 113 ~L~eEr~Ry~rLQ--qssD~~lD~Lr~qq~~Lq~qL~~T~RK 152 (179)
T PF13942_consen 113 QLSEERARYQRLQ--QSSDSELDALRQQQQRLQYQLDTTTRK 152 (179)
T ss_pred HHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444 677789999999999999988877654
No 360
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.38 E-value=2.9e+02 Score=21.22 Aligned_cols=16 Identities=13% Similarity=0.472 Sum_probs=9.7
Q ss_pred CCCCCCcccccccccC
Q 025340 66 IFPKQPAMAYATQMPL 81 (254)
Q Consensus 66 ~fpk~~~~~~~~~~~~ 81 (254)
+||..+.|.....+.+
T Consensus 4 Vy~~gA~Vtr~~~v~l 19 (104)
T PF13600_consen 4 VYPDGAQVTREASVSL 19 (104)
T ss_pred EECCceEEEEEEEEEe
Confidence 5666666666555555
No 361
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=20.38 E-value=2.4e+02 Score=25.69 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.+...++.+-.+|..|+.++..|.
T Consensus 33 D~V~~dye~~l~e~~~l~~~i~~L~ 57 (212)
T COG3599 33 DDVIDDYEQLLDENEDLEDEIDELK 57 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444443333
No 362
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.30 E-value=6.3e+02 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+..++.++-.+|+-+++.|.
T Consensus 460 ~kr~e~~~e~~~l~pkL~~l~ 480 (507)
T PF05600_consen 460 EKRQEAQEEQQELEPKLDALV 480 (507)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333334444444444444433
No 363
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.18 E-value=3.6e+02 Score=24.04 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
.+|..++.+|..++++|..++..|...|..
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444333
No 364
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=20.03 E-value=7.2e+02 Score=23.17 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
+..+|-+-+..+-+.+|..++.+-..-++.|+..-..-.++-...-.+..+++++...-+.+.|
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l 231 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVL 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888889999998888888888877776666666677777777776665555554
Done!