Query 025340
Match_columns 254
No_of_seqs 201 out of 808
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 5.3E-15 1.8E-19 105.7 7.1 51 176-226 1-51 (55)
2 2wt7_A Proto-oncogene protein 99.5 6.6E-14 2.3E-18 101.8 9.5 63 175-238 1-63 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.4 1.7E-12 5.8E-17 93.5 9.2 58 176-234 1-58 (61)
4 2dgc_A Protein (GCN4); basic d 99.3 4.8E-12 1.6E-16 92.6 7.3 54 173-226 6-59 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.3 4.3E-12 1.5E-16 91.7 6.9 51 176-226 1-51 (62)
6 1ci6_A Transcription factor AT 99.1 3.2E-10 1.1E-14 82.6 7.8 57 176-233 2-58 (63)
7 1hjb_A Ccaat/enhancer binding 98.9 5.2E-09 1.8E-13 81.2 9.4 69 170-239 9-77 (87)
8 1gu4_A CAAT/enhancer binding p 98.9 4.6E-09 1.6E-13 80.0 7.9 57 170-226 9-65 (78)
9 1gd2_E Transcription factor PA 98.4 1.4E-06 4.7E-11 65.2 8.4 48 178-225 10-57 (70)
10 3a5t_A Transcription factor MA 98.4 4.8E-08 1.7E-12 78.4 -0.1 58 168-225 29-86 (107)
11 2wt7_B Transcription factor MA 98.1 4.2E-05 1.4E-09 59.8 10.7 59 168-226 19-77 (90)
12 2oqq_A Transcription factor HY 96.6 0.0061 2.1E-07 41.7 6.0 31 196-226 2-32 (42)
13 1skn_P DNA-binding domain of S 96.4 0.0013 4.6E-08 51.5 2.4 37 168-204 54-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 95.0 0.13 4.4E-06 37.4 7.7 42 179-220 4-45 (63)
15 2oxj_A Hybrid alpha/beta pepti 94.4 0.068 2.3E-06 35.1 4.6 30 197-226 1-30 (34)
16 1kd8_B GABH BLL, GCN4 acid bas 94.1 0.082 2.8E-06 35.1 4.6 30 197-226 1-30 (36)
17 3m48_A General control protein 93.8 0.074 2.5E-06 34.7 3.9 28 199-226 2-29 (33)
18 3c3f_A Alpha/beta peptide with 93.0 0.17 5.7E-06 33.2 4.6 30 197-226 1-30 (34)
19 1kd8_A GABH AIV, GCN4 acid bas 92.7 0.13 4.5E-06 34.1 3.8 29 198-226 2-30 (36)
20 3c3g_A Alpha/beta peptide with 92.4 0.22 7.6E-06 32.4 4.6 28 199-226 2-29 (33)
21 2bni_A General control protein 91.3 0.27 9.1E-06 32.3 4.1 29 198-226 2-30 (34)
22 1uo4_A General control protein 90.9 0.31 1.1E-05 31.9 4.1 29 198-226 2-30 (34)
23 2wq1_A General control protein 90.9 0.41 1.4E-05 31.2 4.6 28 199-226 2-29 (33)
24 2hy6_A General control protein 90.3 0.38 1.3E-05 31.5 4.1 29 198-226 2-30 (34)
25 2kz5_A Transcription factor NF 88.3 0.04 1.4E-06 43.1 -2.0 30 168-197 58-87 (91)
26 3s9g_A Protein hexim1; cyclin 88.0 3.5 0.00012 32.9 8.9 29 196-224 64-92 (104)
27 2r2v_A GCN4 leucine zipper; co 85.2 1.6 5.3E-05 28.6 4.6 29 198-226 2-30 (34)
28 1am9_A Srebp-1A, protein (ster 85.0 1.4 4.7E-05 32.8 5.0 30 195-224 48-77 (82)
29 1gmj_A ATPase inhibitor; coile 84.7 5.9 0.0002 30.5 8.4 65 161-225 13-79 (84)
30 1nkp_B MAX protein, MYC proto- 84.4 1.7 5.7E-05 32.0 5.1 32 195-226 45-76 (83)
31 2wuj_A Septum site-determining 84.3 0.98 3.4E-05 31.8 3.7 30 197-226 27-56 (57)
32 1hjb_A Ccaat/enhancer binding 82.8 11 0.00036 28.9 9.2 60 167-226 10-72 (87)
33 1p9i_A Cortexillin I/GCN4 hybr 82.2 1.7 5.9E-05 27.4 3.7 27 200-226 2-28 (31)
34 2dfs_A Myosin-5A; myosin-V, in 81.4 6 0.0002 41.6 9.7 28 198-225 1017-1044(1080)
35 1dip_A Delta-sleep-inducing pe 81.4 1.6 5.3E-05 33.3 3.9 22 197-218 22-43 (78)
36 2xdj_A Uncharacterized protein 81.0 16 0.00054 27.6 10.0 43 193-235 23-65 (83)
37 2yy0_A C-MYC-binding protein; 80.3 3.6 0.00012 28.7 5.3 22 204-225 19-40 (53)
38 1nlw_A MAD protein, MAX dimeri 80.0 4 0.00014 30.4 5.8 33 194-226 44-76 (80)
39 1zme_C Proline utilization tra 78.5 1.4 4.9E-05 30.4 2.8 26 196-221 43-68 (70)
40 1deb_A APC protein, adenomatou 78.0 6 0.00021 28.1 5.8 26 199-224 5-30 (54)
41 1fmh_A General control protein 77.1 4.5 0.00015 25.8 4.5 27 199-225 3-29 (33)
42 2oa5_A Hypothetical protein BQ 75.3 1.6 5.3E-05 35.2 2.5 26 197-222 8-33 (110)
43 3hnw_A Uncharacterized protein 74.9 25 0.00084 28.6 9.7 23 201-223 107-129 (138)
44 2oqq_A Transcription factor HY 74.8 6.7 0.00023 26.7 5.1 24 197-220 17-40 (42)
45 2yy0_A C-MYC-binding protein; 74.8 6 0.0002 27.6 5.1 27 199-225 21-47 (53)
46 3ghg_A Fibrinogen alpha chain; 74.7 8.6 0.00029 38.3 8.0 47 191-237 104-150 (562)
47 1jnm_A Proto-oncogene C-JUN; B 74.5 13 0.00043 26.1 6.9 52 174-225 3-57 (62)
48 3oja_B Anopheles plasmodium-re 74.0 23 0.00078 33.1 10.5 28 197-224 537-564 (597)
49 1gu4_A CAAT/enhancer binding p 73.6 24 0.0008 26.4 8.5 66 161-226 3-72 (78)
50 1go4_E MAD1 (mitotic arrest de 72.1 6.1 0.00021 31.2 5.1 30 197-226 12-41 (100)
51 3oja_B Anopheles plasmodium-re 72.1 19 0.00065 33.6 9.5 28 199-226 532-559 (597)
52 1nkp_A C-MYC, MYC proto-oncoge 71.6 8.2 0.00028 29.0 5.6 33 194-226 49-81 (88)
53 3nmd_A CGMP dependent protein 70.9 4.8 0.00016 30.1 4.1 32 193-224 36-67 (72)
54 2dgc_A Protein (GCN4); basic d 70.2 13 0.00045 26.5 6.2 52 170-221 7-61 (63)
55 3oja_A Leucine-rich immune mol 69.6 24 0.00082 32.4 9.4 36 191-226 429-464 (487)
56 3he5_A Synzip1; heterodimeric 68.6 5.9 0.0002 27.2 3.8 23 198-220 4-26 (49)
57 1hlo_A Protein (transcription 68.0 4.5 0.00015 29.6 3.4 24 196-219 56-79 (80)
58 3o0z_A RHO-associated protein 67.8 56 0.0019 27.8 10.6 60 175-235 68-127 (168)
59 1ci6_A Transcription factor AT 67.0 21 0.00073 25.2 6.7 29 198-226 31-59 (63)
60 1nkp_B MAX protein, MYC proto- 66.7 5.1 0.00017 29.3 3.5 19 207-225 50-68 (83)
61 3ljm_A Coil Ser L9C; de novo d 64.1 12 0.00042 23.5 4.3 25 200-224 4-28 (31)
62 3mq9_A Bone marrow stromal ant 63.5 57 0.002 29.7 10.7 32 199-230 431-462 (471)
63 2er8_A Regulatory protein Leu3 63.3 3.9 0.00013 28.4 2.2 22 196-217 48-69 (72)
64 1a93_B MAX protein, coiled coi 62.5 12 0.00042 24.4 4.2 24 200-223 10-33 (34)
65 3he4_B Synzip5; heterodimeric 61.9 17 0.00057 24.7 5.0 29 196-224 9-37 (46)
66 1gd2_E Transcription factor PA 61.2 46 0.0016 24.4 7.9 30 197-226 36-65 (70)
67 3mq7_A Bone marrow stromal ant 60.1 31 0.001 28.1 7.1 30 196-225 70-99 (121)
68 1zxa_A CGMP-dependent protein 59.4 19 0.00064 26.5 5.3 33 193-225 21-53 (67)
69 1uii_A Geminin; human, DNA rep 58.9 22 0.00075 27.2 5.8 27 200-226 49-75 (83)
70 3oja_A Leucine-rich immune mol 58.4 84 0.0029 28.8 10.8 49 181-229 426-474 (487)
71 1nkp_A C-MYC, MYC proto-oncoge 57.4 16 0.00053 27.5 4.8 19 206-224 54-72 (88)
72 2lz1_A Nuclear factor erythroi 55.7 0.22 7.6E-06 38.9 -5.9 30 168-197 58-87 (90)
73 2jee_A YIIU; FTSZ, septum, coi 55.1 41 0.0014 25.5 6.7 21 202-222 25-45 (81)
74 3vmx_A Voltage-gated hydrogen 53.7 39 0.0013 23.5 5.8 29 197-225 11-39 (48)
75 2jee_A YIIU; FTSZ, septum, coi 53.6 43 0.0015 25.4 6.6 20 196-215 26-45 (81)
76 3a2a_A Voltage-gated hydrogen 53.0 25 0.00085 25.3 4.9 30 197-226 18-47 (58)
77 3w03_C DNA repair protein XRCC 52.5 22 0.00075 30.6 5.5 25 200-224 155-179 (184)
78 2wvr_A Geminin; DNA replicatio 52.4 43 0.0015 29.5 7.4 25 197-221 122-146 (209)
79 3lvh_D LCB, clathrin light cha 52.2 54 0.0019 28.8 7.9 41 168-208 97-137 (205)
80 4etp_A Kinesin-like protein KA 51.9 34 0.0012 32.0 7.1 22 200-221 20-41 (403)
81 1wt6_A Myotonin-protein kinase 51.7 77 0.0027 24.1 8.1 45 182-226 23-67 (81)
82 2zvf_A Alanyl-tRNA synthetase; 51.5 24 0.00082 28.1 5.3 36 200-235 28-63 (171)
83 3hnw_A Uncharacterized protein 49.6 57 0.0019 26.4 7.3 25 199-223 77-101 (138)
84 3ra3_B P2F; coiled coil domain 49.4 12 0.0004 23.2 2.3 19 206-224 2-20 (28)
85 2akf_A Coronin-1A; coiled coil 49.3 36 0.0012 21.7 4.7 26 201-226 3-28 (32)
86 2wt7_A Proto-oncogene protein 49.0 65 0.0022 22.5 9.1 53 174-226 4-59 (63)
87 1nlw_A MAD protein, MAX dimeri 49.0 32 0.0011 25.4 5.2 18 207-224 50-67 (80)
88 3v86_A De novo design helix; c 48.1 31 0.0011 21.1 4.1 22 201-222 4-25 (27)
89 2w6a_A ARF GTPase-activating p 48.1 77 0.0026 23.1 7.0 37 200-236 23-59 (63)
90 2ve7_C Kinetochore protein NUF 48.1 19 0.00063 31.8 4.4 56 172-227 116-178 (250)
91 3a2a_A Voltage-gated hydrogen 47.8 58 0.002 23.4 6.1 34 203-236 10-45 (58)
92 2zqm_A Prefoldin beta subunit 44.6 82 0.0028 23.4 7.1 22 203-224 83-104 (117)
93 3w03_C DNA repair protein XRCC 44.5 56 0.0019 28.1 6.7 40 195-235 143-182 (184)
94 3haj_A Human pacsin2 F-BAR; pa 43.3 1E+02 0.0034 28.9 8.9 64 172-235 185-248 (486)
95 1g6u_A Domain swapped dimer; d 43.0 43 0.0015 22.8 4.6 21 205-225 21-41 (48)
96 4dzn_A Coiled-coil peptide CC- 42.3 57 0.002 20.7 4.8 25 200-224 5-29 (33)
97 3pjs_K KCSA, voltage-gated pot 41.6 48 0.0016 26.7 5.7 27 194-220 135-161 (166)
98 3s9g_A Protein hexim1; cyclin 41.1 86 0.0029 24.9 6.7 18 201-218 41-58 (104)
99 1wle_A Seryl-tRNA synthetase; 41.0 1.4E+02 0.0048 28.9 9.7 31 198-228 117-147 (501)
100 1uii_A Geminin; human, DNA rep 40.7 45 0.0015 25.5 5.0 28 196-223 52-79 (83)
101 1fxk_A Prefoldin; archaeal pro 40.6 1.1E+02 0.0036 22.5 7.2 20 204-223 79-98 (107)
102 2dfs_A Myosin-5A; myosin-V, in 39.9 1.5E+02 0.005 31.3 10.3 29 197-225 984-1012(1080)
103 3nmd_A CGMP dependent protein 39.7 89 0.003 23.2 6.3 33 194-226 30-62 (72)
104 1t2k_D Cyclic-AMP-dependent tr 39.3 92 0.0031 21.4 9.0 29 197-225 29-57 (61)
105 3aco_A Pacsin2, protein kinase 38.8 1.9E+02 0.0065 25.4 9.6 55 172-226 192-246 (350)
106 1ykh_B RNA polymerase II holoe 38.6 70 0.0024 25.6 6.1 35 201-236 89-123 (132)
107 1wlq_A Geminin; coiled-coil; 2 38.4 1.3E+02 0.0045 22.9 7.3 19 199-217 47-65 (83)
108 4ath_A MITF, microphthalmia-as 38.2 56 0.0019 24.9 5.1 29 197-225 49-77 (83)
109 2j5u_A MREC protein; bacterial 37.9 16 0.00054 32.1 2.3 25 201-225 23-47 (255)
110 1dip_A Delta-sleep-inducing pe 37.8 30 0.001 26.2 3.5 28 198-225 16-43 (78)
111 2zqm_A Prefoldin beta subunit 37.1 87 0.003 23.3 6.2 25 200-224 73-97 (117)
112 1yke_B RNA polymerase II holoe 37.0 72 0.0025 26.2 6.1 35 201-236 89-123 (151)
113 3q4f_C DNA repair protein XRCC 37.0 29 0.00099 30.1 3.8 22 198-219 162-183 (186)
114 4ati_A MITF, microphthalmia-as 37.0 21 0.00071 28.2 2.7 41 172-212 32-89 (118)
115 3vkg_A Dynein heavy chain, cyt 36.8 1.4E+02 0.0048 35.5 10.3 37 188-224 2026-2062(3245)
116 1kd8_A GABH AIV, GCN4 acid bas 36.4 63 0.0021 21.3 4.4 24 198-221 9-32 (36)
117 3u06_A Protein claret segregat 36.3 77 0.0026 29.7 6.9 23 200-222 20-42 (412)
118 1gk7_A Vimentin; intermediate 35.0 28 0.00096 22.8 2.6 19 204-222 20-38 (39)
119 1go4_E MAD1 (mitotic arrest de 34.9 51 0.0018 25.8 4.6 22 200-221 22-43 (100)
120 1joc_A EEA1, early endosomal a 34.8 1.5E+02 0.005 23.3 7.4 24 200-223 14-37 (125)
121 2pnv_A Small conductance calci 34.4 39 0.0013 22.8 3.3 21 204-224 16-36 (43)
122 1ses_A Seryl-tRNA synthetase; 34.2 63 0.0021 30.3 5.9 32 197-228 64-95 (421)
123 2zxx_A Geminin; coiled-coil, c 34.1 1.3E+02 0.0043 22.8 6.5 25 198-222 42-66 (79)
124 1deq_A Fibrinogen (alpha chain 34.0 1.3E+02 0.0045 28.7 8.0 42 196-237 112-153 (390)
125 3ra3_A P1C; coiled coil domain 33.9 39 0.0013 20.8 2.9 16 209-224 5-20 (28)
126 2aze_A Transcription factor DP 33.8 88 0.003 26.3 6.2 17 193-209 22-38 (155)
127 3m9b_A Proteasome-associated A 33.6 53 0.0018 29.6 5.1 30 196-225 60-89 (251)
128 2dq0_A Seryl-tRNA synthetase; 33.5 92 0.0032 29.5 7.0 32 197-228 69-100 (455)
129 2wg5_A General control protein 33.5 32 0.0011 26.6 3.2 24 201-224 11-34 (109)
130 2xv5_A Lamin-A/C; structural p 32.4 1.5E+02 0.005 21.7 7.2 37 190-226 5-41 (74)
131 3vem_A Helicase protein MOM1; 32.4 2E+02 0.0067 23.2 9.9 29 193-221 57-85 (115)
132 3qne_A Seryl-tRNA synthetase, 32.2 1.1E+02 0.0039 29.6 7.5 32 198-229 72-103 (485)
133 2wvr_A Geminin; DNA replicatio 32.0 59 0.002 28.7 5.0 42 199-240 117-160 (209)
134 1p9i_A Cortexillin I/GCN4 hybr 31.9 76 0.0026 19.9 4.1 24 197-220 6-29 (31)
135 1hwt_C Protein (heme activator 31.9 18 0.00061 25.4 1.4 22 195-216 56-77 (81)
136 1m1j_A Fibrinogen alpha subuni 31.7 2.4E+02 0.0083 27.7 9.6 43 194-236 108-150 (491)
137 2ve7_A Kinetochore protein HEC 31.5 80 0.0027 28.5 6.0 28 197-224 185-212 (315)
138 2l5g_A GPS2 protein, G protein 31.5 53 0.0018 21.8 3.5 23 209-232 13-35 (38)
139 3vmx_A Voltage-gated hydrogen 31.3 1.3E+02 0.0045 20.8 7.2 23 203-225 3-25 (48)
140 2z5i_A TM, general control pro 31.3 1.3E+02 0.0043 20.7 6.3 27 187-213 9-35 (52)
141 2zxx_A Geminin; coiled-coil, c 30.5 65 0.0022 24.3 4.3 27 200-226 37-63 (79)
142 1lwu_A Fibrinogen alpha-1 chai 30.4 75 0.0026 25.8 5.0 44 195-238 20-63 (119)
143 2wt7_B Transcription factor MA 30.1 90 0.0031 24.0 5.2 36 191-226 31-70 (90)
144 4e61_A Protein BIM1; EB1-like 30.0 1.6E+02 0.0056 23.2 6.8 21 201-221 29-49 (106)
145 3mud_A DNA repair protein XRCC 29.9 1.1E+02 0.0038 26.1 6.3 34 188-221 133-166 (175)
146 3eff_K Voltage-gated potassium 29.4 93 0.0032 23.9 5.3 19 199-217 113-131 (139)
147 3mq7_A Bone marrow stromal ant 29.4 2.1E+02 0.007 23.3 7.4 22 205-226 72-93 (121)
148 2lw1_A ABC transporter ATP-bin 28.9 85 0.0029 23.1 4.8 22 199-220 24-45 (89)
149 3coq_A Regulatory protein GAL4 28.7 54 0.0019 23.1 3.6 21 197-217 45-65 (89)
150 2wuj_A Septum site-determining 28.6 36 0.0012 23.6 2.5 22 198-219 35-56 (57)
151 3bas_A Myosin heavy chain, str 28.5 1.8E+02 0.0062 21.5 9.2 50 172-225 14-63 (89)
152 3m91_A Proteasome-associated A 28.4 1.5E+02 0.0051 20.5 6.6 24 201-224 13-36 (51)
153 3ni0_A Bone marrow stromal ant 28.4 1.8E+02 0.0062 22.8 6.7 32 193-224 56-87 (99)
154 3efg_A Protein SLYX homolog; x 28.3 1.4E+02 0.0046 22.0 5.8 18 198-215 15-32 (78)
155 2j5u_A MREC protein; bacterial 28.2 56 0.0019 28.5 4.3 16 203-218 42-57 (255)
156 3he4_A Synzip6; heterodimeric 28.1 1.3E+02 0.0043 21.1 5.2 27 200-226 20-46 (56)
157 1t6f_A Geminin; coiled-coil, c 27.7 85 0.0029 20.7 4.0 20 204-223 14-33 (37)
158 3m9b_A Proteasome-associated A 27.7 69 0.0024 28.8 4.8 30 197-226 54-83 (251)
159 2v71_A Nuclear distribution pr 27.5 1.6E+02 0.0054 25.3 6.8 41 197-237 49-89 (189)
160 1lwu_C Fibrinogen gamma chain; 27.4 1.9E+02 0.0066 26.5 7.8 29 197-225 26-54 (323)
161 2x3v_A Syndapin I, protein kin 27.0 3.1E+02 0.011 23.7 10.7 54 172-225 183-236 (337)
162 3twe_A Alpha4H; unknown functi 26.7 1.1E+02 0.0036 18.7 4.0 20 200-219 4-23 (27)
163 3kin_B Kinesin heavy chain; mo 26.5 1.1E+02 0.0036 23.9 5.2 7 126-132 46-52 (117)
164 3plt_A Sphingolipid long chain 26.0 1.2E+02 0.0041 27.0 6.0 59 178-239 95-170 (234)
165 4abm_A Charged multivesicular 26.0 1.5E+02 0.0053 21.8 5.7 23 181-203 40-62 (79)
166 1ik9_A DNA repair protein XRCC 25.5 2.6E+02 0.0088 24.1 7.9 33 194-226 136-168 (213)
167 1fxk_A Prefoldin; archaeal pro 25.3 1.5E+02 0.0052 21.6 5.6 26 199-224 67-92 (107)
168 1jcd_A Major outer membrane li 24.9 1.8E+02 0.006 20.2 5.5 29 198-226 5-33 (52)
169 1pyi_A Protein (pyrimidine pat 24.7 56 0.0019 23.5 3.1 19 197-215 48-66 (96)
170 3mud_A DNA repair protein XRCC 24.6 1.9E+02 0.0064 24.7 6.7 34 199-232 137-170 (175)
171 1kd8_B GABH BLL, GCN4 acid bas 24.5 1.5E+02 0.005 19.5 4.6 18 207-224 4-21 (36)
172 1rtm_1 Mannose-binding protein 24.1 84 0.0029 23.8 4.1 20 199-218 6-25 (149)
173 3tnu_A Keratin, type I cytoske 24.0 1.8E+02 0.0062 22.7 6.2 21 204-224 84-104 (131)
174 3tnu_B Keratin, type II cytosk 24.0 1.8E+02 0.0062 22.6 6.2 19 205-223 83-101 (129)
175 3rvy_A ION transport protein; 23.7 17 0.00057 31.1 0.0 24 198-221 257-280 (285)
176 1gmj_A ATPase inhibitor; coile 23.6 2.5E+02 0.0084 21.4 8.6 23 181-203 21-46 (84)
177 4dzo_A Mitotic spindle assembl 23.3 1.6E+02 0.0054 23.4 5.7 25 198-222 5-29 (123)
178 1fzc_A Fibrin; blood coagulati 23.1 60 0.002 25.1 3.0 39 200-238 3-41 (87)
179 1l8d_A DNA double-strand break 23.0 2.1E+02 0.0073 21.1 6.2 26 200-225 74-99 (112)
180 1wlq_A Geminin; coiled-coil; 2 22.9 1.1E+02 0.0038 23.4 4.4 28 200-227 41-68 (83)
181 3eff_K Voltage-gated potassium 22.3 1.4E+02 0.0048 22.9 5.1 19 207-225 114-132 (139)
182 4etp_A Kinesin-like protein KA 22.3 3.6E+02 0.012 24.9 8.8 29 197-225 10-38 (403)
183 2w6b_A RHO guanine nucleotide 21.6 1.1E+02 0.0036 21.9 3.8 22 201-222 14-35 (56)
184 1fxk_C Protein (prefoldin); ar 21.5 2.2E+02 0.0076 21.7 6.2 25 201-225 99-123 (133)
185 3lss_A Seryl-tRNA synthetase; 21.4 3.3E+02 0.011 26.3 8.5 26 203-228 109-135 (484)
186 3iv1_A Tumor susceptibility ge 21.2 2.6E+02 0.0091 20.9 9.3 23 203-225 45-67 (78)
187 3e98_A GAF domain of unknown f 21.1 1.6E+02 0.0056 25.6 5.8 27 199-225 81-110 (252)
188 1s1c_X RHO-associated, coiled- 21.0 2.6E+02 0.0087 20.7 6.1 10 228-237 59-68 (71)
189 1am9_A Srebp-1A, protein (ster 21.0 2.4E+02 0.0083 20.4 8.5 22 206-227 52-73 (82)
190 1g6u_A Domain swapped dimer; d 21.0 1.5E+02 0.0052 20.1 4.3 27 197-223 20-46 (48)
191 3n5l_A Binding protein compone 20.9 2.3E+02 0.008 24.3 6.8 39 180-218 261-303 (310)
192 2l5g_B Putative uncharacterize 20.4 2.1E+02 0.0071 19.4 5.0 20 205-224 17-36 (42)
193 1wt6_A Myotonin-protein kinase 20.2 1.5E+02 0.0051 22.6 4.6 37 184-223 14-50 (81)
194 1r4g_A RNA polymerase alpha su 20.1 61 0.0021 22.8 2.3 16 189-204 15-30 (53)
195 2inr_A DNA topoisomerase 4 sub 20.1 1.4E+02 0.0049 29.2 5.7 41 205-249 455-504 (514)
196 3na7_A HP0958; flagellar bioge 20.0 4.1E+02 0.014 22.6 9.7 21 204-224 97-117 (256)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.56 E-value=5.3e-15 Score=105.70 Aligned_cols=51 Identities=35% Similarity=0.591 Sum_probs=48.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
||++||++||+||++||.||++|+++||.+|..|+.||..|..+++.|.+.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999988753
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.51 E-value=6.6e-14 Score=101.80 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
|||++|+++||+||++||.||++|+++||.+|+.|+.+|..|+.++..|.+. ..+|..++..|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e-~~~Lk~~l~~H 63 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE-KEKLEFILAAH 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence 5799999999999999999999999999999999999999999999998864 77777776554
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.39 E-value=1.7e-12 Score=93.46 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=51.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEM 234 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~ 234 (254)
||++|+++||+||++||.|||+|+++||.++..|+.+|..|..++..|.+. ..+|...
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e-~~~Lk~~ 58 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE-VAQLKQL 58 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 588999999999999999999999999999999999999999999999865 4444433
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.30 E-value=4.8e-12 Score=92.55 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 173 VVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 173 ~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+++..++..+||+||++||.||++|+.+||.+|+.|+.+|..|..+++.|.+.
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555679999999999999999999999999999999999999998764
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.30 E-value=4.3e-12 Score=91.71 Aligned_cols=51 Identities=33% Similarity=0.482 Sum_probs=47.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|+++|..+||+||++||.||++|+++||.+|+.|+.+|.+|..++..|.+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999865
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.08 E-value=3.2e-10 Score=82.61 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=46.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 176 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLE 233 (254)
Q Consensus 176 RRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E 233 (254)
|+.+++.+||.+|+|||.||++++++|+.+++.|+.+|.+|+.+++.|..+ ...|.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E-~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE-IQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 678889999999999999999999999999999999999999999999865 444443
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.92 E-value=5.2e-09 Score=81.19 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQ 239 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~ 239 (254)
+|+++++-..|..+|.++|++||.++++...+++.++..|+.||..|+.+++.|..+ ...|.+.+....
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E-~~~Lr~ll~~~p 77 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE-LSTLRNLFKQLP 77 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCc
Confidence 455556666667999999999999999999999999999999999999999999865 556666665543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.89 E-value=4.6e-09 Score=79.98 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+|+.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.+++.|..+
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555557999999999999999999999999999999999999999999865
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.39 E-value=1.4e-06 Score=65.18 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=42.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 178 QRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 178 qRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+|...||+|++..|.||++|+.+||.+|..|+.++..|..++..|..
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999998888777777766664
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.36 E-value=4.8e-08 Score=78.40 Aligned_cols=58 Identities=31% Similarity=0.401 Sum_probs=47.8
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..+...-|.+||..|||++|+.||.||.+.+++||.++..|..+.+.|+.+...|..
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667899999999999999999999999999998887777777666666666654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.06 E-value=4.2e-05 Score=59.77 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=50.4
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..+....|..||-.|||..|+.||.||-....+||.++..|..+.+.|+.++..+...
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667888899999999999999999999999999999888888888888877754
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0061 Score=41.73 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|+|+.+||.++.+|+..|.+|..++..|..+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999864
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.43 E-value=0.0013 Score=51.53 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEA 204 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~ 204 (254)
+.......|..||..|||.+|++||+||.+.+++|+.
T Consensus 54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4445666889999999999999999999999888764
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.96 E-value=0.13 Score=37.35 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 179 RRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 179 RRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
++..|||.++++||+|=|..++-...-...-.+||+.|+--+
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~ 45 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLL 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 345899999999999999888777666666778898887543
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.36 E-value=0.068 Score=35.06 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++..||.+|+.|-.+|.+|..+++.|++.
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 357899999999999999999999998864
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.08 E-value=0.082 Score=35.06 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++..||.+|++|..+|.+|..+++.|.+.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357899999999999999999999999875
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.79 E-value=0.074 Score=34.70 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..||.+|+.|-.+|.+|..+++.|.+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5689999999999999999999998864
No 18
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=92.96 E-value=0.17 Score=33.17 Aligned_cols=30 Identities=3% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++..||.+|+.|-.+|.+|..+++.|++.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357899999999999999999999998864
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=92.65 E-value=0.13 Score=34.07 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..||.+|+.|..+|..|..++..|++.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999875
No 20
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=92.41 E-value=0.22 Score=32.42 Aligned_cols=28 Identities=4% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..||.+|+.|-.+|.+|..+++.|++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6789999999999999999999998874
No 21
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=91.34 E-value=0.27 Score=32.26 Aligned_cols=29 Identities=3% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..||.+|+.|-.+|.+|..+++.|++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 56789999999999999999999998864
No 22
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=90.87 E-value=0.31 Score=31.91 Aligned_cols=29 Identities=3% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..||.+|+.|-.+|.+|..++..|++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999998864
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.86 E-value=0.41 Score=31.17 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..||.+|++|-.+|.+|..+++.|.+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6789999999999999999999988864
No 24
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=90.33 E-value=0.38 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..||.+|++|-.+|.+|..+++.|.+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999998864
No 25
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=88.28 E-value=0.04 Score=43.12 Aligned_cols=30 Identities=30% Similarity=0.271 Sum_probs=24.8
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQA 197 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKa 197 (254)
+......-|..||.-|||++|++||+||.+
T Consensus 58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444556678899999999999999999865
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.04 E-value=3.5 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
-..+.+|+.+|+.|+.||..|+.+.+...
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46778899999999999999988776554
No 27
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=85.21 E-value=1.6 Score=28.64 Aligned_cols=29 Identities=0% Similarity=0.024 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++..||.+|+.|-.++..|..++..|.+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46789999999999999999999888764
No 28
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=85.04 E-value=1.4 Score=32.80 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
--+|+..|+.++..|++|+..|+.++++..
T Consensus 48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 347889999999999999999988776654
No 29
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=84.70 E-value=5.9 Score=30.46 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 161 LRGRRFNGNVEKVVERRQRRMIKNRESAARSRARKQ--AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 161 ~rgRk~~~~~e~~eeRRqRRmiKNRESA~RSR~RKK--ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..|...+..-+.+.-+..+-++.++.++...-|++ +.++.-..+++.|+++.+.+++.+.+|..
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555555554455555555555555555554 33444445666666666666666666653
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.39 E-value=1.7 Score=32.03 Aligned_cols=32 Identities=6% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
--+|+..|+.++..|+.+.++|+.++..|...
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999988888888888888754
No 31
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=84.31 E-value=0.98 Score=31.75 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++++.+...++.|..||.+|+.+++.|+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888999999999999999999888753
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.82 E-value=11 Score=28.90 Aligned_cols=60 Identities=25% Similarity=0.400 Sum_probs=44.1
Q ss_pred CCcchhHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 167 NGNVEKVVERRQRRMIKNRESAARSRAR---KQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 167 ~~~~e~~eeRRqRRmiKNRESA~RSR~R---KKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+...++--+||.+-=+.=|.|-...|.| -...+++||.+...|+.+.+.|+.++..|.+.
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777666666655555544 44567999999999999999999999999875
No 33
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=82.17 E-value=1.7 Score=27.45 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.|..-+..|+.||..|+.++++|..+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889999999999888753
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.42 E-value=6 Score=41.64 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..++|+.+|..|++||..|+.++++|++
T Consensus 1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1017 YKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888873
No 35
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.35 E-value=1.6 Score=33.26 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ 218 (254)
+.+.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666554
No 36
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.02 E-value=16 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
--=...++.|..+|..|.-.++++..+++.+.+++++...+-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888889999999999999999999988887766543
No 37
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.29 E-value=3.6 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+++.|+.||++|+.++++|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666654
No 38
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=80.03 E-value=4 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-.+|+..|+.+...|..|.+.|++++++|..+
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999888764
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=78.51 E-value=1.4 Score=30.39 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
..|++.||.++..|+.....|...++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999988888877553
No 40
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=78.03 E-value=6 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+.|-..|+.|+.||..|+++++.-.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 46788899999999999999987654
No 41
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=77.06 E-value=4.5 Score=25.85 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..||++|.+-+.||-.|..++..|+-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567999999999999999999888764
No 42
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=75.34 E-value=1.6 Score=35.22 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.-+++|++++.+|+-||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999863
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.91 E-value=25 Score=28.61 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL 223 (254)
+++.+++.|++++.+|..++..|
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.80 E-value=6.7 Score=26.73 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql 220 (254)
....+||.++..|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345788999999999998887654
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.79 E-value=6 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.|..++++|+.++..|.+++++|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666655554
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.67 E-value=8.6 Score=38.25 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
....+.+|.++||.++..|+.+...-...+..|+....+|+.++.++
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788898888888888777788888887777777766543
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.48 E-value=13 Score=26.08 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 174 VERRQRRMIKNRESAARSRARK---QAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 174 eeRRqRRmiKNRESA~RSR~RK---KayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.||.+-.+.-+.|-.+-..+- ...+++|+.+...|..+...|..++..|..
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443 345677888888888888888888877764
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.98 E-value=23 Score=33.13 Aligned_cols=28 Identities=32% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.++.+|.+++.++...++.++++.++.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3444444555555554444444444444
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.63 E-value=24 Score=26.39 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCCCC-CCcchhHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 161 LRGRRF-NGNVEKVVERRQRRMIKNRESAARSRAR---KQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 161 ~rgRk~-~~~~e~~eeRRqRRmiKNRESA~RSR~R---KKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+++++. +...++--+||.+-=+.=|-|-...|.| -+..+++|+.+...|+.+...|..++..|.+.
T Consensus 3 ~~~kk~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 3 SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccCCcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 3444555566777666666665555544 45567899999999999999999999998853
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=72.08 E-value=6.1 Score=31.17 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.+..|..+++.|+.||..|+++++.|+.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999888754
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.07 E-value=19 Score=33.65 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
++++.++.+.|++|..+|++++++.++.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 3444444455555555555555554443
No 52
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.62 E-value=8.2 Score=29.03 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+--+|+..|+.+...|..+.+.|+++...|..+
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999988888777777777777777654
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.86 E-value=4.8 Score=30.14 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.|.+.+.+||.++.+.+++..+|+.++..+.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666788888888888888888888877654
No 54
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=70.24 E-value=13 Score=26.48 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 170 VEKVVERRQRRMIKNRESAARSRARKQ---AYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 170 ~e~~eeRRqRRmiKNRESA~RSR~RKK---ayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.|+.+.||.+-.+.-|-|-.+-..+=. ..++.|+.+...|..+...|+.++.
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777777666655543 4557788888889999988887664
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.59 E-value=24 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 191 SRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 191 SR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-|.|.+++++....+.++|++||++|++.+.++...
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 445556666666777778888888888877777654
No 56
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.58 E-value=5.9 Score=27.22 Aligned_cols=23 Identities=52% Similarity=0.705 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql 220 (254)
.+..||.+|..|+.||+.|+++.
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35678999999999999998764
No 57
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.96 E-value=4.5 Score=29.57 Aligned_cols=24 Identities=8% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~q 219 (254)
-+|+..|+.++..|+.+++.|+++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666666666666666665543
No 58
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.84 E-value=56 Score=27.79 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 175 ERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 175 eRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
++....+..-=+.=++.|.+-.+.+.+|+.++..|..|.+.++..+..+... +.+|-|.+
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e-~r~L~Ekl 127 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE-RKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3344444444455567777788888888888888888888887777666543 44454444
No 59
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.96 E-value=21 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+++|+.+...|+.+...|+.++..|.+.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776543
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=66.73 E-value=5.1 Score=29.35 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMME 225 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~e 225 (254)
..|+.++..|..++++|..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666655555553
No 61
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=64.11 E-value=12 Score=23.53 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.||++...|++....|.++++.|+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887777777777664
No 62
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.50 E-value=57 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQ 230 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~q 230 (254)
.+.||+++.+-++..++|..++++|..+.+++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666554443
No 63
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=63.26 E-value=3.9 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk 217 (254)
+.|+++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788889998888887766554
No 64
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.48 E-value=12 Score=24.38 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
......+++|+..|..|..++..|
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345566777777777777766544
No 65
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=61.95 E-value=17 Score=24.72 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|.|+++||.+..+|+.-.+.|+-.-.+|+
T Consensus 9 knyiqeleernaelknlkehlkfakaele 37 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 56888888887777766666665544444
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.17 E-value=46 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+.+||.....|..||..|+.++..|..+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999865
No 67
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=60.05 E-value=31 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
++.+++|+.|+..|..+......+++.|..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344777777777777776666666666664
No 68
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=59.41 E-value=19 Score=26.53 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..|.+.+.+||..+..=..|+.+|+.++..+..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999999999999988877765
No 69
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=58.93 E-value=22 Score=27.25 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..|..+++.|++|+..|+.++++|++.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777666653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.40 E-value=84 Score=28.78 Aligned_cols=49 Identities=20% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 181 MIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 181 miKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
+++-|+-+.+-=+..++.++.|+++-+.|+.+..++..++++..++.+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 3334444555556666666666666667777777776666666655443
No 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.45 E-value=16 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 206 VAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 206 V~~Le~EN~eLk~ql~eL~ 224 (254)
+..|+.++..|..+.+.|.
T Consensus 54 I~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 72
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=55.67 E-value=0.22 Score=38.91 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=23.0
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQA 197 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKa 197 (254)
+......-+..||.-|||.+|++||+||..
T Consensus 58 t~~Ql~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 58 NEAQLALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp CHHHHHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 333444567788899999999999998853
No 73
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.06 E-value=41 Score=25.52 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 202 LEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 202 LE~eV~~Le~EN~eLk~ql~e 222 (254)
|..+++.|+++|..|..+.++
T Consensus 25 LqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 74
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.71 E-value=39 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+-.+.|-.+|.+|+..+.++..+++.|..
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33344455555555555555555555443
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.63 E-value=43 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEE 215 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~e 215 (254)
+..+++|..+...|..++.+
T Consensus 26 qmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566655555555555
No 76
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=52.96 E-value=25 Score=25.30 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+.-..|-.+|.+|+..+.+...+++.|...
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777777666666666654
No 77
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=52.54 E-value=22 Score=30.61 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+|..++.+|+++|+.|+.+.....
T Consensus 155 ~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 155 AENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554443
No 78
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=52.40 E-value=43 Score=29.52 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
..++.|+.++..|++||.+|+.-.+
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655333
No 79
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=52.24 E-value=54 Score=28.81 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=29.6
Q ss_pred CcchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 168 GNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAK 208 (254)
Q Consensus 168 ~~~e~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~ 208 (254)
...|...++|.++..+--+-...|+++|.+..+.-.++++.
T Consensus 97 eEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLdd 137 (205)
T 3lvh_D 97 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137 (205)
T ss_dssp BSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777888888888887777776654
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.95 E-value=34 Score=31.97 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.+|+.+++.++.++.+|..++.
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 81
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.71 E-value=77 Score=24.13 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 182 IKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 182 iKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
|+.+.+-++-=.+-+.-...++.++.+.+..|.+|..+++.|+++
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555566667778888888888887777777654
No 82
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=51.52 E-value=24 Score=28.14 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
++|..+++.|.+|+.+|+++++.|.++......+.+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l 63 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADIL 63 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999999888876544433333
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.57 E-value=57 Score=26.43 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
.+.|+.+++.+++|...|+.++..+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 84
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.38 E-value=12 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 206 VAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 206 V~~Le~EN~eLk~ql~eL~ 224 (254)
+..|+..|..|+.++..|+
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 3456667777777766665
No 85
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.32 E-value=36 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.||+++..|..-..+|.+++..|++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888765
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.04 E-value=65 Score=22.49 Aligned_cols=53 Identities=28% Similarity=0.318 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 174 VERRQRRMIKNRESAARSRARK---QAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 174 eeRRqRRmiKNRESA~RSR~RK---KayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..++++-.+.-+.+-.+-..+- ...++.|+.+...|..+...|..++..|...
T Consensus 4 ~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 4 RIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454555555544444333 3456778888888888888888888887754
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.97 E-value=32 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMM 224 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~ 224 (254)
..|+.++..|..+.+.|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554444
No 88
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=48.08 E-value=31 Score=21.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~e 222 (254)
.|..+|-+|+-|...|+.++..
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 4445555555555555554443
No 89
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.07 E-value=77 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
..-|+++.+|.+-|..|..++..+..+...---|+.+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 3446667777777777766666655543322334443
No 90
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=48.06 E-value=19 Score=31.81 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKN-------RESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 172 ~~eeRRqRRmiKN-------RESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
+.+.+|.+|.++- ||+...-=.......+++..++++|.+||.+++.+++.|+.+.
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777443 4433333333344455666677778888888888777776553
No 91
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.81 E-value=58 Score=23.40 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Q 025340 203 EAEVAKLKEENEELRKKQDEMMEM--QKNQVLEMMN 236 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~e~--qk~ql~E~~~ 236 (254)
|.++..|++.|..|-.++.+|+.- ++.|-+|.++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888877532 3344444443
No 92
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.61 E-value=82 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.+++.|+.....+..+++++.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 93
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=44.49 E-value=56 Score=28.07 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
-+++++.+=..+..|+.+|..|.++.+.|... -++.++.+
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E-~n~~l~ql 182 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRD-WNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 45688999999999999999999999999865 44555444
No 94
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=43.30 E-value=1e+02 Score=28.92 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMM 235 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~ 235 (254)
+..+|.+.+..+-+..|..++..-+..+..++..-....++-..+-..+.+|++.....+.+.+
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L 248 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVL 248 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666665555555555554444555555555556666555444443333
No 95
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.00 E-value=43 Score=22.85 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~e 225 (254)
++..|+.|...|.+++..|.+
T Consensus 21 elaaleselqalekklaalks 41 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 96
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.28 E-value=57 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..|..++..|++|...|+-++..|.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665555554
No 97
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=41.59 E-value=48 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+.++..+.++.++++|.++.++|++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665544
No 98
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.06 E-value=86 Score=24.89 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRK 218 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ 218 (254)
+||.+++.|++||..|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655554
No 99
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.95 E-value=1.4e+02 Score=28.86 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
..++|-.++..|+++..+|..++.+++++..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777666666665533
No 100
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.66 E-value=45 Score=25.52 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
...++.|+.++..|+++|.+|+.-.+..
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777644443
No 101
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.63 E-value=1.1e+02 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL 223 (254)
.+++.|+.....+..+++++
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 102
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.87 E-value=1.5e+02 Score=31.29 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+..|+.+++.|+++..++.++.+.+++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544443
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.68 E-value=89 Score=23.23 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+|-+.+...+..++.|+.+..+...++.+|...
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666543
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.25 E-value=92 Score=21.41 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
..++.|+.+...|..+...|+.++..|..
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888888887764
No 105
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=38.84 E-value=1.9e+02 Score=25.40 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+..+|.+.++.+-+..|..++..-+..+..+...-...+++--.+-..+.+|++.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~ 246 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEK 246 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777887777877776666666666554444555544444445555543
No 106
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.61 E-value=70 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
+-.+++..|++||.+..+++.+..++ +..+++.+.
T Consensus 89 ~Q~~ri~~L~~E~~~~~~el~~~v~e-~e~ll~~v~ 123 (132)
T 1ykh_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKK-KEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34467778888888888777777654 555555543
No 107
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=38.41 E-value=1.3e+02 Score=22.95 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELR 217 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk 217 (254)
++.++.++..|++||.+|+
T Consensus 47 ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 108
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.17 E-value=56 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+.+.|.+...|+..|..|..++.||+.
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44566777888888888888888888874
No 109
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=37.85 E-value=16 Score=32.09 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.|.+|.++|++||.+|+.++.++.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~ 47 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVAD 47 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555544
No 110
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.81 E-value=30 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.++.|..++.+|++.|..|..+..-|+.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777666665554
No 111
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.11 E-value=87 Score=23.26 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..|+.+.+.++.+...|.++++.+.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~ 97 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLN 97 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 112
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.04 E-value=72 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
+-++++..|++||.+..+++.+..++ +..+++.+.
T Consensus 89 eQ~~ri~~Le~E~~~~~~el~~~v~e-ae~ll~~v~ 123 (151)
T 1yke_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKK-KEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34467777888888877777776654 555555554
No 113
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.01 E-value=29 Score=30.14 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~q 219 (254)
.+.+|+++..+|.+||++|.++
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777664
No 114
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=36.97 E-value=21 Score=28.15 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSR-----------------ARKQAYTMELEAEVAKLKEE 212 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR-----------------~RKKayleeLE~eV~~Le~E 212 (254)
...||+.|-.|..+-.+-++= .+--+|+..|+.++..|+++
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788877765442 12346777777766666544
No 115
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.75 E-value=1.4e+02 Score=35.45 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 188 AARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 188 A~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
|...=+.+++.+.+||++++.|+++.+++.++.+.|+
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555555444444443
No 116
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.42 E-value=63 Score=21.26 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.+++|..+...|+.|..+|+.-+.
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 456666666666666666665543
No 117
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.29 E-value=77 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~e 222 (254)
++|+++++++..|+++++.++.+
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 20 EELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554433
No 118
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.95 E-value=28 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~e 222 (254)
.+|..|+.+|..|..++..
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678888888888877653
No 119
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.91 E-value=51 Score=25.83 Aligned_cols=22 Identities=36% Similarity=0.506 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~ 221 (254)
+.||.+...|+++++.|..+++
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.76 E-value=1.5e+02 Score=23.25 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
...|.+++.|++++.+|++++++.
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666655543
No 121
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.42 E-value=39 Score=22.82 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.+-+.|++....|..+++.|.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 122
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.17 E-value=63 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.088 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
+..++|-+++..|+++..+|..++.++.+...
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777776543
No 123
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.08 E-value=1.3e+02 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.++.+..++..|++||..|+.-.++
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665543333
No 124
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.01 E-value=1.3e+02 Score=28.73 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
.+|.++||.++..|++....=...+..|+...++|+.++.++
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367778888887777665554446666666666666655443
No 125
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.85 E-value=39 Score=20.81 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025340 209 LKEENEELRKKQDEMM 224 (254)
Q Consensus 209 Le~EN~eLk~ql~eL~ 224 (254)
|+=||+.|..++..|.
T Consensus 5 lefendaleqkiaalk 20 (28)
T 3ra3_A 5 LEFENDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4444444444444444
No 126
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=33.82 E-value=88 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKL 209 (254)
Q Consensus 193 ~RKKayleeLE~eV~~L 209 (254)
++|++|+.+|......+
T Consensus 22 ~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 22 KQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899999998766543
No 127
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.59 E-value=53 Score=29.55 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 196 QAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 196 KayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..+..|+.+.+.|.++..++++++..|++
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554
No 128
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.48 E-value=92 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk 228 (254)
+..++|-.++..|+++..+|..++.++.++..
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777777777776543
No 129
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.46 E-value=32 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.|+.+...|+++...|+.+++.|.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555544444444443
No 130
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.43 E-value=1.5e+02 Score=21.75 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 190 RSRARKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 190 RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+-|...+..+..||.++.+++.+-+...++.++|...
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888888888877777777777653
No 131
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=32.41 E-value=2e+02 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
.+|..-..++|.|+++++++.+.+-.+++
T Consensus 57 ~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 57 EKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777778899999999998888777666
No 132
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.18 E-value=1.1e+02 Score=29.55 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEMQKN 229 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ 229 (254)
..++|-+++..|+++..+|..++.++++....
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888777777765443
No 133
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.96 E-value=59 Score=28.66 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccC
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQK--NQVLEMMNMQQG 240 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk--~ql~E~~~~~~~ 240 (254)
.+.|..+++.|++|+..|+.++++|.+.-. +-+.+++..-.+
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778899999999999999999987632 234455544434
No 134
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.95 E-value=76 Score=19.92 Aligned_cols=24 Identities=46% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql 220 (254)
+.+..||.+..+|+...++|..++
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888877654
No 135
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.93 E-value=18 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 195 KQAYTMELEAEVAKLKEENEEL 216 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eL 216 (254)
+..|++.||.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887665554
No 136
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.65 E-value=2.4e+02 Score=27.67 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMN 236 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~ 236 (254)
+=.+|.++||.++..|++....=...|..|+...++|+.++.+
T Consensus 108 ~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQR 150 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKR 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347788888888888776655556677777666666666554
No 137
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.47 E-value=80 Score=28.45 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+.++.|+.+.+.|++|.++|+++.+.+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555556665555555444443
No 138
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.45 E-value=53 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 209 LKEENEELRKKQDEMMEMQKNQVL 232 (254)
Q Consensus 209 Le~EN~eLk~ql~eL~e~qk~ql~ 232 (254)
.+++...|+.+++.|.++ |-|++
T Consensus 13 tkeQi~~l~~kl~~LkeE-KHQLF 35 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEE-KHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344444555555555543 44444
No 139
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.30 E-value=1.3e+02 Score=20.83 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~e 225 (254)
|.++.+|++.|..|-.++.+|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~ 25 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEF 25 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777764
No 140
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.29 E-value=1.3e+02 Score=20.66 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 187 SAARSRARKQAYTMELEAEVAKLKEEN 213 (254)
Q Consensus 187 SA~RSR~RKKayleeLE~eV~~Le~EN 213 (254)
-|-||=.|-+..++.||.++..-+.++
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444443333333
No 141
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.47 E-value=65 Score=24.35 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..|..+++.+.+|...|+.+...|.+.
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888887777665
No 142
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=30.38 E-value=75 Score=25.77 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 195 KQAYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 195 KKayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
--+-.++|+.+++.|+....+=-..+..|....+.|+.||..+-
T Consensus 20 y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLE 63 (119)
T 1lwu_A 20 YSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVE 63 (119)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788888999888888777788888888888999887543
No 143
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.13 E-value=90 Score=23.98 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHH
Q 025340 191 SRARKQAYTMELE-A---EVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 191 SR~RKKayleeLE-~---eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
-+-|-+-|...=- . +...|+.++..|..+++.|.++
T Consensus 31 RtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 31 RTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554332 2 3355888888888888777765
No 144
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.00 E-value=1.6e+02 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~ 221 (254)
+|...++.|++|-+-...++.
T Consensus 29 eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 29 QYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444333333333
No 145
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.92 E-value=1.1e+02 Score=26.12 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 188 AARSRARKQAYTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 188 A~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
|-++-.+-++.++.||.++...++++..+.++++
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666554
No 146
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=29.42 E-value=93 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELR 217 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk 217 (254)
.+.+++++++|.++.++|+
T Consensus 113 ~~~l~~~~~~l~~~l~~le 131 (139)
T 3eff_K 113 EEAYTRTTRALHERFDRLE 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455444444444443
No 147
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.38 E-value=2.1e+02 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
+|++|+.|+..|..++.+..++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666554
No 148
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.86 E-value=85 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQ 220 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql 220 (254)
++.|+.+++.|+.+...|..++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444
No 149
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.71 E-value=54 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELR 217 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk 217 (254)
.|++.||.++..|+.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 478888888888887776664
No 150
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.57 E-value=36 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~q 219 (254)
.++.|..++..|++++..|+.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666667777777666654
No 151
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=28.51 E-value=1.8e+02 Score=21.53 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+....+..-+.+-++...++...++ +||.+...|..+...|..++.+..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334444445555555555544443 4555566666665555555444443
No 152
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.36 E-value=1.5e+02 Score=20.50 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
+|..++..|...|..|...+.+..
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR 36 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEAR 36 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433
No 153
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.35 E-value=1.8e+02 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 193 ARKQAYTMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 193 ~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
.++|+.-.+-.+++++|+.|...|..++.+..
T Consensus 56 ~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 56 EKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444556666666666665555544
No 154
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.32 E-value=1.4e+02 Score=22.04 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEE 215 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~e 215 (254)
++.+||.++..++.-.++
T Consensus 15 Ri~~LE~klAfqE~tIee 32 (78)
T 3efg_A 15 RLVELETRLSFQEQALTE 32 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555443333333
No 155
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.25 E-value=56 Score=28.54 Aligned_cols=16 Identities=56% Similarity=0.879 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRK 218 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ 218 (254)
..+++.|+.||++|++
T Consensus 42 ~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 42 ESEVADLKKENKDLKE 57 (255)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555554
No 156
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.15 E-value=1.3e+02 Score=21.06 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..||.-|..|+..|..|.+.+..|+.-
T Consensus 20 aklenivarlendnanlekdianlekd 46 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHH
Confidence 457778888888888888888877753
No 157
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=27.74 E-value=85 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL 223 (254)
++++.-.+|...|+.+.++|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 33333333334444433333
No 158
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.67 E-value=69 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
..+.+|+.++..|...|+.|...+.+++++
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888877777754
No 159
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.49 E-value=1.6e+02 Score=25.34 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNM 237 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~ 237 (254)
..++.+|++...|...|..|..+++.++.+.+....|..+.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~ 89 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQ 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 160
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.38 E-value=1.9e+02 Score=26.53 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+..|+..++.+++...+|+.++.+|++
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555543
No 161
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=27.01 E-value=3.1e+02 Score=23.73 Aligned_cols=54 Identities=9% Similarity=0.152 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 172 KVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 172 ~~eeRRqRRmiKNRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+..+|.+.+..+.+..+..++..-+..+..+...-...+++--.+-..+.++++
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~ 236 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEE 236 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444666666677777777766655555555554444444444444444444443
No 162
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.74 E-value=1.1e+02 Score=18.75 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKK 219 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~q 219 (254)
++|-+++++|.+....|+++
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444443
No 163
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=26.50 E-value=1.1e+02 Score=23.95 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=3.5
Q ss_pred eeccCCC
Q 025340 126 VSSGSPA 132 (254)
Q Consensus 126 ~~~~sP~ 132 (254)
+++.||.
T Consensus 46 i~~isp~ 52 (117)
T 3kin_B 46 VICCSPS 52 (117)
T ss_dssp EEEECCS
T ss_pred eeeeCCC
Confidence 4455553
No 164
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=26.02 E-value=1.2e+02 Score=26.98 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHhhHHH-HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025340 178 QRRMIKNRESA-ARSRARKQAY----------------TMELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQQ 239 (254)
Q Consensus 178 qRRmiKNRESA-~RSR~RKKay----------------leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~~ 239 (254)
.=+-|+|||.. +.+|.+|+.- +..||.|+...+.++.-...++..+. .+.+.|.+..+|
T Consensus 95 ~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k---R~~lKEa~~~~f 170 (234)
T 3plt_A 95 TLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNIT---REKLKAAYSYMF 170 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhH---HHHHHHHHHHHH
Confidence 33457788766 4444444432 34555555555555544444554443 233444444443
No 165
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.97 E-value=1.5e+02 Score=21.78 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=14.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 025340 181 MIKNRESAARSRARKQAYTMELE 203 (254)
Q Consensus 181 miKNRESA~RSR~RKKayleeLE 203 (254)
.-+|+..|..+=+|||-|-..|+
T Consensus 40 ~~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 40 GTKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHhHHHHHHH
Confidence 35666677777777776644444
No 166
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.49 E-value=2.6e+02 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 194 RKQAYTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 194 RKKayleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.-++....|..++..|+.+..+|..+++++.+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777777766643
No 167
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.28 E-value=1.5e+02 Score=21.59 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~ 224 (254)
...|+.+.+.++.+...|.++++.+.
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 168
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.89 E-value=1.8e+02 Score=20.21 Aligned_cols=29 Identities=0% Similarity=0.021 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDEMMEM 226 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~eL~e~ 226 (254)
.+++|..+|..|..+...|...+..|...
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655543
No 169
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.72 E-value=56 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEE 215 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~e 215 (254)
.|+..||.++..|+....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778888888777654433
No 170
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.56 E-value=1.9e+02 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRKKQDEMMEMQKNQVL 232 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~ 232 (254)
+..||+++..|+.++...+.+...+.++..+.+.
T Consensus 137 V~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~ 170 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLL 170 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544333333
No 171
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.46 E-value=1.5e+02 Score=19.52 Aligned_cols=18 Identities=33% Similarity=0.363 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMM 224 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~ 224 (254)
.+|+...++|..+..+|+
T Consensus 4 nQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHH
Confidence 344444444444444443
No 172
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.14 E-value=84 Score=23.82 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 199 leeLE~eV~~Le~EN~eLk~ 218 (254)
+..||.++..|+.+...|+.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455555544444444443
No 173
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.99 E-value=1.8e+02 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~ 224 (254)
..+..|+.+...++..++...
T Consensus 84 ~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 84 EMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544433
No 174
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.98 E-value=1.8e+02 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL 223 (254)
.+..|+.+...++..++..
T Consensus 83 ~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 4444555555554444443
No 175
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=23.72 E-value=17 Score=31.14 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQD 221 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~ 221 (254)
..+++++++++|+++.++|+++++
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp ------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666655443
No 176
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.60 E-value=2.5e+02 Score=21.42 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=13.8
Q ss_pred HHHhhHHHHHHH---HHHHHHHHHHH
Q 025340 181 MIKNRESAARSR---ARKQAYTMELE 203 (254)
Q Consensus 181 miKNRESA~RSR---~RKKayleeLE 203 (254)
-..-||+|...+ ++-++.+..|.
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LK 46 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALK 46 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHH
Confidence 456678888775 44445555554
No 177
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.26 E-value=1.6e+02 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 198 YTMELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 198 yleeLE~eV~~Le~EN~eLk~ql~e 222 (254)
.+.+|+.+++.++..+.+|+.-..+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777766666666654433
No 178
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=23.09 E-value=60 Score=25.06 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQKNQVLEMMNMQ 238 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~qk~ql~E~~~~~ 238 (254)
++|+.+++.|+....+=-..+..|....+.|+.||..+-
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLE 41 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 41 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777666678888888888888876543
No 179
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.01 E-value=2.1e+02 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.+++.++..|+.+...|..+++.|.+
T Consensus 74 ~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 74 NNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 180
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.90 E-value=1.1e+02 Score=23.36 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 200 MELEAEVAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 200 eeLE~eV~~Le~EN~eLk~ql~eL~e~q 227 (254)
+.|..+++.+++|...|+.++++|.+.-
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889999999999999988763
No 181
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=22.29 E-value=1.4e+02 Score=22.92 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025340 207 AKLKEENEELRKKQDEMME 225 (254)
Q Consensus 207 ~~Le~EN~eLk~ql~eL~e 225 (254)
+.++++-.+|..+++.+++
T Consensus 114 ~~l~~~~~~l~~~l~~le~ 132 (139)
T 3eff_K 114 EAYTRTTRALHERFDRLER 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666554
No 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.28 E-value=3.6e+02 Score=24.94 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.+.+|+.+.+.|+++.++++.+++++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 183
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.57 E-value=1.1e+02 Score=21.95 Aligned_cols=22 Identities=32% Similarity=0.663 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDE 222 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~e 222 (254)
.|..+|..|+.||..|++-+++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888876654
No 184
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.47 E-value=2.2e+02 Score=21.72 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 201 ELEAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 201 eLE~eV~~Le~EN~eLk~ql~eL~e 225 (254)
.|+..++.|++....++.+++.+.+
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554443
No 185
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.39 E-value=3.3e+02 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAE-VAKLKEENEELRKKQDEMMEMQK 228 (254)
Q Consensus 203 E~e-V~~Le~EN~eLk~ql~eL~e~qk 228 (254)
-++ +..|+++..+|..++.++++...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 66666666666666666665533
No 186
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.16 E-value=2.6e+02 Score=20.89 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025340 203 EAEVAKLKEENEELRKKQDEMME 225 (254)
Q Consensus 203 E~eV~~Le~EN~eLk~ql~eL~e 225 (254)
+.-+..|+.|-.+|.+.++-|..
T Consensus 45 ~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 45 EEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 187
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.12 E-value=1.6e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=16.0
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 025340 199 TMELEAEVAK---LKEENEELRKKQDEMME 225 (254)
Q Consensus 199 leeLE~eV~~---Le~EN~eLk~ql~eL~e 225 (254)
+.+||.++.. .-.+|+.+..++..+.-
T Consensus 81 ~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 81 NIEMRHRLSQLMDVARENDRLFDKTRRLVL 110 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655544 34577777777666653
No 188
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.03 E-value=2.6e+02 Score=20.66 Aligned_cols=10 Identities=40% Similarity=0.557 Sum_probs=4.8
Q ss_pred HHHHHHHHhh
Q 025340 228 KNQVLEMMNM 237 (254)
Q Consensus 228 k~ql~E~~~~ 237 (254)
.|.|.|-|+.
T Consensus 59 VNKLAEIMNR 68 (71)
T 1s1c_X 59 VNKLAEIMNR 68 (71)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 3445555543
No 189
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.97 E-value=2.4e+02 Score=20.38 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025340 206 VAKLKEENEELRKKQDEMMEMQ 227 (254)
Q Consensus 206 V~~Le~EN~eLk~ql~eL~e~q 227 (254)
+..|+.++..|..+++.|....
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887653
No 190
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.96 E-value=1.5e+02 Score=20.13 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 197 AYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 197 ayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
+.+..||.++..|+.....|+.++..|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888887765
No 191
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=20.91 E-value=2.3e+02 Score=24.26 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 180 RMIKNRESAAR----SRARKQAYTMELEAEVAKLKEENEELRK 218 (254)
Q Consensus 180 RmiKNRESA~R----SR~RKKayleeLE~eV~~Le~EN~eLk~ 218 (254)
.+.++|..+.. +..-|++.+.++++++..|+.....|..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (310)
T 3n5l_A 261 ELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQ 303 (310)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444 5566666777777777766655554443
No 192
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.39 E-value=2.1e+02 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025340 205 EVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~ 224 (254)
+++.-++...+|++++.+|+
T Consensus 17 EI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 193
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.16 E-value=1.5e+02 Score=22.56 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025340 184 NRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQDEM 223 (254)
Q Consensus 184 NRESA~RSR~RKKayleeLE~eV~~Le~EN~eLk~ql~eL 223 (254)
|=.||-.+-.+-|+- +..++...+..|-.+.+++.+.
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~ea 50 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREA 50 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444432 2233344444444444444433
No 194
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=20.10 E-value=61 Score=22.83 Aligned_cols=16 Identities=44% Similarity=0.493 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 025340 189 ARSRARKQAYTMELEA 204 (254)
Q Consensus 189 ~RSR~RKKayleeLE~ 204 (254)
-.||.-|++|+.+|-.
T Consensus 15 ~LS~~~K~sYi~~L~~ 30 (53)
T 1r4g_A 15 PLSRAEKAAYVKSLSK 30 (53)
T ss_dssp CCCSHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH
Confidence 3578899999999974
No 195
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.10 E-value=1.4e+02 Score=29.25 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhccCCCCCccccc
Q 025340 205 EVAKLKEENEELRKKQDEMMEMQKN---------QVLEMMNMQQGGKRRCLRRT 249 (254)
Q Consensus 205 eV~~Le~EN~eLk~ql~eL~e~qk~---------ql~E~~~~~~~~k~~~LRRT 249 (254)
++.+|++|.++|.+++++|++...+ .-++.++.++|.+ |||
T Consensus 455 e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~----RrT 504 (514)
T 2inr_A 455 DIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE----RLS 504 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC----CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC----CCc
Confidence 5566777777777777777654222 2233445667754 665
No 196
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.02 E-value=4.1e+02 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025340 204 AEVAKLKEENEELRKKQDEMM 224 (254)
Q Consensus 204 ~eV~~Le~EN~eLk~ql~eL~ 224 (254)
++++.++.+...|..++.++.
T Consensus 97 kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
Done!