BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025342
(254 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118488084|gb|ABK95862.1| unknown [Populus trichocarpa]
Length = 246
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/238 (70%), Positives = 187/238 (78%), Gaps = 9/238 (3%)
Query: 18 SSRVR---ASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTST 74
S RVR AS DTQQRLSYNPNAP K P NLN N N + A P+STVT T+
Sbjct: 14 SRRVRVRAASVDTQQRLSYNPNAP---KNPFKNLNPKPN-NFVPTSTAPAPSSTVTLTA- 68
Query: 75 DQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYA 134
Q+V LLK T V L++SY+GYERWLP+PPKV KPRSVFNAA+LAYIGD I+ELYA
Sbjct: 69 -QTVSGLLKRTTVIVQEQLNDSYLGYERWLPSPPKVEKPRSVFNAATLAYIGDSIFELYA 127
Query: 135 RRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTR 194
RRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLLND+YLS EER ++RWGKNVGS TR
Sbjct: 128 RRHFLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVGSTKTR 187
Query: 195 TKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSKLT 252
TKRR G AVYNRASSLETL G+LYLTN +RLE+VM KLGF+ SSTQMI EE NSK T
Sbjct: 188 TKRRVGVAVYNRASSLETLVGFLYLTNVSRLEEVMLKLGFSTDSSTQMIPEEENSKST 245
>gi|224128634|ref|XP_002329052.1| predicted protein [Populus trichocarpa]
gi|222839723|gb|EEE78046.1| predicted protein [Populus trichocarpa]
Length = 246
Score = 316 bits (810), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/238 (70%), Positives = 187/238 (78%), Gaps = 9/238 (3%)
Query: 18 SSRVR---ASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTST 74
S RV+ AS DTQQRLSYNPNAP K P NLN N N + A P+STVT T+
Sbjct: 14 SRRVKVRAASVDTQQRLSYNPNAP---KNPFKNLNPKPN-NFVPTSTAPAPSSTVTLTA- 68
Query: 75 DQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYA 134
Q+V LLK T V L++SY+GYERWLP+PPKV KPRSVFNAA+LAYIGD I+ELYA
Sbjct: 69 -QTVSGLLKRTTVIVQEQLNDSYLGYERWLPSPPKVEKPRSVFNAATLAYIGDSIFELYA 127
Query: 135 RRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTR 194
RRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLLND+YLS EER ++RWGKNVGS TR
Sbjct: 128 RRHFLFPPLSIEEHNDRVMAVVRCEAQDALLQKLLNDNYLSEEERLILRWGKNVGSTKTR 187
Query: 195 TKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSKLT 252
TKRR G AVYNRASSLETL G+LYLTN +RLE+VM KLGF+ SSTQMI EE NSK T
Sbjct: 188 TKRRVGVAVYNRASSLETLVGFLYLTNVSRLEEVMLKLGFSTDSSTQMIPEEENSKST 245
>gi|255572959|ref|XP_002527410.1| RNA binding protein, putative [Ricinus communis]
gi|223533220|gb|EEF34976.1| RNA binding protein, putative [Ricinus communis]
Length = 248
Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 185/233 (79%), Gaps = 15/233 (6%)
Query: 21 VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTP---TSTDQS 77
VRAS+DTQQRL+YNPNAPRK K N S N ++ PP +T +P T T QS
Sbjct: 16 VRASWDTQQRLTYNPNAPRKHTK-----NPTSQPN----TLSLPPPTTTSPLSVTVTTQS 66
Query: 78 VFDLLKHPT--QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
V +LLK T QGV+ LD++Y+GYERW+P PPKV KPRSV+NAA+LAYIGD IYELYAR
Sbjct: 67 VSNLLKRNTTPQGVMKKLDDTYLGYERWMPTPPKVEKPRSVYNAATLAYIGDSIYELYAR 126
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIEEYN+RVM+VVRCE QDALL KLLND++LS EERDV+RWGKN+ SA TRT
Sbjct: 127 RHFLFPPLSIEEYNDRVMSVVRCEAQDALLHKLLNDNFLSKEERDVLRWGKNIASAKTRT 186
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEAN 248
K+RAGAAVYNRASSLETL GYLYLT+ RLE+VM KLGF+ SST +LEE +
Sbjct: 187 KKRAGAAVYNRASSLETLVGYLYLTDVTRLEEVMLKLGFSVDSSTP-VLEETD 238
>gi|449458177|ref|XP_004146824.1| PREDICTED: uncharacterized protein LOC101205919 [Cucumis sativus]
Length = 245
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/240 (64%), Positives = 185/240 (77%), Gaps = 11/240 (4%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS +S+ + AS+DTQQRLSYNPNAPR K P + + + S + AI T T
Sbjct: 4 LSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNAIL-----TATNIR 58
Query: 74 TDQSVFDLL--KHPTQGVVANLDES---YMGYERWLPNPPKVGKPRSVFNAASLAYIGDC 128
T+Q V DLL ++P+ L+E Y+GY++WLP+PPKV KPRSVFNAASLAYIGDC
Sbjct: 59 TNQIVSDLLNRRNPSSIEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDC 118
Query: 129 IYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNV 188
IYELYARRHFLFPPLSIEEYN+RVMAVVRCE QD LLQKLLND++L+ ERD++RWGKNV
Sbjct: 119 IYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDVLLQKLLNDNFLTEAERDILRWGKNV 178
Query: 189 GSAN-TRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEA 247
GS++ TRTK+RAGAAVYNRASSLETL GYLYL N RL+++M KLGF+ SS QMI EE+
Sbjct: 179 GSSSKTRTKKRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 238
>gi|225442262|ref|XP_002279256.1| PREDICTED: uncharacterized protein LOC100242891 [Vitis vinifera]
gi|297743076|emb|CBI35943.3| unnamed protein product [Vitis vinifera]
Length = 233
Score = 293 bits (749), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 151/242 (62%), Positives = 180/242 (74%), Gaps = 20/242 (8%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIK-----KPPLNLNTNSNSNKSDVAIAKPPTST 68
+ ++S VRAS+DT RL YNP+ RK K KPPLN S V + PT T
Sbjct: 4 VGMASLSVRASWDTLPRLPYNPHNRRKPKTPISLKPPLN--------PSPVTLVASPTGT 55
Query: 69 VTPTSTDQSVFDLLKHPTQ-GVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGD 127
V P V +LL+ Q D+SYMGY+ WLP+PPKV KPRS +NAASLAY+GD
Sbjct: 56 VVP------VAELLRRDIQNSSQVKSDKSYMGYDIWLPSPPKVKKPRSAYNAASLAYLGD 109
Query: 128 CIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN 187
CI+ELYARRHFLFPPL++EEYN+RVMAVVRCE QDALLQKLL+D YLS EERDV+RWGKN
Sbjct: 110 CIFELYARRHFLFPPLNMEEYNDRVMAVVRCEAQDALLQKLLDDYYLSEEERDVLRWGKN 169
Query: 188 VGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEA 247
+GSA TRTK+RAG AVYNRASSLETL GYLYLT+ NRLE+VM KLGF+ +STQ+ L+E
Sbjct: 170 IGSAKTRTKKRAGVAVYNRASSLETLVGYLYLTDVNRLEEVMRKLGFSTDASTQLGLQET 229
Query: 248 NS 249
++
Sbjct: 230 DT 231
>gi|79366424|ref|NP_175910.2| Ribonuclease III-like protein [Arabidopsis thaliana]
gi|34146874|gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana]
gi|51968468|dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana]
gi|332195069|gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana]
Length = 237
Score = 289 bits (739), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 181/237 (76%), Gaps = 10/237 (4%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS SS+ VRA+ DTQ +L YNPNAPR +KK NSN S P+S+ T+
Sbjct: 4 LSASSTIVRAALDTQPKLRYNPNAPRNVKK---------NSNLSSFVPPSSPSSSSPATN 54
Query: 74 TDQSVFDLLKHP-TQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYEL 132
SV DLLK P ++ + D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE+
Sbjct: 55 LSVSVSDLLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEI 114
Query: 133 YARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN 192
YARRHFLFPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ERD++RWGKNVGS
Sbjct: 115 YARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVK 174
Query: 193 TRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANS 249
TR+ RRAG AVYN+ASSLETL GYLYL+N RLE++M KLGF++GSST+ +++EA S
Sbjct: 175 TRSTRRAGVAVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMVKEAGS 231
>gi|351723013|ref|NP_001236496.1| uncharacterized protein LOC100527214 [Glycine max]
gi|255631798|gb|ACU16266.1| unknown [Glycine max]
Length = 240
Score = 289 bits (739), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 173/231 (74%), Gaps = 20/231 (8%)
Query: 21 VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQSVFD 80
VRAS+DTQQRL YNPNAPRK+K + +A P + +Q + D
Sbjct: 16 VRASWDTQQRLPYNPNAPRKLK---------------NNIVATPTPTPPITRKREQYISD 60
Query: 81 LLKH----PTQGVVANL-DESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
LLK PT G + + DE+Y+GYE+WLP PPKV KPRSVFNAA+LAYIGDCIYELYAR
Sbjct: 61 LLKRATPLPTIGHIEEVQDETYLGYEKWLPTPPKVVKPRSVFNAATLAYIGDCIYELYAR 120
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIEEYN+RVMAVVRCE QDALLQKLL ++LS +ERDV+RWGKN+ S T+T
Sbjct: 121 RHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLESNFLSDQERDVLRWGKNIVSNKTKT 180
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
K+RAGAAVYNRASSLETL GYLYLTN NRLE +M +LGF+ SS + +EE
Sbjct: 181 KKRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSVALNVEE 231
>gi|358344607|ref|XP_003636379.1| hypothetical protein MTR_040s0004 [Medicago truncatula]
gi|355502314|gb|AES83517.1| hypothetical protein MTR_040s0004 [Medicago truncatula]
Length = 279
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 182/251 (72%), Gaps = 21/251 (8%)
Query: 7 TSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
+SSL ++ SSS+ V+AS+DTQQRL YN NAPRK+ + + +
Sbjct: 5 SSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSPS 54
Query: 63 KPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPRS 115
+S T + + DLLK PT G + + DE+Y+GY+RWLP PPKV KPRS
Sbjct: 55 PTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRS 114
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
VFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL ++LS
Sbjct: 115 VFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLS 174
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
+ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETL GYLYLTN NRLE +M +LGF+
Sbjct: 175 DQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFS 234
Query: 236 NGSSTQMILEE 246
SS + LEE
Sbjct: 235 VDSSMPLNLEE 245
>gi|357454675|ref|XP_003597618.1| hypothetical protein MTR_2g100220 [Medicago truncatula]
gi|355486666|gb|AES67869.1| hypothetical protein MTR_2g100220 [Medicago truncatula]
Length = 258
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 182/251 (72%), Gaps = 21/251 (8%)
Query: 7 TSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
+SSL ++ SSS+ V+AS+DTQQRL YN NAPRK+ + + +
Sbjct: 5 SSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSPS 54
Query: 63 KPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPRS 115
+S T + + DLLK PT G + + DE+Y+GY+RWLP PPKV KPRS
Sbjct: 55 PTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRS 114
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
VFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL ++LS
Sbjct: 115 VFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLS 174
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
+ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETL GYLYLTN NRLE +M +LGF+
Sbjct: 175 DQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFS 234
Query: 236 NGSSTQMILEE 246
SS + LEE
Sbjct: 235 VDSSMPLNLEE 245
>gi|21536670|gb|AAM61002.1| unknown [Arabidopsis thaliana]
Length = 247
Score = 275 bits (704), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 147/235 (62%), Positives = 181/235 (77%), Gaps = 13/235 (5%)
Query: 17 SSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQ 76
+SS VRA+ DTQ RL YNPNAPRK+KK P N NS + A P ++
Sbjct: 6 ASSTVRAALDTQPRLPYNPNAPRKVKKIP-----NGNSFLPPPSPAPSPGISI------- 53
Query: 77 SVFDLLKHPT-QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P+ + + +LD++YMGYE W P+PPK+ KPRSVFNAASLA+IGD IYELYAR
Sbjct: 54 SVADLLKRPSSKEITVDLDDTYMGYETWSPSPPKLEKPRSVFNAASLAFIGDSIYELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AVVRCE Q ALL+KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLKKLVDDDFLTKEERDILRWGKNLGSARTRT 173
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSK 250
+RRAG AVY +ASSLETL GYLYLTN RLE +M KLGF++ SST++++EE N K
Sbjct: 174 RRRAGNAVYKKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETNPK 228
>gi|18400144|ref|NP_566463.1| Ribonuclease III family protein [Arabidopsis thaliana]
gi|14423484|gb|AAK62424.1|AF386979_1 Unknown protein [Arabidopsis thaliana]
gi|18377564|gb|AAL66948.1| unknown protein [Arabidopsis thaliana]
gi|332641884|gb|AEE75405.1| Ribonuclease III family protein [Arabidopsis thaliana]
Length = 247
Score = 273 bits (698), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/235 (62%), Positives = 180/235 (76%), Gaps = 13/235 (5%)
Query: 17 SSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQ 76
+SS VRA+ DTQ RL YNPNAPRK+KK P N NS + A P ++
Sbjct: 6 ASSTVRAALDTQPRLPYNPNAPRKVKKIP-----NGNSFLPPPSPAPSPGISI------- 53
Query: 77 SVFDLLKHPT-QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P+ + + ++D++YMGYE W P+PPK+ KPRSVFN ASLA+IGD IYELYAR
Sbjct: 54 SVADLLKRPSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AVVRCE Q ALL KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRT 173
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSK 250
+RRAG AVYN+ASSLETL GYLYLTN RLE +M KLGF++ SST++++EE N K
Sbjct: 174 RRRAGNAVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETNPK 228
>gi|297829918|ref|XP_002882841.1| hypothetical protein ARALYDRAFT_478773 [Arabidopsis lyrata subsp.
lyrata]
gi|297328681|gb|EFH59100.1| hypothetical protein ARALYDRAFT_478773 [Arabidopsis lyrata subsp.
lyrata]
Length = 245
Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/235 (61%), Positives = 179/235 (76%), Gaps = 13/235 (5%)
Query: 17 SSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQ 76
+SS VRA+ DTQ RL YNPNAPRK+KK P N+NS S
Sbjct: 6 ASSTVRAALDTQPRLPYNPNAPRKVKKTP-----NNNSFLPP-------PSPPPSPGISI 53
Query: 77 SVFDLLKHP-TQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P ++ + ++D++YMGYE W P+PPK+ KPRSVFNAASLA+IGD I+ELYAR
Sbjct: 54 SVADLLKRPASKELTVDVDDTYMGYETWSPSPPKLEKPRSVFNAASLAFIGDSIFELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AVVRCE Q ALL+KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLKKLVDDDFLTKEERDILRWGKNLGSARTRT 173
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSK 250
+RRAG AVYN+ASSLETL GYLYLTN RLE +M KLGF++ SST++++EEA K
Sbjct: 174 RRRAGNAVYNKASSLETLIGYLYLTNGKRLEKIMQKLGFSSDSSTEIVIEEAKPK 228
>gi|297853216|ref|XP_002894489.1| hypothetical protein ARALYDRAFT_314742 [Arabidopsis lyrata subsp.
lyrata]
gi|297340331|gb|EFH70748.1| hypothetical protein ARALYDRAFT_314742 [Arabidopsis lyrata subsp.
lyrata]
Length = 287
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 180/285 (63%), Gaps = 58/285 (20%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS SS+ VRA+ DTQ +L YNPNAPR +K N +S ++ + +T T
Sbjct: 4 LSASSTIVRAALDTQPKLRYNPNAPRNVK--------NLSSFVPPLSPSSSSPATNLTTG 55
Query: 74 TDQSVFDLLKHPTQGVVAN-LDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYE- 131
T+ SV DLLK P V N D++ +GY++W P+PPKV KPRSVFNAASLAYIGD IYE
Sbjct: 56 TNVSVSDLLKRPASKDVGNGFDDNCIGYDKWFPSPPKVEKPRSVFNAASLAYIGDSIYEQ 115
Query: 132 ------------------------------------------------LYARRHFLFPPL 143
+YARRHFLFPPL
Sbjct: 116 GYQVMIILFFRMQGCQMRIIFSDYSIKTATMSLCYFLYLSLAVLGYKNIYARRHFLFPPL 175
Query: 144 SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAV 203
SIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ERDV+RWGKNVGSA TR+ RRAG AV
Sbjct: 176 SIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDVLRWGKNVGSAKTRSTRRAGVAV 235
Query: 204 YNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEAN 248
YN+ASSLETL GYLYL+N RLE++M KLGF++GSST+ +++EA
Sbjct: 236 YNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMIKEAG 280
>gi|334185317|ref|NP_001189880.1| Ribonuclease III family protein [Arabidopsis thaliana]
gi|332641885|gb|AEE75406.1| Ribonuclease III family protein [Arabidopsis thaliana]
Length = 241
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/235 (60%), Positives = 175/235 (74%), Gaps = 19/235 (8%)
Query: 17 SSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQ 76
+SS VRA+ DTQ RL YNPNAPRK+KK P N NS + A P ++
Sbjct: 6 ASSTVRAALDTQPRLPYNPNAPRKVKKIP-----NGNSFLPPPSPAPSPGISI------- 53
Query: 77 SVFDLLKHPT-QGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P+ + + ++D++YMGYE W P+PPK+ KPRSVFN ASLA+IGD IYELYAR
Sbjct: 54 SVADLLKRPSSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AV ALL KL++D +L+ EERD++RWGKN+GSA TRT
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVY------ALLNKLVDDDFLTKEERDILRWGKNLGSARTRT 167
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSK 250
+RRAG AVYN+ASSLETL GYLYLTN RLE +M KLGF++ SST++++EE N K
Sbjct: 168 RRRAGNAVYNKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETNPK 222
>gi|124360401|gb|ABN08414.1| Ribonuclease III [Medicago truncatula]
Length = 223
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 131/224 (58%), Positives = 159/224 (70%), Gaps = 21/224 (9%)
Query: 7 TSSLYLPLSLSSSR----VRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
+SSL ++ SSS+ V+AS+DTQQRL YN NAPRK+ + + +
Sbjct: 5 SSSLSWSITFSSSKFKPVVKASWDTQQRLPYNRNAPRKL----------TTQPPKPQSPS 54
Query: 63 KPPTSTVTPTSTDQSVFDLLKH----PTQGVVANL---DESYMGYERWLPNPPKVGKPRS 115
+S T + + DLLK PT G + + DE+Y+GY+RWLP PPKV KPRS
Sbjct: 55 PTSSSPAPSTRNENYISDLLKRATPLPTIGKIEEVQEHDETYLGYDRWLPTPPKVVKPRS 114
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
VFNAA+LAYIGDCIYELYARRHFLFPPLSIEE+N+RVMAVVRCE QDALLQKLL ++LS
Sbjct: 115 VFNAATLAYIGDCIYELYARRHFLFPPLSIEEFNDRVMAVVRCEAQDALLQKLLISNFLS 174
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+ERDV+RWGKN+ S+ T+TKRRAGAAVYNRASSLETL L
Sbjct: 175 DQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVSAFKL 218
>gi|357126570|ref|XP_003564960.1| PREDICTED: uncharacterized protein LOC100826428 [Brachypodium
distachyon]
Length = 252
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/246 (49%), Positives = 161/246 (65%), Gaps = 17/246 (6%)
Query: 3 VTTCTSSLYLPLSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIA 62
+ + +++ P RVRA++D NP A P + K+ A+
Sbjct: 1 MASVAATMATPTRHHRFRVRAAWDM------NPGAATVAMPKP-------SKAKAKPALP 47
Query: 63 KPPTSTVTPTSTDQSVF-DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAA 120
+ P + TP DL ++G +YMG+E+W LP P+V KPRS++NAA
Sbjct: 48 QSPATATTPARAPPPTHEDLFARSSEGQAKK--STYMGFEKWWLPPAPEVKKPRSLYNAA 105
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAY+GDCIYELYARRHF FPPLSI EYN RVM VV+CE+QD LL KLL + +L+ EERD
Sbjct: 106 SLAYLGDCIYELYARRHFFFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDFLTQEERD 165
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSST 240
++RWG+N+ S+ TRT++RAG AVYNRASSLETL GYLYLTN RLE +M +LGFT+G+S+
Sbjct: 166 ILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGYLYLTNFKRLEQMMFQLGFTSGASS 225
Query: 241 QMILEE 246
Q I +E
Sbjct: 226 QNIADE 231
>gi|326514334|dbj|BAJ96154.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 243
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 140/189 (74%), Gaps = 1/189 (0%)
Query: 64 PPTSTVTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASL 122
P T+T + + DL ++ +YMG+E+W LP P+V KPRS++NAASL
Sbjct: 39 PATATTPARAPPPTHADLFARSSEDQAKKSTSTYMGFEKWWLPPAPEVKKPRSLYNAASL 98
Query: 123 AYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
AY+GDCIYELYARRHF FPPLSI EYN RVM VV+CE+QD LL KLL + +L+ EERD++
Sbjct: 99 AYLGDCIYELYARRHFFFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDFLTEEERDIL 158
Query: 183 RWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQM 242
RWG+N+ S+ TRT++RAG AVYNRASSLETL GYLYLTN RLE +M +LGFT+G+S+Q
Sbjct: 159 RWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGYLYLTNFKRLEQMMFQLGFTSGASSQN 218
Query: 243 ILEEANSKL 251
I +E S
Sbjct: 219 IADELRSSF 227
>gi|326499990|dbj|BAJ90830.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523487|dbj|BAJ92914.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534246|dbj|BAJ89473.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534396|dbj|BAJ89548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 254
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 140/189 (74%), Gaps = 1/189 (0%)
Query: 64 PPTSTVTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASL 122
P T+T + + DL ++ +YMG+E+W LP P+V KPRS++NAASL
Sbjct: 50 PATATTPARAPPPTHADLFARSSEDQAKKSTSTYMGFEKWWLPPAPEVKKPRSLYNAASL 109
Query: 123 AYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
AY+GDCIYELYARRHF FPPLSI EYN RVM VV+CE+QD LL KLL + +L+ EERD++
Sbjct: 110 AYLGDCIYELYARRHFFFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDFLTEEERDIL 169
Query: 183 RWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQM 242
RWG+N+ S+ TRT++RAG AVYNRASSLETL GYLYLTN RLE +M +LGFT+G+S+Q
Sbjct: 170 RWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGYLYLTNFKRLEQMMFQLGFTSGASSQN 229
Query: 243 ILEEANSKL 251
I +E S
Sbjct: 230 IADELRSSF 238
>gi|222615761|gb|EEE51893.1| hypothetical protein OsJ_33476 [Oryza sativa Japonica Group]
Length = 254
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
MG+ERW LP PP+V KPRS++NAASLAY+GDCIYELYARRHF FPPLSI +YN RVM VV
Sbjct: 83 MGFERWWLPPPPEVKKPRSLYNAASLAYLGDCIYELYARRHFFFPPLSINDYNKRVMDVV 142
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GY
Sbjct: 143 KCESQDLLLNKLLGEDFLTQEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGY 202
Query: 217 LYLTNANRLEDVMSKLGFTNGSSTQMILEEANSKLTT 253
LYLTN RLE +M +LGFT+G+S+Q I +E S T
Sbjct: 203 LYLTNFKRLEQLMFQLGFTSGASSQHIADELRSSFQT 239
>gi|62701821|gb|AAX92894.1| Similar to At1g55140 [Oryza sativa Japonica Group]
gi|77549501|gb|ABA92298.1| RNase3 domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215769356|dbj|BAH01585.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 172
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/157 (67%), Positives = 130/157 (82%), Gaps = 1/157 (0%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
MG+ERW LP PP+V KPRS++NAASLAY+GDCIYELYARRHF FPPLSI +YN RVM VV
Sbjct: 1 MGFERWWLPPPPEVKKPRSLYNAASLAYLGDCIYELYARRHFFFPPLSINDYNKRVMDVV 60
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GY
Sbjct: 61 KCESQDLLLNKLLGEDFLTQEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGY 120
Query: 217 LYLTNANRLEDVMSKLGFTNGSSTQMILEEANSKLTT 253
LYLTN RLE +M +LGFT+G+S+Q I +E S T
Sbjct: 121 LYLTNFKRLEQLMFQLGFTSGASSQHIADELRSSFQT 157
>gi|226499290|ref|NP_001144597.1| uncharacterized protein LOC100277612 [Zea mays]
gi|195644380|gb|ACG41658.1| hypothetical protein [Zea mays]
Length = 258
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/194 (58%), Positives = 141/194 (72%), Gaps = 2/194 (1%)
Query: 56 KSDVAIAKPPTSTVTPTSTDQSVF-DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKP 113
K A AKPP +T TP DL ++ +YMG+E+W LP P V KP
Sbjct: 40 KPSKAKAKPPPATTTPARPPPLTHADLFARSSEAQGGVKKSTYMGFEKWWLPPAPVVKKP 99
Query: 114 RSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
RS+++A SLAY+GDCIYELYARRHF FPPLSI EYN RVM VV+CE+QD LL KLL + +
Sbjct: 100 RSLYSAVSLAYLGDCIYELYARRHFFFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDF 159
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GYLYLTN RLE +M +LG
Sbjct: 160 LTEEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGYLYLTNFKRLEQLMFQLG 219
Query: 234 FTNGSSTQMILEEA 247
FT+G+S+Q I + A
Sbjct: 220 FTSGASSQHIADAA 233
>gi|218184557|gb|EEC66984.1| hypothetical protein OsI_33668 [Oryza sativa Indica Group]
Length = 253
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 127/150 (84%), Gaps = 1/150 (0%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
MG+ERW LP PP+V KPRS++NAASLAY+GDCIYELYARRHF FPPLSI +YN RVM VV
Sbjct: 83 MGFERWWLPPPPEVKKPRSLYNAASLAYLGDCIYELYARRHFFFPPLSINDYNKRVMDVV 142
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GY
Sbjct: 143 KCESQDLLLNKLLGEDFLTQEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGY 202
Query: 217 LYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
LYLTN RLE +M +LGFT+G+S+ I +E
Sbjct: 203 LYLTNFKRLEQLMFQLGFTSGASSHHIADE 232
>gi|147784284|emb|CAN70591.1| hypothetical protein VITISV_026735 [Vitis vinifera]
Length = 234
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 160/246 (65%), Gaps = 26/246 (10%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIK-----KPPLNLNTNSNSNKSDVAIAKPPTST 68
+ ++S VRAS+DT RL YNP+ RK K KPPLN S V + PT T
Sbjct: 4 VGMASLSVRASWDTLPRLPYNPHNRRKPKTPISLKPPLN--------PSPVTLVASPTGT 55
Query: 69 VTPTSTDQSVFDLLKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDC 128
V P V +LL+ Q +D M L + P +++ G
Sbjct: 56 VVP------VAELLRRDIQNSSQGIDILLM-----LITIKDIKFPNDFAAGENVSMEGKK 104
Query: 129 I--YELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGK 186
+ +LYARRHFLFPPL++EEYN+RVMAVVRCE QDALLQKLL+D YLS EERDV+RWGK
Sbjct: 105 LDFQKLYARRHFLFPPLNMEEYNDRVMAVVRCEAQDALLQKLLDDYYLSEEERDVLRWGK 164
Query: 187 NVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
N+GSA TRTK+RAG AVYNRASSLETL GYLYLT+ NRLE+VM KLGF+ +STQ+ L+E
Sbjct: 165 NIGSAKTRTKKRAGVAVYNRASSLETLVGYLYLTDVNRLEEVMRKLGFSTDASTQLGLQE 224
Query: 247 ANSKLT 252
+SKLT
Sbjct: 225 TDSKLT 230
>gi|115463165|ref|NP_001055182.1| Os05g0318300 [Oryza sativa Japonica Group]
gi|55168250|gb|AAV44116.1| unknown protein [Oryza sativa Japonica Group]
gi|113578733|dbj|BAF17096.1| Os05g0318300 [Oryza sativa Japonica Group]
gi|215740709|dbj|BAG97365.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 127/150 (84%), Gaps = 1/150 (0%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
MG+ERW LP PP+V KPRS++NAASLAY+GDCIYELYARRHF FPPLSI +YN RVM VV
Sbjct: 77 MGFERWWLPPPPEVKKPRSLYNAASLAYLGDCIYELYARRHFFFPPLSINDYNKRVMDVV 136
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GY
Sbjct: 137 KCESQDLLLNKLLGEDFLTQEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGY 196
Query: 217 LYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
LYLTN RLE +M +LGFT+G+S+ I +E
Sbjct: 197 LYLTNFKRLEQLMFQLGFTSGASSHHIADE 226
>gi|224033177|gb|ACN35664.1| unknown [Zea mays]
gi|414875846|tpg|DAA52977.1| TPA: hypothetical protein ZEAMMB73_241035 [Zea mays]
Length = 255
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/173 (60%), Positives = 132/173 (76%), Gaps = 1/173 (0%)
Query: 80 DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHF 138
DL ++ +YMG+E+W LP P V KPRS+++A SLAY+GDCIYELYARRHF
Sbjct: 67 DLFARSSEAQGGVKKSTYMGFEKWWLPPAPVVKKPRSLYSAVSLAYLGDCIYELYARRHF 126
Query: 139 LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRR 198
FPPLSI EYN RVM VV+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++R
Sbjct: 127 FFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDFLTEEERDILRWGRNIVSSKTRTRKR 186
Query: 199 AGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSKL 251
AG AVYNRASSLETL GYLYLTN RLE +M +LGFT+G+S+Q I +E S
Sbjct: 187 AGIAVYNRASSLETLIGYLYLTNFKRLEQLMFQLGFTSGASSQHIADELRSSF 239
>gi|297789627|ref|XP_002862759.1| hypothetical protein ARALYDRAFT_333224 [Arabidopsis lyrata subsp.
lyrata]
gi|297308470|gb|EFH39017.1| hypothetical protein ARALYDRAFT_333224 [Arabidopsis lyrata subsp.
lyrata]
Length = 198
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 138/235 (58%), Gaps = 60/235 (25%)
Query: 17 SSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTSTDQ 76
+SS VRA+ DTQ RL YNPNAPRK+KK P N+NS S
Sbjct: 6 ASSTVRAALDTQPRLPYNPNAPRKVKKTP-----NNNSFLPP-------PSPPPSPGISI 53
Query: 77 SVFDLLKHP-TQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
SV DLLK P ++ + ++D++YMGYE W P+PPK+ KPRSVFNAASLA+IGD I+ELYAR
Sbjct: 54 SVADLLKRPASKELTVDVDDTYMGYETWSPSPPKLEKPRSVFNAASLAFIGDSIFELYAR 113
Query: 136 RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195
RHFLFPPLSIE+YN+RV AVVRCE Q ALL+KL++D +L+ EER
Sbjct: 114 RHFLFPPLSIEDYNDRVRAVVRCEAQYALLKKLVDDDFLTKEER---------------- 157
Query: 196 KRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEANSK 250
++M KLGF++ SST++++EEA K
Sbjct: 158 -------------------------------EIMQKLGFSSDSSTEIVIEEAKPK 181
>gi|145325433|ref|NP_001077721.1| Ribonuclease III-like protein [Arabidopsis thaliana]
gi|332195070|gb|AEE33191.1| Ribonuclease III-like protein [Arabidopsis thaliana]
Length = 170
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 123/174 (70%), Gaps = 10/174 (5%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS SS+ VRA+ DTQ +L YNPNAPR +KK NSN S P+S+ T+
Sbjct: 4 LSASSTIVRAALDTQPKLRYNPNAPRNVKK---------NSNLSSFVPPSSPSSSSPATN 54
Query: 74 TDQSVFDLLKHPTQGVVAN-LDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYEL 132
SV DLLK P + + D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE+
Sbjct: 55 LSVSVSDLLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEI 114
Query: 133 YARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGK 186
YARRHFLFPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+ +ER + G+
Sbjct: 115 YARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERSIYFGGE 168
>gi|12321576|gb|AAG50839.1|AC073944_6 unknown protein [Arabidopsis thaliana]
Length = 305
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 109/133 (81%), Gaps = 2/133 (1%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
F SLA +G +YARRHFLFPPLSIEEYN+RV AVVRCE Q ALLQKL++D +L+
Sbjct: 169 FLYLSLAVLG--CKNIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTK 226
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
+ERD++RWGKNVGS TR+ RRAG AVYN+ASSLETL GYLYL+N RLE++M KLGF++
Sbjct: 227 DERDILRWGKNVGSVKTRSTRRAGVAVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSS 286
Query: 237 GSSTQMILEEANS 249
GSST+ +++EA S
Sbjct: 287 GSSTERMVKEAGS 299
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 10/119 (8%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS SS+ VRA+ DTQ +L YNPNAPR +KK NSN S P+S+ T+
Sbjct: 4 LSASSTIVRAALDTQPKLRYNPNAPRNVKK---------NSNLSSFVPPSSPSSSSPATN 54
Query: 74 TDQSVFDLLKHPTQGVVAN-LDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYE 131
SV DLLK P + + D++ +GYE+W P+PPKV KPRSVFNAASLAYIGD IYE
Sbjct: 55 LSVSVSDLLKRPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYE 113
>gi|194692318|gb|ACF80243.1| unknown [Zea mays]
gi|414875844|tpg|DAA52975.1| TPA: hypothetical protein ZEAMMB73_241035 [Zea mays]
gi|414875845|tpg|DAA52976.1| TPA: hypothetical protein ZEAMMB73_241035 [Zea mays]
Length = 213
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 105/135 (77%), Gaps = 1/135 (0%)
Query: 80 DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHF 138
DL ++ +YMG+E+W LP P V KPRS+++A SLAY+GDCIYELYARRHF
Sbjct: 67 DLFARSSEAQGGVKKSTYMGFEKWWLPPAPVVKKPRSLYSAVSLAYLGDCIYELYARRHF 126
Query: 139 LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRR 198
FPPLSI EYN RVM VV+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++R
Sbjct: 127 FFPPLSINEYNKRVMDVVKCESQDLLLNKLLGEDFLTEEERDILRWGRNIVSSKTRTRKR 186
Query: 199 AGAAVYNRASSLETL 213
AG AVYNRASSLETL
Sbjct: 187 AGIAVYNRASSLETL 201
>gi|168012988|ref|XP_001759183.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689496|gb|EDQ75867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 154
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 106/141 (75%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
WLP+PP V KPR+V NAASLAY+GD IYE+Y RRHFL PP ++ YN RVM +V CE QD
Sbjct: 1 WLPSPPPVEKPRAVHNAASLAYLGDSIYEVYVRRHFLTPPQKVDVYNKRVMDLVCCEAQD 60
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
A+LQ+LL +L+ EERDVVRWGKN+ + R RRAG+ Y+ AS+LETL GYLYLT+
Sbjct: 61 AMLQQLLKGDFLTDEERDVVRWGKNIETGQRRASRRAGSKAYSSASALETLIGYLYLTDH 120
Query: 223 NRLEDVMSKLGFTNGSSTQMI 243
RLE++M+K+GF S+ I
Sbjct: 121 PRLEELMTKVGFNVDSNFSHI 141
>gi|222631102|gb|EEE63234.1| hypothetical protein OsJ_18044 [Oryza sativa Japonica Group]
Length = 202
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 106/150 (70%), Gaps = 23/150 (15%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
MG+ERW LP PP ELYARRHF FPPLSI +YN RVM VV
Sbjct: 69 MGFERWWLPPPP----------------------ELYARRHFFFPPLSINDYNKRVMDVV 106
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
+CE+QD LL KLL + +L+ EERD++RWG+N+ S+ TRT++RAG AVYNRASSLETL GY
Sbjct: 107 KCESQDLLLNKLLGEDFLTQEERDILRWGRNIVSSKTRTRKRAGIAVYNRASSLETLIGY 166
Query: 217 LYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
LYLTN RLE +M +LGFT+G+S+ I +E
Sbjct: 167 LYLTNFKRLEQLMFQLGFTSGASSHHIADE 196
>gi|449476900|ref|XP_004154870.1| PREDICTED: uncharacterized LOC101205919 [Cucumis sativus]
Length = 174
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 119/169 (70%), Gaps = 14/169 (8%)
Query: 14 LSLSSSRVRASFDTQQRLSYNPNAPRKIKKPPLNLNTNSNSNKSDVAIAKPPTSTVTPTS 73
LS +S+ + AS+DTQQRLSYNPNAPR K P + + + S + A T T T
Sbjct: 4 LSATSTSIVASWDTQQRLSYNPNAPRNPNKKPKSPSFSPTSQATGNA-----TLTATNIR 58
Query: 74 TDQSVFDLL--KHPTQGVVANLDES---YMGYERWLPNPPKVGKPRSVFNAASLAYIGDC 128
T+Q V DLL ++P+ L+E Y+GY++WLP+PPKV KPRSVFNAASLAYIGDC
Sbjct: 59 TNQIVSDLLNRRNPSSTEGCKLEEPDGLYLGYDQWLPDPPKVQKPRSVFNAASLAYIGDC 118
Query: 129 IYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD----ALLQKLLNDSY 173
IYELYARRHFLFPPLSIEEYN+RVMAVVRCE Q +L++++N +
Sbjct: 119 IYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQTPQGLKVLEEIINQKH 167
>gi|302780898|ref|XP_002972223.1| hypothetical protein SELMODRAFT_97450 [Selaginella moellendorffii]
gi|300159690|gb|EFJ26309.1| hypothetical protein SELMODRAFT_97450 [Selaginella moellendorffii]
Length = 163
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 104/131 (79%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
+P + PR+ NAA+LAY+GD +YELY RRHFL PP S+++YN VMAVV CE QD+
Sbjct: 1 VPQANAIQNPRATHNAAALAYLGDAVYELYVRRHFLTPPQSMDKYNACVMAVVCCEAQDS 60
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
LLQ++L +LS EERDVVRWGKNV +A++R +RAG+AVY+ AS+LETL G+LYL + +
Sbjct: 61 LLQEVLKGKFLSQEERDVVRWGKNVVTAHSRATKRAGSAVYSGASALETLIGFLYLRDPS 120
Query: 224 RLEDVMSKLGF 234
RL+++M+KLGF
Sbjct: 121 RLDELMTKLGF 131
>gi|302804771|ref|XP_002984137.1| hypothetical protein SELMODRAFT_119664 [Selaginella moellendorffii]
gi|300147986|gb|EFJ14647.1| hypothetical protein SELMODRAFT_119664 [Selaginella moellendorffii]
Length = 163
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 105/131 (80%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
+P+ + PR+ NAA+LAY+GD +YELY RRHFL PP S+++YN VMAVV CE QD+
Sbjct: 1 VPSTSTIQNPRATHNAAALAYLGDAVYELYVRRHFLTPPQSMDKYNACVMAVVCCEAQDS 60
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
LLQ++L +L+ EERDVVRWGKNV +A++R +RAG+AVY+ AS+LETL G+LYL + +
Sbjct: 61 LLQEVLKGKFLTQEERDVVRWGKNVVTAHSRATKRAGSAVYSGASALETLIGFLYLRDPS 120
Query: 224 RLEDVMSKLGF 234
RL+++M+KLGF
Sbjct: 121 RLDELMTKLGF 131
>gi|449515712|ref|XP_004164892.1| PREDICTED: uncharacterized LOC101205919 [Cucumis sativus]
Length = 117
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 81/111 (72%), Gaps = 12/111 (10%)
Query: 138 FLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN-TRTK 196
FL PP +E N D LLQKLLND++L+ ERD++RWGKNVGS++ TRTK
Sbjct: 11 FLNPPSKKQETGN-----------DVLLQKLLNDNFLTEAERDILRWGKNVGSSSKTRTK 59
Query: 197 RRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSSTQMILEEA 247
+RAGAAVYNRASSLETL GYLYL N RL+++M KLGF+ SS QMI EE+
Sbjct: 60 KRAGAAVYNRASSLETLIGYLYLNNVKRLDEIMQKLGFSTDSSLQMISEES 110
>gi|116792478|gb|ABK26384.1| unknown [Picea sitchensis]
Length = 96
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 69/82 (84%)
Query: 153 MAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLET 212
MA+V CE QD LL++LL D +LS EERDV+RWG+N+ S TRT RRAGAAVY+RASSLET
Sbjct: 1 MALVCCEAQDTLLKELLKDDFLSEEERDVIRWGRNIQSGKTRTTRRAGAAVYSRASSLET 60
Query: 213 LAGYLYLTNANRLEDVMSKLGF 234
L GYLYLT+ANRL+ VM KLGF
Sbjct: 61 LVGYLYLTDANRLDTVMRKLGF 82
>gi|332706004|ref|ZP_08426077.1| hypothetical protein LYNGBM3L_13630 [Moorea producens 3L]
gi|332355264|gb|EGJ34731.1| hypothetical protein LYNGBM3L_13630 [Moorea producens 3L]
Length = 162
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 90/133 (67%), Gaps = 6/133 (4%)
Query: 100 YERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCE 159
+ +++ ++ K + + + ASLAYIGD +YELY R H+L PP I +Y+N+V+A VR E
Sbjct: 31 FRQFMAKVDQIAKIQQI-SPASLAYIGDAVYELYIRTHYLLPPRRICDYHNQVVAHVRAE 89
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+Q +L+ L + YL+A E+DV+R G+N A T+T RR +Y +ASSLETL GYLYL
Sbjct: 90 SQAKILRSL--EPYLTASEKDVLRRGRN---AATKTPRRLNREIYQQASSLETLLGYLYL 144
Query: 220 TNANRLEDVMSKL 232
T+ RL +++ L
Sbjct: 145 TDTQRLTQLLAHL 157
>gi|384251757|gb|EIE25234.1| ribonuclease III [Coccomyxa subellipsoidea C-169]
Length = 211
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 86/141 (60%), Gaps = 6/141 (4%)
Query: 105 PNPPKVGKP-RSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
P P GK R+ +NA +LA++GD ++ELY RRHF FPP + Y V + VR ETQ+
Sbjct: 62 PVPNLEGKDVRANWNATALAFLGDSVWELYVRRHFFFPPGRLTTYYEGVTSQVRAETQET 121
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAG---AAVYNRASSLETLAGYLYLT 220
Q LL+ +++ EER+++RWG+N N + +A A Y A+++E LAGYLYLT
Sbjct: 122 HYQLLLSGKFITEEEREILRWGRNA-KVNVPPRFKASGKHAETYKHATAMECLAGYLYLT 180
Query: 221 NANRLEDVMSKLGFTNGSSTQ 241
N RL +M LG GSS Q
Sbjct: 181 NPERLHALMDYLGL-GGSSQQ 200
>gi|172036715|ref|YP_001803216.1| putative ribonuclease III [Cyanothece sp. ATCC 51142]
gi|354554529|ref|ZP_08973833.1| ribonuclease III [Cyanothece sp. ATCC 51472]
gi|171698169|gb|ACB51150.1| putative Ribonuclease III [Cyanothece sp. ATCC 51142]
gi|353553338|gb|EHC22730.1| ribonuclease III [Cyanothece sp. ATCC 51472]
Length = 137
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 5/118 (4%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
S + A LAYIGD +YELY R +LFPP + +Y+N+V+A VR ETQ LQ+L YL
Sbjct: 23 SQLSPAFLAYIGDAVYELYVRTSYLFPPRKVRDYHNQVVAQVRAETQAKALQRL--TPYL 80
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+ E+D+VR G+N A T RR +Y +A+SLETL GYLYL + +RL +++ L
Sbjct: 81 TTVEQDIVRRGRN---AATGCPRRLQPEIYQQATSLETLIGYLYLQDTHRLRELLETL 135
>gi|218247221|ref|YP_002372592.1| ribonuclease III [Cyanothece sp. PCC 8801]
gi|257061444|ref|YP_003139332.1| ribonuclease III [Cyanothece sp. PCC 8802]
gi|218167699|gb|ACK66436.1| ribonuclease III [Cyanothece sp. PCC 8801]
gi|256591610|gb|ACV02497.1| ribonuclease III [Cyanothece sp. PCC 8802]
Length = 158
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
+P K+ V + A LAY+GD +YELY R ++L PP + +Y+N+V++ VR ETQ ALL
Sbjct: 32 DPSKISSIGQV-SPAFLAYLGDAVYELYIRTYYLLPPRRLVDYHNQVVSFVRAETQAALL 90
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRL 225
+ L YL+ ER++VR G+N A T RR +Y +A+SLETL GYLYL N RL
Sbjct: 91 EYL--KPYLTDAEREIVRRGRN---AATGKPRRLSPEIYQQATSLETLIGYLYLHNQGRL 145
Query: 226 EDVMSKLGFTN 236
++ KL +
Sbjct: 146 TQLLEKLNLSQ 156
>gi|126656121|ref|ZP_01727505.1| hypothetical protein CY0110_03524 [Cyanothece sp. CCY0110]
gi|126622401|gb|EAZ93107.1| hypothetical protein CY0110_03524 [Cyanothece sp. CCY0110]
Length = 137
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
S + A LAYIGD +YELY R +LFPP + +Y+N+V+A VR ETQ LQ+L YL
Sbjct: 23 SQLSPAFLAYIGDAVYELYVRTSYLFPPRKVRDYHNQVVAQVRAETQAKALQRL--TPYL 80
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
+ E+D+VR G+N A T RR +Y +A+SLETL GYLYL + +RL +++
Sbjct: 81 TTVEQDIVRRGRN---AATGCPRRLQPEIYQQATSLETLIGYLYLQDTHRLHELLE 133
>gi|307150691|ref|YP_003886075.1| ribonuclease III [Cyanothece sp. PCC 7822]
gi|306980919|gb|ADN12800.1| ribonuclease III [Cyanothece sp. PCC 7822]
Length = 131
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKL 168
K+G+ + ASLAYIGD +YELY R +L PP + +Y+N+V+A VR E Q A LQ L
Sbjct: 15 KIGQ----ISPASLAYIGDAVYELYVRTRYLLPPRRLCDYHNQVVAKVRAEQQAAYLQVL 70
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDV 228
+ +L+ ER++VR G+N +AN R RR +Y +ASSLETL GYLYL N RL ++
Sbjct: 71 --EPHLTESEREIVRQGRN--AANGRP-RRLSPELYQQASSLETLIGYLYLQNPQRLNEL 125
Query: 229 MSKLGF 234
+ L F
Sbjct: 126 LEILEF 131
>gi|434399206|ref|YP_007133210.1| ribonuclease III [Stanieria cyanosphaera PCC 7437]
gi|428270303|gb|AFZ36244.1| ribonuclease III [Stanieria cyanosphaera PCC 7437]
Length = 160
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 5/114 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD +YELY R +L PP + +Y+N+V+A VR E+Q LQ L YL+ E++
Sbjct: 45 ALAYIGDAVYELYVRTCYLIPPKRLADYHNQVVAQVRAESQADYLQLL--QPYLTFSEQE 102
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+VR G+N A + RR A +Y +A+S ETL GYLYLTN RL+++++KL
Sbjct: 103 IVRRGRN---AVDKKPRRISAQIYQQATSFETLLGYLYLTNPQRLDELLAKLKI 153
>gi|284928666|ref|YP_003421188.1| hypothetical protein UCYN_00750 [cyanobacterium UCYN-A]
gi|284809125|gb|ADB94830.1| uncharacterized conserved protein [cyanobacterium UCYN-A]
Length = 137
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAYIGD +YELY R +L PP + +Y+N+V+A VR ETQ A LQ+L YL+ E+
Sbjct: 29 AFLAYIGDAVYELYVRTAYLLPPRKLADYHNQVVAQVRAETQAAALQQL--QPYLTETEK 86
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D+VR G+N +++ RR VY +A+SLETL GYLYL ++ RL +++ L
Sbjct: 87 DIVRRGRNATNSHP---RRLKPEVYQQATSLETLIGYLYLQDSQRLNEILRNL 136
>gi|255071833|ref|XP_002499591.1| ribonuclease [Micromonas sp. RCC299]
gi|226514853|gb|ACO60849.1| ribonuclease [Micromonas sp. RCC299]
Length = 233
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 16/163 (9%)
Query: 85 PTQGVVANLDESYMGYE----RWL----PNPPKVGKPRSVFNAASLAYIGDCIYELYARR 136
PT G+ + D+ G E R++ PN + P+ ++ S A++GD ++ELY RR
Sbjct: 57 PTWGLDLDSDDGVEGVEPPQGRFVAPIPPNDVHLKSPKQ-WSPVSFAFLGDAVWELYVRR 115
Query: 137 HFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN--DSYLSAEERDVVRWGKNVGSANT- 193
F PP +Y+ + R E QD +L+ L++ D + + EE VVRWG+N GSA
Sbjct: 116 AFFAPPCKPVDYDLKTKRAARAEAQDMVLRALMDEADPFFTEEELAVVRWGRNGGSAGNT 175
Query: 194 ----RTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
R K + G A+Y AS+LE + GYLY+++ +RL +M ++
Sbjct: 176 PSRLRGKNKGGFAIYRNASALECVVGYLYISDGDRLTQMMERV 218
>gi|170077012|ref|YP_001733650.1| ribonuclease III protein [Synechococcus sp. PCC 7002]
gi|169884681|gb|ACA98394.1| Ribonuclease III protein [Synechococcus sp. PCC 7002]
Length = 131
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
ASLAY+GD +YELY+R +FL PP I +Y+ +V+A VR ETQ L L + +LS ER
Sbjct: 17 ASLAYVGDAVYELYSRCYFLLPPCRIADYHGKVVAEVRAETQAQYLTLL--EPHLSELER 74
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D+VR G+N A T RR A+Y +A+ E L GYLYLTN RL ++ + L
Sbjct: 75 DIVRRGRN---AATGKPRRLSLAIYRQATGFEALVGYLYLTNPQRLAELFTCL 124
>gi|425461856|ref|ZP_18841330.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9808]
gi|389825209|emb|CCI25188.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9808]
Length = 138
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R H+L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTHYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|434394317|ref|YP_007129264.1| ribonuclease III [Gloeocapsa sp. PCC 7428]
gi|428266158|gb|AFZ32104.1| ribonuclease III [Gloeocapsa sp. PCC 7428]
Length = 158
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 94 DESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM 153
DE + E+ LP + + ++LAY+GD +YELY RR++L PP + Y+ V+
Sbjct: 17 DELTLKLEQLLPTLAEDLLQLQQASPSALAYLGDAVYELYIRRYYLLPPKRSQVYHRLVV 76
Query: 154 AVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETL 213
A VR E Q + L+ L YL++ E D+VR G+N A T+ +R +Y +ASSLETL
Sbjct: 77 AQVRAEAQASHLRSL--TPYLTSTELDIVRRGRN---ATTKPPKRIEPEIYQQASSLETL 131
Query: 214 AGYLYLTNANRLEDVMSKLGFTNGS 238
GYL+LT+ RL ++ KL F
Sbjct: 132 VGYLFLTDCQRLAQLLHKLDFEQNQ 156
>gi|218440134|ref|YP_002378463.1| ribonuclease III [Cyanothece sp. PCC 7424]
gi|218172862|gb|ACK71595.1| ribonuclease III [Cyanothece sp. PCC 7424]
Length = 154
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAYIGD +YELY R +L PP + +Y+++V+A VR E Q A LQ L + YL+
Sbjct: 42 LSPASLAYIGDAVYELYVRSVYLLPPRRLSDYHSQVVAQVRAEQQAAHLQTL--EPYLTE 99
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
E+++VR G+N A T RR +Y +A+SLETL GYLYL + RL ++ L
Sbjct: 100 TEQEIVRQGRN---AATGRPRRLSPKLYQQATSLETLIGYLYLQDPQRLTQLLEYLEL 154
>gi|443327797|ref|ZP_21056406.1| hypothetical protein Xen7305DRAFT_00018210 [Xenococcus sp. PCC
7305]
gi|442792632|gb|ELS02110.1| hypothetical protein Xen7305DRAFT_00018210 [Xenococcus sp. PCC
7305]
Length = 152
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YEL R L PP I +Y+++V+A VR E Q LQ L + YL+ E+
Sbjct: 43 VALAYIGDAVYELIVRAKLLLPPKRIADYHSQVVAQVRAEAQATHLQDL--EPYLTPAEK 100
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+++R G+N A T RR +Y +ASS ETL GYLYL ++ RL+D+ +KL
Sbjct: 101 EILRRGRN---AVTNKPRRLSMKIYQQASSFETLIGYLYLEDSQRLQDLFTKLNL 152
>gi|303277873|ref|XP_003058230.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460887|gb|EEH58181.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 123 AYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
A++GD ++ELY RR F PP Y+ + VR E QD +L+KL++ + + EE VV
Sbjct: 1 AFLGDAVWELYVRRLFFAPPTRPRTYDLKCKRAVRAEAQDVVLRKLVDRGFFTDEEMKVV 60
Query: 183 RWGKNVGSANTRTKRR-----AGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
+WG+N N T+ R G A Y AS+LE + GYLY+T++ RLE +M+ LG
Sbjct: 61 KWGRNASYGNVPTRLRGKNGKGGFATYRNASALECVVGYLYMTDSARLETMMATLG 116
>gi|425436460|ref|ZP_18816896.1| Ribonuclease III [Microcystis aeruginosa PCC 9432]
gi|389678830|emb|CCH92352.1| Ribonuclease III [Microcystis aeruginosa PCC 9432]
Length = 138
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALELAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|428203165|ref|YP_007081754.1| hypothetical protein Ple7327_2958 [Pleurocapsa sp. PCC 7327]
gi|427980597|gb|AFY78197.1| hypothetical protein Ple7327_2958 [Pleurocapsa sp. PCC 7327]
Length = 152
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 5/108 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAYIGD +YELY R +L PP + +Y++RV+A VR E+Q A L+ L +SYL+
Sbjct: 39 LSPASLAYIGDAVYELYVRTRYLLPPKRLSDYHDRVVAQVRAESQAACLRVL--ESYLTD 96
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
EER+++R G+N A T RR ++ +A+SLETL GYLYL N R
Sbjct: 97 EEREILRRGRN---AATGKPRRLSPELHQQATSLETLIGYLYLQNPQR 141
>gi|425471153|ref|ZP_18850013.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9701]
gi|389883013|emb|CCI36576.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9701]
Length = 138
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRSYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|390437764|ref|ZP_10226283.1| Similar to tr|P74327|P74327 [Microcystis sp. T1-4]
gi|389838804|emb|CCI30407.1| Similar to tr|P74327|P74327 [Microcystis sp. T1-4]
Length = 138
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|422303369|ref|ZP_16390720.1| Ribonuclease III [Microcystis aeruginosa PCC 9806]
gi|425451335|ref|ZP_18831157.1| Ribonuclease III [Microcystis aeruginosa PCC 7941]
gi|440753210|ref|ZP_20932413.1| RNase3 domain protein [Microcystis aeruginosa TAIHU98]
gi|389767414|emb|CCI07180.1| Ribonuclease III [Microcystis aeruginosa PCC 7941]
gi|389791640|emb|CCI12539.1| Ribonuclease III [Microcystis aeruginosa PCC 9806]
gi|440177703|gb|ELP56976.1| RNase3 domain protein [Microcystis aeruginosa TAIHU98]
Length = 138
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|425446611|ref|ZP_18826614.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9443]
gi|389733090|emb|CCI03098.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9443]
Length = 138
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|425457654|ref|ZP_18837352.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9807]
gi|443648573|ref|ZP_21130042.1| RNase3 domain protein [Microcystis aeruginosa DIANCHI905]
gi|159029967|emb|CAO90346.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389800917|emb|CCI19837.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9807]
gi|443335160|gb|ELS49639.1| RNase3 domain protein [Microcystis aeruginosa DIANCHI905]
Length = 138
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 QEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|425443353|ref|ZP_18823573.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9717]
gi|389715369|emb|CCI00249.1| Similar to tr|P74327|P74327 [Microcystis aeruginosa PCC 9717]
Length = 138
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 75/113 (66%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+ +E+
Sbjct: 29 ASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTDQEK 86
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 87 EILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|166365582|ref|YP_001657855.1| ribonuclease III [Microcystis aeruginosa NIES-843]
gi|425467410|ref|ZP_18846693.1| Ribonuclease III [Microcystis aeruginosa PCC 9809]
gi|166087955|dbj|BAG02663.1| ribonuclease III [Microcystis aeruginosa NIES-843]
gi|389829832|emb|CCI28532.1| Ribonuclease III [Microcystis aeruginosa PCC 9809]
Length = 138
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ASLAY+GD +YELY R ++L PP + +Y+ +V+ VR E Q L +L YL+
Sbjct: 26 LSPASLAYLGDAVYELYIRTYYLLPPQRLGDYHAQVVGKVRAEQQALDLAQL--QPYLTD 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+E++++R G+N A T +RR A VY +ASSLETL GYLYL + +RL ++ KL
Sbjct: 84 KEKEILRRGRN---AVTGKRRRLTAQVYQQASSLETLFGYLYLQDPSRLHQLLEKL 136
>gi|254413773|ref|ZP_05027542.1| RNase3 domain protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196179370|gb|EDX74365.1| RNase3 domain protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 155
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAY+GD +YELY RRH+L PP + +Y+++V+A VR E+Q L+ L + YL+ E
Sbjct: 43 AALAYLGDAVYELYIRRHYLLPPKRLCDYHDQVVAQVRAESQANTLRSL--EPYLTEPEL 100
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
++R G+N A T T RR +Y +A+SLETL GYLYLT+ RL +++ L
Sbjct: 101 ALLRRGRN---AATGTSRRLNRKIYQQATSLETLLGYLYLTDPQRLTQLLAYL 150
>gi|411120572|ref|ZP_11392944.1| hypothetical protein OsccyDRAFT_4553 [Oscillatoriales
cyanobacterium JSC-12]
gi|410709241|gb|EKQ66756.1| hypothetical protein OsccyDRAFT_4553 [Oscillatoriales
cyanobacterium JSC-12]
Length = 159
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD +YEL+ RR +L PP I+ Y+ +V+A VR E Q LQ L+ L+
Sbjct: 41 LSPAALAYLGDAVYELFVRRFYLTPPKRIQIYHQQVVAQVRAEAQARHLQLLIPQ--LTQ 98
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
E D ++ G+N + T RR +Y +A+SLETL GYLYLTN +RL ++S L FT
Sbjct: 99 VELDWLKRGRN---STTGRPRRLDPDIYQQATSLETLVGYLYLTNPDRLFSLLSSLEFT 154
>gi|428227214|ref|YP_007111311.1| ribonuclease III [Geitlerinema sp. PCC 7407]
gi|427987115|gb|AFY68259.1| ribonuclease III [Geitlerinema sp. PCC 7407]
Length = 167
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ +LAY+GD +YEL+ R +L PP I+ Y++ V+ VR E Q LQ L + Y +
Sbjct: 44 LSPVALAYLGDAVYELFVRTRYLMPPRRIQTYHHEVVDQVRAERQAEYLQSL--EPYFTP 101
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
EE D+++ G+N + RTK R +Y +ASSLETL GYLYLT+ RL ++S L F
Sbjct: 102 EELDILKRGRNAVPSG-RTK-RVSPEIYQQASSLETLMGYLYLTDPARLFQLLSYLPFEA 159
Query: 237 GSS 239
SS
Sbjct: 160 KSS 162
>gi|67924214|ref|ZP_00517654.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
gi|67853933|gb|EAM49252.1| Ribonuclease III [Crocosphaera watsonii WH 8501]
Length = 137
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAYIGD +YELY R +L PP + Y+N+V+A VR ETQ LQKL L+ E+
Sbjct: 28 AFLAYIGDAVYELYVRTCYLLPPRKVGVYHNQVVAQVRAETQAKALQKL--TPLLTTVEQ 85
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D+VR G+N A T RR +Y +A+SLETL GYLYL + RL ++++ L
Sbjct: 86 DIVRRGRN---AATGCPRRLKPEIYQQATSLETLIGYLYLRDTERLSELLNIL 135
>gi|443310385|ref|ZP_21040039.1| hypothetical protein Syn7509DRAFT_00035070 [Synechocystis sp. PCC
7509]
gi|442779541|gb|ELR89780.1| hypothetical protein Syn7509DRAFT_00035070 [Synechocystis sp. PCC
7509]
Length = 156
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAYIGD +YELY R ++L PP + Y+ V+A VR ETQ L L+ + L+A E
Sbjct: 40 AALAYIGDAVYELYIRANYLLPPKTAHAYHQLVVAQVRAETQALQLASLV--TCLTATEL 97
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++VR G+N A R +R A +Y +A+SLE L GYLYLTN RL ++ KL
Sbjct: 98 EIVRRGRN---AANRPPKRVDAEIYGQATSLEALIGYLYLTNFPRLSQLLQKLNL 149
>gi|416402442|ref|ZP_11687391.1| cysteinyl-tRNA synthetase-like small protein [Crocosphaera watsonii
WH 0003]
gi|357261903|gb|EHJ11118.1| cysteinyl-tRNA synthetase-like small protein [Crocosphaera watsonii
WH 0003]
Length = 113
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAYIGD +YELY R +L PP + Y+N+V+A VR ETQ LQKL L+ E+
Sbjct: 4 AFLAYIGDAVYELYVRTCYLLPPRKVGVYHNQVVAQVRAETQAKALQKL--TPLLTTVEQ 61
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D+VR G+N A T RR +Y +A+SLETL GYLYL + RL ++++ L
Sbjct: 62 DIVRRGRN---AATGCPRRLKPEIYQQATSLETLIGYLYLRDTERLSELLNIL 111
>gi|220907355|ref|YP_002482666.1| ribonuclease III [Cyanothece sp. PCC 7425]
gi|219863966|gb|ACL44305.1| ribonuclease III [Cyanothece sp. PCC 7425]
Length = 153
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD +YELY R L PP + +Y+ RV+A VR E Q L+ L +LS
Sbjct: 34 LSPAALAYLGDAVYELYIRSRCLLPPQRLRDYHQRVVAHVRAEAQAEYLRSL--RPHLSN 91
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
+E +++R G+N SA +R Y +A+SLETL GYLYLTN +RL +++ L T
Sbjct: 92 QELNLLRQGRNAASAG---PKRVDPETYQQATSLETLLGYLYLTNPDRLNELLQSLDLT 147
>gi|427709001|ref|YP_007051378.1| ribonuclease III [Nostoc sp. PCC 7107]
gi|427361506|gb|AFY44228.1| ribonuclease III [Nostoc sp. PCC 7107]
Length = 160
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAYIGD IYELYAR +L P +E Y+ V+A VR ETQ L+ L+ +L
Sbjct: 45 ISPAALAYIGDAIYELYARISYLLPLQRLETYHRLVVAQVRAETQALHLRSLI--PHLRE 102
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
E ++VR G+N A+T +R +Y +A+SLETL GYLYLT+ RL +++ KL
Sbjct: 103 AELEIVRRGRN---ASTGRPKRLAPEIYQQATSLETLIGYLYLTDIPRLTELLQKLHL 157
>gi|16331013|ref|NP_441741.1| hypothetical protein slr0954 [Synechocystis sp. PCC 6803]
gi|383322756|ref|YP_005383609.1| hypothetical protein SYNGTI_1847 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325925|ref|YP_005386778.1| hypothetical protein SYNPCCP_1846 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491809|ref|YP_005409485.1| hypothetical protein SYNPCCN_1846 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437076|ref|YP_005651800.1| hypothetical protein SYNGTS_1847 [Synechocystis sp. PCC 6803]
gi|451815171|ref|YP_007451623.1| hypothetical protein MYO_118640 [Synechocystis sp. PCC 6803]
gi|81671289|sp|P74327.1|MRNC_SYNY3 RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|1653508|dbj|BAA18421.1| slr0954 [Synechocystis sp. PCC 6803]
gi|339274108|dbj|BAK50595.1| hypothetical protein SYNGTS_1847 [Synechocystis sp. PCC 6803]
gi|359272075|dbj|BAL29594.1| hypothetical protein SYNGTI_1847 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275245|dbj|BAL32763.1| hypothetical protein SYNPCCN_1846 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278415|dbj|BAL35932.1| hypothetical protein SYNPCCP_1846 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961620|dbj|BAM54860.1| hypothetical protein BEST7613_5929 [Bacillus subtilis BEST7613]
gi|451781140|gb|AGF52109.1| hypothetical protein MYO_118640 [Synechocystis sp. PCC 6803]
Length = 143
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++ELY R +LFPP I +++ RV+A VR E Q +L LL L+ E++
Sbjct: 29 ALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQILTTLLPQ--LTDPEKE 86
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGS 238
VR G+N A T T RRA +Y AS LETL GYLYL +A RL+++++ + + +
Sbjct: 87 WVRRGRN---AATSTSRRANPELYQAASGLETLLGYLYLRDARRLDELLALIELPDAA 141
>gi|427417029|ref|ZP_18907212.1| hypothetical protein Lepto7375DRAFT_2718 [Leptolyngbya sp. PCC
7375]
gi|425759742|gb|EKV00595.1| hypothetical protein Lepto7375DRAFT_2718 [Leptolyngbya sp. PCC
7375]
Length = 154
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD ++ELY R FL+PP I+ ++ +V++ V+ E Q A L++L +L E D
Sbjct: 41 ALAYIGDAVFELYVRMQFLWPPQRIQMFHQQVVSQVKAEQQAAYLEQL--TPHLRDVEAD 98
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
+VR G+N A ++ RR A +Y ++++ E L GYLY+T+ RL +++ L T+
Sbjct: 99 IVRRGRN---ATSKAPRRLSAKIYRQSTAFEALVGYLYITDQPRLCELLKHLSVTS 151
>gi|428298243|ref|YP_007136549.1| ribonuclease III [Calothrix sp. PCC 6303]
gi|428234787|gb|AFZ00577.1| ribonuclease III [Calothrix sp. PCC 6303]
Length = 160
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 5/114 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAY+GD +YELY R +L PP +++Y+N V+A VR ETQ L+ L+ +L + E +
Sbjct: 49 SLAYLGDAVYELYVRTFYLLPPSRVDQYHNLVVAQVRAETQALHLRSLI--PHLLSGELE 106
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+VR G+N A T +R +Y +A+S E L GYL+LT+ RL +++ KL
Sbjct: 107 IVRRGRN---AATGIPKRLDPQIYQQATSFEALIGYLFLTDETRLTELLQKLNL 157
>gi|119487910|ref|ZP_01621407.1| Ribonuclease III [Lyngbya sp. PCC 8106]
gi|119455486|gb|EAW36624.1| Ribonuclease III [Lyngbya sp. PCC 8106]
Length = 130
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 112 KPRSV--FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLL 169
KP V + AS AY+GD +YELY R +L PP + Y+ V++ VR ETQ L+ L
Sbjct: 7 KPEQVQQLSPASWAYLGDAVYELYIRHFYLIPPKRSQLYHQLVVSQVRAETQARHLRSL- 65
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ YLS E +VVR G+N A + +R Y A+SLETL GYLYLT+ RL ++
Sbjct: 66 -EPYLSTAELEVVRRGRN---AAVKGPKRIDQQTYQLATSLETLVGYLYLTDPERLSQLL 121
Query: 230 SKLGFTNGS 238
++L + S
Sbjct: 122 AQLDLNSES 130
>gi|434389415|ref|YP_007100026.1| hypothetical protein Cha6605_5628 [Chamaesiphon minutus PCC 6605]
gi|428020405|gb|AFY96499.1| hypothetical protein Cha6605_5628 [Chamaesiphon minutus PCC 6605]
Length = 144
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD +YELY R FLFPP +Y+ +V+A VR E Q + LQ LL +L++
Sbjct: 26 LSPAALAYLGDAVYELYVRTRFLFPPKRSHDYHRQVVAQVRAEAQSSHLQLLL--PHLTS 83
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
E D +R G+N S RR VY +A+S ETL GYL++T+ R
Sbjct: 84 VELDAIRRGRNAASGR---PRRLDPEVYQQATSFETLIGYLHITDPPR 128
>gi|428219068|ref|YP_007103533.1| ribonuclease III [Pseudanabaena sp. PCC 7367]
gi|427990850|gb|AFY71105.1| ribonuclease III [Pseudanabaena sp. PCC 7367]
Length = 132
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAYIGD IYEL+ R +FL PP S +EY+ V++ V+ ++Q L KL+++ +LS E
Sbjct: 19 AALAYIGDAIYELHVRLNFLTPPRSPKEYHQLVVSRVKAQSQANQLNKLIDNQFLSELEL 78
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
D+VR G+N A T T R Y AS E L GYLYL + +RL ++++
Sbjct: 79 DLVRRGRN---ATTSTPRHINPQTYRLASGFEALIGYLYLKDPDRLVQILAQ 127
>gi|354564972|ref|ZP_08984148.1| ribonuclease III [Fischerella sp. JSC-11]
gi|353550098|gb|EHC19537.1| ribonuclease III [Fischerella sp. JSC-11]
Length = 160
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 5/118 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD +YELY R ++L PP E Y+ V+A VR ETQ L+ L +L
Sbjct: 46 LSPAALAYLGDAVYELYVRMYYLLPPQRSESYHRLVVAQVRAETQALHLRSL--TPHLRH 103
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
E ++VR G+N A T +R +Y +ASSLETL GYLYLT+ RL +++ +L
Sbjct: 104 SELEIVRRGRN---ATTGRPKRLDPEIYQQASSLETLIGYLYLTDQPRLAELLQRLQL 158
>gi|359461746|ref|ZP_09250309.1| ribonuclease III domain-containing protein [Acaryochloris sp. CCMEE
5410]
Length = 143
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 114 RSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
RSV + A+LAYIGD ++ELY RR+ L PP + +Y+ +V++ VR ETQ +++ L
Sbjct: 21 RSV-SPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVSYVRAETQAEMVRDLY--PL 77
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
LS +E+ +++ G+N + +R Y A+ E L GYLYLT+ RLED+++++
Sbjct: 78 LSDDEQAILKQGRNAAAGG---PKRINLETYQYATGFEALIGYLYLTDTTRLEDLLAQIK 134
Query: 234 FTNGS 238
F S
Sbjct: 135 FDRSS 139
>gi|427713150|ref|YP_007061774.1| hypothetical protein Syn6312_2110 [Synechococcus sp. PCC 6312]
gi|427377279|gb|AFY61231.1| hypothetical protein Syn6312_2110 [Synechococcus sp. PCC 6312]
Length = 150
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
Query: 99 GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRC 158
GY +P P + P + A+ AY+GD IYEL+ R L PP + +Y+ RV+ V+
Sbjct: 9 GYPLLIPGPGRQSAPHQ-YPPAAWAYLGDSIYELFIRSLCLNPPRRMGDYHRRVVEHVKA 67
Query: 159 ETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
E+Q L +L +L+ +E +++R G+N +A +R A +Y +A+SLE L GYLY
Sbjct: 68 ESQAKYLHNIL--MHLTPQELEIIRQGRNAATAG---PKRVSAQIYQQATSLEALLGYLY 122
Query: 219 LTNANRLEDVMSKL 232
++ NRL ++++ L
Sbjct: 123 ISQPNRLTEILTLL 136
>gi|428208956|ref|YP_007093309.1| ribonuclease III [Chroococcidiopsis thermalis PCC 7203]
gi|428010877|gb|AFY89440.1| ribonuclease III [Chroococcidiopsis thermalis PCC 7203]
Length = 169
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YELY R HFL P + Y+N V+A VR E Q + L+ L YL+ E +
Sbjct: 45 ALAYLGDAVYELYVRSHFLLPHKRSQAYHNLVVAQVRAEAQASHLRYL--TPYLNQAELE 102
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N A RRA VY +A+SLE L GYLYL++ RL ++ +L
Sbjct: 103 IVRRGRN---ATVGRPRRAAPEVYQQATSLEALVGYLYLSDRQRLYQLLEQL 151
>gi|427738056|ref|YP_007057600.1| hypothetical protein Riv7116_4634 [Rivularia sp. PCC 7116]
gi|427373097|gb|AFY57053.1| hypothetical protein Riv7116_4634 [Rivularia sp. PCC 7116]
Length = 160
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 5/105 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
++LAY+GD +YEL+ RR++L PP ++ Y+ V+A VR E Q +L+ L D +L + E
Sbjct: 49 SALAYLGDAVYELFIRRYYLLPPQKVDNYHRLVVAQVRAEKQAEMLRLL--DPHLHSNEL 106
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
++VR G+N A T +R +Y +A+SLETL GYLYLTN R
Sbjct: 107 EIVRRGRN---AATGRPKRLDPQIYRQATSLETLIGYLYLTNTER 148
>gi|428308943|ref|YP_007119920.1| hypothetical protein Mic7113_0598 [Microcoleus sp. PCC 7113]
gi|428250555|gb|AFZ16514.1| hypothetical protein Mic7113_0598 [Microcoleus sp. PCC 7113]
Length = 156
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
ASLAY+GD +YELY R +L PP +Y+ +V+A VR E+Q +L+ L + +L+ E
Sbjct: 44 ASLAYLGDAVYELYIRTCYLLPPRRPCDYHQQVVAQVRAESQAKILRSL--EPHLTDPEL 101
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++R G+N + + RR +Y +A+SLETL GYLYLT+ RL +++ L
Sbjct: 102 QILRRGRNAATGH---PRRLDRKIYQQATSLETLLGYLYLTDPQRLTQLLAHLDL 153
>gi|414076051|ref|YP_006995369.1| ribonuclease 3 [Anabaena sp. 90]
gi|413969467|gb|AFW93556.1| ribonuclease 3 [Anabaena sp. 90]
Length = 159
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 81/135 (60%), Gaps = 10/135 (7%)
Query: 103 WLPNP---PKVGKPRSV--FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVR 157
WL N P+ P + + ++LAY+GD IYELY R +L+P ++ Y+ V+ VR
Sbjct: 26 WLVNATQLPQQISPAQIKQISPSALAYLGDAIYELYVRMFYLWPQQRLDNYHRSVVDQVR 85
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL 217
ETQ L+ L YL + E ++VR G+N SA +R K R +Y +A+SLETL GYL
Sbjct: 86 AETQALHLRML--TPYLRSNELEIVRRGRN--SATSRHK-RLNPEIYQQATSLETLVGYL 140
Query: 218 YLTNANRLEDVMSKL 232
YLT+ RL +++ KL
Sbjct: 141 YLTDYPRLTELLQKL 155
>gi|428774206|ref|YP_007165994.1| hypothetical protein Cyast_2399 [Cyanobacterium stanieri PCC 7202]
gi|428688485|gb|AFZ48345.1| hypothetical protein Cyast_2399 [Cyanobacterium stanieri PCC 7202]
Length = 162
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ SLAYIGD IYEL+ R H+L P I +++++V+ VR E+Q LQ + S L+
Sbjct: 50 ISPVSLAYIGDAIYELHVRTHYLLPHRKIADHHHQVVKQVRAESQAEHLQSIY--SILTE 107
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
EE+ V+ G+N S N ++ R+ +Y +A+ ETL GYLY+ N +RL+ +++++
Sbjct: 108 EEKTWVKRGRN--SVN-KSPRKLAPGIYQQATGFETLLGYLYIANPSRLDHILNQIKI 162
>gi|427730276|ref|YP_007076513.1| hypothetical protein Nos7524_3113 [Nostoc sp. PCC 7524]
gi|427366195|gb|AFY48916.1| hypothetical protein Nos7524_3113 [Nostoc sp. PCC 7524]
Length = 159
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAY+GD IYEL+AR ++L P E Y+ V+A VR ETQ L+ L YL E
Sbjct: 48 AALAYVGDAIYELHARMYYLLPLKKPEAYHRLVVAQVRAETQALHLRSL--TPYLLPNEL 105
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++VR G+N A T +R +Y +A+SLETL GYLYLTN RL +++ K+
Sbjct: 106 EIVRRGRN---AATGRPKRVNPEIYQQATSLETLIGYLYLTNFPRLTELLQKIHL 157
>gi|145348664|ref|XP_001418765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578995|gb|ABO97058.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 138
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LA++GD ++ELYAR F +PP EY+ + + R E QD LL+ L++ LS EE
Sbjct: 8 ALAFLGDAVFELYARGVFFYPPAKPLEYDLKTKRLARAEAQDFLLRLLIDGDALSEEEVS 67
Query: 181 VVRWGKNVGSANTRTK----RRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
+V+WG+N N T+ + G Y AS+LE L GYLY+ + RL++VM+
Sbjct: 68 IVKWGRNAAYGNIPTRLKGKGKGGHGTYRNASALECLVGYLYVVDRARLQEVMT 121
>gi|158338301|ref|YP_001519478.1| ribonuclease III domain-containing protein [Acaryochloris marina
MBIC11017]
gi|158308542|gb|ABW30159.1| ribonuclease III domain protein [Acaryochloris marina MBIC11017]
Length = 143
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 114 RSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
RSV + A+LAYIGD ++ELY RR+ L PP + +Y+ +V++ VR ETQ +++ L
Sbjct: 21 RSV-SPAALAYIGDAVFELYIRRYCLLPPSRLRDYHQKVVSYVRAETQAEMVRDLY--PL 77
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
LS +E+ +++ G+N + +R Y A+ E L GYLYLT+ RLE++++++
Sbjct: 78 LSDDEQAILKQGRNAAAGG---PKRINLETYQYATGFEALIGYLYLTDTTRLEELLAQIK 134
Query: 234 FTNGS 238
F S
Sbjct: 135 FDRSS 139
>gi|428210609|ref|YP_007083753.1| hypothetical protein Oscil6304_0074 [Oscillatoria acuminata PCC
6304]
gi|427998990|gb|AFY79833.1| hypothetical protein Oscil6304_0074 [Oscillatoria acuminata PCC
6304]
Length = 171
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 81/125 (64%), Gaps = 8/125 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YEL+ R +L PP + Y+N V++ VR ETQ +L+ L + +L+ E +
Sbjct: 52 ALAYLGDAVYELFIRAWYLRPPKRQKIYHNCVVSQVRAETQARMLRSL--EPFLTPTELE 109
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF---TNG 237
+++ G+N A T +R AA+Y +A+SLE+L GYLYLT+ NRL + ++L +G
Sbjct: 110 ILKRGRN---AATGGPKRVDAAIYQQATSLESLMGYLYLTDPNRLIYLFTQLNLEPVESG 166
Query: 238 SSTQM 242
ST++
Sbjct: 167 GSTEL 171
>gi|428220578|ref|YP_007104748.1| hypothetical protein Syn7502_00453 [Synechococcus sp. PCC 7502]
gi|427993918|gb|AFY72613.1| hypothetical protein Syn7502_00453 [Synechococcus sp. PCC 7502]
Length = 130
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAYIGD +YEL+ R ++L PP + Y+ V+A VR E Q L +L+ +L+ E D
Sbjct: 18 SLAYIGDAVYELHVRMYYLSPPRTASAYHQLVVAKVRAENQAKQLDRLIQTLFLNDAESD 77
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+V+ G+N A R A+Y +A+ ETL GYLYLT+ +RL + ++
Sbjct: 78 LVKRGRN---AAGYASRNIDPAIYQKATGFETLIGYLYLTDHDRLHQIFEQI 126
>gi|119511317|ref|ZP_01630431.1| Ribonuclease III [Nodularia spumigena CCY9414]
gi|119464023|gb|EAW44946.1| Ribonuclease III [Nodularia spumigena CCY9414]
Length = 172
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD IYELY R +L P + Y+ V+A VR ETQ L+ L +LS E +
Sbjct: 62 ALAYIGDAIYELYVRMFYLLPIQQTKTYHCLVVAQVRAETQALHLRSL--TPHLSPAELE 119
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+VR G+N S +R +Y +A+SLETL GYLYLT+ RL +++ KL
Sbjct: 120 IVRRGRNAASGR---PKRVDPKIYQQATSLETLIGYLYLTDFPRLTELLQKLHL 170
>gi|440683149|ref|YP_007157944.1| ribonuclease III [Anabaena cylindrica PCC 7122]
gi|428680268|gb|AFZ59034.1| ribonuclease III [Anabaena cylindrica PCC 7122]
Length = 160
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ ++LAY+GD IYELY R FL P E Y++ V+A VR ETQ L+ L + L +
Sbjct: 46 LSPSALAYLGDSIYELYVRMFFLLPQQRPEIYHSLVVAQVRAETQALHLRSLTPE--LRS 103
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
E ++VR G+N +A +R K R +Y +A+SLETL GYLYLT+ RL +++ KL
Sbjct: 104 NELEIVRRGRN--AATSRPK-RLNPEIYQQATSLETLVGYLYLTDYPRLMELLQKLHL 158
>gi|427725193|ref|YP_007072470.1| ribonuclease III [Leptolyngbya sp. PCC 7376]
gi|427356913|gb|AFY39636.1| ribonuclease III [Leptolyngbya sp. PCC 7376]
Length = 129
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YEL+ R H+L PP I ++ RV+A V+ ETQ A L + + L + E D
Sbjct: 18 ALAYVGDAVYELFIRCHYLTPPNRIRTHHQRVVAEVKAETQAAYLN--IWEPLLQSIELD 75
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N S +R +Y RA+ E L GYLYLTN RL ++ + L
Sbjct: 76 IVRRGRNTASGK---PKRVSIDIYRRATGFEALVGYLYLTNHGRLTELFALL 124
>gi|443476057|ref|ZP_21065981.1| ribonuclease III [Pseudanabaena biceps PCC 7429]
gi|443019015|gb|ELS33173.1| ribonuclease III [Pseudanabaena biceps PCC 7429]
Length = 131
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
++LAYIGD +YE+ R H+L PP + ++Y+ V++ VR E Q LL+KL L+ E
Sbjct: 16 SALAYIGDAVYEMQMRLHYLLPPRTAKQYHQLVVSQVRAEQQAKLLEKL----DLTDFES 71
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D+VR G+N + R+ +Y +A+ E L GYLYLT+ +RL+ + ++L
Sbjct: 72 DLVRRGRNAAGS---ISRKVDPNIYQKATGFEALIGYLYLTDRDRLDKIFTQL 121
>gi|298491202|ref|YP_003721379.1| ribonuclease III ['Nostoc azollae' 0708]
gi|298233120|gb|ADI64256.1| ribonuclease III ['Nostoc azollae' 0708]
Length = 159
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
LP P + + + + ++LAY+GD IYELY R FL P E Y+ V+A VR ETQ
Sbjct: 33 LPQPISQAQVQQI-SPSALAYLGDAIYELYVRIFFLLPQQRPESYHCLVVAQVRAETQAL 91
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+ L +L + E ++VR G+N A T +R +Y +A+SLETL GYLYLT+
Sbjct: 92 HLRSL--TPHLRSNELEIVRRGRN---AATGRPKRLNPEIYQQATSLETLVGYLYLTDYP 146
Query: 224 RLEDVMSKLGF 234
RL +++ K+
Sbjct: 147 RLIELLQKIHL 157
>gi|282899514|ref|ZP_06307478.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
gi|281195393|gb|EFA70326.1| Ribonuclease III [Cylindrospermopsis raciborskii CS-505]
Length = 157
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 5/116 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD IYELY R +L+P E Y++ V+A VR E Q + L+ L+ + L
Sbjct: 43 ISPAALAYLGDAIYELYVRMFYLWPQQRPEIYHSLVVAQVRAEKQASHLRSLIPE--LRN 100
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
E ++VR G+N A T +R +Y +A+SLETL GYLYLT+ RL +++ KL
Sbjct: 101 HELEIVRRGRN---AATGRPKRLDPEIYQQATSLETLVGYLYLTDYPRLTELLQKL 153
>gi|434402643|ref|YP_007145528.1| hypothetical protein Cylst_0509 [Cylindrospermum stagnale PCC 7417]
gi|428256898|gb|AFZ22848.1| hypothetical protein Cylst_0509 [Cylindrospermum stagnale PCC 7417]
Length = 163
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
++LAY+GD IYEL+ R +L P E Y+ V+A VR ETQ L+ L +L + E
Sbjct: 52 SALAYLGDAIYELHVRMFYLVPQQRSETYHRLVVAQVRAETQALHLRSL--TPHLRSNEL 109
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++VR G+N A R +R +Y +A+SLETL GYLYLT+ RL +++ K+
Sbjct: 110 EIVRRGRN---AAARHPKRVDPGIYQQATSLETLIGYLYLTDYQRLTELLQKIHL 161
>gi|427716430|ref|YP_007064424.1| ribonuclease III [Calothrix sp. PCC 7507]
gi|427348866|gb|AFY31590.1| ribonuclease III [Calothrix sp. PCC 7507]
Length = 159
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD IYELY R H+L P + Y+ V+A VR E Q L+ L YL+ E +
Sbjct: 49 ALAYMGDAIYELYVRMHYLLPLQRPDTYHRLVVAQVRAEKQALHLRSL--TPYLNNNELE 106
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+VR G+N A+T +R +Y +A+SLETL GYLYL++ RL +++ KL
Sbjct: 107 IVRRGRN---ASTGHPKRVDPQIYQQATSLETLIGYLYLSDFQRLTELLQKLQL 157
>gi|282896447|ref|ZP_06304468.1| Ribonuclease III [Raphidiopsis brookii D9]
gi|281198735|gb|EFA73615.1| Ribonuclease III [Raphidiopsis brookii D9]
Length = 158
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAY+GD IYELY R +L+P E Y++ V+A VR E Q + L+ L+ + L E
Sbjct: 47 AALAYLGDAIYELYVRMFYLWPQERPEIYHSLVVAQVRAEKQASHLRSLIPE--LRNHEL 104
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
++VR G+N A T +R +Y +A+SLETL GYLYLT+ RL +++ KL
Sbjct: 105 EIVRRGRN---AATGRPKRLDPEIYQQATSLETLVGYLYLTDYPRLTELLQKL 154
>gi|17228653|ref|NP_485201.1| hypothetical protein alr1158 [Nostoc sp. PCC 7120]
gi|17130504|dbj|BAB73115.1| alr1158 [Nostoc sp. PCC 7120]
Length = 161
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAY+GD IYELY R +L P + Y+ V+A VR ETQ L+ L YL A E
Sbjct: 48 AALAYVGDAIYELYVRMFYLLPLQRSDAYHRLVVAQVRAETQALHLRSL--TPYLRASEL 105
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++VR G+N + +R +Y +A+SLE L GYLYLT+ RL +++ K+
Sbjct: 106 EIVRRGRNAAAGRP---KRVNPEIYQQATSLEALIGYLYLTDFPRLTELLQKIHL 157
>gi|22297971|ref|NP_681218.1| hypothetical protein tlr0428 [Thermosynechococcus elongatus BP-1]
gi|81743756|sp|Q8DLQ0.1|MRNC_THEEB RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|22294149|dbj|BAC07980.1| tlr0428 [Thermosynechococcus elongatus BP-1]
Length = 151
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
PP + P A+LAY GD +YEL+ R FL PP I Y+ +V+A VR E+Q +
Sbjct: 11 QPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYM 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRL 225
L Y + ER + R G+N + +R A +Y +A+ E L GYLYLTN RL
Sbjct: 69 DFLWE--YCTETERSIFRQGRNAAADG---PKRVAAKIYRQATGFEALLGYLYLTNPQRL 123
Query: 226 EDVMSKLG 233
+++ L
Sbjct: 124 QEIFQLLA 131
>gi|300869383|ref|ZP_07113970.1| ribonuclease III (modular protein) [Oscillatoria sp. PCC 6506]
gi|300332610|emb|CBN59168.1| ribonuclease III (modular protein) [Oscillatoria sp. PCC 6506]
Length = 152
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ AS AY+GD +YEL+ R ++ PP + Y+ V+A VR ETQ L+ L +LS
Sbjct: 34 ISPASWAYLGDAVYELFVRMSYIVPPKRSQAYHELVVAQVRAETQARHLRSL--SPHLSI 91
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
+E ++V+ G+N A R +R +Y +A+SLETL GYLYLT+ RL +++
Sbjct: 92 KELEIVKRGRN---ATDRRPKRLDPEIYQQATSLETLVGYLYLTDPQRLAQLLA 142
>gi|443318251|ref|ZP_21047512.1| hypothetical protein Lep6406DRAFT_00012290 [Leptolyngbya sp. PCC
6406]
gi|442782151|gb|ELR92230.1| hypothetical protein Lep6406DRAFT_00012290 [Leptolyngbya sp. PCC
6406]
Length = 166
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 5/110 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD +YEL+ R +L PP I+ Y+ +V++ VR E Q L L +L+ E
Sbjct: 47 ALAYIGDAVYELFVRGCYLLPPRRIQTYHQQVVSQVRAEQQALTLSAL--RPHLTPLEES 104
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
+++ G+N +A TR RA AAVY +A+ LETL GYLYL + RL+ ++S
Sbjct: 105 ILKRGRN--AAPTR-GHRATAAVYGQATGLETLLGYLYLADPQRLKALLS 151
>gi|75910609|ref|YP_324905.1| ribonuclease III [Anabaena variabilis ATCC 29413]
gi|75704334|gb|ABA24010.1| Ribonuclease III [Anabaena variabilis ATCC 29413]
Length = 161
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A+LAY+GD IYELY R +L P + Y+ V+A VR ETQ L+ L YL A E
Sbjct: 48 AALAYVGDAIYELYVRMFYLLPLQRSDAYHRLVVAQVRAETQALHLRSL--TPYLRASEL 105
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
++VR G+N + +R +Y +A+SLE L GYLY+T+ RL +++ K+
Sbjct: 106 EIVRRGRNAAAGRP---KRVDPEIYQQATSLEALIGYLYITDFPRLTELLQKIHL 157
>gi|428778113|ref|YP_007169900.1| ribonuclease III [Halothece sp. PCC 7418]
gi|428692392|gb|AFZ45686.1| ribonuclease III [Halothece sp. PCC 7418]
Length = 152
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
P + A LAYIGD +YELY R ++L P +I +Y+ V++ VR E Q L+ LL +
Sbjct: 29 PLEQISPAGLAYIGDAVYELYVRLYYLLPQKNISDYHQLVVSEVRAENQAQQLEALLPN- 87
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
L+ E +V+ G+N A T+ RR A +Y +A+SLETL GYL+L + +R
Sbjct: 88 -LTESELQIVKRGRN---AATKRPRRLSAKIYQQATSLETLIGYLFLRDRDR 135
>gi|334117981|ref|ZP_08492071.1| ribonuclease III [Microcoleus vaginatus FGP-2]
gi|333459966|gb|EGK88576.1| ribonuclease III [Microcoleus vaginatus FGP-2]
Length = 148
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+ AY+GD +YELY R +L PP ++ Y+ V+ VR ETQ L+ L YL++
Sbjct: 34 ISPAAWAYLGDAVYELYVRSSYLVPPKKLQAYHELVVGQVRAETQARHLRSL--SPYLNS 91
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
E +V+ G+N + + +RA +Y +ASSLETL GYLYLT+ R
Sbjct: 92 TELAIVKRGRNAAAGRS---KRADPEIYQQASSLETLVGYLYLTDPER 136
>gi|148242428|ref|YP_001227585.1| ribonuclease III family protein [Synechococcus sp. RCC307]
gi|147850738|emb|CAK28232.1| Ribonuclease III family protein [Synechococcus sp. RCC307]
Length = 122
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LA++GD ++EL+ RR + +I+E + R +A+VR E Q L KL + L+AEE
Sbjct: 12 AQLAWLGDAVWELHQRRGLVAHEGTIQELHKRAVALVRAEAQSEALAKL--EPLLNAEEL 69
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
D VR G+N A R RR +VY RAS ET+ G+LYL RL+ + +L
Sbjct: 70 DWVRRGRN---ACGRGPRRGDPSVYGRASGFETMVGWLYLNQPERLQQLFHQL 119
>gi|86605013|ref|YP_473776.1| RNase3 domain-containing protein [Synechococcus sp. JA-3-3Ab]
gi|86553555|gb|ABC98513.1| RNase3 domain protein [Synechococcus sp. JA-3-3Ab]
Length = 143
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD IYEL+ RR LFPP E Y+ +V+ VR Q LL LL S
Sbjct: 21 LSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRVRGSAQARLLLALLPYL--SP 78
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
EER++VRWG+N R R A Y AS LET+ GYLYLT+ RL +++
Sbjct: 79 EEREIVRWGRN---GCGRPPRHLPLADYQNASGLETILGYLYLTDPERLRHILA 129
>gi|428306658|ref|YP_007143483.1| ribonuclease III [Crinalium epipsammum PCC 9333]
gi|428248193|gb|AFZ13973.1| ribonuclease III [Crinalium epipsammum PCC 9333]
Length = 164
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YELY R +L PP + Y+++V++ VR ETQ L+ L + +L+ +E D
Sbjct: 45 ALAYLGDAVYELYIRTCYLLPPKRSQSYHHQVVSQVRAETQADHLRSL--EPHLTTKELD 102
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
+VR G+N S +R +Y +A+S E L GYLYLT+ R
Sbjct: 103 IVRRGRNAASG---CPKRLDPKIYQQATSFEALVGYLYLTDTQR 143
>gi|428317878|ref|YP_007115760.1| ribonuclease III [Oscillatoria nigro-viridis PCC 7112]
gi|428241558|gb|AFZ07344.1| ribonuclease III [Oscillatoria nigro-viridis PCC 7112]
Length = 148
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+ AY+GD +YELY R +L PP ++ Y+ V+ VR ETQ L+ L YL++
Sbjct: 34 ISPAAWAYLGDAVYELYVRSSYLVPPRRLQAYHELVVGQVRAETQARHLRSL--SPYLNS 91
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
E +V+ G+N + + +RA +Y +ASSLETL GYLYLT+ R
Sbjct: 92 TELAIVKRGRNAAAGRS---KRADPEIYQQASSLETLVGYLYLTDPER 136
>gi|308806349|ref|XP_003080486.1| unnamed protein product [Ostreococcus tauri]
gi|116058946|emb|CAL54653.1| unnamed protein product, partial [Ostreococcus tauri]
Length = 883
Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 99 GYERWLPNPPKVGK--PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV 156
G W P V + PR ++ +LA++GD ++ELYAR +PP +Y+ + +
Sbjct: 429 GEAVWTPRTVDVRQKSPRQ-WSPIALAFLGDAVFELYARGVLFYPPAKPLDYDLKTKRLA 487
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK----RRAGAAVYNRASSLET 212
R E QD LL+ L++ LS +E +V+WG+N N T+ + G Y AS+LE
Sbjct: 488 RAEAQDYLLRLLVDGGELSEDEISIVKWGRNAAYGNIPTRLKGKGKGGHGTYRNASALEC 547
Query: 213 LAGYLYLTNANRLEDVMS 230
L GYLY+ + RLE++M+
Sbjct: 548 LVGYLYVADRARLEEIMA 565
>gi|254424593|ref|ZP_05038311.1| hypothetical protein S7335_4753 [Synechococcus sp. PCC 7335]
gi|196192082|gb|EDX87046.1| hypothetical protein S7335_4753 [Synechococcus sp. PCC 7335]
Length = 155
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAYIGD ++ELY R L P I +Y+++V+ V+ E Q + L L+ E+D
Sbjct: 43 SLAYIGDAVFELYVRSRLLIPAQRIRDYHHQVVTQVKAEQQSHFVDLL--SPVLTDAEKD 100
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNG 237
+VR G+N A T RRA Y +A+ LE+L G+LYLT+ RL ++++L G
Sbjct: 101 IVRRGRN---ATTGKSRRARGQDYQKATGLESLIGFLYLTDQPRLISLLNQLSDKAG 154
>gi|428770495|ref|YP_007162285.1| hypothetical protein Cyan10605_2155 [Cyanobacterium aponinum PCC
10605]
gi|428684774|gb|AFZ54241.1| hypothetical protein Cyan10605_2155 [Cyanobacterium aponinum PCC
10605]
Length = 132
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 110 VGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQK-- 167
+ K S + +LAYIGD +YELY R +L P I +Y++ V++ VR E+Q LQ
Sbjct: 7 ISKVLSQVSPDALAYIGDAVYELYIRTSYLLPSKKIADYHHVVVSKVRAESQATYLQNIY 66
Query: 168 -LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLE 226
LLND E+D VR G+N A ++ RR Y AS ETL GYLY++ RLE
Sbjct: 67 PLLNDI-----EKDWVRRGRN---AVNKSPRRLPLQTYQAASGFETLLGYLYISEPERLE 118
Query: 227 DVMSKL 232
++S L
Sbjct: 119 FLLSHL 124
>gi|86610252|ref|YP_479014.1| hypothetical protein CYB_2828 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558794|gb|ABD03751.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 143
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ A+LAY+GD IYEL+ RR LFPP +E Y+ +V+ VR Q LL LL +
Sbjct: 21 LSPAALAYLGDAIYELHVRRQRLFPPDRLERYHQQVVRRVRGSAQAKLLLALLPHL--NP 78
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
EE+++VRWG+N R R A Y AS LET+ GYLYL N RL +++
Sbjct: 79 EEQEIVRWGRN---GCGRPPRHLPLADYQNASGLETVLGYLYLANPERLRHILA 129
>gi|465503|sp|Q05370.1|MRNC_SYNP1 RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III;
AltName: Full=URF4
gi|480497|pir||S36970 hypothetical protein 4 (uncI 5' region) - Synechococcus sp. (PCC
6716)
gi|49224|emb|CAA49880.1| unnamed protein product [Synechococcus sp.]
Length = 146
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY GD +YEL+ R FL PP I Y+++V+A VR E+Q + L + +A E
Sbjct: 26 ALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAELT 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+ R G+N A +R A +Y +A+ E L GYLYLT+ RL+DV++ L
Sbjct: 84 IFRQGRN---AAADGPKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132
>gi|113475948|ref|YP_722009.1| ribonuclease III [Trichodesmium erythraeum IMS101]
gi|110166996|gb|ABG51536.1| Ribonuclease III [Trichodesmium erythraeum IMS101]
Length = 130
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
++ AY+GD +YELY R ++L PP Y+ V++ VR E+Q L L +L+ E
Sbjct: 20 SAWAYLGDAVYELYIRNYYLIPPKRSGYYHQLVVSQVRAESQAHQLHNL--KPHLTDVEL 77
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
D+++ G+N A R +R VY +A+SLETL GYLYLT+ RL ++S
Sbjct: 78 DILKRGRN---AAFRKPKRLDPEVYQQATSLETLIGYLYLTDPQRLNQLLS 125
>gi|78184878|ref|YP_377313.1| hypothetical protein Syncc9902_1305 [Synechococcus sp. CC9902]
gi|78169172|gb|ABB26269.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 143
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD ++EL+ R P + + V+A VR + Q LL L L AEE D
Sbjct: 21 QLAWIGDAVWELHQRLRLGARPGRSDALHKAVVAEVRADAQSNLLAWLEQQGLLHAEELD 80
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSS 239
+VR G+N + R RRA AAVY RA+ ET+ G+L+L N RL +++ +L +S
Sbjct: 81 LVRRGRN---SAGRGPRRADAAVYARATGFETMVGWLFLNNPVRLAELLDQLEMAGSNS 136
>gi|219122982|ref|XP_002181814.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407090|gb|EEC47028.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 134
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LAYIGD +YEL+ R ++PP + V+ VR E Q LL +L D LS
Sbjct: 13 MSSTDLAYIGDVVYELFVRSRSVWPPKRTSDLQTDVVGFVRAEFQSRLLAQLKEDVELSE 72
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ER V+ G+N S + R +R A Y A++LE L GYLY+ ++ R ++
Sbjct: 73 KERQVLSRGRNAVSGSARNRR--DPAAYQDATALEALLGYLYIADSQRCAEIF 123
>gi|397631478|gb|EJK70170.1| hypothetical protein THAOC_08493 [Thalassiosira oceanica]
Length = 159
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 6/126 (4%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
L +P + +P + N +SLAYIGD ++EL+ R +++P + + N+V++VVR E Q
Sbjct: 25 LMSPSQDARPEQM-NTSSLAYIGDVVFELFVRSRYVWPNRRMSDLQNKVVSVVRAEAQAV 83
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L Q + L+ +E+ VV G+N + R K + A Y +++ E L GY Y+ + N
Sbjct: 84 LFQNI----KLTPDEQSVVARGRN-ANLTVRKKNKGDATAYQDSTAFEALLGYTYIRDKN 138
Query: 224 RLEDVM 229
R +++
Sbjct: 139 RFNEII 144
>gi|186681663|ref|YP_001864859.1| ribonuclease III [Nostoc punctiforme PCC 73102]
gi|186464115|gb|ACC79916.1| ribonuclease III [Nostoc punctiforme PCC 73102]
Length = 159
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD IYELY R +L P Y++ V+ VR ETQ L+ L +L E +
Sbjct: 48 ALAYLGDAIYELYVRMFYLLPLQRSGIYHSLVVEQVRAETQALHLRSL--TPHLRDTELE 105
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N A T +R +Y +A+SLETL GYLYLT+ RL +++ L
Sbjct: 106 IVRRGRN---AATGRPKRLNPEIYQQATSLETLIGYLYLTDYQRLTELLQML 154
>gi|412991136|emb|CCO15981.1| predicted protein [Bathycoccus prasinos]
Length = 195
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 73 STDQSVFDLLKHPTQGVVANL--DESYMGYERWLPNPPKVGK--PRSVFNAASLAYIGDC 128
S D++VFD DE W P PP + PR F+ S A +GD
Sbjct: 5 SDDKNVFDAFSQMKTKKKKKEADDEETKTSSNWRPAPPDISSSAPRE-FSPISYALLGDS 63
Query: 129 IYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNV 188
++EL+ R + P Y+++V + R E+Q A + + + L+ EE DV +WG+N
Sbjct: 64 VWELFVRSYLFAPRSKPSTYDSKVKKLARAESQ-AYAYRKITEIQLTDEELDVCKWGRNA 122
Query: 189 GSANT----RTKRRAGAA--VYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+N R K+ G +Y +AS+LE + G+ +T+ RL++V+ ++
Sbjct: 123 DYSNVPKRLRGKKSQGGGHDIYRQASALEVILGWWMVTDDERLDEVLERV 172
>gi|307109891|gb|EFN58128.1| hypothetical protein CHLNCDRAFT_141867 [Chlorella variabilis]
Length = 195
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 28/153 (18%)
Query: 101 ERWL-PNPPKV-GK-PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVR 157
+ W+ P PP + GK PR +NA +LA++GD ++ELYARR F +PP E Y + V+ VR
Sbjct: 37 DEWVVPLPPHLHGKAPRRHWNANALAFLGDSVWELYARRRFFYPPSRKESYFSSVVQHVR 96
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA-NTRTKRRAGAA-------------V 203
ETQ Q +L+A +G + R +RR+G
Sbjct: 97 AETQQ---QHDAATRFLTA--------AAALGRIPSCRLRRRSGRVTPKRLSDTGLKRET 145
Query: 204 YNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
Y A+++E L+GYLYL++ RL D+M LG +
Sbjct: 146 YRAATAMECLSGYLYLSDPPRLHDMMCLLGLGD 178
>gi|78212685|ref|YP_381464.1| hypothetical protein Syncc9605_1154 [Synechococcus sp. CC9605]
gi|78197144|gb|ABB34909.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 136
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 122 LAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD ++EL+ R RH P S ++ + V+A VR + Q LL L LS+EE D
Sbjct: 22 LAWIGDAVWELHQRLRHGARPGRS-DQLHRAVVADVRADAQSRLLSWLEAHELLSSEELD 80
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N + R RRA AAVY RA+ ET+ G+L+L RL ++ L
Sbjct: 81 LVRRGRN---SAGRGPRRADAAVYGRATGFETMVGWLFLNKPARLAELFDHL 129
>gi|260435321|ref|ZP_05789291.1| ribonuclease III family protein [Synechococcus sp. WH 8109]
gi|260413195|gb|EEX06491.1| ribonuclease III family protein [Synechococcus sp. WH 8109]
Length = 136
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 122 LAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD ++EL+ R RH P S + + V+A VR + Q LL L L +EE D
Sbjct: 22 LAWIGDAVWELHQRLRHGSRPGRS-GDLHRAVVADVRADAQSRLLSWLEERELLCSEELD 80
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N + R RRA AAVY RA+ ET+ G+L+L N RL ++ L
Sbjct: 81 LVRRGRN---SAGRGPRRADAAVYGRATGFETMVGWLFLNNPARLAELFDHL 129
>gi|33240197|ref|NP_875139.1| hypothetical protein Pro0747 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237724|gb|AAP99791.1| Ribonuclease III family protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 137
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD I+E++ R P ++ + V+++VR E Q A L+ L D YL+ ER
Sbjct: 21 QLAWLGDAIWEMHQRLRLCEKPAKSKDLHFSVVSLVRAEAQAAALENL--DYYLTDLERK 78
Query: 181 VVRWGKN-VGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
VR G+N VG R R+ A+Y +A+ ETL G+L+L + NRL ++ +L
Sbjct: 79 FVRKGRNRVG----RGSRKVNIAIYGKATGFETLIGWLFLKDPNRLAQLLDRL 127
>gi|352094235|ref|ZP_08955406.1| hypothetical protein Syn8016DRAFT_0748 [Synechococcus sp. WH 8016]
gi|351680575|gb|EHA63707.1| hypothetical protein Syn8016DRAFT_0748 [Synechococcus sp. WH 8016]
Length = 134
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+P + LA++GD ++EL+ R F P ++ + V+++VR + Q A L+KL +
Sbjct: 12 EPERDLGSLQLAWLGDAVWELHHRLRFCKTPGRSQDLHQAVVSLVRADAQAAALEKL--E 69
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
+L+ +ERD V + + R +RA A VY RA+ ET+ G+L+L N RL ++ +
Sbjct: 70 PFLTDQERDYV---RRGRNRAGRGPKRADAGVYGRATGFETMIGWLFLQNPARLAQLLDR 126
Query: 232 LGFTN 236
L T+
Sbjct: 127 LEETD 131
>gi|113954064|ref|YP_730839.1| RNase3 domain-containing protein [Synechococcus sp. CC9311]
gi|113881415|gb|ABI46373.1| putative RNase3 domain [Synechococcus sp. CC9311]
Length = 135
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+P + LA++GD ++EL+ R F P ++ + V+++VR + Q A L+KL +
Sbjct: 12 EPERDLGSLQLAWLGDAVWELHQRLRFCKTPGRSQDLHQAVVSLVRADAQAAALEKL--E 69
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
+L+ +ERD V + + R +RA A +Y RA+ ET+ G+L+L N RL ++ +
Sbjct: 70 PFLNDQERDYV---RRGRNRAGRGPKRADAGIYGRATGFETMIGWLFLQNPARLAQLLDR 126
Query: 232 LGFTN 236
L T+
Sbjct: 127 LEETD 131
>gi|428780656|ref|YP_007172442.1| hypothetical protein Dacsa_2494 [Dactylococcopsis salina PCC 8305]
gi|428694935|gb|AFZ51085.1| hypothetical protein Dacsa_2494 [Dactylococcopsis salina PCC 8305]
Length = 150
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
P + A+LAYIGD +YELY R ++L PP I EY+ V++ VR E Q LQ L+
Sbjct: 27 PLEQLSPAALAYIGDAVYELYLRLYYLLPPKKIGEYHQLVVSEVRAENQARQLQILM--P 84
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
+L+ E+ +V+ G+N A + RR VY +A+SLETL GYL+L++ +R
Sbjct: 85 FLTESEQAIVKRGRN---AAKKHPRRLSPKVYQQATSLETLVGYLFLSDRDR 133
>gi|33862924|ref|NP_894484.1| hypothetical protein PMT0651 [Prochlorococcus marinus str. MIT
9313]
gi|124023281|ref|YP_001017588.1| hypothetical protein P9303_15791 [Prochlorococcus marinus str. MIT
9303]
gi|33634841|emb|CAE20826.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
gi|123963567|gb|ABM78323.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
marinus str. MIT 9303]
Length = 135
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++EL+ R + P E+ + V+ V+ Q L +L D +LS E+D
Sbjct: 21 QLAWLGDAVWELHQRLRHCYQPGRSEDLHRAVVDEVKAAAQAEALLRL--DPHLSDLEKD 78
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+VR G+N + R RR AA Y +A+ ET+ G+L+L N RL ++ +L
Sbjct: 79 LVRRGRN---KSGRGPRRGDAATYGKATGFETMVGWLFLQNPARLAQLLDQL 127
>gi|406981880|gb|EKE03268.1| hypothetical protein ACD_20C00225G0012 [uncultured bacterium]
Length = 128
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 123 AYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
A+IGD +YELYAR + +++ + +++V E Q LL + +++ EE+D+V
Sbjct: 10 AHIGDAVYELYAREKTVLLSSKVDKLHKYTISIVNAEFQVHLLNSM--QDFMTDEEKDIV 67
Query: 183 RWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
R +N+ T +R ++ +++ E L GYLYL N RL+D+ S +
Sbjct: 68 RRARNL---QVTTAKRCNHTIHRLSTAFEALIGYLYLNNPERLKDLYSHI 114
>gi|315649723|ref|ZP_07902807.1| ribonuclease III [Paenibacillus vortex V453]
gi|315274911|gb|EFU38287.1| ribonuclease III [Paenibacillus vortex V453]
Length = 147
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEY--NNRVMAVVRCET 160
W PP KP + LAYIGD IYE+ A R FL ++ + + V +
Sbjct: 13 WFDFPPS--KPARLIPPIVLAYIGDAIYEV-AVRQFLISKANLRPHHLHRTATGFVSAKA 69
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q +L L D L+ EERDVVR G+N S + + A Y A++ ETL GYLY T
Sbjct: 70 QSRILAFL--DPELTEEERDVVRQGRNAKSGS--IPKNADVLEYRHATAFETLVGYLYYT 125
Query: 221 NA-NRLEDVMSK-LGFTNGSS 239
+RL +++ K + F GS+
Sbjct: 126 GEQDRLRELIGKSIEFIEGSA 146
>gi|116070436|ref|ZP_01467705.1| hypothetical protein BL107_12360 [Synechococcus sp. BL107]
gi|116065841|gb|EAU71598.1| hypothetical protein BL107_12360 [Synechococcus sp. BL107]
Length = 143
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LA+IGD ++EL+ R P + + V+A VR + Q LL L L +E D+
Sbjct: 22 LAWIGDAVWELHQRLRLGARPGRSDALHKAVVAEVRADAQSNLLAWLEQHDLLHDDELDL 81
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
VR G+N + R RRA AAVY RA+ ET+ G+L+L N RL +++ +L
Sbjct: 82 VRRGRN---SAGRGPRRADAAVYGRATGFETMVGWLFLNNPVRLAELLDQL 129
>gi|81300929|ref|YP_401137.1| ribonuclease III [Synechococcus elongatus PCC 7942]
gi|81169810|gb|ABB58150.1| Ribonuclease III [Synechococcus elongatus PCC 7942]
Length = 138
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YE + R L P +++ V+A VR E Q LL LL +AEE +
Sbjct: 27 ALAYLGDALYEFHVRLRLLLPAQRSHQFHQSVVAAVRAERQAELLVSLLPLL--TAEELE 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+VR G+N A R RR A Y +A+ LETL GYLYL +
Sbjct: 85 IVRRGRN---AAGRVPRRLTAECYQQATGLETLLGYLYLCD 122
>gi|225181303|ref|ZP_03734748.1| ribonuclease III [Dethiobacter alkaliphilus AHT 1]
gi|225168083|gb|EEG76889.1| ribonuclease III [Dethiobacter alkaliphilus AHT 1]
Length = 123
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 122 LAYIGDCIYELYARRHF-LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD ++EL+ R+ L + + + R +VR E QDA L ++ + LS EE +
Sbjct: 10 LAYVGDAVFELFVRQKLSRQKALPVRQLHRRATRLVRAEGQDAALGQI--EPLLSEEEAE 67
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
+VR G+N S R + A A Y RA+ E L G+LYL +RLE+++ +
Sbjct: 68 IVRRGRNTKS---RVPKNADMAAYRRATGFEALLGWLYLNGEHHRLEELLDAI 117
>gi|380876978|sp|Q7NDQ2.2|MRNC_GLOVI RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
Length = 135
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++EL+ R L PP ++ + +A VR Q L L +L+ EE D
Sbjct: 13 ALAYLGDAVWELHVRTRVLLPPRRLQWLHGDTVACVRASAQAKLATCL--SPHLTVEEAD 70
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+R G+N G RR A Y A++ E L GYL+L + +RL ++
Sbjct: 71 WLRRGRNAGGT---VPRRLDPATYRLATAFEALLGYLFLADRDRLGVIL 116
>gi|433447292|ref|ZP_20410889.1| ribonuclease III family protein [Anoxybacillus flavithermus
TNO-09.006]
gi|431999956|gb|ELK20863.1| ribonuclease III family protein [Anoxybacillus flavithermus
TNO-09.006]
Length = 141
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YEL+ R H L + + +N V + Q +LQ LLN + LS
Sbjct: 14 LNGLTLAYIGDAVYELFVRHHLLTLGKVKPNDLHNLAKTYVCAKAQAKVLQWLLNHNQLS 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E +VR G+N S + T + Y +++ LE L GY +L+ N RL +M
Sbjct: 74 EQEMAIVRRGRNAKSGS--TPKNTDVQTYRQSTGLEALIGYHFLSGNEERLHQLMQ 127
>gi|375006898|ref|YP_004980528.1| ribonuclease mrnC [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359285744|gb|AEV17428.1| ribonuclease mrnC [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 141
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y RRH L + E + R + V Q ++ LL++ L+
Sbjct: 14 LNGLALAYIGDAVYEVYVRRHLLAGGSVRPHELHRRAVRYVSARAQAQVILALLDEGVLT 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE+D+VR G+N S + Y +++ E L GY +L N R+++++ +
Sbjct: 74 EEEKDIVRRGRNAKSGT--IPKNTDVQTYRHSTAFEALIGYHFLVNNEKRVDELIGR 128
>gi|261417587|ref|YP_003251269.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|297528462|ref|YP_003669737.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|319765245|ref|YP_004130746.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448236396|ref|YP_007400454.1| RNase Mini-III [Geobacillus sp. GHH01]
gi|261374044|gb|ACX76787.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|297251714|gb|ADI25160.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|317110111|gb|ADU92603.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445205238|gb|AGE20703.1| RNase Mini-III [Geobacillus sp. GHH01]
Length = 141
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y RRH L + E + R + V Q ++ LL++ L+
Sbjct: 14 LNGLALAYIGDAVYEVYVRRHLLAGGSVRPHELHRRAVRYVSARAQARVILALLDEGVLT 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE+D+VR G+N S + Y +++ E L GY +L N R+++++ +
Sbjct: 74 EEEKDIVRRGRNAKSGT--IPKNTDVQTYRHSTAFEALIGYHFLVNNEKRVDELIGR 128
>gi|56418621|ref|YP_145939.1| hypothetical protein GK0086 [Geobacillus kaustophilus HTA426]
gi|56378463|dbj|BAD74371.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 140
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y RRH L + E + R + V Q ++ LL++ L+
Sbjct: 13 LNGLALAYIGDAVYEVYVRRHLLAGGSVRPHELHRRAVRYVSARAQARVILALLDEGVLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE+D+VR G+N S + Y +++ E L GY +L N R+++++ +
Sbjct: 73 EEEKDIVRRGRNAKSGT--IPKNTDVQTYRHSTAFEALIGYHFLVNNEKRVDELIGR 127
>gi|194476710|ref|YP_002048889.1| hypothetical protein PCC_0230 [Paulinella chromatophora]
gi|171191717|gb|ACB42679.1| hypothetical protein PCC_0230 [Paulinella chromatophora]
Length = 135
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 100 YERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCE 159
+ WL P + P + LA++GD ++EL+ R P ++ ++ V+ V+
Sbjct: 4 FTDWLKAIPDL-TPINELGPLQLAWLGDAVWELHQRLQLCQTPCCSKDLHSAVVKRVKAT 62
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q + LQKL L +E D++R G+N R R A+Y RA+ ET+ G+L+L
Sbjct: 63 AQSSALQKL--KPLLEKDELDLIRRGRNRAK---RGPRNIDPAIYARATGFETMMGWLFL 117
Query: 220 TNANRLEDVMSKL 232
N RL ++ +L
Sbjct: 118 QNPARLVQLLDQL 130
>gi|212637934|ref|YP_002314454.1| ribonuclease III family protein [Anoxybacillus flavithermus WK1]
gi|212559414|gb|ACJ32469.1| Ribonuclease III family protein [Anoxybacillus flavithermus WK1]
Length = 141
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YEL+ R H L + + +N V + Q +LQ LLN + LS
Sbjct: 14 LNGLTLAYIGDAVYELFVRHHLLTLGKVKPNDLHNLAKTYVCAKAQAEVLQWLLNHNQLS 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E +VR G+N S + T + Y +++ LE L GY +L+ N RL +M
Sbjct: 74 EQEMAIVRRGRNAKSGS--TPKNTDVQTYRQSTGLEALIGYHFLSGNEERLYQLMQ 127
>gi|374320667|ref|YP_005073796.1| ribonuclease III [Paenibacillus terrae HPL-003]
gi|357199676|gb|AET57573.1| ribonuclease III [Paenibacillus terrae HPL-003]
Length = 152
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 99 GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVR 157
G W P P KP + +LAYIGD +YE+ R++ L P L + R +V
Sbjct: 13 GAGNWFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAQPNLRPNHLHRRATGLVS 70
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL 217
+ Q +L +L ++ L+ EERD+VR G+N S + + A Y A++LE L G+L
Sbjct: 71 AKAQSRML--VLLETVLTEEERDIVRQGRNAKSGS--LPKNADVLEYRHATALEGLFGFL 126
Query: 218 Y 218
Y
Sbjct: 127 Y 127
>gi|261409540|ref|YP_003245781.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|329925596|ref|ZP_08280437.1| RNase3 domain protein [Paenibacillus sp. HGF5]
gi|261286003|gb|ACX67974.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|328939725|gb|EGG36067.1| RNase3 domain protein [Paenibacillus sp. HGF5]
Length = 147
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEY--NNRVMAVVRCET 160
W PP KP + LAYIGD IYE+ A R FL ++ + + + V +
Sbjct: 13 WFDFPPS--KPARLIPPIVLAYIGDAIYEV-AVRQFLISRANLRPHHLHRSATSFVSAKA 69
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q +L L D L+ EERDVVR G+N S + + A Y A++ ETL GYLY
Sbjct: 70 QSRILAFL--DPELTEEERDVVRQGRNAKSGS--IPKNADVLEYRHATAFETLVGYLYYA 125
Query: 221 N-ANRLEDVMSK-LGFTNGS 238
+RL +++ K + F GS
Sbjct: 126 GEQDRLRELIGKSIEFIEGS 145
>gi|365157348|ref|ZP_09353621.1| hypothetical protein HMPREF1015_02886 [Bacillus smithii 7_3_47FAA]
gi|363625249|gb|EHL76291.1| hypothetical protein HMPREF1015_02886 [Bacillus smithii 7_3_47FAA]
Length = 134
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y RRH L + + V + Q +L+KL++D LS
Sbjct: 13 LNGLALAYMGDAIYEVYVRRHLLVNGYVKPNRLHKAATHYVSAKAQAMILKKLIDDHVLS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
E +V+ G+N S + Y +++ E L GYL+LT ++RL D++ +
Sbjct: 73 ETELSIVKRGRNAKSGT--VPKNTDVQTYRYSTAFEALIGYLFLTGQSSRLNDIIDQ 127
>gi|310644225|ref|YP_003948984.1| ribonuclease iii [Paenibacillus polymyxa SC2]
gi|309249176|gb|ADO58743.1| Ribonuclease III [Paenibacillus polymyxa SC2]
Length = 152
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 99 GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVR 157
G W P P KP + +LAYIGD +YE+ R++ L P L + R +V
Sbjct: 13 GAGNWFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAHPNLRPNHLHRRATKLVS 70
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL 217
+ Q +L L ++ L+ EERD+VR G+N S + + A Y A++LE L GYL
Sbjct: 71 AKAQCRILGLL--ETVLTDEERDIVRQGRNAKSGS--LPKNADVLEYRHATALEGLIGYL 126
Query: 218 YL-TNANRLEDVMS 230
Y + +RL ++++
Sbjct: 127 YCDGHLDRLTELIT 140
>gi|145340764|ref|XP_001415489.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575712|gb|ABO93781.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 181
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVR------ 157
L P+ RS A + Y+GD ++ELYAR+H + ++ E + +R
Sbjct: 12 LEKIPQPLVERSPSVALAFTYLGDAVWELYARQHMILKRVTSSESASTSGRAIRPQDGVS 71
Query: 158 -----CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLET 212
+ A L +LL L+ +E V++WG++ G +R+ + V+ AS+LE
Sbjct: 72 KGWCSAKAMHAHLNRLLEQDLLTDQELAVLKWGRDFGH-ESRSGHKGD--VHRDASALEA 128
Query: 213 LAGYLYLTNANRLEDVMSKLGFT 235
L YLYL ++RL +V+ G T
Sbjct: 129 LVAYLYLFESDRLHEVLELCGMT 151
>gi|124025637|ref|YP_001014753.1| hypothetical protein NATL1_09301 [Prochlorococcus marinus str.
NATL1A]
gi|123960705|gb|ABM75488.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
marinus str. NATL1A]
Length = 132
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LA++GD ++E++ R + P+ ++ +N V+ V +Q + KL + +L+ E+D
Sbjct: 22 LAWLGDAVWEMHQRLRYCSSPMRSKDLHNAVVKEVNASSQAKAITKL--EPFLTDTEKDF 79
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+R G+N R + AA Y A+ ET+ G+L+L N NRL D+ L
Sbjct: 80 LRKGRNKAG---RGPKNVDAATYAIATGFETIVGWLFLKNPNRLADLFDLL 127
>gi|392304918|emb|CCI71281.1| ribonuclease III family protein [Paenibacillus polymyxa M1]
Length = 156
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 99 GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVR 157
G W P P KP + +LAYIGD +YE+ R++ L P L + R +V
Sbjct: 17 GAGNWFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAHPNLRPNHLHRRATKLVS 74
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL 217
+ Q +L L ++ L+ EERD+VR G+N S + + A Y A++LE L GYL
Sbjct: 75 AKAQCRILGLL--ETVLTDEERDIVRQGRNAKSGS--LPKNADVLEYRHATALEGLIGYL 130
Query: 218 YL-TNANRLEDVMS 230
Y + +RL ++++
Sbjct: 131 YCDGHLDRLTELIT 144
>gi|308799051|ref|XP_003074306.1| unnamed protein product [Ostreococcus tauri]
gi|116000477|emb|CAL50157.1| unnamed protein product [Ostreococcus tauri]
Length = 207
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 124 YIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVR---------CETQ--DALLQKLLNDS 172
Y+GD ++ELYAR+H + + E + +R C + A L +LL
Sbjct: 55 YLGDAVWELYARQHMILKRVKSNEGASGSGRAIRPQEGVSKGWCSAKAMHAHLGRLLEQD 114
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAG--AAVYNRASSLETLAGYLYLTNANRLEDVMS 230
+L+ +E V++WG++ G + RAG V+ AS+LE L YLYL + RL V++
Sbjct: 115 FLNDDELAVLKWGRDFGH-----ESRAGHKGDVHRDASALEALVAYLYLFDNERLHQVLA 169
Query: 231 KLGFT 235
G T
Sbjct: 170 ACGMT 174
>gi|72382101|ref|YP_291456.1| hypothetical protein PMN2A_0261 [Prochlorococcus marinus str.
NATL2A]
gi|72001951|gb|AAZ57753.1| conserved hypothetical protein [Prochlorococcus marinus str.
NATL2A]
Length = 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LA++GD ++E++ R + P+ ++ +N V+ V +Q + KL + +L+ E+D
Sbjct: 22 LAWLGDAVWEMHQRLRYCSSPMRSKDLHNAVVREVNASSQAKAITKL--EPFLTDTEKDF 79
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+R G+N R + AA Y A+ ET+ G+L+L N NRL D+ L
Sbjct: 80 LRKGRNKAG---RGPKNVDAATYAIATGFETIVGWLFLKNPNRLADLFDLL 127
>gi|317969743|ref|ZP_07971133.1| hypothetical protein SCB02_09420 [Synechococcus sp. CB0205]
Length = 118
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++EL+ R P + + V+A VR + Q L +L L E +
Sbjct: 5 QLAWLGDAVWELHQRMRRCRQPGRSSDLHRAVVADVRADAQAEALDRLQEKGLLQEAELE 64
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
VR G+N R R+ A VY +A+ ET+ G+L+L N +RL ++++L
Sbjct: 65 WVRRGRNKAG---RGPRKGEAGVYGKATGFETMVGWLFLQNPSRLAQLLAEL 113
>gi|308070996|ref|YP_003872601.1| ribonuclease III [Paenibacillus polymyxa E681]
gi|305860275|gb|ADM72063.1| Ribonuclease III [Paenibacillus polymyxa E681]
Length = 152
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 95 ESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVM 153
E+ G W P P KP + +LAYIGD +YE+ R++ L P L + R
Sbjct: 9 EASEGTGNWFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAQPNLRPNHLHRRAT 66
Query: 154 AVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETL 213
+V + Q +L L + L+ EERD+VR G+N S + + A Y A++LE L
Sbjct: 67 GLVSAKAQSRMLGLL--EKVLTEEERDIVRQGRNAKSGS--LPKNADVLEYRHATALEGL 122
Query: 214 AGYLYL-TNANRLEDVMS 230
G LY + +RL ++++
Sbjct: 123 IGSLYCDGHLDRLRELIT 140
>gi|374992960|ref|YP_004968459.1| hypothetical protein Desor_0226 [Desulfosporosinus orientis DSM
765]
gi|357211326|gb|AET65944.1| hypothetical protein Desor_0226 [Desulfosporosinus orientis DSM
765]
Length = 130
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L ++E + + ++ VR TQ +L LL D L+
Sbjct: 7 MNALTLAYLGDAVYELWVRTHLLELGHEKVKELHKQAISYVRASTQAKVLHALLPD--LN 64
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
E+ +V G+N + + Y A++ E+L GY +L+ N S++G+
Sbjct: 65 EIEQQIVMRGRNSKGGHPKN---VDVLTYRHATAFESLIGYWHLSGQN------SRMGWA 115
Query: 236 NGSSTQMILEEANSK 250
+M+L+E ++
Sbjct: 116 FDQVDRMLLQERQAE 130
>gi|24378674|ref|NP_720629.1| hypothetical protein SMU_159 [Streptococcus mutans UA159]
gi|449865724|ref|ZP_21779147.1| hypothetical protein SMU101_05902 [Streptococcus mutans U2B]
gi|449870979|ref|ZP_21780950.1| hypothetical protein SMU10_05210 [Streptococcus mutans 8ID3]
gi|449986696|ref|ZP_21820228.1| hypothetical protein SMU52_08716 [Streptococcus mutans NFSM2]
gi|450070676|ref|ZP_21847712.1| hypothetical protein SMU74_00986 [Streptococcus mutans M2A]
gi|450082786|ref|ZP_21852532.1| hypothetical protein SMU76_05854 [Streptococcus mutans N66]
gi|24376536|gb|AAN57935.1|AE014867_7 conserved hypothetical protein [Streptococcus mutans UA159]
gi|449155785|gb|EMB59279.1| hypothetical protein SMU10_05210 [Streptococcus mutans 8ID3]
gi|449177400|gb|EMB79702.1| hypothetical protein SMU52_08716 [Streptococcus mutans NFSM2]
gi|449213515|gb|EMC13848.1| hypothetical protein SMU74_00986 [Streptococcus mutans M2A]
gi|449214170|gb|EMC14472.1| hypothetical protein SMU76_05854 [Streptococcus mutans N66]
gi|449264120|gb|EMC61471.1| hypothetical protein SMU101_05902 [Streptococcus mutans U2B]
Length = 139
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + +++ V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHHKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|312109241|ref|YP_003987557.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336233635|ref|YP_004586251.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423718357|ref|ZP_17692539.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311214342|gb|ADP72946.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335360490|gb|AEH46170.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365167|gb|EID42468.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 139
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YELY R H L + + + R + V + Q +L LL + L+
Sbjct: 13 MNGLTLAYIGDAVYELYVRHHLLSSGNVKPHQLHKRAIQYVSAKAQAKVLLTLLENGILT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
EE+ VVR G+N S + Y +++ E L GY +L N R+E+++
Sbjct: 73 EEEQSVVRRGRNAKSGT--IPKNTDVQTYRYSTAFEALIGYHFLGNNEKRVEELI 125
>gi|354585446|ref|ZP_09004333.1| ribonuclease III [Paenibacillus lactis 154]
gi|353188715|gb|EHB54235.1| ribonuclease III [Paenibacillus lactis 154]
Length = 146
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQ 161
W PP KP + LAYIGD IYE+ R++ + P L + +V + Q
Sbjct: 13 WFDFPPS--KPARLIPPIVLAYIGDAIYEVAVRQYLISRPNLRPNHLHRTATGLVSAKAQ 70
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L L + L+ EE+D+VR G+N S + + A Y A++ ETL GYLY T
Sbjct: 71 SRILAYL--EPLLTEEEQDIVRQGRNAKSGS--VPKNADVLEYRHATAFETLVGYLYYTG 126
Query: 222 -ANRLEDVMSK 231
+R+ +++ K
Sbjct: 127 RQDRIRELVGK 137
>gi|138893765|ref|YP_001124218.1| hypothetical protein GTNG_0086 [Geobacillus thermodenitrificans
NG80-2]
gi|134265278|gb|ABO65473.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 131
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y RRH L + E + R + V Q ++ LL++ L+
Sbjct: 4 LNGLALAYIGDAVYEVYVRRHLLATGNVRPHELHRRAIRYVSARAQAKVILALLDEDALT 63
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE+ +VR G+N S T + Y +++ E L GY +L N R+++++ +
Sbjct: 64 DEEKAIVRRGRNAKSGT--TPKNTDVQTYRHSTAFEALIGYHFLRNDEKRVDELIGR 118
>gi|400291283|ref|ZP_10793309.1| hypothetical protein SRA_10173 [Streptococcus ratti FA-1 = DSM
20564]
gi|399920430|gb|EJN93248.1| hypothetical protein SRA_10173 [Streptococcus ratti FA-1 = DSM
20564]
Length = 132
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGLALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKATRYVSAKAQAMLITKILEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
L+ +E D+ R G+N AN+ TK + Y ++ E + GYL++TN RLE+++
Sbjct: 68 LTEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTNQVERLEELI 122
>gi|196251124|ref|ZP_03149803.1| ribonuclease III [Geobacillus sp. G11MC16]
gi|196209365|gb|EDY04145.1| ribonuclease III [Geobacillus sp. G11MC16]
Length = 140
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y RRH L + E + R + V Q ++ LL++ L+
Sbjct: 13 LNGLALAYIGDAVYEVYVRRHLLATGNVRPHELHRRAIRYVSARAQAKVILALLDEDALT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE+ +VR G+N S T + Y +++ E L GY +L N R+++++ +
Sbjct: 73 DEEKAIVRRGRNAKSGT--TPKNTDVQTYRHSTAFEALIGYHFLRNDEKRVDELIGR 127
>gi|450064490|ref|ZP_21845400.1| hypothetical protein SMU70_08878 [Streptococcus mutans NLML5]
gi|449203653|gb|EMC04508.1| hypothetical protein SMU70_08878 [Streptococcus mutans NLML5]
Length = 139
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD IY Y R+H +F L+ + +++ V + Q L+ K+L L
Sbjct: 9 LINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHSKTTRYVSAKAQAMLITKMLEAQLL 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
S +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 69 SEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|253577159|ref|ZP_04854479.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843403|gb|EES71431.1| ribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
Length = 125
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YE+ R+H + P L + + V + Q LL+++ + L+ EE+
Sbjct: 5 ALAYIGDAVYEVAVRQHVMARPNLRPHHLHGQSTKYVSAKAQARLLERI--EPLLTEEEK 62
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKLGFTN 236
DVVR G+N S + A Y A++ E+L GYLY T A +RL ++++ GF +
Sbjct: 63 DVVRQGRNAKSGT--VPKNANVQDYRLATAFESLVGYLYYTGAHDRLRELIAH-GFAD 117
>gi|403238386|ref|ZP_10916972.1| hypothetical protein B1040_21812 [Bacillus sp. 10403023]
Length = 135
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIE--EYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE+Y RH+L S+ + +N+ V + Q A++ ++L++ + +
Sbjct: 15 NSLALAYMGDAVYEMYV-RHYLLQKGSVRPNQLHNQAKHYVSAKAQSAVIHQMLDEEFFT 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
EE+ V+R G+N S + Y +++ E L G+ +L N +R+ ++ ++
Sbjct: 74 EEEQAVIRRGRNAKSGT--VPKNTDVQTYRYSTAFEALLGFHFLQNNTDRIHSIIEEV 129
>gi|260584969|ref|ZP_05852713.1| ribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157399|gb|EEW92471.1| ribonuclease III [Granulicatella elegans ATCC 700633]
Length = 140
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQK 167
++ K + N +LAY+GD IYELY R+H L + +R V + Q +L+Q+
Sbjct: 7 EIIKDWHLLNGLTLAYMGDGIYELYIRQHVLRTGKTKPNILHREATRYVSAKAQASLIQQ 66
Query: 168 LL-NDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANR 224
+L N+S+L+ EE + + G+N A + TK + A Y ++ E + GYLYL+ R
Sbjct: 67 MLDNESFLTEEELEYFKRGRN---AKSHTKAKNADVITYRMSTGFEAMIGYLYLSGQKER 123
Query: 225 LEDVMS 230
LE+V+
Sbjct: 124 LEEVIE 129
>gi|449981213|ref|ZP_21817682.1| hypothetical protein SMU50_05518 [Streptococcus mutans 5SM3]
gi|449175974|gb|EMB78344.1| hypothetical protein SMU50_05518 [Streptococcus mutans 5SM3]
Length = 139
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGITLAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|297611526|ref|NP_001067572.2| Os11g0237700 [Oryza sativa Japonica Group]
gi|255679938|dbj|BAF27935.2| Os11g0237700 [Oryza sativa Japonica Group]
Length = 139
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 33/36 (91%), Gaps = 1/36 (2%)
Query: 98 MGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYEL 132
MG+ERW LP PP+V KPRS++NAASLAY+GDCIYE+
Sbjct: 92 MGFERWWLPPPPEVKKPRSLYNAASLAYLGDCIYEV 127
>gi|387785310|ref|YP_006250406.1| hypothetical protein SMULJ23_0129 [Streptococcus mutans LJ23]
gi|449876914|ref|ZP_21783043.1| hypothetical protein SMU102_06269 [Streptococcus mutans S1B]
gi|449881139|ref|ZP_21784292.1| hypothetical protein SMU103_02491 [Streptococcus mutans SA38]
gi|449891709|ref|ZP_21788093.1| hypothetical protein SMU105_02467 [Streptococcus mutans SF12]
gi|449922449|ref|ZP_21799161.1| hypothetical protein SMU21_09538 [Streptococcus mutans 1SM1]
gi|449925867|ref|ZP_21800471.1| hypothetical protein SMU22_06222 [Streptococcus mutans 4SM1]
gi|449932735|ref|ZP_21802956.1| hypothetical protein SMU26_09184 [Streptococcus mutans 3SN1]
gi|449951700|ref|ZP_21808776.1| hypothetical protein SMU33_08887 [Streptococcus mutans 11SSST2]
gi|449960053|ref|ZP_21810488.1| hypothetical protein SMU36_07751 [Streptococcus mutans 4VF1]
gi|449967504|ref|ZP_21812707.1| hypothetical protein SMU40_09353 [Streptococcus mutans 15VF2]
gi|449990025|ref|ZP_21821302.1| hypothetical protein SMU53_04201 [Streptococcus mutans NVAB]
gi|450000991|ref|ZP_21825458.1| hypothetical protein SMU56_06047 [Streptococcus mutans N29]
gi|450007975|ref|ZP_21827967.1| hypothetical protein SMU57_09016 [Streptococcus mutans NMT4863]
gi|450046624|ref|ZP_21839039.1| hypothetical protein SMU66_06269 [Streptococcus mutans N34]
gi|450076590|ref|ZP_21849904.1| hypothetical protein SMU75_02280 [Streptococcus mutans N3209]
gi|450097991|ref|ZP_21857766.1| hypothetical protein SMU80_02083 [Streptococcus mutans SF1]
gi|450105080|ref|ZP_21859630.1| hypothetical protein SMU81_00885 [Streptococcus mutans SF14]
gi|450137969|ref|ZP_21871917.1| hypothetical protein SMU89_03573 [Streptococcus mutans NLML1]
gi|450159844|ref|ZP_21879678.1| hypothetical protein SMU94_03951 [Streptococcus mutans 66-2A]
gi|450163601|ref|ZP_21880874.1| hypothetical protein SMU95_00390 [Streptococcus mutans B]
gi|450170440|ref|ZP_21883499.1| hypothetical protein SMU97_03931 [Streptococcus mutans SM4]
gi|450176299|ref|ZP_21885704.1| hypothetical protein SMU98_05112 [Streptococcus mutans SM1]
gi|379131711|dbj|BAL68463.1| hypothetical protein SMULJ23_0129 [Streptococcus mutans LJ23]
gi|449155990|gb|EMB59476.1| hypothetical protein SMU21_09538 [Streptococcus mutans 1SM1]
gi|449161010|gb|EMB64231.1| hypothetical protein SMU26_09184 [Streptococcus mutans 3SN1]
gi|449161157|gb|EMB64367.1| hypothetical protein SMU22_06222 [Streptococcus mutans 4SM1]
gi|449165867|gb|EMB68834.1| hypothetical protein SMU33_08887 [Streptococcus mutans 11SSST2]
gi|449168047|gb|EMB70888.1| hypothetical protein SMU36_07751 [Streptococcus mutans 4VF1]
gi|449168710|gb|EMB71517.1| hypothetical protein SMU40_09353 [Streptococcus mutans 15VF2]
gi|449182195|gb|EMB84236.1| hypothetical protein SMU53_04201 [Streptococcus mutans NVAB]
gi|449185102|gb|EMB87005.1| hypothetical protein SMU56_06047 [Streptococcus mutans N29]
gi|449185895|gb|EMB87761.1| hypothetical protein SMU57_09016 [Streptococcus mutans NMT4863]
gi|449198596|gb|EMB99703.1| hypothetical protein SMU66_06269 [Streptococcus mutans N34]
gi|449212369|gb|EMC12738.1| hypothetical protein SMU75_02280 [Streptococcus mutans N3209]
gi|449221943|gb|EMC21689.1| hypothetical protein SMU80_02083 [Streptococcus mutans SF1]
gi|449224980|gb|EMC24600.1| hypothetical protein SMU81_00885 [Streptococcus mutans SF14]
gi|449234598|gb|EMC33600.1| hypothetical protein SMU89_03573 [Streptococcus mutans NLML1]
gi|449240741|gb|EMC39400.1| hypothetical protein SMU94_03951 [Streptococcus mutans 66-2A]
gi|449242638|gb|EMC41203.1| hypothetical protein SMU95_00390 [Streptococcus mutans B]
gi|449245469|gb|EMC43805.1| hypothetical protein SMU98_05112 [Streptococcus mutans SM1]
gi|449245829|gb|EMC44153.1| hypothetical protein SMU97_03931 [Streptococcus mutans SM4]
gi|449251629|gb|EMC49636.1| hypothetical protein SMU102_06269 [Streptococcus mutans S1B]
gi|449251814|gb|EMC49815.1| hypothetical protein SMU103_02491 [Streptococcus mutans SA38]
gi|449256535|gb|EMC54354.1| hypothetical protein SMU105_02467 [Streptococcus mutans SF12]
Length = 139
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|290579658|ref|YP_003484050.1| hypothetical protein SmuNN2025_0132 [Streptococcus mutans NN2025]
gi|449943161|ref|ZP_21806307.1| hypothetical protein SMU3_06027 [Streptococcus mutans 11A1]
gi|449970549|ref|ZP_21813884.1| hypothetical protein SMU41_05495 [Streptococcus mutans 2VS1]
gi|450031387|ref|ZP_21833662.1| hypothetical protein SMU61_08485 [Streptococcus mutans G123]
gi|450055660|ref|ZP_21841892.1| hypothetical protein SMU69_00861 [Streptococcus mutans NLML4]
gi|450067332|ref|ZP_21846566.1| hypothetical protein SMU72_05195 [Streptococcus mutans NLML9]
gi|450091521|ref|ZP_21855515.1| hypothetical protein SMU78_00700 [Streptococcus mutans W6]
gi|450117037|ref|ZP_21864802.1| hypothetical protein SMU83_07633 [Streptococcus mutans ST1]
gi|450147869|ref|ZP_21875321.1| hypothetical protein SMU92_01687 [Streptococcus mutans 14D]
gi|254996557|dbj|BAH87158.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449149594|gb|EMB53388.1| hypothetical protein SMU3_06027 [Streptococcus mutans 11A1]
gi|449173218|gb|EMB75803.1| hypothetical protein SMU41_05495 [Streptococcus mutans 2VS1]
gi|449191699|gb|EMB93166.1| hypothetical protein SMU61_08485 [Streptococcus mutans G123]
gi|449207111|gb|EMC07792.1| hypothetical protein SMU69_00861 [Streptococcus mutans NLML4]
gi|449208118|gb|EMC08742.1| hypothetical protein SMU72_05195 [Streptococcus mutans NLML9]
gi|449219225|gb|EMC19199.1| hypothetical protein SMU78_00700 [Streptococcus mutans W6]
gi|449226531|gb|EMC26053.1| hypothetical protein SMU83_07633 [Streptococcus mutans ST1]
gi|449236459|gb|EMC35375.1| hypothetical protein SMU92_01687 [Streptococcus mutans 14D]
Length = 139
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAILITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|450120811|ref|ZP_21865926.1| hypothetical protein SMU85_03340 [Streptococcus mutans ST6]
gi|449229841|gb|EMC29131.1| hypothetical protein SMU85_03340 [Streptococcus mutans ST6]
Length = 139
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|380876974|sp|Q5N0K8.2|MRNC_SYNP6 RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
Length = 138
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YE + R L P + + V+ VR E Q LL LL +AEE +
Sbjct: 27 ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLPLL--TAEELE 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+VR G+N A R RR Y +A+ LETL GYLYL +
Sbjct: 85 IVRRGRN---AAGRVPRRLTGEYYQQATGLETLLGYLYLCD 122
>gi|449899733|ref|ZP_21791203.1| hypothetical protein SMU107_08485 [Streptococcus mutans R221]
gi|450089031|ref|ZP_21855001.1| hypothetical protein SMU77_08206 [Streptococcus mutans NV1996]
gi|450126762|ref|ZP_21868341.1| hypothetical protein SMU86_05828 [Streptococcus mutans U2A]
gi|449216031|gb|EMC16187.1| hypothetical protein SMU77_08206 [Streptococcus mutans NV1996]
gi|449231241|gb|EMC30444.1| hypothetical protein SMU86_05828 [Streptococcus mutans U2A]
gi|449257983|gb|EMC55589.1| hypothetical protein SMU107_08485 [Streptococcus mutans R221]
Length = 139
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIERLEELI 122
>gi|33865562|ref|NP_897121.1| hypothetical protein SYNW1028 [Synechococcus sp. WH 8102]
gi|33632731|emb|CAE07543.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 141
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LA++GD ++EL+ R F P + + V+A V E Q L +L D LS +ERD+
Sbjct: 22 LAWLGDAVWELHQRLRFCRSPGRADVLHRAVVAKVCAEAQAEALGRL--DPVLSEQERDL 79
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
V + + R +R+ AAVY A+ ET+ G+LYL + RL +++ L
Sbjct: 80 V---RRGRNRAGRGPKRSDAAVYGLATGFETMVGWLYLNDPARLAELLDHL 127
>gi|339640143|ref|ZP_08661587.1| RNase3 domain protein [Streptococcus sp. oral taxon 056 str. F0418]
gi|339453412|gb|EGP66027.1| RNase3 domain protein [Streptococcus sp. oral taxon 056 str. F0418]
Length = 134
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMTGAIERLEELI 119
>gi|375310826|ref|ZP_09776091.1| ribonuclease III [Paenibacillus sp. Aloe-11]
gi|375077194|gb|EHS55437.1| ribonuclease III [Paenibacillus sp. Aloe-11]
Length = 152
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQ 161
W P P KP + +LAYIGD +YE+ R++ L P L + R +V + Q
Sbjct: 17 WFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAQPNLRPNHLHRRATGLVSAKAQ 74
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
+L L + L+ EE D+VR G+N S + + A Y A++LE L G+LY
Sbjct: 75 SRMLGLL--EKVLTEEESDIVRQGRNAKSGS--LPKNADVLEYRHATALEALIGFLY 127
>gi|296131812|ref|YP_003639059.1| ribonuclease III [Thermincola potens JR]
gi|296030390|gb|ADG81158.1| ribonuclease III [Thermincola potens JR]
Length = 151
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
A LAYIGD IYE+Y R++ + L+ + E + R +A V TQ ++ L + L+ +
Sbjct: 14 ALVLAYIGDAIYEVYVRQYLISRGLTKVSELHKRSVAFVNAATQAKIVHAL--EGKLAPD 71
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
E DVV+ G+N S + G Y ++ E+L GYLYL RLE++ +
Sbjct: 72 EVDVVKRGRNAKSGT--VPKNMGVIDYRYGTAFESLFGYLYLCGKTKRLEEIFA 123
>gi|255070225|ref|XP_002507194.1| ribonuclease III domain-containing protein [Micromonas sp. RCC299]
gi|226522469|gb|ACO68452.1| ribonuclease III domain-containing protein [Micromonas sp. RCC299]
Length = 268
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPLSIEE--YNNRVMAVVRCETQDAL---------LQK 167
A + Y+GD ++ELYARRH + ++ Y+ V+ + T+ L++
Sbjct: 75 ALAYTYLGDAVWELYARRHMILQRATVASLPYSTNVVLRPQEATKQGWSSSIAMCGHLRR 134
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLED 227
LLN + ++ +E ++ WG++ G + R + AS+LE L Y YL + NRL
Sbjct: 135 LLNGTMITDDELTILEWGRDYGH---ECRSRHNKVQHKEASALEALIAYWYLFDQNRLHS 191
Query: 228 VMSKLGFT 235
V+ LG +
Sbjct: 192 VLLHLGMS 199
>gi|302390938|ref|YP_003826758.1| ribonuclease III [Acetohalobium arabaticum DSM 5501]
gi|302203015|gb|ADL11693.1| ribonuclease III [Acetohalobium arabaticum DSM 5501]
Length = 136
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLN 170
+PR +F+ ++AYIGD IYE++ R + + L + + + V Q LLQ+L
Sbjct: 11 RPR-LFSPETMAYIGDSIYEVFIRSYLIEQGLRKGNSLHQQAVKYVNAGAQAELLQQL-- 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+SYL+ EE +VR G+N S + + A Y +++ E L GYLYL RLE+V+
Sbjct: 68 ESYLTEEEEAIVRRGRNSNSGS--VPKNADVVDYRYSTAFEALLGYLYLEGKKVRLEEVL 125
Query: 230 SKL 232
+++
Sbjct: 126 TEI 128
>gi|422850116|ref|ZP_16896792.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|422856505|ref|ZP_16903161.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|422866328|ref|ZP_16912953.1| ribonuclease III [Streptococcus sanguinis SK1058]
gi|325689004|gb|EGD31012.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|327460676|gb|EGF07011.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|327488751|gb|EGF20550.1| ribonuclease III [Streptococcus sanguinis SK1058]
Length = 130
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L + +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGF 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|332982043|ref|YP_004463484.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699721|gb|AEE96662.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 136
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQK 167
++ + R + ++LAYIGD +YEL+ R + + +S E N + +A+V + Q +L++
Sbjct: 8 RLERCRHDMSPSTLAYIGDAVYELFVRTYMVTRYDISPHELNKKTVALVNAKAQAEMLKR 67
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
L + L+ +E D+VR G+N S+N R Y A+ E L GYLYL
Sbjct: 68 L--EGMLNEQEIDIVRRGRNTKSSN--VPRHTSPIQYRYATGFEALIGYLYL 115
>gi|154684613|ref|YP_001419774.1| hypothetical protein RBAM_001200 [Bacillus amyloliquefaciens FZB42]
gi|375360785|ref|YP_005128824.1| ribonuclease III family protein [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384263725|ref|YP_005419432.1| ribonuclease for 23S RNA maturation [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|385267122|ref|ZP_10045209.1| RNase3 domain-containing protein [Bacillus sp. 5B6]
gi|387896623|ref|YP_006326919.1| putative ribonuclease III [Bacillus amyloliquefaciens Y2]
gi|394994766|ref|ZP_10387473.1| YazC [Bacillus sp. 916]
gi|421733027|ref|ZP_16172142.1| putative ribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429503629|ref|YP_007184813.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|452854158|ref|YP_007495841.1| ribonuclease for 23S RNA maturation [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|154350464|gb|ABS72543.1| YazC [Bacillus amyloliquefaciens FZB42]
gi|371566779|emb|CCF03629.1| ribonuclease III family protein [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497078|emb|CCG48116.1| ribonuclease for 23S RNA maturation [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|385151618|gb|EIF15555.1| RNase3 domain-containing protein [Bacillus sp. 5B6]
gi|387170733|gb|AFJ60194.1| putative ribonuclease III [Bacillus amyloliquefaciens Y2]
gi|393804333|gb|EJD65745.1| YazC [Bacillus sp. 916]
gi|407073068|gb|EKE46066.1| putative ribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429485219|gb|AFZ89143.1| putative ribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452078418|emb|CCP20168.1| ribonuclease for 23S RNA maturation [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 143
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAY+GD I+E+Y R H L + + + + +V ++Q +L +L +
Sbjct: 8 KDSKQLNGLALAYMGDAIFEIYVRHHLLKQGFTKPNDLHKKASRIVSAKSQADILFRLQD 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+S+ + EE V+R G+N S T + Y +++ E L GYL+L
Sbjct: 68 ESFFTEEEEAVLRRGRNAKSGT--TPKNTDVQTYRHSTAFEALLGYLFL 114
>gi|257866302|ref|ZP_05645955.1| ribonuclease III [Enterococcus casseliflavus EC30]
gi|257873182|ref|ZP_05652835.1| ribonuclease III [Enterococcus casseliflavus EC10]
gi|257800260|gb|EEV29288.1| ribonuclease III [Enterococcus casseliflavus EC30]
gi|257807346|gb|EEV36168.1| ribonuclease III [Enterococcus casseliflavus EC10]
Length = 140
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R + + + + ++ V + Q AL+QK+L++ L+
Sbjct: 7 LNGLALAYVGDAVYEVYIRDYLVAQGQTRPNQLHHMATHYVSAKAQAALIQKMLDEEILT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
EE D R G+N S + + A Y A+ E+L GYL+LT RL++++
Sbjct: 67 EEEHDFYRRGRN--SKSHTGAKNADVTTYRIATGFESLIGYLHLTQQQERLDELI 119
>gi|392429268|ref|YP_006470280.1| hypothetical protein SCIM_1378 [Streptococcus intermedius JTH08]
gi|419776126|ref|ZP_14302049.1| ribonuclease III domain protein [Streptococcus intermedius SK54]
gi|383846334|gb|EID83733.1| ribonuclease III domain protein [Streptococcus intermedius SK54]
gi|391758415|dbj|BAM24032.1| conserved hypothetical protein [Streptococcus intermedius JTH08]
Length = 134
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHRKATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E ++ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEEIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMTGAIERLEELI 119
>gi|357051596|ref|ZP_09112770.1| hypothetical protein HMPREF9478_02753 [Enterococcus saccharolyticus
30_1]
gi|355379520|gb|EHG26677.1| hypothetical protein HMPREF9478_02753 [Enterococcus saccharolyticus
30_1]
Length = 146
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y R + + + + ++ V + Q AL+QK+L++ ++
Sbjct: 7 LNGLALAYIGDAVYEVYIRDYLIEQGQTRPNQLHHMATHYVSAKAQAALIQKMLDEEIMT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
EE D R G+N S + + + A Y A+ E+L GYL+LT +RL+ +++
Sbjct: 67 EEEYDFYRRGRN--SKSHTSAKNADVTTYRIATGFESLIGYLHLTKQQDRLDTLVA 120
>gi|257871415|ref|ZP_05651068.1| ribonuclease III [Enterococcus gallinarum EG2]
gi|257805579|gb|EEV34401.1| ribonuclease III [Enterococcus gallinarum EG2]
Length = 146
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +YE+Y R + + + + ++ V + Q AL+QK+L++ ++
Sbjct: 7 LNGLALAYIGDAVYEVYIRDYLIEQGQTRPNQLHHMATHYVSAKAQAALIQKMLDEEIMT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
EE D R G+N S + + + A Y A+ E+L GYL+LT +RL+ +++
Sbjct: 67 EEEYDFYRRGRN--SKSHTSAKNADVTTYRIATGFESLIGYLHLTKQQDRLDTLVA 120
>gi|257875921|ref|ZP_05655574.1| ribonuclease III [Enterococcus casseliflavus EC20]
gi|257810087|gb|EEV38907.1| ribonuclease III [Enterococcus casseliflavus EC20]
Length = 140
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R + + + + ++ V + Q AL+QK+L++ L+
Sbjct: 7 LNGLALAYVGDAVYEVYIRDYLVAQGQTRPNQLHHMATHYVSAKAQAALIQKMLDEEILT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
EE D R G+N S + + A Y A+ E+L GYL+LT RL++++
Sbjct: 67 EEEHDFYRRGRN--SKSHTGAKNADVTTYRIATGFESLIGYLHLTQQKERLDELI 119
>gi|336112778|ref|YP_004567545.1| ribonuclease III [Bacillus coagulans 2-6]
gi|335366208|gb|AEH52159.1| ribonuclease III [Bacillus coagulans 2-6]
Length = 141
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + V + Q +L++++N+ L+
Sbjct: 14 LNSLALAYMGDAVYEEYIRHHVLLQGKTKPNRLHREAIRFVSAKAQAQVLKQMMNEDLLT 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK-LG 233
EE VVR G+N S + Y +++ E L GY YL+ + R+E ++ K +G
Sbjct: 74 EEETAVVRRGRNAKSGT--VPKNTDVQTYRHSTAFEALIGYHYLSGSRERMEALIEKAIG 131
Query: 234 FTNGS 238
G
Sbjct: 132 IVEGQ 136
>gi|451348515|ref|YP_007447146.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449852273|gb|AGF29265.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 143
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAY+GD I+E+Y R H L + + + + +V ++Q +L +L +
Sbjct: 8 KDSKQLNGLALAYMGDAIFEIYVRHHLLKQGFTKPNDLHKKASRIVSAKSQADILFRLQD 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+S+ + EE V+R G+N S T + Y +++ E L GYL+L
Sbjct: 68 ESFFTEEEEAVLRRGRNAKSGT--TPKNTDVQTYRHSTAFEALLGYLFL 114
>gi|397906392|ref|ZP_10507200.1| COG1939: Ribonuclease III family protein [Caloramator australicus
RC3]
gi|397160561|emb|CCJ34537.1| COG1939: Ribonuclease III family protein [Caloramator australicus
RC3]
Length = 139
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K ++ N AY+GD +YE+Y R + + + + + + V+ Q LL+ LLN
Sbjct: 14 KNVNLLNPLIWAYVGDAVYEMYVRTYLISQGVKRPHDIHVESVKFVKAANQSKLLEILLN 73
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
YL+ EE ++VR G+N S + + A Y RA++LE L GYLYL + D +
Sbjct: 74 --YLTEEEIEIVRRGRNAKSYHV--PKNANVMDYRRATALEALFGYLYLNKRSERIDELF 129
Query: 231 KLGFTN 236
K+ F N
Sbjct: 130 KIIFEN 135
>gi|125718832|ref|YP_001035965.1| hypothetical protein SSA_2042 [Streptococcus sanguinis SK36]
gi|125498749|gb|ABN45415.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 134
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L + +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGF 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELIG 120
>gi|308171986|ref|YP_003918691.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7]
gi|384157708|ref|YP_005539781.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens TA208]
gi|384162502|ref|YP_005543881.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens LL3]
gi|384166724|ref|YP_005548102.1| hypothetical protein BAXH7_00102 [Bacillus amyloliquefaciens XH7]
gi|307604850|emb|CBI41221.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens DSM 7]
gi|328551796|gb|AEB22288.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens TA208]
gi|328910057|gb|AEB61653.1| RNase Mini-III MrnC [Bacillus amyloliquefaciens LL3]
gi|341826003|gb|AEK87254.1| hypothetical protein BAXH7_00102 [Bacillus amyloliquefaciens XH7]
Length = 143
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAY+GD I+E+Y R H L + + + + +V ++Q +L +L +
Sbjct: 8 KDSKQLNGLALAYMGDAIFEIYVRHHLLKQGHTKPNDLHKKASRIVSAKSQADILFRLQD 67
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+S+ + EE V+R G+N S T + Y +++ E L GYL+L RL+ ++
Sbjct: 68 ESFFTEEEEAVLRRGRNAKSGT--TPKNTDVQTYRHSTAFEALLGYLFLEKREERLDQLI 125
Query: 230 SK 231
++
Sbjct: 126 TE 127
>gi|78779234|ref|YP_397346.1| hypothetical protein PMT9312_0850 [Prochlorococcus marinus str. MIT
9312]
gi|78712733|gb|ABB49910.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 132
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQ 161
W+ N G P + LA++GD ++EL+ R RH F PL +E + V+ V+ E+Q
Sbjct: 4 WIQNLAPYGAPDEI-GVIQLAWLGDSVWELHQRLRHIHF-PLKSKELHLSVVNEVKAESQ 61
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L ++ + L+ E D++R +N + + + +Y+RA+ ETL G+L+L +
Sbjct: 62 SKSLSQI--EHLLNENEMDLIRRARN---KTKKYPKSSNPTIYSRATGFETLIGWLFLKD 116
Query: 222 ANRLEDVMSKL 232
RL + L
Sbjct: 117 PQRLSALFEHL 127
>gi|325567614|ref|ZP_08144281.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|325159047|gb|EGC71193.1| ribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 140
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R + + + + ++ V + Q AL+QK+L++ L+
Sbjct: 7 LNGLALAYVGDAVYEVYIRDYLVAQGQTRPNQLHHMATHYVSAKAQAALIQKMLDEEILT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
EE D R G+N S + + A Y A+ E+L GYL+LT RL++++
Sbjct: 67 EEEHDFYRRGRN--SKSHTGAKNADVTTYRIATGFESLIGYLHLTQQKERLDELV 119
>gi|422863424|ref|ZP_16910055.1| ribonuclease III [Streptococcus sanguinis SK408]
gi|327472398|gb|EGF17829.1| ribonuclease III [Streptococcus sanguinis SK408]
Length = 130
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A +RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIDRLEELI 119
>gi|303274560|ref|XP_003056599.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462683|gb|EEH59975.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 288
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 25/149 (16%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDAL-----------LQK 167
A + Y+GD ++ELYAR+H + + V+R + L L +
Sbjct: 113 ALAYTYLGDAVWELYARQHMILRSAEKAGRTSPCGTVIRPQEATKLNWCSSVAMSDHLAR 172
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYLTNANRL 225
LL D ++ +E ++ WG+N G + R+G + ASSLE L Y YL + +RL
Sbjct: 173 LLADGTITDDEISILEWGRNFGHES-----RSGHKTLQHREASSLEALIAYWYLFDQDRL 227
Query: 226 EDVMSKLGFTNGSSTQMILEEANSKLTTV 254
V+S LG ++ + S+LT+V
Sbjct: 228 HLVLSHLGM-------ILCRQPVSQLTSV 249
>gi|258512690|ref|YP_003186124.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479416|gb|ACV59735.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 137
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 121 SLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LA++GD ++E+YAR H L P ++ R ++ V LL+ +L D+
Sbjct: 14 ALAFLGDAVWEIYARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTDA---- 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDV 228
ERDV+R G+N S++TR R VY A+ E L GYLY T RL+++
Sbjct: 70 -ERDVIRRGRNQKSSHTR--RNVDVVVYRLATGFEALVGYLYATGERERLDEI 119
>gi|301299873|ref|ZP_07206107.1| RNase3 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852544|gb|EFK80194.1| RNase3 domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 135
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y RRH L L+ + +++ + V + Q L++K+ + L+
Sbjct: 12 NGIALAYVGDAIYEIYIRRHLLAKGLTKPTKLHHKAIHYVSAKAQAFLIEKMQEQNVLND 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDV 228
EE + + G+N S + + Y ++ E L GYLYL++ RLE++
Sbjct: 72 EELEFFKRGRNAKSHT--SAKNTSVVTYRISTGFEALFGYLYLSDQIERLEEL 122
>gi|335038723|ref|ZP_08531937.1| ribonuclease III [Caldalkalibacillus thermarum TA2.A1]
gi|334181387|gb|EGL83938.1| ribonuclease III [Caldalkalibacillus thermarum TA2.A1]
Length = 137
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQD 162
LP+ P ++N +LAY+GD +YE+Y R H L + V + Q
Sbjct: 4 LPHSP------HLYNGLTLAYVGDAVYEVYVRVHLLELGKTQAYRLHQAATRYVSAKAQA 57
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
+L L ++ L+ EE D+VR G+N A RT + A Y ++ E+L GYLYL
Sbjct: 58 KVLSCWLEENVLTEEELDIVRRGRN---AKVRTVPKHTDLATYRLGTAFESLIGYLYLKQ 114
Query: 222 -ANRLEDVMSK 231
RLE ++ +
Sbjct: 115 RIQRLETLIQQ 125
>gi|313884750|ref|ZP_07818505.1| RNase3 domain protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312620011|gb|EFR31445.1| RNase3 domain protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 132
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQ-DALLQKLLNDSY 173
+ N ++LAYIGD IYE+ R+H L L S+ + + + V + Q +L L D +
Sbjct: 8 LLNGSALAYIGDAIYEVAVRQHVLASGLTSVNDLHRAAIKYVGAKGQAQVMLAWLAEDGF 67
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
LS EE + G+N ANT+ K A Y +A+ E+L G+L+L++ RL+ +MS
Sbjct: 68 LSEEEISFYKRGRN-HKANTKAK-NASIQDYRQATGFESLMGWLFLSHQEERLQALMS 123
>gi|410658553|ref|YP_006910924.1| hypothetical protein DHBDCA_p1913 [Dehalobacter sp. DCA]
gi|410661540|ref|YP_006913911.1| hypothetical protein DCF50_p1924 [Dehalobacter sp. CF]
gi|409020908|gb|AFV02939.1| hypothetical protein DHBDCA_p1913 [Dehalobacter sp. DCA]
gi|409023896|gb|AFV05926.1| hypothetical protein DCF50_p1924 [Dehalobacter sp. CF]
Length = 177
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQK 167
++ K N LAYIGD +YEL+ R+H L ++ ++ + R + V+ +TQ +L+
Sbjct: 20 QINKRWQDINILLLAYIGDAVYELWVRKHLLEQDIAKVQLMHKRAIFYVQAKTQAGILRH 79
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+N+ L E +VV G+N A R Y +++ E L GY ++T N
Sbjct: 80 LMNE--LDETETEVVLRGRN---AKGHYPRSVDVVTYRHSTAFEALIGYWHITGKN 130
>gi|390456400|ref|ZP_10241928.1| ribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 152
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQ 161
W P P KP + +LAYIGD +YE+ R++ L P L + R +V + Q
Sbjct: 17 WFPYP--ASKPARLMPPIALAYIGDAVYEVAVRQYLLAQPNLRPNHLHRRATGLVSAKAQ 74
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
+L L + L+ EE D+VR G+N S + + A Y A++LE L G+LY
Sbjct: 75 SRMLGLL--EKVLTEEECDIVRQGRNAKSGS--LPKNADVLEYRHATALEALIGFLY 127
>gi|407978594|ref|ZP_11159423.1| ribonuclease III [Bacillus sp. HYC-10]
gi|407414790|gb|EKF36416.1| ribonuclease III [Bacillus sp. HYC-10]
Length = 143
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD I+E+Y R H L + E + R +V ++Q A+L +L + +
Sbjct: 13 LNGLALAYMGDAIFEVYVRHHLLQTGATKPNELHKRASKIVSAKSQAAILFELQQKGFFT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E V++ G+N S + Y ++S E L GYL++ + RLE+++S+
Sbjct: 73 EAEEAVLKRGRNAKSGT--VPKNTDVQTYRYSTSFEALMGYLFIEKQDERLEELISQ 127
>gi|172056120|ref|YP_001812580.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
gi|171988641|gb|ACB59563.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE++ R L E + + VR + Q ++ LN++ L+
Sbjct: 7 LNALALAYMGDVVYEMHVRERLLEKGFVKPGELHQAAIRYVRAQAQAFVVTHWLNENTLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE+ VVR GKN S + + Y A++ E L GY+YL +RLE+++ +
Sbjct: 67 EEEQAVVRRGKNAKSGS--VPKSTDVHTYRYATAFEALLGYIYLAEGGDRLEELIGQ 121
>gi|407475973|ref|YP_006789850.1| ribonuclease III [Exiguobacterium antarcticum B7]
gi|407060052|gb|AFS69242.1| Ribonuclease III [Exiguobacterium antarcticum B7]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R L + + + VR + Q ++ LN L+
Sbjct: 7 LNALALAYMGDVVYELHVRERLLDQGFVKPGDLHQAAIRYVRAQAQAFVVTHWLNTDTLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE+ VVR GKN S + + Y A++ E L GY+YL+ NRLE+++ +
Sbjct: 67 EEEQAVVRRGKNAKSGSV--PKSTDVHTYRYATAFEALLGYVYLSKGGNRLEELIGQ 121
>gi|450110470|ref|ZP_21862102.1| hypothetical protein SMU82_03706 [Streptococcus mutans SM6]
gi|449225106|gb|EMC24721.1| hypothetical protein SMU82_03706 [Streptococcus mutans SM6]
Length = 139
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F L+ + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N A++ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ADSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIERLEELI 122
>gi|167629447|ref|YP_001679946.1| hypothetical protein HM1_1358 [Heliobacterium modesticaldum Ice1]
gi|167592187|gb|ABZ83935.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 170
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 121 SLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YEL+ RR + + + + + + + +VR +Q ALL+++ + +L EE+
Sbjct: 35 ALAYLGDAVYELWVRRTLIEVGVVKVAQLHKQAVEIVRAASQVALLRRI--EPFLDDEEK 92
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRL 225
+ VR G+N S R+ R A Y ++ E L GY L RL
Sbjct: 93 EWVRRGRNADSG--RSPRSTDVATYRLSTGFECLVGYWSLARPERL 136
>gi|343525333|ref|ZP_08762288.1| RNase3 domain protein [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343395603|gb|EGV08141.1| RNase3 domain protein [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E ++ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEEIYKRGRN---ANSHTKAKNADIITYRMSTGFEAIMGYLHMTGAIERLEELI 119
>gi|315640329|ref|ZP_07895446.1| ribonuclease III [Enterococcus italicus DSM 15952]
gi|315483991|gb|EFU74470.1| ribonuclease III [Enterococcus italicus DSM 15952]
Length = 136
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + L+ + + V + Q L+Q++ + L+
Sbjct: 12 LNGLALAYVGDAIYEVYVRDYLIQSGLTRPNQLHKTATHYVSAKAQAKLIQQMNEQALLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE+D+ R G+N S + + + A Y ++ E L GYL+LT RLE++ +
Sbjct: 72 EEEQDIFRRGRN--SKSYTSAKNADIITYRISTGFEALMGYLHLTGQKERLEELVQWCIE 129
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 130 KVGEENG 136
>gi|422884839|ref|ZP_16931287.1| ribonuclease III [Streptococcus sanguinis SK49]
gi|332359269|gb|EGJ37090.1| ribonuclease III [Streptococcus sanguinis SK49]
Length = 130
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|315221316|ref|ZP_07863239.1| RNase3 domain protein [Streptococcus anginosus F0211]
gi|319939875|ref|ZP_08014230.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
gi|335031000|ref|ZP_08524469.1| RNase3 domain protein [Streptococcus anginosus SK52 = DSM 20563]
gi|418962939|ref|ZP_13514787.1| RNase3 domain protein [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|315189675|gb|EFU23367.1| RNase3 domain protein [Streptococcus anginosus F0211]
gi|319810886|gb|EFW07205.1| cysteinyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
gi|333770809|gb|EGL47802.1| RNase3 domain protein [Streptococcus anginosus SK52 = DSM 20563]
gi|383344708|gb|EID22863.1| RNase3 domain protein [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y RRH +F L+ + + V Q L+ ++L +
Sbjct: 5 NLINGIALAFEGDAIYSTYIRRHLIFQGLTKPNQLHREATKYVSARAQANLISQMLEEKI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T+ RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVLGYLHMTDQIKRLEELID 120
>gi|421489744|ref|ZP_15937120.1| ribonuclease III domain protein [Streptococcus anginosus SK1138]
gi|400374332|gb|EJP27251.1| ribonuclease III domain protein [Streptococcus anginosus SK1138]
Length = 134
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y RRH +F L+ + + V Q L+ ++L +
Sbjct: 5 NLINGIALAFEGDAIYSTYIRRHLIFQGLTKPNQLHREATKYVSARAQANLISQMLEEKI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T+ RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVLGYLHMTDQIKRLEELID 120
>gi|397648941|ref|YP_006489468.1| hypothetical protein SMUGS5_00690 [Streptococcus mutans GS-5]
gi|449914383|ref|ZP_21795605.1| hypothetical protein SMU20_01114 [Streptococcus mutans 15JP3]
gi|449937642|ref|ZP_21804682.1| hypothetical protein SMU29_07523 [Streptococcus mutans 2ST1]
gi|449996459|ref|ZP_21823550.1| hypothetical protein SMU54_05768 [Streptococcus mutans A9]
gi|450041807|ref|ZP_21837517.1| hypothetical protein SMU63_08359 [Streptococcus mutans T4]
gi|450154984|ref|ZP_21878000.1| hypothetical protein SMU93_05434 [Streptococcus mutans 21]
gi|392602510|gb|AFM80674.1| hypothetical protein SMUGS5_00690 [Streptococcus mutans GS-5]
gi|449158094|gb|EMB61518.1| hypothetical protein SMU20_01114 [Streptococcus mutans 15JP3]
gi|449164047|gb|EMB67129.1| hypothetical protein SMU29_07523 [Streptococcus mutans 2ST1]
gi|449183104|gb|EMB85100.1| hypothetical protein SMU54_05768 [Streptococcus mutans A9]
gi|449197414|gb|EMB98590.1| hypothetical protein SMU63_08359 [Streptococcus mutans T4]
gi|449237473|gb|EMC36317.1| hypothetical protein SMU93_05434 [Streptococcus mutans 21]
Length = 139
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R++ +F L+ + +++ V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKYLIFQGLTKPNQLHHKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 122
>gi|157413276|ref|YP_001484142.1| hypothetical protein P9215_09411 [Prochlorococcus marinus str. MIT
9215]
gi|157387851|gb|ABV50556.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9215]
Length = 132
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
W+ N G P + LA++GD ++EL+ R + PL +E + V+ V+ ++Q
Sbjct: 4 WIQNLVPYGSPEDI-GVIQLAWLGDSVWELHQRLRHVHYPLKSKELHLSVVNEVKAKSQS 62
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L ++ + L++ E D++R +N R + + ++Y+RA+ ETL G+L+L +
Sbjct: 63 KSLSQI--EHLLNSNEIDLIRRARN---KTKRYPKSSNPSIYSRATGFETLIGWLFLKDP 117
Query: 223 NRLEDVMSKL 232
RL + L
Sbjct: 118 QRLSTLFEYL 127
>gi|422857609|ref|ZP_16904259.1| ribonuclease III [Streptococcus sanguinis SK1057]
gi|327462792|gb|EGF09114.1| ribonuclease III [Streptococcus sanguinis SK1057]
Length = 130
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|323350501|ref|ZP_08086163.1| ribonuclease III [Streptococcus sanguinis VMC66]
gi|322123183|gb|EFX94868.1| ribonuclease III [Streptococcus sanguinis VMC66]
Length = 130
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|322386162|ref|ZP_08059795.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
gi|417921309|ref|ZP_12564801.1| RNase3 domain protein [Streptococcus cristatus ATCC 51100]
gi|321269742|gb|EFX52669.1| ribonuclease III [Streptococcus cristatus ATCC 51100]
gi|342834469|gb|EGU68738.1| RNase3 domain protein [Streptococcus cristatus ATCC 51100]
Length = 130
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|228477805|ref|ZP_04062433.1| ribonuclease III family protein [Streptococcus salivarius SK126]
gi|340397951|ref|YP_004726976.1| ribonuclease III family protein [Streptococcus salivarius CCHSS3]
gi|387762185|ref|YP_006069162.1| ribonuclease III family protein [Streptococcus salivarius 57.I]
gi|418016971|ref|ZP_12656530.1| ribonuclease III family protein [Streptococcus salivarius M18]
gi|421451478|ref|ZP_15900839.1| hypothetical protein RSSL_01377 [Streptococcus salivarius K12]
gi|228250497|gb|EEK09711.1| ribonuclease III family protein [Streptococcus salivarius SK126]
gi|338741944|emb|CCB92449.1| ribonuclease III family protein [Streptococcus salivarius CCHSS3]
gi|339292952|gb|AEJ54299.1| ribonuclease III family protein [Streptococcus salivarius 57.I]
gi|345527664|gb|EGX30972.1| ribonuclease III family protein [Streptococcus salivarius M18]
gi|400181909|gb|EJO16171.1| hypothetical protein RSSL_01377 [Streptococcus salivarius K12]
Length = 133
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMLEQEL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE++++
Sbjct: 68 LTEKELDIYKRGRN---ANSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDIARLEELIA 123
>gi|347751614|ref|YP_004859179.1| ribonuclease III [Bacillus coagulans 36D1]
gi|347584132|gb|AEP00399.1| ribonuclease III [Bacillus coagulans 36D1]
Length = 137
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + V + Q +L++++N++ L+
Sbjct: 10 LNSLALAYMGDAVYEEYIRHHVLLQGKTKPNRLHREAIRFVSAKAQAQILKQMMNENLLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE VVR G+N S + Y +++ E L GY YL+ + R+E ++ K
Sbjct: 70 EEETAVVRRGRNAKSGT--VPKNTDVQTYRHSTAFEALIGYHYLSGSRERMEALIKK 124
>gi|419706819|ref|ZP_14234328.1| Ribonuclease III family protein [Streptococcus salivarius PS4]
gi|383283454|gb|EIC81409.1| Ribonuclease III family protein [Streptococcus salivarius PS4]
Length = 133
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L+
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMLDQEV 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A++ TK + Y ++ E + GYL++T + RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AHSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDLTRLEELIT 123
>gi|427701746|ref|YP_007044968.1| hypothetical protein Cyagr_0435 [Cyanobium gracile PCC 6307]
gi|427344914|gb|AFY27627.1| hypothetical protein Cyagr_0435 [Cyanobium gracile PCC 6307]
Length = 135
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 124 YIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVR 183
++GD ++EL+ R P + + V+ V+ E Q L++L D LS ER VV
Sbjct: 20 WLGDAVWELHQRLRHCRQPAKAADLHRAVVGEVQAEAQAEALRRL--DPLLSEAERRVVL 77
Query: 184 WGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSS 239
G+N R RR Y +A+ ET+ G+L+L + RL +++ L T S
Sbjct: 78 RGRNQAG---RGPRRGAPQAYGQATGFETMLGWLFLQDPRRLAELLDHLEKTEPRS 130
>gi|422850779|ref|ZP_16897449.1| ribonuclease III [Streptococcus sanguinis SK150]
gi|325695527|gb|EGD37427.1| ribonuclease III [Streptococcus sanguinis SK150]
Length = 130
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|116618912|ref|YP_819283.1| ribonuclease III family protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381337221|ref|YP_005174996.1| ribonuclease III family protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116097759|gb|ABJ62910.1| Ribonuclease III family protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|356645187|gb|AET31030.1| ribonuclease III family protein [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 127
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N SLAYIGD IYEL RRH L L+ + E R V + AL ++++ + L+
Sbjct: 1 MNGLSLAYIGDAIYELEVRRHLLSLGLTKVNELQKRSKHYVSAKAHAALFEQMMVSNILT 60
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
+E D + G+N A + TK + Y ++ +E L GYLY++ + R+ ++M+
Sbjct: 61 DDELDYFKRGRN---AKSHTKAKNTDVITYRISTGVEALFGYLYMSEQHERILELMT 114
>gi|322374190|ref|ZP_08048723.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Streptococcus sp. C150]
gi|321276895|gb|EFX53967.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Streptococcus sp. C150]
Length = 133
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L+
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMLDQEV 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A++ TK + Y ++ E + GYL++T + RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AHSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDLTRLEELIT 123
>gi|387783223|ref|YP_006069306.1| ribonuclease III family protein [Streptococcus salivarius JIM8777]
gi|338744105|emb|CCB94471.1| ribonuclease III family protein [Streptococcus salivarius JIM8777]
Length = 133
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L
Sbjct: 8 NLLNGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMLEQEL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE++++
Sbjct: 68 LTEKELDIYKRGRN---ANSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDIARLEELVA 123
>gi|313889607|ref|ZP_07823251.1| RNase3 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|416852890|ref|ZP_11910035.1| RNase3 domain protein [Streptococcus pseudoporcinus LQ 940-04]
gi|313122034|gb|EFR45129.1| RNase3 domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|356740379|gb|EHI65611.1| RNase3 domain protein [Streptococcus pseudoporcinus LQ 940-04]
Length = 131
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LA+ GD +Y Y R+H +F P + R V + Q +L+QK+L
Sbjct: 8 LINGIALAFEGDAVYSYYIRKHLIFTGQTKPNQLHHLATR---YVSAKAQASLIQKMLTA 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ R G+N N+ TK + A Y ++ E L GYL +T+ RLE ++
Sbjct: 65 QLLTEKEEDIYRRGRNT---NSHTKAKNADVVTYRMSTGFEALMGYLDMTDQKERLETLI 121
Query: 230 S 230
S
Sbjct: 122 S 122
>gi|339496879|ref|ZP_08657855.1| ribonuclease III family protein [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 135
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N SLAYIGD IYEL RRH L L+ + E R V + AL ++++ + L+
Sbjct: 9 MNGLSLAYIGDAIYELEVRRHLLSLGLTKVNELQKRSKHYVSAKAHAALFEQMMVSNILT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
+E D + G+N A + TK + Y ++ +E L GYLY++ + R+ ++M+
Sbjct: 69 DDELDYFKRGRN---AKSHTKAKNTDVITYRISTGVEALFGYLYMSEQHERILELMT 122
>gi|347524904|ref|YP_004831652.1| ribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345283863|gb|AEN77716.1| Ribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 130
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD IYE+Y R+H L ++ + + R V + Q AL+ ++ + L+
Sbjct: 7 MNGIALAYIGDAIYEVYVRKHLLDKGMTKPNKLHKRATHYVSAKAQAALISQMEEQNLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
EE++ R G+N S + + Y ++ E L GYLYL+ +RL+++
Sbjct: 67 DEEKEYFRRGRNAKSYTS--AKNTSVVTYRISTGFEALFGYLYLSGKKDRLDEL 118
>gi|384136751|ref|YP_005519465.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290836|gb|AEJ44946.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 137
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 121 SLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LA++GD ++E+YAR H L P ++ R ++ V LL+ +L D+
Sbjct: 14 ALAFLGDAVWEIYARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPVLTDA---- 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
ERDV+R G+N S++TR R VY A+ E L GYLY T RL+++ +
Sbjct: 70 -ERDVIRRGRNQKSSHTR--RNVDVVVYRLATGFEALLGYLYATGERERLDEIAT 121
>gi|427394293|ref|ZP_18887730.1| hypothetical protein HMPREF9698_01536 [Alloiococcus otitis ATCC
51267]
gi|425730088|gb|EKU92933.1| hypothetical protein HMPREF9698_01536 [Alloiococcus otitis ATCC
51267]
Length = 132
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAY+GD +Y+LY RR+ L + + V + Q L+ + L+
Sbjct: 4 KDVQLLNGLALAYMGDAVYDLYIRRYLLEKGSTKPNRLHQSATHYVSAKAQARLIDQALD 63
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L++EE + + G+N S + + A A YN++S E + GYLYLT RLE+++
Sbjct: 64 QDLLTSEELGIFKRGRNAKSHS--KAKNASQADYNKSSGFEAVMGYLYLTGQEGRLEELI 121
>gi|323339371|ref|ZP_08079656.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|335998616|ref|ZP_08564525.1| ribonuclease III [Lactobacillus ruminis SPM0211]
gi|417972449|ref|ZP_12613350.1| hypothetical protein ANHS_28 [Lactobacillus ruminis ATCC 25644]
gi|323093194|gb|EFZ35781.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|335348015|gb|EGM49524.1| ribonuclease III [Lactobacillus ruminis SPM0211]
gi|346331169|gb|EGX99387.1| hypothetical protein ANHS_28 [Lactobacillus ruminis ATCC 25644]
Length = 130
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD IYE+Y R+H L ++ + + R V + Q AL+ ++ + L+
Sbjct: 7 MNGIALAYIGDAIYEVYVRKHLLDKGMTKPNKLHKRATHYVSAKAQAALISQMEEQNLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
EE++ R G+N S + + Y ++ E L GYLYL+ +RL+++
Sbjct: 67 DEEKEYFRRGRNAKSYTS--AKNTSVVTYRISTGFEALFGYLYLSGQKDRLDEL 118
>gi|422825525|ref|ZP_16873704.1| ribonuclease III [Streptococcus sanguinis SK678]
gi|324996027|gb|EGC27938.1| ribonuclease III [Streptococcus sanguinis SK678]
Length = 130
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAIYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEDIERLEELI 119
>gi|357237680|ref|ZP_09125021.1| RNase3 domain protein [Streptococcus ictaluri 707-05]
gi|356753870|gb|EHI70973.1| RNase3 domain protein [Streptococcus ictaluri 707-05]
Length = 132
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y Y RRH +F + + ++ V + Q L+Q +L + L
Sbjct: 9 LINGIALAFEGDAVYSCYIRRHLIFKGQTKPSQLHHLATKYVSAKVQATLIQAMLAEGLL 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
S +E D+ + G+N AN+ TK + A Y ++ E L GYL +T RLE ++
Sbjct: 69 SEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEALMGYLDMTGQTERLESLI 122
>gi|450053324|ref|ZP_21841567.1| hypothetical protein SMU68_09414 [Streptococcus mutans NFSM1]
gi|449199106|gb|EMC00189.1| hypothetical protein SMU68_09414 [Streptococcus mutans NFSM1]
Length = 139
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F + + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGFTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N A++ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ADSHTKAKNTDVVTYKMSTGFEAIMGYLHMTEQIERLEELI 122
>gi|417809915|ref|ZP_12456596.1| hypothetical protein LSGJ_00755 [Lactobacillus salivarius GJ-24]
gi|335350839|gb|EGM52335.1| hypothetical protein LSGJ_00755 [Lactobacillus salivarius GJ-24]
Length = 135
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y RRH L L+ + +++ V + Q L++K+ + L+
Sbjct: 12 NGIALAYMGDAIYEIYIRRHLLAKGLTKPTKLHHKATHYVSAKAQAFLIEKMQEQNVLND 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDV 228
EE + + G+N S + + Y ++ E L GYLYL++ RLE++
Sbjct: 72 EELEFFKRGRNAKSHT--SAKNTSVVTYRISTGFEALFGYLYLSDQIERLEEL 122
>gi|389573532|ref|ZP_10163606.1| yazC [Bacillus sp. M 2-6]
gi|388426847|gb|EIL84658.1| yazC [Bacillus sp. M 2-6]
Length = 143
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD I+E+Y R H L + E + R +V ++Q A+L +L + +
Sbjct: 13 LNGLALAYMGDAIFEVYVRHHLLQTGATKPNELHKRASKIVSAKSQAAILFELQQKGFFT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E V++ G+N S + Y +++ E L GYL++ + RLE+++S+
Sbjct: 73 EAEEAVLKRGRNAKSGT--VPKNTDVQTYRYSTAFEALMGYLFIEKQDERLEELISQ 127
>gi|16077163|ref|NP_387976.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307907|ref|ZP_03589754.1| hypothetical protein Bsubs1_00495 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312228|ref|ZP_03594033.1| hypothetical protein BsubsN3_00490 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317162|ref|ZP_03598456.1| hypothetical protein BsubsJ_00495 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321425|ref|ZP_03602719.1| hypothetical protein BsubsS_00495 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774338|ref|YP_006628282.1| ribonuclease for 23S RNA maturation [Bacillus subtilis QB928]
gi|428277510|ref|YP_005559245.1| hypothetical protein BSNT_00194 [Bacillus subtilis subsp. natto
BEST195]
gi|430755603|ref|YP_007211164.1| hypothetical protein A7A1_0111 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449092808|ref|YP_007425299.1| ribonuclease for 23S RNA maturation [Bacillus subtilis XF-1]
gi|452916602|ref|ZP_21965224.1| hypothetical protein BS732_4431 [Bacillus subtilis MB73/2]
gi|81341823|sp|O31418.1|MRNC_BACSU RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|2632362|emb|CAB11871.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
subtilis str. 168]
gi|291482467|dbj|BAI83542.1| hypothetical protein BSNT_00194 [Bacillus subtilis subsp. natto
BEST195]
gi|402479524|gb|AFQ56033.1| Ribonuclease for 23S RNA maturation [Bacillus subtilis QB928]
gi|407955786|dbj|BAM49026.1| ribonuclease [Bacillus subtilis BEST7613]
gi|407963057|dbj|BAM56296.1| ribonuclease [Bacillus subtilis BEST7003]
gi|430020123|gb|AGA20729.1| Hypothetical protein YazC [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449026723|gb|AGE61962.1| ribonuclease for 23S RNA maturation [Bacillus subtilis XF-1]
gi|452114511|gb|EME04911.1| hypothetical protein BS732_4431 [Bacillus subtilis MB73/2]
Length = 143
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>gi|90962220|ref|YP_536136.1| hypothetical protein LSL_1246 [Lactobacillus salivarius UCC118]
gi|227891226|ref|ZP_04009031.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|417788561|ref|ZP_12436244.1| ribonuclease III family protein [Lactobacillus salivarius NIAS840]
gi|418961728|ref|ZP_13513613.1| hypothetical protein SMXD51_07307 [Lactobacillus salivarius SMXD51]
gi|90821414|gb|ABE00053.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
gi|227867100|gb|EEJ74521.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|334308738|gb|EGL99724.1| ribonuclease III family protein [Lactobacillus salivarius NIAS840]
gi|380343823|gb|EIA32171.1| hypothetical protein SMXD51_07307 [Lactobacillus salivarius SMXD51]
Length = 135
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y RRH L L+ + +++ V + Q L++K+ + L+
Sbjct: 12 NGIALAYMGDAIYEIYIRRHLLAKGLTKPTKLHHKATHYVSAKAQAFLIEKMQEQNVLND 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDV 228
EE + + G+N S + + Y ++ E L GYLYL++ RLE++
Sbjct: 72 EELEFFKRGRNAKSHT--SAKNTSVVTYRISTGFEALFGYLYLSDQIERLEEL 122
>gi|420261772|ref|ZP_14764416.1| ribonuclease III [Enterococcus sp. C1]
gi|394771706|gb|EJF51467.1| ribonuclease III [Enterococcus sp. C1]
Length = 140
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R + + + + ++ V + Q L+QK+L++ L+
Sbjct: 7 LNGLALAYVGDAVYEVYIRDYLVAQGQTRPNQLHHMATHYVSAKAQAVLIQKMLDEEILT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE D R G+N S + + A Y A+ E+L GYL+LT RL++++
Sbjct: 67 EEEHDFYRRGRN--SKSHTGAKNADVTTYRIATGFESLIGYLHLTQQKERLDELVD 120
>gi|422822446|ref|ZP_16870639.1| ribonuclease III [Streptococcus sanguinis SK353]
gi|324989716|gb|EGC21659.1| ribonuclease III [Streptococcus sanguinis SK353]
Length = 130
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLIYLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTEAIERLEELI 119
>gi|386756676|ref|YP_006229892.1| ribonuclease for 23S RNA maturation [Bacillus sp. JS]
gi|384929958|gb|AFI26636.1| ribonuclease for 23S RNA maturation [Bacillus sp. JS]
Length = 143
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYLFL---EKREERLSQL 124
>gi|147676632|ref|YP_001210847.1| hypothetical protein PTH_0296 [Pelotomaculum thermopropionicum SI]
gi|146272729|dbj|BAF58478.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
thermopropionicum SI]
Length = 138
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQK 167
KV KP A LAY+GD +YEL R + L + ++ + V Q LL+
Sbjct: 9 KVEKPGD-LPALVLAYVGDAVYELAVRSSLVNAGLVRVNRLHDEAVKYVNAGAQARLLRL 67
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
L + L+ EE +VVR G+N S + R AG Y +++LE L GYLYL + +RL
Sbjct: 68 L--EGILTEEEAEVVRRGRNARSPHA--PRGAGVVEYRHSTALECLIGYLYLKGDTDRLA 123
Query: 227 DVMSKLGFTNGSS 239
++MS L G S
Sbjct: 124 EIMSLLLKAAGES 136
>gi|449906496|ref|ZP_21793342.1| hypothetical protein SMU108_09262 [Streptococcus mutans M230]
gi|449910747|ref|ZP_21794859.1| hypothetical protein SMU109_07366 [Streptococcus mutans OMZ175]
gi|449974591|ref|ZP_21815372.1| hypothetical protein SMU44_03207 [Streptococcus mutans 11VS1]
gi|450012536|ref|ZP_21829675.1| hypothetical protein SMU58_08173 [Streptococcus mutans A19]
gi|450024365|ref|ZP_21831194.1| hypothetical protein SMU60_05982 [Streptococcus mutans U138]
gi|450035975|ref|ZP_21835279.1| hypothetical protein SMU62_06791 [Streptococcus mutans M21]
gi|450134480|ref|ZP_21871060.1| hypothetical protein SMU88_09045 [Streptococcus mutans NLML8]
gi|450146263|ref|ZP_21874878.1| hypothetical protein SMU9_08797 [Streptococcus mutans 1ID3]
gi|450182215|ref|ZP_21888224.1| hypothetical protein SMU99_07940 [Streptococcus mutans 24]
gi|449148460|gb|EMB52328.1| hypothetical protein SMU9_08797 [Streptococcus mutans 1ID3]
gi|449149368|gb|EMB53172.1| hypothetical protein SMU88_09045 [Streptococcus mutans NLML8]
gi|449178196|gb|EMB80470.1| hypothetical protein SMU44_03207 [Streptococcus mutans 11VS1]
gi|449188300|gb|EMB90021.1| hypothetical protein SMU58_08173 [Streptococcus mutans A19]
gi|449192070|gb|EMB93508.1| hypothetical protein SMU60_05982 [Streptococcus mutans U138]
gi|449194741|gb|EMB96087.1| hypothetical protein SMU62_06791 [Streptococcus mutans M21]
gi|449245036|gb|EMC43387.1| hypothetical protein SMU99_07940 [Streptococcus mutans 24]
gi|449257294|gb|EMC54990.1| hypothetical protein SMU108_09262 [Streptococcus mutans M230]
gi|449259170|gb|EMC56712.1| hypothetical protein SMU109_07366 [Streptococcus mutans OMZ175]
Length = 139
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F + + + + V + Q L+ K+L
Sbjct: 8 NLINGIALAFEGDAIYSTYIRKHLIFQGFTKPNQLHRKTTRYVSAKAQAMLITKMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
LS +E D+ R G+N A++ TK + Y ++ E + GYL++T RLE+++
Sbjct: 68 LSEKEEDIYRRGRN---ADSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIERLEELI 122
>gi|422758221|ref|ZP_16811983.1| hypothetical protein SDD27957_01380 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322411056|gb|EFY01964.1| hypothetical protein SDD27957_01380 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 133
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
++ N +LA+ GD +Y Y RRH +F P + R V + Q L+Q +L
Sbjct: 8 NLINGIALAFEGDAVYSYYIRRHLIFQGKTKPSQLHHLATR---YVSAKAQANLIQAMLE 64
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
L+ +E D+ R G+N N+ TK + A Y R++ E + GYL +T+ RLE++
Sbjct: 65 AQLLTEKEEDIYRRGRNT---NSHTKAKNADVVTYRRSTGFEAVMGYLDMTDQKARLEEL 121
Query: 229 MS 230
++
Sbjct: 122 IT 123
>gi|402299374|ref|ZP_10818985.1| RNAse III [Bacillus alcalophilus ATCC 27647]
gi|401725412|gb|EJS98697.1| RNAse III [Bacillus alcalophilus ATCC 27647]
Length = 141
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD + E+Y R H + + + + + V + Q A++ ++++D++ S
Sbjct: 13 LNPLALAYMGDAVLEMYIRYHLIAQGKVRPHQLHKEATSFVSAKAQAAVVHQMIDDNFFS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
E VVR G+N S + + Y A++ E + GYLYL +RL++V++K+
Sbjct: 73 EAELAVVRRGRNARSGS--VPKNTDVQTYRYATAFEAILGYLYLQEETSRLDEVVAKM 128
>gi|220930681|ref|YP_002507590.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|220001009|gb|ACL77610.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 139
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 100 YERWLPNPPKVG--KPRSVFNAA--SLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMA 154
YE + N K KP V N LAYIGD +YE+Y R + S + + +
Sbjct: 2 YEEIIQNMRKDFDIKPMEVMNLQPLVLAYIGDAVYEMYIRTMLVVKNKSNVNMLHKMSVK 61
Query: 155 VVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLA 214
V+ ++Q +L + +ND L+ +E D+VR G+N SA + A Y ++ E L
Sbjct: 62 YVKAKSQADILHR-VNDR-LTEDEHDIVRRGRNAKSAT--VPKHADVTDYRYSTGFEALI 117
Query: 215 GYLYLTNA-NRLEDVM 229
GYLYLTN+ RL +++
Sbjct: 118 GYLYLTNSYERLMEIL 133
>gi|422880794|ref|ZP_16927250.1| ribonuclease III [Streptococcus sanguinis SK355]
gi|332365782|gb|EGJ43539.1| ribonuclease III [Streptococcus sanguinis SK355]
Length = 130
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|398303907|ref|ZP_10507493.1| hypothetical protein BvalD_00085 [Bacillus vallismortis DV1-F-3]
Length = 143
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L L+ + + + +V ++Q +L L + S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGLTKPNDLHKKSSRIVSAKSQAEILFFLQDQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>gi|399515870|ref|ZP_10757505.1| COG1939: Ribonuclease III family protein [Leuconostoc
pseudomesenteroides 4882]
gi|398649369|emb|CCJ65532.1| COG1939: Ribonuclease III family protein [Leuconostoc
pseudomesenteroides 4882]
Length = 135
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD IYEL R+H L L+ + + R V + A+ Q++ ++ LS
Sbjct: 9 MNGLALAYIGDAIYELEVRQHLLAMGLTKVNDLQKRSKHYVSAKAHAAIFQRMSDEQILS 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+E + G+N A + TK + Y ++ +E L GYLYL+N RL+ +M+
Sbjct: 69 EDELVYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGYLYLSNRQERLQTLMA 122
>gi|194017475|ref|ZP_03056086.1| YazC [Bacillus pumilus ATCC 7061]
gi|194010747|gb|EDW20318.1| YazC [Bacillus pumilus ATCC 7061]
Length = 143
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD I+E+Y R H L + E + R +V ++Q A+L L + +
Sbjct: 13 LNGLALAYMGDAIFEVYVRHHLLQTGATKPNELHKRASKIVSAKSQAAILFTLQQQGFFT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E V++ G+N S + Y +++ E L GYL++ + RLE+++S+
Sbjct: 73 EAEEAVLKRGRNAKSGT--VPKNTDVQTYRYSTAFEALMGYLFIEKQDERLEELISQ 127
>gi|422847553|ref|ZP_16894236.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|422872290|ref|ZP_16918783.1| ribonuclease III [Streptococcus sanguinis SK1087]
gi|325686897|gb|EGD28922.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|328944847|gb|EGG39007.1| ribonuclease III [Streptococcus sanguinis SK1087]
Length = 130
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|157690878|ref|YP_001485340.1| ribonuclease III [Bacillus pumilus SAFR-032]
gi|157679636|gb|ABV60780.1| possible ribonuclease III [Bacillus pumilus SAFR-032]
Length = 143
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD I+E+Y R H L + E + R +V ++Q A+L L + +
Sbjct: 13 LNGLALAYMGDAIFEVYVRHHLLQTGATKPNELHKRASKIVSAKSQAAILFTLQQQGFFT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E V++ G+N S + Y +++ E L GYL++ + RLE+++S+
Sbjct: 73 EAEEAVLKRGRNAKSGT--VPKNTDVQTYRYSTAFEALMGYLFIDKQDERLEELISQ 127
>gi|89100737|ref|ZP_01173592.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911]
gi|89084554|gb|EAR63700.1| hypothetical protein B14911_00239 [Bacillus sp. NRRL B-14911]
Length = 141
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEY-NNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E Y R H + + + A V + Q ++ K L +L
Sbjct: 13 LNSLALAYMGDAVFEQYVRNHLIQKGTVRPNFLHKEATAYVSAKAQSYVIHKFLEADFLD 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE VVR G+N S + Y +++ E L GYLYL A RLE+++S
Sbjct: 73 EEEAAVVRRGRNAKSGT--IPKNTDVQTYRYSTAFEALIGYLYLAGAEERLEEIIS 126
>gi|315612690|ref|ZP_07887602.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
gi|315315277|gb|EFU63317.1| ribonuclease III [Streptococcus sanguinis ATCC 49296]
Length = 128
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQAHLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETIIS 120
>gi|241888848|ref|ZP_04776154.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
gi|241864524|gb|EER68900.1| cysteinyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
Length = 143
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 101 ERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCE 159
E+ NP ++ A +LAYIGD IY++ +R + + L I + + V +V
Sbjct: 11 EKNFANPNQM-------QALTLAYIGDSIYDIMSREYVMKNHLGKINDLHKTVSTIVSAR 63
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q + ++ +LN+S L+ +E + KN N + A Y A+ LE + GYLYL
Sbjct: 64 AQASFMENILNNSILTEQEEKIYNRAKN--QKNNSKAKNASIMEYKLATGLEAVFGYLYL 121
Query: 220 -TNANRLEDVMS 230
N RLE++ +
Sbjct: 122 EKNFERLEEMFN 133
>gi|401682566|ref|ZP_10814457.1| ribonuclease III domain protein [Streptococcus sp. AS14]
gi|422853455|ref|ZP_16900119.1| ribonuclease III [Streptococcus sanguinis SK160]
gi|325697467|gb|EGD39353.1| ribonuclease III [Streptococcus sanguinis SK160]
gi|400184217|gb|EJO18462.1| ribonuclease III domain protein [Streptococcus sp. AS14]
Length = 130
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTDKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|339480583|ref|ZP_08656242.1| ribonuclease III [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 135
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD IYEL R+H L L+ + + R V + A+ Q++ +D L
Sbjct: 10 NGLALAYIGDAIYELEVRQHLLAMGLTKVNDLQKRSKHYVSAKAHAAIFQRMSDDQILFE 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+E + G+N S +T+ K Y ++ +E L GYLYL+N RL+ +M+
Sbjct: 70 DELIYFKRGRNAKS-HTKAK-NTDVVTYRISTGIEALFGYLYLSNRQKRLQTLMA 122
>gi|418965886|ref|ZP_13517644.1| RNase3 domain protein [Streptococcus constellatus subsp.
constellatus SK53]
gi|383341520|gb|EID19779.1| RNase3 domain protein [Streptococcus constellatus subsp.
constellatus SK53]
Length = 134
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSTYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E ++ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEEIYKRGRN---ANSHTKAKNADIITYRMSTGFEAIMGYLHMTGAIERLEELI 119
>gi|358062854|ref|ZP_09149490.1| hypothetical protein HMPREF9473_01552 [Clostridium hathewayi
WAL-18680]
gi|356698943|gb|EHI60467.1| hypothetical protein HMPREF9473_01552 [Clostridium hathewayi
WAL-18680]
Length = 154
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 121 SLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YEL R + + + + + R +V+ ETQ L++ L D L+AEE
Sbjct: 37 ALAYIGDAVYELIIRTKVINHGSMQVNKMHKRSAGLVKAETQANLIKALEED--LTAEEL 94
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
V + G+N S T + A Y A+ E L GYLY+T
Sbjct: 95 AVFKRGRNAKSVT--TAKHATVIDYRMATGFEALVGYLYIT 133
>gi|346722812|ref|YP_001180155.2| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106783|gb|ABP66964.2| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 130
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YELY R + P L+ Y + V+ +Q ++KL L E+
Sbjct: 8 AYIGDAVYELYVRNKVISENPDLTPYHYYLKTTKYVKASSQAIAIKKLYER--LDENEKI 65
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
+V+ G+NV S + A + Y A++LETL GYLYL N RLE ++S++
Sbjct: 66 IVKRGRNVKSKTV--PKNAKLSDYKYATALETLIGYLYLENNTERLEYILSQV 116
>gi|422861483|ref|ZP_16908123.1| ribonuclease III [Streptococcus sanguinis SK330]
gi|327468351|gb|EGF13836.1| ribonuclease III [Streptococcus sanguinis SK330]
Length = 130
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTDKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELIG 120
>gi|254525420|ref|ZP_05137472.1| ribonuclease III family protein [Prochlorococcus marinus str. MIT
9202]
gi|221536844|gb|EEE39297.1| ribonuclease III family protein [Prochlorococcus marinus str. MIT
9202]
Length = 132
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
W+ N G P + LA++GD ++EL+ R + PL ++ + V+ V+ ++Q
Sbjct: 4 WIQNLVPYGSPEDI-GVIQLAWLGDSVWELHQRLRHVHYPLKSKDLHLSVVNEVKAKSQS 62
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L ++ + L++ E D++R +N R + + ++Y+RA+ ETL G+L+L +
Sbjct: 63 KSLSQI--EHLLNSNEIDLIRRARN---KTKRYPKSSNPSIYSRATGFETLIGWLFLKDP 117
Query: 223 NRLEDVMSKLGF 234
RL + L
Sbjct: 118 QRLSTLFEYLDL 129
>gi|374307675|ref|YP_005054106.1| ribonuclease III [Filifactor alocis ATCC 35896]
gi|291166311|gb|EFE28357.1| ribonuclease III [Filifactor alocis ATCC 35896]
Length = 137
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
P N LA++GDC+YE R + + FP + I + + ++ + +Q ++QKL
Sbjct: 12 PLHSVNPIVLAFMGDCVYEFAIRDYVIRKFPTMKIHAVHRKAVSFAKASSQANVVQKLHE 71
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L+ EE V+ G+N ++ + A Y A+ ETL GYL+ N
Sbjct: 72 MDFLTEEEWSWVKKGRN---QHSMIPKNASPMEYRYATGFETLLGYLHFVN 119
>gi|312862579|ref|ZP_07722820.1| RNase3 domain protein [Streptococcus vestibularis F0396]
gi|311101839|gb|EFQ60041.1| RNase3 domain protein [Streptococcus vestibularis F0396]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+++
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMIDREL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A + TK + Y ++ E + GYL++T + +RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AKSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDVDRLEELVT 123
>gi|376263098|ref|YP_005149818.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373947092|gb|AEY68013.1| hypothetical protein Clo1100_3902 [Clostridium sp. BNL1100]
Length = 139
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 112 KPRSVFNAA--SLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKL 168
KP V N LAYIGD +YE+Y R + S + + + V+ ++Q ++ +
Sbjct: 16 KPMDVMNLQPLVLAYIGDAVYEVYIRTMLVVNSKSNVNMLHKMSVKYVKAKSQADIVHR- 74
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+ND L+A+E+D+VR G+N SA + A Y ++ E L GYLYLTN
Sbjct: 75 VNDR-LTADEQDIVRRGRNAKSAT--VPKHADVTDYRYSTGFEALIGYLYLTN 124
>gi|331266878|ref|YP_004326508.1| RIBOc superfamily protein [Streptococcus oralis Uo5]
gi|419781281|ref|ZP_14307113.1| ribonuclease III domain protein [Streptococcus oralis SK100]
gi|326683550|emb|CBZ01168.1| RIBOc superfamily protein [Streptococcus oralis Uo5]
gi|383184673|gb|EIC77187.1| ribonuclease III domain protein [Streptococcus oralis SK100]
Length = 128
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETIIS 120
>gi|311070742|ref|YP_003975665.1| ribonuclease for 23S RNA maturation [Bacillus atrophaeus 1942]
gi|419823193|ref|ZP_14346753.1| ribonuclease for 23S RNA maturation [Bacillus atrophaeus C89]
gi|310871259|gb|ADP34734.1| ribonuclease for 23S RNA maturation [Bacillus atrophaeus 1942]
gi|388472724|gb|EIM09487.1| ribonuclease for 23S RNA maturation [Bacillus atrophaeus C89]
Length = 143
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N ++ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQANILFHLQNKTFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE V+R G+N S T + Y +++ E L G+L+L
Sbjct: 74 EEEAVLRRGRNAKSGT--TPKNTDVQTYRYSTAFEALIGHLFL 114
>gi|55820187|ref|YP_138629.1| hypothetical protein stu0085 [Streptococcus thermophilus LMG 18311]
gi|55822075|ref|YP_140516.1| hypothetical protein str0085 [Streptococcus thermophilus CNRZ1066]
gi|386085794|ref|YP_006001668.1| Ribonuclease III family protein [Streptococcus thermophilus ND03]
gi|386343693|ref|YP_006039857.1| hypothetical protein STH8232_0126 [Streptococcus thermophilus JIM
8232]
gi|387908886|ref|YP_006339192.1| hypothetical protein Y1U_C0078 [Streptococcus thermophilus
MN-ZLW-002]
gi|418028430|ref|ZP_12666996.1| hypothetical protein STHE1630_01692 [Streptococcus thermophilus
CNCM I-1630]
gi|445370708|ref|ZP_21425910.1| hypothetical protein IQ5_00469 [Streptococcus thermophilus MTCC
5460]
gi|445385632|ref|ZP_21427619.1| hypothetical protein IQ7_00474 [Streptococcus thermophilus MTCC
5461]
gi|55736172|gb|AAV59814.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55738060|gb|AAV61701.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gi|312277507|gb|ADQ62164.1| Ribonuclease III family protein [Streptococcus thermophilus ND03]
gi|339277154|emb|CCC18902.1| hypothetical protein STH8232_0126 [Streptococcus thermophilus JIM
8232]
gi|354687260|gb|EHE87360.1| hypothetical protein STHE1630_01692 [Streptococcus thermophilus
CNCM I-1630]
gi|387573821|gb|AFJ82527.1| hypothetical protein Y1U_C0078 [Streptococcus thermophilus
MN-ZLW-002]
gi|444751596|gb|ELW76318.1| hypothetical protein IQ7_00474 [Streptococcus thermophilus MTCC
5461]
gi|444751624|gb|ELW76344.1| hypothetical protein IQ5_00469 [Streptococcus thermophilus MTCC
5460]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-VRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATCYVSAKAQASLIEKMLEREL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A + TK + Y ++ E + GYL++T + +RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AKSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDIDRLEELVA 123
>gi|430748586|ref|YP_007211494.1| hypothetical protein Theco_0251 [Thermobacillus composti KWC4]
gi|430732551|gb|AGA56496.1| hypothetical protein Theco_0251 [Thermobacillus composti KWC4]
Length = 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 107 PPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALL 165
PP KP ++ N LAY+GD ++EL R+H P +E + + V + Q ALL
Sbjct: 2 PP--AKPLNLMNPVVLAYVGDAVFELLVRQHLAARPNHKPDELHRGAVRFVSAKAQRALL 59
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLY 218
+KL +L+ EE ++VR G+N S GA + Y A++LE L G+LY
Sbjct: 60 EKL--QPHLTEEEAEIVRRGRNAKSGAPPK----GADIRDYRHATALECLFGWLY 108
>gi|218290035|ref|ZP_03494202.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
gi|218239869|gb|EED07057.1| ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
Length = 137
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 121 SLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LA++GD ++E+YAR H L P ++ R ++ V LL+ +L ++
Sbjct: 14 ALAFLGDAVWEIYARNHCLNLGILRPRDLQRQATRYVSAVAQAEALRLLEPMLTEA---- 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
ERDV+R G+N S++TR R VY A+ E L GYLY T
Sbjct: 70 -ERDVIRRGRNQKSSHTR--RNVDVVVYRLATGFEALVGYLYATG 111
>gi|262281990|ref|ZP_06059759.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
gi|262262444|gb|EEY81141.1| cysteinyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
Length = 134
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQADLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT 220
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMT 109
>gi|322517684|ref|ZP_08070547.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
gi|322123672|gb|EFX95264.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
Length = 133
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+++
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMIDREL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A + TK + Y ++ E + GYL++T + +RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AKSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDVDRLEELVT 123
>gi|329769071|ref|ZP_08260493.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325]
gi|328839562|gb|EGF89138.1| hypothetical protein HMPREF0433_00257 [Gemella sanguinis M325]
Length = 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 101 ERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCE 159
E+ NP ++ A +LAYIGD IY++ +R + + L I E + +V +V
Sbjct: 11 EKNFSNPNQM-------QALTLAYIGDSIYDIMSREYVMKNHLGKINELHKKVSTIVSAR 63
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q + ++ +L ++ L+ +E + KN N + A Y A+ LE + GYLYL
Sbjct: 64 AQASFMENMLENNILTEDEEKIYNRAKN--QKNNSKAKNASIMEYKLATGLEAVFGYLYL 121
Query: 220 -TNANRLEDVMS 230
N RLE++ +
Sbjct: 122 EKNFERLEEMFN 133
>gi|418975234|ref|ZP_13523143.1| RNase3 domain protein [Streptococcus oralis SK1074]
gi|419778123|ref|ZP_14304025.1| ribonuclease III domain protein [Streptococcus oralis SK10]
gi|383187876|gb|EIC80320.1| ribonuclease III domain protein [Streptococcus oralis SK10]
gi|383348605|gb|EID26564.1| RNase3 domain protein [Streptococcus oralis SK1074]
Length = 128
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETIIS 120
>gi|157151297|ref|YP_001449669.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157076091|gb|ABV10774.1| cysteinyl-tRNA synthetase [Streptococcus gordonii str. Challis
substr. CH1]
Length = 134
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT 220
L+ +E D+ + G+N AN+ TK + A Y ++ E + GYL++T
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMT 109
>gi|227432702|ref|ZP_03914674.1| ribonuclease III [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227351540|gb|EEJ41794.1| ribonuclease III [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 135
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N SLAYIGD IYEL RRH L L+ + E R V + L ++++ + L+
Sbjct: 9 MNGLSLAYIGDAIYELEVRRHLLSLGLTKVNELQKRSKHYVSAKAHATLFEQMMVSNILT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
+E D + G+N A + TK + Y ++ +E L GYLY++ + R+ ++M+
Sbjct: 69 DDELDYFKRGRN---AKSHTKAKNTDVITYRISTGVEALFGYLYMSEQHERILELMT 122
>gi|116627044|ref|YP_819663.1| hypothetical protein STER_0118 [Streptococcus thermophilus LMD-9]
gi|116100321|gb|ABJ65467.1| Ribonuclease III family protein [Streptococcus thermophilus LMD-9]
Length = 133
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q +L++K+L
Sbjct: 8 NLINGIALAFEGDAVYSLYIRRHLIFQGQTKPNQLHRLATRYVSAKAQASLIEKMLEREL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ + G+N A + TK + Y ++ E + GYL++T + +RLE++++
Sbjct: 68 LTEKELDIYKRGRN---AKSHTKAKNTDVITYKMSTGFEAVMGYLHMTEDIDRLEELVA 123
>gi|422879668|ref|ZP_16926133.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|422929514|ref|ZP_16962455.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|422932483|ref|ZP_16965414.1| ribonuclease III [Streptococcus sanguinis SK340]
gi|332365577|gb|EGJ43337.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|339614754|gb|EGQ19444.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|339618234|gb|EGQ22832.1| ribonuclease III [Streptococcus sanguinis SK340]
Length = 130
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLIFQGLTKPNKLHREATKYVSAKAQANLISLMLEEGTL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 66 TEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|229917378|ref|YP_002886024.1| ribonuclease III [Exiguobacterium sp. AT1b]
gi|229468807|gb|ACQ70579.1| ribonuclease III [Exiguobacterium sp. AT1b]
Length = 134
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE+ RR L L+ + + + V Q +++ L L+
Sbjct: 7 MNALALAYMGDVVYEMAVRRRLLEKGLTRPNDLHRGAVRYVNARAQASVVTFWLETDVLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE+ VVR GKN S + +R Y +++ E L GY+YLT +RLE+++ +
Sbjct: 67 EEEQAVVRRGKNAKSGS--VPKRVDVHTYRYSTAFEALIGYIYLTERRDRLEELIKQ 121
>gi|452994187|emb|CCQ94246.1| Mini-ribonuclease 3 [Clostridium ultunense Esp]
Length = 143
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 111 GKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
G+ ++ + LAYIGD +YEL R + L + ++ + V+ ++Q ++ L N
Sbjct: 18 GEDINMLSPLQLAYIGDAVYELCVRTYLLNKGIPVKILHQETTQYVKAKSQSNIIHALKN 77
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ EE+ +VR G+N S + + A Y A+ E+L GYLYLT NR+ ++
Sbjct: 78 --VLTEEEKSLVRRGRNAKSKS--IPKNAELIDYKYATGFESLIGYLYLTGRDNRMMELF 133
Query: 230 SKL 232
K+
Sbjct: 134 DKI 136
>gi|28212191|ref|NP_783135.1| hypothetical protein CTC02621 [Clostridium tetani E88]
gi|75541604|sp|Q890M5.1|MRNC_CLOTE RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|28204635|gb|AAO37072.1| conserved protein [Clostridium tetani E88]
Length = 151
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 122 LAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YE++ R + + + + + + + V+ + Q ++++ YL+ EE
Sbjct: 23 LAYIGDAVYEIFIRTYIISKNKDTCVNKLHKKTIQFVKADAQSYFIREI--QKYLNEEEI 80
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
V + G+N S NT K A Y A+ ET+ GYLYL N + RLE++M
Sbjct: 81 KVFKRGRNTKS-NTSAKN-ASIQDYRMATGFETVIGYLYLLNEDERLEEIM 129
>gi|332800101|ref|YP_004461600.1| ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|438003405|ref|YP_007273148.1| COG1939: Ribonuclease III family protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332697836|gb|AEE92293.1| ribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|432180199|emb|CCP27172.1| COG1939: Ribonuclease III family protein [Tepidanaerobacter
acetatoxydans Re1]
Length = 146
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+A +LA++GD +++L+ R + + + + + V+ Q A+L+ L + L++
Sbjct: 28 LSALALAFVGDSVFDLFIRTMLVGSGKKVRDLHKEAVGYVKASAQAAILKAL--EPKLTS 85
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
EERD+VR +N NT K A Y+ +++ E L GYLYLT NR
Sbjct: 86 EERDIVRNARN-AKVNTIPK-HADIMEYHYSTAFEALLGYLYLTGQNR 131
>gi|288904446|ref|YP_003429667.1| hypothetical protein GALLO_0227 [Streptococcus gallolyticus UCN34]
gi|306830479|ref|ZP_07463649.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977442|ref|YP_004287158.1| hypothetical protein SGGBAA2069_c02420 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|374337266|ref|YP_005093967.1| ribonuclease III family protein [Streptococcus macedonicus ACA-DC
198]
gi|386336956|ref|YP_006033125.1| ribonuclease III family protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288731171|emb|CBI12719.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304427504|gb|EFM30606.1| cysteine--tRNA ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177370|emb|CBZ47414.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279592|dbj|BAK27166.1| ribonuclease III family protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|372283367|emb|CCF01541.1| COG1939: Ribonuclease III family protein [Streptococcus macedonicus
ACA-DC 198]
Length = 134
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y R+H +F L+ + + + V + Q L+ +L
Sbjct: 8 NLINGIALAFEGDAVYSMYIRKHLIFQGLTKPNQLHRKATKYVSAKAQAMLINLMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E D+ + G+N N+ TK + A Y ++ E + GYL++T RLE+++
Sbjct: 68 LTEKEEDIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGQIERLEELI 122
>gi|423069327|ref|ZP_17058114.1| hypothetical protein HMPREF9682_01335 [Streptococcus intermedius
F0395]
gi|355364767|gb|EHG12495.1| hypothetical protein HMPREF9682_01335 [Streptococcus intermedius
F0395]
Length = 134
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y Y RRH +F L+ + + V + Q + +L +
Sbjct: 5 NLINGIALAFEGDAVYSTYIRRHLIFQGLTKPNQLHREATKYVSAKAQANFISLMLEEGI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E ++ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEEIYKRGRN---ANSHTKAKNADIITYRMSTGFEAIMGYLHMTGAIGRLEELI 119
>gi|148239399|ref|YP_001224786.1| ribonuclease III family protein [Synechococcus sp. WH 7803]
gi|147847938|emb|CAK23489.1| Ribonuclease III family protein [Synechococcus sp. WH 7803]
Length = 136
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 122 LAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++EL+ R RH P S + + V++ VR + Q L++L L+ ERD
Sbjct: 23 LAWLGDAVWELHQRLRHCRRPGRSAD-LHRAVVSEVRADAQALALERL--QPLLTDLERD 79
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGS 238
+VR G+N R A Y +A+ ET+ G+L+L + RL ++ +L T S
Sbjct: 80 LVRRGRNRAGKGPRG---GDPAAYGKATGFETMVGWLFLHSPARLAQLLDRLEETESS 134
>gi|251781693|ref|YP_002995995.1| hypothetical protein SDEG_0264 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386316203|ref|YP_006012367.1| hypothetical protein SDE12394_01195 [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|408400951|ref|YP_006858914.1| hypothetical protein GGS_0244 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410493998|ref|YP_006903844.1| hypothetical protein SDSE_0275 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417751701|ref|ZP_12399972.1| RNase3 domain protein [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417927847|ref|ZP_12571235.1| RNase3 domain protein [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|242390322|dbj|BAH80781.1| hypothetical protein SDEG_0264 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323126490|gb|ADX23787.1| hypothetical protein SDE12394_01195 [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|333772512|gb|EGL49354.1| RNase3 domain protein [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|340765721|gb|EGR88247.1| RNase3 domain protein [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407967179|dbj|BAM60417.1| hypothetical protein GGS_0244 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410439158|emb|CCI61786.1| Uncharacterized 16.3 kDa protein in atpI 5'region [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 133
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MTNPVDV----NLINGIALAFEGDAVYSYYIRRHLIFQGKTKPSQLHHLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLY 218
Q L+Q +L L+ +E D+ R G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAQLLTEKEEDIYRRGRNT---NSHTKAKNADVVTYRMSTGFEAVMGYLD 110
Query: 219 LTNAN-RLEDVMS 230
+T+ RLE++++
Sbjct: 111 MTDQKARLEELIT 123
>gi|126696247|ref|YP_001091133.1| hypothetical protein P9301_09091 [Prochlorococcus marinus str. MIT
9301]
gi|126543290|gb|ABO17532.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
marinus str. MIT 9301]
Length = 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQ 161
W+ N G P + LA++GD ++EL+ R RH FP L ++ + V+ V+ ++Q
Sbjct: 4 WIQNLIPYGSPEDI-GVIQLAWLGDSVWELHQRLRHVHFP-LKSKDLHLSVVNEVKAKSQ 61
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L ++ + L+ E D++R +N R + + +Y+RA+ ETL G+L+L +
Sbjct: 62 SKSLSQI--EHLLNTNEIDLIRRARN---KIKRYPKSSDPTIYSRATGFETLIGWLFLKD 116
Query: 222 ANRLEDVMSKL 232
RL + L
Sbjct: 117 PQRLSTIFEYL 127
>gi|350264195|ref|YP_004875502.1| hypothetical protein GYO_0123 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|443635009|ref|ZP_21119180.1| hypothetical protein BSI_42590 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|349597082|gb|AEP84870.1| YazC [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|443345200|gb|ELS59266.1| hypothetical protein BSI_42590 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 143
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L + S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQDQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>gi|123968444|ref|YP_001009302.1| hypothetical protein A9601_09111 [Prochlorococcus marinus str.
AS9601]
gi|123198554|gb|ABM70195.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
marinus str. AS9601]
Length = 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
W+ N G P + LA++GD ++EL+ R + PL ++ + V+ V+ ++Q
Sbjct: 4 WIQNLVPYGSPDDI-GVIQLAWLGDSVWELHQRLKHVHFPLKSKDLHLSVVNEVKAKSQS 62
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L ++ + L++ E D++R +N R + + +Y+RA+ ETL G+L+L +
Sbjct: 63 KSLSQI--EHLLNSNEVDLIRRARN---KTKRYPKSSDPTIYSRATGFETLIGWLFLKDP 117
Query: 223 NRLEDVMSKL 232
RL + L
Sbjct: 118 QRLSKLFEYL 127
>gi|417916457|ref|ZP_12560036.1| RNase3 domain protein [Streptococcus mitis bv. 2 str. SK95]
gi|342829664|gb|EGU64013.1| RNase3 domain protein [Streptococcus mitis bv. 2 str. SK95]
Length = 128
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQACLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTDKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETLIS 120
>gi|154249387|ref|YP_001410212.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153323|gb|ABS60555.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 127
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAY+GD ++ LYA+ + L + + + + R V + Q LL+ + L +E++
Sbjct: 18 SLAYLGDAVFNLYAKLYIL-ADVKVTDLHRRSNKYVSRQGQSKLLKSI--SHLLDEKEKN 74
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
VV+ G N A ++ +Y ++ E L GYLYLTN RL +++ K GF
Sbjct: 75 VVQRGINSKGA----RKHGNDRLYMESTGFEALIGYLYLTNKKRLSEIL-KFGF 123
>gi|195978849|ref|YP_002124093.1| hypothetical protein Sez_1753 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|414564854|ref|YP_006043815.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|195975554|gb|ACG63080.1| hypothetical protein Sez_1753 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|338847919|gb|AEJ26131.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 135
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA++GD +Y Y RRH +F + + ++ V + Q +L+Q +L
Sbjct: 8 NLINGIALAFVGDAVYSYYIRRHLIFQGQTKPNKLHHLATKYVSAKAQASLIQAMLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
L+ +E+D+ + G+N N+ TK + A Y ++ E + GYL +T RLE
Sbjct: 68 LTEKEKDIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLDMTGQTERLE 119
>gi|225867829|ref|YP_002743777.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
gi|225701105|emb|CAW97950.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
Length = 135
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA++GD +Y Y RRH +F + + ++ V + Q +L+Q +L L
Sbjct: 9 LINGIALAFVGDAVYSYYIRRHLIFQGQTKPNKLHHLATKYVSAKAQASLIQAMLEAQLL 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
+ +E+D+ + G+N N+ TK + A Y ++ E + GYL +T RLE
Sbjct: 69 TEKEKDIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLDMTGQTERLE 119
>gi|238009794|gb|ACR35932.1| unknown [Zea mays]
gi|414875842|tpg|DAA52973.1| TPA: hypothetical protein ZEAMMB73_241035 [Zea mays]
gi|414875843|tpg|DAA52974.1| TPA: hypothetical protein ZEAMMB73_241035 [Zea mays]
Length = 127
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 80 DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
DL ++ +YMG+E+W LP P V KPRS+++A SLAY+GDCIYE+ R
Sbjct: 67 DLFARSSEAQGGVKKSTYMGFEKWWLPPAPVVKKPRSLYSAVSLAYLGDCIYEVRVR 123
>gi|311029028|ref|ZP_07707118.1| hypothetical protein Bm3-1_00454 [Bacillus sp. m3-13]
Length = 136
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + V ++Q LL +L++ + +
Sbjct: 11 LNSLALAYMGDAVYEGYIRHHLLKSGKIRPNQLHRAATNYVSAKSQAHLLHQLMDREFFT 70
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
EE+ V+R G+N S + + Y +++ E L GY YL+ + +R+E+++
Sbjct: 71 EEEQGVIRRGRNAKSGS--VPKNTDVQTYRYSTAFEALIGYHYLSEDIDRMEEIV 123
>gi|83591299|ref|YP_431308.1| ribonuclease III [Moorella thermoacetica ATCC 39073]
gi|123523749|sp|Q2RFM4.1|MRNC_MOOTA RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|83574213|gb|ABC20765.1| Ribonuclease III [Moorella thermoacetica ATCC 39073]
Length = 127
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YEL R H + P E+ + + VR Q ++ L + YL+ E+
Sbjct: 11 ALAYVGDAVYELLVRAHLVGRGPAKPEQLHREALKYVRATAQARVVPAL--EEYLTPAEK 68
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
D++R G+N + R A A Y+ +++LE+L GYLYL
Sbjct: 69 DILRRGRNARPGH--LPRTAAPAEYHSSTALESLLGYLYLQG 108
>gi|406669676|ref|ZP_11076942.1| hypothetical protein HMPREF9707_00845 [Facklamia ignava CCUG 37419]
gi|405582797|gb|EKB56787.1| hypothetical protein HMPREF9707_00845 [Facklamia ignava CCUG 37419]
Length = 147
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV----MAVVRCETQDALLQKLL-N 170
+ N A+LAYIGD +YE+ R+H L LS E + N++ + V Q +++ L +
Sbjct: 20 LMNGATLAYIGDAVYEVAVRQHVL---LSGETHPNQLHRLAIRFVEAAGQAQVMKHWLSD 76
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
D+ L+ EE + + G+N + NT+ K A Y +A+ E L G+LYL+N +R+ +M
Sbjct: 77 DTSLTPEEIQIYKRGRNYKT-NTKAK-NASIGDYRQATGFEALMGWLYLSNQHDRMNQLM 134
Query: 230 SK 231
+
Sbjct: 135 QE 136
>gi|123966265|ref|YP_001011346.1| hypothetical protein P9515_10321 [Prochlorococcus marinus str. MIT
9515]
gi|123200631|gb|ABM72239.1| Uncharacterized protein conserved in bacteria [Prochlorococcus
marinus str. MIT 9515]
Length = 130
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
W+ N G P + LA++GD ++EL+ R + PL +E + V+ V+ + Q
Sbjct: 4 WIKNLTPYGSPDEI-GVIQLAWLGDSVWELHQRLRHVHIPLKSKELHLSVVNEVKAQAQS 62
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L + + L++ E ++VR +N R + + VY+RA+ ETL G+L+L +
Sbjct: 63 KSLDDI--EHLLNSFEINLVRRARN---KTKRFPKSSDPVVYSRATGFETLIGWLFLKDP 117
Query: 223 NRLEDVMSKL 232
RL + L
Sbjct: 118 KRLSKIFEYL 127
>gi|304405639|ref|ZP_07387298.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
gi|304345678|gb|EFM11513.1| ribonuclease III [Paenibacillus curdlanolyticus YK9]
Length = 154
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLN 170
KP + N LAY GD ++EL R++ + P + E + V + Q L+KLL
Sbjct: 22 KPARLMNPVVLAYAGDAVFELLVRQYLIAKPSHKMHELHREATKRVSAKAQRISLEKLL- 80
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ EE +VVR G+N S + A A Y +A++LE L GYLY RL +++
Sbjct: 81 -PLLTEEEAEVVRRGRNAKSGA--PPKNADVADYRQATALEALFGYLYYERRGTRLRELL 137
Query: 230 S 230
+
Sbjct: 138 A 138
>gi|417847318|ref|ZP_12493286.1| RNase3 domain protein [Streptococcus mitis SK1073]
gi|339456966|gb|EGP69547.1| RNase3 domain protein [Streptococcus mitis SK1073]
Length = 128
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
S+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 SLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEERV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|293364921|ref|ZP_06611638.1| ribonuclease III [Streptococcus oralis ATCC 35037]
gi|307703174|ref|ZP_07640120.1| RNase3 domain protein [Streptococcus oralis ATCC 35037]
gi|291316371|gb|EFE56807.1| ribonuclease III [Streptococcus oralis ATCC 35037]
gi|307623249|gb|EFO02240.1| RNase3 domain protein [Streptococcus oralis ATCC 35037]
Length = 128
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENLERLETIIS 120
>gi|414158035|ref|ZP_11414329.1| hypothetical protein HMPREF9188_00603 [Streptococcus sp. F0441]
gi|410870580|gb|EKS18537.1| hypothetical protein HMPREF9188_00603 [Streptococcus sp. F0441]
Length = 128
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETLIS 120
>gi|401684100|ref|ZP_10815983.1| ribonuclease III domain protein [Streptococcus sp. BS35b]
gi|400186405|gb|EJO20617.1| ribonuclease III domain protein [Streptococcus sp. BS35b]
Length = 128
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQGRLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENLERLESLIS 120
>gi|374578927|ref|ZP_09652021.1| hypothetical protein DesyoDRAFT_0247 [Desulfosporosinus youngiae
DSM 17734]
gi|374415009|gb|EHQ87444.1| hypothetical protein DesyoDRAFT_0247 [Desulfosporosinus youngiae
DSM 17734]
Length = 133
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L ++E + + ++ VR TQ +L LL + L
Sbjct: 7 MNALTLAYLGDAVYELWVRTHLLELGHEKVKELHKQAVSYVRASTQAQVLHALLPE--LD 64
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKLGF 234
E+ +V G+N + + Y A+ E+L GY L+ +R++ K+
Sbjct: 65 ETEQQIVMRGRNTKGGHPKN---IDVVTYRHATGFESLVGYWQLSGQTDRMKWAFDKV-- 119
Query: 235 TNGSSTQMILEEANSKLT 252
+M+L E +++L+
Sbjct: 120 -----DEMLLHEGSNRLS 132
>gi|149183934|ref|ZP_01862319.1| YazC [Bacillus sp. SG-1]
gi|148848357|gb|EDL62622.1| YazC [Bacillus sp. SG-1]
Length = 143
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE Y R++ L L + V + Q A L++L + LS
Sbjct: 14 MNALALAYMGDAVYETYVRQYLLQSGRLKPNHLHRAATGYVSAKAQAAALKRLSDSDLLS 73
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
EE+ +VR G+N S + Y +++ E L GYL+L + +RLE+++
Sbjct: 74 EEEKAIVRRGRNAKSGT--IPKNTDVQTYRYSTAFEALIGYLFLQSRKDRLEELI 126
>gi|451344084|ref|ZP_21913147.1| hypothetical protein HMPREF9943_01372 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337281|gb|EMD16446.1| hypothetical protein HMPREF9943_01372 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 128
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM-----AVVRCETQDALLQ 166
KP + NA +LAY+GD ++E+Y R + + +I+ N+ + + V + Q ++
Sbjct: 2 KP-ELMNALTLAYLGDAVFEVYVREYLILEK-NIQ--NSHALQKASVSYVSADAQALFIK 57
Query: 167 KLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRL 225
K L +L+ E DV R G+ NT+T+R +N +S E L G LYL N R+
Sbjct: 58 KTLAQGFLTEREIDVYRRGR-----NTKTRRIKNVINHNHSSGFEALIGTLYLENNKTRI 112
Query: 226 EDVMSK 231
+++ K
Sbjct: 113 KEIFEK 118
>gi|347547716|ref|YP_004854044.1| hypothetical protein LIV_0217 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346980787|emb|CBW84697.1| Putative YazC protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 136
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R H L + + + V + Q L+K++ D +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREHLLAAGKTKPNQLHKTATKFVSAKGQAVALKKMIADDFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE V + G+N S + A Y+ ++S E + GYLYL +RL++ M K
Sbjct: 70 EEEAAVAKRGRNAKSYT--VPKNTDPATYSMSTSFEAVLGYLYLAGQLDRLQEWMEK 124
>gi|335356903|ref|ZP_08548773.1| hypothetical protein LaniK3_02733 [Lactobacillus animalis KCTC
3501]
Length = 131
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y R+H L ++ ++R V + Q L++K+ L+
Sbjct: 8 NGIALAYMGDAIYEVYIRKHLLDEGMTKPTRLHHRATHYVSAKAQAMLIKKMEEQELLTP 67
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
EE++ R G+N S + + Y ++ E L GYLYL+ RL+++
Sbjct: 68 EEQEYFRRGRNAKSYTS--AKNTSVVTYRISTGFEALFGYLYLSGQTERLDEL 118
>gi|384173756|ref|YP_005555141.1| YazC [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349592980|gb|AEP89167.1| YazC [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 143
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--IPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>gi|392423875|ref|YP_006464869.1| hypothetical protein Desaci_0470 [Desulfosporosinus acidiphilus
SJ4]
gi|391353838|gb|AFM39537.1| hypothetical protein Desaci_0470 [Desulfosporosinus acidiphilus
SJ4]
Length = 139
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YEL+ R H L +++ + + ++ VR TQ +LQ LL + L
Sbjct: 7 MNPLTLAYLGDAVYELWVRTHLLESGYEKVKDLHKQAISYVRAGTQARVLQALLPE--LD 64
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA--------NRLED 227
E VV G+N A + Y A++ E+L GY LT +R+++
Sbjct: 65 EVEHQVVLRGRN---AKGGYPKNVDVVTYRHATAFESLVGYWQLTGQVQRMQWAFSRVDE 121
Query: 228 VMSKLGFTNGSSTQMILEE 246
+M + G T SS + +LEE
Sbjct: 122 IMGE-GPTEESSMENLLEE 139
>gi|358464224|ref|ZP_09174190.1| RNase3 domain protein [Streptococcus sp. oral taxon 058 str. F0407]
gi|357067252|gb|EHI77378.1| RNase3 domain protein [Streptococcus sp. oral taxon 058 str. F0407]
Length = 128
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLETLIS 120
>gi|306832716|ref|ZP_07465853.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|336063574|ref|YP_004558433.1| ribonuclease III family protein [Streptococcus pasteurianus ATCC
43144]
gi|304425172|gb|EFM28301.1| ribonuclease III [Streptococcus bovis ATCC 700338]
gi|334281774|dbj|BAK29347.1| ribonuclease III family protein [Streptococcus pasteurianus ATCC
43144]
Length = 134
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y R+H +F L+ + + + V + Q L+ +L
Sbjct: 8 NLINGIALAFEGDAVYSMYIRKHLIFQGLTKPNQLHRKATKYVSAKAQAMLINLMLEARL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E D+ + G+N N+ TK + A Y ++ E + GYL++T RLE+++
Sbjct: 68 LTEKEEDIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGQIERLEELI 122
>gi|357636161|ref|ZP_09134036.1| RNase3 domain protein [Streptococcus macacae NCTC 11558]
gi|357584615|gb|EHJ51818.1| RNase3 domain protein [Streptococcus macacae NCTC 11558]
Length = 131
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y LY RR+ +F L+ + +R V + Q L+ KLL L
Sbjct: 6 LLNGMALAFEGDAVYSLYIRRYLIFQGLTKPNHLHRQTTKYVSAKAQAKLIHKLLQAGLL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ EE + + G+N A++ TK + Y ++ E + GYL+L + +RLE++++
Sbjct: 66 TQEEELIYKRGRN---AHSHTKAKNTDIVTYKMSTGFEAVMGYLHLLDRIDRLEELIN 120
>gi|225026001|ref|ZP_03715193.1| hypothetical protein EUBHAL_00239 [Eubacterium hallii DSM 3353]
gi|224956651|gb|EEG37860.1| RNase3 domain protein [Eubacterium hallii DSM 3353]
Length = 142
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 108 PKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQ 166
P K +++ LAYIGDCIYEL+ R + Y+ + ++ V Q A+++
Sbjct: 13 PLTEKELRGYSSLGLAYIGDCIYELFVRTMVVTKGNDKANHYHQKTISYVNAAAQTAMME 72
Query: 167 KLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRL 225
K+ L+ EE+ V R GKN S + + + Y+ A+ E L GYLYL+ RL
Sbjct: 73 KI--KPLLTDEEKAVFRRGKNAKSPS--PAKNQSSHDYHIATGFEALMGYLYLSGQMERL 128
Query: 226 EDVM 229
E+++
Sbjct: 129 EELI 132
>gi|332522846|ref|ZP_08399098.1| RNase3 domain protein [Streptococcus porcinus str. Jelinkova 176]
gi|332314110|gb|EGJ27095.1| RNase3 domain protein [Streptococcus porcinus str. Jelinkova 176]
Length = 136
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LA+ GD +Y Y R+H +F P + R V + Q +L QK+L
Sbjct: 8 LINGIALAFEGDAVYSYYIRKHLIFTGQTKPNQLHHLATR---YVSAKAQASLAQKMLEA 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ R G+N N+ TK + A Y ++ E L GYL +T+ RLE ++
Sbjct: 65 QLLTEKEEDIYRRGRNT---NSHTKAKNADVVTYRMSTGFEALMGYLDMTDQKERLEALI 121
Query: 230 S 230
+
Sbjct: 122 T 122
>gi|222152460|ref|YP_002561635.1| hypothetical protein SUB0271 [Streptococcus uberis 0140J]
gi|222113271|emb|CAR40799.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 131
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LA+ GD +Y Y R+H +F P + R V + Q +L+QK+L
Sbjct: 8 LINGIALAFEGDAVYSYYIRKHLIFSGQTKPSQLHHMATR---YVSAKAQASLIQKMLEA 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ R G+N +++ TK + A Y ++ E + GYL +T+ +RLE ++
Sbjct: 65 QLLTEKEEDIYRRGRN---SHSHTKAKNADVVTYRMSTGFEAVMGYLDMTDQKDRLETLI 121
>gi|15612675|ref|NP_240978.1| hypothetical protein BH0112 [Bacillus halodurans C-125]
gi|10172724|dbj|BAB03831.1| BH0112 [Bacillus halodurans C-125]
Length = 139
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD + ++Y R H L + + V + Q A++ + L + L+
Sbjct: 13 LNALALAYMGDSVLDMYVRFHLLAKGTVRPHRLHGEATRYVSAKAQAAIMHEWLETNKLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
+E + + G+N S + Y A+ LE L GYLYLTN +RL+++MS
Sbjct: 73 EQEESIAKRGRNAKSGT--IPKNTDVNTYRYATGLEALLGYLYLTNQPDRLDELMS 126
>gi|399156081|ref|ZP_10756148.1| ribonuclease III [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 150
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SL+Y+GD YEL+ R+ L + ++ + V+ VRC+TQ L+ ++ +L+ EE++
Sbjct: 21 SLSYLGDAFYELWCRQKILQLHQNRKQVHQSVVQFVRCQTQARLVHLIM--PHLTDEEKN 78
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+ R G+N + + A Y A+ E L G+ YL R E +MS+
Sbjct: 79 IFRQGRN--NKVVSLPKHAFTREYRAATGFECLVGFWYLGKEIKRFEKLMSQ 128
>gi|321313766|ref|YP_004206053.1| ribonuclease for 23S RNA maturation [Bacillus subtilis BSn5]
gi|418034773|ref|ZP_12673242.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|320020040|gb|ADV95026.1| ribonuclease for 23S RNA maturation [Bacillus subtilis BSn5]
gi|351468427|gb|EHA28647.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 143
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--IPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>gi|306829041|ref|ZP_07462232.1| ribonuclease III [Streptococcus mitis ATCC 6249]
gi|322374781|ref|ZP_08049295.1| cysteine--tRNA ligase [Streptococcus sp. C300]
gi|419783361|ref|ZP_14309149.1| ribonuclease III domain protein [Streptococcus oralis SK610]
gi|304428846|gb|EFM31935.1| ribonuclease III [Streptococcus mitis ATCC 6249]
gi|321280281|gb|EFX57320.1| cysteine--tRNA ligase [Streptococcus sp. C300]
gi|383182245|gb|EIC74803.1| ribonuclease III domain protein [Streptococcus oralis SK610]
Length = 128
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTDNMERLETLIS 120
>gi|302390629|ref|YP_003826450.1| ribonuclease III [Thermosediminibacter oceani DSM 16646]
gi|302201257|gb|ADL08827.1| ribonuclease III [Thermosediminibacter oceani DSM 16646]
Length = 136
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
S ++ +LA++GD ++ L+ R + + + ++ + VR Q L+KL + YL
Sbjct: 9 SALSSLALAFVGDAVFNLFIRTMLVGNGKKVRDLHHEAVKYVRASAQAEALKKL--EEYL 66
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
+ EE+DVVR +N NT + A Y+ ++ E L GYLYLT N
Sbjct: 67 TPEEKDVVRKARN-AKVNT-VPKNADIMDYHYSTGFEALLGYLYLTGQN 113
>gi|306825733|ref|ZP_07459072.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|417793464|ref|ZP_12440740.1| RNase3 domain protein [Streptococcus oralis SK255]
gi|304432094|gb|EFM35071.1| ribonuclease III [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|334272874|gb|EGL91228.1| RNase3 domain protein [Streptococcus oralis SK255]
Length = 128
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENMERLETLIS 120
>gi|412993717|emb|CCO14228.1| predicted protein [Bathycoccus prasinos]
Length = 314
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 108 PKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNN----------------- 150
PK+ + R A Y+GD ++EL+AR+H + E N
Sbjct: 80 PKLLQNRDASVALCFTYLGDAVWELFARQHLVLRRCKKSERENPPNRQGGRSGGNSSTSV 139
Query: 151 ------RVMAVVRCET--QDALLQKLLN---DSYLSAEERDVVRWGKNVGSANTRTKRRA 199
R C + L++LL+ ++L+ EE +++WG + G ++ R
Sbjct: 140 KTLRPQRAAQDGWCSAVAMHSHLERLLSLEQGTFLTEEEMAILKWGADYGH---ESRARH 196
Query: 200 GAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
+ AS+LE L YLYL + RL +V+ LG T
Sbjct: 197 SGVEHRDASALEALVAYLYLFDGERLMEVLGALGMT 232
>gi|417936601|ref|ZP_12579910.1| RNase3 domain protein [Streptococcus infantis X]
gi|343400535|gb|EGV13052.1| RNase3 domain protein [Streptococcus infantis X]
Length = 130
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLETLIS 120
>gi|325288491|ref|YP_004264672.1| ribonuclease III [Syntrophobotulus glycolicus DSM 8271]
gi|324963892|gb|ADY54671.1| ribonuclease III [Syntrophobotulus glycolicus DSM 8271]
Length = 142
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD +YEL+ R H L ++ +E+ + + V+ Q +LL+ +L + L
Sbjct: 20 NILTLAYLGDAVYELWVRSHLLTKGIAKVEDLHKAAVHYVQARFQASLLKLILPE--LDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
E VV+ G+N A R Y A++ E L GY YL R++ + S++
Sbjct: 78 TETGVVKRGRN---AKGHHPRNIDVVTYRHATAFEALVGYWYLAGCEERMQGIFSRI 131
>gi|289433594|ref|YP_003463466.1| hypothetical protein lse_0225 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169838|emb|CBH26376.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 136
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L++L+ D +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKQLIADDFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S + A Y+ ++S E + GYLYL NRL+++M K
Sbjct: 70 EEEAGIAKRGRNAKSYT--VPKNTDPATYSMSTSFEAVLGYLYLAGELNRLQELMEK 124
>gi|421487861|ref|ZP_15935259.1| ribonuclease III domain protein [Streptococcus oralis SK304]
gi|400369823|gb|EJP22820.1| ribonuclease III domain protein [Streptococcus oralis SK304]
Length = 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENVERLEILIS 120
>gi|377809224|ref|YP_005004445.1| RNase3 domain-containing protein [Pediococcus claussenii ATCC
BAA-344]
gi|361055965|gb|AEV94769.1| RNase3 domain protein [Pediococcus claussenii ATCC BAA-344]
Length = 137
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y RRH + L+ ++ V + Q AL+ + +++L+
Sbjct: 10 LNGIALAYLGDSVYEVYIRRHLIEKGLTKPTRLHHTATRYVSAKAQAALISAMQEENFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
E D + G+N S + + +Y ++ E L GYL LTN N RL++
Sbjct: 70 DTEIDAFKKGRNAKSHT--SAKNTSVLIYRISTGFEALVGYLSLTNQNERLDE 120
>gi|224475679|ref|YP_002633285.1| hypothetical protein Sca_0187 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420286|emb|CAL27100.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 133
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFP----PLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N SLAY+GD + + + R+H + P + + R V ++Q A L +L ++
Sbjct: 9 LLNPLSLAYMGDAVLDQFVRKHIILKLRAKPNRLHQQAKRY---VSAKSQAATLDQLNDE 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE+++VR G+N S +T+ K Y ++S LE + G+LYL N +RL+ ++
Sbjct: 66 DWFTEEEQEIVRRGRNAKS-HTKAK-NTDVQTYRKSSGLEAVLGFLYLENREDRLQALLE 123
Query: 231 KL 232
+
Sbjct: 124 AI 125
>gi|375089950|ref|ZP_09736272.1| hypothetical protein HMPREF9708_00662 [Facklamia languida CCUG
37842]
gi|374566236|gb|EHR37483.1| hypothetical protein HMPREF9708_00662 [Facklamia languida CCUG
37842]
Length = 139
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-----VMAVVRC 158
+ P + + + N A+LAY+GD +YEL R+H + + +R V A+ +
Sbjct: 1 MQQPSRNNQEIQLLNGAALAYVGDAVYELAVRQHVIHAGKTQANQLHRAAIHYVSAIKQA 60
Query: 159 ETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
+ A LQ+ D L++EE + + G+N ANT+ K A Y +A+ E L G+L
Sbjct: 61 QVMRAWLQE---DGLLTSEEIQIYKRGRN-HKANTKAK-NASIGDYRQATGFEALIGWLA 115
Query: 219 LTNANR 224
LT ++
Sbjct: 116 LTGQDQ 121
>gi|167765722|ref|ZP_02437775.1| hypothetical protein CLOSS21_00210 [Clostridium sp. SS2/1]
gi|429763127|ref|ZP_19295485.1| RNase3 domain protein [Anaerostipes hadrus DSM 3319]
gi|167712595|gb|EDS23174.1| RNase3 domain protein [Clostridium sp. SS2/1]
gi|291559858|emb|CBL38658.1| Uncharacterized protein conserved in bacteria [butyrate-producing
bacterium SSC/2]
gi|429179428|gb|EKY20677.1| RNase3 domain protein [Anaerostipes hadrus DSM 3319]
Length = 151
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLND 171
P+S ++ SLAYIGD IYE+ R + +S+ +Y+ + ++V+ Q + +K+ +
Sbjct: 20 PKS-YSPLSLAYIGDAIYEIVIRTIVMSAGNMSVNKYHKKSSSMVKASAQKEVFEKI--E 76
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+L+ EE V + G+N S + + A Y +A+ +E L GYLYL + +R+ +++
Sbjct: 77 PFLTEEEMAVYKRGRN--SKSGSVAKNASMMDYRKATGVEALVGYLYLAGDMDRIIELIG 134
Query: 231 KLGF 234
+GF
Sbjct: 135 -IGF 137
>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 394
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLND 171
P+S ++ SLAYIGD IYE+ R + +S+ +Y+ + ++V+ Q + +K+ +
Sbjct: 20 PKS-YSPLSLAYIGDAIYEIVIRTIVMSAGNMSVNKYHKKSSSMVKASAQKEVFEKI--E 76
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+L+ EE V + G+N S + + A Y +A+ +E L GYLYL + +R+ +++
Sbjct: 77 PFLTEEEMAVYKRGRN--SKSGSVAKNASMMDYRKATGVEALVGYLYLAGDMDRIIELIG 134
Query: 231 KLGF 234
+GF
Sbjct: 135 -IGF 137
>gi|381204174|ref|ZP_09911245.1| hypothetical protein SclubJA_00925 [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 134
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 111 GKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
G+ ++ LAY+GD I+EL+ R++ L S + + V+ +VRC+TQ L L
Sbjct: 4 GENWKEWSNFGLAYLGDAIFELWCRQYALQRSQSASQVHQWVVKLVRCQTQSKLAS--LW 61
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
LS EE V + GKN TR K A Y A+ E + GY +L +RL ++M
Sbjct: 62 YEMLSEEELLVFQRGKN-HKPQTRPK-HATVEEYRIATGFECVIGYWHLQQYDRLNEMM 118
>gi|270293220|ref|ZP_06199431.1| cysteine--tRNA ligase [Streptococcus sp. M143]
gi|270279199|gb|EFA25045.1| cysteine--tRNA ligase [Streptococcus sp. M143]
Length = 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQACLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTDKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENLERLETLIS 120
>gi|417934717|ref|ZP_12578037.1| RNase3 domain protein [Streptococcus mitis bv. 2 str. F0392]
gi|340771287|gb|EGR93802.1| RNase3 domain protein [Streptococcus mitis bv. 2 str. F0392]
Length = 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEHV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENIERLETLIS 120
>gi|307710645|ref|ZP_07647078.1| RNase3 domain protein [Streptococcus mitis SK564]
gi|307618588|gb|EFN97731.1| RNase3 domain protein [Streptococcus mitis SK564]
Length = 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENIERLESLIS 120
>gi|417922965|ref|ZP_12566447.1| RNase3 domain protein [Streptococcus mitis SK569]
gi|342837422|gb|EGU71608.1| RNase3 domain protein [Streptococcus mitis SK569]
Length = 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENMERLETLIS 120
>gi|414161194|ref|ZP_11417455.1| hypothetical protein HMPREF9310_01829 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876456|gb|EKS24362.1| hypothetical protein HMPREF9310_01829 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 133
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N SLAY+GD + + Y R H + P + + R V ++Q L+ L+
Sbjct: 9 LLNPLSLAYMGDAVLDQYVRTHIILKLRAKPNRLHQQAKR---FVSAKSQAITLESLMQS 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE ++VR G+N S +T+ K Y ++S LE + G+LYL + ++RLE ++
Sbjct: 66 DWFTEEELEIVRRGRNAKS-HTKAK-NTDIQTYRKSSGLEAVIGFLYLDHQSDRLESLLE 123
Query: 231 KL 232
++
Sbjct: 124 RI 125
>gi|392330611|ref|ZP_10275226.1| hypothetical protein SCAZ3_01645 [Streptococcus canis FSL Z3-227]
gi|391418290|gb|EIQ81102.1| hypothetical protein SCAZ3_01645 [Streptococcus canis FSL Z3-227]
Length = 133
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
++ N +LA+ GD +Y Y RRH +F P + R V + Q L+Q +L
Sbjct: 8 NLINGIALAFEGDAVYSYYIRRHLIFQGKTKPSQLHHLATR---YVSAKAQANLIQAMLE 64
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
L+ +E D+ R G+N N+ TK + A Y ++ E + GYL +T+ RLE++
Sbjct: 65 AQLLTEKEEDIYRRGRNT---NSHTKAKNADVVTYRMSTGFEAVMGYLDMTDQQARLEEL 121
Query: 229 MS 230
++
Sbjct: 122 IT 123
>gi|260589562|ref|ZP_05855475.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583]
gi|260540130|gb|EEX20699.1| cysteine--tRNA ligase [Blautia hansenii DSM 20583]
Length = 144
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD IYEL R + + + + R +V+ Q +++KL YL+ EE
Sbjct: 26 TLAYIGDAIYELVIRTILVEKGNTQVNKLHQRASKLVKASAQSEIIEKL--KPYLTEEEM 83
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKLGFTNGS 238
+ + G+N S + A + Y RA+ E L G+LYLT +R+ +++ K+G T G
Sbjct: 84 GIFKRGRNAKSFT--MAKNASMSDYRRATGFEALMGHLYLTEQWDRMLELI-KIGITEGE 140
>gi|331082989|ref|ZP_08332108.1| hypothetical protein HMPREF0992_01032 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330399726|gb|EGG79387.1| hypothetical protein HMPREF0992_01032 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 144
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD IYEL R + + + + R +V+ Q +++KL YL+ EE
Sbjct: 26 TLAYIGDAIYELVIRTILVEKGNTQVNKLHQRASKLVKASAQSEIIEKL--KPYLTEEEM 83
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKLGFTNGS 238
+ + G+N S + A + Y RA+ E L G+LYLT +R+ +++ K+G T G
Sbjct: 84 GIFKRGRNAKSFT--MAKNASMSDYRRATGFEALMGHLYLTEQWDRMLELI-KIGITEGE 140
>gi|374298148|ref|YP_005048339.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827642|gb|AEV70415.1| hypothetical protein Clocl_3979 [Clostridium clariflavum DSM 19732]
Length = 140
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE++ R + + + + + + R + V+ + Q ++ +++ L+ +E D
Sbjct: 28 LAYIGDAVYEVFIRTYLISEGNVPVHKLHKRSIEYVKAKAQSDIIHRIMEK--LNPDELD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKLGFTNG 237
VVR G+N S + A Y A+ E+L GYLYL N RL +++ K+ + G
Sbjct: 86 VVRRGRNAKSGT--IPKNADVTEYKYATGFESLIGYLYLKRDNDRLMEIL-KMAISEG 140
>gi|431792449|ref|YP_007219354.1| hypothetical protein Desdi_0412 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782675|gb|AGA67958.1| hypothetical protein Desdi_0412 [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 174
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 104 LPNPPKVGKPRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCET 160
LP P PRS NA +LAY+GD +YEL+ R H L + + ++ VR T
Sbjct: 11 LPEP----MPRSWQEMNALTLAYLGDAVYELWVRTHLLNSGHEKVNDLHHFATKYVRAAT 66
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q LL ++L +L +E VV G+N + ++ Y A++ E L G+ LT
Sbjct: 67 QAKLLHQIL--PHLDEQETSVVHRGRNAKGGHPKS---TDVVTYRHATAFEALVGFWQLT 121
Query: 221 N 221
+
Sbjct: 122 D 122
>gi|225871261|ref|YP_002747208.1| membrane protein [Streptococcus equi subsp. equi 4047]
gi|225700665|emb|CAW95244.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
Length = 135
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA++GD +Y Y RRH +F + + + V + Q +L+Q +L L
Sbjct: 9 LINGIALAFVGDAVYSYYIRRHLIFQGQTKPNKLHYLATKYVSAKAQASLIQAMLEAQLL 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
+ +E+D+ + G+N N+ TK + A Y ++ E + GYL +T RLE
Sbjct: 69 TEKEKDIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAIMGYLDMTGQTERLE 119
>gi|406839033|ref|ZP_11098627.1| hypothetical protein LvinD2_10747 [Lactobacillus vini DSM 20605]
Length = 134
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y RRH L +S + + V + Q L+QK+ + L
Sbjct: 11 NGIALAYMGDAIYEVYVRRHLLQKGISKPTKLQHLATHYVSAKAQAELIQKMTKEQLLEP 70
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E ++ + G+N S + + Y ++ E + GYL+L N + RLE +
Sbjct: 71 RELEIFKRGRNAKSHT--SAKNTDVITYRISTGFEAVFGYLFLQNEHLRLEKL 121
>gi|289168427|ref|YP_003446696.1| hypothetical protein smi_1594 [Streptococcus mitis B6]
gi|307708307|ref|ZP_07644774.1| RNase3 domain protein [Streptococcus mitis NCTC 12261]
gi|322377814|ref|ZP_08052303.1| cysteine--tRNA ligase [Streptococcus sp. M334]
gi|385262954|ref|ZP_10041051.1| ribonuclease III domain protein [Streptococcus sp. SK643]
gi|417849887|ref|ZP_12495802.1| RNase3 domain protein [Streptococcus mitis SK1080]
gi|288907994|emb|CBJ22834.1| conserved hypothetical protein [Streptococcus mitis B6]
gi|307615753|gb|EFN94959.1| RNase3 domain protein [Streptococcus mitis NCTC 12261]
gi|321281237|gb|EFX58248.1| cysteine--tRNA ligase [Streptococcus sp. M334]
gi|339455220|gb|EGP67827.1| RNase3 domain protein [Streptococcus mitis SK1080]
gi|385188929|gb|EIF36399.1| ribonuclease III domain protein [Streptococcus sp. SK643]
Length = 128
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQVL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|307706128|ref|ZP_07642947.1| RNase3 domain protein [Streptococcus mitis SK321]
gi|307618528|gb|EFN97676.1| RNase3 domain protein [Streptococcus mitis SK321]
Length = 128
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEHV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENMERLETLIS 120
>gi|307704343|ref|ZP_07641260.1| RNase3 domain protein [Streptococcus mitis SK597]
gi|307622103|gb|EFO01123.1| RNase3 domain protein [Streptococcus mitis SK597]
Length = 128
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|171778430|ref|ZP_02919588.1| hypothetical protein STRINF_00439 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282831|gb|EDT48255.1| RNase3 domain protein [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 133
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F ++ + + + V + Q L+ +L
Sbjct: 7 NLINGIALAFEGDAIYSTYIRKHLIFQGMTKPNQLHRKATMYVSAKAQAMLINMMLEAQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T +RLE+++
Sbjct: 67 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTEQIDRLEEII 121
>gi|358061012|ref|ZP_09147698.1| hypothetical protein SS7213T_12172 [Staphylococcus simiae CCM 7213]
gi|357256535|gb|EHJ06897.1| hypothetical protein SS7213T_12172 [Staphylococcus simiae CCM 7213]
Length = 134
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + L ++ NR+ V V ++Q L+ L+ +
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRSYIV---LKLKSKPNRLHQVAKRYVSAKSQAQTLELLIEE 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
+ + EE D+++ G+N A + TK + Y ++S+LE + GYLYLT RLE ++
Sbjct: 68 QWFTDEEMDILKRGRN---AKSYTKAKNTDIQTYRKSSALEAVLGYLYLTKQEERLEQLL 124
Query: 230 SKL 232
+K+
Sbjct: 125 TKI 127
>gi|354806675|ref|ZP_09040156.1| RNase3 domain protein [Lactobacillus curvatus CRL 705]
gi|354514859|gb|EHE86825.1| RNase3 domain protein [Lactobacillus curvatus CRL 705]
Length = 135
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y R H L L+ +V V + Q AL+ +++D+YL+
Sbjct: 7 LNGIALAYMGDSAYEVYVRAHLLELGLTKPTRLQQVATHYVSAKAQAALIGLMIDDNYLT 66
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT 220
EE ++ + G+N A + TK + + Y ++ E + GYLYLT
Sbjct: 67 EEEMNIFKRGRN---AKSYTKAKNTSVSTYRTSTGFEAVFGYLYLT 109
>gi|418976190|ref|ZP_13524076.1| RNase3 domain protein [Streptococcus mitis SK575]
gi|383351864|gb|EID29627.1| RNase3 domain protein [Streptococcus mitis SK575]
Length = 128
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQVL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|81429292|ref|YP_396293.1| hypothetical protein LSA1680 [Lactobacillus sakei subsp. sakei 23K]
gi|78610935|emb|CAI55987.1| Hypothetical protein LCA_1680 [Lactobacillus sakei subsp. sakei
23K]
Length = 139
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y R H L L+ +V V + Q AL+ +++D+YL+
Sbjct: 11 LNGIALAYMGDSAYEVYVRAHLLELGLTKPTRLQQVATHYVSAKAQAALIGLMIDDNYLT 70
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT 220
EE ++ + G+N A + TK + + Y ++ E + GYLYLT
Sbjct: 71 EEEMNIFKRGRN---AKSYTKAKNTSVSTYRTSTGFEAVFGYLYLT 113
>gi|253682273|ref|ZP_04863070.1| RNase3 domain protein [Clostridium botulinum D str. 1873]
gi|416351622|ref|ZP_11681170.1| hypothetical protein CBCST_07175 [Clostridium botulinum C str.
Stockholm]
gi|253561985|gb|EES91437.1| RNase3 domain protein [Clostridium botulinum D str. 1873]
gi|338195957|gb|EGO88184.1| hypothetical protein CBCST_07175 [Clostridium botulinum C str.
Stockholm]
Length = 137
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCET 160
+L N + + + N LA+IGD IYE++ R++ + +S + + + ++ V+ +
Sbjct: 5 FLKNKFTINEAMQL-NPLVLAFIGDAIYEVFVRKYLVDEHRDMSAHKLHIKAVSFVKAHS 63
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q L+++++ L+ EE + + G+N S R A Y A+ E L G+LYLT
Sbjct: 64 QSELMKEII--EVLTEEECRIFKRGRNAKSGT--VPRNADVREYRMATGFEALMGFLYLT 119
Query: 221 NA-NRLEDVMS 230
N +RL ++M+
Sbjct: 120 NQLDRLNELMN 130
>gi|417092059|ref|ZP_11956793.1| ribonuclease III [Streptococcus suis R61]
gi|353532628|gb|EHC02297.1| ribonuclease III [Streptococcus suis R61]
Length = 132
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V Q +L+ LL
Sbjct: 8 NLINGIALAFEGDAVYSMYIRRHLIFKGLTKPNKLHGEANKYVSARAQASLISALLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RLE++++
Sbjct: 68 LTEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQIERLEELVA 123
>gi|419800741|ref|ZP_14326000.1| RNase3 domain protein [Streptococcus parasanguinis F0449]
gi|385694095|gb|EIG24720.1| RNase3 domain protein [Streptococcus parasanguinis F0449]
Length = 132
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH +F ++ + + V Q +L++ +L L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLIFQGMTKPNKLHQAATRYVSARAQASLIESMLEQEIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T +RLE+++
Sbjct: 66 TEKELEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGELSRLEELI 119
>gi|387626007|ref|YP_006062179.1| putative ribomuclease [Streptococcus pneumoniae INV104]
gi|417693531|ref|ZP_12342720.1| hypothetical protein SPAR120_0579 [Streptococcus pneumoniae
GA47901]
gi|419442092|ref|ZP_13982124.1| hypothetical protein SPAR26_0648 [Streptococcus pneumoniae GA13224]
gi|421306776|ref|ZP_15757422.1| hypothetical protein SPAR166_0563 [Streptococcus pneumoniae
GA60132]
gi|444382537|ref|ZP_21180739.1| RNase3 domain protein [Streptococcus pneumoniae PCS8106]
gi|444384971|ref|ZP_21183055.1| RNase3 domain protein [Streptococcus pneumoniae PCS8203]
gi|301793789|emb|CBW36178.1| putative ribomuclease [Streptococcus pneumoniae INV104]
gi|332204614|gb|EGJ18679.1| hypothetical protein SPAR120_0579 [Streptococcus pneumoniae
GA47901]
gi|379554616|gb|EHZ19692.1| hypothetical protein SPAR26_0648 [Streptococcus pneumoniae GA13224]
gi|395908739|gb|EJH19616.1| hypothetical protein SPAR166_0563 [Streptococcus pneumoniae
GA60132]
gi|444250921|gb|ELU57395.1| RNase3 domain protein [Streptococcus pneumoniae PCS8203]
gi|444252162|gb|ELU58627.1| RNase3 domain protein [Streptococcus pneumoniae PCS8106]
Length = 128
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>gi|150392182|ref|YP_001322231.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149952044|gb|ABR50572.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 142
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 122 LAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD I+E+Y R H + + + Y+ + V+ ++Q +++ L ++ LS EE
Sbjct: 27 LAYIGDAIFEVYVRNHLITQTKMLVGAYHRDAIGYVKAQSQATIVRTL--EAELSEEEWR 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNANRLEDVMSK 231
V++ G+N A + A Y A+ E L GYL Y+ RL +VMS+
Sbjct: 85 VIKKGRNQKPAT--VPKNADLMDYKYATGFEALIGYLFYMGKTERLMEVMSR 134
>gi|418168692|ref|ZP_12805338.1| hypothetical protein SPAR56_0783 [Streptococcus pneumoniae GA19077]
gi|421272243|ref|ZP_15723090.1| RNase3 domain protein [Streptococcus pneumoniae SPAR55]
gi|353836611|gb|EHE16699.1| hypothetical protein SPAR56_0783 [Streptococcus pneumoniae GA19077]
gi|395877802|gb|EJG88871.1| RNase3 domain protein [Streptococcus pneumoniae SPAR55]
Length = 128
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGTALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>gi|158319521|ref|YP_001512028.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
gi|158139720|gb|ABW18032.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
Length = 149
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 122 LAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE++ R + + +S+ +Y+ R VR + Q ++ L +S LS E
Sbjct: 28 LAYIGDALYEVFIRNYLINEMTVSVNQYHKRATHYVRAKAQSHVVHAL--ESELSEPEWT 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNANRLEDVMSK-------- 231
+V+ G+N SA + A Y A+ E L GYL Y+ +RL +MSK
Sbjct: 86 IVKRGRNQKSAT--VPKNADLTEYKYATGFEALLGYLFYIGQYDRLHYLMSKAVALINHD 143
Query: 232 LGFTNG 237
LG NG
Sbjct: 144 LGDQNG 149
>gi|429766432|ref|ZP_19298698.1| RNase3 domain protein [Clostridium celatum DSM 1785]
gi|429184601|gb|EKY25612.1| RNase3 domain protein [Clostridium celatum DSM 1785]
Length = 136
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLL 169
K + N LA +GD +YEL+ R L + + + V A+ V+ ++Q A++ +
Sbjct: 13 KEARLLNPLQLALVGDGVYELFIRNSILANNIELSAHKMHVKAIGYVKAKSQSAIMHAI- 71
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+ YL+ +E + + G+N SA + A Y A+ E L GYLYLT N RLE V
Sbjct: 72 -EEYLTEDESYIFKRGRNAKSAT--VPKNADVRDYRMATGFEALVGYLYLTGNNERLEFV 128
Query: 229 MS 230
Sbjct: 129 FE 130
>gi|419766584|ref|ZP_14292776.1| ribonuclease III domain protein [Streptococcus mitis SK579]
gi|383353943|gb|EID31531.1| ribonuclease III domain protein [Streptococcus mitis SK579]
Length = 128
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|296333092|ref|ZP_06875546.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672794|ref|YP_003864465.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149708|gb|EFG90603.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411037|gb|ADM36155.1| ribonuclease for 23S RNA maturation [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 143
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L + S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQDQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L G+L+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGHLFL---EKKEERLSQL 124
>gi|302024503|ref|ZP_07249714.1| hypothetical protein Ssui0_08144 [Streptococcus suis 05HAS68]
Length = 203
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ LL L
Sbjct: 9 LINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHGEANKYVSAKAQAGLISALLEAQLL 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 69 TEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQTERLDELVG 123
>gi|223933938|ref|ZP_03625898.1| ribonuclease III [Streptococcus suis 89/1591]
gi|330833539|ref|YP_004402364.1| ribonuclease III [Streptococcus suis ST3]
gi|386584951|ref|YP_006081354.1| ribonuclease III [Streptococcus suis D9]
gi|223897385|gb|EEF63786.1| ribonuclease III [Streptococcus suis 89/1591]
gi|329307762|gb|AEB82178.1| ribonuclease III [Streptococcus suis ST3]
gi|353737097|gb|AER18106.1| ribonuclease III [Streptococcus suis D9]
Length = 132
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ LL
Sbjct: 8 NLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHGEANKYVSAKAQAGLISALLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 68 LTEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQTERLDELVG 123
>gi|398309197|ref|ZP_10512671.1| YazC [Bacillus mojavensis RO-H-1]
Length = 139
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLRNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE V++ G+N S + Y +++ E L GYL+L
Sbjct: 74 EEEAVLKRGRNAKSGT--IPKNTDVQTYRYSTAFEALLGYLFL 114
>gi|312868154|ref|ZP_07728358.1| RNase3 domain protein [Streptococcus parasanguinis F0405]
gi|337283283|ref|YP_004622754.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
gi|387878957|ref|YP_006309260.1| hypothetical protein Spaf_0436 [Streptococcus parasanguinis FW213]
gi|417918610|ref|ZP_12562160.1| RNase3 domain protein [Streptococcus parasanguinis SK236]
gi|311096558|gb|EFQ54798.1| RNase3 domain protein [Streptococcus parasanguinis F0405]
gi|335370876|gb|AEH56826.1| ribonuclease III [Streptococcus parasanguinis ATCC 15912]
gi|342828280|gb|EGU62654.1| RNase3 domain protein [Streptococcus parasanguinis SK236]
gi|386792414|gb|AFJ25449.1| hypothetical protein Spaf_0436 [Streptococcus parasanguinis FW213]
Length = 132
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH +F ++ + + V Q +L++ +L L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLIFQGMTKPNKLHQAATRYVSARAQASLIESMLEQEIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T +RLE+++
Sbjct: 66 TEKELEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGELSRLEELI 119
>gi|212721212|ref|NP_001132321.1| uncharacterized protein LOC100193763 [Zea mays]
gi|194694072|gb|ACF81120.1| unknown [Zea mays]
Length = 127
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 80 DLLKHPTQGVVANLDESYMGYERW-LPNPPKVGKPRSVFNAASLAYIGDCIYELYAR 135
DL ++ +YMG E+W LP P V KPRS+++A SLAY+GDCIYE+ R
Sbjct: 67 DLFARSSEAQGGVKKSTYMGLEKWWLPPAPVVKKPRSLYSAVSLAYLGDCIYEVRVR 123
>gi|326202356|ref|ZP_08192225.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987474|gb|EGD48301.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 139
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 112 KPRSVFNAA--SLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKL 168
KP V N LAYIGD +YE+Y R + S + + + V+ ++Q ++ +
Sbjct: 16 KPMDVMNLQPLVLAYIGDAVYEVYIRTMLVVNNKSNVNMLHKMSVKYVKAKSQADIVHR- 74
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+ND L+A+E+D+VR G+N SA + A Y ++ E L GYLYL N
Sbjct: 75 VNDR-LTADEQDIVRRGRNAKSAT--VPKHADVTDYRYSTGFEALIGYLYLMN 124
>gi|15900501|ref|NP_345105.1| hypothetical protein SP_0592 [Streptococcus pneumoniae TIGR4]
gi|15902564|ref|NP_358114.1| hypothetical protein spr0520 [Streptococcus pneumoniae R6]
gi|111657663|ref|ZP_01408393.1| hypothetical protein SpneT_02001140 [Streptococcus pneumoniae
TIGR4]
gi|116515371|ref|YP_816018.1| hypothetical protein SPD_0516 [Streptococcus pneumoniae D39]
gi|148983974|ref|ZP_01817293.1| hypothetical protein CGSSp3BS71_07569 [Streptococcus pneumoniae
SP3-BS71]
gi|148988956|ref|ZP_01820356.1| hypothetical protein CGSSp6BS73_02245 [Streptococcus pneumoniae
SP6-BS73]
gi|148992297|ref|ZP_01822020.1| fructose-bisphosphate aldolase [Streptococcus pneumoniae SP9-BS68]
gi|148998268|ref|ZP_01825737.1| hypothetical protein CGSSp11BS70_03671 [Streptococcus pneumoniae
SP11-BS70]
gi|149002272|ref|ZP_01827214.1| hypothetical protein CGSSp14BS69_01484 [Streptococcus pneumoniae
SP14-BS69]
gi|149005704|ref|ZP_01829443.1| hypothetical protein CGSSp18BS74_09065 [Streptococcus pneumoniae
SP18-BS74]
gi|149010788|ref|ZP_01832159.1| fructose-bisphosphate aldolase [Streptococcus pneumoniae SP19-BS75]
gi|149021554|ref|ZP_01835609.1| hypothetical protein CGSSp23BS72_06799 [Streptococcus pneumoniae
SP23-BS72]
gi|168482828|ref|ZP_02707780.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC1873-00]
gi|168485707|ref|ZP_02710215.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC1087-00]
gi|168490518|ref|ZP_02714661.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576505|ref|ZP_02722379.1| ribonuclease III family protein [Streptococcus pneumoniae MLV-016]
gi|169834221|ref|YP_001694076.1| ribonuclease III family protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683527|ref|YP_001835274.1| hypothetical protein SPCG_0557 [Streptococcus pneumoniae CGSP14]
gi|194398019|ref|YP_002037255.1| hypothetical protein SPG_0540 [Streptococcus pneumoniae G54]
gi|225856295|ref|YP_002737806.1| ribonuclease III family protein [Streptococcus pneumoniae P1031]
gi|225858429|ref|YP_002739939.1| ribonuclease III family protein [Streptococcus pneumoniae 70585]
gi|225860593|ref|YP_002742102.1| ribonuclease III family protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650135|ref|ZP_04524387.1| ribonuclease III family protein [Streptococcus pneumoniae CCRI
1974]
gi|237821666|ref|ZP_04597511.1| ribonuclease III family protein [Streptococcus pneumoniae CCRI
1974M2]
gi|298230927|ref|ZP_06964608.1| ribonuclease III family protein [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254671|ref|ZP_06978257.1| ribonuclease III family protein [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502387|ref|YP_003724327.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|303253921|ref|ZP_07340042.1| hypothetical protein CGSSpBS455_00501 [Streptococcus pneumoniae
BS455]
gi|303260087|ref|ZP_07346060.1| hypothetical protein CGSSp9vBS293_01365 [Streptococcus pneumoniae
SP-BS293]
gi|303261271|ref|ZP_07347219.1| hypothetical protein CGSSp14BS292_08030 [Streptococcus pneumoniae
SP14-BS292]
gi|303263936|ref|ZP_07349857.1| hypothetical protein CGSSpBS397_04997 [Streptococcus pneumoniae
BS397]
gi|303265927|ref|ZP_07351823.1| hypothetical protein CGSSpBS457_00660 [Streptococcus pneumoniae
BS457]
gi|303268309|ref|ZP_07354106.1| hypothetical protein CGSSpBS458_02274 [Streptococcus pneumoniae
BS458]
gi|307067212|ref|YP_003876178.1| hypothetical protein SPAP_0583 [Streptococcus pneumoniae AP200]
gi|307126795|ref|YP_003878826.1| ribonuclease III family protein [Streptococcus pneumoniae 670-6B]
gi|387757055|ref|YP_006064034.1| putative ribomuclease [Streptococcus pneumoniae OXC141]
gi|387758876|ref|YP_006065854.1| putative ribomuclease [Streptococcus pneumoniae INV200]
gi|387787773|ref|YP_006252841.1| ribonuclease III family protein [Streptococcus pneumoniae ST556]
gi|410476053|ref|YP_006742812.1| cysteine--tRNA ligase [Streptococcus pneumoniae gamPNI0373]
gi|417312179|ref|ZP_12098895.1| hypothetical protein SPAR5_0573 [Streptococcus pneumoniae GA04375]
gi|417676360|ref|ZP_12325773.1| hypothetical protein SPAR148_0558 [Streptococcus pneumoniae
GA17545]
gi|417686057|ref|ZP_12335336.1| hypothetical protein SPAR68_0616 [Streptococcus pneumoniae GA41301]
gi|417695760|ref|ZP_12344940.1| hypothetical protein SPAR93_0628 [Streptococcus pneumoniae GA47368]
gi|417698032|ref|ZP_12347205.1| hypothetical protein SPAR69_0584 [Streptococcus pneumoniae GA41317]
gi|418075710|ref|ZP_12712951.1| hypothetical protein SPAR98_0631 [Streptococcus pneumoniae GA47502]
gi|418082484|ref|ZP_12719686.1| hypothetical protein SPAR81_0569 [Streptococcus pneumoniae GA44288]
gi|418084686|ref|ZP_12721872.1| hypothetical protein SPAR90_0588 [Streptococcus pneumoniae GA47281]
gi|418091223|ref|ZP_12728368.1| hypothetical protein SPAR84_0592 [Streptococcus pneumoniae GA44452]
gi|418093449|ref|ZP_12730579.1| hypothetical protein SPAR110_0570 [Streptococcus pneumoniae
GA49138]
gi|418095694|ref|ZP_12732810.1| hypothetical protein SPAR40_0622 [Streptococcus pneumoniae GA16531]
gi|418100630|ref|ZP_12737718.1| hypothetical protein SPAR128_1046 [Streptococcus pneumoniae
7286-06]
gi|418102294|ref|ZP_12739371.1| hypothetical protein SPAR143_0571 [Streptococcus pneumoniae NP070]
gi|418106967|ref|ZP_12744007.1| hypothetical protein SPAR70_0506 [Streptococcus pneumoniae GA41410]
gi|418109561|ref|ZP_12746590.1| hypothetical protein SPAR113_0634 [Streptococcus pneumoniae
GA49447]
gi|418111947|ref|ZP_12748950.1| hypothetical protein SPAR72_0645 [Streptococcus pneumoniae GA41538]
gi|418118541|ref|ZP_12755501.1| hypothetical protein SPAR54_0578 [Streptococcus pneumoniae GA18523]
gi|418120684|ref|ZP_12757630.1| hypothetical protein SPAR80_0550 [Streptococcus pneumoniae GA44194]
gi|418129763|ref|ZP_12766647.1| hypothetical protein SPAR14_0550 [Streptococcus pneumoniae GA07643]
gi|418132433|ref|ZP_12769308.1| hypothetical protein SPAR22_1013 [Streptococcus pneumoniae GA11304]
gi|418138917|ref|ZP_12775748.1| hypothetical protein SPAR28_0550 [Streptococcus pneumoniae GA13338]
gi|418141208|ref|ZP_12778021.1| hypothetical protein SPAR30_0586 [Streptococcus pneumoniae GA13455]
gi|418143415|ref|ZP_12780215.1| hypothetical protein SPAR31_0597 [Streptococcus pneumoniae GA13494]
gi|418145811|ref|ZP_12782597.1| hypothetical protein SPAR32_0582 [Streptococcus pneumoniae GA13637]
gi|418148047|ref|ZP_12784812.1| hypothetical protein SPAR34_0535 [Streptococcus pneumoniae GA13856]
gi|418150170|ref|ZP_12786925.1| hypothetical protein SPAR37_0577 [Streptococcus pneumoniae GA14798]
gi|418152346|ref|ZP_12789086.1| hypothetical protein SPAR38_0582 [Streptococcus pneumoniae GA16121]
gi|418154638|ref|ZP_12791369.1| hypothetical protein SPAR39_0595 [Streptococcus pneumoniae GA16242]
gi|418156878|ref|ZP_12793596.1| hypothetical protein SPAR41_0655 [Streptococcus pneumoniae GA16833]
gi|418159243|ref|ZP_12795946.1| hypothetical protein SPAR43_0576 [Streptococcus pneumoniae GA17227]
gi|418161639|ref|ZP_12798330.1| hypothetical protein SPAR49_0630 [Streptococcus pneumoniae GA17328]
gi|418163945|ref|ZP_12800619.1| hypothetical protein SPAR45_0579 [Streptococcus pneumoniae GA17371]
gi|418166217|ref|ZP_12802873.1| hypothetical protein SPAR52_0635 [Streptococcus pneumoniae GA17971]
gi|418170819|ref|ZP_12807446.1| hypothetical protein SPAR58_0598 [Streptococcus pneumoniae GA19451]
gi|418175407|ref|ZP_12812005.1| hypothetical protein SPAR71_0641 [Streptococcus pneumoniae GA41437]
gi|418179960|ref|ZP_12816533.1| hypothetical protein SPAR74_0565 [Streptococcus pneumoniae GA41688]
gi|418182202|ref|ZP_12818763.1| hypothetical protein SPAR78_0604 [Streptococcus pneumoniae GA43380]
gi|418184370|ref|ZP_12820918.1| hypothetical protein SPAR91_0559 [Streptococcus pneumoniae GA47283]
gi|418186605|ref|ZP_12823135.1| hypothetical protein SPAR92_0572 [Streptococcus pneumoniae GA47360]
gi|418188823|ref|ZP_12825338.1| hypothetical protein SPAR94_0577 [Streptococcus pneumoniae GA47373]
gi|418193249|ref|ZP_12829742.1| hypothetical protein SPAR119_0530 [Streptococcus pneumoniae
GA47439]
gi|418195805|ref|ZP_12832285.1| hypothetical protein SPAR103_0998 [Streptococcus pneumoniae
GA47688]
gi|418199746|ref|ZP_12836193.1| hypothetical protein SPAR109_0551 [Streptococcus pneumoniae
GA47976]
gi|418201867|ref|ZP_12838298.1| hypothetical protein SPAR115_0582 [Streptococcus pneumoniae
GA52306]
gi|418218338|ref|ZP_12845006.1| hypothetical protein SPAR145_0618 [Streptococcus pneumoniae NP127]
gi|418220527|ref|ZP_12847183.1| hypothetical protein SPAR104_0450 [Streptococcus pneumoniae
GA47751]
gi|418222881|ref|ZP_12849526.1| hypothetical protein SPAR127_0576 [Streptococcus pneumoniae
5185-06]
gi|418225033|ref|ZP_12851662.1| hypothetical protein SPAR141_0559 [Streptococcus pneumoniae NP112]
gi|418227197|ref|ZP_12853817.1| hypothetical protein SPAR135_0574 [Streptococcus pneumoniae
3063-00]
gi|418229332|ref|ZP_12855941.1| hypothetical protein SPAR136_0580 [Streptococcus pneumoniae
EU-NP01]
gi|418231682|ref|ZP_12858270.1| hypothetical protein SPAR13_0583 [Streptococcus pneumoniae GA07228]
gi|418235979|ref|ZP_12862548.1| hypothetical protein SPAR59_0521 [Streptococcus pneumoniae GA19690]
gi|418238177|ref|ZP_12864733.1| hypothetical protein SPAR146_0629 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422248|ref|ZP_13962467.1| hypothetical protein SPAR76_0582 [Streptococcus pneumoniae GA43264]
gi|419424642|ref|ZP_13964843.1| hypothetical protein SPAR131_0569 [Streptococcus pneumoniae
7533-05]
gi|419426767|ref|ZP_13966950.1| hypothetical protein SPAR130_0561 [Streptococcus pneumoniae
5652-06]
gi|419428867|ref|ZP_13969036.1| hypothetical protein SPAR25_0550 [Streptococcus pneumoniae GA11856]
gi|419435480|ref|ZP_13975576.1| hypothetical protein SPAR126_0549 [Streptococcus pneumoniae
8190-05]
gi|419437564|ref|ZP_13977637.1| hypothetical protein SPAR6_0497 [Streptococcus pneumoniae GA13499]
gi|419444219|ref|ZP_13984234.1| hypothetical protein SPAR60_0560 [Streptococcus pneumoniae GA19923]
gi|419446339|ref|ZP_13986344.1| hypothetical protein SPAR129_0568 [Streptococcus pneumoniae
7879-04]
gi|419449201|ref|ZP_13989198.1| hypothetical protein SPAR132_1281 [Streptococcus pneumoniae
4075-00]
gi|419450584|ref|ZP_13990571.1| hypothetical protein SPAR137_0560 [Streptococcus pneumoniae
EU-NP02]
gi|419452710|ref|ZP_13992684.1| hypothetical protein SPAR138_0566 [Streptococcus pneumoniae
EU-NP03]
gi|419454986|ref|ZP_13994947.1| hypothetical protein SPAR139_0679 [Streptococcus pneumoniae
EU-NP04]
gi|419457923|ref|ZP_13997867.1| hypothetical protein SPAR1_1377 [Streptococcus pneumoniae GA02254]
gi|419461733|ref|ZP_14001649.1| hypothetical protein SPAR3_0631 [Streptococcus pneumoniae GA02714]
gi|419466214|ref|ZP_14006098.1| hypothetical protein SPAR8_0539 [Streptococcus pneumoniae GA05248]
gi|419470572|ref|ZP_14010431.1| hypothetical protein SPAR15_0517 [Streptococcus pneumoniae GA07914]
gi|419474975|ref|ZP_14014817.1| hypothetical protein SPAR36_0577 [Streptococcus pneumoniae GA14688]
gi|419477264|ref|ZP_14017089.1| hypothetical protein SPAR53_0589 [Streptococcus pneumoniae GA18068]
gi|419479448|ref|ZP_14019256.1| hypothetical protein SPAR57_0512 [Streptococcus pneumoniae GA19101]
gi|419481621|ref|ZP_14021415.1| hypothetical protein SPAR65_0539 [Streptococcus pneumoniae GA40563]
gi|419486079|ref|ZP_14025846.1| hypothetical protein SPAR79_0586 [Streptococcus pneumoniae GA44128]
gi|419488457|ref|ZP_14028210.1| hypothetical protein SPAR83_0593 [Streptococcus pneumoniae GA44386]
gi|419490536|ref|ZP_14030277.1| hypothetical protein SPAR88_0526 [Streptococcus pneumoniae GA47179]
gi|419492745|ref|ZP_14032472.1| hypothetical protein SPAR89_0561 [Streptococcus pneumoniae GA47210]
gi|419494897|ref|ZP_14034617.1| hypothetical protein SPAR97_0530 [Streptococcus pneumoniae GA47461]
gi|419499140|ref|ZP_14038839.1| hypothetical protein SPAR101_0514 [Streptococcus pneumoniae
GA47597]
gi|419501349|ref|ZP_14041035.1| hypothetical protein SPAR102_0588 [Streptococcus pneumoniae
GA47628]
gi|419503424|ref|ZP_14043096.1| hypothetical protein SPAR105_0503 [Streptococcus pneumoniae
GA47760]
gi|419505553|ref|ZP_14045214.1| hypothetical protein SPAR111_0583 [Streptococcus pneumoniae
GA49194]
gi|419510232|ref|ZP_14049876.1| hypothetical protein SPAR142_0896 [Streptococcus pneumoniae NP141]
gi|419512008|ref|ZP_14051642.1| RNase3 domain protein [Streptococcus pneumoniae GA05578]
gi|419514166|ref|ZP_14053794.1| hypothetical protein SPAR152_0526 [Streptococcus pneumoniae
England14-9]
gi|419516292|ref|ZP_14055910.1| RNase3 domain protein [Streptococcus pneumoniae GA02506]
gi|419520556|ref|ZP_14060153.1| RNase3 domain protein [Streptococcus pneumoniae GA05245]
gi|419522796|ref|ZP_14062378.1| RNase3 domain protein [Streptococcus pneumoniae GA13723]
gi|419525351|ref|ZP_14064916.1| RNase3 domain protein [Streptococcus pneumoniae GA14373]
gi|419527438|ref|ZP_14066983.1| RNase3 domain protein [Streptococcus pneumoniae GA17719]
gi|419529957|ref|ZP_14069488.1| RNase3 domain protein [Streptococcus pneumoniae GA40028]
gi|419531844|ref|ZP_14071363.1| RNase3 domain protein [Streptococcus pneumoniae GA47794]
gi|419534029|ref|ZP_14073536.1| RNase3 domain protein [Streptococcus pneumoniae GA17457]
gi|421206042|ref|ZP_15663107.1| RNase3 domain protein [Streptococcus pneumoniae 2090008]
gi|421208435|ref|ZP_15665460.1| RNase3 domain protein [Streptococcus pneumoniae 2070005]
gi|421210564|ref|ZP_15667553.1| RNase3 domain protein [Streptococcus pneumoniae 2070035]
gi|421212612|ref|ZP_15669574.1| RNase3 domain protein [Streptococcus pneumoniae 2070108]
gi|421214803|ref|ZP_15671734.1| RNase3 domain protein [Streptococcus pneumoniae 2070109]
gi|421219800|ref|ZP_15676655.1| RNase3 domain protein [Streptococcus pneumoniae 2070425]
gi|421222130|ref|ZP_15678924.1| RNase3 domain protein [Streptococcus pneumoniae 2070531]
gi|421224450|ref|ZP_15681196.1| RNase3 domain protein [Streptococcus pneumoniae 2070768]
gi|421226765|ref|ZP_15683479.1| RNase3 domain protein [Streptococcus pneumoniae 2072047]
gi|421229249|ref|ZP_15685926.1| RNase3 domain protein [Streptococcus pneumoniae 2061376]
gi|421231381|ref|ZP_15688029.1| RNase3 domain protein [Streptococcus pneumoniae 2080076]
gi|421233614|ref|ZP_15690236.1| RNase3 domain protein [Streptococcus pneumoniae 2061617]
gi|421235772|ref|ZP_15692373.1| RNase3 domain protein [Streptococcus pneumoniae 2071004]
gi|421238246|ref|ZP_15694816.1| RNase3 domain protein [Streptococcus pneumoniae 2071247]
gi|421240173|ref|ZP_15696722.1| RNase3 domain protein [Streptococcus pneumoniae 2080913]
gi|421242591|ref|ZP_15699114.1| RNase3 domain protein [Streptococcus pneumoniae 2081074]
gi|421244440|ref|ZP_15700944.1| RNase3 domain protein [Streptococcus pneumoniae 2081685]
gi|421246847|ref|ZP_15703335.1| RNase3 domain protein [Streptococcus pneumoniae 2082170]
gi|421248916|ref|ZP_15705379.1| RNase3 domain protein [Streptococcus pneumoniae 2082239]
gi|421265628|ref|ZP_15716512.1| RNase3 domain protein [Streptococcus pneumoniae SPAR27]
gi|421267814|ref|ZP_15718686.1| RNase3 domain protein [Streptococcus pneumoniae SPAR95]
gi|421270020|ref|ZP_15720877.1| RNase3 domain protein [Streptococcus pneumoniae SPAR48]
gi|421274517|ref|ZP_15725349.1| hypothetical protein SPAR117_0522 [Streptococcus pneumoniae
GA52612]
gi|421282800|ref|ZP_15733589.1| hypothetical protein SPAR151_0560 [Streptococcus pneumoniae
GA04216]
gi|421285659|ref|ZP_15736436.1| hypothetical protein SPAR162_0539 [Streptococcus pneumoniae
GA60190]
gi|421287095|ref|ZP_15737861.1| hypothetical protein SPAR163_0565 [Streptococcus pneumoniae
GA58771]
gi|421289237|ref|ZP_15739989.1| hypothetical protein SPAR157_0576 [Streptococcus pneumoniae
GA54354]
gi|421291399|ref|ZP_15742140.1| hypothetical protein SPAR159_0582 [Streptococcus pneumoniae
GA56348]
gi|421297209|ref|ZP_15747912.1| hypothetical protein SPAR160_1980 [Streptococcus pneumoniae
GA58581]
gi|421298064|ref|ZP_15748754.1| hypothetical protein SPAR161_0573 [Streptococcus pneumoniae
GA60080]
gi|421302414|ref|ZP_15753079.1| hypothetical protein SPAR47_0516 [Streptococcus pneumoniae GA17484]
gi|421304557|ref|ZP_15755214.1| hypothetical protein SPAR169_0613 [Streptococcus pneumoniae
GA62331]
gi|421311344|ref|ZP_15761953.1| hypothetical protein SPAR167_0654 [Streptococcus pneumoniae
GA58981]
gi|421313530|ref|ZP_15764121.1| hypothetical protein SPAR100_0533 [Streptococcus pneumoniae
GA47562]
gi|444388006|ref|ZP_21185999.1| RNase3 domain protein [Streptococcus pneumoniae PCS125219]
gi|444390276|ref|ZP_21188191.1| RNase3 domain protein [Streptococcus pneumoniae PCS70012]
gi|444392684|ref|ZP_21190384.1| RNase3 domain protein [Streptococcus pneumoniae PCS81218]
gi|444394086|ref|ZP_21191639.1| RNase3 domain protein [Streptococcus pneumoniae PNI0002]
gi|444397040|ref|ZP_21194527.1| RNase3 domain protein [Streptococcus pneumoniae PNI0006]
gi|444399900|ref|ZP_21197330.1| RNase3 domain protein [Streptococcus pneumoniae PNI0007]
gi|444401885|ref|ZP_21199064.1| RNase3 domain protein [Streptococcus pneumoniae PNI0008]
gi|444406214|ref|ZP_21202999.1| RNase3 domain protein [Streptococcus pneumoniae PNI0009]
gi|444408244|ref|ZP_21204907.1| RNase3 domain protein [Streptococcus pneumoniae PNI0010]
gi|444408966|ref|ZP_21205567.1| RNase3 domain protein [Streptococcus pneumoniae PNI0076]
gi|444412068|ref|ZP_21208394.1| RNase3 domain protein [Streptococcus pneumoniae PNI0153]
gi|444416081|ref|ZP_21212286.1| RNase3 domain protein [Streptococcus pneumoniae PNI0199]
gi|444418691|ref|ZP_21214655.1| RNase3 domain protein [Streptococcus pneumoniae PNI0360]
gi|444421330|ref|ZP_21217068.1| RNase3 domain protein [Streptococcus pneumoniae PNI0427]
gi|444423037|ref|ZP_21218668.1| RNase3 domain protein [Streptococcus pneumoniae PNI0446]
gi|81450051|sp|Q8DQS7.1|MRNC_STRR6 RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|14972067|gb|AAK74745.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15458094|gb|AAK99324.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116075947|gb|ABJ53667.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
gi|147755911|gb|EDK62955.1| hypothetical protein CGSSp11BS70_03671 [Streptococcus pneumoniae
SP11-BS70]
gi|147759587|gb|EDK66578.1| hypothetical protein CGSSp14BS69_01484 [Streptococcus pneumoniae
SP14-BS69]
gi|147762644|gb|EDK69604.1| hypothetical protein CGSSp18BS74_09065 [Streptococcus pneumoniae
SP18-BS74]
gi|147765269|gb|EDK72198.1| fructose-bisphosphate aldolase [Streptococcus pneumoniae SP19-BS75]
gi|147924121|gb|EDK75233.1| hypothetical protein CGSSp3BS71_07569 [Streptococcus pneumoniae
SP3-BS71]
gi|147925453|gb|EDK76530.1| hypothetical protein CGSSp6BS73_02245 [Streptococcus pneumoniae
SP6-BS73]
gi|147928923|gb|EDK79935.1| fructose-bisphosphate aldolase [Streptococcus pneumoniae SP9-BS68]
gi|147930250|gb|EDK81235.1| hypothetical protein CGSSp23BS72_06799 [Streptococcus pneumoniae
SP23-BS72]
gi|168996723|gb|ACA37335.1| ribonuclease III family protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172043684|gb|EDT51730.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628861|gb|ACB89809.1| hypothetical protein SPCG_0557 [Streptococcus pneumoniae CGSP14]
gi|183571263|gb|EDT91791.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC1087-00]
gi|183574816|gb|EDT95344.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577723|gb|EDT98251.1| ribonuclease III family protein [Streptococcus pneumoniae MLV-016]
gi|194357686|gb|ACF56134.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
gi|225721672|gb|ACO17526.1| ribonuclease III family protein [Streptococcus pneumoniae 70585]
gi|225725260|gb|ACO21112.1| ribonuclease III family protein [Streptococcus pneumoniae P1031]
gi|225727897|gb|ACO23748.1| ribonuclease III family protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237982|gb|ADI69113.1| ribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|301799644|emb|CBW32202.1| putative ribomuclease [Streptococcus pneumoniae OXC141]
gi|301801465|emb|CBW34157.1| putative ribomuclease [Streptococcus pneumoniae INV200]
gi|302599097|gb|EFL66122.1| hypothetical protein CGSSpBS455_00501 [Streptococcus pneumoniae
BS455]
gi|302637405|gb|EFL67892.1| hypothetical protein CGSSp14BS292_08030 [Streptococcus pneumoniae
SP14-BS292]
gi|302638782|gb|EFL69244.1| hypothetical protein CGSSpBS293_01365 [Streptococcus pneumoniae
SP-BS293]
gi|302642147|gb|EFL72497.1| hypothetical protein CGSSpBS458_02274 [Streptococcus pneumoniae
BS458]
gi|302644511|gb|EFL74762.1| hypothetical protein CGSSpBS457_00660 [Streptococcus pneumoniae
BS457]
gi|302646341|gb|EFL76567.1| hypothetical protein CGSSpBS397_04997 [Streptococcus pneumoniae
BS397]
gi|306408749|gb|ADM84176.1| hypothetical protein SPAP_0583 [Streptococcus pneumoniae AP200]
gi|306483857|gb|ADM90726.1| ribonuclease III family protein [Streptococcus pneumoniae 670-6B]
gi|327390331|gb|EGE88672.1| hypothetical protein SPAR5_0573 [Streptococcus pneumoniae GA04375]
gi|332076429|gb|EGI86892.1| hypothetical protein SPAR68_0616 [Streptococcus pneumoniae GA41301]
gi|332077025|gb|EGI87487.1| hypothetical protein SPAR148_0558 [Streptococcus pneumoniae
GA17545]
gi|332202473|gb|EGJ16542.1| hypothetical protein SPAR69_0584 [Streptococcus pneumoniae GA41317]
gi|332203757|gb|EGJ17824.1| hypothetical protein SPAR93_0628 [Streptococcus pneumoniae GA47368]
gi|353750860|gb|EHD31496.1| hypothetical protein SPAR98_0631 [Streptococcus pneumoniae GA47502]
gi|353757921|gb|EHD38514.1| hypothetical protein SPAR81_0569 [Streptococcus pneumoniae GA44288]
gi|353759921|gb|EHD40503.1| hypothetical protein SPAR90_0588 [Streptococcus pneumoniae GA47281]
gi|353766596|gb|EHD47136.1| hypothetical protein SPAR84_0592 [Streptococcus pneumoniae GA44452]
gi|353767014|gb|EHD47553.1| hypothetical protein SPAR110_0570 [Streptococcus pneumoniae
GA49138]
gi|353772474|gb|EHD52980.1| hypothetical protein SPAR40_0622 [Streptococcus pneumoniae GA16531]
gi|353773339|gb|EHD53838.1| hypothetical protein SPAR128_1046 [Streptococcus pneumoniae
7286-06]
gi|353778006|gb|EHD58478.1| hypothetical protein SPAR143_0571 [Streptococcus pneumoniae NP070]
gi|353780444|gb|EHD60901.1| hypothetical protein SPAR70_0506 [Streptococcus pneumoniae GA41410]
gi|353784854|gb|EHD65274.1| hypothetical protein SPAR113_0634 [Streptococcus pneumoniae
GA49447]
gi|353785596|gb|EHD66014.1| hypothetical protein SPAR72_0645 [Streptococcus pneumoniae GA41538]
gi|353792126|gb|EHD72499.1| hypothetical protein SPAR54_0578 [Streptococcus pneumoniae GA18523]
gi|353793511|gb|EHD73870.1| hypothetical protein SPAR80_0550 [Streptococcus pneumoniae GA44194]
gi|353803055|gb|EHD83347.1| hypothetical protein SPAR14_0550 [Streptococcus pneumoniae GA07643]
gi|353805459|gb|EHD85733.1| hypothetical protein SPAR30_0586 [Streptococcus pneumoniae GA13455]
gi|353808099|gb|EHD88368.1| hypothetical protein SPAR22_1013 [Streptococcus pneumoniae GA11304]
gi|353809156|gb|EHD89416.1| hypothetical protein SPAR31_0597 [Streptococcus pneumoniae GA13494]
gi|353812722|gb|EHD92955.1| hypothetical protein SPAR34_0535 [Streptococcus pneumoniae GA13856]
gi|353816685|gb|EHD96894.1| hypothetical protein SPAR32_0582 [Streptococcus pneumoniae GA13637]
gi|353817291|gb|EHD97495.1| hypothetical protein SPAR37_0577 [Streptococcus pneumoniae GA14798]
gi|353818991|gb|EHD99189.1| hypothetical protein SPAR38_0582 [Streptococcus pneumoniae GA16121]
gi|353822930|gb|EHE03105.1| hypothetical protein SPAR39_0595 [Streptococcus pneumoniae GA16242]
gi|353824899|gb|EHE05066.1| hypothetical protein SPAR41_0655 [Streptococcus pneumoniae GA16833]
gi|353825112|gb|EHE05278.1| hypothetical protein SPAR43_0576 [Streptococcus pneumoniae GA17227]
gi|353829813|gb|EHE09943.1| hypothetical protein SPAR52_0635 [Streptococcus pneumoniae GA17971]
gi|353831229|gb|EHE11358.1| hypothetical protein SPAR49_0630 [Streptococcus pneumoniae GA17328]
gi|353832272|gb|EHE12390.1| hypothetical protein SPAR45_0579 [Streptococcus pneumoniae GA17371]
gi|353836989|gb|EHE17075.1| hypothetical protein SPAR58_0598 [Streptococcus pneumoniae GA19451]
gi|353843967|gb|EHE24011.1| hypothetical protein SPAR71_0641 [Streptococcus pneumoniae GA41437]
gi|353846288|gb|EHE26321.1| hypothetical protein SPAR74_0565 [Streptococcus pneumoniae GA41688]
gi|353850439|gb|EHE30443.1| hypothetical protein SPAR78_0604 [Streptococcus pneumoniae GA43380]
gi|353851968|gb|EHE31958.1| hypothetical protein SPAR91_0559 [Streptococcus pneumoniae GA47283]
gi|353853191|gb|EHE33174.1| hypothetical protein SPAR92_0572 [Streptococcus pneumoniae GA47360]
gi|353855965|gb|EHE35934.1| hypothetical protein SPAR94_0577 [Streptococcus pneumoniae GA47373]
gi|353859972|gb|EHE39919.1| hypothetical protein SPAR119_0530 [Streptococcus pneumoniae
GA47439]
gi|353862332|gb|EHE42265.1| hypothetical protein SPAR103_0998 [Streptococcus pneumoniae
GA47688]
gi|353866424|gb|EHE46326.1| hypothetical protein SPAR109_0551 [Streptococcus pneumoniae
GA47976]
gi|353868549|gb|EHE48435.1| hypothetical protein SPAR115_0582 [Streptococcus pneumoniae
GA52306]
gi|353876535|gb|EHE56384.1| hypothetical protein SPAR145_0618 [Streptococcus pneumoniae NP127]
gi|353877396|gb|EHE57239.1| hypothetical protein SPAR104_0450 [Streptococcus pneumoniae
GA47751]
gi|353880153|gb|EHE59969.1| hypothetical protein SPAR127_0576 [Streptococcus pneumoniae
5185-06]
gi|353882341|gb|EHE62152.1| hypothetical protein SPAR141_0559 [Streptococcus pneumoniae NP112]
gi|353883570|gb|EHE63376.1| hypothetical protein SPAR135_0574 [Streptococcus pneumoniae
3063-00]
gi|353887988|gb|EHE67764.1| hypothetical protein SPAR13_0583 [Streptococcus pneumoniae GA07228]
gi|353890471|gb|EHE70234.1| hypothetical protein SPAR136_0580 [Streptococcus pneumoniae
EU-NP01]
gi|353893908|gb|EHE73653.1| hypothetical protein SPAR59_0521 [Streptococcus pneumoniae GA19690]
gi|353894600|gb|EHE74341.1| hypothetical protein SPAR146_0629 [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353905754|gb|EHE81170.1| hypothetical protein SPAR28_0550 [Streptococcus pneumoniae GA13338]
gi|379137515|gb|AFC94306.1| ribonuclease III family protein [Streptococcus pneumoniae ST556]
gi|379531796|gb|EHY97030.1| hypothetical protein SPAR1_1377 [Streptococcus pneumoniae GA02254]
gi|379534624|gb|EHY99834.1| hypothetical protein SPAR3_0631 [Streptococcus pneumoniae GA02714]
gi|379540272|gb|EHZ05445.1| hypothetical protein SPAR6_0497 [Streptococcus pneumoniae GA13499]
gi|379540459|gb|EHZ05631.1| RNase3 domain protein [Streptococcus pneumoniae GA05245]
gi|379545038|gb|EHZ10180.1| hypothetical protein SPAR8_0539 [Streptococcus pneumoniae GA05248]
gi|379545288|gb|EHZ10427.1| hypothetical protein SPAR15_0517 [Streptococcus pneumoniae GA07914]
gi|379552127|gb|EHZ17217.1| hypothetical protein SPAR25_0550 [Streptococcus pneumoniae GA11856]
gi|379559274|gb|EHZ24303.1| RNase3 domain protein [Streptococcus pneumoniae GA13723]
gi|379559742|gb|EHZ24769.1| RNase3 domain protein [Streptococcus pneumoniae GA14373]
gi|379562482|gb|EHZ27496.1| hypothetical protein SPAR36_0577 [Streptococcus pneumoniae GA14688]
gi|379566646|gb|EHZ31633.1| hypothetical protein SPAR53_0589 [Streptococcus pneumoniae GA18068]
gi|379567431|gb|EHZ32416.1| RNase3 domain protein [Streptococcus pneumoniae GA17719]
gi|379568063|gb|EHZ33045.1| RNase3 domain protein [Streptococcus pneumoniae GA17457]
gi|379571912|gb|EHZ36869.1| hypothetical protein SPAR60_0560 [Streptococcus pneumoniae GA19923]
gi|379573102|gb|EHZ38058.1| hypothetical protein SPAR57_0512 [Streptococcus pneumoniae GA19101]
gi|379574697|gb|EHZ39635.1| RNase3 domain protein [Streptococcus pneumoniae GA40028]
gi|379581300|gb|EHZ46185.1| hypothetical protein SPAR65_0539 [Streptococcus pneumoniae GA40563]
gi|379588988|gb|EHZ53828.1| hypothetical protein SPAR79_0586 [Streptococcus pneumoniae GA44128]
gi|379589579|gb|EHZ54418.1| hypothetical protein SPAR76_0582 [Streptococcus pneumoniae GA43264]
gi|379590572|gb|EHZ55410.1| hypothetical protein SPAR83_0593 [Streptococcus pneumoniae GA44386]
gi|379594783|gb|EHZ59592.1| hypothetical protein SPAR89_0561 [Streptococcus pneumoniae GA47210]
gi|379595834|gb|EHZ60641.1| hypothetical protein SPAR88_0526 [Streptococcus pneumoniae GA47179]
gi|379597261|gb|EHZ62064.1| hypothetical protein SPAR97_0530 [Streptococcus pneumoniae GA47461]
gi|379601710|gb|EHZ66482.1| hypothetical protein SPAR102_0588 [Streptococcus pneumoniae
GA47628]
gi|379602194|gb|EHZ66965.1| hypothetical protein SPAR101_0514 [Streptococcus pneumoniae
GA47597]
gi|379607467|gb|EHZ72213.1| hypothetical protein SPAR111_0583 [Streptococcus pneumoniae
GA49194]
gi|379608981|gb|EHZ73723.1| RNase3 domain protein [Streptococcus pneumoniae GA47794]
gi|379609336|gb|EHZ74076.1| hypothetical protein SPAR105_0503 [Streptococcus pneumoniae
GA47760]
gi|379613879|gb|EHZ78589.1| hypothetical protein SPAR129_0568 [Streptococcus pneumoniae
7879-04]
gi|379617149|gb|EHZ81842.1| hypothetical protein SPAR126_0549 [Streptococcus pneumoniae
8190-05]
gi|379618220|gb|EHZ82895.1| hypothetical protein SPAR130_0561 [Streptococcus pneumoniae
5652-06]
gi|379620542|gb|EHZ85197.1| hypothetical protein SPAR131_0569 [Streptococcus pneumoniae
7533-05]
gi|379624259|gb|EHZ88892.1| hypothetical protein SPAR132_1281 [Streptococcus pneumoniae
4075-00]
gi|379624483|gb|EHZ89114.1| hypothetical protein SPAR137_0560 [Streptococcus pneumoniae
EU-NP02]
gi|379627294|gb|EHZ91906.1| hypothetical protein SPAR138_0566 [Streptococcus pneumoniae
EU-NP03]
gi|379630054|gb|EHZ94645.1| hypothetical protein SPAR139_0679 [Streptococcus pneumoniae
EU-NP04]
gi|379633425|gb|EHZ97994.1| hypothetical protein SPAR142_0896 [Streptococcus pneumoniae NP141]
gi|379636478|gb|EIA01036.1| RNase3 domain protein [Streptococcus pneumoniae GA05578]
gi|379638656|gb|EIA03201.1| hypothetical protein SPAR152_0526 [Streptococcus pneumoniae
England14-9]
gi|379640295|gb|EIA04834.1| RNase3 domain protein [Streptococcus pneumoniae GA02506]
gi|395574934|gb|EJG35506.1| RNase3 domain protein [Streptococcus pneumoniae 2070035]
gi|395576905|gb|EJG37459.1| RNase3 domain protein [Streptococcus pneumoniae 2070005]
gi|395577693|gb|EJG38232.1| RNase3 domain protein [Streptococcus pneumoniae 2090008]
gi|395581019|gb|EJG41492.1| RNase3 domain protein [Streptococcus pneumoniae 2070108]
gi|395582362|gb|EJG42824.1| RNase3 domain protein [Streptococcus pneumoniae 2070109]
gi|395589454|gb|EJG49772.1| RNase3 domain protein [Streptococcus pneumoniae 2070531]
gi|395589875|gb|EJG50190.1| RNase3 domain protein [Streptococcus pneumoniae 2070425]
gi|395591786|gb|EJG52081.1| RNase3 domain protein [Streptococcus pneumoniae 2070768]
gi|395596803|gb|EJG57015.1| RNase3 domain protein [Streptococcus pneumoniae 2080076]
gi|395597835|gb|EJG58041.1| RNase3 domain protein [Streptococcus pneumoniae 2072047]
gi|395598234|gb|EJG58439.1| RNase3 domain protein [Streptococcus pneumoniae 2061376]
gi|395602511|gb|EJG62653.1| RNase3 domain protein [Streptococcus pneumoniae 2061617]
gi|395603595|gb|EJG63731.1| RNase3 domain protein [Streptococcus pneumoniae 2071247]
gi|395604691|gb|EJG64823.1| RNase3 domain protein [Streptococcus pneumoniae 2071004]
gi|395609731|gb|EJG69816.1| RNase3 domain protein [Streptococcus pneumoniae 2080913]
gi|395610361|gb|EJG70439.1| RNase3 domain protein [Streptococcus pneumoniae 2081685]
gi|395610499|gb|EJG70576.1| RNase3 domain protein [Streptococcus pneumoniae 2081074]
gi|395615003|gb|EJG75020.1| RNase3 domain protein [Streptococcus pneumoniae 2082170]
gi|395615545|gb|EJG75561.1| RNase3 domain protein [Streptococcus pneumoniae 2082239]
gi|395869650|gb|EJG80765.1| RNase3 domain protein [Streptococcus pneumoniae SPAR27]
gi|395870672|gb|EJG81785.1| RNase3 domain protein [Streptococcus pneumoniae SPAR48]
gi|395871238|gb|EJG82344.1| RNase3 domain protein [Streptococcus pneumoniae SPAR95]
gi|395875245|gb|EJG86326.1| hypothetical protein SPAR117_0522 [Streptococcus pneumoniae
GA52612]
gi|395882666|gb|EJG93710.1| hypothetical protein SPAR151_0560 [Streptococcus pneumoniae
GA04216]
gi|395887638|gb|EJG98653.1| hypothetical protein SPAR162_0539 [Streptococcus pneumoniae
GA60190]
gi|395889504|gb|EJH00511.1| hypothetical protein SPAR163_0565 [Streptococcus pneumoniae
GA58771]
gi|395890497|gb|EJH01503.1| hypothetical protein SPAR157_0576 [Streptococcus pneumoniae
GA54354]
gi|395892783|gb|EJH03773.1| hypothetical protein SPAR160_1980 [Streptococcus pneumoniae
GA58581]
gi|395895693|gb|EJH06666.1| hypothetical protein SPAR159_0582 [Streptococcus pneumoniae
GA56348]
gi|395903228|gb|EJH14160.1| hypothetical protein SPAR47_0516 [Streptococcus pneumoniae GA17484]
gi|395903567|gb|EJH14495.1| hypothetical protein SPAR161_0573 [Streptococcus pneumoniae
GA60080]
gi|395906101|gb|EJH17004.1| hypothetical protein SPAR169_0613 [Streptococcus pneumoniae
GA62331]
gi|395912571|gb|EJH23429.1| hypothetical protein SPAR167_0654 [Streptococcus pneumoniae
GA58981]
gi|395914923|gb|EJH25766.1| hypothetical protein SPAR100_0533 [Streptococcus pneumoniae
GA47562]
gi|406368998|gb|AFS42688.1| cysteine--tRNA ligase [Streptococcus pneumoniae gamPNI0373]
gi|429317483|emb|CCP37262.1| putative ribomuclease [Streptococcus pneumoniae SPN034156]
gi|429319027|emb|CCP32256.1| putative ribomuclease [Streptococcus pneumoniae SPN034183]
gi|429320841|emb|CCP34229.1| putative ribomuclease [Streptococcus pneumoniae SPN994039]
gi|429322661|emb|CCP30270.1| putative ribomuclease [Streptococcus pneumoniae SPN994038]
gi|444250767|gb|ELU57243.1| RNase3 domain protein [Streptococcus pneumoniae PCS125219]
gi|444256739|gb|ELU63077.1| RNase3 domain protein [Streptococcus pneumoniae PCS70012]
gi|444261153|gb|ELU67457.1| RNase3 domain protein [Streptococcus pneumoniae PNI0002]
gi|444262271|gb|ELU68569.1| RNase3 domain protein [Streptococcus pneumoniae PNI0006]
gi|444262984|gb|ELU69225.1| RNase3 domain protein [Streptococcus pneumoniae PCS81218]
gi|444267356|gb|ELU73261.1| RNase3 domain protein [Streptococcus pneumoniae PNI0008]
gi|444267838|gb|ELU73725.1| RNase3 domain protein [Streptococcus pneumoniae PNI0007]
gi|444269596|gb|ELU75402.1| RNase3 domain protein [Streptococcus pneumoniae PNI0009]
gi|444270215|gb|ELU75999.1| RNase3 domain protein [Streptococcus pneumoniae PNI0010]
gi|444275400|gb|ELU81027.1| RNase3 domain protein [Streptococcus pneumoniae PNI0153]
gi|444278259|gb|ELU83722.1| RNase3 domain protein [Streptococcus pneumoniae PNI0199]
gi|444280415|gb|ELU85782.1| RNase3 domain protein [Streptococcus pneumoniae PNI0076]
gi|444280774|gb|ELU86127.1| RNase3 domain protein [Streptococcus pneumoniae PNI0360]
gi|444282715|gb|ELU87958.1| RNase3 domain protein [Streptococcus pneumoniae PNI0427]
gi|444287642|gb|ELU92559.1| RNase3 domain protein [Streptococcus pneumoniae PNI0446]
Length = 128
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>gi|168488280|ref|ZP_02712479.1| ribonuclease III family protein [Streptococcus pneumoniae SP195]
gi|168492752|ref|ZP_02716895.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC3059-06]
gi|221231419|ref|YP_002510571.1| ribomuclease [Streptococcus pneumoniae ATCC 700669]
gi|225854127|ref|YP_002735639.1| ribonuclease III family protein [Streptococcus pneumoniae JJA]
gi|415697463|ref|ZP_11456732.1| RNase3 domain protein [Streptococcus pneumoniae 459-5]
gi|415749018|ref|ZP_11476962.1| RNase3 domain protein [Streptococcus pneumoniae SV35]
gi|415751625|ref|ZP_11478811.1| RNase3 domain protein [Streptococcus pneumoniae SV36]
gi|417678558|ref|ZP_12327956.1| hypothetical protein SPAR50_0584 [Streptococcus pneumoniae GA17570]
gi|418073448|ref|ZP_12710708.1| hypothetical protein SPAR19_0592 [Streptococcus pneumoniae GA11184]
gi|418078097|ref|ZP_12715320.1| hypothetical protein SPAR123_0537 [Streptococcus pneumoniae
4027-06]
gi|418080982|ref|ZP_12718192.1| hypothetical protein SPAR121_1278 [Streptococcus pneumoniae
6735-05]
gi|418097970|ref|ZP_12735070.1| hypothetical protein SPAR122_0547 [Streptococcus pneumoniae
6901-05]
gi|418104644|ref|ZP_12741704.1| hypothetical protein SPAR85_0568 [Streptococcus pneumoniae GA44500]
gi|418114667|ref|ZP_12751655.1| hypothetical protein SPAR125_1066 [Streptococcus pneumoniae
5787-06]
gi|418116329|ref|ZP_12753303.1| hypothetical protein SPAR124_0541 [Streptococcus pneumoniae
6963-05]
gi|418122874|ref|ZP_12759809.1| hypothetical protein SPAR82_0539 [Streptococcus pneumoniae GA44378]
gi|418125210|ref|ZP_12762127.1| hypothetical protein SPAR86_0579 [Streptococcus pneumoniae GA44511]
gi|418127461|ref|ZP_12764357.1| hypothetical protein SPAR144_0536 [Streptococcus pneumoniae NP170]
gi|418136630|ref|ZP_12773473.1| hypothetical protein SPAR24_0525 [Streptococcus pneumoniae GA11663]
gi|418172961|ref|ZP_12809575.1| hypothetical protein SPAR67_0562 [Streptococcus pneumoniae GA41277]
gi|418177631|ref|ZP_12814215.1| hypothetical protein SPAR73_0557 [Streptococcus pneumoniae GA41565]
gi|418191037|ref|ZP_12827542.1| hypothetical protein SPAR96_0561 [Streptococcus pneumoniae GA47388]
gi|418213776|ref|ZP_12840511.1| hypothetical protein SPAR118_0568 [Streptococcus pneumoniae
GA54644]
gi|418216051|ref|ZP_12842775.1| hypothetical protein SPAR147_0560 [Streptococcus pneumoniae
Netherlands15B-37]
gi|418233802|ref|ZP_12860382.1| hypothetical protein SPAR17_0576 [Streptococcus pneumoniae GA08780]
gi|419431001|ref|ZP_13971147.1| hypothetical protein SPAR140_0546 [Streptococcus pneumoniae
EU-NP05]
gi|419433259|ref|ZP_13973378.1| hypothetical protein SPAR63_0619 [Streptococcus pneumoniae GA40183]
gi|419464280|ref|ZP_14004173.1| hypothetical protein SPAR4_0586 [Streptococcus pneumoniae GA04175]
gi|419468476|ref|ZP_14008347.1| hypothetical protein SPAR9_0544 [Streptococcus pneumoniae GA06083]
gi|419472658|ref|ZP_14012511.1| hypothetical protein SPAR29_0526 [Streptococcus pneumoniae GA13430]
gi|419483835|ref|ZP_14023611.1| hypothetical protein SPAR75_0564 [Streptococcus pneumoniae GA43257]
gi|419497543|ref|ZP_14037251.1| hypothetical protein SPAR99_1104 [Streptococcus pneumoniae GA47522]
gi|419507679|ref|ZP_14047333.1| hypothetical protein SPAR114_0564 [Streptococcus pneumoniae
GA49542]
gi|421278377|ref|ZP_15729187.1| RNase3 domain protein [Streptococcus pneumoniae GA17301]
gi|421280583|ref|ZP_15731382.1| hypothetical protein SPAR155_0530 [Streptococcus pneumoniae
GA04672]
gi|421293819|ref|ZP_15744543.1| hypothetical protein SPAR158_0586 [Streptococcus pneumoniae
GA56113]
gi|421300460|ref|ZP_15751131.1| hypothetical protein SPAR61_0782 [Streptococcus pneumoniae GA19998]
gi|421309031|ref|ZP_15759660.1| hypothetical protein SPAR168_0543 [Streptococcus pneumoniae
GA62681]
gi|183573070|gb|EDT93598.1| ribonuclease III family protein [Streptococcus pneumoniae SP195]
gi|183576995|gb|EDT97523.1| ribonuclease III family protein [Streptococcus pneumoniae
CDC3059-06]
gi|220673879|emb|CAR68384.1| putative ribomuclease [Streptococcus pneumoniae ATCC 700669]
gi|225723430|gb|ACO19283.1| ribonuclease III family protein [Streptococcus pneumoniae JJA]
gi|332074403|gb|EGI84879.1| hypothetical protein SPAR50_0584 [Streptococcus pneumoniae GA17570]
gi|353747288|gb|EHD27944.1| hypothetical protein SPAR123_0537 [Streptococcus pneumoniae
4027-06]
gi|353751025|gb|EHD31658.1| hypothetical protein SPAR19_0592 [Streptococcus pneumoniae GA11184]
gi|353751721|gb|EHD32352.1| hypothetical protein SPAR121_1278 [Streptococcus pneumoniae
6735-05]
gi|353770335|gb|EHD50848.1| hypothetical protein SPAR122_0547 [Streptococcus pneumoniae
6901-05]
gi|353779078|gb|EHD59544.1| hypothetical protein SPAR85_0568 [Streptococcus pneumoniae GA44500]
gi|353786180|gb|EHD66593.1| hypothetical protein SPAR125_1066 [Streptococcus pneumoniae
5787-06]
gi|353790167|gb|EHD70550.1| hypothetical protein SPAR124_0541 [Streptococcus pneumoniae
6963-05]
gi|353798347|gb|EHD78677.1| hypothetical protein SPAR82_0539 [Streptococcus pneumoniae GA44378]
gi|353799654|gb|EHD79971.1| hypothetical protein SPAR86_0579 [Streptococcus pneumoniae GA44511]
gi|353799922|gb|EHD80236.1| hypothetical protein SPAR144_0536 [Streptococcus pneumoniae NP170]
gi|353839660|gb|EHE19734.1| hypothetical protein SPAR67_0562 [Streptococcus pneumoniae GA41277]
gi|353844405|gb|EHE24448.1| hypothetical protein SPAR73_0557 [Streptococcus pneumoniae GA41565]
gi|353858636|gb|EHE38596.1| hypothetical protein SPAR96_0561 [Streptococcus pneumoniae GA47388]
gi|353871059|gb|EHE50930.1| hypothetical protein SPAR118_0568 [Streptococcus pneumoniae
GA54644]
gi|353873102|gb|EHE52963.1| hypothetical protein SPAR147_0560 [Streptococcus pneumoniae
Netherlands15B-37]
gi|353889241|gb|EHE69012.1| hypothetical protein SPAR17_0576 [Streptococcus pneumoniae GA08780]
gi|353902558|gb|EHE78086.1| hypothetical protein SPAR24_0525 [Streptococcus pneumoniae GA11663]
gi|379539499|gb|EHZ04678.1| hypothetical protein SPAR4_0586 [Streptococcus pneumoniae GA04175]
gi|379546579|gb|EHZ11717.1| hypothetical protein SPAR9_0544 [Streptococcus pneumoniae GA06083]
gi|379553560|gb|EHZ18644.1| hypothetical protein SPAR29_0526 [Streptococcus pneumoniae GA13430]
gi|379577389|gb|EHZ42308.1| hypothetical protein SPAR63_0619 [Streptococcus pneumoniae GA40183]
gi|379583346|gb|EHZ48223.1| hypothetical protein SPAR75_0564 [Streptococcus pneumoniae GA43257]
gi|379599807|gb|EHZ64589.1| hypothetical protein SPAR99_1104 [Streptococcus pneumoniae GA47522]
gi|379612524|gb|EHZ77241.1| hypothetical protein SPAR114_0564 [Streptococcus pneumoniae
GA49542]
gi|379632245|gb|EHZ96821.1| hypothetical protein SPAR140_0546 [Streptococcus pneumoniae
EU-NP05]
gi|381310445|gb|EIC51274.1| RNase3 domain protein [Streptococcus pneumoniae SV36]
gi|381317312|gb|EIC58037.1| RNase3 domain protein [Streptococcus pneumoniae SV35]
gi|381319416|gb|EIC60125.1| RNase3 domain protein [Streptococcus pneumoniae 459-5]
gi|395881749|gb|EJG92797.1| RNase3 domain protein [Streptococcus pneumoniae GA17301]
gi|395883940|gb|EJG94982.1| hypothetical protein SPAR155_0530 [Streptococcus pneumoniae
GA04672]
gi|395895151|gb|EJH06127.1| hypothetical protein SPAR158_0586 [Streptococcus pneumoniae
GA56113]
gi|395899884|gb|EJH10823.1| hypothetical protein SPAR61_0782 [Streptococcus pneumoniae GA19998]
gi|395911775|gb|EJH22639.1| hypothetical protein SPAR168_0543 [Streptococcus pneumoniae
GA62681]
Length = 128
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>gi|312126939|ref|YP_003991813.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
gi|311776958|gb|ADQ06444.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
Length = 144
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YEL+ R + P L+ Y + VR +Q ++KL + L ER
Sbjct: 22 AYIGDAVYELFVRNKVIAENPNLTPYLYYLKTTMYVRASSQAMAIKKLYEE--LDENERR 79
Query: 181 VVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGSS 239
+V+ G+N A T+T + A + Y A++LE L GYLYL N N +L +
Sbjct: 80 IVKRGRN---AKTKTIPKNAKLSDYKYATALEALIGYLYLENNN------ERLNYILSQV 130
Query: 240 TQMILEEAN 248
Q+I +E N
Sbjct: 131 YQIITKEHN 139
>gi|116074616|ref|ZP_01471877.1| hypothetical protein RS9916_28819 [Synechococcus sp. RS9916]
gi|116067838|gb|EAU73591.1| hypothetical protein RS9916_28819 [Synechococcus sp. RS9916]
Length = 135
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++EL+ R P ++ + V+A V+ + Q A+L++L + L+ +E D
Sbjct: 21 QLAWLGDAVWELHQRLRHCRRPGRADDLHKAVVAEVKADAQAAVLERL--EPLLNDQEID 78
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
+V + + R RR A+VY RA+ ET+ G+L+L N RL +++ +L T
Sbjct: 79 LV---RRGRNRAGRGPRRGEASVYGRATGFETMVGWLFLQNPARLAELLDRLDETE 131
>gi|152973938|ref|YP_001373455.1| hypothetical protein Bcer98_0085 [Bacillus cytotoxicus NVH 391-98]
gi|152022690|gb|ABS20460.1| ribonuclease III [Bacillus cytotoxicus NVH 391-98]
Length = 135
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRHHLLQKGTVRPNQLHRLGTSFVSAKAQAKVVYHLLETNFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E + GY Y L N RLE++++K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEAVIGYHYLLHNRERLEEIVNK 121
>gi|365905411|ref|ZP_09443170.1| ribonuclease III family protein [Lactobacillus versmoldensis KCTC
3814]
Length = 134
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R H L + + E V + Q AL+ ++ +++L+
Sbjct: 7 LNGVTLAYLGDAVYEVFIREHLLAGGTTKVNELQRLAKHFVSAKAQAALINLMVEENFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E + + G+N NT+ K + Y+ ++ E L GYL +T + RL++++
Sbjct: 67 EDEERIYKNGRN-AKKNTKAKNTS-VVTYHMSTGFEALIGYLDITDDKKRLQEIID 120
>gi|139474430|ref|YP_001129146.1| hypothetical protein SpyM51627 [Streptococcus pyogenes str.
Manfredo]
gi|134272677|emb|CAM30948.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
Length = 137
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MTNPVDV----NLINGIALAFEGDAVYSYYVRRHLIFQGKTKPSQLHRLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL- 217
Q L+Q +L L+ +E D+ R G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAQLLTEKEEDIYRRGRN---TNSHTKAKNADVVTYRMSTGFEAIMGYLD 110
Query: 218 YLTNANRLEDVM 229
+ RLE+++
Sbjct: 111 MMGQKERLEELI 122
>gi|345858482|ref|ZP_08810875.1| hypothetical protein DOT_2262 [Desulfosporosinus sp. OT]
gi|344328501|gb|EGW39886.1| hypothetical protein DOT_2262 [Desulfosporosinus sp. OT]
Length = 134
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L ++E + + ++ VR TQ LL+ LL D L
Sbjct: 7 MNALTLAYLGDAVYELWVRTHLLELGYEKVKELHKQAISYVRASTQAQLLRVLLPD--LD 64
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
E+ VV G+N + + Y A++ E+L GY ++
Sbjct: 65 EVEQRVVLRGRNAKGGHPKN---VDVVTYRHATAFESLVGYWHM 105
>gi|386587008|ref|YP_006083410.1| hypothetical protein SSUD12_1894 [Streptococcus suis D12]
gi|353739154|gb|AER20162.1| hypothetical protein SSUD12_1894 [Streptococcus suis D12]
Length = 132
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q +L+ LL
Sbjct: 8 NLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHGEANKYVSAKAQASLISALLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 68 LTEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQMERLDELVG 123
>gi|418968058|ref|ZP_13519686.1| RNase3 domain protein [Streptococcus mitis SK616]
gi|383341348|gb|EID19608.1| RNase3 domain protein [Streptococcus mitis SK616]
Length = 128
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQVL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GY+++T N RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYIHMTENLERLESLIS 120
>gi|389857436|ref|YP_006359679.1| hypothetical protein SSUST1_1814 [Streptococcus suis ST1]
gi|353741154|gb|AER22161.1| hypothetical protein SSUST1_1814 [Streptococcus suis ST1]
Length = 132
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ LL
Sbjct: 8 NLINGIALAFEGDAVYSMYVRRHLIFKGLTKPNKLHGEANKYVSAKAQAGLISALLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 68 LTEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQMERLDELVG 123
>gi|339624509|ref|ZP_08660298.1| ribonuclease III [Fructobacillus fructosus KCTC 3544]
Length = 139
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N SLAYIGD IYE+ R H + L+ + + + V + A+ + +D YL+
Sbjct: 9 MNGLSLAYIGDAIYEIKVRTHLVSTGLTKVNDLQKKSRHYVSAKAHAAIFNLMRDDHYLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
EE + G+N A + TK + Y ++ +E + GYLYL+ + RL+ +M
Sbjct: 69 EEELHYFKRGRN---AKSYTKAKNTNVVAYRISTGIEAMVGYLYLSGQSERLDQMM 121
>gi|406671564|ref|ZP_11078803.1| hypothetical protein HMPREF9706_01063 [Facklamia hominis CCUG
36813]
gi|405580814|gb|EKB54873.1| hypothetical protein HMPREF9706_01063 [Facklamia hominis CCUG
36813]
Length = 147
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 6/130 (4%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLN- 170
P ++ N A+LAYIGD +YEL R + + + + + V Q ++ LN
Sbjct: 15 PFTLLNGAALAYIGDAVYELAVREYVVKQGKTKVHRLHQAAVKYVAATAQAQVINSWLNQ 74
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+ +L+ E ++ + G+N NT+ K A A Y+R++ E L G+L+LTN + R + ++
Sbjct: 75 EDFLTQAEIEIFKRGRN-HKINTKAK-NASMADYSRSTGFEALIGWLHLTNQDERCQKLI 132
Query: 230 -SKLGFTNGS 238
S + F N S
Sbjct: 133 DSSIKFINKS 142
>gi|188584814|ref|YP_001916359.1| ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349501|gb|ACB83771.1| ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 141
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 99 GYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVR 157
+E+ + K G+ F+ SLAY+GD +YELY R P S+ + + +V
Sbjct: 3 AFEKTIEQKTKTGQ----FSPQSLAYLGDAVYELYVRLQSTATPYNSVSNLHENTVRLVS 58
Query: 158 CETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL 217
TQ LL K+ L+ EE+ +VR GKN R Y A+ E L GYL
Sbjct: 59 APTQAVLLDKIYPK--LTKEEQAIVRRGKNAKVHQPPKGVRYYE--YRLATGFEALVGYL 114
Query: 218 YLTN-ANRLEDVM 229
YL +R+E+++
Sbjct: 115 YLKEREDRIEELL 127
>gi|296111486|ref|YP_003621868.1| hypothetical protein LKI_06800 [Leuconostoc kimchii IMSNU 11154]
gi|339491245|ref|YP_004705750.1| hypothetical protein LGMK_05345 [Leuconostoc sp. C2]
gi|295833018|gb|ADG40899.1| hypothetical protein LKI_06800 [Leuconostoc kimchii IMSNU 11154]
gi|338852917|gb|AEJ31127.1| hypothetical protein LGMK_05345 [Leuconostoc sp. C2]
Length = 135
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + R V + L + ++ D+ L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLLSLGLTKVNDLQKRSKQYVSAKAHATLFEWMMTDNILTE 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
E + G+N A + TK + Y ++ +E L G+LYL+ RL ++MS
Sbjct: 70 GEFIYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGFLYLSGQTKRLSELMS 122
>gi|326693587|ref|ZP_08230592.1| ribonuclease III [Leuconostoc argentinum KCTC 3773]
Length = 135
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + R V + AL ++ D+ L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLLALGLTKVNDLQKRSKHYVSAKAHAALFDLMITDNLLTD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTNA-NRLEDVMS 230
E + G+N A + TK + V Y ++ +E L G+LYL+ +R++ +M+
Sbjct: 70 TELSYFKRGRN---AKSHTKAKNTDVVSYRVSTGVEALFGFLYLSQQHDRIQSLMT 122
>gi|419813837|ref|ZP_14338647.1| RIBOc superfamily protein [Streptococcus sp. GMD2S]
gi|419816883|ref|ZP_14341055.1| RIBOc superfamily protein [Streptococcus sp. GMD4S]
gi|404466647|gb|EKA11965.1| RIBOc superfamily protein [Streptococcus sp. GMD4S]
gi|404472535|gb|EKA16955.1| RIBOc superfamily protein [Streptococcus sp. GMD2S]
Length = 128
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQVL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT + RLE ++S
Sbjct: 66 TEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTEDMERLETLIS 120
>gi|418088994|ref|ZP_12726152.1| hypothetical protein SPAR77_0580 [Streptococcus pneumoniae GA43265]
gi|418134337|ref|ZP_12771195.1| hypothetical protein SPAR23_0608 [Streptococcus pneumoniae GA11426]
gi|353762681|gb|EHD43239.1| hypothetical protein SPAR77_0580 [Streptococcus pneumoniae GA43265]
gi|353902927|gb|EHE78453.1| hypothetical protein SPAR23_0608 [Streptococcus pneumoniae GA11426]
Length = 128
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIVLAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLIS 120
>gi|339450444|ref|ZP_08653814.1| ribonuclease III [Leuconostoc lactis KCTC 3528]
Length = 135
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + R V + AL ++ D+ L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLLSLGLTKVNDLQKRSKHYVSAKAHAALFDLMITDNLLTD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASS-LETLAGYLYLTNA-NRLEDVMS 230
E + G+N A + TK + V R S+ +E L G+LYL+ +R++ +M+
Sbjct: 70 TELSYFKRGRN---AKSHTKAKNTDVVSYRVSTGVEALFGFLYLSQQHDRIQSLMT 122
>gi|251799665|ref|YP_003014396.1| ribonuclease III [Paenibacillus sp. JDR-2]
gi|247547291|gb|ACT04310.1| ribonuclease III [Paenibacillus sp. JDR-2]
Length = 167
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
K + N LAY+GD ++EL R++ + P + +V + Q LL+K
Sbjct: 33 KKTQLINPVVLAYVGDSVFELLVRQYLVSLPNHKSHHLHKEATKIVSAKAQRKLLEKW-- 90
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
L+ EE D+VR G+N S + A A Y +A++LE L GYLY
Sbjct: 91 QPMLTEEEADIVRRGRNTKSGA--PPKNADPADYRQATALECLVGYLY 136
>gi|406577353|ref|ZP_11052965.1| RIBOc superfamily protein [Streptococcus sp. GMD6S]
gi|404460048|gb|EKA06339.1| RIBOc superfamily protein [Streptococcus sp. GMD6S]
Length = 128
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE ++
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTDNMERLETLI 119
>gi|146319577|ref|YP_001199289.1| hypothetical protein SSU05_1923 [Streptococcus suis 05ZYH33]
gi|146321775|ref|YP_001201486.1| hypothetical protein SSU98_1928 [Streptococcus suis 98HAH33]
gi|253752579|ref|YP_003025720.1| hypothetical protein SSUSC84_1739 [Streptococcus suis SC84]
gi|253754405|ref|YP_003027546.1| hypothetical protein SSU1716 [Streptococcus suis P1/7]
gi|253756339|ref|YP_003029479.1| hypothetical protein SSUBM407_1787 [Streptococcus suis BM407]
gi|386578728|ref|YP_006075134.1| hypothetical protein [Streptococcus suis GZ1]
gi|386580799|ref|YP_006077204.1| hypothetical protein SSUJS14_1881 [Streptococcus suis JS14]
gi|386582877|ref|YP_006079281.1| hypothetical protein SSU12_1858 [Streptococcus suis SS12]
gi|386589001|ref|YP_006085402.1| hypothetical protein SSUA7_1743 [Streptococcus suis A7]
gi|403062340|ref|YP_006650556.1| hypothetical protein YYK_08245 [Streptococcus suis S735]
gi|145690383|gb|ABP90889.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
05ZYH33]
gi|145692581|gb|ABP93086.1| Uncharacterized protein conserved in bacteria [Streptococcus suis
98HAH33]
gi|251816868|emb|CAZ52515.1| conserved hypothetical protein [Streptococcus suis SC84]
gi|251818803|emb|CAZ56643.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251820651|emb|CAR47411.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|292559191|gb|ADE32192.1| Uncharacterized conserved protein [Streptococcus suis GZ1]
gi|319758991|gb|ADV70933.1| hypothetical protein SSUJS14_1881 [Streptococcus suis JS14]
gi|353735023|gb|AER16033.1| hypothetical protein SSU12_1858 [Streptococcus suis SS12]
gi|354986162|gb|AER45060.1| hypothetical protein SSUA7_1743 [Streptococcus suis A7]
gi|402809666|gb|AFR01158.1| hypothetical protein YYK_08245 [Streptococcus suis S735]
Length = 132
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ LL
Sbjct: 8 NLINGIALAFEGDAVYSMYIRRHLIFKGLTKPNKLHGEANKYVSAKAQAGLISALLEAQL 67
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 68 LTEKEEEIYKRGRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQMERLDELVG 123
>gi|320547738|ref|ZP_08042022.1| ribonuclease III [Streptococcus equinus ATCC 9812]
gi|379704607|ref|YP_005203066.1| hypothetical protein Sinf_0228 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|320447498|gb|EFW88257.1| ribonuclease III [Streptococcus equinus ATCC 9812]
gi|374681306|gb|AEZ61595.1| hypothetical protein Sinf_0228 [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 133
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD IY Y R+H +F ++ + + + V + Q L+ +L
Sbjct: 7 NLINGIALAFEGDAIYSTYIRKHLIFQGMTKPNQLHRKATMYVSAKAQAMLINMMLEAQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T +RLE+++
Sbjct: 67 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTEQIDRLEELI 121
>gi|373493797|ref|ZP_09584407.1| hypothetical protein HMPREF0380_00045 [Eubacterium infirmum F0142]
gi|371969502|gb|EHO86947.1| hypothetical protein HMPREF0380_00045 [Eubacterium infirmum F0142]
Length = 129
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 9/119 (7%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS----IEEYNNRVMAVVRCETQDALLQKLLNDSY 173
N +LA++GD +YELY R ++ LS + + + + VR E+Q +++++N +
Sbjct: 7 NVTALAFLGDAVYELYI-RSMVYGGLSNGGKADLMHKKAIKYVRAESQARAIKQMMN-GF 64
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
L+ EE +V+ +N + N R AGA Y A++ E L G+L+ + + R+ +MSK
Sbjct: 65 LTEEELGLVKRARNHKTPN--RSRSAGAVEYRLATAFEALVGFLHASGDDERVRAIMSK 121
>gi|417940082|ref|ZP_12583370.1| RNase3 domain protein [Streptococcus oralis SK313]
gi|343388963|gb|EGV01548.1| RNase3 domain protein [Streptococcus oralis SK313]
Length = 128
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT N RLE +++
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTENLERLETLIA 120
>gi|404330430|ref|ZP_10970878.1| ribonuclease III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 140
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ + +LA++GD I E Y R + I + + ++ V + Q A L +L +
Sbjct: 11 ELLGSLTLAFMGDAIIETYVREAVIAASKAKIHRLHEQTISYVSAKAQSAFLHELTAAGF 70
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232
L+ +E+D+VR G+NV + YN ++ E L GYL+ R++++M ++
Sbjct: 71 LTDQEQDIVRKGRNVKPHTV--PKNTDVQTYNFSTGFEALIGYLHFAGRKKRIDEIMKRM 128
>gi|333905716|ref|YP_004479587.1| hypothetical protein STP_1467 [Streptococcus parauberis KCTC 11537]
gi|333120981|gb|AEF25915.1| hypothetical protein STP_1467 [Streptococcus parauberis KCTC 11537]
gi|456370034|gb|EMF48932.1| Ribonuclease III family protein [Streptococcus parauberis
KRS-02109]
Length = 131
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y Y RRH +F + + +++ V Q L+ LL
Sbjct: 7 NLINGIALAFEGDAVYSYYIRRHLIFSGQTKPSQLHHKSTRYVSANAQAMLITALLEAQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ R G+N N+ TK + A Y ++ E L GYL +T RLE++++
Sbjct: 67 LTEKEEDIFRRGRNT---NSHTKAKNANIITYRMSTGFEALMGYLDMTEQKERLEELIA 122
>gi|414156832|ref|ZP_11413133.1| hypothetical protein HMPREF9186_01553 [Streptococcus sp. F0442]
gi|410869825|gb|EKS17785.1| hypothetical protein HMPREF9186_01553 [Streptococcus sp. F0442]
Length = 132
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F ++ + + V Q +L++ +L
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGMTKPNKLHQAATRYVSARAQASLIESMLEQEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RLE++++
Sbjct: 65 LTEKELEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGELARLEELIN 120
>gi|392988350|ref|YP_006486943.1| ribonuclease III family protein [Enterococcus hirae ATCC 9790]
gi|392335770|gb|AFM70052.1| ribonuclease III family protein [Enterococcus hirae ATCC 9790]
Length = 131
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAY+GD IYE+Y R + + + + + V + Q L++++L
Sbjct: 2 KDYTQLNGLALAYVGDAIYEIYIRDYLIEQGATKPNKLHKAATNYVSAKAQAYLIKEMLE 61
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
+ ++ EE R G+N S + + A Y A+ E L GYL+LT RLE+++
Sbjct: 62 EKLMTPEEETFYRRGRNAKSHT--SAKNADVTTYRIATGFEALMGYLHLTKQTERLEELI 119
Query: 230 S----KLGFTNG 237
K+G NG
Sbjct: 120 EWCIQKVGEKNG 131
>gi|329116091|ref|ZP_08244808.1| RNase3 domain protein [Streptococcus parauberis NCFD 2020]
gi|326906496|gb|EGE53410.1| RNase3 domain protein [Streptococcus parauberis NCFD 2020]
gi|457094298|gb|EMG24827.1| Ribonuclease III family protein [Streptococcus parauberis
KRS-02083]
Length = 131
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y Y RRH +F + + +++ V Q L+ LL
Sbjct: 7 NLINGIALAFEGDAVYSYYIRRHLIFSGQTKPSQLHHKSTRYVSANAQAMLITALLEAQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E D+ R G+N N+ TK + A Y ++ E L GYL +T RLE++++
Sbjct: 67 LTEKEEDIFRRGRNT---NSHTKAKNADIITYRMSTGFEALMGYLDMTEQKERLEELIA 122
>gi|322390881|ref|ZP_08064389.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
gi|321142394|gb|EFX37864.1| ribonuclease III [Streptococcus parasanguinis ATCC 903]
Length = 132
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F ++ + + V Q +L++ +L
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGMTKPNKLHQTATRYVSARAQASLIESMLEQEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T RLE++++
Sbjct: 65 LTEKELEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTGELARLEELIN 120
>gi|329767863|ref|ZP_08259377.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341]
gi|328838651|gb|EGF88250.1| hypothetical protein HMPREF0428_01074 [Gemella haemolysans M341]
Length = 143
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 101 ERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCE 159
E+ NP ++ A +LAYIGD IY++ +R + + L I + + V +V
Sbjct: 11 EKNFANPNQM-------QALTLAYIGDSIYDIMSREYVMKNHLGKINDLHKTVSTIVSAR 63
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q + ++ +L++ L+ +E + KN N + A Y A+ LE + GYLYL
Sbjct: 64 AQASFMENILSNGILTEQEEKIYNRAKN--QKNNSKAKNASIMEYKLATGLEAVFGYLYL 121
Query: 220 -TNANRLEDVMS 230
N RLE++ +
Sbjct: 122 EKNFERLEEMFN 133
>gi|406658982|ref|ZP_11067122.1| ribonuclease III [Streptococcus iniae 9117]
gi|405579197|gb|EKB53311.1| ribonuclease III [Streptococcus iniae 9117]
Length = 131
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y Y RRH ++ + + ++ V + Q L++KLL D
Sbjct: 7 NLINGIALAFEGDAVYSYYIRRHLIYSGQTKPSKLHHMATKYVSAKAQANLIEKLLEDQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
L+ +E D+ + G+N S +T+ K Y ++ E + GYL +T RLE++++
Sbjct: 67 LTEKEIDIYKRGRNTKS-HTKAK-NTDVVTYRMSTGFEAIMGYLDMTGEQERLEELIN 122
>gi|342216659|ref|ZP_08709306.1| RNase3 domain protein [Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341587549|gb|EGS30949.1| RNase3 domain protein [Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 140
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YE+ R + L + + + + +V+ + Q ++K+ + L+ +E+D
Sbjct: 26 TLAYLGDAVYEIMVRSYILDDRTKVAQLHRKSAGMVKAQAQAQGVKKI--EDLLTDQEKD 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
+R G+N TR K A Y A+ E+L GYLYLT NRL ++ ++
Sbjct: 84 YLRRGRNA-HPKTRAK-NASMNDYRLATGFESLWGYLYLTGQENRLRELFQRM 134
>gi|374603238|ref|ZP_09676220.1| hypothetical protein PDENDC454_09800 [Paenibacillus dendritiformis
C454]
gi|374391107|gb|EHQ62447.1| hypothetical protein PDENDC454_09800 [Paenibacillus dendritiformis
C454]
Length = 196
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 87 QGV-VANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLS 144
QG+ + NLD + G P PP K + LAY+GD +YE+ R++ + P
Sbjct: 23 QGMDIENLDGAEAGGTWLFPYPP--AKEPKLLPPIVLAYMGDAVYEMAIRQYLISLPNHR 80
Query: 145 IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVY 204
+ + V ++Q L +L L+ EE D+VR G+N SA ++ A Y
Sbjct: 81 PHVLHRQATRYVSAKSQARALGRLT--PLLTPEEADIVRQGRNAKSAVPKS---ANVNEY 135
Query: 205 NRASSLETLAGYLYLTN 221
+A++LE L GYLY +
Sbjct: 136 RQATALEALFGYLYFSG 152
>gi|314937164|ref|ZP_07844511.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
gi|313655783|gb|EFS19528.1| cysteine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
Length = 129
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPNRLHQVSKQYVSAKSQAQTLEVLITK 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ + EERD+VR G+N A + TK + Y ++S LE + G+LYL + N D +
Sbjct: 62 KWFTEEERDIVRRGRN---AKSYTKAKNTDVQTYRKSSGLEAIIGFLYLDHRNERLDAL 117
>gi|342163288|ref|YP_004767927.1| hypothetical protein SPPN_03135 [Streptococcus pseudopneumoniae
IS7493]
gi|383938585|ref|ZP_09991792.1| ribonuclease III domain protein [Streptococcus pseudopneumoniae
SK674]
gi|418970342|ref|ZP_13520549.1| RNase3 domain protein [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|341933170|gb|AEL10067.1| hypothetical protein SPPN_03135 [Streptococcus pseudopneumoniae
IS7493]
gi|383352094|gb|EID29836.1| RNase3 domain protein [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383714522|gb|EID70521.1| ribonuclease III domain protein [Streptococcus pseudopneumoniae
SK674]
Length = 128
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
L+ E+++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++
Sbjct: 65 LTEREKEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLI 119
>gi|357236134|ref|ZP_09123477.1| hypothetical protein STRCR_0097 [Streptococcus criceti HS-6]
gi|356884116|gb|EHI74316.1| hypothetical protein STRCR_0097 [Streptococcus criceti HS-6]
Length = 135
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RRH +F + +R+ V + Q L++ +L+ +
Sbjct: 7 NLINGIALAFEGDAVYSLYVRRHLIFQGQTKPNQLHRLATNYVSAKAQAMLIEAMLDHNL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ EE + + G+N A++ TK + Y ++ E + GYL++T RLE+++
Sbjct: 67 LTEEEVAIYKRGRN---AHSHTKAKNTDIITYKMSTGFEAIMGYLHMTEQITRLEELVG 122
>gi|334136727|ref|ZP_08510184.1| RNase3 domain protein [Paenibacillus sp. HGF7]
gi|333605748|gb|EGL17105.1| RNase3 domain protein [Paenibacillus sp. HGF7]
Length = 197
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 108 PKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQ 166
P KP + N LAYIGD +YE++ R++ + P + +R V + Q LQ
Sbjct: 19 PPSQKPE-LLNPLVLAYIGDAVYEMFIRQYVISMPSQRPNHLHRAATRYVSAKAQSKALQ 77
Query: 167 KLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRL 225
L+ L+ EE +V+ G+N S + T + A Y +++ E+L GYLY A RL
Sbjct: 78 ALM--PLLTEEEAGIVKRGRNAKSGS--TAKNADVLEYRHSTAFESLIGYLYYKQAYERL 133
Query: 226 EDVM 229
+M
Sbjct: 134 NYIM 137
>gi|381208310|ref|ZP_09915381.1| hypothetical protein LGrbi_00055 [Lentibacillus sp. Grbi]
Length = 132
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 121 SLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YE++ R H L + + + ++ V ++Q A++ + +YL+AEE
Sbjct: 12 ALAYMGDAVYEVHVREHLLKAGKVKPNQLHKEAVSFVSAKSQAAIVLHWMEINYLTAEEE 71
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVM-SKLGFTNG 237
VV G+N S R Y +++ E L GY Y L + RL +++ + + F G
Sbjct: 72 KVVTRGRNAKSGT--VPRNTSVQTYRYSTAFEALIGYYYLLEDKERLTELLNAAVAFVEG 129
>gi|114567862|ref|YP_755016.1| hypothetical protein Swol_2354 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338797|gb|ABI69645.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 129
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 122 LAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD ++EL R R + +++ + +A VR E+Q +L+++L+ +LS EE+D
Sbjct: 18 LAYVGDAVFELAVRTRLAIQGKRRLKDLHLDAVATVRAESQAQVLRQILD--HLSEEEQD 75
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+VR G+N + + R A Y ++ E L GY YL + +RL++++
Sbjct: 76 IVRRGRN---SRSTPPRHAEVHDYRMSTGFEALLGYTYLKGDKSRLQELLQ 123
>gi|229083410|ref|ZP_04215758.1| hypothetical protein bcere0022_900 [Bacillus cereus Rock3-44]
gi|228699843|gb|EEL52480.1| hypothetical protein bcere0022_900 [Bacillus cereus Rock3-44]
Length = 135
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGTVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + + Y +++ E L GY Y L N+ RLE+++ K
Sbjct: 67 EEEEAVLRRGRNANSGS--VPKNTDVQTYRYSTAFEALLGYHYLLNNSERLEELVYK 121
>gi|392530510|ref|ZP_10277647.1| ribonuclease for 23S RNA maturation [Carnobacterium maltaromaticum
ATCC 35586]
gi|414085693|ref|YP_006994407.1| RNase3 domain-containing protein [Carnobacterium maltaromaticum
LMA28]
gi|412999283|emb|CCO13092.1| RNase3 domain protein [Carnobacterium maltaromaticum LMA28]
Length = 140
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K S+ N +LAYIGD IYE+Y R + + + + + V + Q+AL+Q++L
Sbjct: 5 KDWSLLNGLALAYIGDAIYEVYIRDYLIQSGKTRPNQLHKSATKYVSAKAQNALMQQMLA 64
Query: 171 -DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
D L+ E + + G+N S + + + A Y A+ E+L GYL+L+ R+E++
Sbjct: 65 VDGLLTENEITMYKRGRN--SKSHTSAKNADITTYRVATGFESLMGYLHLSKQTERMEEL 122
Query: 229 M 229
+
Sbjct: 123 I 123
>gi|297618405|ref|YP_003703564.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
gi|297146242|gb|ADI02999.1| ribonuclease III [Syntrophothermus lipocalidus DSM 12680]
Length = 151
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +YELY R L + E + +++VR TQ LL+++ LS EE+D
Sbjct: 31 LAYVGDAVYELYVRTQLLAKGNRPVGEVHRDAVSLVRASTQARLLKEI--SPQLSEEEKD 88
Query: 181 VVRWGKNVGSANTRTK--RRAGAAVYNRASSLETLAGYLYL 219
V+R +N N R R + Y ++ LE L GYLYL
Sbjct: 89 VIRRARN----NKRLTPPRNVDISDYRLSTGLEALFGYLYL 125
>gi|291522470|emb|CBK80763.1| Uncharacterized protein conserved in bacteria [Coprococcus catus
GD/7]
Length = 147
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 93 LDESYMGYERWLPNPPKVGKPR-SVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNN 150
+++S + W + KP ++A +LAYIGD +YE+ R + + + +E +
Sbjct: 1 MEQSLESFSTWFRELYHLDKPDVREYSALTLAYIGDAVYEIIIRSYIVGKGNAPVERLHK 60
Query: 151 RVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSL 210
R +V+ ETQ L+ + + L+ EE V + G+N S + A + Y +A+
Sbjct: 61 RSSRLVKAETQANLIMAI--EDQLTEEEHAVYKRGRNAKSYT--MAKNATMSDYRKATGC 116
Query: 211 ETLAGYLYLTN 221
E L GYLYLT
Sbjct: 117 EALVGYLYLTE 127
>gi|418619623|ref|ZP_13182446.1| RNase3 domain protein [Staphylococcus hominis VCU122]
gi|374824189|gb|EHR88160.1| RNase3 domain protein [Staphylococcus hominis VCU122]
Length = 129
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPNRLHQVSKQYVSAKSQAQTLEVLITK 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ + EERD+VR G+N A + TK + Y ++S LE + G+LYL + N D +
Sbjct: 62 EWFTEEERDIVRRGRN---AKSYTKAKNTDIQTYRKSSGLEAIIGFLYLDHRNERLDAL 117
>gi|331268392|ref|YP_004394884.1| RNase3 domain-containing protein [Clostridium botulinum BKT015925]
gi|329124942|gb|AEB74887.1| RNase3 domain protein [Clostridium botulinum BKT015925]
Length = 137
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCET 160
+L N + + + N LA+IGD IYE++ R + + +S + + + ++ V+ +
Sbjct: 5 FLKNKFTINEAMQL-NPLVLAFIGDAIYEVFVRTYLVDEHRDMSAHKLHVKAVSFVKAHS 63
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q L++++++ L+ EE + + G+N S + A Y A+ E L G+LYLT
Sbjct: 64 QSELMKEMMD--ILTEEECRIFKRGRNAKSGT--VPKNADVTEYRMATGFEALMGFLYLT 119
Query: 221 NA-NRLEDVMS 230
N RL ++M+
Sbjct: 120 NQLERLNELMN 130
>gi|302385701|ref|YP_003821523.1| ribonuclease III [Clostridium saccharolyticum WM1]
gi|302196329|gb|ADL03900.1| ribonuclease III [Clostridium saccharolyticum WM1]
Length = 152
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 121 SLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YEL R + + + + +V Q ++++LL D L+ EE
Sbjct: 33 ALAYIGDGVYELIVRTKVMNHGSTQVHNMHKKSARLVNAGAQAEIIRRLLEDEDLTPEEV 92
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
V + G+N S T + A A Y A+ E L GYLYL + +RL ++ K
Sbjct: 93 AVYKRGRNAKSVTT--AKHATVADYRTATGFEALCGYLYLNGSLDRLVTLIGK 143
>gi|326802928|ref|YP_004320746.1| RNase3 domain-containing protein [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651191|gb|AEA01374.1| RNase3 domain protein [Aerococcus urinae ACS-120-V-Col10a]
Length = 134
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +E+ R H + L+ + + R V + Q L++ LL+ L+ E
Sbjct: 13 TLAYLGDAAWEIQVRTHLVASGLTRPHDLHERATHFVSAKAQAKLVKHLLDSQLLTEAEV 72
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLE 226
+ + G+N S + + + A Y A+ LE L GYLYL +++R +
Sbjct: 73 GIFKRGRN--SQSHSSAKNADIHSYRLATGLEALMGYLYLVDSDRFQ 117
>gi|56961912|ref|YP_173634.1| hypothetical protein ABC0130 [Bacillus clausii KSM-K16]
gi|56908146|dbj|BAD62673.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 143
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE R L + + V + Q A+L ++ L+
Sbjct: 16 LNGLALAYMGDAVYEQRVRYELLKQGAVRPNRLHKAATTYVSAKAQAAVLFQMGEQGILT 75
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKLGF 234
EE+ +VR G+N S T + Y A+ E L GYLYLTN + RLE+++ KL
Sbjct: 76 EEEQAIVRRGRNAKSHTT--PKNTDVVTYRNATGFEALLGYLYLTNKHERLEELL-KLAL 132
Query: 235 T 235
T
Sbjct: 133 T 133
>gi|403382847|ref|ZP_10924904.1| hypothetical protein PJC66_23807 [Paenibacillus sp. JC66]
Length = 156
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 107 PPKVGKPRSVFNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQD 162
P + P + LAYIGD +YEL R+H P I + V + Q
Sbjct: 9 PEQAKIPPGQMSPLVLAYIGDGVYELLIRQHLAALANHRPNQIHRLATQ---YVSAKAQS 65
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTN 221
A+L++ L LS EE ++VR G+N S + T + VY +++LE L GYLY +
Sbjct: 66 AILERWL--PLLSEEELNMVRRGRNAKSGS--TPKNTDVLVYRHSTALECLVGYLYCMGR 121
Query: 222 ANRLEDVM 229
NR+ ++M
Sbjct: 122 QNRIGELM 129
>gi|408410235|ref|ZP_11181469.1| Ribonuclease III [Lactobacillus sp. 66c]
gi|407875601|emb|CCK83275.1| Ribonuclease III [Lactobacillus sp. 66c]
Length = 147
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
+ +LAY+GD +YE RRH + L + V + Q AL+ K+L+ S L+
Sbjct: 17 LSGQTLAYLGDGVYEAAIRRHLIKGGILKPQNLQREATHYVSAKAQAALIAKMLDKSLLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE+ + G+N A T TK + A Y ++ E + GYL L A +R++++++
Sbjct: 77 DEEKTAYKRGRN---AKTHTKAKHTSLATYEMSTGFEAIFGYLDLAGASDRVQELIA 130
>gi|228475263|ref|ZP_04059988.1| cysteine--tRNA ligase [Staphylococcus hominis SK119]
gi|228270728|gb|EEK12137.1| cysteine--tRNA ligase [Staphylococcus hominis SK119]
Length = 129
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPNRLHQVSKQYVSAKSQAQTLEVLITK 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ + EERD+VR G+N A + TK + Y ++S LE + G+LYL + N D +
Sbjct: 62 EWFTEEERDIVRRGRN---AKSYTKAKNTDIQTYRKSSGLEAIIGFLYLDHRNERLDAL 117
>gi|118444271|ref|YP_877178.1| hypothetical protein NT01CX_1094 [Clostridium novyi NT]
gi|118134727|gb|ABK61771.1| uncharacterized conserved protein [Clostridium novyi NT]
Length = 137
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYL 174
N LA++GD IYE++ RR+ + + + V AV V+ +Q +++++ L
Sbjct: 18 LNPLVLAFVGDAIYEVFVRRYLVEQNQDMSAHKLHVKAVSYVKAHSQSEIMKQI--KESL 75
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
+ EE + + G+N S + A Y A+ E L G+LYLTN +RL ++M+
Sbjct: 76 TEEEERIFKRGRNAKSGT--VPKNADVREYRMATGFEALMGFLYLTNQLDRLNELMN 130
>gi|319654848|ref|ZP_08008923.1| hypothetical protein HMPREF1013_05545 [Bacillus sp. 2_A_57_CT2]
gi|317393411|gb|EFV74174.1| hypothetical protein HMPREF1013_05545 [Bacillus sp. 2_A_57_CT2]
Length = 141
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N+ +LAY+GD ++E Y R H L P + + R V + Q ++ +L++
Sbjct: 13 LNSLALAYMGDAVFETYIRHHLLQNGRVRPHFLHKEATR---YVSAKAQSIIIHELIDSE 69
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
L+ EE VVR G+N S + + Y +++ E+L GYL+L+ +R+E+++
Sbjct: 70 RLTEEELAVVRRGRNAKSGS--VPKNTDVQTYRYSTAFESLIGYLFLSKRQDRMEELI 125
>gi|33861506|ref|NP_893067.1| hypothetical protein PMM0949 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634083|emb|CAE19408.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 130
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQD 162
W+ N G P + LA++GD ++EL+ R + PL + + V+ V+ + Q
Sbjct: 4 WIQNLAPDGSPDEI-GVIQLAWLGDSVWELHQRLRHIHIPLKSRDLHLSVVNEVKAQAQS 62
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L ++ + L++ E +++R +N R + + A+Y+RA+ E L G+L+L +
Sbjct: 63 KALDEI--EHLLNSFEINLIRRARN---KTKRFPKSSDPAIYSRATGFEALVGWLFLKDP 117
Query: 223 NRLEDVMSKL 232
RL L
Sbjct: 118 KRLSKFFEYL 127
>gi|354558421|ref|ZP_08977676.1| ribonuclease III [Desulfitobacterium metallireducens DSM 15288]
gi|353546899|gb|EHC16346.1| ribonuclease III [Desulfitobacterium metallireducens DSM 15288]
Length = 137
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L +++ ++ VR TQ LLQ L+ + L+
Sbjct: 8 MNALTLAYLGDAVYELWVRTHLLELGYEKVKDLHHVATDYVRASTQAQLLQGLMPE--LT 65
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
E VV G+N + ++ Y A++ E L GY LT R ED M
Sbjct: 66 EIETQVVMRGRNTKGGHPKS---TDVITYRHATAFEALVGYWQLT---RQEDRM 113
>gi|336394674|ref|ZP_08576073.1| hypothetical protein LfarK3_02997 [Lactobacillus farciminis KCTC
3681]
Length = 137
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
FN +LAY+GD +YE++ R H L + + E ++ V + Q +L+ +L++ L+
Sbjct: 7 FNGVTLAYLGDAVYEVFIREHLLSKNIVKVNELQHQAKHYVSAKAQASLITLMLDNDVLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLT 220
+E VR KN +A +TK + + V Y+ ++ E + GYL +T
Sbjct: 67 EQE---VRIYKNGRNAKKQTKAKNTSVVTYHMSTGFEAVFGYLDIT 109
>gi|319946263|ref|ZP_08020503.1| ribonuclease III [Streptococcus australis ATCC 700641]
gi|417920405|ref|ZP_12563913.1| RNase3 domain protein [Streptococcus australis ATCC 700641]
gi|319747645|gb|EFV99898.1| ribonuclease III [Streptococcus australis ATCC 700641]
gi|342829551|gb|EGU63903.1| RNase3 domain protein [Streptococcus australis ATCC 700641]
Length = 131
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y R+H + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRKHLILQGMTKPNKLHQTATRYVSAKAQANLIAMMLEEDV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL+LT+ NRLE +++
Sbjct: 65 LTVKEVEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHLTDEINRLEKLVA 120
>gi|318041275|ref|ZP_07973231.1| hypothetical protein SCB01_06176 [Synechococcus sp. CB0101]
Length = 114
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 129 IYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNV 188
++EL+ R P E + V+A VR + Q A L L D LS EE ++VR G+N
Sbjct: 1 MWELHHRLRHCRQPGRSGELHRAVVAEVRADAQAAALAVLERDGLLSQEELELVRKGRNR 60
Query: 189 GSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
R R+ A +Y RA+ ET+ G+L+L + +RL +++ L
Sbjct: 61 AG---RGPRKGEAGIYGRATGFETMVGWLFLQDPSRLAQLLAHL 101
>gi|228905888|ref|ZP_04069785.1| hypothetical protein bthur0013_790 [Bacillus thuringiensis IBL 200]
gi|228853703|gb|EEM98463.1| hypothetical protein bthur0013_790 [Bacillus thuringiensis IBL 200]
Length = 135
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL S+L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETSFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L+N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLSNRERLDEIVYK 121
>gi|300173977|ref|YP_003773143.1| ribonuclease III [Leuconostoc gasicomitatum LMG 18811]
gi|299888356|emb|CBL92324.1| Ribonuclease III, putative [Leuconostoc gasicomitatum LMG 18811]
Length = 135
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + V ++ AL ++ DS L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLLSLGLTKVNDLQKHSKHYVSAKSHAALFACMMTDSLLTD 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E + G+N A + TK + Y ++ +E L G+L+L+ + R+ ++M+
Sbjct: 70 DELIYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGFLHLSGQSERISELMT 122
>gi|29374704|ref|NP_813856.1| hypothetical protein EF0046 [Enterococcus faecalis V583]
gi|227518064|ref|ZP_03948113.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227555728|ref|ZP_03985775.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229547085|ref|ZP_04435810.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|229550657|ref|ZP_04439382.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|255971592|ref|ZP_05422178.1| ribonuclease III [Enterococcus faecalis T1]
gi|255974564|ref|ZP_05425150.1| ribonuclease III [Enterococcus faecalis T2]
gi|256618483|ref|ZP_05475329.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256761896|ref|ZP_05502476.1| ribonuclease III [Enterococcus faecalis T3]
gi|256855024|ref|ZP_05560385.1| ribonuclease III [Enterococcus faecalis T8]
gi|256956970|ref|ZP_05561141.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256960770|ref|ZP_05564941.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256964026|ref|ZP_05568197.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|257078647|ref|ZP_05573008.1| ribonuclease III [Enterococcus faecalis JH1]
gi|257081389|ref|ZP_05575750.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|257084049|ref|ZP_05578410.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|257087878|ref|ZP_05582239.1| ribonuclease III [Enterococcus faecalis D6]
gi|257088531|ref|ZP_05582892.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257417469|ref|ZP_05594463.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257418801|ref|ZP_05595795.1| ribonuclease III [Enterococcus faecalis T11]
gi|257421385|ref|ZP_05598375.1| ribonuclease III [Enterococcus faecalis X98]
gi|293382261|ref|ZP_06628201.1| cysteine--tRNA ligase [Enterococcus faecalis R712]
gi|293386690|ref|ZP_06631263.1| cysteine--tRNA ligase [Enterococcus faecalis S613]
gi|294780004|ref|ZP_06745383.1| RNase3 domain protein [Enterococcus faecalis PC1.1]
gi|300862059|ref|ZP_07108139.1| RNase3 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|307268963|ref|ZP_07550327.1| RNase3 domain protein [Enterococcus faecalis TX4248]
gi|307274058|ref|ZP_07555268.1| RNase3 domain protein [Enterococcus faecalis TX0855]
gi|307276291|ref|ZP_07557418.1| RNase3 domain protein [Enterococcus faecalis TX2134]
gi|307284104|ref|ZP_07564274.1| RNase3 domain protein [Enterococcus faecalis TX0860]
gi|307287136|ref|ZP_07567207.1| RNase3 domain protein [Enterococcus faecalis TX0109]
gi|307296636|ref|ZP_07576456.1| RNase3 domain protein [Enterococcus faecalis TX0411]
gi|312901250|ref|ZP_07760533.1| RNase3 domain protein [Enterococcus faecalis TX0470]
gi|312903155|ref|ZP_07762336.1| RNase3 domain protein [Enterococcus faecalis TX0635]
gi|312908761|ref|ZP_07767700.1| RNase3 domain protein [Enterococcus faecalis DAPTO 512]
gi|312952480|ref|ZP_07771348.1| RNase3 domain protein [Enterococcus faecalis TX0102]
gi|312979221|ref|ZP_07790925.1| RNase3 domain protein [Enterococcus faecalis DAPTO 516]
gi|384512009|ref|YP_005707102.1| cysteine--tRNA ligase [Enterococcus faecalis OG1RF]
gi|384517150|ref|YP_005704455.1| RNase3 domain-containing protein [Enterococcus faecalis 62]
gi|397698629|ref|YP_006536417.1| RNase3 domain protein [Enterococcus faecalis D32]
gi|421514003|ref|ZP_15960724.1| Ribonuclease III family protein [Enterococcus faecalis ATCC 29212]
gi|422685648|ref|ZP_16743863.1| RNase3 domain protein [Enterococcus faecalis TX4000]
gi|422688322|ref|ZP_16746478.1| RNase3 domain protein [Enterococcus faecalis TX0630]
gi|422691841|ref|ZP_16749870.1| RNase3 domain protein [Enterococcus faecalis TX0031]
gi|422693541|ref|ZP_16751552.1| RNase3 domain protein [Enterococcus faecalis TX4244]
gi|422700224|ref|ZP_16758078.1| RNase3 domain protein [Enterococcus faecalis TX1342]
gi|422702776|ref|ZP_16760605.1| RNase3 domain protein [Enterococcus faecalis TX1302]
gi|422707472|ref|ZP_16765165.1| RNase3 domain protein [Enterococcus faecalis TX0043]
gi|422713142|ref|ZP_16769898.1| RNase3 domain protein [Enterococcus faecalis TX0309A]
gi|422717765|ref|ZP_16774439.1| RNase3 domain protein [Enterococcus faecalis TX0309B]
gi|422719152|ref|ZP_16775800.1| RNase3 domain protein [Enterococcus faecalis TX0017]
gi|422723274|ref|ZP_16779812.1| RNase3 domain protein [Enterococcus faecalis TX2137]
gi|422726586|ref|ZP_16783033.1| RNase3 domain protein [Enterococcus faecalis TX0312]
gi|422728228|ref|ZP_16784646.1| RNase3 domain protein [Enterococcus faecalis TX0012]
gi|422730610|ref|ZP_16786999.1| RNase3 domain protein [Enterococcus faecalis TX0645]
gi|422734956|ref|ZP_16791236.1| RNase3 domain protein [Enterococcus faecalis TX1341]
gi|422741656|ref|ZP_16795679.1| RNase3 domain protein [Enterococcus faecalis TX2141]
gi|422868291|ref|ZP_16914838.1| RNase3 domain protein [Enterococcus faecalis TX1467]
gi|424671638|ref|ZP_18108632.1| RNase3 domain protein [Enterococcus faecalis 599]
gi|424678693|ref|ZP_18115531.1| RNase3 domain protein [Enterococcus faecalis ERV103]
gi|424679928|ref|ZP_18116742.1| RNase3 domain protein [Enterococcus faecalis ERV116]
gi|424685121|ref|ZP_18121823.1| RNase3 domain protein [Enterococcus faecalis ERV129]
gi|424687816|ref|ZP_18124442.1| RNase3 domain protein [Enterococcus faecalis ERV25]
gi|424691340|ref|ZP_18127863.1| RNase3 domain protein [Enterococcus faecalis ERV31]
gi|424692733|ref|ZP_18129212.1| RNase3 domain protein [Enterococcus faecalis ERV37]
gi|424698918|ref|ZP_18135162.1| RNase3 domain protein [Enterococcus faecalis ERV41]
gi|424700058|ref|ZP_18136264.1| RNase3 domain protein [Enterococcus faecalis ERV62]
gi|424705100|ref|ZP_18141186.1| RNase3 domain protein [Enterococcus faecalis ERV63]
gi|424706207|ref|ZP_18142214.1| RNase3 domain protein [Enterococcus faecalis ERV65]
gi|424716048|ref|ZP_18145366.1| RNase3 domain protein [Enterococcus faecalis ERV68]
gi|424719785|ref|ZP_18148919.1| RNase3 domain protein [Enterococcus faecalis ERV72]
gi|424722894|ref|ZP_18151919.1| RNase3 domain protein [Enterococcus faecalis ERV73]
gi|424727881|ref|ZP_18156508.1| RNase3 domain protein [Enterococcus faecalis ERV81]
gi|424740151|ref|ZP_18168560.1| RNase3 domain protein [Enterococcus faecalis ERV85]
gi|424754719|ref|ZP_18182628.1| RNase3 domain protein [Enterococcus faecalis ERV93]
gi|428765728|ref|YP_007151839.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|430361551|ref|ZP_19426711.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|430372120|ref|ZP_19429649.1| ribonuclease III [Enterococcus faecalis M7]
gi|81437608|sp|Q839V4.1|MRNC_ENTFA RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|29342162|gb|AAO79928.1| conserved hypothetical protein [Enterococcus faecalis V583]
gi|227074500|gb|EEI12463.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227175133|gb|EEI56105.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229304223|gb|EEN70219.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|229307814|gb|EEN73801.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|255962610|gb|EET95086.1| ribonuclease III [Enterococcus faecalis T1]
gi|255967436|gb|EET98058.1| ribonuclease III [Enterococcus faecalis T2]
gi|256598010|gb|EEU17186.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256683147|gb|EEU22842.1| ribonuclease III [Enterococcus faecalis T3]
gi|256709537|gb|EEU24584.1| ribonuclease III [Enterococcus faecalis T8]
gi|256947466|gb|EEU64098.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256951266|gb|EEU67898.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256954522|gb|EEU71154.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|256986677|gb|EEU73979.1| ribonuclease III [Enterococcus faecalis JH1]
gi|256989419|gb|EEU76721.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|256992079|gb|EEU79381.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|256995908|gb|EEU83210.1| ribonuclease III [Enterococcus faecalis D6]
gi|256997343|gb|EEU83863.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257159297|gb|EEU89257.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257160629|gb|EEU90589.1| ribonuclease III [Enterococcus faecalis T11]
gi|257163209|gb|EEU93169.1| ribonuclease III [Enterococcus faecalis X98]
gi|291080375|gb|EFE17739.1| cysteine--tRNA ligase [Enterococcus faecalis R712]
gi|291083859|gb|EFE20822.1| cysteine--tRNA ligase [Enterococcus faecalis S613]
gi|294452898|gb|EFG21321.1| RNase3 domain protein [Enterococcus faecalis PC1.1]
gi|295112379|emb|CBL31016.1| Uncharacterized protein conserved in bacteria [Enterococcus sp.
7L76]
gi|300848584|gb|EFK76341.1| RNase3 domain protein [Enterococcus faecalis TUSoD Ef11]
gi|306495972|gb|EFM65560.1| RNase3 domain protein [Enterococcus faecalis TX0411]
gi|306501734|gb|EFM71025.1| RNase3 domain protein [Enterococcus faecalis TX0109]
gi|306503475|gb|EFM72724.1| RNase3 domain protein [Enterococcus faecalis TX0860]
gi|306507034|gb|EFM76177.1| RNase3 domain protein [Enterococcus faecalis TX2134]
gi|306509366|gb|EFM78426.1| RNase3 domain protein [Enterococcus faecalis TX0855]
gi|306514771|gb|EFM83322.1| RNase3 domain protein [Enterococcus faecalis TX4248]
gi|310625199|gb|EFQ08482.1| RNase3 domain protein [Enterococcus faecalis DAPTO 512]
gi|310629576|gb|EFQ12859.1| RNase3 domain protein [Enterococcus faecalis TX0102]
gi|310633546|gb|EFQ16829.1| RNase3 domain protein [Enterococcus faecalis TX0635]
gi|311287986|gb|EFQ66542.1| RNase3 domain protein [Enterococcus faecalis DAPTO 516]
gi|311291627|gb|EFQ70183.1| RNase3 domain protein [Enterococcus faecalis TX0470]
gi|315026627|gb|EFT38559.1| RNase3 domain protein [Enterococcus faecalis TX2137]
gi|315029625|gb|EFT41557.1| RNase3 domain protein [Enterococcus faecalis TX4000]
gi|315033511|gb|EFT45443.1| RNase3 domain protein [Enterococcus faecalis TX0017]
gi|315143638|gb|EFT87654.1| RNase3 domain protein [Enterococcus faecalis TX2141]
gi|315149011|gb|EFT93027.1| RNase3 domain protein [Enterococcus faecalis TX4244]
gi|315151335|gb|EFT95351.1| RNase3 domain protein [Enterococcus faecalis TX0012]
gi|315153506|gb|EFT97522.1| RNase3 domain protein [Enterococcus faecalis TX0031]
gi|315155077|gb|EFT99093.1| RNase3 domain protein [Enterococcus faecalis TX0043]
gi|315158520|gb|EFU02537.1| RNase3 domain protein [Enterococcus faecalis TX0312]
gi|315163379|gb|EFU07396.1| RNase3 domain protein [Enterococcus faecalis TX0645]
gi|315165682|gb|EFU09699.1| RNase3 domain protein [Enterococcus faecalis TX1302]
gi|315168266|gb|EFU12283.1| RNase3 domain protein [Enterococcus faecalis TX1341]
gi|315171291|gb|EFU15308.1| RNase3 domain protein [Enterococcus faecalis TX1342]
gi|315573948|gb|EFU86139.1| RNase3 domain protein [Enterococcus faecalis TX0309B]
gi|315578630|gb|EFU90821.1| RNase3 domain protein [Enterococcus faecalis TX0630]
gi|315581899|gb|EFU94090.1| RNase3 domain protein [Enterococcus faecalis TX0309A]
gi|323479283|gb|ADX78722.1| RNase3 domain protein [Enterococcus faecalis 62]
gi|327533898|gb|AEA92732.1| cysteine--tRNA ligase [Enterococcus faecalis OG1RF]
gi|329576210|gb|EGG57728.1| RNase3 domain protein [Enterococcus faecalis TX1467]
gi|397335268|gb|AFO42940.1| RNase3 domain protein [Enterococcus faecalis D32]
gi|401672899|gb|EJS79336.1| Ribonuclease III family protein [Enterococcus faecalis ATCC 29212]
gi|402350996|gb|EJU85890.1| RNase3 domain protein [Enterococcus faecalis ERV103]
gi|402355397|gb|EJU90172.1| RNase3 domain protein [Enterococcus faecalis ERV116]
gi|402358253|gb|EJU92933.1| RNase3 domain protein [Enterococcus faecalis 599]
gi|402359447|gb|EJU94077.1| RNase3 domain protein [Enterococcus faecalis ERV129]
gi|402362249|gb|EJU96785.1| RNase3 domain protein [Enterococcus faecalis ERV31]
gi|402362950|gb|EJU97461.1| RNase3 domain protein [Enterococcus faecalis ERV25]
gi|402369951|gb|EJV04197.1| RNase3 domain protein [Enterococcus faecalis ERV41]
gi|402374912|gb|EJV08914.1| RNase3 domain protein [Enterococcus faecalis ERV62]
gi|402376936|gb|EJV10848.1| RNase3 domain protein [Enterococcus faecalis ERV37]
gi|402380262|gb|EJV14023.1| RNase3 domain protein [Enterococcus faecalis ERV63]
gi|402388301|gb|EJV21747.1| RNase3 domain protein [Enterococcus faecalis ERV65]
gi|402388974|gb|EJV22395.1| RNase3 domain protein [Enterococcus faecalis ERV68]
gi|402395265|gb|EJV28375.1| RNase3 domain protein [Enterococcus faecalis ERV72]
gi|402395461|gb|EJV28566.1| RNase3 domain protein [Enterococcus faecalis ERV81]
gi|402400665|gb|EJV33481.1| RNase3 domain protein [Enterococcus faecalis ERV73]
gi|402402523|gb|EJV35232.1| RNase3 domain protein [Enterococcus faecalis ERV85]
gi|402402828|gb|EJV35525.1| RNase3 domain protein [Enterococcus faecalis ERV93]
gi|427183901|emb|CCO71125.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|429512419|gb|ELA02026.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|429514835|gb|ELA04369.1| ribonuclease III [Enterococcus faecalis M7]
Length = 132
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAGEMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS---- 230
EE + + G+N S + A Y A+ E+L GYL+LT RLE++++
Sbjct: 67 EEEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYLHLTQQKERLEELINWCIK 124
Query: 231 KLGFTN 236
K+G TN
Sbjct: 125 KVGETN 130
>gi|421858346|ref|ZP_16290617.1| uncharacterized protein conserved in bacteria [Paenibacillus
popilliae ATCC 14706]
gi|410832104|dbj|GAC41054.1| uncharacterized protein conserved in bacteria [Paenibacillus
popilliae ATCC 14706]
Length = 180
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 101 ERWL-PNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRC 158
E WL P PP K + LAY+GD +YE+ R++ + P + + + V
Sbjct: 33 ETWLFPYPP--AKEPKLLPPIVLAYMGDAVYEMAIRQYLISMPNHRPQVLHRQATRYVSA 90
Query: 159 ETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
++Q L +L+ L+ EE D+VR G+N SA ++ A Y +A++LE L GYLY
Sbjct: 91 KSQARALARLV--PLLTTEEADIVRQGRNAKSAVPKS---ANVNEYRQATALEALFGYLY 145
Query: 219 LTN 221
+
Sbjct: 146 FSG 148
>gi|94995144|ref|YP_603242.1| hypothetical protein MGAS10750_Spy1748 [Streptococcus pyogenes
MGAS10750]
gi|94548652|gb|ABF38698.1| hypothetical protein MGAS10750_Spy1748 [Streptococcus pyogenes
MGAS10750]
Length = 137
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MTNPVDV----NLINGIALAFEGDAVYSCYVRRHLIFQGKTKPSQLHRLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL- 217
Q L+Q +L L+ +E D+ + G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAQLLTEKEEDIYKRGRNT---NSHTKAKNADIITYRMSTGFEAIMGYLD 110
Query: 218 YLTNANRLEDVM 229
+ RLE+++
Sbjct: 111 MMGQKERLEELI 122
>gi|15675743|ref|NP_269917.1| hypothetical protein SPy_1940 [Streptococcus pyogenes SF370]
gi|19746853|ref|NP_607989.1| hypothetical protein spyM18_2007 [Streptococcus pyogenes MGAS8232]
gi|21911207|ref|NP_665475.1| hypothetical protein SpyM3_1671 [Streptococcus pyogenes MGAS315]
gi|50915008|ref|YP_060980.1| hypothetical protein M6_Spy1662 [Streptococcus pyogenes MGAS10394]
gi|56808515|ref|ZP_00366252.1| COG1939: Uncharacterized protein conserved in bacteria
[Streptococcus pyogenes M49 591]
gi|71911467|ref|YP_283017.1| hypothetical protein M5005_Spy_1654 [Streptococcus pyogenes
MGAS5005]
gi|209560084|ref|YP_002286556.1| hypothetical protein Spy49_1603c [Streptococcus pyogenes NZ131]
gi|306826618|ref|ZP_07459923.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
gi|383480617|ref|YP_005389511.1| ribonuclease III family protein [Streptococcus pyogenes MGAS15252]
gi|383494599|ref|YP_005412275.1| ribonuclease III family protein [Streptococcus pyogenes MGAS1882]
gi|410681315|ref|YP_006933717.1| hypothetical protein A20_1703c [Streptococcus pyogenes A20]
gi|13622963|gb|AAK34638.1| conserved hypothetical proteins [Streptococcus pyogenes M1 GAS]
gi|19749093|gb|AAL98488.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21905419|gb|AAM80278.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|50904082|gb|AAT87797.1| Hypothetical Protein M6_Spy1662 [Streptococcus pyogenes MGAS10394]
gi|71854249|gb|AAZ52272.1| hypothetical protein M5005_Spy1654 [Streptococcus pyogenes
MGAS5005]
gi|94544739|gb|ABF34787.1| hypothetical protein MGAS10270_Spy1722 [Streptococcus pyogenes
MGAS10270]
gi|209541285|gb|ACI61861.1| Conserved hypothetical protein [Streptococcus pyogenes NZ131]
gi|304431196|gb|EFM34200.1| cysteine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
gi|378928607|gb|AFC66813.1| ribonuclease III family protein [Streptococcus pyogenes MGAS15252]
gi|378930326|gb|AFC68743.1| ribonuclease III family protein [Streptococcus pyogenes MGAS1882]
gi|395453283|dbj|BAM29622.1| hypothetical protein M1GAS476_0282 [Streptococcus pyogenes M1 476]
gi|409693904|gb|AFV38764.1| hypothetical protein A20_1703c [Streptococcus pyogenes A20]
Length = 137
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MTNPVDV----NLINGIALAFEGDAVYSYYVRRHLIFQGKTKPSQLHRLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL- 217
Q L+Q +L L+ +E D+ + G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAQLLTEKEEDIYKRGRN---TNSHTKAKNADIITYRMSTGFEAIMGYLD 110
Query: 218 YLTNANRLEDVM 229
+ RLE+++
Sbjct: 111 MMGQKERLEELI 122
>gi|238855654|ref|ZP_04645954.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260664904|ref|ZP_05865755.1| ribonuclease III family protein [Lactobacillus jensenii SJ-7A-US]
gi|313472549|ref|ZP_07813039.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus jensenii 1153]
gi|238831720|gb|EEQ24057.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|239529986|gb|EEQ68987.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus jensenii 1153]
gi|260561387|gb|EEX27360.1| ribonuclease III family protein [Lactobacillus jensenii SJ-7A-US]
Length = 147
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 110 VGKPRSVF---------NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCE 159
+GK R +F N +LAY+GD +YE+Y RRH L + + R V +
Sbjct: 1 MGKIRQLFEKDINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK 60
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q AL+ K+ +D L+ E + G+N S +T K A Y ++ E + GYL L
Sbjct: 61 AQAALISKMQDDQILTEAELATFKRGRNAKS-HTHAK-NTKIATYKLSTGFEAIFGYLEL 118
Query: 220 TNA-NRLEDV 228
+ +R+E++
Sbjct: 119 LDKHDRIEEL 128
>gi|302855282|ref|XP_002959138.1| hypothetical protein VOLCADRAFT_121780 [Volvox carteri f.
nagariensis]
gi|300255500|gb|EFJ39802.1| hypothetical protein VOLCADRAFT_121780 [Volvox carteri f.
nagariensis]
Length = 248
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDV 228
L+ L+AEE DV+RWG+N +A + R VY +A+++E L +LYLT+ NR +
Sbjct: 171 LSGVVLTAEELDVLRWGRN--AAVSSIPRDVPVGVYKKATAVEVLVAHLYLTDPNRCAAL 228
Query: 229 MSKLGFTNGSSTQMI 243
++ G T ++I
Sbjct: 229 IAAAGLTVEECPEVI 243
>gi|94989285|ref|YP_597386.1| hypothetical protein MGAS9429_Spy1655 [Streptococcus pyogenes
MGAS9429]
gi|94993174|ref|YP_601273.1| hypothetical protein MGAS2096_Spy1677 [Streptococcus pyogenes
MGAS2096]
gi|386363434|ref|YP_006072765.1| hypothetical protein SPYALAB49_001642 [Streptococcus pyogenes
Alab49]
gi|417856101|ref|ZP_12501160.1| hypothetical protein SPYOHK_01155 [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421893022|ref|ZP_16323602.1| COG1939: Ribonuclease III family protein [Streptococcus pyogenes
NS88.2]
gi|94542793|gb|ABF32842.1| hypothetical protein MGAS9429_Spy1655 [Streptococcus pyogenes
MGAS9429]
gi|94546682|gb|ABF36729.1| hypothetical protein MGAS2096_Spy1677 [Streptococcus pyogenes
MGAS2096]
gi|350277843|gb|AEQ25211.1| hypothetical protein SPYALAB49_001642 [Streptococcus pyogenes
Alab49]
gi|379981216|emb|CCG27324.1| COG1939: Ribonuclease III family protein [Streptococcus pyogenes
NS88.2]
gi|387933056|gb|EIK41169.1| hypothetical protein SPYOHK_01155 [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 137
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MTNPVDV----NLINGIALAFEGDAVYSYYVRRHLIFQGKTKPSQLHRLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL- 217
Q L+Q +L L+ +E D+ + G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAHLLTEKEEDIYKRGRN---TNSHTKAKNADIITYRMSTGFEAIMGYLD 110
Query: 218 YLTNANRLEDVM 229
+ RLE+++
Sbjct: 111 MMGQKERLEELI 122
>gi|395241967|ref|ZP_10418967.1| Ribonuclease III [Lactobacillus pasteurii CRBIP 24.76]
gi|394480715|emb|CCI85207.1| Ribonuclease III [Lactobacillus pasteurii CRBIP 24.76]
Length = 147
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 106 NPPKVGKPRSV----FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCET 160
N KV ++V + +LAYIGD +YE+Y RRH L + + R V +
Sbjct: 2 NKAKVLVEQTVNPNTLSGQTLAYIGDAVYEIYIRRHLLRGGIVKPQVLQREATYYVSAKA 61
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
Q AL+ KL ++ L+ EE + G+N A T TK + Y ++ E + GYL L
Sbjct: 62 QAALITKLQDEQLLTEEETAAFKRGRN---AKTHTKAKNTSLKTYQLSTGFEAMIGYLDL 118
Query: 220 TNA-NRLEDV 228
+ +R+E++
Sbjct: 119 ADEKDRVEEL 128
>gi|205372088|ref|ZP_03224905.1| hypothetical protein Bcoam_01016 [Bacillus coahuilensis m4-4]
Length = 130
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N LAY+GD IYE+Y R++ + P + + R V + Q +++ L
Sbjct: 13 LNPLVLAYMGDAIYEVYVRQYLIEKGKVKPHILHKEATR---YVSAKAQAEIVKSWLEGD 69
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
LS EE+ V+R G+N S + + Y +S+ E + GYL+L R+E++M K
Sbjct: 70 VLSEEEQSVLRRGRNAKSGS--VPKNTDVQTYRYSSAFEAVIGYLHLLGREERIEELMKK 127
Query: 232 L 232
+
Sbjct: 128 I 128
>gi|383786629|ref|YP_005471198.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109476|gb|AFG35079.1| hypothetical protein Ferpe_0969 [Fervidobacterium pennivorans DSM
9078]
Length = 145
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ +LAY+GD +Y LY + + L + E + V E Q L K+L L+
Sbjct: 31 LSSDALAYLGDAVYNLYIKLYVL-KDIKARELHRLSNTYVSREGQSKALDKIL--PILTE 87
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRL 225
+E+D+VR G N SA ++ +Y +++ E L GYLYLT+ RL
Sbjct: 88 KEKDIVRRGMNSKSA----RKHGNDRLYIKSTGFEALIGYLYLTDKRRL 132
>gi|407708039|ref|YP_006831624.1| 60 kDa chaperonin 2 [Bacillus thuringiensis MC28]
gi|407385724|gb|AFU16225.1| ribonuclease Iii [Bacillus thuringiensis MC28]
Length = 135
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL S+L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETSFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|389576398|ref|ZP_10166426.1| hypothetical protein EubceDRAFT1_0991 [Eubacterium cellulosolvens
6]
gi|389311883|gb|EIM56816.1| hypothetical protein EubceDRAFT1_0991 [Eubacterium cellulosolvens
6]
Length = 174
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGDCIYEL R + ++ + + A+V+ E Q A++ L+ EE
Sbjct: 33 TLAYIGDCIYELVVRTKVVREANEAVNRLHRKASALVKAEAQSAMIGIFEERGILTEEEL 92
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V + G+N A T K A Y RA+ E + GYLYL
Sbjct: 93 RVYKRGRNA-KAYTHAK-NASIQEYRRATGFEAVFGYLYL 130
>gi|333445841|ref|ZP_08480783.1| ribonuclease III [Leuconostoc inhae KCTC 3774]
Length = 144
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + V ++ AL ++ DS L+
Sbjct: 19 NGLSLAYIGDAIYELEVRQHLLSLGLTKVNDLQKHSKHYVSAKSHAALFACMMTDSLLTD 78
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E + G+N A + TK + Y ++ +E L G+L+L+ + R+ ++M+
Sbjct: 79 DELIYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGFLHLSGQSERISELMT 131
>gi|392392062|ref|YP_006428664.1| hypothetical protein Desde_0402 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390523140|gb|AFL98870.1| hypothetical protein Desde_0402 [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 156
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
PRS NA +LAY+GD +YEL+ R H L +++ + VR TQ LL +L
Sbjct: 2 PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVKDLHRLATKYVRAGTQAKLLHHIL 61
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L +E VV G+N + ++ Y A++ E L GY LT
Sbjct: 62 --PFLDDQETSVVHRGRNAKGGHPKS---TDVITYRHATAFEALVGYWQLTG 108
>gi|71904304|ref|YP_281107.1| hypothetical protein M28_Spy1642 [Streptococcus pyogenes MGAS6180]
gi|71803399|gb|AAX72752.1| hypothetical protein M28_Spy1642 [Streptococcus pyogenes MGAS6180]
Length = 137
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCE 159
+ NP V ++ N +LA+ GD +Y Y RRH +F P + R V +
Sbjct: 1 MINPVDV----NLINGIALAFEGDAVYSYYVRRHLIFQGKTKPSQLHRLATR---YVSAK 53
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL- 217
Q L+Q +L L+ +E D+ + G+N N+ TK + A Y ++ E + GYL
Sbjct: 54 AQANLIQAMLEAQLLTEKEEDIYKRGRN---TNSHTKAKNADIITYRMSTGFEAIMGYLD 110
Query: 218 YLTNANRLEDVM 229
+ RLE+++
Sbjct: 111 MMGQKERLEELI 122
>gi|339302400|ref|ZP_08651453.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
gi|417004322|ref|ZP_11943055.1| hypothetical protein FSLSAGS3026_01303 [Streptococcus agalactiae
FSL S3-026]
gi|319744133|gb|EFV96506.1| ribonuclease III [Streptococcus agalactiae ATCC 13813]
gi|341578121|gb|EGS28518.1| hypothetical protein FSLSAGS3026_01303 [Streptococcus agalactiae
FSL S3-026]
Length = 128
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y LY RRH + + + + + V Q L+ +L ++ L
Sbjct: 6 LINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINTMLEENIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ EE+ + + G+N AN+ TK + A Y ++ E L GYL +T RLE ++
Sbjct: 66 TDEEQLIYKRGRN---ANSHTKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQ 120
>gi|410593907|ref|YP_006950634.1| Ribonuclease mrnC [Streptococcus agalactiae SA20-06]
gi|421532836|ref|ZP_15979181.1| hypothetical protein M3M_07750 [Streptococcus agalactiae
STIR-CD-17]
gi|403641895|gb|EJZ02804.1| hypothetical protein M3M_07750 [Streptococcus agalactiae
STIR-CD-17]
gi|410517546|gb|AFV71690.1| Ribonuclease mrnC [Streptococcus agalactiae SA20-06]
Length = 128
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y LY RRH + + + + + V Q L+ +L ++ L
Sbjct: 6 LINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEENIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ EE+ + + G+N AN+ TK + A Y ++ E L GYL +T RLE ++
Sbjct: 66 TDEEQLIYKRGRN---ANSHTKAKNADMITYRMSTGFEALMGYLDMTGQIKRLETLIQ 120
>gi|182420006|ref|ZP_02951240.1| ribonuclease III [Clostridium butyricum 5521]
gi|237666767|ref|ZP_04526752.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376043|gb|EDT73630.1| ribonuclease III [Clostridium butyricum 5521]
gi|237657966|gb|EEP55521.1| ribonuclease III [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 137
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L LS + + + + V+ ++Q +++ K+ + +
Sbjct: 17 MLNPLQLALIGDGVYEIFIRNYILTNNTALSANKIHVKAIQYVKAKSQASIMHKI--EGF 74
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E V + G+N SA + A Y A+ E L GYLYL+ +RLE + +K
Sbjct: 75 LEEDEEAVYKRGRNAKSAT--VPKNADVRDYRMATGFEALVGYLYLSGKKDRLEFIFNK 131
>gi|352516199|ref|YP_004885516.1| hypothetical protein TEH_00250 [Tetragenococcus halophilus NBRC
12172]
gi|348600306|dbj|BAK93352.1| hypothetical protein TEH_00250 [Tetragenococcus halophilus NBRC
12172]
Length = 129
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + + + V + Q L+Q++L++ L
Sbjct: 7 LNGLALAYVGDAIYEVYIRDHLIAIGNTRPNQLHRLATSYVSAKAQAFLIQEMLDEQILK 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E R G+N S + + + Y ++ E+L GYL+L+ RLE++++
Sbjct: 67 TDEDTYYRRGRN--SKSHTSAKNTDVKTYRMSTGFESLMGYLHLSKQTQRLEELVT 120
>gi|78042661|ref|YP_361142.1| hypothetical protein CHY_2337 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77994776|gb|ABB13675.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 129
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCET------QDALLQKLLNDSYL 174
+LAY+GD +YEL R + L E Y ++ V + Q AL +L+ + YL
Sbjct: 10 ALAYLGDAVYELLTREYVL------ERYGGKMGEVHKKSVSLVNARQQALAGELI-EEYL 62
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
++EER++ R G+N A R VY R++ LE + G+LYL N R++++
Sbjct: 63 TSEEREIFRRGRN---AKGNYPRNVEVVVYRRSTGLEAVFGFLYLKGNIVRIKELFG 116
>gi|424757613|ref|ZP_18185349.1| RNase3 domain protein [Enterococcus faecalis R508]
gi|402406429|gb|EJV38980.1| RNase3 domain protein [Enterococcus faecalis R508]
Length = 132
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAREMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS---- 230
EE + + G+N S + A Y A+ E+L GYL+LT RLE++++
Sbjct: 67 EEEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYLHLTQQKERLEELINWCIK 124
Query: 231 KLGFTN 236
K+G TN
Sbjct: 125 KVGETN 130
>gi|429204788|ref|ZP_19196071.1| hypothetical protein D271_03775 [Lactobacillus saerimneri 30a]
gi|428147011|gb|EKW99244.1| hypothetical protein D271_03775 [Lactobacillus saerimneri 30a]
Length = 130
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y R H L L+ + V + Q L++K+ L+
Sbjct: 7 NGIALAYMGDAIYEVYIREHLLKGGLTKPNKLQKLATHYVSAKAQAFLIEKMKAADLLTT 66
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
EE++ + G+N S +T+ K + Y ++ E L GYL+L+ RL+++
Sbjct: 67 EEKEFFKRGRNAKS-HTKAKNTS-VGTYRISTGFEALFGYLFLSGQKERLDEL 117
>gi|22536392|ref|NP_687243.1| hypothetical protein SAG0208 [Streptococcus agalactiae 2603V/R]
gi|25010278|ref|NP_734673.1| hypothetical protein gbs0203 [Streptococcus agalactiae NEM316]
gi|76788467|ref|YP_328939.1| hypothetical protein SAK_0271 [Streptococcus agalactiae A909]
gi|76799580|ref|ZP_00781705.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
gi|77405369|ref|ZP_00782464.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|77409662|ref|ZP_00786332.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
gi|77410950|ref|ZP_00787306.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gi|77413800|ref|ZP_00789980.1| conserved hypothetical protein [Streptococcus agalactiae 515]
gi|406708737|ref|YP_006763463.1| hypothetical protein A964_0221 [Streptococcus agalactiae
GD201008-001]
gi|421146700|ref|ZP_15606405.1| hypothetical protein GB112_02378 [Streptococcus agalactiae GB00112]
gi|424050223|ref|ZP_17787771.1| hypothetical protein WY5_09276 [Streptococcus agalactiae ZQ0910]
gi|22533219|gb|AAM99115.1|AE014201_13 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|23094630|emb|CAD45848.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563524|gb|ABA46108.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|76585063|gb|EAO61696.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
gi|77160162|gb|EAO71293.1| conserved hypothetical protein [Streptococcus agalactiae 515]
gi|77163005|gb|EAO73960.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gi|77171731|gb|EAO74930.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
gi|77176047|gb|EAO78821.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|389648298|gb|EIM69808.1| hypothetical protein WY5_09276 [Streptococcus agalactiae ZQ0910]
gi|401686618|gb|EJS82593.1| hypothetical protein GB112_02378 [Streptococcus agalactiae GB00112]
gi|406649622|gb|AFS45023.1| hypothetical protein A964_0221 [Streptococcus agalactiae
GD201008-001]
Length = 128
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y LY RRH + + + + + V Q L+ +L ++ L
Sbjct: 6 LINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEENIL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ EE+ + + G+N AN+ TK + A Y ++ E L GYL +T RLE ++
Sbjct: 66 TDEEQLIYKRGRN---ANSHTKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQ 120
>gi|366163862|ref|ZP_09463617.1| hypothetical protein AcelC_09348 [Acetivibrio cellulolyticus CD2]
Length = 140
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE++ R + + + + R + V+ + Q ++ +++ L+ +E D
Sbjct: 28 LAYIGDAVYEVFIRTLLVSEGNIPVHVLHKRSINFVKAKAQSDIIHRIMEK--LNPDELD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKLGFTNG 237
+VR G+N S + A Y A+ E+L GYLYL N RL +V+ K+ + G
Sbjct: 86 IVRRGRNAKSGTI--PKNADVTEYKYATGFESLIGYLYLRKQNDRLMEVL-KMAISEG 140
>gi|418323176|ref|ZP_12934465.1| RNase3 domain protein [Staphylococcus pettenkoferi VCU012]
gi|365230269|gb|EHM71379.1| RNase3 domain protein [Staphylococcus pettenkoferi VCU012]
Length = 129
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L L+ +
Sbjct: 5 LLNPLTLAYLGDAVLDQHVRTYIV---LKLQSKPHRLHQVAKRYVSAKSQAQTLDYLMEE 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
YL+ EE+D++R G+N S +T+ K Y ++S LE + GYLYL
Sbjct: 62 DYLTEEEQDIMRRGRNAKS-HTKAK-NTDIQTYRKSSGLEAVLGYLYL 107
>gi|289449355|ref|YP_003475063.1| RNase3 domain-containing protein [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289183902|gb|ADC90327.1| RNase3 domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 167
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 119 AASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
++LAYIGD YEL+ RR L F + ++ + +V Q AL+++ + L +
Sbjct: 34 VSTLAYIGDAYYELWVRRRLLSFIVAKSGDLHHLTVKLVNATFQAALVRQWQKEDILDLD 93
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
E + G+N G+ K A Y A+ LETL GYLYL+N
Sbjct: 94 EEAIFLRGRN-GNPGAMAK-HADPVDYRLATGLETLVGYLYLSN 135
>gi|218895226|ref|YP_002443637.1| hypothetical protein BCG9842_B5215 [Bacillus cereus G9842]
gi|228898844|ref|ZP_04063126.1| hypothetical protein bthur0014_780 [Bacillus thuringiensis IBL
4222]
gi|228963191|ref|ZP_04124360.1| hypothetical protein bthur0004_820 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229074152|ref|ZP_04207198.1| hypothetical protein bcere0024_780 [Bacillus cereus Rock4-18]
gi|229094813|ref|ZP_04225818.1| hypothetical protein bcere0020_790 [Bacillus cereus Rock3-29]
gi|229100890|ref|ZP_04231694.1| hypothetical protein bcere0019_950 [Bacillus cereus Rock3-28]
gi|229113767|ref|ZP_04243202.1| hypothetical protein bcere0017_800 [Bacillus cereus Rock1-3]
gi|402562818|ref|YP_006605542.1| hypothetical protein BTG_20455 [Bacillus thuringiensis HD-771]
gi|423364485|ref|ZP_17341975.1| hypothetical protein IC1_06452 [Bacillus cereus VD022]
gi|423381862|ref|ZP_17359145.1| hypothetical protein IC9_05214 [Bacillus cereus BAG1O-2]
gi|423439731|ref|ZP_17416637.1| hypothetical protein IEA_00061 [Bacillus cereus BAG4X2-1]
gi|423450112|ref|ZP_17426990.1| hypothetical protein IEC_04719 [Bacillus cereus BAG5O-1]
gi|423467988|ref|ZP_17444756.1| hypothetical protein IEK_05175 [Bacillus cereus BAG6O-1]
gi|423537388|ref|ZP_17513806.1| hypothetical protein IGI_05220 [Bacillus cereus HuB2-9]
gi|423543116|ref|ZP_17519504.1| hypothetical protein IGK_05205 [Bacillus cereus HuB4-10]
gi|423543578|ref|ZP_17519936.1| hypothetical protein IGO_00013 [Bacillus cereus HuB5-5]
gi|423565551|ref|ZP_17541827.1| hypothetical protein II5_04955 [Bacillus cereus MSX-A1]
gi|423620301|ref|ZP_17596132.1| hypothetical protein IIO_05624 [Bacillus cereus VD115]
gi|423626967|ref|ZP_17602742.1| hypothetical protein IK3_05562 [Bacillus cereus VD148]
gi|434378733|ref|YP_006613377.1| hypothetical protein BTF1_26475 [Bacillus thuringiensis HD-789]
gi|218543127|gb|ACK95521.1| conserved hypothetical protein [Bacillus cereus G9842]
gi|228669638|gb|EEL25045.1| hypothetical protein bcere0017_800 [Bacillus cereus Rock1-3]
gi|228682469|gb|EEL36542.1| hypothetical protein bcere0019_950 [Bacillus cereus Rock3-28]
gi|228688556|gb|EEL42429.1| hypothetical protein bcere0020_790 [Bacillus cereus Rock3-29]
gi|228708922|gb|EEL61049.1| hypothetical protein bcere0024_780 [Bacillus cereus Rock4-18]
gi|228796449|gb|EEM43888.1| hypothetical protein bthur0004_820 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228860744|gb|EEN05122.1| hypothetical protein bthur0014_780 [Bacillus thuringiensis IBL
4222]
gi|401072904|gb|EJP81358.1| hypothetical protein IC1_06452 [Bacillus cereus VD022]
gi|401126735|gb|EJQ34469.1| hypothetical protein IEC_04719 [Bacillus cereus BAG5O-1]
gi|401166816|gb|EJQ74116.1| hypothetical protein IGK_05205 [Bacillus cereus HuB4-10]
gi|401187743|gb|EJQ94815.1| hypothetical protein IGO_00013 [Bacillus cereus HuB5-5]
gi|401193753|gb|EJR00756.1| hypothetical protein II5_04955 [Bacillus cereus MSX-A1]
gi|401248861|gb|EJR55182.1| hypothetical protein IIO_05624 [Bacillus cereus VD115]
gi|401250162|gb|EJR56466.1| hypothetical protein IK3_05562 [Bacillus cereus VD148]
gi|401628488|gb|EJS46329.1| hypothetical protein IC9_05214 [Bacillus cereus BAG1O-2]
gi|401791470|gb|AFQ17509.1| hypothetical protein BTG_20455 [Bacillus thuringiensis HD-771]
gi|401877290|gb|AFQ29457.1| hypothetical protein BTF1_26475 [Bacillus thuringiensis HD-789]
gi|402411855|gb|EJV44218.1| hypothetical protein IEK_05175 [Bacillus cereus BAG6O-1]
gi|402421912|gb|EJV54156.1| hypothetical protein IEA_00061 [Bacillus cereus BAG4X2-1]
gi|402459094|gb|EJV90832.1| hypothetical protein IGI_05220 [Bacillus cereus HuB2-9]
Length = 135
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL S+L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETSFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|409350092|ref|ZP_11233335.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407877675|emb|CCK85393.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 144
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
+ +LAY+GD +YE RRH + L + V + Q AL+ K+L+ + L+
Sbjct: 14 LSGQTLAYLGDGVYEAAIRRHLIKGGILKPQNLQREATHYVSAKAQAALIAKMLDKTLLT 73
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE+ + G+N A T TK + A Y ++ E + GYL L A +R++++++
Sbjct: 74 DEEKTAYKRGRN---AKTHTKAKHTSLATYEMSTGFEAIFGYLDLAGASDRVQELIA 127
>gi|452972576|gb|EME72405.1| ribonuclease MrnC [Bacillus sonorensis L12]
Length = 138
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD + E+Y R H L ++ + + + V ++Q ++L L + +
Sbjct: 12 LNGLALAYMGDAVLEIYVRHHLLKQGMTKPNDLHKQSSRYVSAKSQASMLFALEEQGFFT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
EE+ V+R G+N S + Y +++ E + GYL+L RLE+++ K
Sbjct: 72 EEEKAVLRRGRNAKSGT--VPKNTDVQTYRYSTAFEAVIGYLFLEKKEARLEELIKK 126
>gi|347543093|ref|YP_004857731.1| ribonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986130|dbj|BAK81805.1| ribonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 133
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 117 FNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
FN S+AYIGDC+YE+Y R + L F + + + V+ V + Q+ + K+ YL
Sbjct: 15 FNILSIAYIGDCVYEMYFRNYMLRKFGYIDSNKLHLEVIKYVNAKFQNDIYYKI---KYL 71
Query: 175 SAEERD-VVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N + RT + Y A+ LE++ GYLY+ + RL+ + +
Sbjct: 72 FGEEENYYFKRGRN---SKVRTIPKNCSVGNYKTATGLESIVGYLYMVGDFKRLDFIFDE 128
Query: 232 L 232
+
Sbjct: 129 I 129
>gi|239625542|ref|ZP_04668573.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519772|gb|EEQ59638.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 155
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R + + + + + R +V+ TQ AL++ + + L+ EE
Sbjct: 7 LAYIGDAVYELMIRSRVVNHGSMQVNKMHKRSAGLVKAGTQAALIRAI--EDLLTEEEHA 64
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V + G+N S T + A Y A+ LE LAG+L+L
Sbjct: 65 VYKRGRNAKSVT--TAKNASVIDYRTATGLEALAGWLFL 101
>gi|75760640|ref|ZP_00740669.1| Hypothetical protein RBTH_06014 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491883|gb|EAO55070.1| Hypothetical protein RBTH_06014 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 141
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL S+L+
Sbjct: 13 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETSFLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 73 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 127
>gi|365924273|ref|ZP_09447036.1| hypothetical protein LmalK35_00130 [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420265689|ref|ZP_14768223.1| hypothetical protein LMA_04236 [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427440|gb|EJF00139.1| hypothetical protein LMA_04236 [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 134
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD IYE+Y R+H L L+ + ++ V + Q L +K+ + L+
Sbjct: 11 NGIALAYMGDAIYEVYVRKHLLAKGLTKPNHLHKTATHYVSAKAQSFLAEKMQKQNILNK 70
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
E + R G+N S +T K A Y ++ E L GYL+L+N
Sbjct: 71 TELEYFRRGRNAKS-HTSAKNTA-VITYRISTGFEALFGYLFLSN 113
>gi|125974551|ref|YP_001038461.1| hypothetical protein Cthe_2061 [Clostridium thermocellum ATCC
27405]
gi|256004090|ref|ZP_05429075.1| ribonuclease III [Clostridium thermocellum DSM 2360]
gi|281419075|ref|ZP_06250092.1| ribonuclease III [Clostridium thermocellum JW20]
gi|385779989|ref|YP_005689154.1| ribonuclease III [Clostridium thermocellum DSM 1313]
gi|419721334|ref|ZP_14248498.1| ribonuclease III [Clostridium thermocellum AD2]
gi|419726888|ref|ZP_14253908.1| ribonuclease III [Clostridium thermocellum YS]
gi|125714776|gb|ABN53268.1| ribonuclease III [Clostridium thermocellum ATCC 27405]
gi|255992013|gb|EEU02110.1| ribonuclease III [Clostridium thermocellum DSM 2360]
gi|281407224|gb|EFB37485.1| ribonuclease III [Clostridium thermocellum JW20]
gi|316941669|gb|ADU75703.1| ribonuclease III [Clostridium thermocellum DSM 1313]
gi|380769853|gb|EIC03753.1| ribonuclease III [Clostridium thermocellum YS]
gi|380782504|gb|EIC12138.1| ribonuclease III [Clostridium thermocellum AD2]
Length = 140
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE++ R + + + + R +A V+ + Q ++ +++ L+ EE +
Sbjct: 28 LAYIGDAVYEVFIRTMLVSGGNVPVHVLHKRSIAYVKAKAQSDIVHRIM--PLLTEEELN 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
+VR G+N SA + A Y A+ E+L G+LYL + +RL D++
Sbjct: 86 IVRRGRNAKSAT--VPKNADITDYRYATGFESLLGFLYLKKDYDRLMDIL 133
>gi|418197503|ref|ZP_12833968.1| hypothetical protein SPAR106_0589 [Streptococcus pneumoniae
GA47778]
gi|353864703|gb|EHE44614.1| hypothetical protein SPAR106_0589 [Streptococcus pneumoniae
GA47778]
Length = 128
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L + L
Sbjct: 6 LINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQVL 65
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ +E ++ + +N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 66 TEKEEEIYKRSRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>gi|228989299|ref|ZP_04149290.1| hypothetical protein bpmyx0001_760 [Bacillus pseudomycoides DSM
12442]
gi|228995482|ref|ZP_04155150.1| hypothetical protein bmyco0003_850 [Bacillus mycoides Rock3-17]
gi|228764211|gb|EEM13090.1| hypothetical protein bmyco0003_850 [Bacillus mycoides Rock3-17]
gi|228770377|gb|EEM18950.1| hypothetical protein bpmyx0001_760 [Bacillus pseudomycoides DSM
12442]
Length = 135
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ L ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGTVRPNQLHRLGTSFVSAKAQAKVVYHFLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY Y L N RLE+++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALLGYHYLLNNRERLEELVYK 121
>gi|423073154|ref|ZP_17061897.1| RNase3 domain protein [Desulfitobacterium hafniense DP7]
gi|361855984|gb|EHL07918.1| RNase3 domain protein [Desulfitobacterium hafniense DP7]
Length = 157
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
PRS NA +LAY+GD +YEL+ R H L + E + VR TQ LL +L
Sbjct: 2 PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL 61
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L +E VV G+N + ++ Y A+ E L GY LT
Sbjct: 62 --PHLDEQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVGYWQLTG 108
>gi|312135735|ref|YP_004003073.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
gi|311775786|gb|ADQ05273.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
Length = 151
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YEL+ R + P L+ Y R V+ +Q ++KL + L +E+
Sbjct: 25 AYIGDAVYELFVRNKIITENPNLTPYLYYLRTTMYVKASSQAIAIKKLYEE--LDEDEKR 82
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+V+ G+N R A + Y A++LETL GYLYL N RL ++S+
Sbjct: 83 IVKRGRNAKPKTI--PRNARLSDYKYATALETLIGYLYLENNIERLNYILSQ 132
>gi|15896404|ref|NP_349753.1| hypothetical protein CA_C3156 [Clostridium acetobutylicum ATCC 824]
gi|337738362|ref|YP_004637809.1| hypothetical protein SMB_G3192 [Clostridium acetobutylicum DSM
1731]
gi|384459872|ref|YP_005672292.1| hypothetical protein CEA_G3160 [Clostridium acetobutylicum EA 2018]
gi|15026222|gb|AAK81093.1|AE007810_12 Uncharacterized conserved protein, YACZ B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325510561|gb|ADZ22197.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291560|gb|AEI32694.1| hypothetical protein SMB_G3192 [Clostridium acetobutylicum DSM
1731]
Length = 141
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 109 KVGKPRSV-FNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALL 165
K K R+V N LA++GD +YE + R + + + +++ + + + V+ Q +
Sbjct: 9 KFTKTRAVQLNPLVLAFVGDAVYENFVRIYIVDKYDEMTVHRLHIKAIEFVKAHAQSTFM 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANR 224
+++ ++ L+ EE + + G+N SA + + A Y ++ E L GYLYLTN +R
Sbjct: 69 KEIYDE--LNEEEVRIYKRGRNAKSATS--PKNADICEYRASTGFEALIGYLYLTNQIDR 124
Query: 225 LEDVMSKL 232
L ++ K+
Sbjct: 125 LNFILEKV 132
>gi|89893194|ref|YP_516681.1| hypothetical protein DSY0448 [Desulfitobacterium hafniense Y51]
gi|122483937|sp|Q250Q5.1|MRNC_DESHY RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|89332642|dbj|BAE82237.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 157
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
PRS NA +LAY+GD +YEL+ R H L + E + VR TQ LL +L
Sbjct: 2 PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL 61
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L +E VV G+N + ++ Y A+ E L GY LT
Sbjct: 62 --PHLDEQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVGYWQLTG 108
>gi|229015493|ref|ZP_04172491.1| hypothetical protein bcere0030_890 [Bacillus cereus AH1273]
gi|229021702|ref|ZP_04178284.1| hypothetical protein bcere0029_810 [Bacillus cereus AH1272]
gi|423393456|ref|ZP_17370682.1| hypothetical protein ICG_05304 [Bacillus cereus BAG1X1-3]
gi|423480235|ref|ZP_17456925.1| hypothetical protein IEQ_00013 [Bacillus cereus BAG6X1-2]
gi|228739570|gb|EEL89984.1| hypothetical protein bcere0029_810 [Bacillus cereus AH1272]
gi|228745780|gb|EEL95784.1| hypothetical protein bcere0030_890 [Bacillus cereus AH1273]
gi|401149240|gb|EJQ56715.1| hypothetical protein IEQ_00013 [Bacillus cereus BAG6X1-2]
gi|401629563|gb|EJS47376.1| hypothetical protein ICG_05304 [Bacillus cereus BAG1X1-3]
Length = 135
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGTVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++LE L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTALEALIGYHHLLNNRERLDEIVYK 121
>gi|422697262|ref|ZP_16755207.1| RNase3 domain protein [Enterococcus faecalis TX1346]
gi|315174138|gb|EFU18155.1| RNase3 domain protein [Enterococcus faecalis TX1346]
Length = 132
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAGEMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS---- 230
EE + + G+N S + A Y A+ E+L GYL+LT RLE +++
Sbjct: 67 EEEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYLHLTQQKERLEKLINWCIK 124
Query: 231 KLGFTN 236
K+G TN
Sbjct: 125 KVGETN 130
>gi|423602380|ref|ZP_17578380.1| hypothetical protein III_05182 [Bacillus cereus VD078]
gi|401225919|gb|EJR32463.1| hypothetical protein III_05182 [Bacillus cereus VD078]
Length = 135
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL+ ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLDTAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|229159264|ref|ZP_04287288.1| hypothetical protein bcere0009_770 [Bacillus cereus R309803]
gi|228624156|gb|EEK80958.1| hypothetical protein bcere0009_770 [Bacillus cereus R309803]
Length = 135
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL +++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLENAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|387928131|ref|ZP_10130809.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387587717|gb|EIJ80039.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 141
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E Y R H L + + + V + Q ++ +LL + LS
Sbjct: 13 LNSLALAYMGDAVFEKYVRYHLLQSGKVKPHDLHRESTKYVSAKAQSQIIHQLLENGELS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
E VV+ G+N S + Y +++ E L GYL+L+ RLE+++
Sbjct: 73 DHEVAVVKRGRNAKSGT--VPKNTDVQTYRYSTAFEALLGYLFLSKQEKRLEEII 125
>gi|222152120|ref|YP_002561280.1| hypothetical protein MCCL_1877 [Macrococcus caseolyticus JCSC5402]
gi|222121249|dbj|BAH18584.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 136
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFP----PLSIEEYNNRVMAVVRCETQDALLQKLLN 170
S++N +LAY+GD + +LY R + + P + Y V ++Q L+
Sbjct: 6 SLYNPLTLAYLGDAVLDLYIRNYIVREKNRKPNELHRY---ATFFVSAKSQSQTFDTLVE 62
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
D++ + EE D++ G+N S +T+ K Y +++ LE + GYL+L + RL++++
Sbjct: 63 DNFFTTEEMDILMRGRNAKS-HTKAK-NTDVVTYKKSTGLEAVIGYLHLNEDKERLDELL 120
Query: 230 SKL 232
+++
Sbjct: 121 NEI 123
>gi|218283692|ref|ZP_03489653.1| hypothetical protein EUBIFOR_02247 [Eubacterium biforme DSM 3989]
gi|218215681|gb|EEC89219.1| hypothetical protein EUBIFOR_02247 [Eubacterium biforme DSM 3989]
Length = 128
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 118 NAASLAYIGDCIYELYARRHFL---FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
NA SLA+IGD + L R H L F + + N V + + Q +L K++ + +
Sbjct: 7 NATSLAWIGDAVMSLAVREHLLSLGFRKAHVLQKKNAV--ICSAKGQAIMLNKMMEEDFF 64
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
+ +E+ ++ G+N A +K + A Y A++LE++ GYLYL + RL+ + K+
Sbjct: 65 TEDEKTILARGRN---ATIHSKAKNATHKTYLEATALESMLGYLYLYGHQERLKVCLDKI 121
>gi|347522201|ref|YP_004779772.1| hypothetical protein LCGT_1595 [Lactococcus garvieae ATCC 49156]
gi|385833586|ref|YP_005871361.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343180769|dbj|BAK59108.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343182739|dbj|BAK61077.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 133
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAYIGD +YE++ R + L L+ E + V + Q AL++K+
Sbjct: 4 KDAELLNGVALAYIGDAVYEVFIRDYLLDKGLTKPGELQRQATQYVSAKAQAALIRKMEE 63
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLED 227
+L+ EE + G+N S T + Y ++ E + G+L+LT RLE+
Sbjct: 64 VDFLTEEELLYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGFLHLTKKTERLEE 119
>gi|423421743|ref|ZP_17398832.1| hypothetical protein IE3_05215 [Bacillus cereus BAG3X2-1]
gi|401096862|gb|EJQ04899.1| hypothetical protein IE3_05215 [Bacillus cereus BAG3X2-1]
Length = 141
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ + V + Q ++ LL ++L+
Sbjct: 13 LNSLALAYMGDAVYEQYIRYHLLQKGTVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++LE L GY + L N RL++++ K
Sbjct: 73 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTALEALIGYHHLLNNRERLDEIVYK 127
>gi|317495867|ref|ZP_07954230.1| RNase3 domain-containing protein [Gemella morbillorum M424]
gi|316914044|gb|EFV35527.1| RNase3 domain-containing protein [Gemella morbillorum M424]
Length = 143
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
A +LAYIGD IY++ +R + + L I + + V +V Q + ++ +L ++ L+
Sbjct: 22 ALALAYIGDSIYDIMSREYVMKNHLGKINDLHRTVSTLVSARAQASFMKHILENNILTDI 81
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMS 230
E + GKN N + A Y A+ LE + GYLYL N RLE++ +
Sbjct: 82 EESIYIRGKN--QKNNSKAKNASIMEYKLATGLEAVFGYLYLEKNFERLEEMFN 133
>gi|312865405|ref|ZP_07725632.1| RNase3 domain protein [Streptococcus downei F0415]
gi|311098923|gb|EFQ57140.1| RNase3 domain protein [Streptococcus downei F0415]
Length = 132
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y LY RR+ +F + +R+ V + Q L++ +L+
Sbjct: 7 NLINGIALAFEGDAVYSLYIRRYLIFQGQTKPNQLHRLATRYVSAKAQAMLIEAMLDGQL 66
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
L+ EE + + G+N A++ TK + Y +++ E + GYL++T +RLE++++
Sbjct: 67 LTQEEDAIYKRGRN---AHSHTKAKNTDILTYKKSTGFEAVLGYLHMTQQIDRLEELIN 122
>gi|310826701|ref|YP_003959058.1| ribonuclease III [Eubacterium limosum KIST612]
gi|308738435|gb|ADO36095.1| ribonuclease III [Eubacterium limosum KIST612]
Length = 139
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +Y Y RR + +S + + VR + Q + L++ L+
Sbjct: 21 LNPLTLAYIGDGVYSEYIRRFLVSGGISNVNHLTKESIKYVRADGQSKMALALMDS--LT 78
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE+ +VR G+N S + A Y A+ LE L GYL LT RLE++M +
Sbjct: 79 DEEQTIVRRGRNTRS---HVPKHARTIDYRYATGLEALVGYLELTGQKERLEELMVR 132
>gi|242372748|ref|ZP_04818322.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
gi|242349521|gb|EES41122.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
Length = 129
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L++L++D
Sbjct: 6 LLNPLTLAYMGDAVLDQHIREYIV---LKLQSKPNRLHQVSKQYVSAKSQAQTLERLISD 62
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+ + EE +V++ G+N A + TK + Y ++S+LE + G+LYL + RLE+++
Sbjct: 63 DWFTEEELNVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQQTRLEELL 119
Query: 230 SKL 232
+
Sbjct: 120 HNI 122
>gi|51894253|ref|YP_076944.1| hypothetical protein STH3118 [Symbiobacterium thermophilum IAM
14863]
gi|81387918|sp|Q67JQ0.1|MRNC_SYMTH RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|51857942|dbj|BAD42100.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 130
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YE + R L + + + + + V+ Q A+L L+ L+ +E+
Sbjct: 13 TLAYLGDALYEAFVRERLLERGYVRVNDLHRHALRYVQATAQAAILHHLM--PALTEQEQ 70
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
DVVR G+N + + A A Y ++ E L GYLYL A RL +V+
Sbjct: 71 DVVRRGRN--AKGHGAPKSADPAEYAASTGFEALVGYLYLAGQAERLSEVLQ 120
>gi|312792754|ref|YP_004025677.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
gi|344997054|ref|YP_004799397.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
gi|312179894|gb|ADQ40064.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
gi|343965273|gb|AEM74420.1| ribonuclease III [Caldicellulosiruptor lactoaceticus 6A]
Length = 146
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YEL+ R + P L+ Y R V+ +Q ++KL + L +E+
Sbjct: 22 AYIGDAVYELFVRNKIIAENPDLTPYLYYLRTTMYVKASSQAMAIKKLYEE--LDEDEKR 79
Query: 181 VVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+V+ G+N A +T R A + Y A++LE L GYLYL N RL ++S+
Sbjct: 80 IVKRGRN---AKPKTIPRNAKLSDYKYATALEALIGYLYLANNIERLNYILSQ 129
>gi|415886299|ref|ZP_11548122.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387588952|gb|EIJ81273.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 141
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E Y R H L + + + V + Q ++ +L+ + LS
Sbjct: 13 LNSLALAYMGDAVFEQYVRYHLLQSGRVKPHQLHREATKYVSAKAQSQIIHQLIENGELS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
E VV+ G+N S + Y +++ E L GYL+L+ RLE++++
Sbjct: 73 DHEVAVVKRGRNAKSGT--VPKNTDVQTYRYSTAFEALIGYLFLSKQEERLEEIIT 126
>gi|163938098|ref|YP_001642982.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|229131098|ref|ZP_04260010.1| hypothetical protein bcere0014_760 [Bacillus cereus BDRD-ST196]
gi|229165079|ref|ZP_04292874.1| hypothetical protein bcere0007_760 [Bacillus cereus AH621]
gi|423485390|ref|ZP_17462072.1| hypothetical protein IEU_00013 [Bacillus cereus BtB2-4]
gi|423491115|ref|ZP_17467759.1| hypothetical protein IEW_00013 [Bacillus cereus CER057]
gi|423502089|ref|ZP_17478706.1| hypothetical protein IEY_05316 [Bacillus cereus CER074]
gi|423514645|ref|ZP_17491152.1| hypothetical protein IG3_06118 [Bacillus cereus HuA2-1]
gi|423514943|ref|ZP_17491424.1| hypothetical protein IG7_00013 [Bacillus cereus HuA2-4]
gi|423596980|ref|ZP_17572990.1| hypothetical protein IIG_05827 [Bacillus cereus VD048]
gi|423671540|ref|ZP_17646544.1| hypothetical protein IKO_04818 [Bacillus cereus VDM034]
gi|423672656|ref|ZP_17647595.1| hypothetical protein IKS_00199 [Bacillus cereus VDM062]
gi|163860295|gb|ABY41354.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|228618342|gb|EEK75372.1| hypothetical protein bcere0007_760 [Bacillus cereus AH621]
gi|228652311|gb|EEL08236.1| hypothetical protein bcere0014_760 [Bacillus cereus BDRD-ST196]
gi|401151483|gb|EJQ58934.1| hypothetical protein IEY_05316 [Bacillus cereus CER074]
gi|401162040|gb|EJQ69399.1| hypothetical protein IEW_00013 [Bacillus cereus CER057]
gi|401168444|gb|EJQ75707.1| hypothetical protein IG7_00013 [Bacillus cereus HuA2-4]
gi|401218157|gb|EJR24841.1| hypothetical protein IIG_05827 [Bacillus cereus VD048]
gi|401291929|gb|EJR97594.1| hypothetical protein IKO_04818 [Bacillus cereus VDM034]
gi|401311516|gb|EJS16811.1| hypothetical protein IKS_00199 [Bacillus cereus VDM062]
gi|402441581|gb|EJV73531.1| hypothetical protein IEU_00013 [Bacillus cereus BtB2-4]
gi|402442045|gb|EJV73989.1| hypothetical protein IG3_06118 [Bacillus cereus HuA2-1]
Length = 135
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGTVRPNQLHRLGTGFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|299821034|ref|ZP_07052922.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299816699|gb|EFI83935.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 133
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAY+GD IYE+Y R + L P + + R V + Q LQ+++
Sbjct: 10 LNGLALAYMGDAIYEVYIREYLLASGKTKPNGLHKAATR---FVSAKGQAFSLQEMMETG 66
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
+L+ EE + G+N S + + +YN +++ E + GYL+L RL +VM K
Sbjct: 67 FLTEEEMSYAKRGRNAKSYS--IPKNVDPKIYNLSTAFEAVIGYLHLAEEETRLTEVMEK 124
>gi|420143369|ref|ZP_14650870.1| Hypothetical protein Y7C_90744 [Lactococcus garvieae IPLA 31405]
gi|391856888|gb|EIT67424.1| Hypothetical protein Y7C_90744 [Lactococcus garvieae IPLA 31405]
Length = 133
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAYIGD +YE++ R + L L+ E + V + Q AL++K+
Sbjct: 4 KDAELLNGVALAYIGDAVYEVFIRDYLLDKGLTKPGELQRQATQYVSAKAQAALIRKMEE 63
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLED 227
+L+ EE + G+N S T + Y ++ E + G+L+LT RLE+
Sbjct: 64 VDFLTEEELLYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGFLHLTKKIERLEE 119
>gi|28896584|ref|NP_802934.1| hypothetical protein SPs1672 [Streptococcus pyogenes SSI-1]
gi|28811838|dbj|BAC64767.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 129
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LA+ GD +Y Y RRH +F P + R V + Q L+Q +L
Sbjct: 1 MINGIALAFEGDAVYSYYVRRHLIFQGKTKPSQLHRLATR---YVSAKAQANLIQAMLEA 57
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYL-YLTNANRLEDVM 229
L+ +E D+ + G+N N+ TK + A Y ++ E + GYL + RLE+++
Sbjct: 58 QLLTEKEEDIYKRGRNT---NSHTKAKNADIITYRMSTGFEAIMGYLDMMGQKERLEELI 114
>gi|419760953|ref|ZP_14287214.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407513858|gb|EKF48731.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 126
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAY+GD ++ L+ + + F S++ + +V + Q LL K+L L+ EE+
Sbjct: 20 SLAYLGDAVFNLFVKVLY-FKNTSVKNLHKDSQLLVNRKFQSTLLDKVL--PLLNEEEKA 76
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
V+ G N A R Y +++ E L GYLYLTN RL +++
Sbjct: 77 FVKRGINSKGAG----RYGNDPAYRKSTGFEVLVGYLYLTNQERLYNLL 121
>gi|333397298|ref|ZP_08479111.1| ribonuclease III [Leuconostoc gelidum KCTC 3527]
gi|406600578|ref|YP_006745924.1| ribonuclease III [Leuconostoc gelidum JB7]
gi|406372113|gb|AFS41038.1| ribonuclease III [Leuconostoc gelidum JB7]
Length = 135
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H L L+ + + R V + AL ++ DS L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLLSLGLTKVNDLQKRSKHYVSAKAHAALFACMIADSLLTD 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
E + G+N A + TK + Y ++ +E L G+L+L+ R+ ++M
Sbjct: 70 NELIYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGFLHLSGQPERISELM 121
>gi|229009600|ref|ZP_04166826.1| hypothetical protein bmyco0001_760 [Bacillus mycoides DSM 2048]
gi|229053937|ref|ZP_04195371.1| hypothetical protein bcere0026_770 [Bacillus cereus AH603]
gi|423370673|ref|ZP_17348078.1| hypothetical protein IC3_05747 [Bacillus cereus VD142]
gi|423665396|ref|ZP_17640535.1| hypothetical protein IKM_05812 [Bacillus cereus VDM022]
gi|228721355|gb|EEL72876.1| hypothetical protein bcere0026_770 [Bacillus cereus AH603]
gi|228751622|gb|EEM01422.1| hypothetical protein bmyco0001_760 [Bacillus mycoides DSM 2048]
gi|401073409|gb|EJP81831.1| hypothetical protein IC3_05747 [Bacillus cereus VD142]
gi|401290303|gb|EJR95998.1| hypothetical protein IKM_05812 [Bacillus cereus VDM022]
Length = 135
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|229194481|ref|ZP_04321284.1| hypothetical protein bcere0001_770 [Bacillus cereus m1293]
gi|423578057|ref|ZP_17554176.1| hypothetical protein II9_05278 [Bacillus cereus MSX-D12]
gi|228588947|gb|EEK46962.1| hypothetical protein bcere0001_770 [Bacillus cereus m1293]
gi|401203637|gb|EJR10473.1| hypothetical protein II9_05278 [Bacillus cereus MSX-D12]
Length = 135
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIIYK 121
>gi|297205035|ref|ZP_06922431.1| ribonuclease III [Lactobacillus jensenii JV-V16]
gi|297149613|gb|EFH29910.1| ribonuclease III [Lactobacillus jensenii JV-V16]
Length = 147
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 110 VGKPRSVF---------NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCE 159
+GK + +F N +LAY+GD +YE+Y RRH L + + R V +
Sbjct: 1 MGKIKQLFEKKINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK 60
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q AL+ K+ +D L+ E + G+N S +T K A Y ++ E + GYL L
Sbjct: 61 AQAALITKMQDDQILTEAELATFKRGRNAKS-HTHAK-NTKVATYKLSTGFEAIFGYLEL 118
Query: 220 TNAN-RLEDVMS 230
+ R+E++ +
Sbjct: 119 LDKQERIEELAT 130
>gi|403669825|ref|ZP_10935001.1| hypothetical protein KJC8E_13331 [Kurthia sp. JC8E]
Length = 139
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 110 VGKPRSV----FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQ 161
+G+ R++ NA +LAY+GD + E+ R H L P + ++ V + Q
Sbjct: 1 MGELRNIDVKQLNALALAYMGDAVLEIAIREHLLRAGRVKPKVL---HHEATHYVSAKAQ 57
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
++ K++++ Y + EE V+R G+N S + + YN +S+ E + G+L+LT
Sbjct: 58 AMVVHKMMDEQYFTEEELAVLRRGRNAKSGS--VPKNTDVQTYNYSSAFEAVLGFLHLTG 115
Query: 222 ANRLED 227
D
Sbjct: 116 QKERAD 121
>gi|282882305|ref|ZP_06290936.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297855|gb|EFA90320.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 137
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N+ +LAY+GD ++EL R L + + + + + V+ + Q L++K+L LS
Sbjct: 23 LNSLALAYVGDAVFELLVRTMVLKGNIPAHKLHTKSIKYVQAKGQKELIEKVLQS--LSE 80
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
EE V GKN + G Y A+ LE L GYLYL +RL+ V+ G
Sbjct: 81 EELGVYNRGKNSKPHTVAKNQTLGD--YMEATGLEALFGYLYLL--DRLDRVVEIFG 133
>gi|423556913|ref|ZP_17533216.1| hypothetical protein II3_02118 [Bacillus cereus MC67]
gi|401194228|gb|EJR01220.1| hypothetical protein II3_02118 [Bacillus cereus MC67]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|256852090|ref|ZP_05557477.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661340|ref|ZP_05862253.1| ribonuclease III family protein [Lactobacillus jensenii 115-3-CHN]
gi|256615502|gb|EEU20692.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547795|gb|EEX23772.1| ribonuclease III family protein [Lactobacillus jensenii 115-3-CHN]
Length = 147
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 110 VGKPRSVF---------NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCE 159
+GK + +F N +LAY+GD +YE+Y RRH L + + R V +
Sbjct: 1 MGKIKQLFEKNINPDTLNGQTLAYLGDAVYEIYIRRHLLKGGVVRPQVLQRDATHYVSAK 60
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q AL+ K+ +D L+ E + G+N S +T K A Y ++ E + GYL L
Sbjct: 61 AQAALITKMQDDQILTEAELATFKRGRNAKS-HTHAK-NTKVATYKLSTGFEAIFGYLEL 118
Query: 220 TNAN-RLEDVMS 230
+ R+E++ +
Sbjct: 119 LDKQERIEELAT 130
>gi|423526407|ref|ZP_17502856.1| hypothetical protein IGC_05766 [Bacillus cereus HuA4-10]
gi|401163457|gb|EJQ70803.1| hypothetical protein IGC_05766 [Bacillus cereus HuA4-10]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTGFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|336427888|ref|ZP_08607879.1| hypothetical protein HMPREF0994_03885 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336008637|gb|EGN38650.1| hypothetical protein HMPREF0994_03885 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 146
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 19/117 (16%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYN---NRVMA----VVRCETQDALLQKLLNDSY 173
+LA++GDCIY+L R + +E +N NR+ +V+ +TQ AL+ + S+
Sbjct: 29 TLAFVGDCIYDLIIR------TVVVECHNASPNRLHKEKSRLVKAQTQ-ALMGDAIQ-SF 80
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
L+ EE+ V R G+N S T + A Y +A++LE L GYLYL +R++ +M
Sbjct: 81 LTPEEQAVFRRGRNAKSYTT--AKNATVGDYRKATALEALYGYLYLD--DRMDRLME 133
>gi|229142897|ref|ZP_04271338.1| hypothetical protein bcere0012_780 [Bacillus cereus BDRD-ST24]
gi|228640518|gb|EEK96907.1| hypothetical protein bcere0012_780 [Bacillus cereus BDRD-ST24]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDVVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|217076397|ref|YP_002334113.1| ribonuclease III [Thermosipho africanus TCF52B]
gi|217036250|gb|ACJ74772.1| ribonuclease III family protein [Thermosipho africanus TCF52B]
Length = 126
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAY+GD ++ L+ + + F S++ + +V + Q LL K+L L+ EE+
Sbjct: 20 SLAYLGDAVFNLFVKVLY-FKNTSVKNLHKDSQLLVNRKFQSTLLDKVL--PLLNEEEKA 76
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
V+ G N A R Y +++ E L GYLYLTN RL +++
Sbjct: 77 FVKRGINSKGAG----RYGNDPAYRKSTGFEALVGYLYLTNQERLYNLL 121
>gi|306819815|ref|ZP_07453470.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|402309142|ref|ZP_10828138.1| ribonuclease III domain protein [Eubacterium sp. AS15]
gi|304552184|gb|EFM40120.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|400373261|gb|EJP26195.1| ribonuclease III domain protein [Eubacterium sp. AS15]
Length = 136
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N SLAYIGD ++E+Y R +F + + ++ +V+ ++Q +++ L ++ +
Sbjct: 17 INTLSLAYIGDSVWEMYVRNFVIFKNKHSKVNKLHHISTGLVKAKSQAQMVKDLKDNDII 76
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ DVV G+N S + A YN A+ E L GYLY+ + +L+++ S
Sbjct: 77 DEKMWDVVLRGRNSAS---NPPKNADIQDYNYATGFEALIGYLYIIKDFAKLDEIAS 130
>gi|317132606|ref|YP_004091920.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
gi|315470585|gb|ADU27189.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
Length = 142
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
F+ +LA+IGD +YEL AR L + + + ++R + VR + Q LL L
Sbjct: 18 FSPLALAFIGDAVYELLARGQVLAGGSAPVGKLHHRTVGFVRADAQAQAAHVLL--PLLD 75
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
E V+R G+N +A+ + A Y A+ LE L GYLYLT +RL + +
Sbjct: 76 EAEIAVLRRGRNANTAH--VAKHADPIDYRYATGLEALFGYLYLTGRTDRLRQLFA 129
>gi|30260281|ref|NP_842658.1| hypothetical protein BA_0090 [Bacillus anthracis str. Ames]
gi|42779171|ref|NP_976418.1| hypothetical protein BCE_0090 [Bacillus cereus ATCC 10987]
gi|47525345|ref|YP_016694.1| hypothetical protein GBAA_0090 [Bacillus anthracis str. 'Ames
Ancestor']
gi|47569825|ref|ZP_00240495.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241]
gi|49183124|ref|YP_026376.1| hypothetical protein BAS0090 [Bacillus anthracis str. Sterne]
gi|49479930|ref|YP_034443.1| hypothetical protein BT9727_0087 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52145125|ref|YP_081702.1| hypothetical protein BCZK0086 [Bacillus cereus E33L]
gi|165873142|ref|ZP_02217758.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635024|ref|ZP_02393341.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167641956|ref|ZP_02400191.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170689561|ref|ZP_02880747.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170707499|ref|ZP_02897952.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177655586|ref|ZP_02936967.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568963|ref|ZP_03021864.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196041782|ref|ZP_03109072.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|196047742|ref|ZP_03114941.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|206972257|ref|ZP_03233204.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|206978369|ref|ZP_03239242.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217957666|ref|YP_002336210.1| hypothetical protein BCAH187_A0121 [Bacillus cereus AH187]
gi|218234559|ref|YP_002364940.1| hypothetical protein BCB4264_A0111 [Bacillus cereus B4264]
gi|218901293|ref|YP_002449127.1| hypothetical protein BCAH820_0101 [Bacillus cereus AH820]
gi|222093861|ref|YP_002527911.1| yazc [Bacillus cereus Q1]
gi|225862143|ref|YP_002747521.1| hypothetical protein BCA_0119 [Bacillus cereus 03BB102]
gi|227812764|ref|YP_002812773.1| hypothetical protein BAMEG_0106 [Bacillus anthracis str. CDC 684]
gi|228912830|ref|ZP_04076477.1| hypothetical protein bthur0012_790 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228919041|ref|ZP_04082420.1| hypothetical protein bthur0011_770 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228925344|ref|ZP_04088440.1| hypothetical protein bthur0010_780 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931593|ref|ZP_04094499.1| hypothetical protein bthur0009_860 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228937393|ref|ZP_04100039.1| hypothetical protein bthur0008_780 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228943897|ref|ZP_04106282.1| hypothetical protein bthur0007_780 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228950639|ref|ZP_04112773.1| hypothetical protein bthur0006_790 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228956532|ref|ZP_04118328.1| hypothetical protein bthur0005_780 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228970279|ref|ZP_04130938.1| hypothetical protein bthur0003_770 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976849|ref|ZP_04137261.1| hypothetical protein bthur0002_770 [Bacillus thuringiensis Bt407]
gi|228983346|ref|ZP_04143559.1| hypothetical protein bthur0001_770 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229040996|ref|ZP_04189759.1| hypothetical protein bcere0027_770 [Bacillus cereus AH676]
gi|229067856|ref|ZP_04201173.1| hypothetical protein bcere0025_800 [Bacillus cereus F65185]
gi|229077386|ref|ZP_04210046.1| hypothetical protein bcere0023_1010 [Bacillus cereus Rock4-2]
gi|229089222|ref|ZP_04220503.1| hypothetical protein bcere0021_770 [Bacillus cereus Rock3-42]
gi|229107777|ref|ZP_04237413.1| hypothetical protein bcere0018_780 [Bacillus cereus Rock1-15]
gi|229119753|ref|ZP_04249014.1| hypothetical protein bcere0016_780 [Bacillus cereus 95/8201]
gi|229136937|ref|ZP_04265564.1| hypothetical protein bcere0013_810 [Bacillus cereus BDRD-ST26]
gi|229148500|ref|ZP_04276756.1| hypothetical protein bcere0011_780 [Bacillus cereus m1550]
gi|229153869|ref|ZP_04281999.1| hypothetical protein bcere0010_760 [Bacillus cereus ATCC 4342]
gi|229176691|ref|ZP_04304095.1| hypothetical protein bcere0005_780 [Bacillus cereus 172560W]
gi|229182485|ref|ZP_04309736.1| hypothetical protein bcere0004_780 [Bacillus cereus BGSC 6E1]
gi|229188376|ref|ZP_04315424.1| hypothetical protein bcere0002_780 [Bacillus cereus ATCC 10876]
gi|229602972|ref|YP_002864742.1| hypothetical protein BAA_0106 [Bacillus anthracis str. A0248]
gi|254684406|ref|ZP_05148266.1| hypothetical protein BantC_11161 [Bacillus anthracis str.
CNEVA-9066]
gi|254724231|ref|ZP_05186016.1| hypothetical protein BantA1_17448 [Bacillus anthracis str. A1055]
gi|254733755|ref|ZP_05191470.1| hypothetical protein BantWNA_01112 [Bacillus anthracis str. Western
North America USA6153]
gi|254744607|ref|ZP_05202286.1| hypothetical protein BantKB_27001 [Bacillus anthracis str. Kruger
B]
gi|254756311|ref|ZP_05208340.1| hypothetical protein BantV_27932 [Bacillus anthracis str. Vollum]
gi|254758389|ref|ZP_05210416.1| hypothetical protein BantA9_08765 [Bacillus anthracis str.
Australia 94]
gi|296500925|ref|YP_003662625.1| hypothetical protein BMB171_C0087 [Bacillus thuringiensis BMB171]
gi|300119598|ref|ZP_07057142.1| hypothetical protein BCSJ1_28272 [Bacillus cereus SJ1]
gi|301051828|ref|YP_003790039.1| ribonuclease III family protein [Bacillus cereus biovar anthracis
str. CI]
gi|365164065|ref|ZP_09360151.1| hypothetical protein HMPREF1014_05614 [Bacillus sp. 7_6_55CFAA_CT2]
gi|375282188|ref|YP_005102623.1| hypothetical protein BCN_0090 [Bacillus cereus NC7401]
gi|376264118|ref|YP_005116830.1| Ribonuclease III family protein [Bacillus cereus F837/76]
gi|384177996|ref|YP_005563758.1| hypothetical protein YBT020_00435 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|384184175|ref|YP_005570071.1| hypothetical protein CT43_CH0087 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|386733957|ref|YP_006207138.1| cysteinyl-tRNA synthetase [Bacillus anthracis str. H9401]
gi|402554323|ref|YP_006595594.1| hypothetical protein BCK_07425 [Bacillus cereus FRI-35]
gi|410672462|ref|YP_006924833.1| putative ribonuclease MrnC [Bacillus thuringiensis Bt407]
gi|421510416|ref|ZP_15957309.1| hypothetical protein B353_22357 [Bacillus anthracis str. UR-1]
gi|421640504|ref|ZP_16081086.1| hypothetical protein BABF1_25884 [Bacillus anthracis str. BF1]
gi|423357618|ref|ZP_17335213.1| hypothetical protein IAU_05662 [Bacillus cereus IS075]
gi|423376317|ref|ZP_17353631.1| hypothetical protein IC5_05347 [Bacillus cereus AND1407]
gi|423387423|ref|ZP_17364677.1| hypothetical protein ICE_05167 [Bacillus cereus BAG1X1-2]
gi|423399364|ref|ZP_17376562.1| hypothetical protein ICU_05055 [Bacillus cereus BAG2X1-1]
gi|423409860|ref|ZP_17387009.1| hypothetical protein ICY_04545 [Bacillus cereus BAG2X1-3]
gi|423416009|ref|ZP_17393129.1| hypothetical protein IE1_05313 [Bacillus cereus BAG3O-2]
gi|423422324|ref|ZP_17399355.1| hypothetical protein IE5_00013 [Bacillus cereus BAG3X2-2]
gi|423428197|ref|ZP_17405201.1| hypothetical protein IE7_00013 [Bacillus cereus BAG4O-1]
gi|423439454|ref|ZP_17416392.1| hypothetical protein IE9_05592 [Bacillus cereus BAG4X12-1]
gi|423507883|ref|ZP_17484450.1| hypothetical protein IG1_05424 [Bacillus cereus HD73]
gi|423526611|ref|ZP_17503056.1| hypothetical protein IGE_00163 [Bacillus cereus HuB1-1]
gi|423553975|ref|ZP_17530302.1| hypothetical protein IGW_04606 [Bacillus cereus ISP3191]
gi|423572082|ref|ZP_17548296.1| hypothetical protein II7_05272 [Bacillus cereus MSX-A12]
gi|423578498|ref|ZP_17554609.1| hypothetical protein IIA_00013 [Bacillus cereus VD014]
gi|423590622|ref|ZP_17566684.1| hypothetical protein IIE_06009 [Bacillus cereus VD045]
gi|423608084|ref|ZP_17583977.1| hypothetical protein IIK_04665 [Bacillus cereus VD102]
gi|423614619|ref|ZP_17590476.1| hypothetical protein IIM_05330 [Bacillus cereus VD107]
gi|423632000|ref|ZP_17607746.1| hypothetical protein IK5_04849 [Bacillus cereus VD154]
gi|423638094|ref|ZP_17613746.1| hypothetical protein IK7_04502 [Bacillus cereus VD156]
gi|423645090|ref|ZP_17620706.1| hypothetical protein IK9_05033 [Bacillus cereus VD166]
gi|423646226|ref|ZP_17621796.1| hypothetical protein IKA_00013 [Bacillus cereus VD169]
gi|423653025|ref|ZP_17628324.1| hypothetical protein IKG_00013 [Bacillus cereus VD200]
gi|449086757|ref|YP_007419198.1| hypothetical protein HD73_0090 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452196468|ref|YP_007476549.1| Ribonuclease III family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|30253602|gb|AAP24144.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|42735086|gb|AAS39026.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|47500493|gb|AAT29169.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|47553518|gb|EAL11899.1| cysteinyl-tRNA synthetase [Bacillus cereus G9241]
gi|49177051|gb|AAT52427.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|49331486|gb|AAT62132.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51978594|gb|AAU20144.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|164711122|gb|EDR16683.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167510087|gb|EDR85498.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167529498|gb|EDR92248.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170127495|gb|EDS96369.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170666474|gb|EDT17251.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172080050|gb|EDT65148.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190559887|gb|EDV13871.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196021420|gb|EDX60128.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196027402|gb|EDX66019.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|206732831|gb|EDZ50006.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|206743430|gb|EDZ54864.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217062893|gb|ACJ77143.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|218162516|gb|ACK62508.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|218538335|gb|ACK90733.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|221237909|gb|ACM10619.1| YazC [Bacillus cereus Q1]
gi|225787483|gb|ACO27700.1| conserved hypothetical protein [Bacillus cereus 03BB102]
gi|227005532|gb|ACP15275.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|228595050|gb|EEK52821.1| hypothetical protein bcere0002_780 [Bacillus cereus ATCC 10876]
gi|228600940|gb|EEK58509.1| hypothetical protein bcere0004_780 [Bacillus cereus BGSC 6E1]
gi|228606734|gb|EEK64151.1| hypothetical protein bcere0005_780 [Bacillus cereus 172560W]
gi|228629550|gb|EEK86247.1| hypothetical protein bcere0010_760 [Bacillus cereus ATCC 4342]
gi|228634916|gb|EEK91489.1| hypothetical protein bcere0011_780 [Bacillus cereus m1550]
gi|228646475|gb|EEL02682.1| hypothetical protein bcere0013_810 [Bacillus cereus BDRD-ST26]
gi|228663654|gb|EEL19233.1| hypothetical protein bcere0016_780 [Bacillus cereus 95/8201]
gi|228675626|gb|EEL30834.1| hypothetical protein bcere0018_780 [Bacillus cereus Rock1-15]
gi|228694061|gb|EEL47743.1| hypothetical protein bcere0021_770 [Bacillus cereus Rock3-42]
gi|228705920|gb|EEL58246.1| hypothetical protein bcere0023_1010 [Bacillus cereus Rock4-2]
gi|228715215|gb|EEL67074.1| hypothetical protein bcere0025_800 [Bacillus cereus F65185]
gi|228727293|gb|EEL78487.1| hypothetical protein bcere0027_770 [Bacillus cereus AH676]
gi|228776336|gb|EEM24689.1| hypothetical protein bthur0001_770 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228782819|gb|EEM30985.1| hypothetical protein bthur0002_770 [Bacillus thuringiensis Bt407]
gi|228789388|gb|EEM37308.1| hypothetical protein bthur0003_770 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228803097|gb|EEM49919.1| hypothetical protein bthur0005_780 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228808990|gb|EEM55475.1| hypothetical protein bthur0006_790 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228815730|gb|EEM61966.1| hypothetical protein bthur0007_780 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228822226|gb|EEM68208.1| hypothetical protein bthur0008_780 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228828021|gb|EEM73749.1| hypothetical protein bthur0009_860 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834266|gb|EEM79807.1| hypothetical protein bthur0010_780 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228840566|gb|EEM85828.1| hypothetical protein bthur0011_770 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228846766|gb|EEM91771.1| hypothetical protein bthur0012_790 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229267380|gb|ACQ49017.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
gi|296321977|gb|ADH04905.1| hypothetical protein BMB171_C0087 [Bacillus thuringiensis BMB171]
gi|298723070|gb|EFI63968.1| hypothetical protein BCSJ1_28272 [Bacillus cereus SJ1]
gi|300373997|gb|ADK02901.1| ribonuclease III family protein [Bacillus cereus biovar anthracis
str. CI]
gi|324324080|gb|ADY19340.1| hypothetical protein YBT020_00435 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326937884|gb|AEA13780.1| hypothetical protein CT43_CH0087 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|358350711|dbj|BAL15883.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|363613366|gb|EHL64883.1| hypothetical protein HMPREF1014_05614 [Bacillus sp. 7_6_55CFAA_CT2]
gi|364509918|gb|AEW53317.1| Ribonuclease III family protein [Bacillus cereus F837/76]
gi|384383809|gb|AFH81470.1| Cysteinyl-tRNA synthetase [Bacillus anthracis str. H9401]
gi|401074484|gb|EJP82884.1| hypothetical protein IAU_05662 [Bacillus cereus IS075]
gi|401088774|gb|EJP96956.1| hypothetical protein IC5_05347 [Bacillus cereus AND1407]
gi|401094456|gb|EJQ02537.1| hypothetical protein IE1_05313 [Bacillus cereus BAG3O-2]
gi|401112808|gb|EJQ20682.1| hypothetical protein IE9_05592 [Bacillus cereus BAG4X12-1]
gi|401120041|gb|EJQ27842.1| hypothetical protein IE5_00013 [Bacillus cereus BAG3X2-2]
gi|401127119|gb|EJQ34848.1| hypothetical protein IE7_00013 [Bacillus cereus BAG4O-1]
gi|401182182|gb|EJQ89321.1| hypothetical protein IGW_04606 [Bacillus cereus ISP3191]
gi|401198804|gb|EJR05717.1| hypothetical protein II7_05272 [Bacillus cereus MSX-A12]
gi|401220259|gb|EJR26901.1| hypothetical protein IIE_06009 [Bacillus cereus VD045]
gi|401221223|gb|EJR27847.1| hypothetical protein IIA_00013 [Bacillus cereus VD014]
gi|401237463|gb|EJR43915.1| hypothetical protein IIM_05330 [Bacillus cereus VD107]
gi|401238767|gb|EJR45200.1| hypothetical protein IIK_04665 [Bacillus cereus VD102]
gi|401262719|gb|EJR68857.1| hypothetical protein IK5_04849 [Bacillus cereus VD154]
gi|401267785|gb|EJR73841.1| hypothetical protein IK9_05033 [Bacillus cereus VD166]
gi|401271818|gb|EJR77821.1| hypothetical protein IK7_04502 [Bacillus cereus VD156]
gi|401287855|gb|EJR93622.1| hypothetical protein IKA_00013 [Bacillus cereus VD169]
gi|401303133|gb|EJS08696.1| hypothetical protein IKG_00013 [Bacillus cereus VD200]
gi|401629006|gb|EJS46834.1| hypothetical protein ICE_05167 [Bacillus cereus BAG1X1-2]
gi|401644464|gb|EJS62154.1| hypothetical protein ICU_05055 [Bacillus cereus BAG2X1-1]
gi|401652400|gb|EJS69957.1| hypothetical protein ICY_04545 [Bacillus cereus BAG2X1-3]
gi|401795533|gb|AFQ09392.1| hypothetical protein BCK_07425 [Bacillus cereus FRI-35]
gi|401819498|gb|EJT18675.1| hypothetical protein B353_22357 [Bacillus anthracis str. UR-1]
gi|402442670|gb|EJV74591.1| hypothetical protein IG1_05424 [Bacillus cereus HD73]
gi|402455651|gb|EJV87432.1| hypothetical protein IGE_00163 [Bacillus cereus HuB1-1]
gi|403392320|gb|EJY89574.1| hypothetical protein BABF1_25884 [Bacillus anthracis str. BF1]
gi|409171591|gb|AFV15896.1| putative ribonuclease MrnC [Bacillus thuringiensis Bt407]
gi|449020514|gb|AGE75677.1| hypothetical protein HD73_0090 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452101861|gb|AGF98800.1| Ribonuclease III family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|30018361|ref|NP_829992.1| hypothetical protein BC0111 [Bacillus cereus ATCC 14579]
gi|229125608|ref|ZP_04254640.1| hypothetical protein bcere0015_780 [Bacillus cereus BDRD-Cer4]
gi|81436112|sp|Q81J58.1|MRNC_BACCR RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|29893901|gb|AAP07193.1| hypothetical protein BC_0111 [Bacillus cereus ATCC 14579]
gi|228657800|gb|EEL13606.1| hypothetical protein bcere0015_780 [Bacillus cereus BDRD-Cer4]
Length = 135
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|374709176|ref|ZP_09713610.1| ribonuclease III [Sporolactobacillus inulinus CASD]
Length = 142
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYL 174
N+ +LAY+GD + E+Y R+ + + + AV V + Q L +L+++ +L
Sbjct: 13 LNSLALAYMGDAVIEVYVRKMLIDHSGRTKPHALHAQAVDYVSAKAQCRFLHELMDEGFL 72
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
+ +E + VR G+N S + R YN ++ E L G L+L R++ +M K+
Sbjct: 73 TDDECNTVRRGRNAKSHS--VPRNTDVQTYNFSTGFEALIGTLFLEGKQERIDAIMEKM 129
>gi|65317551|ref|ZP_00390510.1| COG1939: Uncharacterized protein conserved in bacteria [Bacillus
anthracis str. A2012]
gi|118475861|ref|YP_893012.1| hypothetical protein BALH_0090 [Bacillus thuringiensis str. Al
Hakam]
gi|118415086|gb|ABK83505.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 141
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 13 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 73 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 127
>gi|70727477|ref|YP_254393.1| hypothetical protein SH2478 [Staphylococcus haemolyticus JCSC1435]
gi|68448203|dbj|BAE05787.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 131
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L
Sbjct: 8 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPNRLHQVSKSYVSAKSQAQTLETLFEM 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ + EE D+V+ G+N A + TK + Y ++S LE + GYLYL + RLE+++
Sbjct: 65 GWFTDEELDIVKRGRN---AKSHTKAKNTDIQTYRKSSGLEAVIGYLYLDHQEERLENLL 121
Query: 230 SKL 232
+
Sbjct: 122 DMI 124
>gi|403385688|ref|ZP_10927745.1| hypothetical protein KJC30_13370 [Kurthia sp. JC30]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 16/131 (12%)
Query: 110 VGKPRSV----FNAASLAYIGDCIYELYARRHFLF-----PPLSIEEYNNRVMAVVRCET 160
+G+ R V NA +LAY+GD + E+ R H L P + E + V A +
Sbjct: 1 MGELRDVDVKQVNALALAYMGDAVLEIAIREHLLRSGRVKPKVLHREATHYVSA----KA 56
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q +++K++++ + + EE ++R G+N S + + YN +S+ E + GYL+L
Sbjct: 57 QAMVIRKMIDEGFFTEEELAILRRGRNAKSGS--VPKNTDVQTYNYSSAFEAVLGYLHLL 114
Query: 221 N-ANRLEDVMS 230
R+E++++
Sbjct: 115 GRQQRVEEIIA 125
>gi|442805857|ref|YP_007374006.1| ribonuclease III [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442741707|gb|AGC69396.1| ribonuclease III [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 146
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++ L+ R + S + + + V+ Q ++ KL + L+ EE++
Sbjct: 19 LAFVGDAVFNLFIRSRLVMKKNESAHMMHVKAINYVKASAQSKIVSKLQDK--LNDEEKN 76
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
++R G+N SA + A Y RA++ E + GYLYL N RLE++++
Sbjct: 77 ILRRGRNTKSATI--PKHADVLDYRRATAFEAVLGYLYLLGMNERLEEILN 125
>gi|219666467|ref|YP_002456902.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|219536727|gb|ACL18466.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
Length = 150
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L + E + VR TQ LL +L +L
Sbjct: 1 MNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL--PHLD 58
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+E VV G+N + ++ Y A+ E L GY LT
Sbjct: 59 EQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVGYWQLTG 101
>gi|339634551|ref|YP_004726192.1| ribonuclease III [Weissella koreensis KACC 15510]
gi|420162182|ref|ZP_14668942.1| ribonuclease III [Weissella koreensis KCTC 3621]
gi|338854347|gb|AEJ23513.1| ribonuclease III [Weissella koreensis KACC 15510]
gi|394744616|gb|EJF33558.1| ribonuclease III [Weissella koreensis KCTC 3621]
Length = 141
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N LAY+GD +YE Y R+H L ++ + A V + AL + + D YL+
Sbjct: 10 LNGLDLAYLGDAVYETYIRQHLLAQGITKPGRLQRQAKAFVSAKAHAALFELMEADEYLT 69
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
E + G+N AN+ TK + Y ++ E L GYL+ + RL++V++
Sbjct: 70 ETELTFFKRGRN---ANSHTKAKNTDVVTYRISTGFEALIGYLHASQQFERLDEVVT 123
>gi|297545335|ref|YP_003677637.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296843110|gb|ADH61626.1| ribonuclease III [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 142
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD +Y LY R + ++ +R + V+ + Q ++K+ + LS EE+D
Sbjct: 28 LAFIGDAVYSLYIRTRIVAQKNQHVKFLHRETVKYVKAQAQAESIKKIYD--LLSEEEKD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYLTNA-NRLEDVMS 230
+VR G+N+ S NT K G V Y A+ E L GYLYL RL++++
Sbjct: 86 IVRRGRNIKS-NTTPK---GVEVQDYRYATGFEALLGYLYLAGEFERLKNILE 134
>gi|162447014|ref|YP_001620146.1| hypothetical protein ACL_0144 [Acholeplasma laidlawii PG-8A]
gi|380876943|sp|A9NEJ0.1|MRNC_ACHLI RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|161985121|gb|ABX80770.1| hypothetical protein ACL_0144 [Acholeplasma laidlawii PG-8A]
Length = 125
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YEL R++ + + ++ + + + + E Q +++ L+ LS
Sbjct: 1 MNGLALAYLGDAYYELEIRKYLITQGIRNVGKLHTEKVRLASNEAQASIMNYFLSLEILS 60
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
EE D + G+N S N+R ++ Y +A+ E+L GYL + + R +D+++ LG T
Sbjct: 61 EEEIDAYKKGRNK-SHNSR--KQMDMVTYQQATGFESLIGYLSIIDEQRAKDLIN-LGIT 116
>gi|153952841|ref|YP_001393606.1| hypothetical protein CKL_0202 [Clostridium kluyveri DSM 555]
gi|219853506|ref|YP_002470628.1| hypothetical protein CKR_0163 [Clostridium kluyveri NBRC 12016]
gi|146345722|gb|EDK32258.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219567230|dbj|BAH05214.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 141
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LA++GD +Y++ R + + F +S+ + + + V+ +Q ++++L + LS
Sbjct: 19 NPLTLAFVGDAVYDVLVRTYLINKFQSISVHNLHVKAIKFVKAHSQSEIIKRL--EKQLS 76
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
EE + G+N S + A Y A+ ETL G+LYLT
Sbjct: 77 EEELYFFKRGRNAKSGT--VPKNADIQEYRFATGFETLIGFLYLT 119
>gi|336053559|ref|YP_004561846.1| RNase3 domain-containing protein [Lactobacillus kefiranofaciens
ZW3]
gi|333956936|gb|AEG39744.1| RNase3 domain protein [Lactobacillus kefiranofaciens ZW3]
Length = 147
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVKGGIVRPQVLQREATHYVSAKAQAALVTKMQDEQMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN 223
+E R G+N A T TK + Y ++ E + GYL L N N
Sbjct: 77 DQELTAFRRGRN---AKTHTKAKHTSLKTYQLSTGFEAMLGYLDLLNKN 122
>gi|345021351|ref|ZP_08784964.1| hypothetical protein OTW25_08494 [Ornithinibacillus scapharcae
TW25]
Length = 132
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD I+E++ R H L + + + + V + Q A+++ L L+ EE
Sbjct: 12 ALAYMGDAIFEVFVREHLLEKGTVKPNQLHQEAITFVSAKAQSAVIKNWLEQRILTEEEE 71
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+V G+N S + + VY +++ E L G+ YL N +RL +++
Sbjct: 72 RIVARGRNAKSGS--VPKNTSVQVYRYSTAFEALIGFHYLAKNESRLHELIQ 121
>gi|258513620|ref|YP_003189842.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257777325|gb|ACV61219.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 143
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +YEL R + + L ++ + + + VR Q +L L ++ L +E D
Sbjct: 28 LAYLGDAVYELAVREYLIRKGLCTVHKLHRSAVHYVRASAQAGVLHNL--ETILQNDELD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
V+R G+N + + Y +++LE+L GYLYL + +RL +++ K+
Sbjct: 86 VIRRGRNAKPGH--CPKGVSQEEYGYSTALESLIGYLYLRGDFSRLSELLEKV 136
>gi|452994663|emb|CCQ93773.1| Mini-ribonuclease 3 [Clostridium ultunense Esp]
Length = 147
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ NA +LAY+GD +YE+Y R + ++ + + V + Q L+++ +
Sbjct: 21 ALLNALTLAYLGDSVYEVYVRYTLIAQGKVNPHRLHREAIRFVAAKGQSRQLERIKEE-- 78
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232
L+ EE +VR +N S + + + A Y +A++ E L GYL+LT R+E+++ L
Sbjct: 79 LTTEEEAIVRRARN--SKPSHSPKHAVMKDYLQATAFEALIGYLFLTGKKERMEELID-L 135
Query: 233 GFTNGSSTQMILEEANSK 250
G IL+EA SK
Sbjct: 136 GIEE------ILKEAESK 147
>gi|399889683|ref|ZP_10775560.1| RNase3 domain-containing protein [Clostridium arbusti SL206]
Length = 139
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 122 LAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LA++GD IYE++ R + + + + + + + ++ V+ Q ++++L YL+ EE
Sbjct: 23 LAFVGDAIYEVFVRAYIVNENRDMHVHKLHVKAVSFVKAHAQSEFIKEVL--QYLTEEEL 80
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
+ + G+N S + + A Y A+ E L GYLYLT N
Sbjct: 81 SIYKRGRN--SKSGTVPKNADLCEYRAATGFEALFGYLYLTEQN 122
>gi|168187714|ref|ZP_02622349.1| ribonuclease III family protein [Clostridium botulinum C str.
Eklund]
gi|169294419|gb|EDS76552.1| ribonuclease III family protein [Clostridium botulinum C str.
Eklund]
Length = 137
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N LA++GD IYE++ R++ + +S + + + ++ V+ +Q +++++ L
Sbjct: 18 LNPLVLAFVGDAIYEVFVRQYLVEQNNDMSAHKLHVKAVSYVKAHSQSEIMKEI--KEIL 75
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
+ EE + + G+N S + A Y A+ E L G+LYLTN +RL ++M+
Sbjct: 76 TDEEERIFKRGRNAKSGT--VPKNADVREYRIATGFEALMGFLYLTNQLDRLNELMN 130
>gi|255994718|ref|ZP_05427853.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989]
gi|255993431|gb|EEU03520.1| cysteine--tRNA ligase [Eubacterium saphenum ATCC 49989]
Length = 143
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
NA LAY+GD +YE+ R+ + ++ + + + V +Q A K+L ++ L
Sbjct: 12 MNATQLAYMGDAVYEVKIRQMLISKSEQVDNLHTKAIEYVSAVSQ-ARAAKMLENT-LED 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK-LG 233
E++V R +N +TK + Y A++LE L GYLYLT R+++V++ +G
Sbjct: 70 VEKEVFRRARN---KKQKTKPKNVDHVTYKYATALEALLGYLYLTGDTLRMDEVIANIIG 126
Query: 234 FTNGSS 239
+G S
Sbjct: 127 MLDGHS 132
>gi|421189296|ref|ZP_15646615.1| ribonuclease III family protein [Oenococcus oeni AWRIB422]
gi|421191746|ref|ZP_15649016.1| ribonuclease III family protein [Oenococcus oeni AWRIB548]
gi|399970567|gb|EJO04858.1| ribonuclease III family protein [Oenococcus oeni AWRIB548]
gi|399974053|gb|EJO08217.1| ribonuclease III family protein [Oenococcus oeni AWRIB422]
Length = 134
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
FN SLA+IGD + EL R + L L+ + + +R V + L + + +L+
Sbjct: 8 FNGLSLAFIGDAVDELKIRTYLLSTGLTKVSDLQHRSKEFVSAKAHAKLFFLMEKEGFLT 67
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
EE D+ + G+N ++ TK + Y ++ +E L GYLYL ++RL +++
Sbjct: 68 EEESDIFKRGRN---SHPHTKAKNTDIVTYQISTGVEALLGYLYLNKESSRLNEII 120
>gi|407797870|ref|ZP_11144785.1| ribonuclease MrnC [Salimicrobium sp. MJ3]
gi|407017633|gb|EKE30390.1| ribonuclease MrnC [Salimicrobium sp. MJ3]
Length = 135
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +++LY R H L + +E + + V Q + ++ + D L +E
Sbjct: 14 ALAYMGDTVHDLYVREHLLQKGTIRPQELHQTAVRFVSAGAQAHVAKEWMEDEALDEQEA 73
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
DV R G+N S + + Y A++ E + GYLYL + +RL +++S
Sbjct: 74 DVFRRGRNAKSGS--IPKNTDVRTYRLATAFEAVLGYLYLDGDEDRLFELVS 123
>gi|407717718|ref|YP_006795123.1| ribonuclease III [Leuconostoc carnosum JB16]
gi|407241474|gb|AFT81124.1| ribonuclease III [Leuconostoc carnosum JB16]
Length = 135
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N SLAYIGD IYEL R+H + L+ + E R V + AL + + D L+
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLISLGLTKVNELQKRSKHYVSAKAHAALFELMGIDDVLTE 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
E + G+N A + TK + Y ++ +E L G+LYL+ R+ ++M+
Sbjct: 70 TELIYFKRGRN---AKSHTKAKNTDVITYRISTGVEALFGFLYLSQQQERVSELMT 122
>gi|421878474|ref|ZP_16309954.1| Ribonuclease III [Leuconostoc citreum LBAE C11]
gi|390447601|emb|CCF26074.1| Ribonuclease III [Leuconostoc citreum LBAE C11]
Length = 134
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYN---NRVMAVVRCETQDALLQKLLNDSYL 174
N SLAYIGD IYEL R+H L L I + N + V + AL + D+ L
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLL--SLGITKVNALQKQSKFYVSAKAHAALFNHMTTDNIL 67
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+ +E + G+N A + TK + Y ++ +E L GYLYL+ + R+ +M
Sbjct: 68 TEQELVYFKRGRN---AKSHTKAKNTDVVTYRISTGVEALFGYLYLSEQHERISQLM 121
>gi|291546869|emb|CBL19977.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp.
SR1/5]
Length = 141
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YEL R + + + + ++V+ Q +++ L + L+ EE+
Sbjct: 26 TLAYIGDGVYELVIRTILVKKANCPVNRLHKKASSLVKASAQSGMMEIL--EPLLTEEEK 83
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V R G+N SA + A A Y RA+ E L GYLYL
Sbjct: 84 SVYRRGRNAHSATM--AKHATMADYRRATGFEALMGYLYL 121
>gi|408790756|ref|ZP_11202369.1| Ribonuclease III family protein [Lactobacillus florum 2F]
gi|408519945|gb|EKK20058.1| Ribonuclease III family protein [Lactobacillus florum 2F]
Length = 140
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY GD +YE+Y R+H L L+ + V + Q L++ + D LS
Sbjct: 12 LNGIALAYFGDAVYEVYIRKHLLTTGLTKANQLQGTATRYVSAKAQAGLMKLMEQDQLLS 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
E D + G+N S + Y ++ E L GYL L+N
Sbjct: 72 VTEWDFFKRGRNAKSYT--HAKNTSVVTYRVSTGFEALFGYLELSN 115
>gi|326391117|ref|ZP_08212663.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
gi|345018554|ref|YP_004820907.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
gi|392939597|ref|ZP_10305241.1| hypothetical protein ThesiDRAFT1_0792 [Thermoanaerobacter
siderophilus SR4]
gi|325992816|gb|EGD51262.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
gi|344033897|gb|AEM79623.1| ribonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291347|gb|EIV99790.1| hypothetical protein ThesiDRAFT1_0792 [Thermoanaerobacter
siderophilus SR4]
Length = 142
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD +Y LY R S+ + + V+ ++Q ++++ + +L+ EE+D
Sbjct: 28 LAFIGDAVYSLYIRTMIAAKENRSVNFLHKETVKYVKAKSQAESVKRIYD--FLTEEEKD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYLTNA-NRLEDVM 229
VVR G+NV S NT K G V Y A+ E L GYLYL RL++++
Sbjct: 86 VVRRGRNVKS-NTMPK---GVEVQAYRYATGFEALLGYLYLAGEFERLKNIL 133
>gi|295692212|ref|YP_003600822.1| ribonuclease iii [Lactobacillus crispatus ST1]
gi|295030318|emb|CBL49797.1| Ribonuclease III [Lactobacillus crispatus ST1]
Length = 147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+E R G+N A + TK + Y ++ E + GYLYL N R+ D+
Sbjct: 77 DDELAAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLYLLGKNDRVADL 128
>gi|224542353|ref|ZP_03682892.1| hypothetical protein CATMIT_01532 [Catenibacterium mitsuokai DSM
15897]
gi|224524735|gb|EEF93840.1| RNase3 domain protein [Catenibacterium mitsuokai DSM 15897]
Length = 132
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
+ NA ++AY+GD ++E+Y R + L + E + V ++ L+ +
Sbjct: 4 ELMNALAVAYLGDAVFEVYVREYLLTEKGIMKPHELQRASIKYVSAYAHAGFMKYALSQN 63
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ + EE + + G+N + + K V+N++S E++ G+LYLT RL+++
Sbjct: 64 FFTEEEVRLFKRGRNCKGHSVKNK---SVVVHNQSSGFESMVGHLYLTKQTERLDEIFE 119
>gi|116491408|ref|YP_810952.1| ribonuclease III family protein [Oenococcus oeni PSU-1]
gi|116092133|gb|ABJ57287.1| Ribonuclease III family protein [Oenococcus oeni PSU-1]
Length = 134
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
FN SLA+IGD + EL R + L L+ + + +R V + L + + +L+
Sbjct: 8 FNGLSLAFIGDAVDELKIRTYLLSTGLTKVNDLQHRSKEFVSAKAHAKLFFLMEKEGFLT 67
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
EE D+ + G+N ++ TK + Y ++ +E L GYLYL ++RL +++
Sbjct: 68 EEESDIFKRGRN---SHPHTKAKNTDIVTYQISTGVEALLGYLYLNKESSRLNEII 120
>gi|170017895|ref|YP_001728814.1| ribonuclease III [Leuconostoc citreum KM20]
gi|414596248|ref|ZP_11445824.1| Ribonuclease III [Leuconostoc citreum LBAE E16]
gi|421876095|ref|ZP_16307655.1| Ribonuclease III [Leuconostoc citreum LBAE C10]
gi|169804752|gb|ACA83370.1| Ribonuclease III [Leuconostoc citreum KM20]
gi|372558130|emb|CCF23775.1| Ribonuclease III [Leuconostoc citreum LBAE C10]
gi|390483181|emb|CCF27885.1| Ribonuclease III [Leuconostoc citreum LBAE E16]
Length = 135
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYN---NRVMAVVRCETQDALLQKLLNDSYL 174
N SLAYIGD IYEL R+H L L I + N + V + AL + D+ L
Sbjct: 10 NGLSLAYIGDAIYELEVRQHLL--SLGITKVNALQKQSKFYVSAKAHAALFNHMTTDNIL 67
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+ +E + G+N A + TK + Y ++ +E L GYLYL+ + R+ +M
Sbjct: 68 TEQELVYFKRGRN---AKSHTKAKNTDVVTYRISTGVEALFGYLYLSEQHERISQLM 121
>gi|223043008|ref|ZP_03613056.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14]
gi|314932754|ref|ZP_07840123.1| cysteine--tRNA ligase [Staphylococcus caprae C87]
gi|417907388|ref|ZP_12551161.1| RNase3 domain protein [Staphylococcus capitis VCU116]
gi|222443862|gb|EEE49959.1| cysteinyl-tRNA synthetase [Staphylococcus capitis SK14]
gi|313654435|gb|EFS18188.1| cysteine--tRNA ligase [Staphylococcus caprae C87]
gi|341596281|gb|EGS38897.1| RNase3 domain protein [Staphylococcus capitis VCU116]
Length = 128
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L+++
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPNRLHQVSKQYVSAKSQAQTLEYLISN 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
+ + EE +V+R G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELNVLRRGRN---AKSYTKAKNTDVQTYRKSSALEAVIGFLYLDHQHARLEELL 118
Query: 230 SKL 232
+
Sbjct: 119 QTI 121
>gi|423405185|ref|ZP_17382358.1| hypothetical protein ICW_05583 [Bacillus cereus BAG2X1-2]
gi|423480028|ref|ZP_17456742.1| hypothetical protein IEO_05485 [Bacillus cereus BAG6X1-1]
gi|401645555|gb|EJS63210.1| hypothetical protein ICW_05583 [Bacillus cereus BAG2X1-2]
gi|402424012|gb|EJV56208.1| hypothetical protein IEO_05485 [Bacillus cereus BAG6X1-1]
Length = 135
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|423456288|ref|ZP_17433141.1| hypothetical protein IEE_05032 [Bacillus cereus BAG5X1-1]
gi|423473116|ref|ZP_17449858.1| hypothetical protein IEM_04420 [Bacillus cereus BAG6O-2]
gi|401130887|gb|EJQ38542.1| hypothetical protein IEE_05032 [Bacillus cereus BAG5X1-1]
gi|402426614|gb|EJV58735.1| hypothetical protein IEM_04420 [Bacillus cereus BAG6O-2]
Length = 135
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTGFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|440785440|ref|ZP_20962197.1| hypothetical protein F502_18783 [Clostridium pasteurianum DSM 525]
gi|440218336|gb|ELP57558.1| hypothetical protein F502_18783 [Clostridium pasteurianum DSM 525]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYLSAEER 179
LA++GD IYEL+ R + + + + V AV V+ Q ++KLL+ L+ EE
Sbjct: 23 LAFVGDAIYELFIRAYIVNENRTTHVHKLHVKAVSFVKAHAQSEFIKKLLDS--LNEEEL 80
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
+ + G+N S + A Y A+ E + GYLYLT N R+ ++ K+
Sbjct: 81 SIYKRGRNSKSGTV--PKNADLCEYRSATGFEAIFGYLYLTEQNDRINYLLDKI 132
>gi|55670188|pdb|1U61|A Chain A, Crystal Structure Of Putative Ribonuclease Iii From
Bacillus Cereus
Length = 138
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 10 LNSLALAYXGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 70 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 124
>gi|304385484|ref|ZP_07367829.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
gi|418069760|ref|ZP_12707037.1| ribonuclease III family protein [Pediococcus acidilactici MA18/5M]
gi|304328691|gb|EFL95912.1| ribonuclease III [Pediococcus acidilactici DSM 20284]
gi|357536291|gb|EHJ20322.1| ribonuclease III family protein [Pediococcus acidilactici MA18/5M]
Length = 137
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLNDS 172
N +LAY+GD YE+Y RRH + ++ NR+ V V + Q AL+ + D
Sbjct: 10 INGIALAYLGDAEYEVYIRRHLIEEGMT---KPNRLHHVATRYVSAKAQAALIDAMQEDD 66
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLED 227
+L+ E + + G+N S + + Y ++ E + GYL LTN RL++
Sbjct: 67 FLTEAEWEAFKKGRNAKSHT--SAKNTSVLTYRISTGFEAIVGYLSLTNQTERLDE 120
>gi|229170942|ref|ZP_04298543.1| hypothetical protein bcere0006_780 [Bacillus cereus MM3]
gi|423462635|ref|ZP_17439429.1| hypothetical protein IEI_05772 [Bacillus cereus BAG5X2-1]
gi|228612482|gb|EEK69703.1| hypothetical protein bcere0006_780 [Bacillus cereus MM3]
gi|401130814|gb|EJQ38470.1| hypothetical protein IEI_05772 [Bacillus cereus BAG5X2-1]
Length = 135
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|402570817|ref|YP_006620160.1| hypothetical protein Desmer_0225 [Desulfosporosinus meridiei DSM
13257]
gi|402252014|gb|AFQ42289.1| hypothetical protein Desmer_0225 [Desulfosporosinus meridiei DSM
13257]
Length = 130
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YEL+ R H L ++E + + + VR TQ +L L + L
Sbjct: 7 MNALTLAYLGDAVYELWVRTHLLELGHERVKELHKQAVNYVRAGTQAQVLHALFPE--LD 64
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
E+ VV G+N + + Y A+ E+L GY L+ +R++ +K+
Sbjct: 65 EVEQQVVIRGRNTKGGHPKN---VDVVTYRHATGFESLVGYWQLSGQTDRMKWAFAKV 119
>gi|363890597|ref|ZP_09317923.1| hypothetical protein HMPREF9628_02145 [Eubacteriaceae bacterium
CM5]
gi|363893841|ref|ZP_09320935.1| hypothetical protein HMPREF9629_01261 [Eubacteriaceae bacterium
ACC19a]
gi|361963343|gb|EHL16421.1| hypothetical protein HMPREF9629_01261 [Eubacteriaceae bacterium
ACC19a]
gi|361964886|gb|EHL17891.1| hypothetical protein HMPREF9628_02145 [Eubacteriaceae bacterium
CM5]
Length = 135
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPL--SIEEYNNRVMAVVRCETQDALLQKLLNDS 172
+ N +LAYIGDCI+E+Y R + L + + + V+ +TQ +++ L ++
Sbjct: 16 NCINTLALAYIGDCIWEIYVRNYVLAKNKFSKVNKLHLLSTKYVKAKTQADMVKTLKENN 75
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDV 228
+ D+V G+N + T + A YN A+ E L GYLY+ N ++L+++
Sbjct: 76 IIDENMWDIVLRGRN---SATNPPKNANVQEYNYATGFEALIGYLYIKKNYSKLDEI 129
>gi|365903453|ref|ZP_09441276.1| ribonuclease III family protein [Lactobacillus malefermentans KCTC
3548]
Length = 137
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAY+GD IYE+Y R+ L P +++ +R V + Q AL+ + D
Sbjct: 11 LNGVTLAYMGDAIYEVYIRQQLLELGIMKPTNLQ---HRATHYVSAKAQAALISLMEQDD 67
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230
LS E + G+N S + Y ++ E L GYL+L+N + D +S
Sbjct: 68 ILSETEWLFFKRGRNAKSYT--HAKNTDVVTYRISTGFEALFGYLFLSNQTKRVDELS 123
>gi|257414066|ref|ZP_04745133.2| RNase3 domain protein [Roseburia intestinalis L1-82]
gi|257201343|gb|EEU99627.1| RNase3 domain protein [Roseburia intestinalis L1-82]
Length = 146
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD I++L R + E + R +V+ TQ +++KLL L+ EE
Sbjct: 29 TLAYIGDGIFDLVIRSVVVGKGNTRAGELHKRTSQIVKAHTQAEMIEKLL--PMLTEEEA 86
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+V R G+N S + A + Y +A+ E L GYLYL +
Sbjct: 87 EVYRRGRNAKSPTM--AKNATMSDYRKATGFEALMGYLYLKD 126
>gi|167749984|ref|ZP_02422111.1| hypothetical protein EUBSIR_00952 [Eubacterium siraeum DSM 15702]
gi|167657005|gb|EDS01135.1| RNase3 domain protein [Eubacterium siraeum DSM 15702]
Length = 133
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 98 MGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVV 156
M YE P K +LA+ GD +YE+Y R + + +++ + + + V
Sbjct: 1 MMYEIMTPAEAKA------LGGLTLAFFGDSVYEVYVREQIVKLGTMPVDKLHKKAVQYV 54
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
Q + ++ L+ EE ++ + G+N N R + Y RA+ +E L GY
Sbjct: 55 NAGFQSYAYDVIADE--LTEEETEIFKRGRNATGNNV--PRSSNPKDYRRATGMEALFGY 110
Query: 217 LYLTNAN-RLEDVMSKL 232
LYLT N R++++ K+
Sbjct: 111 LYLTGQNDRIKELFEKI 127
>gi|333980491|ref|YP_004518436.1| ribonuclease III [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823972|gb|AEG16635.1| ribonuclease III [Desulfotomaculum kuznetsovii DSM 6115]
Length = 143
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R++ + + S+ + + + VR +TQ ++ L L+ E
Sbjct: 27 LAYIGDAVYELAIRQYLVARGVTSVNQLHQETIKYVRADTQARVMHAL--KEQLTEGEAA 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
V R G+N S + R + Y ++ LE+L GYLYL+ + RL ++++
Sbjct: 85 VARRGRNARSGH--PPRGSDVISYRYSTGLESLIGYLYLSGQSERLGEILA 133
>gi|333373149|ref|ZP_08465065.1| ribonuclease III [Desmospora sp. 8437]
gi|332970728|gb|EGK09708.1| ribonuclease III [Desmospora sp. 8437]
Length = 143
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQ--KLLNDSYLSAEE 178
LAY+GD +YEL+ R H L E N++ VR + A + ++L D +L+ EE
Sbjct: 23 LAYMGDAVYELFIRHHLLARG---ETRPNKIHGQAVRFVSAAAQAEAVRILKD-WLTEEE 78
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
++VV+ G+N + + + A Y ++ LETL G+ YLT N +RL M ++
Sbjct: 79 KEVVKRGRNAKAKS--VPKNANTLDYRYSTGLETLIGHWYLTGNTDRLTQGMKQV 131
>gi|375087942|ref|ZP_09734286.1| hypothetical protein HMPREF9703_00368 [Dolosigranulum pigrum ATCC
51524]
gi|374563444|gb|EHR34760.1| hypothetical protein HMPREF9703_00368 [Dolosigranulum pigrum ATCC
51524]
Length = 137
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 124 YIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
Y+GD IYE+Y R H L + E + + V E Q ++ LL + LSA+E
Sbjct: 18 YMGDGIYEVYVREHLLVAGDTKPNELHRKAKRYVSAENQADVMDWLLAEERLSADEEIYF 77
Query: 183 RWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
+ G+N + ++TK + A Y+ ++ E + G+LYLTN +RL++++ +
Sbjct: 78 KRGRN---SKSKTKAKNASHRAYSYSTGFEAMIGWLYLTNQLDRLQELVRQ 125
>gi|404372663|ref|ZP_10977958.1| hypothetical protein CSBG_00029 [Clostridium sp. 7_2_43FAA]
gi|226911202|gb|EEH96403.1| hypothetical protein CSBG_00029 [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N LA IGD +YE+Y R L LS + + + + V+ ++Q A++ + + L
Sbjct: 18 LNPLQLALIGDGVYEIYIRNFILSNNTELSAHKMHVKAIGYVKAKSQSAIMHNI--EDTL 75
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+ +E + + G+N SA + A Y A+ E L GYLYL N RL +++ K
Sbjct: 76 TEDELYIYKRGRNTKSAT--VPKNADVIDYRNATGFEALLGYLYLIGNKERLYNILEK 131
>gi|422824396|ref|ZP_16872583.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|422877302|ref|ZP_16923772.1| ribonuclease III [Streptococcus sanguinis SK1056]
gi|324992445|gb|EGC24366.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|332359941|gb|EGJ37755.1| ribonuclease III [Streptococcus sanguinis SK1056]
Length = 130
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLEEEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E D+ + G+N AN+ TK + Y ++ E + GYL++T + RLE+++
Sbjct: 65 LTEKEEDIYKRGRN---ANSHTKAKNTDIVTYRMSTGFEAVMGYLHMTESIERLEELI 119
>gi|315923785|ref|ZP_07920015.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622905|gb|EFV02856.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
Length = 151
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAYIGD +Y Y RR+ + L + R+ A VR Q A +++LL L+
Sbjct: 27 LNPLTLAYIGDAVYSDYIRRYLIARGLQNVNHLTRLAARYVRASAQAAAIRQLL--PMLT 84
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
E+D+VR G+N S + A Y A+ LE L GYL LT + R ++M +
Sbjct: 85 EPEQDLVRRGRNTKSI---PPKHADKMDYRYATGLEALFGYLNLTGDTARERELMGR 138
>gi|253579511|ref|ZP_04856780.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849012|gb|EES76973.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 159
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLN 170
K ++ +LAYIGD +YEL R + + + + + ++V+ TQ ++++ +
Sbjct: 35 KDLRTYSPLTLAYIGDGVYELVIRTILVKKGNCPVNQLHRKASSLVKAGTQSSMMEVI-- 92
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+ L+ EE V R G+N S + A A Y RA+ E L GYLYL +
Sbjct: 93 EPMLTEEEHSVYRRGRNAHSPTM--AKHATMADYRRATGFEALMGYLYLKD 141
>gi|199598531|ref|ZP_03211948.1| Ribonuclease III family protein [Lactobacillus rhamnosus HN001]
gi|199590573|gb|EDY98662.1| Ribonuclease III family protein [Lactobacillus rhamnosus HN001]
Length = 142
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R H L L R V + Q AL+ + LS
Sbjct: 8 LNGIALAYLGDAVYEVYIREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGMQTADLLS 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
AEE +V + G+N S + Y ++ E L GYL+L
Sbjct: 68 AEETEVFKHGRNAKSYT--HAKHTDVVTYRISTGFEALFGYLHL 109
>gi|291535115|emb|CBL08227.1| Uncharacterized protein conserved in bacteria [Roseburia
intestinalis M50/1]
gi|291539641|emb|CBL12752.1| Uncharacterized protein conserved in bacteria [Roseburia
intestinalis XB6B4]
Length = 144
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD I++L R + E + R +V+ TQ +++KLL L+ EE
Sbjct: 27 TLAYIGDGIFDLVIRSVVVGKGNTRAGELHKRTSQIVKAHTQAEMIEKLL--PMLTEEEA 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+V R G+N S + A + Y +A+ E L GYLYL +
Sbjct: 85 EVYRRGRNAKSPTM--AKNATMSDYRKATGFEALMGYLYLKD 124
>gi|414153548|ref|ZP_11409871.1| putative ribonuclease mrnC [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411454946|emb|CCO07775.1| putative ribonuclease mrnC [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 143
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +YEL RR + + + + + VR Q L L + LS +E
Sbjct: 28 LAYLGDAVYELAVRRFLIAQGATKVNRLHREAVKYVRAGAQARALFAL--EDKLSEQELA 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
VVR G+N S + A A Y A++LE L GYLYL N R+++++
Sbjct: 86 VVRRGRNAKSG--LPPKGADVAEYRHATALEALIGYLYLQGNEGRIDEIIG 134
>gi|456013246|gb|EMF46905.1| Ribonuclease III family protein [Planococcus halocryophilus Or1]
Length = 139
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE R H L S +R V + Q +L++L + +L+
Sbjct: 12 LNALALAYMGDAVYEQAVREHLLRSGRSKPNILHRQSTTFVSAKAQAVVLKRLTEEEFLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
E V+R G+N S + + YN +++ E + G+LYL R+++++S
Sbjct: 72 EAELAVMRRGRNAKSGS--VPKNTDVQTYNFSTAFEAVLGWLYLKEEQARVDEIIS 125
>gi|402835792|ref|ZP_10884349.1| ribonuclease III domain protein [Mogibacterium sp. CM50]
gi|402273155|gb|EJU22363.1| ribonuclease III domain protein [Mogibacterium sp. CM50]
Length = 129
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YEL R + + + + R +A V + Q L+ ++ D +L+
Sbjct: 8 MNTTTLAYMGDAVYELQIRELLIGRNKGDVGKVHKRAIAYVSSDGQSKALKTMMKD-FLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EER +V+ +N T R A Y A+ E L G LYL + +RLE V+ +
Sbjct: 67 EEERKLVKRARN--KRATSRPRNADPRRYKLATGFEALIGALYLVGDKDRLEKVIHE 121
>gi|395243193|ref|ZP_10420180.1| Ribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394484423|emb|CCI81188.1| Ribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 147
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 108 PKVGKPRS----VFNAASLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCE 159
PKV K +A +LAY+GD +YE+Y RRH + P ++ Y V +
Sbjct: 4 PKVLKEEKRNPYTMSALTLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAK 60
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q L+ K+ + LS +E DV G+N S +T K + Y ++ E L GYL L
Sbjct: 61 AQAWLITKMEQEDMLSEDELDVFHRGRNAKS-HTHAKNTS-LTTYRLSTGFEALIGYLDL 118
Query: 220 TNANRLEDVMSK 231
+ D + +
Sbjct: 119 LGEHERVDQICQ 130
>gi|302876554|ref|YP_003845187.1| ribonuclease III [Clostridium cellulovorans 743B]
gi|307687226|ref|ZP_07629672.1| ribonuclease III [Clostridium cellulovorans 743B]
gi|302579411|gb|ADL53423.1| ribonuclease III [Clostridium cellulovorans 743B]
Length = 137
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLS--IEEYNNRVMAVVRCETQDALLQKLLNDS 172
S N+ LAYIGD +YE++ R H + + + + + V+ E Q + + ++
Sbjct: 16 SQLNSLVLAYIGDAVYEVFVRSHLINENRNTLVNKLHKEATNYVKAEAQSNFIHGIFSE- 74
Query: 173 YLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ EE V + G+N S TK + A Y A+ E L GYLYL+ RL ++
Sbjct: 75 -LTEEEVAVYKRGRNTKSY---TKPKNAEVKHYRNATGFEALVGYLYLSEQMERLNYLLK 130
Query: 231 KL 232
KL
Sbjct: 131 KL 132
>gi|255527267|ref|ZP_05394148.1| ribonuclease III [Clostridium carboxidivorans P7]
gi|296187246|ref|ZP_06855642.1| RNase3 domain protein [Clostridium carboxidivorans P7]
gi|255509052|gb|EET85411.1| ribonuclease III [Clostridium carboxidivorans P7]
gi|296048117|gb|EFG87555.1| RNase3 domain protein [Clostridium carboxidivorans P7]
Length = 141
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYLS 175
N LA++GD +YE++ R + + + +N V A+ V+ Q ++K+ + LS
Sbjct: 19 NPLVLAFVGDAVYEVFVRTYLVDKNRDMSVHNLHVKAIKFVKAHAQSEFIKKI--EKELS 76
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA----NRLEDVMSK 231
EE + G+N S + + A Y A+ ETL GYLYLT N L + + +
Sbjct: 77 EEEMYFFKRGRN--SKSGTVPKNADVQEYRFATGFETLIGYLYLTEQEERLNLLLNTIIE 134
Query: 232 LGFTNG 237
L T G
Sbjct: 135 LQITGG 140
>gi|297582427|ref|YP_003698207.1| ribonuclease III [Bacillus selenitireducens MLS10]
gi|297140884|gb|ADH97641.1| ribonuclease III [Bacillus selenitireducens MLS10]
Length = 141
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD ++++Y R + + + + R A V + Q +L + L
Sbjct: 13 LNALALAYMGDGVFDVYIRYRLISQGQVRPNQLHRRATAYVSAKAQALILYSMQEQGVLR 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
EE VVR G+N S + Y +++ E L GYLYLT + R+++++
Sbjct: 73 EEEEAVVRRGRNAKSGT--IPKHTDQQTYRMSTAFEALIGYLYLTKQHERMDELIQ 126
>gi|403071328|ref|ZP_10912660.1| hypothetical protein ONdio_17265 [Oceanobacillus sp. Ndiop]
Length = 134
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLN-DSYLSAEE 178
+LAY+GD IYE+Y R H + + + + + V ++Q A++ +N + +LS EE
Sbjct: 13 ALAYMGDAIYEVYVREHLIKKGKVKPNQLHREAVTFVSGKSQAAVILHWINQEDFLSEEE 72
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
V G+N S T + Y +++ E L GY +L N RL+++++
Sbjct: 73 TSVAARGRNAKSGT--TPKNISVQTYRYSTAFEALIGYHHLMGNQERLDELIT 123
>gi|20808680|ref|NP_623851.1| hypothetical protein TTE2314 [Thermoanaerobacter tengcongensis MB4]
gi|20517316|gb|AAM25455.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 136
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD +Y LY R + + + N + + V+ +Q L+++ + L+ EE++
Sbjct: 22 LAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKASSQARSLERIYD--LLTEEEKE 79
Query: 181 VVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYL 219
+VR G+N A+T K GA+V Y A++ E L GYLYL
Sbjct: 80 IVRRGRN-AKASTVPK---GASVKEYKYATAFEALVGYLYL 116
>gi|167770668|ref|ZP_02442721.1| hypothetical protein ANACOL_02014 [Anaerotruncus colihominis DSM
17241]
gi|167667263|gb|EDS11393.1| RNase3 domain protein [Anaerotruncus colihominis DSM 17241]
Length = 130
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD +YEL AR+ + E ++R +A+V Q A + + L+ EE
Sbjct: 19 LAFLGDAVYELCARQAVAAMGTAHVGEMHDRAVALVNASAQSAAFAVM--EPVLTEEELA 76
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V + G+N AN + A Y RA+ +E L GYLYL
Sbjct: 77 VYKRGRN---ANASVPKNASVVDYRRATGVEALFGYLYL 112
>gi|406666949|ref|ZP_11074712.1| Mini-ribonuclease 3 [Bacillus isronensis B3W22]
gi|405385232|gb|EKB44668.1| Mini-ribonuclease 3 [Bacillus isronensis B3W22]
Length = 137
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
NA +LAY+GD + E R H + P ++ + V ++Q ++ +++ ++
Sbjct: 12 LNALALAYMGDAVLEQRIREHLILSGRAKPNTL---HKEATKYVSAKSQSNIVHRMIEEN 68
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
YL+ EE+ V R G+N S + + Y +S E + G+L+L+N +
Sbjct: 69 YLTEEEQAVFRRGRNAKSGS--VPKNTDVRTYRNSSGFEAVLGFLFLSNEHH 118
>gi|238916435|ref|YP_002929952.1| ribonuclease III [Eubacterium eligens ATCC 27750]
gi|238871795|gb|ACR71505.1| ribonuclease III [Eubacterium eligens ATCC 27750]
Length = 147
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD IY+L + + + + + N + ++V+ E+Q A++ + + LS E
Sbjct: 32 LAYIGDSIYDLVIKTWVIEQGNMQVNKLNKKTSSIVKAESQSAMIGVI--EPMLSEHEEA 89
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
V + G+N S + + A Y RA+ E L GYLYL+
Sbjct: 90 VYKRGRNAKSYTS--AKNASIGDYRRATGFEALMGYLYLSG 128
>gi|229552881|ref|ZP_04441606.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|258540509|ref|YP_003175008.1| ribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385836147|ref|YP_005873922.1| RNase3 domain-containing protein [Lactobacillus rhamnosus ATCC
8530]
gi|229313750|gb|EEN79723.1| ribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|257152185|emb|CAR91157.1| Ribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355395639|gb|AER65069.1| RNase3 domain protein [Lactobacillus rhamnosus ATCC 8530]
Length = 142
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R H L L R V + Q AL+ + LS
Sbjct: 8 LNGIALAYLGDAVYEVYIREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGMQTADLLS 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
AEE +V + G+N S + Y ++ E L GYL+L
Sbjct: 68 AEETEVFKHGRNAKSYT--HAKHTDVVTYRISTGFEALFGYLHL 109
>gi|258509320|ref|YP_003172071.1| ribonuclease III [Lactobacillus rhamnosus GG]
gi|385828956|ref|YP_005866728.1| ribonuclease III [Lactobacillus rhamnosus GG]
gi|418072173|ref|ZP_12709445.1| ribonuclease III [Lactobacillus rhamnosus R0011]
gi|423080360|ref|ZP_17068984.1| RNase3 domain protein [Lactobacillus rhamnosus ATCC 21052]
gi|257149247|emb|CAR88220.1| Ribonuclease III [Lactobacillus rhamnosus GG]
gi|259650601|dbj|BAI42763.1| ribonuclease III [Lactobacillus rhamnosus GG]
gi|357537424|gb|EHJ21448.1| ribonuclease III [Lactobacillus rhamnosus R0011]
gi|357542702|gb|EHJ24739.1| RNase3 domain protein [Lactobacillus rhamnosus ATCC 21052]
Length = 142
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R H L L R V + Q AL+ + LS
Sbjct: 8 LNGIALAYLGDAVYEVYIREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGMQTADLLS 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
AEE +V + G+N S + Y ++ E L GYL+L
Sbjct: 68 AEETEVFKHGRNAKSYT--HAKHTDVVTYRISTGFEALFGYLHL 109
>gi|417886664|ref|ZP_12530808.1| RNase3 domain protein [Lactobacillus oris F0423]
gi|341593055|gb|EGS35912.1| RNase3 domain protein [Lactobacillus oris F0423]
Length = 137
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L LS + + V + Q AL+ + D L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLSTGLSKPTKLQHIATHYVSAKAQAALIDLMKADELLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
AEE + G+N AN+ T + Y ++ +E L GYL L+
Sbjct: 69 AEEWAYFKRGRN---ANSHTHAKHTSVLTYRISTGVEALMGYLQLSG 112
>gi|323490594|ref|ZP_08095799.1| hypothetical protein GPDM_14587 [Planococcus donghaensis MPA1U2]
gi|323395686|gb|EGA88527.1| hypothetical protein GPDM_14587 [Planococcus donghaensis MPA1U2]
Length = 139
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE R H L S +R V + Q +L++L + +L+
Sbjct: 12 LNALALAYMGDAVYEQAVREHLLRSGRSKPNILHRQSTTFVSAKAQAVVLKRLTEEDFLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
E V+R G+N S + + YN +++ E + G+LYL R+++++S
Sbjct: 72 EAELAVMRRGRNAKSGS--VPKNTDVQTYNFSTAFEAVLGWLYLKEEQARVDEIIS 125
>gi|87124231|ref|ZP_01080080.1| hypothetical protein RS9917_11495 [Synechococcus sp. RS9917]
gi|86167803|gb|EAQ69061.1| hypothetical protein RS9917_11495 [Synechococcus sp. RS9917]
Length = 136
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 103 WLPNPPKVGKPRSVFNAASLAYIGDCIYELYAR-RHFLFPPLSIEEYNNRVMAVVRCETQ 161
W+ G LA++GD ++EL+ R RH P S + + V V
Sbjct: 4 WIRAQATQGGIADGLGPLQLAWLGDAVWELHQRLRHCRRPGRSDDLHRAVVAEVKAAAQA 63
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
D LL++L D L+ +ERD W + + R RR A++Y RA+ ET+ G+L+L N
Sbjct: 64 D-LLERL--DPLLTDQERD---WVRRGRNRAGRGPRRGEASIYGRATGFETMVGWLFLQN 117
Query: 222 ANRLEDVMSKLGFTN 236
RL +++ +L T+
Sbjct: 118 PARLAELLDRLEETD 132
>gi|410454409|ref|ZP_11308348.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409932224|gb|EKN69191.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 141
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E Y RRH L+ + + + V + Q +L +L+++ L+
Sbjct: 13 LNSLALAYMGDAVFESYVRRHLLYNGKVRPHQLHRLATTYVSAKAQCQVLFQLMDEQLLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
EE VV G+N S + Y +++ E L GYL+
Sbjct: 73 EEELAVVMRGRNAKSGT--VPKNTDVQTYRYSTAFEALMGYLF 113
>gi|260437952|ref|ZP_05791768.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
gi|292809703|gb|EFF68908.1| cysteine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
Length = 139
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSY 173
++++ +LAYIGDC+YEL R + + + + + N + + + TQ +++ +++
Sbjct: 17 ALYSPLTLAYIGDCVYELIIRTNLVTRGNAPVNKLNKKASNLAKASTQARIIESIMD--M 74
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
LS +E + G+N S T+ K A + Y +A+ E L GYLYL +R+ +++ K
Sbjct: 75 LSEDEEAAYKRGRNAHSC-TKAK-NASTSDYRKATGFEALIGYLYLQKKFDRIMELVKK- 131
Query: 233 GF 234
GF
Sbjct: 132 GF 133
>gi|355679552|ref|ZP_09061385.1| hypothetical protein HMPREF9469_04422 [Clostridium citroniae
WAL-17108]
gi|354812129|gb|EHE96749.1| hypothetical protein HMPREF9469_04422 [Clostridium citroniae
WAL-17108]
Length = 180
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R + + + + + R +V+ TQ AL++ + + L+ EE
Sbjct: 33 LAYIGDAVYELIIRARVINQGSMQVNKMHKRSAQLVKAPTQAALIRAV--EELLTEEEHG 90
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V + G+N SA T + A Y A+ +E L G+L++
Sbjct: 91 VYKRGRNAKSAT--TAKNASVIDYRTATGMEALVGWLFI 127
>gi|422420836|ref|ZP_16497789.1| cysteinyl-tRNA synthetase, partial [Listeria seeligeri FSL S4-171]
gi|313639767|gb|EFS04516.1| cysteinyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
Length = 117
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L++L+ D++L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKQLIADNFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
EE + + G+N S + A Y+ ++S E + GYLYL
Sbjct: 70 EEEAGIAKRGRNAKSYT--VPKNTDPATYSMSTSFEAVLGYLYLAG 113
>gi|339443048|ref|YP_004709053.1| hypothetical protein CXIVA_19840 [Clostridium sp. SY8519]
gi|338902449|dbj|BAK47951.1| uncharacterized BCR [Clostridium sp. SY8519]
Length = 144
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 121 SLAYIGDCIYELYAR-----RHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
+LAYIGD +Y+L R R P L + + +VV+ + Q A++ +L + ++
Sbjct: 27 TLAYIGDGVYDLVIRSIVVGRGNTKPHL----LHEKTSSVVKAKAQSAMIDFMLPE--MT 80
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
EE + R G+N S + A Y RA+ E L GYLYLT+ +R+ D+++
Sbjct: 81 EEEEHIYRRGRNAKSVTM--AKNATMTEYRRATGFEALIGYLYLTDQTDRMLDLIA 134
>gi|254431908|ref|ZP_05045611.1| ribonuclease III family protein [Cyanobium sp. PCC 7001]
gi|197626361|gb|EDY38920.1| ribonuclease III family protein [Cyanobium sp. PCC 7001]
Length = 114
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++EL+ R + + + +V+A VR + Q L++L D +L + ER+
Sbjct: 3 QLAWLGDAVWELHQRLNRCREAARALDLHRQVVASVRADAQARQLERL--DPWLQSSERE 60
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
+V + + R R A Y RA+ E L G+L+L + RL +++ L N
Sbjct: 61 LV---RRARNRAGRGPRGGDPAAYARATGFEALLGWLFLHDPERLVELLDHLEDNN 113
>gi|381183088|ref|ZP_09891852.1| hypothetical protein KKC_07332 [Listeriaceae bacterium TTU M1-001]
gi|380317011|gb|EIA20366.1| hypothetical protein KKC_07332 [Listeriaceae bacterium TTU M1-001]
Length = 127
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + V + Q +L LL +L+
Sbjct: 10 LNGLALAYMGDAVYEQHIRLYLLQLGKTKPNQLQKKATEFVSAKGQAKVLNTLLERDFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE V + G+N S + + AA YN +S+ E + GYLYL
Sbjct: 70 EEEMAVYKRGRNAKSYSL--PKNTDAATYNLSSAFEAVIGYLYL 111
>gi|23097555|ref|NP_691021.1| hypothetical protein OB0100 [Oceanobacillus iheyensis HTE831]
gi|22775778|dbj|BAC12056.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 138
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 112 KPRSV--FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKL 168
KP V + +LAYIGD I+ELY R + L ++ + + + V +TQ ++
Sbjct: 2 KPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILYW 61
Query: 169 LN-DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
L+ D +L+ EE+ VV G+N S + + Y +++ E L GY Y+ N +RLE
Sbjct: 62 LDVDGFLTEEEQKVVARGRNAKSGS--VPKNISVQTYRYSTAFEALIGYHYMMKNEDRLE 119
Query: 227 DVMS 230
+++
Sbjct: 120 ELIQ 123
>gi|342733077|ref|YP_004771916.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384456445|ref|YP_005669043.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417958886|ref|ZP_12601784.1| hypothetical protein SFB1_013G3 [Candidatus Arthromitus sp. SFB-1]
gi|417962827|ref|ZP_12604955.1| hypothetical protein SFB3_083G1 [Candidatus Arthromitus sp. SFB-3]
gi|417965447|ref|ZP_12606972.1| hypothetical protein SFB4_242G6 [Candidatus Arthromitus sp. SFB-4]
gi|417966716|ref|ZP_12608015.1| hypothetical protein SFB5_111G2 [Candidatus Arthromitus sp. SFB-5]
gi|417968889|ref|ZP_12609861.1| hypothetical protein SFB6_099G1 [Candidatus Arthromitus sp. SFB-co]
gi|418015516|ref|ZP_12655081.1| ribonuclease III family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373336|ref|ZP_12965425.1| Putative ribonuclease [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330532|dbj|BAK57174.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505851|gb|EGX28145.1| ribonuclease III family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984791|dbj|BAK80467.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380334725|gb|EIA25076.1| hypothetical protein SFB1_013G3 [Candidatus Arthromitus sp. SFB-1]
gi|380335468|gb|EIA25648.1| hypothetical protein SFB3_083G1 [Candidatus Arthromitus sp. SFB-3]
gi|380337616|gb|EIA26645.1| hypothetical protein SFB4_242G6 [Candidatus Arthromitus sp. SFB-4]
gi|380338790|gb|EIA27645.1| hypothetical protein SFB6_099G1 [Candidatus Arthromitus sp. SFB-co]
gi|380340062|gb|EIA28697.1| hypothetical protein SFB5_111G2 [Candidatus Arthromitus sp. SFB-5]
gi|380341172|gb|EIA29665.1| Putative ribonuclease [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 137
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 117 FNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
FN S+AYIGDC+YE+Y R + + F + + + V+ V + Q + K + D +
Sbjct: 19 FNILSVAYIGDCVYEMYFRNYIIKRFGHIDSNKLHLEVIKYVNAKFQTNIYYK-IKDIF- 76
Query: 175 SAEERDVVRWGKNVGSANTRTK---RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E ++ + + N+R K + G Y A+ LE++ GYLY+ N RL+ + +
Sbjct: 77 --KENEIYYFKR---GRNSRIKTIPKNCGIGNYKIATGLESVIGYLYMIGNFKRLDFIFN 131
Query: 231 KL 232
++
Sbjct: 132 EI 133
>gi|259502663|ref|ZP_05745565.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041]
gi|259169308|gb|EEW53803.1| cysteine-tRNA ligase [Lactobacillus antri DSM 16041]
Length = 137
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L LS + + V + Q AL+ + D L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLSKGLSKPTKLQHIATHYVSAKAQAALIDLMKADQLLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
AEE + G+N AN+ T + Y ++ E L GYL L+
Sbjct: 69 AEEWAYFKRGRN---ANSHTHAKHTSVLTYRISTGFEALMGYLQLSG 112
>gi|347532518|ref|YP_004839281.1| putative ribonuclease III [Roseburia hominis A2-183]
gi|345502666|gb|AEN97349.1| putative ribonuclease III [Roseburia hominis A2-183]
Length = 144
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD IY+L R + E + R +V+ TQ +++ LL L+ EE
Sbjct: 27 TLAYIGDGIYDLVIRSVVVGKGNTRAGELHKRTSQIVKAHTQAEMMEVLL--PLLTEEEA 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
D+ R G+N S + A + Y +A+ ETL G+LYL +
Sbjct: 85 DIYRRGRNAKSPT--MAKNATMSDYRKATGFETLMGWLYLQD 124
>gi|284048090|ref|YP_003398429.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952311|gb|ADB47114.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 157
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLS-----IEEYNNR-VMAVVRCETQDALL 165
+PR + + LAYIGD ++ LY R L P+S + + +R V AV++ + DAL
Sbjct: 25 EPR-LIHPVELAYIGDAVFSLYVRMRIL--PVSSHVQVLHDLASRMVSAVMQAKAMDAL- 80
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANR 224
+ L+ EE + R G+N S ++ A Y + ++ E L GYLYL + +R
Sbjct: 81 -----EPELTEEEAQIARRGRNTKSTVPKS---ASVREYRQGTAFEALMGYLYLMDRKDR 132
Query: 225 LEDVM 229
L+ +M
Sbjct: 133 LQALM 137
>gi|15926208|ref|NP_373741.1| hypothetical protein SA0489 [Staphylococcus aureus subsp. aureus
N315]
gi|21282215|ref|NP_645303.1| hypothetical protein MW0486 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485395|ref|YP_042616.1| hypothetical protein SAS0488 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57634655|ref|YP_182412.1| hypothetical protein SAV0530.1 [Staphylococcus aureus subsp. aureus
Mu50]
gi|57651407|ref|YP_185463.1| hypothetical protein SACOL0577 [Staphylococcus aureus subsp. aureus
COL]
gi|87161610|ref|YP_493219.1| hypothetical protein SAUSA300_0516 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194293|ref|YP_499085.1| hypothetical protein SAOUHSC_00512 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148266990|ref|YP_001245933.1| hypothetical protein SaurJH9_0553 [Staphylococcus aureus subsp.
aureus JH9]
gi|150393037|ref|YP_001315712.1| hypothetical protein SaurJH1_0567 [Staphylococcus aureus subsp.
aureus JH1]
gi|151220705|ref|YP_001331527.1| hypothetical protein NWMN_0493 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156978859|ref|YP_001441118.1| hypothetical protein SAHV_0528 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161508770|ref|YP_001574429.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141033|ref|ZP_03565526.1| hypothetical protein SauraJ_05263 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315640|ref|ZP_04838853.1| hypothetical protein SauraC_05747 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731135|ref|ZP_04865300.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253732538|ref|ZP_04866703.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130]
gi|255005324|ref|ZP_05143925.2| hypothetical protein SauraM_02615 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795371|ref|ZP_05644350.1| ribonuclease III [Staphylococcus aureus A9781]
gi|258420420|ref|ZP_05683363.1| ribonuclease III [Staphylococcus aureus A9719]
gi|258439341|ref|ZP_05690273.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299]
gi|258444081|ref|ZP_05692418.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446349|ref|ZP_05694507.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300]
gi|258448442|ref|ZP_05696557.1| YazC [Staphylococcus aureus A6224]
gi|258452737|ref|ZP_05700735.1| ribonuclease III [Staphylococcus aureus A5948]
gi|258453798|ref|ZP_05701772.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262049573|ref|ZP_06022442.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30]
gi|262052419|ref|ZP_06024619.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3]
gi|269202153|ref|YP_003281422.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894965|ref|ZP_06303188.1| ribonuclease III family protein [Staphylococcus aureus A8117]
gi|282915853|ref|ZP_06323618.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus D139]
gi|282924444|ref|ZP_06332116.1| ribonuclease III family protein [Staphylococcus aureus A9765]
gi|282928867|ref|ZP_06336458.1| ribonuclease III family protein [Staphylococcus aureus A10102]
gi|283769686|ref|ZP_06342578.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus H19]
gi|284023540|ref|ZP_06377938.1| hypothetical protein Saura13_03082 [Staphylococcus aureus subsp.
aureus 132]
gi|294850306|ref|ZP_06791040.1| ribonuclease III family protein [Staphylococcus aureus A9754]
gi|295406907|ref|ZP_06816710.1| ribonuclease III family protein [Staphylococcus aureus A8819]
gi|296275776|ref|ZP_06858283.1| hypothetical protein SauraMR_05492 [Staphylococcus aureus subsp.
aureus MR1]
gi|297208756|ref|ZP_06925184.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297246269|ref|ZP_06930118.1| ribonuclease III family protein [Staphylococcus aureus A8796]
gi|300912846|ref|ZP_07130288.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
gi|304381871|ref|ZP_07364518.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379013812|ref|YP_005290048.1| hypothetical protein SAVC_02240 [Staphylococcus aureus subsp.
aureus VC40]
gi|384861193|ref|YP_005743913.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384863859|ref|YP_005749218.1| RNase3 domain-containing protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384869116|ref|YP_005751830.1| Ribonuclease III [Staphylococcus aureus subsp. aureus T0131]
gi|385780796|ref|YP_005756967.1| hypothetical protein MS7_0520 [Staphylococcus aureus subsp. aureus
11819-97]
gi|386830174|ref|YP_006236828.1| hypothetical protein SAEMRSA15_04570 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387142220|ref|YP_005730613.1| putative ribonuclease [Staphylococcus aureus subsp. aureus TW20]
gi|387149691|ref|YP_005741255.1| Small protein; cysteinyl-tRNA synthetase like-protein
[Staphylococcus aureus 04-02981]
gi|387779670|ref|YP_005754468.1| putative ribonuclease [Staphylococcus aureus subsp. aureus LGA251]
gi|415688904|ref|ZP_11452419.1| hypothetical protein CGSSa01_14595 [Staphylococcus aureus subsp.
aureus CGS01]
gi|415694005|ref|ZP_11455610.1| hypothetical protein CGSSa03_13062 [Staphylococcus aureus subsp.
aureus CGS03]
gi|416840765|ref|ZP_11903952.1| hypothetical protein SAO11_1359 [Staphylococcus aureus O11]
gi|416846019|ref|ZP_11906362.1| hypothetical protein SAO46_1004 [Staphylococcus aureus O46]
gi|417648361|ref|ZP_12298187.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|417650788|ref|ZP_12300553.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|417654146|ref|ZP_12303873.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|417796759|ref|ZP_12443963.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|417798454|ref|ZP_12445620.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|417801372|ref|ZP_12448465.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|417893579|ref|ZP_12537605.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|417895943|ref|ZP_12539919.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21235]
gi|417899741|ref|ZP_12543642.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|417902188|ref|ZP_12546057.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|417902908|ref|ZP_12546769.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|418279373|ref|ZP_12892736.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|418286196|ref|ZP_12898847.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|418312774|ref|ZP_12924282.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21334]
gi|418315109|ref|ZP_12926573.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|418318096|ref|ZP_12929510.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21232]
gi|418320283|ref|ZP_12931644.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|418423703|ref|ZP_12996850.1| hypothetical protein MQA_01627 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418426647|ref|ZP_12999673.1| hypothetical protein MQC_01791 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418429573|ref|ZP_13002504.1| hypothetical protein MQE_02004 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418432468|ref|ZP_13005268.1| hypothetical protein MQG_02013 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436182|ref|ZP_13007999.1| hypothetical protein MQI_01626 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439081|ref|ZP_13010802.1| hypothetical protein MQK_01842 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442061|ref|ZP_13013678.1| hypothetical protein MQM_02079 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445189|ref|ZP_13016680.1| hypothetical protein MQO_02119 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448129|ref|ZP_13019534.1| hypothetical protein MQQ_01972 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418450953|ref|ZP_13022295.1| hypothetical protein MQS_02295 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418453970|ref|ZP_13025243.1| hypothetical protein MQU_02278 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418456874|ref|ZP_13028089.1| hypothetical protein MQW_02342 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418566840|ref|ZP_13131208.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|418569658|ref|ZP_13133977.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|418573443|ref|ZP_13137637.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|418578421|ref|ZP_13142516.1| hypothetical protein SACIG1114_1053 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418639559|ref|ZP_13201804.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-3]
gi|418642061|ref|ZP_13204262.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|418643827|ref|ZP_13205982.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|418646216|ref|ZP_13208327.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|418651255|ref|ZP_13213263.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|418654856|ref|ZP_13216749.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|418656920|ref|ZP_13218704.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-105]
gi|418658757|ref|ZP_13220466.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|418662555|ref|ZP_13224099.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|418871530|ref|ZP_13425906.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|418874548|ref|ZP_13428814.1| hypothetical protein SACIGC93_0685 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418877380|ref|ZP_13431619.1| hypothetical protein SACIG1165_1013 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880237|ref|ZP_13434457.1| hypothetical protein SACIG1213_1064 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883164|ref|ZP_13437364.1| hypothetical protein SACIG1769_1187 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418885824|ref|ZP_13439974.1| hypothetical protein SACIG1150_1058 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418893990|ref|ZP_13448091.1| hypothetical protein SACIG1057_1078 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418902794|ref|ZP_13456835.1| hypothetical protein SACIG1770_1085 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418905101|ref|ZP_13459130.1| hypothetical protein SACIGC345D_0572 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418911199|ref|ZP_13465182.1| hypothetical protein SACIG547_1217 [Staphylococcus aureus subsp.
aureus CIG547]
gi|418913721|ref|ZP_13467694.1| hypothetical protein SACIGC340D_0981 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418919346|ref|ZP_13473292.1| hypothetical protein SACIGC348_1135 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418924758|ref|ZP_13478661.1| hypothetical protein SACIG2018_0893 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418927846|ref|ZP_13481732.1| hypothetical protein SACIG1612_1136 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418930560|ref|ZP_13484408.1| hypothetical protein SACIG1750_0973 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418933461|ref|ZP_13487285.1| hypothetical protein SACIGC128_0985 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418949151|ref|ZP_13501410.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-157]
gi|418954705|ref|ZP_13506661.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-189]
gi|418987431|ref|ZP_13535104.1| hypothetical protein SACIG1835_0678 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418990425|ref|ZP_13538086.1| hypothetical protein SACIG1096_1081 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|419774828|ref|ZP_14300782.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus CO-23]
gi|419785928|ref|ZP_14311672.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-M]
gi|421149295|ref|ZP_15608953.1| hypothetical protein Newbould305_1056 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422744667|ref|ZP_16798622.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745098|ref|ZP_16799044.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|424775950|ref|ZP_18202937.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|424784384|ref|ZP_18211194.1| Ribonuclease III family protein [Staphylococcus aureus CN79]
gi|440707552|ref|ZP_20888247.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21282]
gi|440734005|ref|ZP_20913618.1| hypothetical protein SASA_00140 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443637225|ref|ZP_21121310.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443638285|ref|ZP_21122332.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21196]
gi|448741473|ref|ZP_21723437.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|448743999|ref|ZP_21725904.1| ribonuclease III [Staphylococcus aureus KT/Y21]
gi|122540661|sp|Q2G2M4.1|MRNC_STAA8 RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|13183697|gb|AAK15304.1|AF327733_1 YazC [Staphylococcus aureus subsp. aureus str. Newman]
gi|13700421|dbj|BAB41719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|21203651|dbj|BAB94351.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|46395519|dbj|BAD16605.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
Mu50]
gi|49243838|emb|CAG42263.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285593|gb|AAW37687.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
COL]
gi|87127584|gb|ABD22098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201851|gb|ABD29661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740059|gb|ABQ48357.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
gi|149945489|gb|ABR51425.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|150373505|dbj|BAF66765.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156720994|dbj|BAF77411.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
gi|160367579|gb|ABX28550.1| hypothetical protein USA300HOU_0524 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725100|gb|EES93829.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253729467|gb|EES98196.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH130]
gi|257789343|gb|EEV27683.1| ribonuclease III [Staphylococcus aureus A9781]
gi|257843610|gb|EEV68016.1| ribonuclease III [Staphylococcus aureus A9719]
gi|257847678|gb|EEV71677.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A9299]
gi|257850751|gb|EEV74696.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257854943|gb|EEV77888.1| cysteinyl-tRNA synthetase [Staphylococcus aureus A6300]
gi|257858311|gb|EEV81198.1| YazC [Staphylococcus aureus A6224]
gi|257859610|gb|EEV82460.1| ribonuclease III [Staphylococcus aureus A5948]
gi|257864054|gb|EEV86808.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|259159665|gb|EEW44709.1| hypothetical protein SA930_0255 [Staphylococcus aureus 930918-3]
gi|259162313|gb|EEW46886.1| hypothetical protein SAD30_0367 [Staphylococcus aureus D30]
gi|262074443|gb|ACY10416.1| hypothetical protein SAAV_0492 [Staphylococcus aureus subsp. aureus
ED98]
gi|269940103|emb|CBI48479.1| putative ribonuclease [Staphylococcus aureus subsp. aureus TW20]
gi|282320149|gb|EFB50494.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus D139]
gi|282589475|gb|EFB94564.1| ribonuclease III family protein [Staphylococcus aureus A10102]
gi|282592855|gb|EFB97859.1| ribonuclease III family protein [Staphylococcus aureus A9765]
gi|282762647|gb|EFC02784.1| ribonuclease III family protein [Staphylococcus aureus A8117]
gi|283459833|gb|EFC06923.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus H19]
gi|285816230|gb|ADC36717.1| Small protein; cysteinyl-tRNA synthetase like-protein
[Staphylococcus aureus 04-02981]
gi|294822818|gb|EFG39253.1| ribonuclease III family protein [Staphylococcus aureus A9754]
gi|294968138|gb|EFG44164.1| ribonuclease III family protein [Staphylococcus aureus A8819]
gi|296886701|gb|EFH25606.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297176867|gb|EFH36125.1| ribonuclease III family protein [Staphylococcus aureus A8796]
gi|300885950|gb|EFK81153.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
gi|302750422|gb|ADL64599.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304339657|gb|EFM05604.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312829026|emb|CBX33868.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128823|gb|EFT84822.1| hypothetical protein CGSSa03_13062 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196658|gb|EFU27005.1| hypothetical protein CGSSa01_14595 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141605|gb|EFW33444.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|320141767|gb|EFW33595.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439801|gb|EGA97518.1| hypothetical protein SAO11_1359 [Staphylococcus aureus O11]
gi|323443097|gb|EGB00717.1| hypothetical protein SAO46_1004 [Staphylococcus aureus O46]
gi|329313251|gb|AEB87664.1| Ribonuclease III [Staphylococcus aureus subsp. aureus T0131]
gi|329727910|gb|EGG64359.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21172]
gi|329731024|gb|EGG67397.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21189]
gi|329731960|gb|EGG68316.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21193]
gi|334268145|gb|EGL86590.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21305]
gi|334275784|gb|EGL94059.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21310]
gi|334276898|gb|EGL95141.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21318]
gi|341841149|gb|EGS82612.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21235]
gi|341843783|gb|EGS85004.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21266]
gi|341844349|gb|EGS85566.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21259]
gi|341850527|gb|EGS91645.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21269]
gi|341854350|gb|EGS95221.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21201]
gi|344176772|emb|CCC87234.1| putative ribonuclease [Staphylococcus aureus subsp. aureus LGA251]
gi|364521785|gb|AEW64535.1| hypothetical protein MS7_0520 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365167750|gb|EHM59127.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21209]
gi|365170707|gb|EHM61668.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21178]
gi|365227469|gb|EHM68663.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus VCU006]
gi|365237688|gb|EHM78533.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21334]
gi|365243739|gb|EHM84407.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21340]
gi|365244337|gb|EHM84998.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21232]
gi|371981808|gb|EHO98970.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21333]
gi|371983585|gb|EHP00727.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21272]
gi|371985470|gb|EHP02538.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21283]
gi|374362509|gb|AEZ36614.1| hypothetical protein SAVC_02240 [Staphylococcus aureus subsp.
aureus VC40]
gi|375014253|gb|EHS07945.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375017199|gb|EHS10821.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-3]
gi|375017838|gb|EHS11441.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-24]
gi|375026161|gb|EHS19547.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-91]
gi|375027253|gb|EHS20618.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-55]
gi|375031920|gb|EHS25180.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-105]
gi|375033416|gb|EHS26609.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-88]
gi|375036054|gb|EHS29141.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-122]
gi|375037657|gb|EHS30676.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-111]
gi|375368083|gb|EHS72010.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-125]
gi|375369595|gb|EHS73468.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-157]
gi|375372470|gb|EHS76210.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-189]
gi|377696088|gb|EHT20444.1| hypothetical protein SACIG1165_1013 [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377696448|gb|EHT20803.1| hypothetical protein SACIG1114_1053 [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377698338|gb|EHT22686.1| hypothetical protein SACIG1057_1078 [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377716277|gb|EHT40460.1| hypothetical protein SACIG1769_1187 [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377716427|gb|EHT40609.1| hypothetical protein SACIG1750_0973 [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377719219|gb|EHT43389.1| hypothetical protein SACIG1835_0678 [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377722547|gb|EHT46672.1| hypothetical protein SACIG1096_1081 [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377724577|gb|EHT48692.1| hypothetical protein SACIG547_1217 [Staphylococcus aureus subsp.
aureus CIG547]
gi|377727122|gb|EHT51229.1| hypothetical protein SACIG1150_1058 [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377732675|gb|EHT56725.1| hypothetical protein SACIG1213_1064 [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377737758|gb|EHT61767.1| hypothetical protein SACIG1612_1136 [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377741809|gb|EHT65794.1| hypothetical protein SACIG1770_1085 [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377746053|gb|EHT70024.1| hypothetical protein SACIG2018_0893 [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377758327|gb|EHT82212.1| hypothetical protein SACIGC340D_0981 [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377766641|gb|EHT90474.1| hypothetical protein SACIGC345D_0572 [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377767311|gb|EHT91109.1| hypothetical protein SACIGC348_1135 [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377771241|gb|EHT94995.1| hypothetical protein SACIGC128_0985 [Staphylococcus aureus subsp.
aureus CIGC128]
gi|377771888|gb|EHT95641.1| hypothetical protein SACIGC93_0685 [Staphylococcus aureus subsp.
aureus CIGC93]
gi|383361737|gb|EID39103.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-M]
gi|383971329|gb|EID87407.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus CO-23]
gi|385195566|emb|CCG15175.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387720920|gb|EIK08811.1| hypothetical protein MQE_02004 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387721085|gb|EIK08972.1| hypothetical protein MQC_01791 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387722495|gb|EIK10293.1| hypothetical protein MQA_01627 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387727534|gb|EIK15047.1| hypothetical protein MQG_02013 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387729542|gb|EIK16977.1| hypothetical protein MQI_01626 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731582|gb|EIK18864.1| hypothetical protein MQK_01842 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387738385|gb|EIK25428.1| hypothetical protein MQO_02119 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387739636|gb|EIK26632.1| hypothetical protein MQQ_01972 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387739798|gb|EIK26781.1| hypothetical protein MQM_02079 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387746901|gb|EIK33621.1| hypothetical protein MQS_02295 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387748311|gb|EIK35000.1| hypothetical protein MQU_02278 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387749116|gb|EIK35760.1| hypothetical protein MQW_02342 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394330212|gb|EJE56304.1| hypothetical protein Newbould305_1056 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402346729|gb|EJU81806.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus CM05]
gi|421956983|gb|EKU09307.1| Ribonuclease III family protein [Staphylococcus aureus CN79]
gi|436431900|gb|ELP29252.1| hypothetical protein SASA_00140 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436505874|gb|ELP41733.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21282]
gi|443406103|gb|ELS64688.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443409722|gb|ELS68214.1| ribonuclease III domain protein [Staphylococcus aureus subsp.
aureus 21196]
gi|445547774|gb|ELY16036.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|445562738|gb|ELY18904.1| ribonuclease III [Staphylococcus aureus KT/Y21]
Length = 134
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|312869697|ref|ZP_07729844.1| RNase3 domain protein [Lactobacillus oris PB013-T2-3]
gi|311094746|gb|EFQ53043.1| RNase3 domain protein [Lactobacillus oris PB013-T2-3]
Length = 137
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L LS + + V + Q AL+ + D L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLSTGLSKPTKLQHIATHYVSAKAQAALIDLMKADELLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
AEE + G+N AN+ T + Y ++ E L GYL L+
Sbjct: 69 AEEWAYFKRGRN---ANSHTHAKHTSVLTYRISTGFEALMGYLQLSG 112
>gi|313124318|ref|YP_004034577.1| ribonuclease iii family protein [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|422844230|ref|ZP_16890940.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM
20072]
gi|312280881|gb|ADQ61600.1| Ribonuclease III family protein [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325685667|gb|EGD27749.1| ribonuclease III [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 147
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
+ +LAY+GD IYE RRH + L + V + Q L+ K+L+ +L+
Sbjct: 17 LSGQTLAYLGDGIYEAAIRRHLIKGGMLKPQNLQRAATHYVSAKAQAGLIAKMLDTGFLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
EE R G+N A T TK + A Y ++ E + GYL L R++++++
Sbjct: 77 KEEETAYRRGRN---AKTHTKAKNTSLATYEMSTGFEAVFGYLDLAGEEGRVKELIA 130
>gi|379020301|ref|YP_005296963.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus M013]
gi|418561560|ref|ZP_13126048.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21262]
gi|418950136|ref|ZP_13502338.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-160]
gi|359829610|gb|AEV77588.1| Ribonuclease III family protein [Staphylococcus aureus subsp.
aureus M013]
gi|371977417|gb|EHO94688.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21262]
gi|375377660|gb|EHS81111.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-160]
Length = 134
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTNEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLAKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|229027938|ref|ZP_04184091.1| hypothetical protein bcere0028_770 [Bacillus cereus AH1271]
gi|228733326|gb|EEL84155.1| hypothetical protein bcere0028_770 [Bacillus cereus AH1271]
Length = 135
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L +R+ V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTNFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRYSTAFEALIGYHHLLNNRERLDEIVYK 121
>gi|254828700|ref|ZP_05233387.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|255027362|ref|ZP_05299348.1| YazC protein [Listeria monocytogenes FSL J2-003]
gi|284800535|ref|YP_003412400.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578]
gi|284993721|ref|YP_003415489.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923]
gi|386042576|ref|YP_005961381.1| ribonuclease III family protein [Listeria monocytogenes 10403S]
gi|404409474|ref|YP_006695062.1| hypothetical protein LMOSLCC5850_0235 [Listeria monocytogenes
SLCC5850]
gi|404412341|ref|YP_006697928.1| hypothetical protein LMOSLCC7179_0235 [Listeria monocytogenes
SLCC7179]
gi|258601105|gb|EEW14430.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|284056097|gb|ADB67038.1| hypothetical protein LM5578_0282 [Listeria monocytogenes 08-5578]
gi|284059188|gb|ADB70127.1| hypothetical protein LM5923_0281 [Listeria monocytogenes 08-5923]
gi|345535810|gb|AEO05250.1| ribonuclease III family protein [Listeria monocytogenes 10403S]
gi|404229300|emb|CBY50704.1| hypothetical protein LMOSLCC5850_0235 [Listeria monocytogenes
SLCC5850]
gi|404238040|emb|CBY59441.1| hypothetical protein LMOSLCC7179_0235 [Listeria monocytogenes
SLCC7179]
Length = 136
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL + +RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGDVDRLQEWMEK 124
>gi|295094034|emb|CBK83125.1| Uncharacterized protein conserved in bacteria [Coprococcus sp.
ART55/1]
Length = 185
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIE-------EYNNRVMAVVRCETQDALL 165
PR ++ SLAYIGD +++L L L++ +Y+ V +V+ E Q +
Sbjct: 20 PRE-YSPLSLAYIGDSVFDL------LIKTLAVTKDNKQAYKYHKEVSQLVKAEAQAGYI 72
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
LL++ L+ EE + + G+N + + T + A Y A+ E L G+LYL
Sbjct: 73 MYLLDNGLLTEEEEWIYKRGRNTKTHS--TAKNATVGQYRMATGFECLIGFLYL 124
>gi|104774469|ref|YP_619449.1| hypothetical protein Ldb1679 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514574|ref|YP_813480.1| ribonuclease III family protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300811851|ref|ZP_07092317.1| RNase3 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|385816250|ref|YP_005852641.1| hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418030449|ref|ZP_12668944.1| hypothetical protein LDBUL1632_01738 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418036166|ref|ZP_12674599.1| hypothetical protein LDBUL1519_01299 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103423550|emb|CAI98468.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093889|gb|ABJ59042.1| Ribonuclease III family protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300497170|gb|EFK32226.1| RNase3 domain protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|325126287|gb|ADY85617.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354687171|gb|EHE87275.1| hypothetical protein LDBUL1632_01738 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354688734|gb|EHE88763.1| hypothetical protein LDBUL1519_01299 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 147
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
+ +LAY+GD IYE RRH + L + V + Q L+ K+L+ +L+
Sbjct: 17 LSGQTLAYLGDGIYEAAIRRHLIKGGMLKPQNLQRAATHYVSAKAQAGLIAKMLDTGFLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
EE R G+N A T TK + A Y ++ E + GYL L R++++++
Sbjct: 77 EEEETAYRRGRN---AKTHTKAKNTSLATYEMSTGFEAVFGYLDLAGEEGRVKELIA 130
>gi|322392298|ref|ZP_08065759.1| ribonuclease III [Streptococcus peroris ATCC 700780]
gi|321144833|gb|EFX40233.1| ribonuclease III [Streptococcus peroris ATCC 700780]
Length = 128
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F ++ + + V + Q L+ ++ +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFKGMTKPNKLHKEATKYVSAKAQAHLISLMIEEEV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLETLIS 120
>gi|82750238|ref|YP_415979.1| hypothetical protein SAB0481 [Staphylococcus aureus RF122]
gi|82655769|emb|CAI80169.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 134
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTNEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|184154738|ref|YP_001843078.1| hypothetical protein LAF_0262 [Lactobacillus fermentum IFO 3956]
gi|227514005|ref|ZP_03944054.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|260663233|ref|ZP_05864125.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|183226082|dbj|BAG26598.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227087649|gb|EEI22961.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|260552425|gb|EEX25476.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 137
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L +S + V + Q AL+ K+ + YL+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLALGMSKPNRLQKKATNYVSAKAQAALILKMQEEDYLT 68
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTN 221
EE + G+N AN+ T + + + Y +++ E L GYL L
Sbjct: 69 EEEWAYYKRGRN---ANSYTHAKNTSVLTYRQSTGFEALFGYLQLAG 112
>gi|425738225|ref|ZP_18856491.1| hypothetical protein C273_07512 [Staphylococcus massiliensis S46]
gi|425480235|gb|EKU47403.1| hypothetical protein C273_07512 [Staphylococcus massiliensis S46]
Length = 131
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA----VVRCETQDALLQKLLND 171
+ N +LAY+GD + + + RRH + I+ NR+ V ++Q L L
Sbjct: 7 LLNPLTLAYMGDAVLDQHVRRHIIRK---IQSKPNRLHHEATRYVSAKSQAETLMTLEAV 63
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + +E DV++ G+N S +T+ K Y ++S LE + GYLYL + RLE ++
Sbjct: 64 DFFTEDESDVIKRGRNAKS-HTKAK-NTDVQTYRKSSGLEAVIGYLYLDHQTERLEALLE 121
Query: 231 KL 232
+
Sbjct: 122 DI 123
>gi|46906473|ref|YP_012862.1| hypothetical protein LMOf2365_0252 [Listeria monocytogenes serotype
4b str. F2365]
gi|46879737|gb|AAT03039.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
str. F2365]
Length = 141
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL +RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGELDRLQEWMEK 124
>gi|422709040|ref|ZP_16766554.1| RNase3 domain protein [Enterococcus faecalis TX0027]
gi|315036334|gb|EFT48266.1| RNase3 domain protein [Enterococcus faecalis TX0027]
Length = 131
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAGEMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS---- 230
EE + + G+N S + A Y A+ E+L GYL+LT RLE++++
Sbjct: 67 -EEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYLHLTQQKERLEELINWCIK 123
Query: 231 KLGFTN 236
K+G TN
Sbjct: 124 KVGETN 129
>gi|222530017|ref|YP_002573899.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
gi|222456864|gb|ACM61126.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
Length = 145
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YEL+ R + P L+ Y R V+ +Q ++K+ + L +E+
Sbjct: 22 AYIGDAVYELFVRNKIVAENPDLTPYLYYLRTTMYVKASSQAMAIKKIYEE--LDEDEKR 79
Query: 181 VVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+V+ G+N A +T + A + Y A++LE L GYLYL N RL ++S+
Sbjct: 80 IVKRGRN---AKPKTIPKNAKLSDYKYATALEALIGYLYLENNIERLNYILSQ 129
>gi|445060492|ref|YP_007385896.1| hypothetical protein A284_10695 [Staphylococcus warneri SG1]
gi|443426549|gb|AGC91452.1| hypothetical protein A284_10695 [Staphylococcus warneri SG1]
Length = 132
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R++ + L + NR+ + V ++Q L+ L+ +
Sbjct: 8 LLNPLTLAYMGDAVLDQHVRKYIV---LKLRSKPNRLHQMSKLYVSAKSQAQTLETLIEE 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE D+++ G+N A + TK + Y ++S+LE++ G+LYL + RL+ ++
Sbjct: 65 PWFTEEEMDILKRGRN---AKSYTKAKNTDVQTYRKSSALESVIGFLYLEHREERLKVLL 121
Query: 230 SKL 232
K+
Sbjct: 122 DKI 124
>gi|290890984|ref|ZP_06554048.1| hypothetical protein AWRIB429_1438 [Oenococcus oeni AWRIB429]
gi|419758186|ref|ZP_14284503.1| ribonuclease III family protein [Oenococcus oeni AWRIB304]
gi|419856391|ref|ZP_14379112.1| ribonuclease III family protein [Oenococcus oeni AWRIB202]
gi|419859417|ref|ZP_14382072.1| ribonuclease III family protein [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421184575|ref|ZP_15641991.1| ribonuclease III family protein [Oenococcus oeni AWRIB318]
gi|421185767|ref|ZP_15643166.1| ribonuclease III family protein [Oenococcus oeni AWRIB418]
gi|421188385|ref|ZP_15645724.1| ribonuclease III family protein [Oenococcus oeni AWRIB419]
gi|421192597|ref|ZP_15649850.1| ribonuclease III family protein [Oenococcus oeni AWRIB553]
gi|421194899|ref|ZP_15652111.1| ribonuclease III family protein [Oenococcus oeni AWRIB568]
gi|421196769|ref|ZP_15653950.1| ribonuclease III family protein [Oenococcus oeni AWRIB576]
gi|290479383|gb|EFD88043.1| hypothetical protein AWRIB429_1438 [Oenococcus oeni AWRIB429]
gi|399904808|gb|EJN92259.1| ribonuclease III family protein [Oenococcus oeni AWRIB304]
gi|399965942|gb|EJO00508.1| ribonuclease III family protein [Oenococcus oeni AWRIB419]
gi|399966177|gb|EJO00726.1| ribonuclease III family protein [Oenococcus oeni AWRIB318]
gi|399969030|gb|EJO03461.1| ribonuclease III family protein [Oenococcus oeni AWRIB418]
gi|399974175|gb|EJO08338.1| ribonuclease III family protein [Oenococcus oeni AWRIB553]
gi|399976088|gb|EJO10114.1| ribonuclease III family protein [Oenococcus oeni AWRIB576]
gi|399976683|gb|EJO10696.1| ribonuclease III family protein [Oenococcus oeni AWRIB568]
gi|410496966|gb|EKP88445.1| ribonuclease III family protein [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499436|gb|EKP90867.1| ribonuclease III family protein [Oenococcus oeni AWRIB202]
Length = 134
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
FN SLA+IGD + EL R + L L+ + + R V + L + + +L+
Sbjct: 8 FNGLSLAFIGDAVDELKIRTYLLSTGLTKVNDLQRRSKEFVSAKAHAKLFFLMEKEGFLT 67
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
EE ++ + G+N ++ TK + A Y ++ +E L GYLYL ++RL +++
Sbjct: 68 EEESNIFKRGRN---SHPHTKAKNTDIATYQISTGVEALLGYLYLNKESSRLNEII 120
>gi|423071177|ref|ZP_17059952.1| hypothetical protein HMPREF9177_01269 [Streptococcus intermedius
F0413]
gi|424788449|ref|ZP_18215203.1| ribonuclease III domain protein [Streptococcus intermedius BA1]
gi|355364539|gb|EHG12271.1| hypothetical protein HMPREF9177_01269 [Streptococcus intermedius
F0413]
gi|422112670|gb|EKU16442.1| ribonuclease III domain protein [Streptococcus intermedius BA1]
Length = 134
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH +F L+ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLIFQGLTKPNQLHREATKYVSAKAQANLISLMLKEEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
L+ +E ++ + G+N AN+ TK + A Y ++ E + GYL++T A RLE+++
Sbjct: 65 LTEKEEEIYKRGRN---ANSHTKAKNADIVTYRMSTGFEAVMGYLHMTGAIERLEELI 119
>gi|389816096|ref|ZP_10207283.1| hypothetical protein A1A1_04452 [Planococcus antarcticus DSM 14505]
gi|388465360|gb|EIM07678.1| hypothetical protein A1A1_04452 [Planococcus antarcticus DSM 14505]
Length = 139
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
NA +LAY+GD +YE R H L S +R V + Q +L++L +++L+
Sbjct: 12 LNALALAYMGDAVYEQSIREHLLRSGRSKPNILHRQSTTFVSAKAQAMVLKRLTEENFLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
E ++R G+N S + + YN +++ E + G+LYL R+++++S
Sbjct: 72 EAELAIMRRGRNAKSGS--VPKNTDVQTYNFSTAFEAVLGWLYLKEEQARVDEIIS 125
>gi|384549395|ref|YP_005738647.1| ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159]
gi|302332244|gb|ADL22437.1| ribonuclease III [Staphylococcus aureus subsp. aureus JKD6159]
Length = 134
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEVLLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|357012835|ref|ZP_09077834.1| hypothetical protein PelgB_25427 [Paenibacillus elgii B69]
Length = 155
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 108 PKVGKPRSVFNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDA 163
P +PR + N LAY+GD +YE++ R++ + P + + R V + Q
Sbjct: 19 PPSREPR-LLNPLVLAYVGDAVYEVFIRQYVVSQTNHKPNHLHRLSTR---YVSAKAQAK 74
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNA 222
LQ+ L L+ EE D+V+ G+N S T + A Y +++ E L GYL Y+
Sbjct: 75 ALQRWL--PILTEEETDIVKRGRNAKSGT--TAKNADVLEYRHSTAFECLIGYLYYMHRW 130
Query: 223 NRLEDVM 229
RL+ ++
Sbjct: 131 ERLQQLL 137
>gi|312621708|ref|YP_004023321.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
gi|312202175|gb|ADQ45502.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
Length = 145
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 123 AYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
AYIGD +YEL+ R + P L Y R V+ +Q ++K+ + L +E+
Sbjct: 22 AYIGDAVYELFVRNKIIAENPDLPPYLYYLRTTMYVKASSQAMAIKKIYEE--LDEDEKR 79
Query: 181 VVRWGKNVGSANTRT-KRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+V+ G+N A +T + A + Y A++LE L GYLYL N RL ++S+
Sbjct: 80 IVKRGRN---AKPKTIPKNAKLSDYKYATALEALIGYLYLENNIERLNYILSQ 129
>gi|386712446|ref|YP_006178768.1| ribonuclease MrnC [Halobacillus halophilus DSM 2266]
gi|384072001|emb|CCG43491.1| ribonuclease MrnC [Halobacillus halophilus DSM 2266]
Length = 136
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YELY R+H L + + + + V +Q + L+ EE+
Sbjct: 13 ALAYMGDSVYELYVRKHLLEQGKIQPQRLHKAAVKFVSAVSQAQAVAYWQEKGLLTEEEQ 72
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
V+R G+N S + + Y ++ E + G+LYL+ RLE+++ +
Sbjct: 73 GVLRRGRNAKSGS--VPKSTNVQTYRYSTGFEAVLGFLYLSGKTGRLEELIEQ 123
>gi|449887128|ref|ZP_21786617.1| hypothetical protein SMU104_04772 [Streptococcus mutans SA41]
gi|449253370|gb|EMC51327.1| hypothetical protein SMU104_04772 [Streptococcus mutans SA41]
Length = 118
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 129 IYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKN 187
+Y Y R+H +F L+ + + + V + Q L+ K+L LS +E D+ R G+N
Sbjct: 1 MYSTYIRKHLIFQGLTKPNQLHRKTTRYVSAKAQAMLITKMLEAQLLSEKEEDIYRRGRN 60
Query: 188 VGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
AN+ TK + Y ++ E + GYL++T RLE+++
Sbjct: 61 ---ANSHTKAKNTDVVTYKMSTGFEAVMGYLHMTEQIKRLEELI 101
>gi|395240942|ref|ZP_10417964.1| Ribonuclease III [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475450|emb|CCI87941.1| Ribonuclease III [Lactobacillus gigeriorum CRBIP 24.85]
Length = 144
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYL 174
V + +LAY GD +YE++ RRH + + + R V + Q AL+ K+ +D+YL
Sbjct: 13 VLSGQTLAYYGDAVYEVFIRRHLIKAGIVKPQVLQREATHYVSAKAQAALITKMQDDNYL 72
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN 223
+ E + G+N A T TK + Y ++ E + GYL L + +
Sbjct: 73 AEAELTAFKRGRN---AKTYTKAKNTSLRTYQLSTGFEAMIGYLALDDQD 119
>gi|315037581|ref|YP_004031149.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|385816939|ref|YP_005853329.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
gi|312275714|gb|ADQ58354.1| Ribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|327182877|gb|AEA31324.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
Length = 147
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVCSGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN 223
+E R G+N A + TK + Y ++ E + GYL L N +
Sbjct: 77 DDELTAFRRGRN---AKSHTKAKHTSLKTYQLSTGFEAMIGYLNLLNQD 122
>gi|302024502|ref|ZP_07249713.1| hypothetical protein Ssui0_08139 [Streptococcus suis 05HAS68]
Length = 118
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 126 GDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRW 184
GD +Y +Y RRH +F L+ + + V + Q L+ LL L+ +E ++ +
Sbjct: 5 GDAVYSMYVRRHLIFKGLTKPNKLHGEANKYVSAKAQAGLISALLEAQLLTEKEEEIYKR 64
Query: 185 GKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
G+N N+ TK + A Y ++ E + GYL++T RL++++
Sbjct: 65 GRNT---NSHTKAKNADVVTYRMSTGFEAVLGYLHMTEQTERLDELVG 109
>gi|384546811|ref|YP_005736064.1| putative cysteinyl-tRNA synthetase [Staphylococcus aureus subsp.
aureus ED133]
gi|298693862|gb|ADI97084.1| putative cysteinyl-tRNA synthetase [Staphylococcus aureus subsp.
aureus ED133]
Length = 123
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 1 MNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQE 57
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++K
Sbjct: 58 WFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNK 115
Query: 232 L 232
+
Sbjct: 116 I 116
>gi|159903236|ref|YP_001550580.1| hypothetical protein P9211_06951 [Prochlorococcus marinus str. MIT
9211]
gi|159888412|gb|ABX08626.1| Conserved hypothetical protein [Prochlorococcus marinus str. MIT
9211]
Length = 144
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA++GD ++E++ R P +E + V++ V+ E Q LQ + + +L+ E+D
Sbjct: 21 QLAWLGDAVWEMHQRLLLCRKPAKSKELHKTVVSRVKAEAQADALQMI--NVFLTDLEKD 78
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTN 236
V + + R R+ A Y +A+ ETL G+L+L + RL ++ +L T+
Sbjct: 79 FV---RRGRNRVGRGSRKVEIATYAKATGFETLIGWLFLKDPARLAQLLDRLEETH 131
>gi|254555717|ref|YP_003062134.1| hypothetical protein JDM1_0548 [Lactobacillus plantarum JDM1]
gi|300769738|ref|ZP_07079620.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308179698|ref|YP_003923826.1| hypothetical protein LPST_C0510 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031614|ref|YP_004888605.1| ribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274314|ref|ZP_12889812.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum NC8]
gi|448820268|ref|YP_007413430.1| Mini-ribonuclease 3 [Lactobacillus plantarum ZJ316]
gi|380876962|sp|F9UL76.1|MRNC_LACPL RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|254044644|gb|ACT61437.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
gi|300492646|gb|EFK27832.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308045189|gb|ADN97732.1| hypothetical protein LPST_C0510 [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240857|emb|CCC78091.1| ribonuclease III [Lactobacillus plantarum WCFS1]
gi|376009880|gb|EHS83206.1| ribonuclease III [Lactobacillus plantarum subsp. plantarum NC8]
gi|448273765|gb|AGE38284.1| Mini-ribonuclease 3 [Lactobacillus plantarum ZJ316]
Length = 136
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R+H + + + ++ V + Q AL++++ + L+
Sbjct: 8 LNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLT 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
E DV + G+N S + + Y ++ E + GYL LT A+R+ ++
Sbjct: 68 PTEVDVFKRGRNAKSHT--SAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAEL 119
>gi|254825716|ref|ZP_05230717.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|255520316|ref|ZP_05387553.1| YazC protein [Listeria monocytogenes FSL J1-175]
gi|405754325|ref|YP_006677789.1| hypothetical protein LMOSLCC2540_0246 [Listeria monocytogenes
SLCC2540]
gi|293594960|gb|EFG02721.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|404223525|emb|CBY74887.1| hypothetical protein LMOSLCC2540_0246 [Listeria monocytogenes
SLCC2540]
Length = 136
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL +RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEVDRLQEWMEK 124
>gi|259047743|ref|ZP_05738144.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175]
gi|259035934|gb|EEW37189.1| cysteine--tRNA ligase [Granulicatella adiacens ATCC 49175]
Length = 133
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAY+GD IYE+Y R H + L+ + + V + Q L+Q++L
Sbjct: 4 KNWKLLNGLALAYMGDGIYEVYVRNHVMQKGLTKPNQLHATATKFVSAKAQARLMQQMLE 63
Query: 171 DSYLSAEERDVV-RWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
EE + + G+N S + + A Y A+ E L GYLYL+ RLE++
Sbjct: 64 QENFLNEEELEIYKRGRN--SKSHTVAKNADVGTYRIATGFEALMGYLYLSGQQARLEEL 121
Query: 229 MS 230
++
Sbjct: 122 IN 123
>gi|325956063|ref|YP_004286673.1| ribonuclease III [Lactobacillus acidophilus 30SC]
gi|325332628|gb|ADZ06536.1| ribonuclease III [Lactobacillus acidophilus 30SC]
Length = 147
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVCGGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN 223
+E R G+N A + TK + Y ++ E + GYL L N +
Sbjct: 77 DDELTAFRRGRN---AKSHTKAKHTSLKTYQLSTGFEAMIGYLNLLNQD 122
>gi|435852953|ref|YP_007314272.1| hypothetical protein Halha_0165 [Halobacteroides halobius DSM 5150]
gi|433669364|gb|AGB40179.1| hypothetical protein Halha_0165 [Halobacteroides halobius DSM 5150]
Length = 135
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 104 LPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
P+ P++ P +SLAYIGD ++E++ R L + + V Q
Sbjct: 8 FPSRPRLLSP------SSLAYIGDSVFEVFIRTFLLEKGGKPNRLHQEAIKYVNATAQAN 61
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-A 222
LL++L + L+ EE +VR G+N T + A Y +++ E L GYLYL
Sbjct: 62 LLEELRPE--LTKEEAVIVRRGRNT---KTNSPSNVDQATYQYSTAFEALIGYLYLAGEE 116
Query: 223 NRLEDVMSKL 232
RL ++ +K+
Sbjct: 117 ERLLELFAKI 126
>gi|336392005|ref|ZP_08573404.1| hypothetical protein LcortK3_04367 [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 139
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y RRH L ++ ++ V + Q L++ +L S L+
Sbjct: 10 LNGIALAYMGDASYEVYIRRHLLSKGITKPTRLQHQATHFVSAKAQAGLIEAMLAQSMLN 69
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E + G+N AN+ T + Y ++ E L GYL L++ RL+++
Sbjct: 70 EAELSFYKRGRN---ANSHTHAKNTSVTTYRISTGFEALMGYLALSDQQERLDEL 121
>gi|315274657|ref|ZP_07869497.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313615714|gb|EFR89002.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 136
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K N +LAY+GD +YE + R + L + + + V + Q L+ ++
Sbjct: 5 KEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIA 64
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ +L+ EE + + G+N S G Y+ ++S E + GYLYL +RL++ M
Sbjct: 65 EGFLTEEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEMDRLQEWM 122
Query: 230 SK 231
K
Sbjct: 123 EK 124
>gi|402838095|ref|ZP_10886609.1| ribonuclease III domain protein [Eubacteriaceae bacterium OBRC8]
gi|402273804|gb|EJU22995.1| ribonuclease III domain protein [Eubacteriaceae bacterium OBRC8]
Length = 135
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDS 172
+ N +LAYIGDCI+E+Y R + L + +++ V+ + Q +++ L ++
Sbjct: 16 NCINTLALAYIGDCIWEIYVRNYVLAKNKFAKVNKLHLLSTKHVKAKAQADMVKTLKENN 75
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDV 228
+ D+V G+N + T + A YN A+ E L GYLY+ N ++L+++
Sbjct: 76 IIDENMWDIVLRGRN---SATNPPKNANVQEYNYATGFEALIGYLYIKKNYSKLDEI 129
>gi|291557886|emb|CBL35003.1| Uncharacterized protein conserved in bacteria [Eubacterium siraeum
V10Sc8a]
Length = 133
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 98 MGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVV 156
M YE P K +LA+ GD +YE+Y R + + +++ + + + V
Sbjct: 1 MMYEIMTPAEAKA------LGGLTLAFFGDSVYEVYVREQIVKLGTMPVDKLHKKAVQYV 54
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
Q + L+ EE ++ + G+N N R + Y RA+ +E L GY
Sbjct: 55 NAGFQSYAYDIIAEQ--LTEEETEIFKRGRNATGNNV--PRSSNPKDYRRATGMEALFGY 110
Query: 217 LYLTNAN-RLEDVMSKL 232
LYLT N R++++ K+
Sbjct: 111 LYLTGQNDRIKELFEKI 127
>gi|239636928|ref|ZP_04677926.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603]
gi|239597476|gb|EEQ79975.1| cysteinyl-tRNA synthetase [Staphylococcus warneri L37603]
Length = 132
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L + NR+ + V ++Q L+ L+ +
Sbjct: 8 LLNPLTLAYMGDAVLDQHVREYIV---LKLRSKPNRLHQMSKLYVSAKSQAQTLETLIGE 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
++ + EE D+++ G+N A + TK + Y ++S+LE + G+LYL + RL+ ++
Sbjct: 65 AWFTEEEMDILKRGRN---AKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKALL 121
Query: 230 SKL 232
+K+
Sbjct: 122 NKI 124
>gi|160933798|ref|ZP_02081186.1| hypothetical protein CLOLEP_02659 [Clostridium leptum DSM 753]
gi|156867675|gb|EDO61047.1| RNase3 domain protein [Clostridium leptum DSM 753]
Length = 131
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 21/108 (19%)
Query: 121 SLAYIGDCIYELYARRHFL---------FPPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+LA++GD +Y+L R + L++E+ V+C+ Q ++K+L
Sbjct: 19 TLAFVGDGVYDLMVRERLVCQANRQAGKLHKLAVEQ--------VKCQAQAQRMEKIL-- 68
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
L+ EE+ V + G+N + T T + A +A Y+ A+ +E L GYLYL
Sbjct: 69 PLLTEEEQSVYKRGRN--AHTTHTPKNATSADYHSATGMEALFGYLYL 114
>gi|227824944|ref|ZP_03989776.1| ribonuclease III [Acidaminococcus sp. D21]
gi|352684344|ref|YP_004896329.1| ribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|226905443|gb|EEH91361.1| ribonuclease III [Acidaminococcus sp. D21]
gi|350278999|gb|AEQ22189.1| ribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 154
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLS-----IEEYNNR-VMAVVRCETQDALLQKLL 169
+ N LAYIGD ++ LY R+ L P+S + + R V AV++ + D +
Sbjct: 28 LINPIELAYIGDAVFSLYVRKRLL--PVSGHVQVLHDLAARMVSAVMQAKAMDGI----- 80
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+ L+ E VVR G+N S ++ A Y + ++ E L G+LYLT +++
Sbjct: 81 -EPQLTEAEAVVVRRGRNTKSTVPKS---ATVREYRQGTAFEALMGWLYLTGETARLEIL 136
Query: 230 SKLGFT 235
K FT
Sbjct: 137 MKASFT 142
>gi|226222869|ref|YP_002756976.1| YazC protein [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254853493|ref|ZP_05242841.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254932459|ref|ZP_05265818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254991760|ref|ZP_05273950.1| YazC protein [Listeria monocytogenes FSL J2-064]
gi|300764635|ref|ZP_07074627.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017]
gi|386731005|ref|YP_006204501.1| YazC protein [Listeria monocytogenes 07PF0776]
gi|404279790|ref|YP_006680688.1| hypothetical protein LMOSLCC2755_0238 [Listeria monocytogenes
SLCC2755]
gi|404285607|ref|YP_006692193.1| hypothetical protein LMOSLCC2482_0240 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405748583|ref|YP_006672049.1| hypothetical protein LMOATCC19117_0248 [Listeria monocytogenes ATCC
19117]
gi|405751457|ref|YP_006674922.1| hypothetical protein LMOSLCC2378_0253 [Listeria monocytogenes
SLCC2378]
gi|406703013|ref|YP_006753367.1| hypothetical protein LMOL312_0238 [Listeria monocytogenes L312]
gi|417314290|ref|ZP_12100991.1| YazC protein [Listeria monocytogenes J1816]
gi|417316546|ref|ZP_12103190.1| YazC protein [Listeria monocytogenes J1-220]
gi|424713105|ref|YP_007013820.1| Mini-ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424821971|ref|ZP_18246984.1| Ribonuclease III [Listeria monocytogenes str. Scott A]
gi|225875331|emb|CAS04028.1| Putative YazC protein [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258606865|gb|EEW19473.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293584015|gb|EFF96047.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|300514742|gb|EFK41797.1| hypothetical protein LMHG_11119 [Listeria monocytogenes FSL N1-017]
gi|328467851|gb|EGF38891.1| YazC protein [Listeria monocytogenes J1816]
gi|328476081|gb|EGF46790.1| YazC protein [Listeria monocytogenes J1-220]
gi|332310651|gb|EGJ23746.1| Ribonuclease III [Listeria monocytogenes str. Scott A]
gi|384389763|gb|AFH78833.1| YazC protein [Listeria monocytogenes 07PF0776]
gi|404217783|emb|CBY69147.1| hypothetical protein LMOATCC19117_0248 [Listeria monocytogenes ATCC
19117]
gi|404220657|emb|CBY72020.1| hypothetical protein LMOSLCC2378_0253 [Listeria monocytogenes
SLCC2378]
gi|404226425|emb|CBY47830.1| hypothetical protein LMOSLCC2755_0238 [Listeria monocytogenes
SLCC2755]
gi|404244536|emb|CBY02761.1| hypothetical protein LMOSLCC2482_0240 [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406360043|emb|CBY66316.1| hypothetical protein LMOL312_0238 [Listeria monocytogenes L312]
gi|424012289|emb|CCO62829.1| Mini-ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 136
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL +RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGELDRLQEWMEK 124
>gi|357039769|ref|ZP_09101561.1| ribonuclease III [Desulfotomaculum gibsoniae DSM 7213]
gi|355357575|gb|EHG05348.1| ribonuclease III [Desulfotomaculum gibsoniae DSM 7213]
Length = 139
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLND 171
PR V ++ LAYIGD +YEL R + + ++ + + + + VR TQ + L D
Sbjct: 11 PREV-SSLVLAYIGDAVYELAVREYLVNQGITNVNKLHREAVQHVRASTQAKVFLAL--D 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+L+ E V R G+N + R Y ++ E+L GYLYL + +RLE++++
Sbjct: 68 GHLNKTEEAVARRGRNAKPGH--APRGDSIIEYRHSTGFESLVGYLYLKRDWSRLEEILN 125
>gi|417642978|ref|ZP_12293049.1| RNase3 domain protein [Staphylococcus warneri VCU121]
gi|330686232|gb|EGG97844.1| RNase3 domain protein [Staphylococcus epidermidis VCU121]
Length = 132
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R++ + L + NR+ + V ++Q L+ L+ +
Sbjct: 8 LLNPLTLAYMGDAVLDQHVRKYIV---LKLRSKPNRLHQMSKLYVSAKSQAQTLETLIEE 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE D+++ G+N A + TK + Y ++S+LE + G+LYL + RL+ ++
Sbjct: 65 PWFTEEEMDILKRGRN---AKSYTKAKNTDVQTYRKSSALEAVIGFLYLEHREERLKVLL 121
Query: 230 SKL 232
K+
Sbjct: 122 DKI 124
>gi|88808427|ref|ZP_01123937.1| hypothetical protein WH7805_02017 [Synechococcus sp. WH 7805]
gi|88787415|gb|EAR18572.1| hypothetical protein WH7805_02017 [Synechococcus sp. WH 7805]
Length = 136
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LA++GD ++EL+ R P + + V+A VR + Q L++L L+ E D+
Sbjct: 23 LAWLGDAVWELHQRLRHCRRPGRASDLHRSVVAEVRADAQALALERL--RPMLTEFESDL 80
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGS 238
V + + R R A Y +A+ ET+ G+LYL N RL ++ +L T +
Sbjct: 81 V---RRGRNRAGRGPRGGDPAAYGKATGFETMVGWLYLHNPTRLAQLLDRLEETESA 134
>gi|334338879|ref|YP_004543859.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334090233|gb|AEG58573.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 136
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R + + + + + + + VR Q L L + LS EE
Sbjct: 21 LAYIGDAVYELAVREYLVQRGMVKVNQLHRTAVKYVRAGAQAKALFSL--EDKLSEEEMA 78
Query: 181 VVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYLTNAN-RLEDVMS 230
VVR G+N S GA V Y A++LE L GYLY + R+ +++S
Sbjct: 79 VVRRGRNAKSGTPPK----GACVLEYRHATALEALIGYLYFKERHERVREIIS 127
>gi|289579165|ref|YP_003477792.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
gi|289528878|gb|ADD03230.1| ribonuclease III [Thermoanaerobacter italicus Ab9]
Length = 142
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLSAEERD 180
LA+IGD +Y LY R + ++ +R + V+ + Q ++K+ + LS +E+D
Sbjct: 28 LAFIGDAVYSLYIRTRIVAKKNQPVKFLHRETVKYVKAQAQAESIKKIYD--LLSEKEKD 85
Query: 181 VVRWGKNVGSANTRTKRRAGAAV--YNRASSLETLAGYLYLTNA-NRLEDVMS 230
+VR G+N+ S NT K G V Y A+ E L GYLYL RL++++
Sbjct: 86 IVRRGRNMKS-NTTPK---GVEVQDYRYATGFEALLGYLYLAGEFERLKNILE 134
>gi|167036781|ref|YP_001664359.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256752502|ref|ZP_05493359.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
gi|300915249|ref|ZP_07132564.1| ribonuclease III [Thermoanaerobacter sp. X561]
gi|307725173|ref|YP_003904924.1| ribonuclease III [Thermoanaerobacter sp. X513]
gi|320115203|ref|YP_004185362.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|380876971|sp|B0K5F7.2|MRNC_THEPX RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|166855615|gb|ABY94023.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256748637|gb|EEU61684.1| ribonuclease III [Thermoanaerobacter ethanolicus CCSD1]
gi|300888973|gb|EFK84120.1| ribonuclease III [Thermoanaerobacter sp. X561]
gi|307582234|gb|ADN55633.1| ribonuclease III [Thermoanaerobacter sp. X513]
gi|319928294|gb|ADV78979.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 142
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 122 LAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
LA+IGD +Y LY R + P++ + + V+ + Q ++++ + LS EE
Sbjct: 28 LAFIGDAVYSLYIRTKIVAQKNQPVNF--LHKETVKYVKAKAQAESVKRIYD--LLSEEE 83
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
+D+VR G+N+ S NT T + Y A+ E L GYLYL RL++++
Sbjct: 84 KDIVRRGRNMKS-NT-TPKGVEVQAYRYATGFEALLGYLYLAGEFERLKNILE 134
>gi|363891502|ref|ZP_09318681.1| hypothetical protein HMPREF9630_00266 [Eubacteriaceae bacterium
CM2]
gi|361965559|gb|EHL18541.1| hypothetical protein HMPREF9630_00266 [Eubacteriaceae bacterium
CM2]
Length = 135
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPL--SIEEYNNRVMAVVRCETQDALLQKLLNDS 172
+ N +LAYIGDCI+E+Y R + L + + + V+ + Q +++ L ++
Sbjct: 16 NCINTLALAYIGDCIWEIYVRNYVLAKNKFSKVNKLHLLSTKYVKAKAQADMVKTLKENN 75
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDV 228
+ D+V G+N + T + A YN A+ E L GYLY+ N ++L+++
Sbjct: 76 IIDENMWDIVLRGRN---SATNPPKNANVQEYNYATGFEALIGYLYIKKNYSKLDEI 129
>gi|270291199|ref|ZP_06197422.1| ribonuclease III family protein [Pediococcus acidilactici 7_4]
gi|427442552|ref|ZP_18925678.1| ribonuclease III family protein [Pediococcus lolii NGRI 0510Q]
gi|270280595|gb|EFA26430.1| ribonuclease III family protein [Pediococcus acidilactici 7_4]
gi|425786690|dbj|GAC46466.1| ribonuclease III family protein [Pediococcus lolii NGRI 0510Q]
Length = 137
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLNDS 172
N +LAY+GD YE+Y RRH + ++ NR+ V V + Q AL+ + +
Sbjct: 10 INGIALAYLGDAEYEVYIRRHLIEEGMT---KPNRLHHVATRYVSAKAQAALIDAMQEND 66
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLED 227
+L+ E + + G+N S + + Y ++ E + GYL LTN RL++
Sbjct: 67 FLTEAEWEAFKKGRNAKSHT--SAKNTSVLTYRISTGFEAIVGYLSLTNQTERLDE 120
>gi|290892619|ref|ZP_06555612.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404406693|ref|YP_006689408.1| hypothetical protein LMOSLCC2376_0210 [Listeria monocytogenes
SLCC2376]
gi|290557928|gb|EFD91449.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404240842|emb|CBY62242.1| hypothetical protein LMOSLCC2376_0210 [Listeria monocytogenes
SLCC2376]
Length = 136
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEVERLQEWMEK 124
>gi|239617977|ref|YP_002941299.1| hypothetical protein Kole_1605 [Kosmotoga olearia TBF 19.5.1]
gi|380876961|sp|C5CF30.1|MRNC_KOSOT RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|239506808|gb|ACR80295.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
Length = 145
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEY-NNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SL+++GD +Y LY R L Y +N + V + Q L+ + + +LS EER
Sbjct: 21 SLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVI--EKFLSEEER 78
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
+VR G N A ++R Y A++LE L GYL+L RLE+++ K+
Sbjct: 79 IIVRRGYNSRGA----RKRGDDENYKCATALEALVGYLFLKGRYRRLEELLEKV 128
>gi|319891495|ref|YP_004148370.1| ribonuclease III family protein [Staphylococcus pseudintermedius
HKU10-03]
gi|386320163|ref|YP_006016326.1| hypothetical protein SPSE_2256 [Staphylococcus pseudintermedius
ED99]
gi|317161191|gb|ADV04734.1| Ribonuclease III family protein [Staphylococcus pseudintermedius
HKU10-03]
gi|323465334|gb|ADX77487.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 133
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA----VVRCETQDALLQKLLND 171
+ N SLAY+GD + + Y R + + L ++ NR+ V ++Q L+ L+
Sbjct: 9 LLNPLSLAYVGDAVLDQYVRTYII---LKLQSKPNRLHQEAKRFVSAKSQAVTLEHLIAQ 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
+ + EE VV+ G+N A + TK + Y ++S LE + G+LYL + RLE ++
Sbjct: 66 DWFNEEELAVVKRGRN---AKSYTKAKNTDVQTYRKSSGLEAIIGFLYLEHQEERLEALL 122
>gi|323703778|ref|ZP_08115416.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|333922424|ref|YP_004496004.1| ribonuclease III [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323531247|gb|EGB21148.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|333747985|gb|AEF93092.1| ribonuclease III [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 134
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 122 LAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YEL A R FL + + + + VR Q L L + LS E
Sbjct: 21 LAYIGDAVYEL-AIRDFLVAQGLCKVNQLHRTAVKYVRAGAQARALFAL--EGKLSETEM 77
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
VVR G+N S + A Y A++LE L GYLYL + RL++++
Sbjct: 78 AVVRRGRNAKSGTV--PKGADVLEYRHATALEALIGYLYLQGQHQRLQEII 126
>gi|423320429|ref|ZP_17298301.1| hypothetical protein HMPREF9249_00301 [Lactobacillus crispatus
FB077-07]
gi|405605033|gb|EKB78100.1| hypothetical protein HMPREF9249_00301 [Lactobacillus crispatus
FB077-07]
Length = 147
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YEL RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYELIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+E R G+N A + TK + Y ++ E + GYL L N R+ D+
Sbjct: 77 DDELAAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLGKNDRVADL 128
>gi|293381070|ref|ZP_06627091.1| RNase3 domain protein [Lactobacillus crispatus 214-1]
gi|312977949|ref|ZP_07789695.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus crispatus CTV-05]
gi|423318250|ref|ZP_17296147.1| hypothetical protein HMPREF9250_01855 [Lactobacillus crispatus
FB049-03]
gi|290922370|gb|EFD99351.1| RNase3 domain protein [Lactobacillus crispatus 214-1]
gi|310895256|gb|EFQ44324.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus crispatus CTV-05]
gi|405596739|gb|EKB70072.1| hypothetical protein HMPREF9250_01855 [Lactobacillus crispatus
FB049-03]
Length = 147
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YEL RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYELIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+E R G+N A + TK + Y ++ E + GYL L N R+ D+
Sbjct: 77 DDELAAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLGKNDRVADL 128
>gi|163791189|ref|ZP_02185606.1| hypothetical protein CAT7_03819 [Carnobacterium sp. AT7]
gi|159873520|gb|EDP67607.1| hypothetical protein CAT7_03819 [Carnobacterium sp. AT7]
Length = 137
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K ++ N +LAY+GD IYE+Y R + + + + + V + Q L+ ++L
Sbjct: 4 KNWALLNGLALAYVGDAIYEIYIRDYLVGLGYTKPSQLHKMATHFVSAKGQSFLMHEMLA 63
Query: 171 -DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
+ +L+ EE + + G+N S + + + A Y A+ E+L GYL+L R+E++
Sbjct: 64 VEDFLTEEEVTMYKRGRN--SKSYTSAKNADITTYRVATGFESLMGYLHLAKQTERMEEL 121
Query: 229 M 229
+
Sbjct: 122 I 122
>gi|37523749|ref|NP_927126.1| hypothetical protein glr4180 [Gloeobacter violaceus PCC 7421]
gi|35214754|dbj|BAC92121.1| glr4180 [Gloeobacter violaceus PCC 7421]
Length = 106
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 138 FLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR 197
L PP ++ + +A VR Q L L +L+ EE D +R G+N G R
Sbjct: 1 MLLPPRRLQWLHGDTVACVRASAQAKLATCL--SPHLTVEEADWLRRGRNAGGT---VPR 55
Query: 198 RAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
R A Y A++ E L GYL+L + +RL ++
Sbjct: 56 RLDPATYRLATAFEALLGYLFLADRDRLGVIL 87
>gi|217965672|ref|YP_002351350.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|386006969|ref|YP_005925247.1| hypothetical protein lmo4a_0256 [Listeria monocytogenes L99]
gi|386025551|ref|YP_005946327.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|217334942|gb|ACK40736.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|307569779|emb|CAR82958.1| conserved hypothetical protein [Listeria monocytogenes L99]
gi|336022132|gb|AEH91269.1| putative ribonuclease III [Listeria monocytogenes M7]
Length = 136
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEVERLQEWMEK 124
>gi|418565981|ref|ZP_13130370.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21264]
gi|371971855|gb|EHO89247.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21264]
Length = 134
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFP----PLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKY---VSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE DV++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDVLKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
++
Sbjct: 126 EI 127
>gi|330718905|ref|ZP_08313505.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
Length = 136
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD IYE+ R++ L L+ + + V + + + + D L+
Sbjct: 9 LNGLALAYIGDAIYEIQVRQYLLSTGLTKVNDLQRHSKQFVSAKAHAKIFKCMTEDHVLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+E + + G+N A + TK + Y ++ +E L GYLYL+ +R+ ++M+
Sbjct: 69 DDELNYFKRGRN---AKSHTKAKNTDVVTYRISTGIEALFGYLYLSKQQDRITELMT 122
>gi|328958760|ref|YP_004376146.1| ribonuclease for 23S RNA maturation [Carnobacterium sp. 17-4]
gi|328675084|gb|AEB31130.1| ribonuclease for 23S RNA maturation [Carnobacterium sp. 17-4]
Length = 137
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K ++ N +LAY+GD IYE Y R + + + + + V + Q L+ ++L
Sbjct: 4 KNWALLNGLALAYVGDAIYETYIRDYLVGQGFTKPSQLHKTATHFVSAKAQSFLMHEMLA 63
Query: 171 -DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
+ +L+ EE + + G+N S + + + A Y A+ E+L GYL+L R+E++
Sbjct: 64 VEGFLTEEEVTMYKRGRN--SKSYTSAKNADITTYRVATGFESLMGYLHLAKRTERMEEL 121
Query: 229 M 229
+
Sbjct: 122 I 122
>gi|357639124|ref|ZP_09136997.1| RNase3 domain protein [Streptococcus urinalis 2285-97]
gi|418417937|ref|ZP_12991129.1| hypothetical protein HMPREF9318_01877 [Streptococcus urinalis
FB127-CNA-2]
gi|357587578|gb|EHJ56986.1| RNase3 domain protein [Streptococcus urinalis 2285-97]
gi|410869467|gb|EKS17428.1| hypothetical protein HMPREF9318_01877 [Streptococcus urinalis
FB127-CNA-2]
Length = 135
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLN 170
++ N +LA+ GD +Y + RR+ +F P + R V + Q L+Q +L+
Sbjct: 7 NLINGIALAFEGDAVYSYFIRRYLIFQGKTKPSQLHHLATR---FVSAKAQAYLIQTMLD 63
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
+ L+ +E + + G+N N+ TK + A Y ++ E L GYL +T +RL ++
Sbjct: 64 EGLLTDKEMAIYKRGRN---TNSHTKAKNADVVTYRMSTGFEALMGYLDMTLQKDRLREL 120
Query: 229 M 229
+
Sbjct: 121 I 121
>gi|73663534|ref|YP_302315.1| hypothetical protein SSP2225 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496049|dbj|BAE19370.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 128
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA----VVRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V ++Q L+ L+ +
Sbjct: 5 LLNPLTLAYMGDAVLDQHVRAYIV---LKLKAKPNRLHQEAKRYVSAKSQALTLESLMEN 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
+ S EE D+VR G+N A + TK + Y ++S LE + GYLYL
Sbjct: 62 EWFSEEELDIVRRGRN---AKSYTKAKNTDIQTYRKSSGLEAIIGYLYL 107
>gi|16802286|ref|NP_463771.1| hypothetical protein lmo0240 [Listeria monocytogenes EGD-e]
gi|255028570|ref|ZP_05300521.1| hypothetical protein LmonL_04056 [Listeria monocytogenes LO28]
gi|386049169|ref|YP_005967160.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|386052517|ref|YP_005970075.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404282672|ref|YP_006683569.1| hypothetical protein LMOSLCC2372_0242 [Listeria monocytogenes
SLCC2372]
gi|405757228|ref|YP_006686504.1| hypothetical protein LMOSLCC2479_0241 [Listeria monocytogenes
SLCC2479]
gi|81593002|sp|Q8YAB0.1|MRNC_LISMO RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|16409605|emb|CAD00767.1| lmo0240 [Listeria monocytogenes EGD-e]
gi|346423015|gb|AEO24540.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|346645168|gb|AEO37793.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404232174|emb|CBY53577.1| hypothetical protein LMOSLCC2372_0242 [Listeria monocytogenes
SLCC2372]
gi|404235110|emb|CBY56512.1| hypothetical protein LMOSLCC2479_0241 [Listeria monocytogenes
SLCC2479]
Length = 136
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEMERLQEWMEK 124
>gi|169830057|ref|YP_001700215.1| hypothetical protein Bsph_4641 [Lysinibacillus sphaericus C3-41]
gi|168994545|gb|ACA42085.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 137
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
NA +LAY+GD + E R H L P ++ R V + Q ++ ++++++
Sbjct: 12 LNALALAYMGDAVLEQKIREHLLRSGRVKPNTLHREATRY---VSAKAQSMIVHRMMDEN 68
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
YL+ EE V R G+N S + + Y +S E + G LYL N
Sbjct: 69 YLTEEELAVFRRGRNAKSGS--VPKNTDVQTYRNSSGFEAVLGSLYLLN 115
>gi|16799349|ref|NP_469617.1| hypothetical protein lin0272 [Listeria innocua Clip11262]
gi|422411611|ref|ZP_16488570.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|422414685|ref|ZP_16491642.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|423099300|ref|ZP_17087007.1| RNase3 domain protein [Listeria innocua ATCC 33091]
gi|16412701|emb|CAC95505.1| lin0272 [Listeria innocua Clip11262]
gi|313620931|gb|EFR92104.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|313625380|gb|EFR95170.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|370794198|gb|EHN61980.1| RNase3 domain protein [Listeria innocua ATCC 33091]
Length = 136
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL + RL++ M K
Sbjct: 70 DEEDRIAKRGRNAKSYTIPKNTDPG--TYSMSTSFEAVLGYLYLAGDMERLQEWMEK 124
>gi|337751745|ref|YP_004645907.1| hypothetical protein KNP414_07543 [Paenibacillus mucilaginosus
KNP414]
gi|386727441|ref|YP_006193767.1| hypothetical protein B2K_35765 [Paenibacillus mucilaginosus K02]
gi|336302934|gb|AEI46037.1| hypothetical protein KNP414_07543 [Paenibacillus mucilaginosus
KNP414]
gi|384094566|gb|AFH66002.1| hypothetical protein B2K_35765 [Paenibacillus mucilaginosus K02]
Length = 144
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 107 PPKVGKPRSVFNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQD 162
PP K + N LAY+GD IYE+Y R++ + P + + R V + Q
Sbjct: 16 PP--AKEPKLLNPLVLAYMGDAIYEMYIRQYVVSQTNHKPNHMHKLCTR---YVSAKAQA 70
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTN 221
L++ + L+ EE D+V+ G+N S + + + A Y +++ E L GYL YL
Sbjct: 71 KALERWM--PLLTEEETDIVKRGRNAKSGS--SAKNADILEYRHSTAFECLVGYLYYLGR 126
Query: 222 ANRLEDVM 229
RL++++
Sbjct: 127 WERLQELL 134
>gi|295425604|ref|ZP_06818291.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295064620|gb|EFG55541.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 147
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y RRH + + + R V + Q L+ K+ ++ LS
Sbjct: 17 LNGQTLAYLGDAVYEVYIRRHLVKGGIVRPQVLQREATHYVSAKAQAGLITKMRDEQMLS 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
E R G+N A T TK + Y ++ E + GYL L
Sbjct: 77 EIELTAFRRGRN---AKTHTKAKHTSLKTYQLSTGFEAMLGYLDL 118
>gi|58336687|ref|YP_193272.1| hypothetical protein LBA0349 [Lactobacillus acidophilus NCFM]
gi|227903248|ref|ZP_04021053.1| ribonuclease III [Lactobacillus acidophilus ATCC 4796]
gi|58254004|gb|AAV42241.1| hypothetical protein LBA0349 [Lactobacillus acidophilus NCFM]
gi|227869053|gb|EEJ76474.1| ribonuclease III [Lactobacillus acidophilus ATCC 4796]
Length = 147
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALITKMQDEEKLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN 223
E R G+N A + TK + Y ++ E + GYL L N N
Sbjct: 77 EAELAAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLNKN 122
>gi|227894573|ref|ZP_04012378.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
gi|227863732|gb|EEJ71153.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
Length = 147
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
+ +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ +D L+
Sbjct: 17 LSGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALITKMQDDDLLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
+E R G+N A + TK + Y ++ E + GYL L N +R+ ++
Sbjct: 77 EDELTAFRRGRN---AKSHTKAKHTSLKTYQLSTGFEAMIGYLDLQGNDDRVHEL 128
>gi|315659129|ref|ZP_07911994.1| ribonuclease III [Staphylococcus lugdunensis M23590]
gi|418637243|ref|ZP_13199568.1| RNase3 domain protein [Staphylococcus lugdunensis VCU139]
gi|315495853|gb|EFU84183.1| ribonuclease III [Staphylococcus lugdunensis M23590]
gi|374839383|gb|EHS02897.1| RNase3 domain protein [Staphylococcus lugdunensis VCU139]
Length = 134
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L + NR+ V ++Q L+KLL
Sbjct: 8 LLNPLTLAYMGDAVLDQHVRAYIV---LKLRSKPNRLHQAAKRYVSAKSQAQTLEKLLAQ 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE D+VR G+N A + TK + Y ++S++E + G+LYL RL ++
Sbjct: 65 QWFTEEELDIVRRGRN---AKSYTKAKNTDIQTYRKSSAIEAVIGFLYLEQREQRLNSLL 121
Query: 230 SKL 232
+++
Sbjct: 122 TEI 124
>gi|393198920|ref|YP_006460762.1| hypothetical protein SSIL_0193 [Solibacillus silvestris StLB046]
gi|327438251|dbj|BAK14616.1| uncharacterized protein [Solibacillus silvestris StLB046]
Length = 137
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
NA +LAY+GD + E R H + P ++ + V ++Q ++ +++ ++
Sbjct: 12 LNALALAYMGDAVLEQRIREHLILSGRAKPNTL---HKEATKYVSAKSQSNIVHRMIEEN 68
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
YL+ EE+ V R G+N S + + Y +S E + G+L+L+
Sbjct: 69 YLTEEEQAVFRRGRNAKSGS--VPKNTDVRTYRNSSGFEAVLGFLFLS 114
>gi|289551669|ref|YP_003472573.1| cysteinyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
gi|385785216|ref|YP_005761389.1| hypothetical protein SLUG_22760 [Staphylococcus lugdunensis
N920143]
gi|289181200|gb|ADC88445.1| putative cysteinyl-tRNA synthetase [Staphylococcus lugdunensis
HKU09-01]
gi|339895472|emb|CCB54800.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
Length = 131
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L + NR+ V ++Q L+KLL
Sbjct: 5 LLNPLTLAYMGDAVLDQHVRAYIV---LKLRSKPNRLHQAAKRYVSAKSQAQTLEKLLAQ 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE D+VR G+N A + TK + Y ++S++E + G+LYL RL ++
Sbjct: 62 QWFTEEELDIVRRGRN---AKSYTKAKNTDIQTYRKSSAIEAVIGFLYLEQREQRLNSLL 118
Query: 230 SKL 232
+++
Sbjct: 119 TEI 121
>gi|157364333|ref|YP_001471100.1| hypothetical protein Tlet_1480 [Thermotoga lettingae TMO]
gi|157314937|gb|ABV34036.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 125
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+++AYIGD IY LY + L + ++ + V ++ E Q +L+ LSAEE
Sbjct: 9 STMAYIGDAIYSLYCKVKSL-KLMKVKAIHKEVNKIISREGQARSFDRLVE--LLSAEEF 65
Query: 180 DVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLT-NANRLEDVMSKLGFTNG 237
+V+ + N+R ++ G + Y ++++LE L GYLYL N RL D++ K+ N
Sbjct: 66 SLVK-----RALNSRAAKKYGNDIFYRKSTALEALIGYLYLKGNKERLIDLL-KIAVEND 119
Query: 238 SSTQM 242
++
Sbjct: 120 KDDRL 124
>gi|47097640|ref|ZP_00235160.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|254913470|ref|ZP_05263482.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937949|ref|ZP_05269646.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386045877|ref|YP_005964209.1| ribonuclease III [Listeria monocytogenes J0161]
gi|47013984|gb|EAL04997.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|258610558|gb|EEW23166.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591478|gb|EFF99812.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345532868|gb|AEO02309.1| ribonuclease III [Listeria monocytogenes J0161]
Length = 136
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD ++E + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVHEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL + +RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGDVDRLQEWMEK 124
>gi|49482760|ref|YP_039984.1| hypothetical protein SAR0534 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257424644|ref|ZP_05601071.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427312|ref|ZP_05603711.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429948|ref|ZP_05606332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432650|ref|ZP_05609010.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257435554|ref|ZP_05611602.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|282903118|ref|ZP_06311009.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
gi|282904908|ref|ZP_06312766.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282907858|ref|ZP_06315693.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910171|ref|ZP_06317975.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282913363|ref|ZP_06321152.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
gi|282918318|ref|ZP_06326055.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus C427]
gi|282923280|ref|ZP_06330960.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus C101]
gi|283957328|ref|ZP_06374781.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500409|ref|ZP_06666260.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509354|ref|ZP_06668065.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus M809]
gi|293523941|ref|ZP_06670628.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
gi|295427068|ref|ZP_06819704.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590579|ref|ZP_06949218.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
gi|384868545|ref|YP_005748741.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|387601885|ref|YP_005733406.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
ST398]
gi|404477917|ref|YP_006709347.1| hypothetical protein C248_0604 [Staphylococcus aureus 08BA02176]
gi|415684086|ref|ZP_11449241.1| hypothetical protein CGSSa00_12712 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417889327|ref|ZP_12533418.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|418310588|ref|ZP_12922124.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|418581206|ref|ZP_13145289.1| hypothetical protein SACIG1605_1100 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418595434|ref|ZP_13159048.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|418601621|ref|ZP_13165041.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|418891134|ref|ZP_13445251.1| hypothetical protein SACIG1176_1213 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418896916|ref|ZP_13450989.1| hypothetical protein SACIGC341D_1110 [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418899880|ref|ZP_13453939.1| hypothetical protein SACIG1214_1128 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418908285|ref|ZP_13462293.1| hypothetical protein SACIG149_1162 [Staphylococcus aureus subsp.
aureus CIG149]
gi|418916340|ref|ZP_13470303.1| hypothetical protein SACIG1267_1057 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418922163|ref|ZP_13476080.1| hypothetical protein SACIG1233_1144 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418981398|ref|ZP_13529113.1| hypothetical protein SACIG1242_0445 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985031|ref|ZP_13532721.1| hypothetical protein SACIG1500_1104 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|49240889|emb|CAG39556.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257272214|gb|EEV04337.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275505|gb|EEV06978.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279145|gb|EEV09746.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257282065|gb|EEV12200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284745|gb|EEV14864.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|282314148|gb|EFB44538.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus C101]
gi|282317452|gb|EFB47824.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus C427]
gi|282322395|gb|EFB52717.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
gi|282325563|gb|EFB55871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282328242|gb|EFB58520.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331733|gb|EFB61244.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282596073|gb|EFC01034.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
gi|283469823|emb|CAQ49034.1| cysteinyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
ST398]
gi|283790779|gb|EFC29594.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920904|gb|EFD97965.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
gi|291095414|gb|EFE25675.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467451|gb|EFF09966.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus M809]
gi|295128856|gb|EFG58486.1| ribonuclease III family protein [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576878|gb|EFH95593.1| cysteine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
gi|312439050|gb|ADQ78121.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|315193894|gb|EFU24288.1| hypothetical protein CGSSa00_12712 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341851737|gb|EGS92648.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21195]
gi|365236292|gb|EHM77188.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21331]
gi|374398040|gb|EHQ69238.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21345]
gi|374401573|gb|EHQ72639.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21342]
gi|377704962|gb|EHT29270.1| hypothetical protein SACIG1214_1128 [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377707218|gb|EHT31511.1| hypothetical protein SACIG1242_0445 [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377708163|gb|EHT32454.1| hypothetical protein SACIG1500_1104 [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377711990|gb|EHT36213.1| hypothetical protein SACIG1605_1100 [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377732091|gb|EHT56142.1| hypothetical protein SACIG1176_1213 [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377735486|gb|EHT59516.1| hypothetical protein SACIG1233_1144 [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377751692|gb|EHT75620.1| hypothetical protein SACIG1267_1057 [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377755624|gb|EHT79522.1| hypothetical protein SACIG149_1162 [Staphylococcus aureus subsp.
aureus CIG149]
gi|377761695|gb|EHT85564.1| hypothetical protein SACIGC341D_1110 [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|404439406|gb|AFR72599.1| hypothetical protein C248_0604 [Staphylococcus aureus 08BA02176]
Length = 134
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
++
Sbjct: 126 EI 127
>gi|418415996|ref|ZP_12989199.1| hypothetical protein HMPREF9308_02364 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|410873854|gb|EKS21788.1| hypothetical protein HMPREF9308_02364 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 134
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L + NR+ V ++Q L+KLL
Sbjct: 8 LLNPLTLAYMGDAVLDQHVRAYIV---LKLRSKPNRLHQAAKRYVSAKSQAQTLEKLLAQ 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+VR G+N S T+ K Y ++S++E + G+LYL RL +++
Sbjct: 65 QWFTEEELDIVRRGRNAKSY-TKAK-NTDIQTYRKSSAIEAVIGFLYLEQREQRLNSLLT 122
Query: 231 KL 232
++
Sbjct: 123 EI 124
>gi|19704899|ref|NP_602394.1| hypothetical protein FN1578 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327723|ref|ZP_06870263.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|81485528|sp|Q8RIL0.1|MRNCL_FUSNN RecName: Full=Mini-ribonuclease 3-like protein
gi|19712792|gb|AAL93693.1| Hypothetical protein FN1578 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296155161|gb|EFG95938.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 129
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K++ND
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|386728288|ref|YP_006194671.1| hypothetical protein ST398NM01_0606 [Staphylococcus aureus subsp.
aureus 71193]
gi|418980359|ref|ZP_13528142.1| Hypothetical protein ST398NM02_0606 [Staphylococcus aureus subsp.
aureus DR10]
gi|379991887|gb|EIA13349.1| Hypothetical protein ST398NM02_0606 [Staphylococcus aureus subsp.
aureus DR10]
gi|384229581|gb|AFH68828.1| Hypothetical protein ST398NM01_0606 [Staphylococcus aureus subsp.
aureus 71193]
Length = 134
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFADEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
++
Sbjct: 126 EI 127
>gi|319937668|ref|ZP_08012071.1| ribonuclease III family protein [Coprobacillus sp. 29_1]
gi|319807103|gb|EFW03717.1| ribonuclease III family protein [Coprobacillus sp. 29_1]
Length = 130
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLF------PPLSIEEYNNRVMAVVRCETQDALLQKL 168
+ N +LAY+GD ++E+Y R + + P L + V + Q A +++
Sbjct: 4 ELINPLALAYLGDGVFEVYVREYLIVDQEITKPDL----LQKAAIQFVSAKAQAAFMKEA 59
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLED 227
+ ++ +E + + G+N + NTR + +N++S E L G+LY L R+++
Sbjct: 60 MLHEWVDEDEIRIYKRGRN--AKNTRVMKNTSVITHNQSSGFEALIGHLYLLKKEKRIQE 117
Query: 228 VMS 230
+
Sbjct: 118 IFE 120
>gi|258422623|ref|ZP_05685529.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417890352|ref|ZP_12534429.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21200]
gi|418282580|ref|ZP_12895345.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|418308151|ref|ZP_12919804.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21194]
gi|418559641|ref|ZP_13124176.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21252]
gi|418888431|ref|ZP_13442568.1| hypothetical protein SACIG1524_1045 [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993245|ref|ZP_13540884.1| hypothetical protein SACIG290_1125 [Staphylococcus aureus subsp.
aureus CIG290]
gi|257847195|gb|EEV71203.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855079|gb|EGS95933.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21200]
gi|365169581|gb|EHM60827.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21202]
gi|365241631|gb|EHM82375.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21194]
gi|371974484|gb|EHO91814.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21252]
gi|377747208|gb|EHT71174.1| hypothetical protein SACIG290_1125 [Staphylococcus aureus subsp.
aureus CIG290]
gi|377754883|gb|EHT78788.1| hypothetical protein SACIG1524_1045 [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 134
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEK 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
++
Sbjct: 126 EI 127
>gi|404416860|ref|ZP_10998673.1| hypothetical protein SARL_03291 [Staphylococcus arlettae CVD059]
gi|403490748|gb|EJY96280.1| hypothetical protein SARL_03291 [Staphylococcus arlettae CVD059]
Length = 132
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V V ++Q L+ L+ +
Sbjct: 8 LLNPLTLAYMGDAVLDQHIRTYIV---LKLQSKPNRLHQVAKQYVSAKSQAQTLEYLIAN 64
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRL 225
++ + EE ++VR G+N A + TK + Y ++S LE + G+LYL T RL
Sbjct: 65 TWFTDEELEIVRRGRN---AKSYTKAKNTDIQTYKKSSGLEAVIGFLYLDTQEERL 117
>gi|225574358|ref|ZP_03782968.1| hypothetical protein RUMHYD_02425 [Blautia hydrogenotrophica DSM
10507]
gi|225038414|gb|EEG48660.1| RNase3 domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAYIGD YE+ R + + + + +V+ TQ A++QKL + L+
Sbjct: 22 YSPLTLAYIGDGAYEIIVRTLLVKQGNCPVNRLHKKASQLVKAGTQSAIIQKL--EPMLT 79
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE + + G+N S + A Y RA+ E L GYLYL
Sbjct: 80 EEEYRIYKRGRNAHSPTM--AKHASMTDYRRATGFEALIGYLYL 121
>gi|379724689|ref|YP_005316820.1| hypothetical protein PM3016_7087 [Paenibacillus mucilaginosus 3016]
gi|378573361|gb|AFC33671.1| hypothetical protein PM3016_7087 [Paenibacillus mucilaginosus 3016]
Length = 153
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 107 PPKVGKPRSVFNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQD 162
PP K + N LAY+GD IYE+Y R++ + P + + R V + Q
Sbjct: 25 PP--AKEPKLLNPLVLAYMGDAIYEMYIRQYVVSQTNHKPNHMHKLCTR---YVSAKAQA 79
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTN 221
L++ + L+ EE D+V+ G+N S + + + A Y +++ E L GYL YL
Sbjct: 80 KALERWM--PLLTEEETDIVKRGRNAKSGS--SAKNADILEYRHSTAFECLVGYLYYLGR 135
Query: 222 ANRLEDVM 229
RL++++
Sbjct: 136 YERLQELL 143
>gi|116493237|ref|YP_804972.1| ribonuclease III family protein [Pediococcus pentosaceus ATCC
25745]
gi|421894082|ref|ZP_16324573.1| putative uncharacterized protein [Pediococcus pentosaceus IE-3]
gi|116103387|gb|ABJ68530.1| Ribonuclease III family protein [Pediococcus pentosaceus ATCC
25745]
gi|385272910|emb|CCG89945.1| putative uncharacterized protein [Pediococcus pentosaceus IE-3]
Length = 137
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLNDSY 173
N +LAY+GD YE++ RRH + L+ NR+ V V + Q AL+ + +++
Sbjct: 11 NGIALAYLGDAEYEVFIRRHLIKQGLT---RPNRLHHVATRYVSAKAQAALINAMEAENF 67
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L+ +E + + G+N S + + Y ++ E + GYL LTN
Sbjct: 68 LTEKEIEAFKKGRNAKSHT--SAKNTSVLTYRISTGFEAIVGYLSLTN 113
>gi|258408942|ref|ZP_05681223.1| ribonuclease III [Staphylococcus aureus A9763]
gi|257840293|gb|EEV64756.1| ribonuclease III [Staphylococcus aureus A9763]
Length = 134
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTCIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|167745716|ref|ZP_02417843.1| hypothetical protein ANACAC_00409 [Anaerostipes caccae DSM 14662]
gi|317472692|ref|ZP_07932007.1| RNase3 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|167655028|gb|EDR99157.1| RNase3 domain protein [Anaerostipes caccae DSM 14662]
gi|316899869|gb|EFV21868.1| RNase3 domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 143
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YE+ R + +S+ +Y+ + ++V+ Q + + L+ EE
Sbjct: 27 GLAYIGDAVYEIAVRTLVISEGNMSVNKYHKKSSSLVKASAQAGVYDNI--KEKLTDEEA 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN--ANRLEDVMSKLGFTNG 237
V + G+N SA + A Y A+ +E L GYLYL+ A LE + K+G G
Sbjct: 85 AVYKRGRNAKSATA--AKNASIVEYRMATGVEALIGYLYLSGRTARALE--LIKIGLDVG 140
>gi|166031082|ref|ZP_02233911.1| hypothetical protein DORFOR_00764 [Dorea formicigenerans ATCC
27755]
gi|346307952|ref|ZP_08850080.1| hypothetical protein HMPREF9457_01789 [Dorea formicigenerans
4_6_53AFAA]
gi|166028929|gb|EDR47686.1| RNase3 domain protein [Dorea formicigenerans ATCC 27755]
gi|345904307|gb|EGX74055.1| hypothetical protein HMPREF9457_01789 [Dorea formicigenerans
4_6_53AFAA]
Length = 154
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQKLLNDSY 173
+LAYIGDCI++L + L + E N +V + V+ Q +++ + +
Sbjct: 31 ALAYIGDCIFDL------VIKSLVMNEGNKQVQKMHKETSSYVQASAQSKMMRTI--QEH 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
L+ EE + + G+N S + + Y RA+ E L GYLYL + RL D++ K+
Sbjct: 83 LTEEEHGIYKRGRNAKSVS--PAKNQSITDYRRATGFEALMGYLYLKKDWKRLLDLV-KI 139
Query: 233 GFTNGSSTQMILEE 246
G + S + EE
Sbjct: 140 GLCSVSDRSALKEE 153
>gi|403388299|ref|ZP_10930356.1| hypothetical protein CJC12_10823 [Clostridium sp. JC122]
Length = 143
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N LA GD +YE++ R + + F +++ + + + ++ V+ ++Q +++++++ L
Sbjct: 18 LNPLVLALAGDAVYEVFIRTYLIEKFRGMNVNKLHKKTVSYVKAKSQCEYMKQIIDE--L 75
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232
+ +E + + G+N + + T + Y A+ E L GYLYL+ RL+ +++K+
Sbjct: 76 NEKEMAIFKRGRN---SKSHTPKNGDVIEYKWATGFEALIGYLYLSGETKRLDYILTKI 131
>gi|191639245|ref|YP_001988411.1| ribonuclease III family protein [Lactobacillus casei BL23]
gi|385820998|ref|YP_005857385.1| hypothetical protein LC2W_2470 [Lactobacillus casei LC2W]
gi|385824181|ref|YP_005860523.1| hypothetical protein LCBD_2487 [Lactobacillus casei BD-II]
gi|190713547|emb|CAQ67553.1| Ribonuclease III family protein [Lactobacillus casei BL23]
gi|327383325|gb|AEA54801.1| hypothetical protein LC2W_2470 [Lactobacillus casei LC2W]
gi|327386508|gb|AEA57982.1| hypothetical protein LCBD_2487 [Lactobacillus casei BD-II]
Length = 142
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAY+GD +YE+Y R H L P S++ V + Q AL+ + +
Sbjct: 8 LNGIALAYMGDAVYEIYIREHLLKRGLVRPASLQR---AAKDFVSAKAQAALIAGMEEAN 64
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L ++E D+ + G+N S + Y ++ E L GYL+L
Sbjct: 65 LLDSDETDIFKHGRNAKSYT--HAKNTDVVTYRVSTGFEALFGYLHLIG 111
>gi|116871623|ref|YP_848404.1| hypothetical protein lwe0203 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740501|emb|CAK19621.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 136
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAMALKVMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL + RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGDMRRLQEWMEK 124
>gi|366053943|ref|ZP_09451665.1| ribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 139
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAY+GD YE+Y R+H + L+ + ++ V + Q AL+ + D LS
Sbjct: 10 NGIALAYLGDAAYEVYIRQHLIQDGLTKPTKLHHIATHYVSAKAQAALVDLMKEDQLLSE 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
E D + G+N AN+ T + Y ++ E L GYL L+ +RL ++
Sbjct: 70 TEWDYFKRGRN---ANSHTHAKNTSVLTYRISTGFEALMGYLKLSGQTDRLSEL 120
>gi|418599319|ref|ZP_13162808.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21343]
gi|374397426|gb|EHQ68636.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus 21343]
Length = 134
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE ++++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMNILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|421276621|ref|ZP_15727442.1| RNase3 domain protein [Streptococcus mitis SPAR10]
gi|395876827|gb|EJG87899.1| RNase3 domain protein [Streptococcus mitis SPAR10]
Length = 128
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEEV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLETLIS 120
>gi|422808356|ref|ZP_16856767.1| ribonuclease III family protein [Listeria monocytogenes FSL J1-208]
gi|378753390|gb|EHY63974.1| ribonuclease III family protein [Listeria monocytogenes FSL J1-208]
Length = 136
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL +RL+ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEMDRLKKWMEK 124
>gi|407474735|ref|YP_006789135.1| ribonuclease III [Clostridium acidurici 9a]
gi|407051243|gb|AFS79288.1| ribonuclease III [Clostridium acidurici 9a]
Length = 148
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YEL R + L +S+ + + V+ + Q +L + + L+ EE
Sbjct: 35 QLAYIGDAVYELLVRTYILSKKNISVHHLHKEAIKYVKAKAQRDILFSI--EENLTEEEW 92
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232
+VV+ G+N S + A Y ++ E L G+LYL +RL+++ + +
Sbjct: 93 NVVKRGRNAKSGT--VPKNADLQDYKYSTGFEALIGFLYLLKRYDRLDEIFNMI 144
>gi|256844497|ref|ZP_05549983.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256613575|gb|EEU18778.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
Length = 147
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YEL RRH + + + R V + Q AL K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYELIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALATKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+E R G+N S +T+ K + Y ++ E + GYL L N R+ D+
Sbjct: 77 DDELAAFRRGRNAKS-HTKAKNTS-LKTYQLSTGFEAMIGYLDLLGKNDRVADL 128
>gi|227529488|ref|ZP_03959537.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
gi|227350573|gb|EEJ40864.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
Length = 137
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L L+ + + V + Q AL+ + D L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLSQGLAKPTKLQHIATHYVSAKAQAALIDLMKQDDILT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
+E + G+N AN+ T + Y ++ E + GYL L +R+E++
Sbjct: 69 EDEWSYFKRGRN---ANSHTHAKHTSVLTYRISTGFEAMMGYLQLAGKQDRIEEL 120
>gi|418631337|ref|ZP_13193801.1| RNase3 domain protein [Staphylococcus epidermidis VCU128]
gi|420178482|ref|ZP_14684813.1| hypothetical protein HMPREF9989_09500 [Staphylococcus epidermidis
NIHLM057]
gi|420179581|ref|ZP_14685869.1| hypothetical protein HMPREF9988_02333 [Staphylococcus epidermidis
NIHLM053]
gi|420193489|ref|ZP_14699341.1| hypothetical protein HMPREF9983_10396 [Staphylococcus epidermidis
NIHLM023]
gi|374835438|gb|EHR99048.1| RNase3 domain protein [Staphylococcus epidermidis VCU128]
gi|394246417|gb|EJD91675.1| hypothetical protein HMPREF9989_09500 [Staphylococcus epidermidis
NIHLM057]
gi|394253570|gb|EJD98575.1| hypothetical protein HMPREF9988_02333 [Staphylococcus epidermidis
NIHLM053]
gi|394259931|gb|EJE04759.1| hypothetical protein HMPREF9983_10396 [Staphylococcus epidermidis
NIHLM023]
Length = 132
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYL 174
+ N +LAY+GD + + + R + + S + ++V + V ++Q L+ LL +
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIVLKLQSKPHHLHQVSKSYVSAKSQAKTLEYLLGIDWF 68
Query: 175 SAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 69 TEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|430853978|ref|ZP_19471700.1| ribonuclease III [Enterococcus faecium E1258]
gi|430539655|gb|ELA79895.1| ribonuclease III [Enterococcus faecium E1258]
Length = 131
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLN 170
+ + N +LAY+GD IYE+Y R H + + +R V Q L+Q++L
Sbjct: 2 RDHTQLNGLALAYVGDAIYEIYVRDHLIDQGETKPNKLHRAATNYVSANAQAFLIQQMLE 61
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV- 228
+ L+ EE R G+N S + + A Y A+ E L GYL+LT R+E++
Sbjct: 62 EHLLTEEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELI 119
Query: 229 ---MSKLGFTNG 237
+ K+G NG
Sbjct: 120 RWCIQKVGEKNG 131
>gi|418577085|ref|ZP_13141215.1| hypothetical protein SSME_22710 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379324447|gb|EHY91595.1| hypothetical protein SSME_22710 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 128
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA----VVRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V + Q L+ L+ +
Sbjct: 5 LLNPLTLAYMGDAVLDQHVRAYIV---LKLKAKPNRLHQEAKRYVSAKGQALTLESLMEN 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
+ S EE D+VR G+N A + TK + Y ++S LE + GYLYL
Sbjct: 62 EWFSEEELDIVRRGRN---AKSYTKAKNTDIQTYRKSSGLEAIIGYLYL 107
>gi|302837456|ref|XP_002950287.1| hypothetical protein VOLCADRAFT_104675 [Volvox carteri f.
nagariensis]
gi|300264292|gb|EFJ48488.1| hypothetical protein VOLCADRAFT_104675 [Volvox carteri f.
nagariensis]
Length = 145
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY-L 174
V LAY+GD ++ L+ R +L PP + Y V Q + L LL + L
Sbjct: 8 VHTPQQLAYLGDAVWSLHVRCKYLSPPKNFAAYRTAAERHVSAARQSSYLDLLLASGWRL 67
Query: 175 SAEERDVVRWG-KNVGSANTRTKRRAGA---AVYNRASSLETLAGYLYLTNANR 224
EE +VRW + + R K A Y +A++ E L G+L L + R
Sbjct: 68 RPEESRLVRWAQREMSDPRFRPKYSAAGGQLGAYRKATAFEALIGHLSLEDQPR 121
>gi|333394600|ref|ZP_08476419.1| hypothetical protein LcorcK3_02187 [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 139
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y RRH L ++ ++ V + Q L++ +L + L+
Sbjct: 10 LNGIALAYMGDASYEVYIRRHLLSKGITKPTRLQHQATHFVSAKAQAGLIEAMLAQNILN 69
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E + G+N AN+ T + Y ++ E L GYL L++ RL+++
Sbjct: 70 EAELSFYKRGRN---ANSHTHAKNTSVTTYRISTGFEALMGYLALSDQQERLDEL 121
>gi|317056984|ref|YP_004105451.1| ribonuclease III [Ruminococcus albus 7]
gi|315449253|gb|ADU22817.1| ribonuclease III [Ruminococcus albus 7]
Length = 141
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVR-C-ETQDALLQKLLNDSYLSAEE 178
SLA++GD +YE R L + + +AV R C E Q + L++ L+ E
Sbjct: 17 SLAFLGDAVYEQLVRTKILLAA-DMPSHKLHKLAVSRVCAEYQSECMLLLIDKDILTERE 75
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGS 238
V R G+N + + A Y A+ LE L GYLYLT DV+ L + +G
Sbjct: 76 LSVYRRGRNT---KVNAPKHSTIAEYRNATGLECLFGYLYLTAQQERIDVLFSLCWEHGE 132
>gi|421769977|ref|ZP_16206681.1| Ribonuclease III family protein [Lactobacillus rhamnosus LRHMDP2]
gi|421773653|ref|ZP_16210293.1| Ribonuclease III family protein [Lactobacillus rhamnosus LRHMDP3]
gi|411181557|gb|EKS48726.1| Ribonuclease III family protein [Lactobacillus rhamnosus LRHMDP3]
gi|411183337|gb|EKS50476.1| Ribonuclease III family protein [Lactobacillus rhamnosus LRHMDP2]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R H L L R V + Q AL+ + LS
Sbjct: 8 LNGIALAYLGDAVYEVYIREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGMQTADLLS 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
A E +V + G+N S + Y ++ E L GYL+L
Sbjct: 68 AVETEVFKHGRNAKSYT--HAKHTDVVTYRISTGFEALFGYLHL 109
>gi|420146260|ref|ZP_14653689.1| Ribonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398402039|gb|EJN55435.1| Ribonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y RRH L ++ ++ V + Q L++ +L + L+
Sbjct: 15 LNGIALAYMGDASYEVYIRRHLLSKGITKPTRLQHQATHFVSAKAQAGLIEAMLAQNILN 74
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E + G+N AN+ T + Y ++ E L GYL L++ RL+++
Sbjct: 75 EAELSFYKRGRN---ANSHTHAKNTSVTTYRISTGFEALMGYLALSDQQERLDEL 126
>gi|385260640|ref|ZP_10038783.1| ribonuclease III domain protein [Streptococcus sp. SK140]
gi|385190883|gb|EIF38311.1| ribonuclease III domain protein [Streptococcus sp. SK140]
Length = 128
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQAHLISLMLEEEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLED++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLEDLIS 120
>gi|410461722|ref|ZP_11315368.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409925489|gb|EKN62700.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 136
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E + R + L + + + V + Q +++ L+ ++ L+
Sbjct: 13 LNSLALAYMGDAVFESFIRFNLLASGGVRPNQLHRESTKYVSAKAQAIMVRSLIEENLLT 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKLGF 234
EE VV+ G+N SA + Y +++ E L GY YL+ N RL ++M + GF
Sbjct: 73 EEEVAVVKRGRNAKSAT--VPKNTDVQTYRYSTAFEALLGYHYLSGNEERLNELM-EFGF 129
>gi|332685572|ref|YP_004455346.1| ribonuclease III family protein [Melissococcus plutonius ATCC
35311]
gi|379726651|ref|YP_005318836.1| ribonuclease III family protein [Melissococcus plutonius DAT561]
gi|332369581|dbj|BAK20537.1| ribonuclease III family protein [Melissococcus plutonius ATCC
35311]
gi|376317554|dbj|BAL61341.1| ribonuclease III family protein [Melissococcus plutonius DAT561]
Length = 132
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLN 170
K + +LAYIGD IYE+Y R + + + +R+ V + Q L+ ++L+
Sbjct: 2 KDYTQLGGLTLAYIGDAIYEVYIRDYLIKEGKTKPNTLHRLATHYVSAKAQAFLILEMLD 61
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L+ EE + G+N S + A Y A+ E L GYL+LTN
Sbjct: 62 AKLLTEEEIQFYKRGRNAKSHT--FAKNADVTTYRIATGFEALMGYLHLTN 110
>gi|227513729|ref|ZP_03943778.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083048|gb|EEI18360.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 136
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
S N +LAY+GD YE++ RRH + ++ + + V + Q AL+ + D
Sbjct: 6 SQLNGIALAYMGDAAYEVFIRRHLIEDGIAKPTKLQHAATNYVSAKAQAALIDLMTKDKL 65
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+ +E D + G+N S +T K Y ++ E + GYL L++ N
Sbjct: 66 LTDDEWDYFKRGRNAKS-HTHAK-NTDVITYRISTGFEAVFGYLCLSDQN 113
>gi|302671186|ref|YP_003831146.1| ribonuclease III [Butyrivibrio proteoclasticus B316]
gi|302395659|gb|ADL34564.1| ribonuclease III family protein [Butyrivibrio proteoclasticus B316]
Length = 145
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +++ R + ++ + R +VV+ TQ A+++ L+ D L+ EE+
Sbjct: 27 TLAYIGDAFFDMIIRSILVNKGNTAVNNLHKRASSVVKAPTQAAMVKALMED--LTEEEQ 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
D R G+N +T+ K A Y A+ E + G+LYLT
Sbjct: 85 DYYRRGRN-SKPHTKAK-NATTMDYLDATGFEAVMGFLYLTGG 125
>gi|227879318|ref|ZP_03997184.1| ribonuclease III [Lactobacillus crispatus JV-V01]
gi|256849115|ref|ZP_05554548.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047596|ref|ZP_06020551.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
gi|227861087|gb|EEJ68740.1| ribonuclease III [Lactobacillus crispatus JV-V01]
gi|256713891|gb|EEU28879.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572172|gb|EEX28737.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
Length = 147
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q AL+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAALVTKMQDEEMLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
+E R G+N A + TK + Y ++ E + GYL L N R+ D+
Sbjct: 77 DDELAAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLGKNDRVADL 128
>gi|331701829|ref|YP_004398788.1| ribonuclease III [Lactobacillus buchneri NRRL B-30929]
gi|406027304|ref|YP_006726136.1| ribonuclease III [Lactobacillus buchneri CD034]
gi|329129172|gb|AEB73725.1| ribonuclease III [Lactobacillus buchneri NRRL B-30929]
gi|405125793|gb|AFS00554.1| ribonuclease III [Lactobacillus buchneri CD034]
Length = 136
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSY 173
S N +LAY+GD YE++ RRH + L+ + V V + Q AL+ + D
Sbjct: 6 SQLNGIALAYMGDAAYEVFIRRHLIAQGLTKPKRLQHVATNYVSAKAQAALIDLMKTDGL 65
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
L+ E D + G+N AN+ T + Y ++ E + GYL L++ +R++++
Sbjct: 66 LNETEWDYFKRGRN---ANSHTHAKNTDVITYRISTGFEAVFGYLSLSDQTDRMKEI 119
>gi|116495759|ref|YP_807493.1| ribonuclease III family protein [Lactobacillus casei ATCC 334]
gi|227533679|ref|ZP_03963728.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239630170|ref|ZP_04673201.1| ribonuclease III family protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067315|ref|YP_003789338.1| ribonuclease III family protein [Lactobacillus casei str. Zhang]
gi|417981526|ref|ZP_12622191.1| ribonuclease III family protein [Lactobacillus casei 12A]
gi|417984345|ref|ZP_12624968.1| ribonuclease III family protein [Lactobacillus casei 21/1]
gi|417987610|ref|ZP_12628165.1| ribonuclease III family protein [Lactobacillus casei 32G]
gi|417990632|ref|ZP_12631102.1| ribonuclease III family protein [Lactobacillus casei A2-362]
gi|417993945|ref|ZP_12634281.1| ribonuclease III family protein [Lactobacillus casei CRF28]
gi|417997101|ref|ZP_12637368.1| ribonuclease III family protein [Lactobacillus casei M36]
gi|417999941|ref|ZP_12640145.1| ribonuclease III family protein [Lactobacillus casei T71499]
gi|418003100|ref|ZP_12643201.1| ribonuclease III family protein [Lactobacillus casei UCD174]
gi|418006033|ref|ZP_12646002.1| ribonuclease III family protein [Lactobacillus casei UW1]
gi|418008849|ref|ZP_12648699.1| ribonuclease III family protein [Lactobacillus casei UW4]
gi|418010687|ref|ZP_12650458.1| ribonuclease III family protein [Lactobacillus casei Lc-10]
gi|418013997|ref|ZP_12653616.1| ribonuclease III family protein [Lactobacillus casei Lpc-37]
gi|116105909|gb|ABJ71051.1| Ribonuclease III family protein [Lactobacillus casei ATCC 334]
gi|227188663|gb|EEI68730.1| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239527782|gb|EEQ66783.1| ribonuclease III family protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439722|gb|ADK19488.1| Ribonuclease III family protein [Lactobacillus casei str. Zhang]
gi|410521665|gb|EKP96623.1| ribonuclease III family protein [Lactobacillus casei 12A]
gi|410522930|gb|EKP97868.1| ribonuclease III family protein [Lactobacillus casei 32G]
gi|410525711|gb|EKQ00609.1| ribonuclease III family protein [Lactobacillus casei 21/1]
gi|410530854|gb|EKQ05617.1| ribonuclease III family protein [Lactobacillus casei CRF28]
gi|410533807|gb|EKQ08473.1| ribonuclease III family protein [Lactobacillus casei M36]
gi|410534336|gb|EKQ08990.1| ribonuclease III family protein [Lactobacillus casei A2-362]
gi|410538176|gb|EKQ12733.1| ribonuclease III family protein [Lactobacillus casei T71499]
gi|410542930|gb|EKQ17331.1| ribonuclease III family protein [Lactobacillus casei UCD174]
gi|410545053|gb|EKQ19361.1| ribonuclease III family protein [Lactobacillus casei UW1]
gi|410545574|gb|EKQ19865.1| ribonuclease III family protein [Lactobacillus casei UW4]
gi|410553266|gb|EKQ27269.1| ribonuclease III family protein [Lactobacillus casei Lc-10]
gi|410555088|gb|EKQ29051.1| ribonuclease III family protein [Lactobacillus casei Lpc-37]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAY+GD +YE+Y R H L P S++ V + Q AL+ + +
Sbjct: 8 LNGIALAYMGDAVYEVYIREHLLKRGLVRPASLQR---AAKDFVSAKAQAALIAGMEEAN 64
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
L ++E D+ + G+N S + Y ++ E L GYL+L
Sbjct: 65 LLDSDETDIFKHGRNAKSYT--HAKNTDVVTYRVSTGFEALFGYLHLIG 111
>gi|433448946|ref|ZP_20411811.1| ribonuclease III [Weissella ceti NC36]
gi|429539335|gb|ELA07372.1| ribonuclease III [Weissella ceti NC36]
Length = 141
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIE---EYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
LA+ GD +YE Y R+H L L I+ + V + AL + + DS L+ E
Sbjct: 16 LAFFGDAVYEFYVRQHLL--ALGIKKPHKLQREAKQYVSAKAHAALYRLMEEDSLLTDAE 73
Query: 179 RDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
+ G+N AN+ TK + Y ++ E L GYLY + RL++V++
Sbjct: 74 ESYFKRGRN---ANSHTKAKNTDVVTYRISTGFEALIGYLYASRQIERLDEVVT 124
>gi|69245492|ref|ZP_00603456.1| Ribonuclease III [Enterococcus faecium DO]
gi|257879804|ref|ZP_05659457.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257882530|ref|ZP_05662183.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257886071|ref|ZP_05665724.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257891645|ref|ZP_05671298.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257894122|ref|ZP_05673775.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257899916|ref|ZP_05679569.1| ribonuclease III [Enterococcus faecium Com15]
gi|260559478|ref|ZP_05831659.1| ribonuclease III [Enterococcus faecium C68]
gi|261206629|ref|ZP_05921327.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289564990|ref|ZP_06445444.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|68195743|gb|EAN10180.1| Ribonuclease III [Enterococcus faecium DO]
gi|257814032|gb|EEV42790.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257818188|gb|EEV45516.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821927|gb|EEV49057.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257828005|gb|EEV54631.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257830501|gb|EEV57108.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257837828|gb|EEV62902.1| ribonuclease III [Enterococcus faecium Com15]
gi|260074577|gb|EEW62898.1| ribonuclease III [Enterococcus faecium C68]
gi|260079122|gb|EEW66815.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289163197|gb|EFD11043.1| ribonuclease III [Enterococcus faecium D344SRF]
Length = 136
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + +R V Q L+Q++L + L+
Sbjct: 12 LNGLALAYVGDAIYEIYVRDHLIDQGETKPNKLHRAATNYVSANAQAFLIQQMLEEHLLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE R G+N S + + A Y A+ E L GYL+LT R+E++ +
Sbjct: 72 EEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELIRWCIQ 129
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 130 KVGEKNG 136
>gi|309808409|ref|ZP_07702308.1| RNase3 domain protein [Lactobacillus iners LactinV 01V1-a]
gi|312873910|ref|ZP_07733948.1| RNase3 domain protein [Lactobacillus iners LEAF 2052A-d]
gi|308168237|gb|EFO70356.1| RNase3 domain protein [Lactobacillus iners LactinV 01V1-a]
gi|311090586|gb|EFQ48992.1| RNase3 domain protein [Lactobacillus iners LEAF 2052A-d]
Length = 147
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE R+H + P ++ Y V + Q L+ K+ + + L+A
Sbjct: 21 ALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATH---YVSAKAQAGLITKMKDLNKLTA 77
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE + + G+N AN+ T + + Y ++ E + GYLYL+ +RL+++++
Sbjct: 78 EEIAIFKRGRN---ANSYTHAKNTSISTYKLSTGFEAMIGYLYLSKQYDRLDNLIA 130
>gi|379795002|ref|YP_005325000.1| hypothetical protein SAMSHR1132_04750 [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356871992|emb|CCE58331.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 134
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRNYIVMKLKSKPNKLHQMSKK---YVSAKSQAQTLELLIEH 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE +++ G+N S +T+ K Y ++S+LE + G+LYL RLE +++
Sbjct: 68 KWFTEEEMAILKRGRNAKS-HTKAK-NTDVQTYRKSSALEAVIGFLYLDKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>gi|401679963|ref|ZP_10811887.1| ribonuclease III domain protein [Veillonella sp. ACP1]
gi|400219090|gb|EJO49961.1| ribonuclease III domain protein [Veillonella sp. ACP1]
Length = 161
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 110 VGKPRSVF---NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALL 165
V KP S +A LAYIGD +Y +Y R+ + +S ++ + V+ + ++Q +L
Sbjct: 28 VSKPASEVLASDAVMLAYIGDAVYSMYIRQRVVEMSISKVQVLHTLVIEFICAKSQSKVL 87
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANR 224
+L +S L+ +E+ + R +N +N + + Y +++ E + G+LY T +R
Sbjct: 88 DQL--ESMLTEDEQTIARRARN---SNVNVPKSSSVREYRNSTAFEAVLGFLYETGQQDR 142
Query: 225 LEDVMSK 231
L ++M +
Sbjct: 143 LNELMKE 149
>gi|430851285|ref|ZP_19469035.1| ribonuclease III [Enterococcus faecium E1185]
gi|430534247|gb|ELA74708.1| ribonuclease III [Enterococcus faecium E1185]
Length = 131
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + +R V Q L+Q++L + L+
Sbjct: 7 LNGLALAYVGDAIYEIYVRDHLIDQGETKPNKLHRAATNYVSANAQAFLIQRMLEEHLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE R G+N S + + A Y A+ E L GYL+LT R+E++ +
Sbjct: 67 EEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELIRWCIQ 124
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 125 KVGEKNG 131
>gi|257888688|ref|ZP_05668341.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257897354|ref|ZP_05677007.1| ribonuclease III [Enterococcus faecium Com12]
gi|257824742|gb|EEV51674.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257833919|gb|EEV60340.1| ribonuclease III [Enterococcus faecium Com12]
Length = 136
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + +R V Q L+Q++L + L+
Sbjct: 12 LNGLALAYVGDAIYEIYVRDHLINQGETKPNKLHRAATNYVSANAQAFLIQQMLEEHLLT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE R G+N S + + A Y A+ E L GYL+LT R+E++ +
Sbjct: 72 EEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELIRWCIQ 129
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 130 KVGEKNG 136
>gi|163816510|ref|ZP_02207874.1| hypothetical protein COPEUT_02699 [Coprococcus eutactus ATCC 27759]
gi|158448210|gb|EDP25205.1| RNase3 domain protein [Coprococcus eutactus ATCC 27759]
Length = 167
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEE-------YNNRVMAVVRCETQDALL 165
PR ++ SLAYIGD +++L L L++ + Y+ V V+ E Q +
Sbjct: 20 PRE-YSPLSLAYIGDSVFDL------LIKTLAVTKDNKQAYKYHKEVSQKVKAEAQAGYI 72
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
LL++ L+ +E + + G+N + +T + A Y A+ E L GYLYL
Sbjct: 73 IYLLDNGLLTDDEEWIYKRGRNTKTHST--AKNATVGQYRMATGFECLIGYLYL 124
>gi|304315920|ref|YP_003851065.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|433654078|ref|YP_007297786.1| hypothetical protein Thethe_00361 [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|302777422|gb|ADL67981.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|433292267|gb|AGB18089.1| hypothetical protein Thethe_00361 [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 137
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+A+IGD +Y+L+ R H I + + + V+ +Q +L+KL + EE+D
Sbjct: 25 MAFIGDSVYDLFIRTHIAVKGNRPINKIHKECVQYVKASSQSEILKKLYD--IFDEEEKD 82
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLET 212
++R G+NV SA + AG Y A++ E
Sbjct: 83 IIRRGRNVKSAT--IPKHAGIEEYRLATAFEA 112
>gi|227522454|ref|ZP_03952503.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227090406|gb|EEI25718.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 136
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
S N +LAY+GD YE++ RRH + ++ + + V + Q AL+ + D
Sbjct: 6 SQLNGIALAYMGDAAYEVFIRRHLIEDGIAKPTKLQHAATNYVSAKAQAALIDLMTKDKL 65
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+ +E D + G+N S +T K Y ++ E + GYL L++ N
Sbjct: 66 LTDDEWDYFKRGRNAKS-HTHAK-NTDVITYRISTGFEAVFGYLCLSDQN 113
>gi|300857266|ref|YP_003782250.1| hypothetical protein CLJU_c41260 [Clostridium ljungdahlii DSM
13528]
gi|300437381|gb|ADK17148.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 141
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYLSAEE 178
+LA+IGD +YE++ R + ++ +N V A+ V+ +Q +++KL + LS E
Sbjct: 22 ALAFIGDAVYEVFVRTYLASEHRNMSVHNLHVEAIKFVKAHSQSEVIKKL--EQELSDRE 79
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRL 225
+ G+N S + A Y A+ ETL G+LYL N +RL
Sbjct: 80 MYFFKKGRNAKSGT--VPKNADVQEYRFATGFETLIGFLYLIGNRDRL 125
>gi|322388261|ref|ZP_08061865.1| ribonuclease III [Streptococcus infantis ATCC 700779]
gi|335029157|ref|ZP_08522669.1| RNase3 domain protein [Streptococcus infantis SK1076]
gi|419844273|ref|ZP_14367569.1| ribonuclease III domain protein [Streptococcus infantis ATCC
700779]
gi|321140933|gb|EFX36434.1| ribonuclease III [Streptococcus infantis ATCC 700779]
gi|334269558|gb|EGL87975.1| RNase3 domain protein [Streptococcus infantis SK1076]
gi|385701988|gb|EIG39142.1| ribonuclease III domain protein [Streptococcus infantis ATCC
700779]
Length = 128
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSARAQARLISLMLEEEV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLETLIS 120
>gi|293553640|ref|ZP_06674264.1| Ribonuclease III [Enterococcus faecium E1039]
gi|293564125|ref|ZP_06678531.1| ribonuclease III family protein [Enterococcus faecium E1162]
gi|293570061|ref|ZP_06681141.1| ribonuclease III family protein [Enterococcus faecium E1071]
gi|293572687|ref|ZP_06683655.1| ribonuclease III family protein [Enterococcus faecium E980]
gi|294614953|ref|ZP_06694844.1| ribonuclease III family protein [Enterococcus faecium E1636]
gi|294618279|ref|ZP_06697861.1| ribonuclease III family protein [Enterococcus faecium E1679]
gi|294623061|ref|ZP_06701948.1| ribonuclease III family protein [Enterococcus faecium U0317]
gi|314940062|ref|ZP_07847245.1| RNase3 domain protein [Enterococcus faecium TX0133a04]
gi|314942531|ref|ZP_07849370.1| RNase3 domain protein [Enterococcus faecium TX0133C]
gi|314949363|ref|ZP_07852704.1| RNase3 domain protein [Enterococcus faecium TX0082]
gi|314952823|ref|ZP_07855795.1| RNase3 domain protein [Enterococcus faecium TX0133A]
gi|314993744|ref|ZP_07859089.1| RNase3 domain protein [Enterococcus faecium TX0133B]
gi|314994809|ref|ZP_07859941.1| RNase3 domain protein [Enterococcus faecium TX0133a01]
gi|383329968|ref|YP_005355852.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|389869784|ref|YP_006377207.1| ribonuclease III [Enterococcus faecium DO]
gi|406579439|ref|ZP_11054670.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406581852|ref|ZP_11056987.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585277|ref|ZP_11060270.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|406589841|ref|ZP_11064260.1| ribonuclease III [Enterococcus sp. GMD1E]
gi|410937680|ref|ZP_11369539.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415892476|ref|ZP_11549941.1| ribonuclease III family protein [Enterococcus faecium E4453]
gi|416132950|ref|ZP_11597976.1| ribonuclease III family protein [Enterococcus faecium E4452]
gi|424791470|ref|ZP_18217882.1| RNase3 domain protein [Enterococcus faecium V689]
gi|424797319|ref|ZP_18222917.1| RNase3 domain protein [Enterococcus faecium S447]
gi|424849969|ref|ZP_18274396.1| RNase3 domain protein [Enterococcus faecium R501]
gi|424858128|ref|ZP_18282174.1| RNase3 domain protein [Enterococcus faecium R499]
gi|424866107|ref|ZP_18289957.1| RNase3 domain protein [Enterococcus faecium R497]
gi|424952063|ref|ZP_18367101.1| RNase3 domain protein [Enterococcus faecium R496]
gi|424952353|ref|ZP_18367379.1| RNase3 domain protein [Enterococcus faecium R494]
gi|424955591|ref|ZP_18370419.1| RNase3 domain protein [Enterococcus faecium R446]
gi|424961721|ref|ZP_18376140.1| RNase3 domain protein [Enterococcus faecium P1986]
gi|424964574|ref|ZP_18378652.1| RNase3 domain protein [Enterococcus faecium P1190]
gi|424967537|ref|ZP_18381230.1| RNase3 domain protein [Enterococcus faecium P1140]
gi|424972651|ref|ZP_18385975.1| RNase3 domain protein [Enterococcus faecium P1139]
gi|424975557|ref|ZP_18388709.1| RNase3 domain protein [Enterococcus faecium P1137]
gi|424979371|ref|ZP_18392228.1| RNase3 domain protein [Enterococcus faecium P1123]
gi|424982259|ref|ZP_18394935.1| RNase3 domain protein [Enterococcus faecium ERV99]
gi|424985929|ref|ZP_18398386.1| RNase3 domain protein [Enterococcus faecium ERV69]
gi|424989176|ref|ZP_18401459.1| RNase3 domain protein [Enterococcus faecium ERV38]
gi|424992491|ref|ZP_18404548.1| RNase3 domain protein [Enterococcus faecium ERV26]
gi|424995206|ref|ZP_18407103.1| RNase3 domain protein [Enterococcus faecium ERV168]
gi|424998066|ref|ZP_18409782.1| RNase3 domain protein [Enterococcus faecium ERV165]
gi|425000475|ref|ZP_18412038.1| RNase3 domain protein [Enterococcus faecium ERV161]
gi|425004933|ref|ZP_18416216.1| RNase3 domain protein [Enterococcus faecium ERV102]
gi|425008231|ref|ZP_18419324.1| RNase3 domain protein [Enterococcus faecium ERV1]
gi|425011252|ref|ZP_18422161.1| RNase3 domain protein [Enterococcus faecium E422]
gi|425015206|ref|ZP_18425842.1| RNase3 domain protein [Enterococcus faecium E417]
gi|425017729|ref|ZP_18428225.1| RNase3 domain protein [Enterococcus faecium C621]
gi|425022072|ref|ZP_18432282.1| RNase3 domain protein [Enterococcus faecium C497]
gi|425026403|ref|ZP_18434868.1| RNase3 domain protein [Enterococcus faecium C1904]
gi|425033071|ref|ZP_18438074.1| RNase3 domain protein [Enterococcus faecium 515]
gi|425035950|ref|ZP_18440753.1| RNase3 domain protein [Enterococcus faecium 514]
gi|425039276|ref|ZP_18443830.1| RNase3 domain protein [Enterococcus faecium 513]
gi|425042931|ref|ZP_18447207.1| RNase3 domain protein [Enterococcus faecium 511]
gi|425046855|ref|ZP_18450843.1| RNase3 domain protein [Enterococcus faecium 510]
gi|425049950|ref|ZP_18453730.1| RNase3 domain protein [Enterococcus faecium 509]
gi|425053598|ref|ZP_18457132.1| RNase3 domain protein [Enterococcus faecium 506]
gi|425055091|ref|ZP_18458582.1| RNase3 domain protein [Enterococcus faecium 505]
gi|425059229|ref|ZP_18462579.1| RNase3 domain protein [Enterococcus faecium 504]
gi|425061179|ref|ZP_18464439.1| RNase3 domain protein [Enterococcus faecium 503]
gi|427397716|ref|ZP_18890198.1| hypothetical protein HMPREF9307_02374 [Enterococcus durans
FB129-CNAB-4]
gi|430821436|ref|ZP_19440045.1| ribonuclease III [Enterococcus faecium E0045]
gi|430824280|ref|ZP_19442844.1| ribonuclease III [Enterococcus faecium E0120]
gi|430827145|ref|ZP_19445309.1| ribonuclease III [Enterococcus faecium E0164]
gi|430829959|ref|ZP_19448028.1| ribonuclease III [Enterococcus faecium E0269]
gi|430832520|ref|ZP_19450563.1| ribonuclease III [Enterococcus faecium E0333]
gi|430835027|ref|ZP_19453026.1| ribonuclease III [Enterococcus faecium E0679]
gi|430837209|ref|ZP_19455184.1| ribonuclease III [Enterococcus faecium E0680]
gi|430839996|ref|ZP_19457931.1| ribonuclease III [Enterococcus faecium E0688]
gi|430842653|ref|ZP_19460565.1| ribonuclease III [Enterococcus faecium E1007]
gi|430845315|ref|ZP_19463209.1| ribonuclease III [Enterococcus faecium E1050]
gi|430847107|ref|ZP_19464954.1| ribonuclease III [Enterococcus faecium E1133]
gi|430856318|ref|ZP_19474015.1| ribonuclease III [Enterococcus faecium E1392]
gi|430859158|ref|ZP_19476774.1| ribonuclease III [Enterococcus faecium E1552]
gi|430861075|ref|ZP_19478667.1| ribonuclease III [Enterococcus faecium E1573]
gi|430867686|ref|ZP_19482584.1| ribonuclease III [Enterococcus faecium E1574]
gi|430906544|ref|ZP_19484979.1| ribonuclease III [Enterococcus faecium E1575]
gi|430964208|ref|ZP_19487656.1| ribonuclease III [Enterococcus faecium E1576]
gi|431014763|ref|ZP_19490305.1| ribonuclease III [Enterococcus faecium E1578]
gi|431083384|ref|ZP_19495955.1| ribonuclease III [Enterococcus faecium E1604]
gi|431116624|ref|ZP_19497890.1| ribonuclease III [Enterococcus faecium E1613]
gi|431215121|ref|ZP_19501168.1| ribonuclease III [Enterococcus faecium E1620]
gi|431239374|ref|ZP_19503677.1| ribonuclease III [Enterococcus faecium E1622]
gi|431265395|ref|ZP_19506097.1| ribonuclease III [Enterococcus faecium E1623]
gi|431312168|ref|ZP_19508818.1| ribonuclease III [Enterococcus faecium E1626]
gi|431387214|ref|ZP_19511577.1| ribonuclease III [Enterococcus faecium E1627]
gi|431449077|ref|ZP_19513918.1| ribonuclease III [Enterococcus faecium E1630]
gi|431510865|ref|ZP_19515881.1| ribonuclease III [Enterococcus faecium E1634]
gi|431561028|ref|ZP_19519660.1| ribonuclease III [Enterococcus faecium E1731]
gi|431600969|ref|ZP_19522454.1| ribonuclease III [Enterococcus faecium E1861]
gi|431668747|ref|ZP_19524109.1| ribonuclease III [Enterococcus faecium E1904]
gi|431739230|ref|ZP_19528168.1| ribonuclease III [Enterococcus faecium E1972]
gi|431742307|ref|ZP_19531201.1| ribonuclease III [Enterococcus faecium E2039]
gi|431744785|ref|ZP_19533651.1| ribonuclease III [Enterococcus faecium E2071]
gi|431747405|ref|ZP_19536199.1| ribonuclease III [Enterococcus faecium E2134]
gi|431749904|ref|ZP_19538634.1| ribonuclease III [Enterococcus faecium E2297]
gi|431756153|ref|ZP_19544791.1| ribonuclease III [Enterococcus faecium E2883]
gi|431761069|ref|ZP_19549656.1| ribonuclease III [Enterococcus faecium E3346]
gi|431766128|ref|ZP_19554624.1| ribonuclease III [Enterococcus faecium E4215]
gi|431768584|ref|ZP_19557019.1| ribonuclease III [Enterococcus faecium E1321]
gi|431771778|ref|ZP_19560155.1| ribonuclease III [Enterococcus faecium E1644]
gi|431774709|ref|ZP_19563014.1| ribonuclease III [Enterococcus faecium E2369]
gi|431777705|ref|ZP_19565956.1| ribonuclease III [Enterococcus faecium E2560]
gi|431780401|ref|ZP_19568580.1| ribonuclease III [Enterococcus faecium E4389]
gi|431783197|ref|ZP_19571319.1| ribonuclease III [Enterococcus faecium E6012]
gi|431784153|ref|ZP_19572198.1| ribonuclease III [Enterococcus faecium E6045]
gi|447913857|ref|YP_007395269.1| Ribonuclease III family protein [Enterococcus faecium NRRL B-2354]
gi|291587433|gb|EFF19317.1| ribonuclease III family protein [Enterococcus faecium E1071]
gi|291592239|gb|EFF23857.1| ribonuclease III family protein [Enterococcus faecium E1636]
gi|291595495|gb|EFF26806.1| ribonuclease III family protein [Enterococcus faecium E1679]
gi|291597534|gb|EFF28698.1| ribonuclease III family protein [Enterococcus faecium U0317]
gi|291602215|gb|EFF32443.1| Ribonuclease III [Enterococcus faecium E1039]
gi|291604043|gb|EFF33571.1| ribonuclease III family protein [Enterococcus faecium E1162]
gi|291607273|gb|EFF36627.1| ribonuclease III family protein [Enterococcus faecium E980]
gi|313590993|gb|EFR69838.1| RNase3 domain protein [Enterococcus faecium TX0133a01]
gi|313591844|gb|EFR70689.1| RNase3 domain protein [Enterococcus faecium TX0133B]
gi|313595057|gb|EFR73902.1| RNase3 domain protein [Enterococcus faecium TX0133A]
gi|313598752|gb|EFR77597.1| RNase3 domain protein [Enterococcus faecium TX0133C]
gi|313640662|gb|EFS05242.1| RNase3 domain protein [Enterococcus faecium TX0133a04]
gi|313644194|gb|EFS08774.1| RNase3 domain protein [Enterococcus faecium TX0082]
gi|364093175|gb|EHM35474.1| ribonuclease III family protein [Enterococcus faecium E4452]
gi|364093305|gb|EHM35587.1| ribonuclease III family protein [Enterococcus faecium E4453]
gi|378939662|gb|AFC64734.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|388535033|gb|AFK60225.1| ribonuclease III [Enterococcus faecium DO]
gi|402916319|gb|EJX37201.1| RNase3 domain protein [Enterococcus faecium R501]
gi|402919235|gb|EJX39853.1| RNase3 domain protein [Enterococcus faecium V689]
gi|402921283|gb|EJX41739.1| RNase3 domain protein [Enterococcus faecium S447]
gi|402927199|gb|EJX47179.1| RNase3 domain protein [Enterococcus faecium R499]
gi|402927779|gb|EJX47709.1| RNase3 domain protein [Enterococcus faecium R496]
gi|402939068|gb|EJX58022.1| RNase3 domain protein [Enterococcus faecium R497]
gi|402941467|gb|EJX60193.1| RNase3 domain protein [Enterococcus faecium R494]
gi|402942623|gb|EJX61192.1| RNase3 domain protein [Enterococcus faecium P1986]
gi|402946288|gb|EJX64571.1| RNase3 domain protein [Enterococcus faecium P1190]
gi|402948327|gb|EJX66475.1| RNase3 domain protein [Enterococcus faecium R446]
gi|402953210|gb|EJX70944.1| RNase3 domain protein [Enterococcus faecium P1137]
gi|402953281|gb|EJX71014.1| RNase3 domain protein [Enterococcus faecium P1139]
gi|402954166|gb|EJX71810.1| RNase3 domain protein [Enterococcus faecium P1140]
gi|402958393|gb|EJX75707.1| RNase3 domain protein [Enterococcus faecium P1123]
gi|402961500|gb|EJX78527.1| RNase3 domain protein [Enterococcus faecium ERV99]
gi|402964890|gb|EJX81641.1| RNase3 domain protein [Enterococcus faecium ERV69]
gi|402969688|gb|EJX86081.1| RNase3 domain protein [Enterococcus faecium ERV38]
gi|402973137|gb|EJX89283.1| RNase3 domain protein [Enterococcus faecium ERV26]
gi|402977976|gb|EJX93744.1| RNase3 domain protein [Enterococcus faecium ERV168]
gi|402984311|gb|EJX99629.1| RNase3 domain protein [Enterococcus faecium ERV165]
gi|402988121|gb|EJY03143.1| RNase3 domain protein [Enterococcus faecium ERV102]
gi|402989111|gb|EJY04064.1| RNase3 domain protein [Enterococcus faecium ERV161]
gi|402993070|gb|EJY07716.1| RNase3 domain protein [Enterococcus faecium ERV1]
gi|402996424|gb|EJY10807.1| RNase3 domain protein [Enterococcus faecium E417]
gi|402997571|gb|EJY11888.1| RNase3 domain protein [Enterococcus faecium E422]
gi|403003791|gb|EJY17647.1| RNase3 domain protein [Enterococcus faecium C621]
gi|403004397|gb|EJY18211.1| RNase3 domain protein [Enterococcus faecium C497]
gi|403005628|gb|EJY19319.1| RNase3 domain protein [Enterococcus faecium C1904]
gi|403011399|gb|EJY24711.1| RNase3 domain protein [Enterococcus faecium 515]
gi|403016381|gb|EJY29203.1| RNase3 domain protein [Enterococcus faecium 514]
gi|403016685|gb|EJY29489.1| RNase3 domain protein [Enterococcus faecium 513]
gi|403021731|gb|EJY34161.1| RNase3 domain protein [Enterococcus faecium 511]
gi|403023080|gb|EJY35370.1| RNase3 domain protein [Enterococcus faecium 510]
gi|403025022|gb|EJY37133.1| RNase3 domain protein [Enterococcus faecium 509]
gi|403029551|gb|EJY41301.1| RNase3 domain protein [Enterococcus faecium 506]
gi|403034588|gb|EJY46025.1| RNase3 domain protein [Enterococcus faecium 505]
gi|403036162|gb|EJY47525.1| RNase3 domain protein [Enterococcus faecium 504]
gi|403041880|gb|EJY52861.1| RNase3 domain protein [Enterococcus faecium 503]
gi|404455475|gb|EKA02322.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404459040|gb|EKA05413.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404462920|gb|EKA08624.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|404470242|gb|EKA14895.1| ribonuclease III [Enterococcus sp. GMD1E]
gi|410733813|gb|EKQ75735.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722027|gb|EKU84927.1| hypothetical protein HMPREF9307_02374 [Enterococcus durans
FB129-CNAB-4]
gi|430438488|gb|ELA48914.1| ribonuclease III [Enterococcus faecium E0045]
gi|430441295|gb|ELA51410.1| ribonuclease III [Enterococcus faecium E0120]
gi|430444325|gb|ELA54180.1| ribonuclease III [Enterococcus faecium E0164]
gi|430479277|gb|ELA56533.1| ribonuclease III [Enterococcus faecium E0269]
gi|430479806|gb|ELA57016.1| ribonuclease III [Enterococcus faecium E0333]
gi|430484695|gb|ELA61657.1| ribonuclease III [Enterococcus faecium E0679]
gi|430487639|gb|ELA64359.1| ribonuclease III [Enterococcus faecium E0680]
gi|430490104|gb|ELA66649.1| ribonuclease III [Enterococcus faecium E0688]
gi|430492877|gb|ELA69218.1| ribonuclease III [Enterococcus faecium E1007]
gi|430495720|gb|ELA71856.1| ribonuclease III [Enterococcus faecium E1050]
gi|430537780|gb|ELA78095.1| ribonuclease III [Enterococcus faecium E1133]
gi|430544246|gb|ELA84286.1| ribonuclease III [Enterococcus faecium E1552]
gi|430545008|gb|ELA85010.1| ribonuclease III [Enterococcus faecium E1392]
gi|430550073|gb|ELA89882.1| ribonuclease III [Enterococcus faecium E1574]
gi|430550664|gb|ELA90447.1| ribonuclease III [Enterococcus faecium E1573]
gi|430554502|gb|ELA94104.1| ribonuclease III [Enterococcus faecium E1575]
gi|430555269|gb|ELA94813.1| ribonuclease III [Enterococcus faecium E1576]
gi|430559587|gb|ELA98935.1| ribonuclease III [Enterococcus faecium E1578]
gi|430565205|gb|ELB04374.1| ribonuclease III [Enterococcus faecium E1604]
gi|430568404|gb|ELB07451.1| ribonuclease III [Enterococcus faecium E1613]
gi|430570127|gb|ELB09101.1| ribonuclease III [Enterococcus faecium E1620]
gi|430571981|gb|ELB10853.1| ribonuclease III [Enterococcus faecium E1622]
gi|430576230|gb|ELB14899.1| ribonuclease III [Enterococcus faecium E1623]
gi|430579117|gb|ELB17653.1| ribonuclease III [Enterococcus faecium E1626]
gi|430580771|gb|ELB19237.1| ribonuclease III [Enterococcus faecium E1627]
gi|430585469|gb|ELB23754.1| ribonuclease III [Enterococcus faecium E1630]
gi|430586733|gb|ELB24984.1| ribonuclease III [Enterococcus faecium E1634]
gi|430589869|gb|ELB27969.1| ribonuclease III [Enterococcus faecium E1731]
gi|430590126|gb|ELB28211.1| ribonuclease III [Enterococcus faecium E1861]
gi|430596207|gb|ELB34050.1| ribonuclease III [Enterococcus faecium E1972]
gi|430599913|gb|ELB37595.1| ribonuclease III [Enterococcus faecium E1904]
gi|430600309|gb|ELB37962.1| ribonuclease III [Enterococcus faecium E2039]
gi|430604945|gb|ELB42367.1| ribonuclease III [Enterococcus faecium E2071]
gi|430606232|gb|ELB43590.1| ribonuclease III [Enterococcus faecium E2134]
gi|430610855|gb|ELB47985.1| ribonuclease III [Enterococcus faecium E2297]
gi|430615608|gb|ELB52552.1| ribonuclease III [Enterococcus faecium E2883]
gi|430622443|gb|ELB59164.1| ribonuclease III [Enterococcus faecium E3346]
gi|430627198|gb|ELB63715.1| ribonuclease III [Enterococcus faecium E4215]
gi|430629003|gb|ELB65425.1| ribonuclease III [Enterococcus faecium E1321]
gi|430632768|gb|ELB68969.1| ribonuclease III [Enterococcus faecium E1644]
gi|430633594|gb|ELB69749.1| ribonuclease III [Enterococcus faecium E2369]
gi|430638998|gb|ELB74889.1| ribonuclease III [Enterococcus faecium E2560]
gi|430639813|gb|ELB75668.1| ribonuclease III [Enterococcus faecium E4389]
gi|430645870|gb|ELB81372.1| ribonuclease III [Enterococcus faecium E6012]
gi|430650194|gb|ELB85548.1| ribonuclease III [Enterococcus faecium E6045]
gi|445189566|gb|AGE31208.1| Ribonuclease III family protein [Enterococcus faecium NRRL B-2354]
Length = 131
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + +R V Q L+Q++L + L+
Sbjct: 7 LNGLALAYVGDAIYEIYVRDHLIDQGETKPNKLHRAATNYVSANAQAFLIQQMLEEHLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE R G+N S + + A Y A+ E L GYL+LT R+E++ +
Sbjct: 67 EEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELIRWCIQ 124
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 125 KVGEKNG 131
>gi|160916265|ref|ZP_02078472.1| hypothetical protein EUBDOL_02292 [Eubacterium dolichum DSM 3991]
gi|158431989|gb|EDP10278.1| RNase3 domain protein [Eubacterium dolichum DSM 3991]
Length = 128
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM-----AVVRCETQDALLQKLLND 171
+N +LAY+GD + + R+ L +RV+ A V + Q A L++L
Sbjct: 6 YNGTALAYMGDAVMSMLVRKKLLAQGYQ----QSRVLQKKSEAWVSAKAQAAFLKELEAM 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
S+ EE D+V G+N N ++K + A Y A+ LE + GYLYL
Sbjct: 62 SFFREEEWDIVLRGRNT---NPKSKAKNADMITYRYATGLEAVFGYLYLMK 109
>gi|295108533|emb|CBL22486.1| Uncharacterized protein conserved in bacteria [Ruminococcus obeum
A2-162]
Length = 141
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAYIGD +YEL R + + + + ++V+ Q A+++ + + L+
Sbjct: 22 YSPLTLAYIGDGVYELIIRTILVKKGNCPVNRLHKKASSLVKAGAQSAIMEVI--EEKLT 79
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE V R G+N S + A A Y RA+ E L GYLYL
Sbjct: 80 PEELSVYRRGRNAHSPTM--AKHATMADYRRATGFEALMGYLYL 121
>gi|373859610|ref|ZP_09602336.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372450605|gb|EHP24090.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD ++E Y R H L + + + V + Q + + + ++ LS
Sbjct: 13 LNSLALAYMGDAVFETYVRHHLLQTGKVRPNQLHREATNYVSAKAQAMVAHQFIEEAILS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+E V++ G+N S + + Y ++ E L G LYL+ N RL++++ K
Sbjct: 73 EDEIAVLKRGRNAKSGS--VPKNTDVQTYRYSTGFEALIGTLYLSKNEVRLQELVKK 127
>gi|336435107|ref|ZP_08614825.1| hypothetical protein HMPREF0988_00410 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336002000|gb|EGN32127.1| hypothetical protein HMPREF0988_00410 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 155
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 100 YERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV---- 155
Y R P +G V++ LAYIGDC+++L + + I + N +V +
Sbjct: 12 YIREALELPDMGA--EVYSPLVLAYIGDCVFDL------VIKSMVISKGNKQVQKLHEET 63
Query: 156 ---VRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLET 212
V+ Q A+++ + YL+ EE V R G+N S + + Y RA+ E
Sbjct: 64 SKYVQASAQSAMMRAM--QPYLTEEEHAVYRRGRNTRSVS--PAKNQSITDYRRATGFEA 119
Query: 213 LAGYLYLTNA-NRLEDVMSKLGF 234
L G+LYL +RL +++ K+G
Sbjct: 120 LIGHLYLKREYDRLMELV-KIGL 141
>gi|312874781|ref|ZP_07734800.1| RNase3 domain protein [Lactobacillus iners LEAF 2053A-b]
gi|325912404|ref|ZP_08174799.1| RNase3 domain protein [Lactobacillus iners UPII 143-D]
gi|311089526|gb|EFQ47951.1| RNase3 domain protein [Lactobacillus iners LEAF 2053A-b]
gi|325475746|gb|EGC78917.1| RNase3 domain protein [Lactobacillus iners UPII 143-D]
Length = 147
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE R+H + P ++ Y V + Q L+ K+ + L+A
Sbjct: 21 ALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATH---YVSAKAQAGLITKMKELNKLTA 77
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE + + G+N AN+ T + + Y ++ E + GYLYL+ +RL+++++
Sbjct: 78 EEMAIFKRGRN---ANSYTHAKNTSISTYKLSTGFEAMIGYLYLSKQYDRLDNLIA 130
>gi|153813241|ref|ZP_01965909.1| hypothetical protein RUMOBE_03657 [Ruminococcus obeum ATCC 29174]
gi|149830654|gb|EDM85745.1| RNase3 domain protein [Ruminococcus obeum ATCC 29174]
Length = 141
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAYIGD +YEL R + + + + ++V+ Q A+++ + + L+
Sbjct: 22 YSPLTLAYIGDGVYELIIRTILVKKGNCPVNRLHKKASSLVKAGAQSAIMEVI--EEELT 79
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE V R G+N S + A A Y RA+ E L GYLYL
Sbjct: 80 PEELSVYRRGRNAHSPTM--AKHATMADYRRATGFEALMGYLYL 121
>gi|366087750|ref|ZP_09454235.1| ribonuclease III family protein [Lactobacillus zeae KCTC 3804]
Length = 143
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y R H L L R V + Q AL+ + ++ L
Sbjct: 8 LNGIALAYMGDAVYEVYVREHLLKRGLVRPAALQRAAKDFVSAKAQAALIAGMEDEHLLD 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
EE V + G+N S + Y ++ E L GYL+L ++
Sbjct: 68 DEEVAVFKHGRNAKSYT--HAKNTDVVTYRVSTGFEALFGYLHLEKHDK 114
>gi|153855860|ref|ZP_01996835.1| hypothetical protein DORLON_02857 [Dorea longicatena DSM 13814]
gi|149751828|gb|EDM61759.1| RNase3 domain protein [Dorea longicatena DSM 13814]
Length = 147
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQKLLNDSY 173
+LAYIGDCIY+L + L I E N +V + V+ Q +++ + +
Sbjct: 31 TLAYIGDCIYDL------IIKTLVINEGNRQVQKLHQKTSSYVQASAQSKMMRTM--QEH 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
L+ EE + + G+N S + + Y RA+ E L GYLYL + + K+G
Sbjct: 83 LTEEEHAIYKRGRNAKSVS--PAKNQSITDYRRATGFEALLGYLYLKKEWKRMLELVKIG 140
Query: 234 F 234
Sbjct: 141 L 141
>gi|402312567|ref|ZP_10831491.1| ribonuclease III domain protein [Lachnospiraceae bacterium ICM7]
gi|404483020|ref|ZP_11018245.1| hypothetical protein HMPREF1135_01305 [Clostridiales bacterium
OBRC5-5]
gi|400369025|gb|EJP22028.1| ribonuclease III domain protein [Lachnospiraceae bacterium ICM7]
gi|404344110|gb|EJZ70469.1| hypothetical protein HMPREF1135_01305 [Clostridiales bacterium
OBRC5-5]
Length = 150
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
F+ LAYIGD +YEL R + + + N ++V+ Q A + KL+ND LS
Sbjct: 22 FSPLVLAYIGDAVYELIIRSILVSGGNRPVNKLNKDATSLVKAGAQ-AQIIKLINDE-LS 79
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
EE + + G+N S +T K A Y A+ E+L G+LYL N
Sbjct: 80 EEEFTIFKRGRN-SSPHTMAK-NASMTDYKYATGFESLIGFLYLDN 123
>gi|227552720|ref|ZP_03982769.1| ribonuclease III [Enterococcus faecium TX1330]
gi|293378884|ref|ZP_06625039.1| RNase3 domain protein [Enterococcus faecium PC4.1]
gi|424762690|ref|ZP_18190190.1| RNase3 domain protein [Enterococcus faecalis TX1337RF]
gi|431043158|ref|ZP_19492957.1| ribonuclease III [Enterococcus faecium E1590]
gi|431753324|ref|ZP_19541998.1| ribonuclease III [Enterococcus faecium E2620]
gi|431758676|ref|ZP_19547301.1| ribonuclease III [Enterococcus faecium E3083]
gi|431763440|ref|ZP_19551990.1| ribonuclease III [Enterococcus faecium E3548]
gi|227178120|gb|EEI59092.1| ribonuclease III [Enterococcus faecium TX1330]
gi|292642425|gb|EFF60580.1| RNase3 domain protein [Enterococcus faecium PC4.1]
gi|402424261|gb|EJV56448.1| RNase3 domain protein [Enterococcus faecium TX1337RF]
gi|430561602|gb|ELB00865.1| ribonuclease III [Enterococcus faecium E1590]
gi|430612231|gb|ELB49282.1| ribonuclease III [Enterococcus faecium E2620]
gi|430617044|gb|ELB53930.1| ribonuclease III [Enterococcus faecium E3083]
gi|430622213|gb|ELB58950.1| ribonuclease III [Enterococcus faecium E3548]
Length = 131
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R H + + +R V Q L+Q++L + L+
Sbjct: 7 LNGLALAYVGDAIYEIYVRDHLINQGETKPNKLHRAATNYVSANAQAFLIQQMLEEHLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV----MS 230
EE R G+N S + + A Y A+ E L GYL+LT R+E++ +
Sbjct: 67 EEEELYYRRGRNAKSHT--SAKNADVTTYRVATGFEALMGYLHLTKQTERMEELIRWCIQ 124
Query: 231 KLGFTNG 237
K+G NG
Sbjct: 125 KVGEKNG 131
>gi|347534162|ref|YP_004840832.1| hypothetical protein LSA_04520 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504218|gb|AEN98900.1| hypothetical protein LSA_04520 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 141
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+Y RRH + ++ + R V + Q L+ + D+ LS
Sbjct: 13 LNGVALAYLGDAVYEVYIRRHLIDEGVTRPNHLQRKATKYVSAKAQAGLISLMEEDNLLS 72
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
EE+ + G+N S + Y ++ E L G+L L+
Sbjct: 73 EEEQYFFKRGRNAKSYT--HAKNTSVVTYRVSTGFEALFGFLSLSG 116
>gi|392947833|ref|ZP_10313457.1| ribonuclease III [Lactobacillus pentosus KCA1]
gi|334881838|emb|CCB82748.1| putative uncharacterized protein lp_0611 [Lactobacillus pentosus
MP-10]
gi|339637565|emb|CCC16501.1| putative uncharacterized protein lp_0611 [Lactobacillus pentosus
IG1]
gi|392436930|gb|EIW14830.1| ribonuclease III [Lactobacillus pentosus KCA1]
Length = 136
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R+H + + + ++ V + Q AL++++ + L+
Sbjct: 8 LNGIALAYLGDAVYEPFIRQHLIESGYTKATKLHHHATHYVSAKAQAALIERMQAEEVLT 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
E DV + G+N S + + Y ++ E + GYL LT
Sbjct: 68 PTEVDVFKRGRNAKSHT--SAKHTDVLTYRISTGFEAVFGYLQLTQ 111
>gi|27467211|ref|NP_763848.1| hypothetical protein SE0293 [Staphylococcus epidermidis ATCC 12228]
gi|57866116|ref|YP_187767.1| hypothetical protein SERP0171 [Staphylococcus epidermidis RP62A]
gi|242241862|ref|ZP_04796307.1| ribonuclease III [Staphylococcus epidermidis W23144]
gi|293367906|ref|ZP_06614544.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|417911501|ref|ZP_12555206.1| RNase3 domain protein [Staphylococcus epidermidis VCU105]
gi|418604299|ref|ZP_13167657.1| RNase3 domain protein [Staphylococcus epidermidis VCU041]
gi|418611891|ref|ZP_13174954.1| RNase3 domain protein [Staphylococcus epidermidis VCU117]
gi|418621562|ref|ZP_13184331.1| RNase3 domain protein [Staphylococcus epidermidis VCU123]
gi|418626299|ref|ZP_13188912.1| RNase3 domain protein [Staphylococcus epidermidis VCU126]
gi|420166786|ref|ZP_14673466.1| hypothetical protein HMPREF9994_11243 [Staphylococcus epidermidis
NIHLM088]
gi|420172252|ref|ZP_14678762.1| hypothetical protein HMPREF9991_02379 [Staphylococcus epidermidis
NIHLM067]
gi|420175664|ref|ZP_14682098.1| hypothetical protein HMPREF9990_07996 [Staphylococcus epidermidis
NIHLM061]
gi|420182222|ref|ZP_14688360.1| hypothetical protein HMPREF9987_02482 [Staphylococcus epidermidis
NIHLM049]
gi|420188155|ref|ZP_14694169.1| hypothetical protein HMPREF9985_07877 [Staphylococcus epidermidis
NIHLM039]
gi|420195779|ref|ZP_14701566.1| hypothetical protein HMPREF9982_09501 [Staphylococcus epidermidis
NIHLM021]
gi|420196764|ref|ZP_14702503.1| hypothetical protein HMPREF9981_01880 [Staphylococcus epidermidis
NIHLM020]
gi|420202998|ref|ZP_14708584.1| hypothetical protein HMPREF9979_09702 [Staphylococcus epidermidis
NIHLM018]
gi|420207049|ref|ZP_14712552.1| hypothetical protein HMPREF9977_06085 [Staphylococcus epidermidis
NIHLM008]
gi|420213015|ref|ZP_14718356.1| hypothetical protein HMPREF9975_11429 [Staphylococcus epidermidis
NIHLM001]
gi|420218747|ref|ZP_14723801.1| hypothetical protein HMPREF9972_00780 [Staphylococcus epidermidis
NIH04008]
gi|420222647|ref|ZP_14727564.1| RNase3 domain protein [Staphylococcus epidermidis NIH08001]
gi|420225504|ref|ZP_14730334.1| RNase3 domain protein [Staphylococcus epidermidis NIH06004]
gi|420226419|ref|ZP_14731203.1| RNase3 domain protein [Staphylococcus epidermidis NIH05003]
gi|420228738|ref|ZP_14733455.1| RNase3 domain protein [Staphylococcus epidermidis NIH04003]
gi|420231106|ref|ZP_14735761.1| RNase3 domain protein [Staphylococcus epidermidis NIH051668]
gi|27314753|gb|AAO03890.1|AE016744_293 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57636774|gb|AAW53562.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
gi|242234640|gb|EES36952.1| ribonuclease III [Staphylococcus epidermidis W23144]
gi|291317935|gb|EFE58343.1| cysteine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
gi|341653078|gb|EGS76851.1| RNase3 domain protein [Staphylococcus epidermidis VCU105]
gi|374405316|gb|EHQ76258.1| RNase3 domain protein [Staphylococcus epidermidis VCU041]
gi|374821406|gb|EHR85469.1| RNase3 domain protein [Staphylococcus epidermidis VCU117]
gi|374828793|gb|EHR92618.1| RNase3 domain protein [Staphylococcus epidermidis VCU123]
gi|374832856|gb|EHR96559.1| RNase3 domain protein [Staphylococcus epidermidis VCU126]
gi|394232706|gb|EJD78319.1| hypothetical protein HMPREF9994_11243 [Staphylococcus epidermidis
NIHLM088]
gi|394242842|gb|EJD88220.1| hypothetical protein HMPREF9990_07996 [Staphylococcus epidermidis
NIHLM061]
gi|394242892|gb|EJD88269.1| hypothetical protein HMPREF9991_02379 [Staphylococcus epidermidis
NIHLM067]
gi|394250206|gb|EJD95400.1| hypothetical protein HMPREF9987_02482 [Staphylococcus epidermidis
NIHLM049]
gi|394255415|gb|EJE00366.1| hypothetical protein HMPREF9985_07877 [Staphylococcus epidermidis
NIHLM039]
gi|394262900|gb|EJE07652.1| hypothetical protein HMPREF9982_09501 [Staphylococcus epidermidis
NIHLM021]
gi|394267266|gb|EJE11867.1| hypothetical protein HMPREF9981_01880 [Staphylococcus epidermidis
NIHLM020]
gi|394268871|gb|EJE13422.1| hypothetical protein HMPREF9979_09702 [Staphylococcus epidermidis
NIHLM018]
gi|394276369|gb|EJE20710.1| hypothetical protein HMPREF9977_06085 [Staphylococcus epidermidis
NIHLM008]
gi|394277263|gb|EJE21589.1| hypothetical protein HMPREF9975_11429 [Staphylococcus epidermidis
NIHLM001]
gi|394288909|gb|EJE32807.1| RNase3 domain protein [Staphylococcus epidermidis NIH08001]
gi|394291821|gb|EJE35606.1| hypothetical protein HMPREF9972_00780 [Staphylococcus epidermidis
NIH04008]
gi|394293571|gb|EJE37285.1| RNase3 domain protein [Staphylococcus epidermidis NIH06004]
gi|394298795|gb|EJE42357.1| RNase3 domain protein [Staphylococcus epidermidis NIH05003]
gi|394300201|gb|EJE43717.1| RNase3 domain protein [Staphylococcus epidermidis NIH04003]
gi|394303181|gb|EJE46609.1| RNase3 domain protein [Staphylococcus epidermidis NIH051668]
Length = 132
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLDI 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 66 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|417658267|ref|ZP_12307903.1| RNase3 domain protein [Staphylococcus epidermidis VCU045]
gi|417910366|ref|ZP_12554088.1| RNase3 domain protein [Staphylococcus epidermidis VCU037]
gi|418606468|ref|ZP_13169745.1| RNase3 domain protein [Staphylococcus epidermidis VCU057]
gi|418609556|ref|ZP_13172698.1| RNase3 domain protein [Staphylococcus epidermidis VCU065]
gi|418624681|ref|ZP_13187351.1| RNase3 domain protein [Staphylococcus epidermidis VCU125]
gi|329738061|gb|EGG74282.1| RNase3 domain protein [Staphylococcus epidermidis VCU045]
gi|341650541|gb|EGS74361.1| RNase3 domain protein [Staphylococcus epidermidis VCU037]
gi|374406883|gb|EHQ77758.1| RNase3 domain protein [Staphylococcus epidermidis VCU065]
gi|374407875|gb|EHQ78720.1| RNase3 domain protein [Staphylococcus epidermidis VCU057]
gi|374826878|gb|EHR90754.1| RNase3 domain protein [Staphylococcus epidermidis VCU125]
Length = 128
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLDI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 118
>gi|339006565|ref|ZP_08639140.1| putative ribonuclease MrnC [Brevibacillus laterosporus LMG 15441]
gi|421875252|ref|ZP_16306846.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
gi|338775774|gb|EGP35302.1| putative ribonuclease MrnC [Brevibacillus laterosporus LMG 15441]
gi|372455720|emb|CCF16395.1| putative uncharacterized protein [Brevibacillus laterosporus GI-9]
Length = 135
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLS----IEEYNNRVMAVVRCETQDALLQKLLND 171
+ N LAY+GD Y Y R H + ++ + + NR +A + Q +L LL
Sbjct: 14 LINPLVLAYLGDATYAHYVRCHLITQGIAKPNLLHKTANRYVA---AKAQATILHHLLPS 70
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMS 230
L+ EE V+ G+N S ++ + A Y A++ E L GYLYL + RL++++
Sbjct: 71 --LTEEEMAQVKRGRNAKSGSS--AKNANIVDYRHATAFEALIGYLYLNGEDKRLQEIIQ 126
Query: 231 K 231
+
Sbjct: 127 Q 127
>gi|310659542|ref|YP_003937263.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|6899997|emb|CAB71306.1| hypothetical protein [[Clostridium] sticklandii]
gi|308826320|emb|CBH22358.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 119
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 125 IGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVV 182
+GD YE R H + P L + + + + V+ Q + +L+ LS +E VV
Sbjct: 1 MGDAAYEDRVRAHVIRKCPTLKVNDLHKEAVKYVKASAQAYAVLELMKQEQLSEDEVSVV 60
Query: 183 RWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
+ G+N S + A A Y A+ E L GYLY ++ +R+E+++ +
Sbjct: 61 KRGRNHAS---NAPKNANVAEYKYATGFEALLGYLYFSSLTDRMEEIIDE 107
>gi|418634176|ref|ZP_13196572.1| RNase3 domain protein [Staphylococcus epidermidis VCU129]
gi|374837478|gb|EHS01042.1| RNase3 domain protein [Staphylococcus epidermidis VCU129]
Length = 128
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAETLEYLLDI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSKRLENLL 118
>gi|227510714|ref|ZP_03940763.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227189835|gb|EEI69902.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 136
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
S N +LAY+GD YE++ RRH + ++ + V + Q AL+ + D
Sbjct: 6 SQLNGIALAYMGDAAYEVFIRRHLIEDGIAKPTRLQHAATNYVSAKAQAALIDLMTKDKL 65
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+ +E D + G+N S +T K Y ++ E + GYL L++ N
Sbjct: 66 LTDDEWDYFKRGRNAKS-HTHAK-NTDVITYRISTGFEAVFGYLCLSDQN 113
>gi|159478637|ref|XP_001697409.1| hypothetical protein CHLREDRAFT_176719 [Chlamydomonas reinhardtii]
gi|158274567|gb|EDP00349.1| predicted protein [Chlamydomonas reinhardtii]
Length = 178
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 104 LPNPPKVGK----PRSVFNAASLAYIGDCIYEL------YARRHFLFP-PLSIEEYNNRV 152
LP P G PRS+++ +LAY+GD ++E+ R F P+++
Sbjct: 35 LPPPQLTGSAAANPRSIYSPLALAYLGDAVWEVSMAAQAVGERDFSASMPITVSPAGAAA 94
Query: 153 MAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLET 212
+A L L+ E DV+RWG+N +A + A Y +A+++E
Sbjct: 95 IAAAAATDASGAAASQLL--VLTPAEADVLRWGRN--AAVGSIPKSVSAGTYKKATAVEV 150
Query: 213 LAGYLYLTNANRLEDVM 229
L +LYLT R ++
Sbjct: 151 LVAHLYLTAPQRCAQLI 167
>gi|302872445|ref|YP_003841081.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
gi|302575304|gb|ADL43095.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
Length = 127
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N + AYIGD +YE + R + P L+ Y+ R + V+ E Q + KL+ D
Sbjct: 1 MLNPLTYAYIGDAVYEQFIRTKIVEENPNLTPHIYHLRSIRYVKAENQAKAI-KLIWDI- 58
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
L+ EE+ V + G+N S + A Y A++ E L GYLY+ N
Sbjct: 59 LTEEEKSVAKRGRNAKSKT--IPKNADVLDYRFATAFECLIGYLYMNGKN 106
>gi|420191072|ref|ZP_14697008.1| hypothetical protein HMPREF9984_10292 [Staphylococcus epidermidis
NIHLM037]
gi|420200933|ref|ZP_14706571.1| hypothetical protein HMPREF9980_11896 [Staphylococcus epidermidis
NIHLM031]
gi|420203530|ref|ZP_14709092.1| hypothetical protein HMPREF9978_00070 [Staphylococcus epidermidis
NIHLM015]
gi|420233742|ref|ZP_14738321.1| RNase3 domain protein [Staphylococcus epidermidis NIH051475]
gi|394258030|gb|EJE02925.1| hypothetical protein HMPREF9984_10292 [Staphylococcus epidermidis
NIHLM037]
gi|394267414|gb|EJE12007.1| hypothetical protein HMPREF9980_11896 [Staphylococcus epidermidis
NIHLM031]
gi|394274491|gb|EJE18907.1| hypothetical protein HMPREF9978_00070 [Staphylococcus epidermidis
NIHLM015]
gi|394304916|gb|EJE48307.1| RNase3 domain protein [Staphylococcus epidermidis NIH051475]
Length = 132
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAETLEYLLDI 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 66 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|416127888|ref|ZP_11597153.1| RNase3 domain protein [Staphylococcus epidermidis FRI909]
gi|319399721|gb|EFV87970.1| RNase3 domain protein [Staphylococcus epidermidis FRI909]
Length = 128
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAETLEYLLDI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 118
>gi|402813948|ref|ZP_10863542.1| ribonuclease III [Paenibacillus alvei DSM 29]
gi|402507795|gb|EJW18316.1| ribonuclease III [Paenibacillus alvei DSM 29]
Length = 160
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCET-----QDALLQKLLNDSYLSA 176
LAYIGD I+E+ R++ + P N+R + R T + L +L+
Sbjct: 42 LAYIGDAIFEIAIRQYLISQP------NHRPNHLHREATGYVSAKAQARALALLAPHLTD 95
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
EE DVVR G+N S+ + A + Y +A++LE+L GYLYL N R++ ++ +
Sbjct: 96 EEADVVRQGRNTKSS---VPKSANVSEYRQATALESLFGYLYLNENFERMQQFVNMI 149
>gi|225377342|ref|ZP_03754563.1| hypothetical protein ROSEINA2194_02989 [Roseburia inulinivorans DSM
16841]
gi|225210873|gb|EEG93227.1| hypothetical protein ROSEINA2194_02989 [Roseburia inulinivorans DSM
16841]
Length = 144
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD IY+L R + E + R +V+ TQ +++ LL L+ EE
Sbjct: 27 TLAYIGDGIYDLVIRSLVVAKGNTRASELHKRTSQIVKAHTQAEMMEVLL--PILTEEEA 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
V + G+N S + A + Y +A+ E L GYLYL +
Sbjct: 85 AVYKRGRNAKSFT--MAKNATMSDYRKATGFEALMGYLYLKD 124
>gi|417646075|ref|ZP_12295954.1| RNase3 domain protein [Staphylococcus epidermidis VCU144]
gi|418629611|ref|ZP_13192108.1| RNase3 domain protein [Staphylococcus epidermidis VCU127]
gi|329729421|gb|EGG65824.1| RNase3 domain protein [Staphylococcus epidermidis VCU144]
gi|374833374|gb|EHR97062.1| RNase3 domain protein [Staphylococcus epidermidis VCU127]
Length = 132
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL+
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLDI 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 66 DWFTDEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|239825673|ref|YP_002948297.1| ribonuclease III [Geobacillus sp. WCH70]
gi|239805966|gb|ACS23031.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 139
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N +LAYIGD +YELY R H L P + + + + V + Q +L LL +
Sbjct: 13 LNGLALAYIGDAVYELYVRHHLLSNGNVKP---HQLHKQAIQYVSAKAQAKVLLTLLENE 69
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
L+ EE+ VVR G+N S + Y +++ E L GY +L N R+E+++
Sbjct: 70 LLTEEEQSVVRRGRNAKSGT--IPKNTDVQTYRYSTAFEALIGYHFLGNNEKRVEEII 125
>gi|312871512|ref|ZP_07731605.1| RNase3 domain protein [Lactobacillus iners LEAF 3008A-a]
gi|312872606|ref|ZP_07732674.1| RNase3 domain protein [Lactobacillus iners LEAF 2062A-h1]
gi|311091968|gb|EFQ50344.1| RNase3 domain protein [Lactobacillus iners LEAF 2062A-h1]
gi|311092907|gb|EFQ51258.1| RNase3 domain protein [Lactobacillus iners LEAF 3008A-a]
Length = 147
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE R+H + P ++ Y V + Q L+ K+ + L+A
Sbjct: 21 ALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATH---YVSAKAQAGLITKMKELNKLTA 77
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE + + G+N AN+ T + + Y ++ E + GYLYL+ +RL+++++
Sbjct: 78 EEIAIFKRGRN---ANSYTHAKNTSISTYKLSTGFEAMIGYLYLSKQYDRLDNLIA 130
>gi|421076447|ref|ZP_15537434.1| ribonuclease III [Pelosinus fermentans JBW45]
gi|392525458|gb|EIW48597.1| ribonuclease III [Pelosinus fermentans JBW45]
Length = 166
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY---LSAEE 178
LAY+GD + LY R L + E+ RV+ + + A +Q + S L+ +E
Sbjct: 40 LAYVGDAYFTLYVRTTLL----AYEQNKVRVLHTLDSKIVSATMQAVAYQSLENQLTEQE 95
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+V+ G+N A + + A A Y ++ E L GYLYL N RL +++ K
Sbjct: 96 MSIVKRGRN---AKSTVPKSATVAEYRNSTGFEALLGYLYLGKNYERLSELVEK 146
>gi|194468085|ref|ZP_03074071.1| ribonuclease III [Lactobacillus reuteri 100-23]
gi|194452938|gb|EDX41836.1| ribonuclease III [Lactobacillus reuteri 100-23]
Length = 137
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y R+H L +S + + V + Q AL+ + D LS
Sbjct: 9 LNGIALAYLGDAAYEVYIRQHLLTKGISKPTKLQHIATHYVSAKAQAALIDLMKKDELLS 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
EE + G+N AN+ T + Y ++ E + GYL L
Sbjct: 69 DEEWSYFKRGRN---ANSHTHAKNTSVMTYRISTGFEAVMGYLKLAG 112
>gi|392959716|ref|ZP_10325197.1| ribonuclease III [Pelosinus fermentans DSM 17108]
gi|421056355|ref|ZP_15519273.1| ribonuclease III [Pelosinus fermentans B4]
gi|421062062|ref|ZP_15524275.1| ribonuclease III [Pelosinus fermentans B3]
gi|421064336|ref|ZP_15526220.1| ribonuclease III [Pelosinus fermentans A12]
gi|421070070|ref|ZP_15531207.1| ribonuclease III [Pelosinus fermentans A11]
gi|392438193|gb|EIW16051.1| ribonuclease III [Pelosinus fermentans B4]
gi|392444782|gb|EIW22181.1| ribonuclease III [Pelosinus fermentans B3]
gi|392448808|gb|EIW25985.1| ribonuclease III [Pelosinus fermentans A11]
gi|392456100|gb|EIW32859.1| ribonuclease III [Pelosinus fermentans DSM 17108]
gi|392461281|gb|EIW37495.1| ribonuclease III [Pelosinus fermentans A12]
Length = 166
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY---LSAEE 178
LAY+GD + LY R L + E+ RV+ + + A +Q + S L+ +E
Sbjct: 40 LAYVGDAYFTLYVRTTLL----AYEQNKVRVLHTLDSKIVSATMQAVAYQSLENQLTEQE 95
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+V+ G+N A + + A A Y ++ E L GYLYL N RL +++ K
Sbjct: 96 MSIVKRGRN---AKSTVPKSATVAEYRNSTGFEALLGYLYLGKNYERLSELVEK 146
>gi|408355466|ref|YP_006843997.1| hypothetical protein AXY_01030 [Amphibacillus xylanus NBRC 15112]
gi|407726237|dbj|BAM46235.1| hypothetical protein AXY_01030 [Amphibacillus xylanus NBRC 15112]
Length = 133
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD IYE++ R + + + + + + + V + Q +L++ L+ L EE
Sbjct: 13 ALAYMGDAIYEVHVRDYLIRHHYAKVNDLHQAAIKYVSAKAQAKVLREWLDSGILDEEEL 72
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+VR G+N + + + Y +++ E L G+LY RL+++M
Sbjct: 73 SIVRRGRNAKAGS--VPKNTDVMTYRYSTAFEALLGFLYYAKYEQRLQELMQ 122
>gi|335046483|ref|ZP_08539506.1| RNase3 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
gi|333760269|gb|EGL37826.1| RNase3 domain protein [Oribacterium sp. oral taxon 108 str. F0425]
Length = 139
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SLAY+GD IY+ + R + S+ + N++ +V + Q +++ L + L+ EE
Sbjct: 17 SLAYVGDSIYDFFVRDRLIRDLSGSLNKINSKKKDLVCAKAQSDVMEYYLANELLTEEEL 76
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
V R +N S +R+K +G Y RA+ E + GYL+ N RL+ +M
Sbjct: 77 AVYRRARNHKS-QSRSK-NSGIGDYRRATGFEAVLGYLHYQNKEERLKALM 125
>gi|349611880|ref|ZP_08891110.1| hypothetical protein HMPREF1027_00537 [Lactobacillus sp. 7_1_47FAA]
gi|348608345|gb|EGY58330.1| hypothetical protein HMPREF1027_00537 [Lactobacillus sp. 7_1_47FAA]
Length = 147
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE R+H + P ++ Y V + Q L+ K+ + L+A
Sbjct: 21 ALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATH---YVSAKAQAGLITKMKELNKLTA 77
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE + + G+N AN+ T + + Y ++ E + GYLYL+ +RL+++++
Sbjct: 78 EEIAIFKRGRN---ANSYTHAKNTSISTYKLSTGFEAMIGYLYLSKQYDRLDNLIA 130
>gi|148543541|ref|YP_001270911.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
gi|184152947|ref|YP_001841288.1| hypothetical protein LAR_0292 [Lactobacillus reuteri JCM 1112]
gi|227363503|ref|ZP_03847623.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|325681890|ref|ZP_08161408.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148530575|gb|ABQ82574.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
gi|183224291|dbj|BAG24808.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071440|gb|EEI09743.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|324978534|gb|EGC15483.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 137
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y R+H L +S + + V + Q AL+ + D LS
Sbjct: 9 LNGIALAYLGDAAYEVYIRQHLLTKGISKPTKLQHIATHYVSAKAQAALIDLMKEDKLLS 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
EE + G+N AN+ T + Y ++ E + GYL L
Sbjct: 69 DEEWSYFKRGRN---ANSHTHAKNTSVMTYRISTGFEAVMGYLKLAG 112
>gi|259500941|ref|ZP_05743843.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335]
gi|302190607|ref|ZP_07266861.1| hypothetical protein LineA_01200 [Lactobacillus iners AB-1]
gi|309803770|ref|ZP_07697856.1| RNase3 domain protein [Lactobacillus iners LactinV 11V1-d]
gi|309804707|ref|ZP_07698772.1| RNase3 domain protein [Lactobacillus iners LactinV 09V1-c]
gi|309806521|ref|ZP_07700525.1| RNase3 domain protein [Lactobacillus iners LactinV 03V1-b]
gi|309809221|ref|ZP_07703091.1| RNase3 domain protein [Lactobacillus iners SPIN 2503V10-D]
gi|315653978|ref|ZP_07906894.1| ribonuclease III [Lactobacillus iners ATCC 55195]
gi|325913100|ref|ZP_08175470.1| RNase3 domain protein [Lactobacillus iners UPII 60-B]
gi|329920516|ref|ZP_08277248.1| RNase3 domain protein [Lactobacillus iners SPIN 1401G]
gi|259167635|gb|EEW52130.1| cysteine-tRNA ligase [Lactobacillus iners DSM 13335]
gi|308164179|gb|EFO66440.1| RNase3 domain protein [Lactobacillus iners LactinV 11V1-d]
gi|308166099|gb|EFO68317.1| RNase3 domain protein [Lactobacillus iners LactinV 09V1-c]
gi|308167120|gb|EFO69295.1| RNase3 domain protein [Lactobacillus iners LactinV 03V1-b]
gi|308170455|gb|EFO72478.1| RNase3 domain protein [Lactobacillus iners SPIN 2503V10-D]
gi|315488674|gb|EFU78320.1| ribonuclease III [Lactobacillus iners ATCC 55195]
gi|325477521|gb|EGC80663.1| RNase3 domain protein [Lactobacillus iners UPII 60-B]
gi|328936192|gb|EGG32645.1| RNase3 domain protein [Lactobacillus iners SPIN 1401G]
Length = 147
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE R+H + P ++ Y V + Q L+ K+ + L+A
Sbjct: 21 ALAYLGDGVYEAAIRQHLVKGGIVRPQHLQGYATH---YVSAKAQAGLITKMKELNKLTA 77
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
EE + + G+N AN+ T + + Y ++ E + GYLYL+ +RL+++++
Sbjct: 78 EEIAIFKRGRN---ANSYTHAKNTSISTYKLSTGFEAMIGYLYLSKQYDRLDNLIA 130
>gi|363898042|ref|ZP_09324579.1| hypothetical protein HMPREF9624_01141 [Oribacterium sp. ACB7]
gi|361957687|gb|EHL10994.1| hypothetical protein HMPREF9624_01141 [Oribacterium sp. ACB7]
Length = 139
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SLAY+GD IY+ + R + S+ + N++ +V + Q +++ L + L+ EE
Sbjct: 17 SLAYVGDSIYDFFVRDRLIRDLSGSLNKINSKKKDLVCAKAQSDVMEYYLANELLTEEEL 76
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
V R +N S +R+K +G Y RA+ E + GYL+ N RL+ +M
Sbjct: 77 AVYRRARNHKS-QSRSK-NSGIGDYRRATGFEAVLGYLHYQNKEERLKALM 125
>gi|377832152|ref|ZP_09815116.1| RNase3 domain protein [Lactobacillus mucosae LM1]
gi|377554159|gb|EHT15874.1| RNase3 domain protein [Lactobacillus mucosae LM1]
Length = 137
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+H L +S ++ V + Q AL+ + D L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQHLLALGMSKPNRLQHQATHYVSAKAQAALIDLMKADELLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
+E + G+N AN+ T + Y ++ E L GYL L+
Sbjct: 69 EDEWSYFKRGRN---ANSYTHAKHTSVLTYRMSTGFEALFGYLQLSG 112
>gi|419718487|ref|ZP_14245804.1| ribonuclease III domain protein [Lachnoanaerobaculum saburreum
F0468]
gi|383305322|gb|EIC96690.1| ribonuclease III domain protein [Lachnoanaerobaculum saburreum
F0468]
Length = 149
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 103 WLPNPPKVGKPRSV-FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCET 160
+L P + + + F+ LAYIGD +YEL R + + + N ++V+
Sbjct: 7 YLLKPFNIERKEATEFSPLVLAYIGDAVYELIIRSILVSMGNRPVNKLNKDATSLVKASA 66
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q ++ KL++DS LS +E V + G+N S +T K A Y A+ E L G+LYL
Sbjct: 67 QSEII-KLISDS-LSDKEYTVFKRGRN-SSPHTMAK-NASMTDYKYATGFEALIGFLYLD 122
Query: 221 N 221
N
Sbjct: 123 N 123
>gi|420156993|ref|ZP_14663833.1| ribonuclease III domain protein [Clostridium sp. MSTE9]
gi|394757003|gb|EJF40062.1| ribonuclease III domain protein [Clostridium sp. MSTE9]
Length = 130
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 101 ERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCE 159
ER+L K PR + + +LA++GD ++EL+ R + + + +A V C
Sbjct: 2 ERFLE---KDCDPRQL-SPLTLAFVGDGVFELFVRERLVCQANCPVNTLHKNAVAQVCCG 57
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
Q QKL+ + EE V R G+N + + + + A Y+ A++LE L GYLYL
Sbjct: 58 AQAQAAQKLI--PLFTEEEEAVFRRGRN--AKVSHVPKNSSPADYHAATALEALFGYLYL 113
>gi|291544518|emb|CBL17627.1| Uncharacterized protein conserved in bacteria [Ruminococcus
champanellensis 18P13]
Length = 134
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLN 170
K + ++ +LA++GD +YE R L + + +N + V E Q A + +L
Sbjct: 7 KQVNAYSPLALAFLGDSVYECMMRSRILGSANMPNAKLHNLTIRRVCAEYQSAAVDVIL- 65
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
L+ +E+ V+R G+N + NT + A Y RA++LE L GYL+L +RLE++
Sbjct: 66 -PMLTEQEQTVLRRGRN-ATGNT-VPKHADVQTYRRATALECLFGYLHLLGRQDRLEELF 122
Query: 230 S 230
+
Sbjct: 123 A 123
>gi|227545182|ref|ZP_03975231.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338203863|ref|YP_004650008.1| ribonuclease III [Lactobacillus reuteri SD2112]
gi|423335821|ref|ZP_17313592.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|227184828|gb|EEI64899.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336449103|gb|AEI57718.1| ribonuclease III [Lactobacillus reuteri SD2112]
gi|337729044|emb|CCC04167.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 137
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+Y R+H L +S + + V + Q AL+ + D LS
Sbjct: 9 LNGIALAYLGDAAYEVYIRQHLLTKGISKPTKLQHIATHYVSAKAQAALIDLMKEDELLS 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
EE + G+N AN+ T + Y ++ E + GYL L
Sbjct: 69 DEEWSYFKRGRN---ANSHTHAKNTSVMTYRISTGFEAVMGYLKLAG 112
>gi|282875019|ref|ZP_06283894.1| RNase3 domain protein [Staphylococcus epidermidis SK135]
gi|417914058|ref|ZP_12557713.1| RNase3 domain protein [Staphylococcus epidermidis VCU109]
gi|419772793|ref|ZP_14298819.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-K]
gi|281296347|gb|EFA88866.1| RNase3 domain protein [Staphylococcus epidermidis SK135]
gi|341653889|gb|EGS77654.1| RNase3 domain protein [Staphylococcus epidermidis VCU109]
gi|383358886|gb|EID36328.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-K]
Length = 128
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLGI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 118
>gi|34762388|ref|ZP_00143390.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|294784132|ref|ZP_06749433.1| RNase3 domain-containing protein [Fusobacterium sp. 3_1_27]
gi|27887970|gb|EAA25036.1| hypothetical protein FNV2059 [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|294488202|gb|EFG35547.1| RNase3 domain-containing protein [Fusobacterium sp. 3_1_27]
Length = 129
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K+++D
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIDD---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE ++ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKII--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|251809947|ref|ZP_04824420.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060]
gi|417657370|ref|ZP_12307035.1| RNase3 domain protein [Staphylococcus epidermidis VCU028]
gi|418326353|ref|ZP_12937539.1| RNase3 domain protein [Staphylococcus epidermidis VCU071]
gi|418412971|ref|ZP_12986218.1| hypothetical protein HMPREF9281_01822 [Staphylococcus epidermidis
BVS058A4]
gi|418617606|ref|ZP_13180497.1| RNase3 domain protein [Staphylococcus epidermidis VCU120]
gi|418664660|ref|ZP_13226127.1| RNase3 domain protein [Staphylococcus epidermidis VCU081]
gi|419770363|ref|ZP_14296443.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-250]
gi|420164366|ref|ZP_14671096.1| hypothetical protein HMPREF9995_10531 [Staphylococcus epidermidis
NIHLM095]
gi|420169346|ref|ZP_14675947.1| hypothetical protein HMPREF9993_11542 [Staphylococcus epidermidis
NIHLM087]
gi|420171646|ref|ZP_14678184.1| hypothetical protein HMPREF9992_11909 [Staphylococcus epidermidis
NIHLM070]
gi|420186447|ref|ZP_14692515.1| hypothetical protein HMPREF9986_11916 [Staphylococcus epidermidis
NIHLM040]
gi|420208683|ref|ZP_14714141.1| hypothetical protein HMPREF9976_02435 [Staphylococcus epidermidis
NIHLM003]
gi|420213828|ref|ZP_14719110.1| hypothetical protein HMPREF9974_02171 [Staphylococcus epidermidis
NIH05005]
gi|420218202|ref|ZP_14723300.1| hypothetical protein HMPREF9973_11602 [Staphylococcus epidermidis
NIH05001]
gi|421607882|ref|ZP_16049116.1| hypothetical protein B440_05971 [Staphylococcus epidermidis
AU12-03]
gi|251806490|gb|EES59147.1| ribonuclease III [Staphylococcus epidermidis BCM-HMP0060]
gi|329734675|gb|EGG70982.1| RNase3 domain protein [Staphylococcus epidermidis VCU028]
gi|365225764|gb|EHM67002.1| RNase3 domain protein [Staphylococcus epidermidis VCU071]
gi|374410316|gb|EHQ81075.1| RNase3 domain protein [Staphylococcus epidermidis VCU081]
gi|374818033|gb|EHR82205.1| RNase3 domain protein [Staphylococcus epidermidis VCU120]
gi|383357309|gb|EID34784.1| RNase3 domain protein [Staphylococcus aureus subsp. aureus IS-250]
gi|394231376|gb|EJD77006.1| hypothetical protein HMPREF9993_11542 [Staphylococcus epidermidis
NIHLM087]
gi|394231755|gb|EJD77378.1| hypothetical protein HMPREF9995_10531 [Staphylococcus epidermidis
NIHLM095]
gi|394237108|gb|EJD82603.1| hypothetical protein HMPREF9992_11909 [Staphylococcus epidermidis
NIHLM070]
gi|394252163|gb|EJD97204.1| hypothetical protein HMPREF9986_11916 [Staphylococcus epidermidis
NIHLM040]
gi|394281384|gb|EJE25633.1| hypothetical protein HMPREF9976_02435 [Staphylococcus epidermidis
NIHLM003]
gi|394284226|gb|EJE28380.1| hypothetical protein HMPREF9974_02171 [Staphylococcus epidermidis
NIH05005]
gi|394284682|gb|EJE28784.1| hypothetical protein HMPREF9973_11602 [Staphylococcus epidermidis
NIH05001]
gi|406656496|gb|EKC82901.1| hypothetical protein B440_05971 [Staphylococcus epidermidis
AU12-03]
gi|410879564|gb|EKS27405.1| hypothetical protein HMPREF9281_01822 [Staphylococcus epidermidis
BVS058A4]
Length = 132
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLGI 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 66 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|418328477|ref|ZP_12939588.1| RNase3 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
gi|365231795|gb|EHM72812.1| RNase3 domain protein [Staphylococcus epidermidis 14.1.R1.SE]
Length = 132
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL
Sbjct: 9 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAETLEYLLEI 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 66 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 122
>gi|451817040|ref|YP_007453241.1| mini-ribonuclease 3 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451783019|gb|AGF53987.1| mini-ribonuclease 3 [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 137
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L LS + + + V+ ++Q ++ ++ D
Sbjct: 17 LLNPLQLALIGDGVYEIFIRNYILTKNSALSANKIHINAIKYVKAKSQANIMHEIEKD-- 74
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
L EE + + G+N S + A Y A+ E L GYLYL N RL+ + ++
Sbjct: 75 LDEEEEGIYKRGRNAKSQT--VPKNADVRDYRMATGFEALVGYLYLIGNRERLKAIFNQ 131
>gi|218134244|ref|ZP_03463048.1| hypothetical protein BACPEC_02136 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991619|gb|EEC57625.1| RNase3 domain protein [[Bacteroides] pectinophilus ATCC 43243]
Length = 154
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD Y+L R + L + + + N +VR + Q ++ + + L EE
Sbjct: 35 TLAYIGDDAYDLVIRTYLLGKGNMPVNKLNRMADGLVRAKAQSDMMDVI--EPMLDEEEH 92
Query: 180 DVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
V + G+N A + TK + A A Y RA+ E L GYLYL
Sbjct: 93 AVYKRGRN---AKSYTKAKNATVADYRRATGFEALMGYLYL 130
>gi|109158038|pdb|2GSL|A Chain A, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1.
gi|109158039|pdb|2GSL|B Chain B, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1.
gi|109158040|pdb|2GSL|C Chain C, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1.
gi|109158041|pdb|2GSL|D Chain D, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1.
gi|109158042|pdb|2GSL|E Chain E, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1.
gi|109158043|pdb|2GSL|F Chain F, X-Ray Crystal Structure Of Protein Fn1578 From
Fusobacterium Nucleatum. Northeast Structural Genomics
Consortium Target Nr1
Length = 137
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K++ND
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69
Query: 177 EERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
EE V+ GK ++N +T R Y A++LE + G YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVXEYKEATALEAIIGAXYL 111
>gi|255282795|ref|ZP_05347350.1| cysteine--tRNA ligase [Bryantella formatexigens DSM 14469]
gi|255266569|gb|EET59774.1| RNase3 domain protein [Marvinbryantia formatexigens DSM 14469]
Length = 155
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD I++L R + +++ + + +V+ Q ++++++ L+ EE
Sbjct: 30 LAYIGDDIFDLVIRTMLVRQHNCQVQKLHKKASMLVKASAQAEMIEEIM--PLLTEEELA 87
Query: 181 VVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL-TNANRLEDVM 229
+ R G N A TK + A + Y++A+ LE L GYLYL + R+ D+M
Sbjct: 88 IYRRGHN---AKPHTKAKNATHSDYHKATGLEALMGYLYLKKDMRRIVDLM 135
>gi|160937870|ref|ZP_02085228.1| hypothetical protein CLOBOL_02762 [Clostridium bolteae ATCC
BAA-613]
gi|158439096|gb|EDP16850.1| hypothetical protein CLOBOL_02762 [Clostridium bolteae ATCC
BAA-613]
Length = 156
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE+ R + + + + + + +V+ TQ L++ + + L+ EE
Sbjct: 33 LAYIGDSVYEVIIRTKVINRGSMQVNKMHKQSSELVKAGTQAELIKAI--EDMLTQEEHA 90
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
V + G+N SA + + A Y A+ +E L G+L+L NRL ++S+
Sbjct: 91 VFKRGRNAKSAT--SAKNASVIDYRMATGMEALVGWLFLRQEYNRLVYLISQ 140
>gi|418614165|ref|ZP_13177149.1| RNase3 domain protein [Staphylococcus epidermidis VCU118]
gi|374821446|gb|EHR85507.1| RNase3 domain protein [Staphylococcus epidermidis VCU118]
Length = 128
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAETLEYLLEI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+++
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLL 118
>gi|160881447|ref|YP_001560415.1| ribonuclease III [Clostridium phytofermentans ISDg]
gi|160430113|gb|ABX43676.1| ribonuclease III [Clostridium phytofermentans ISDg]
Length = 144
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD IY+L R + S + + + + ++V+ Q +L + L+ EE
Sbjct: 27 TLAYIGDGIYDLIIRTMLVEKGNSQVNKLHQKASSLVKATAQKEILHAI--QDILTEEEL 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
V + G+N S T + A Y A+ E + GYLY+T
Sbjct: 85 GVFKRGRNAKSVTT--AKNASVTDYRIATGFEAMIGYLYMTE 124
>gi|210623153|ref|ZP_03293608.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275]
gi|210153797|gb|EEA84803.1| hypothetical protein CLOHIR_01558 [Clostridium hiranonis DSM 13275]
Length = 131
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS--IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAY+GD +YE Y R + + + + + + + V Q ++ + ND L+ EE
Sbjct: 14 LAYLGDTVYESYIREYLIKKNCNNKVNTLHKQAIKYVNANAQSKVIHTIEND--LTEEEM 71
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKLGFT 235
+ + G+N S NT K Y A+ E L GYLYL +RLE+++ + G T
Sbjct: 72 RIFKRGRNQKS-NTAPK-NMDIVDYKHATGFEALIGYLYLDKQIDRLEEIVRR-GIT 125
>gi|421765837|ref|ZP_16202617.1| putative ribonuclease III family protein [Lactococcus garvieae
DCC43]
gi|407625607|gb|EKF52302.1| putative ribonuclease III family protein [Lactococcus garvieae
DCC43]
Length = 133
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLN 170
K + N +LAYIGD +YE++ R + L L+ E + V + Q AL++K+
Sbjct: 4 KDAELLNGVALAYIGDAVYEVFVRDYLLSKGLTKPGELQRQATKYVSAKAQAALIRKMEE 63
Query: 171 DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
+++L+ EE + + G+N S T + Y ++ E + G+L+LT
Sbjct: 64 ENFLTEEEMNYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGFLHLT 111
>gi|315652373|ref|ZP_07905362.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485347|gb|EFU75740.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 149
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 103 WLPNPPKVGKPRSV-FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCET 160
+L P + + + F+ LAYIGD +YEL R + + + N ++V+
Sbjct: 7 YLLKPFNIERKEATEFSPLVLAYIGDAVYELIIRSILVSMGNRPVNKLNRDATSLVKASA 66
Query: 161 QDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
Q ++ KL++DS LS +E V + G+N S +T K A Y A+ E L G+LYL
Sbjct: 67 QSEII-KLISDS-LSDKEYTVFKRGRN-SSPHTMAK-NASMTDYKYATGFEALIGFLYLD 122
Query: 221 N 221
N
Sbjct: 123 N 123
>gi|422933740|ref|ZP_16966515.1| hypothetical protein HMPREF9094_0623 [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339891356|gb|EGQ80347.1| hypothetical protein HMPREF9094_0623 [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
Length = 141
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V + V + Q + +K+++D
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIRTLNRYVKSKVNAKYQSLIYKKIIDD---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|304438772|ref|ZP_07398700.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372774|gb|EFM26352.1| ribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 138
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 109 KVGKPRSVFNA-----ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDA 163
KVGK + A SLAYIGD +YEL+ R +F L + N V Q
Sbjct: 10 KVGKVMTELEARNLNPLSLAYIGDAVYELFIRT-MIFRNLPPNQLNREAKKYVAAYAQAD 68
Query: 164 LLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
+K+++ L+ +E ++ G+N NT K ++ Y A+ +ETL GYLY+T +
Sbjct: 69 FAEKIMD--ILNEDEIYFLKRGRN-KKQNTMAKNQS-VGDYKIATGVETLFGYLYITGKH 124
Query: 224 -RLEDVMSKLGFTNG 237
R+ +++ + G G
Sbjct: 125 ERMVELLER-GLNEG 138
>gi|291519017|emb|CBK74238.1| Uncharacterized protein conserved in bacteria [Butyrivibrio
fibrisolvens 16/4]
Length = 146
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD I+++ R + ++ + + R +VV+ TQ A+ L+ DS+ + EE
Sbjct: 27 TLAYIGDAIFDVVIRSILVNKGNTAVNKLHQRASSVVKAHTQAAMATALM-DSF-TDEEA 84
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
D R G+N +T+ K A Y A+ E + GYLYLT N +R+ ++++
Sbjct: 85 DWYRRGRN-SKPHTKAK-NATTMDYLEATGFEAVMGYLYLTGNMDRICELIN 134
>gi|317126836|ref|YP_004093118.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315471784|gb|ADU28387.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 139
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 110 VGKPRSVFNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKL 168
V +P + NA +LAY+GD + E Y R + + + + V + Q +L
Sbjct: 7 VTEPEQI-NALALAYMGDAVLETYVRYRLIAKGQVRPNKLHREGTKYVSAKAQAKVLHTF 65
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLED 227
+ L+ EE+ V G+N S + A Y +++ E L G+LYLTN RL++
Sbjct: 66 FEKNLLTDEEKSVALRGRNAKSGT--VPKNTDHATYRYSTAFEALIGFLYLTNKLARLDE 123
Query: 228 VMSK 231
++ +
Sbjct: 124 LIGQ 127
>gi|325263765|ref|ZP_08130498.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Clostridium sp. D5]
gi|324030803|gb|EGB92085.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Clostridium sp. D5]
Length = 152
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGDC+Y+L + + + + + V+ TQ +++ + +L+ EE
Sbjct: 32 LAYIGDCVYDLAIKTMIISRGNKQVHKLHEETSRFVQASTQSLMMRTM--QEHLTEEEHA 89
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
V R G+N S + + Y RA+ E L GYLYL RL D++
Sbjct: 90 VYRRGRNAKSVS--PAKNQSITDYRRATGFEALIGYLYLKKEYKRLMDLV 137
>gi|357054166|ref|ZP_09115257.1| hypothetical protein HMPREF9467_02229 [Clostridium clostridioforme
2_1_49FAA]
gi|355385051|gb|EHG32104.1| hypothetical protein HMPREF9467_02229 [Clostridium clostridioforme
2_1_49FAA]
Length = 156
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE+ R + + + + + + +V+ TQ L++ + N L+ EE
Sbjct: 33 LAYIGDSVYEVIIRTKVINRGSMQVNKMHRQSSELVKAGTQAELIKAIEN--MLTREEHA 90
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
V + G+N SA + + A Y A+ +E L G+L+L NRL ++S+
Sbjct: 91 VFKRGRNAKSAT--SAKNASVIDYRMATGMEALVGWLFLRQEYNRLVYLISQ 140
>gi|238923820|ref|YP_002937336.1| possible ribonuclease III [Eubacterium rectale ATCC 33656]
gi|238875495|gb|ACR75202.1| possible ribonuclease III [Eubacterium rectale ATCC 33656]
gi|291524577|emb|CBK90164.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
DSM 17629]
gi|291528004|emb|CBK93590.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
M104/1]
Length = 142
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD I+++ R + + +V+ TQ +++ LL +L+ EE
Sbjct: 25 TLAYIGDGIFDIVIRSVVVGKGNTKANLLHKHTSNIVKAHTQALMIEALL--PHLTEEES 82
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
DV G+N S + + A A Y +A+ LE + GYLYL + ++KLG
Sbjct: 83 DVYHRGRNAKSPSM--AKNATMADYRKATGLEAVMGYLYLKDDFERVVSLTKLG 134
>gi|339448576|ref|ZP_08652132.1| ribonuclease III [Lactobacillus fructivorans KCTC 3543]
Length = 141
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP----PLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
N LAY+GD +YE+Y RRH + P ++ + + V + Q L+ + D
Sbjct: 13 LNGIVLAYLGDAVYEVYIRRHLIDEGVARPNQLQRFATK---YVSAKAQAGLIDLMKQDG 69
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
LS EE + G+N S + Y ++ E L G+L L+ ++ D ++K
Sbjct: 70 ILSDEEAYFFKRGRNAKSYT--HAKNTSVVTYRISTGFEALFGFLSLSGQDKRLDELAK 126
>gi|222099912|ref|YP_002534480.1| Ribonuclease III [Thermotoga neapolitana DSM 4359]
gi|221572302|gb|ACM23114.1| Ribonuclease III [Thermotoga neapolitana DSM 4359]
Length = 155
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
+A LAY+GD + EL R F I + RV Q +L+ L N L+ EE
Sbjct: 16 SAVLAYVGDAVLELVFRLKFA-GNYKISTIHERVKEWTSKHGQARMLESLWN--LLTEEE 72
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
R+VV+ N +A KR +Y +++ E L GYL+L + R++ +++
Sbjct: 73 REVVKRAMNSKAA----KRYGNDPLYRKSTGFEALVGYLFLKRDFQRIQQLLA 121
>gi|422340224|ref|ZP_16421177.1| putative RNase3 domain protein [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355369875|gb|EHG17265.1| putative RNase3 domain protein [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 129
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD ++EL R+++L +I N V A V + Q + +K++ D
Sbjct: 13 YSGLELAFLGDAVWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIED---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIVGAMYL 111
>gi|365851758|ref|ZP_09392178.1| RNase3 domain protein [Lactobacillus parafarraginis F0439]
gi|363716137|gb|EHL99553.1| RNase3 domain protein [Lactobacillus parafarraginis F0439]
Length = 136
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE++ RRH + ++ + V + Q AL++ + N LS
Sbjct: 8 LNGIALAYMGDAAYEVFIRRHLIEHGIAKPTRLQHVATKYVSAKAQAALIELMANADLLS 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E D + G+N S +T K Y ++ E + GYL L++ N R++++
Sbjct: 68 NTEWDYFKRGRNAKS-HTHAK-NTDVITYRISTGFEAVFGYLCLSDQNDRMKEI 119
>gi|392969840|ref|ZP_10335252.1| ribonuclease III family protein [Staphylococcus equorum subsp.
equorum Mu2]
gi|403047547|ref|ZP_10903015.1| hypothetical protein SOJ_26240 [Staphylococcus sp. OJ82]
gi|392512128|emb|CCI58448.1| ribonuclease III family protein [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763081|gb|EJX17175.1| hypothetical protein SOJ_26240 [Staphylococcus sp. OJ82]
Length = 128
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA----VVRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ NR+ V ++Q L+ L+ +
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLKAKPNRLHQEAKRYVSAKSQAETLEFLMEN 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
++ + E+D+VR G+N S T+ K Y ++S LE + G+LYL
Sbjct: 62 NWFTESEQDIVRRGRNAKSY-TKAK-NTDIQTYRKSSGLEAVIGFLYL 107
>gi|427414124|ref|ZP_18904314.1| hypothetical protein HMPREF9282_01721 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714500|gb|EKU77503.1| hypothetical protein HMPREF9282_01721 [Veillonella ratti
ACS-216-V-Col6b]
Length = 120
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +Y LY R ++ ++ +N V + + Q +L YL+ E+
Sbjct: 2 LAYIGDAVYSLYIRERMTEAGITKVQVLHNLVTECICAKAQSKVLHAWETTEYLTEMEKQ 61
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
V + +N +N + A Y +++ E + GYLY + A RL+ +M
Sbjct: 62 VAKRARN---SNVHVPKSATVQEYRASTAFEAVLGYLYRSGQAERLQILM 108
>gi|417874908|ref|ZP_12519739.1| hypothetical protein ABNIH2_12745, partial [Acinetobacter baumannii
ABNIH2]
gi|342227231|gb|EGT92168.1| hypothetical protein ABNIH2_12745 [Acinetobacter baumannii ABNIH2]
Length = 116
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV----VRCETQDALLQKLLND 171
+ N +LAY+GD + + + R + + L ++ +R+ V V ++Q L+ LL
Sbjct: 5 LLNPLTLAYMGDAVLDQHVREYIV---LKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLGI 61
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLED 227
+ + EE V++ G+N A + TK + Y ++S+LE + G+LYL + + RLE+
Sbjct: 62 DWFTEEELSVLKRGRN---AKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLEN 116
>gi|303231511|ref|ZP_07318241.1| RNase3 domain protein [Veillonella atypica ACS-049-V-Sch6]
gi|302513854|gb|EFL55866.1| RNase3 domain protein [Veillonella atypica ACS-049-V-Sch6]
Length = 161
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+A LAYIGD +Y +Y R+ + +S ++ + V + ++Q +L++L +S +
Sbjct: 39 DAVMLAYIGDAVYSMYIRQRIVEMSISKVQILHTLVTEFICAKSQSKVLEQL--ESMFTE 96
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+E+ + R +N +N + + Y +++ E + G+LY T +RL ++M +
Sbjct: 97 DEQTIARRARN---SNVNVPKSSSVREYRNSTAFEAVLGFLYETGQQDRLNELMKE 149
>gi|421527535|ref|ZP_15974135.1| hypothetical protein B437_10635 [Fusobacterium nucleatum ChDC F128]
gi|402256313|gb|EJU06795.1| hypothetical protein B437_10635 [Fusobacterium nucleatum ChDC F128]
Length = 129
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD ++EL R+++L +I N V A V + Q + +K++ D
Sbjct: 13 YSGLELAFLGDAVWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIED---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|254302120|ref|ZP_04969478.1| hypothetical protein FNP_2168 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322312|gb|EDK87562.1| hypothetical protein FNP_2168 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 129
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD ++EL R+++L +I N V A V + Q + +K++ D
Sbjct: 13 YSGLELAFLGDAVWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIED---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|225568315|ref|ZP_03777340.1| hypothetical protein CLOHYLEM_04390 [Clostridium hylemonae DSM
15053]
gi|225162844|gb|EEG75463.1| hypothetical protein CLOHYLEM_04390 [Clostridium hylemonae DSM
15053]
Length = 149
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-------MAVVRCETQDALLQKLLNDSY 173
+LAYIGD IY+L + L + E N +V A V+ Q +++ L
Sbjct: 31 TLAYIGDSIYDL------MIKSLVVNEGNRQVNKLHKETSAFVQASAQSQMMRTL--QGQ 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
L+ EE V R G+N S + + Y RA+ E L GYLYL + R+ D++ KL
Sbjct: 83 LTEEEHAVYRRGRNAKSVSP--AKNQSLTDYRRATGFEALMGYLYLRRDYKRMLDLV-KL 139
Query: 233 GF 234
G
Sbjct: 140 GL 141
>gi|375084699|ref|ZP_09731559.1| hypothetical protein HMPREF9454_00170 [Megamonas funiformis YIT
11815]
gi|291533967|emb|CBL07080.1| Uncharacterized protein conserved in bacteria [Megamonas
hypermegale ART12/1]
gi|374567946|gb|EHR39144.1| hypothetical protein HMPREF9454_00170 [Megamonas funiformis YIT
11815]
Length = 158
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD Y LY R L F + N+ M +V Q + + +D L+ +E
Sbjct: 39 LAYVGDAYYHLYIRTRLLNFEQSRVHLLNDFSMKLVSATLQAQAYKAIKDD--LTEDEAY 96
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
V + GKN A + R A Y+ ++ E + GYLYL + RL+++ K
Sbjct: 97 VFKRGKN---AKSHAPRVASVHDYHISTGFEAVLGYLYLNKDFTRLDELCEK 145
>gi|289766104|ref|ZP_06525482.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|289717659|gb|EFD81671.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 129
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V + V + Q + +K+++D
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNRYVKSKVNAKYQSLIYKKIIDD---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|237743812|ref|ZP_04574293.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|260495811|ref|ZP_05815932.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|336400043|ref|ZP_08580831.1| hypothetical protein HMPREF0404_00122 [Fusobacterium sp. 21_1A]
gi|336419164|ref|ZP_08599430.1| putative RNase3 domain protein [Fusobacterium sp. 11_3_2]
gi|423138023|ref|ZP_17125666.1| hypothetical protein HMPREF9942_01804 [Fusobacterium nucleatum
subsp. animalis F0419]
gi|229432843|gb|EEO43055.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|260196658|gb|EEW94184.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|336163240|gb|EGN66172.1| hypothetical protein HMPREF0404_00122 [Fusobacterium sp. 21_1A]
gi|336163855|gb|EGN66769.1| putative RNase3 domain protein [Fusobacterium sp. 11_3_2]
gi|371958585|gb|EHO76294.1| hypothetical protein HMPREF9942_01804 [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 129
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V + V + Q + +K+++D
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNRYVKSKVNAKYQSLIYKKIIDD---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|373106798|ref|ZP_09521098.1| hypothetical protein HMPREF9623_00762 [Stomatobaculum longum]
gi|371651737|gb|EHO17163.1| hypothetical protein HMPREF9623_00762 [Stomatobaculum longum]
Length = 141
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +YELY R L + + + + V+ ETQ L + L + L+ EE
Sbjct: 16 LAYLGDAVYELYIRERILDRGNQPVNRMHGQTVHYVKAETQAKLARYL--EPGLTGEESS 73
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
V R G+N ANT K A Y A++ E L GY L+ R D++
Sbjct: 74 VFRRGRNA-HANTMAK-NASMIDYRFATAFEALVGYWRLSGKEERFRDLVG 122
>gi|390629509|ref|ZP_10257503.1| Cysteine-tRNA ligase [Weissella confusa LBAE C39-2]
gi|390485145|emb|CCF29851.1| Cysteine-tRNA ligase [Weissella confusa LBAE C39-2]
Length = 141
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-----IEEYNNRVMAVVRCETQDALLQKLLND 171
N LAY GD +YE+Y R+H L ++ E N V A AL + D
Sbjct: 10 LNGLDLAYYGDAVYEVYIRQHLLAKGITKPARLQRESKNYVSAKAHA----ALFALMETD 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
L+ EE + G+N AN+ TK + Y ++ E L GYL ++ RL++++
Sbjct: 66 DLLTEEEMAYFKRGRN---ANSHTKAKNTDVVTYRISTGFEALIGYLAASDQQARLDEII 122
Query: 230 S 230
+
Sbjct: 123 A 123
>gi|313900604|ref|ZP_07834097.1| RNase3 domain protein [Clostridium sp. HGF2]
gi|346315558|ref|ZP_08857071.1| hypothetical protein HMPREF9022_02728 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373124519|ref|ZP_09538360.1| hypothetical protein HMPREF0982_03289 [Erysipelotrichaceae
bacterium 21_3]
gi|422326477|ref|ZP_16407505.1| hypothetical protein HMPREF0981_00825 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954666|gb|EFR36341.1| RNase3 domain protein [Clostridium sp. HGF2]
gi|345904534|gb|EGX74281.1| hypothetical protein HMPREF9022_02728 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371659487|gb|EHO24752.1| hypothetical protein HMPREF0982_03289 [Erysipelotrichaceae
bacterium 21_3]
gi|371666056|gb|EHO31213.1| hypothetical protein HMPREF0981_00825 [Erysipelotrichaceae
bacterium 6_1_45]
Length = 128
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEE-YNNRVMAVVRCETQDALLQKLLNDSYLS 175
+N SLAY+GD + L R L + + + V + Q L +L ++ S
Sbjct: 6 YNGTSLAYMGDAVMSLLVREMLLAQGWQKSKILQKKSESWVSAKAQAYFLIQLKERAFFS 65
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
EE +V G+N SA+ + A Y ++ LE L G+LYLT+ +RL+ + ++
Sbjct: 66 EEEYAIVLRGRNTHSAS--KAKNADVTTYRMSTGLEALFGWLYLTHQEDRLKALWEEI 121
>gi|168181843|ref|ZP_02616507.1| RNase3 domain protein [Clostridium botulinum Bf]
gi|237796963|ref|YP_002864515.1| RNase3 domain-containing protein [Clostridium botulinum Ba4 str.
657]
gi|182674865|gb|EDT86826.1| RNase3 domain protein [Clostridium botulinum Bf]
gi|229262159|gb|ACQ53192.1| RNase3 domain protein [Clostridium botulinum Ba4 str. 657]
Length = 146
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGKTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+ RL
Sbjct: 72 MAD--LNEDEIYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITDQQERLNY 127
Query: 228 VMSKLGFTNGSSTQM 242
+++K+ NG +
Sbjct: 128 LLNKIVTLNGKKGAL 142
>gi|238019167|ref|ZP_04599593.1| hypothetical protein VEIDISOL_01030 [Veillonella dispar ATCC 17748]
gi|416999161|ref|ZP_11939830.1| RNase3 domain protein [Veillonella parvula ACS-068-V-Sch12]
gi|237863866|gb|EEP65156.1| hypothetical protein VEIDISOL_01030 [Veillonella dispar ATCC 17748]
gi|333977314|gb|EGL78173.1| RNase3 domain protein [Veillonella parvula ACS-068-V-Sch12]
Length = 158
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
+A LAYIGD +Y +Y R + +S + + ++ C A + + D++ + +
Sbjct: 39 DAVMLAYIGDAVYSMYVRERVVQMNISKVQVLHTIVTEFICAKSQAKVLLEIEDAF-TEQ 97
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E+ + R +N +N + + Y +++ E + G+LY T + RL+DVM +
Sbjct: 98 EQAIARRARN---SNVNVPKSSSVQEYRSSTAFEAVLGFLYETRQDERLQDVMKQ 149
>gi|42518494|ref|NP_964424.1| hypothetical protein LJ0401 [Lactobacillus johnsonii NCC 533]
gi|227888794|ref|ZP_04006599.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|385825321|ref|YP_005861663.1| ribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|417836942|ref|ZP_12483182.1| ribonuclease III family protein [Lactobacillus johnsonii pf01]
gi|41582779|gb|AAS08390.1| hypothetical protein LJ_0401 [Lactobacillus johnsonii NCC 533]
gi|227850631|gb|EEJ60717.1| ribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|329666765|gb|AEB92713.1| ribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|338762621|gb|EGP13888.1| ribonuclease III family protein [Lactobacillus johnsonii pf01]
Length = 147
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q AL+ K+ + L
Sbjct: 21 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAALITKMQDLEMLDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
+E + G+N S +T K + Y ++ E + GYL L D ++K
Sbjct: 78 DELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDLLGKKERVDELAK 130
>gi|153940041|ref|YP_001392855.1| RNase3 domain-containing protein [Clostridium botulinum F str.
Langeland]
gi|170761351|ref|YP_001788842.1| RNase3 domain-containing protein [Clostridium botulinum A3 str.
Loch Maree]
gi|384463816|ref|YP_005676411.1| RNase3 domain-containing protein [Clostridium botulinum F str.
230613]
gi|152935937|gb|ABS41435.1| RNase3 domain protein [Clostridium botulinum F str. Langeland]
gi|169408340|gb|ACA56751.1| RNase3 domain protein [Clostridium botulinum A3 str. Loch Maree]
gi|295320833|gb|ADG01211.1| RNase3 domain protein [Clostridium botulinum F str. 230613]
Length = 146
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGKTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+ RL
Sbjct: 72 MAD--LNEDEIYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITDQQERLNY 127
Query: 228 VMSKLGFTNGSSTQM 242
+++K+ NG +
Sbjct: 128 LLNKIVTLNGKKGAL 142
>gi|288554705|ref|YP_003426640.1| RNAse III [Bacillus pseudofirmus OF4]
gi|288545865|gb|ADC49748.1| RNAse III [Bacillus pseudofirmus OF4]
Length = 135
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA--VVRCETQDALLQKLLNDSYL 174
NA +LAY+GD + ++Y R++L + + V A V + Q ++ LL++ +
Sbjct: 13 LNALALAYMGDSVLDMYI-RYYLIAQGKVRPHRLHVEATRFVSAKAQAKVVYSLLDEEFF 71
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
+ EE V++ G+N S + + A Y ++ E + GYLYL N RL+ VM K+
Sbjct: 72 TTEEEAVLKRGRNAKSGS--IPKNTDANTYRYSTGFEAVLGYLYLQGENARLDQVMEKV 128
>gi|392958565|ref|ZP_10324074.1| hypothetical protein A374_17509 [Bacillus macauensis ZFHKF-1]
gi|391875466|gb|EIT84077.1| hypothetical protein A374_17509 [Bacillus macauensis ZFHKF-1]
Length = 134
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAV----VRCETQDALLQKL 168
+ +LAY+GD + E + R H + P NR+ + V + Q A++++L
Sbjct: 13 LSGMTLAYMGDAVLETFVRHHLISSGQVKP-------NRLHTLATQYVSAKAQAAVVRRL 65
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLED 227
L++ + EE V+ G+N + + Y A++ E + GY + L N RL+
Sbjct: 66 LDEQFFDEEEVAVIMRGRNAKQGS--IPKNTDLQTYRYATAFEAIIGYHHLLENEERLQI 123
Query: 228 VMSKL 232
+ K+
Sbjct: 124 IFEKI 128
>gi|154485050|ref|ZP_02027498.1| hypothetical protein EUBVEN_02771 [Eubacterium ventriosum ATCC
27560]
gi|149734003|gb|EDM50122.1| RNase3 domain protein [Eubacterium ventriosum ATCC 27560]
Length = 155
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQKLLNDSY 173
+LAYIGD IYE+ R + +++ N +V + V+ TQ ++ +++
Sbjct: 35 TLAYIGDGIYEIVIR------TIIVDQANRQVNKIHKAASNLVKAHTQAEMIFAIMDK-- 86
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLG 233
L+ +E + + G+N A TR K A + Y A+ E L G+LYLTN + ++ K G
Sbjct: 87 LTEQELAIYKRGRN-AKAVTRAKN-ASMSDYRTATGFEALMGWLYLTNKSERMMLLIKEG 144
Query: 234 FT 235
+
Sbjct: 145 LS 146
>gi|293375372|ref|ZP_06621653.1| RNase3 domain protein [Turicibacter sanguinis PC909]
gi|325844439|ref|ZP_08168166.1| RNase3 domain protein [Turicibacter sp. HGF1]
gi|292645925|gb|EFF63954.1| RNase3 domain protein [Turicibacter sanguinis PC909]
gi|325489113|gb|EGC91497.1| RNase3 domain protein [Turicibacter sp. HGF1]
Length = 130
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ LA++GD Y+L R ++ + + V Q L L+ +L+
Sbjct: 6 MNSTMLAFVGDSYYDLKIREMLCKSGVNKPNRLHQLAVKYVSAHAQATTLAYLIEIEFLT 65
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK-LG 233
+E +VV+ G+N S + + Y +++ E L GYLYLT +RL+ ++SK +
Sbjct: 66 EKELEVVKKGRNTKSRSV--PKNTDVLTYAHSTAFEALIGYLYLTEQFDRLDAIVSKSIE 123
Query: 234 FTNG 237
+ NG
Sbjct: 124 YKNG 127
>gi|268318913|ref|YP_003292569.1| hypothetical protein FI9785_419 [Lactobacillus johnsonii FI9785]
gi|262397288|emb|CAX66302.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
Length = 147
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q AL+ K+ + L
Sbjct: 21 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAALITKMQDLEMLDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231
+E + G+N S +T K + Y ++ E + GYL L D ++K
Sbjct: 78 DELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDLLGKKERIDELAK 130
>gi|154502842|ref|ZP_02039902.1| hypothetical protein RUMGNA_00657 [Ruminococcus gnavus ATCC 29149]
gi|336431207|ref|ZP_08611061.1| hypothetical protein HMPREF0991_00180 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153796725|gb|EDN79145.1| RNase3 domain protein [Ruminococcus gnavus ATCC 29149]
gi|336020129|gb|EGN49846.1| hypothetical protein HMPREF0991_00180 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 155
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQK 167
S ++ LAYIGDC+Y+L + + I + N +V + V+ Q +++
Sbjct: 25 SAYSPLVLAYIGDCVYDL------IIKSMVINQGNRQVQKLHRETSGYVQASAQSFMMRA 78
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+ +L+ EE V + G+N S + + Y RA+ E L GYLYL
Sbjct: 79 M--QEHLTEEEHAVYKRGRNAKSIS--PAKNQSITDYRRATGFEALVGYLYL 126
>gi|303228964|ref|ZP_07315774.1| RNase3 domain protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516378|gb|EFL58310.1| RNase3 domain protein [Veillonella atypica ACS-134-V-Col7a]
Length = 140
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 104 LPNPPKVGKPRSVF---NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCE 159
+ + V KP S +A LAYIGD +Y +Y R+ + +S ++ + V + +
Sbjct: 1 MEDHSFVSKPASEVLASDAVMLAYIGDAVYSMYIRQRVVEMSISKVQVLHTLVTEFICAK 60
Query: 160 TQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+Q +L +L +S L+ E+ + R +N +N + + Y +++ E + G+LY
Sbjct: 61 SQSKVLDQL--ESVLTENEQIIARRARN---SNVNVPKSSSVREYRNSTAFEAVLGFLYE 115
Query: 220 T-NANRLEDVMSK 231
T +RL ++M +
Sbjct: 116 TGQQDRLNELMKE 128
>gi|307243418|ref|ZP_07525575.1| RNase3 domain protein [Peptostreptococcus stomatis DSM 17678]
gi|306493228|gb|EFM65224.1| RNase3 domain protein [Peptostreptococcus stomatis DSM 17678]
Length = 150
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSYLSAEE 178
+LAY+GD +YE Y R + + + ++ N MA+ VR ++Q ++ + + L +E
Sbjct: 23 TLAYLGDTVYESYIREYLIKKNVFLKINNLHKMAIIYVRAKSQAKAIKGI--EGILKEDE 80
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
V + +N NT K A Y ++ E + GYLYL + +RL+ ++S
Sbjct: 81 LSVFKRARN-HKKNTSAK-NASMIDYKHSTGFEAVVGYLYLKGDRDRLDHIIS 131
>gi|373468292|ref|ZP_09559549.1| RNase3 domain protein [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371766383|gb|EHO54638.1| RNase3 domain protein [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 125
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R + + + N ++V+ Q ++ KL++D LS EE
Sbjct: 3 LAYIGDAVYELIVRSILVSMGNRPVNKLNKDATSLVKAGAQSEIV-KLISDK-LSEEEYT 60
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
V + G+N S +T K A Y A+ E L G+LYL N
Sbjct: 61 VFKRGRN-SSPHTMAK-NASMTDYKYATGFEALIGFLYLDN 99
>gi|429759536|ref|ZP_19292034.1| RNase3 domain protein [Veillonella atypica KON]
gi|429179497|gb|EKY20744.1| RNase3 domain protein [Veillonella atypica KON]
Length = 161
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 110 VGKPRSVF---NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALL 165
V KP S +A LAYIGD +Y +Y R+ + +S ++ + V + ++Q +L
Sbjct: 28 VSKPASEVLASDAVMLAYIGDAVYSMYIRQRVVEMSISKVQVLHTLVTEFICAKSQSKVL 87
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANR 224
+L +S L+ E+ + R +N +N + + Y +++ E + G+LY T +R
Sbjct: 88 DQL--ESVLTENEQIIARRARN---SNVNVPKSSSVREYRNSTAFEAVLGFLYETGQQDR 142
Query: 225 LEDVMSK 231
L ++M +
Sbjct: 143 LNELMKE 149
>gi|256848163|ref|ZP_05553607.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715223|gb|EEU30200.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 137
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ R H L ++ + A V + Q L++ + S L+
Sbjct: 9 LNGIALAYLGDAVYEVTVREHLLNLGMTKPNRLQRKATAYVSAKAQAGLIKLMEEQSLLT 68
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
EE + + G+N AN+ T + Y ++ E L GYL L+
Sbjct: 69 DEEWEFFKRGRN---ANSYTHAKHTSVLTYRISTGFEALMGYLQLSG 112
>gi|87302223|ref|ZP_01085048.1| hypothetical protein WH5701_08479 [Synechococcus sp. WH 5701]
gi|87283148|gb|EAQ75104.1| hypothetical protein WH5701_08479 [Synechococcus sp. WH 5701]
Length = 140
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 105 PNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDAL 164
P+P +P ++ A LA++GD ++EL+ R +E + V+A VR + Q
Sbjct: 6 PDPRHRHQPETL-GALQLAWLGDAVWELHQRLRHCHQAGRPDELHQAVVARVRAQAQAQA 64
Query: 165 LQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
LQ L + L ER++V + + R R A Y RA+ ET+ G+L+L N R
Sbjct: 65 LQCL--EPLLDERERELV---RRGRNRAGRGPRGGDPASYGRATGFETMVGWLFLRNPER 119
Query: 225 LEDVMSKLGFTNGSS 239
L ++ L T+ S
Sbjct: 120 LAQLLDHLDETDLSD 134
>gi|168206820|ref|ZP_02632825.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
gi|169344119|ref|ZP_02865102.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|422347490|ref|ZP_16428402.1| hypothetical protein HMPREF9476_02475 [Clostridium perfringens
WAL-14572]
gi|169297730|gb|EDS79829.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|170661757|gb|EDT14440.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
gi|373223944|gb|EHP46285.1| hypothetical protein HMPREF9476_02475 [Clostridium perfringens
WAL-14572]
Length = 136
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L + + V A+ V+ + Q ++ L ++
Sbjct: 16 MLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINALEDE-- 73
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E + + G+N SA + A Y A+ E L GYLYLT RL + + K
Sbjct: 74 LKEDELYIYKRGRNAKSAT--VPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLK 130
>gi|150019964|ref|YP_001305318.1| ribonuclease III [Thermosipho melanesiensis BI429]
gi|149792485|gb|ABR29933.1| ribonuclease III [Thermosipho melanesiensis BI429]
Length = 126
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
SLAYIGD ++ LY + ++ F S+ + + ++V + Q LL K+L + EE
Sbjct: 20 SLAYIGDAVFNLYVKLYY-FKKTSVRKLHKNTHSIVNRDHQALLLDKILPLL--TEEEFS 76
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
V+ G N A + Y +++ E L G+LYL N +RL ++++++
Sbjct: 77 YVKRGINSKGAG----KYGNDPAYRKSTGFEVLIGFLYLKNEDRLYNLLTEV 124
>gi|291563602|emb|CBL42418.1| Uncharacterized protein conserved in bacteria [butyrate-producing
bacterium SS3/4]
Length = 158
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +YE+ R + + + + + + A+V+ Q L + +D L+ EE
Sbjct: 27 LAYLGDAVYEILIRTIVVSEGNMQVNKLHKKSSALVKAAAQAEFLMAIEDD--LTEEEHA 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV----MSKLGFT 235
V + G+N S + + A Y A+ E L GYLYL+ R+ D+ M+K G
Sbjct: 85 VYKRGRNAKSFS--MAKNATMKDYRMATGFEALMGYLYLSGRTERMVDLVALAMTKTGKA 142
Query: 236 NGSSTQMILEE 246
+ + EE
Sbjct: 143 DSGDAEKQKEE 153
>gi|309777272|ref|ZP_07672234.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
gi|308914952|gb|EFP60730.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
Length = 128
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEE-YNNRVMAVVRCETQDALLQKLLNDSYLS 175
+N SLAY+GD + L R L + + + V + Q L +L + S
Sbjct: 6 YNGTSLAYMGDAVMSLLVREMLLAQGWQKSKILQKKSESWVSAKAQAYFLIQLKEREFFS 65
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
EE +V G+N SA+ + A Y ++ LE L G+LYLT+ RL+ + ++
Sbjct: 66 EEEYAIVLRGRNTHSAS--KAKNADVTTYRMSTGLEALFGWLYLTHQEARLQALWEEI 121
>gi|220930945|ref|YP_002507853.1| ribonuclease III [Halothermothrix orenii H 168]
gi|219992255|gb|ACL68858.1| ribonuclease III [Halothermothrix orenii H 168]
Length = 128
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
LAY+GD +YEL R + + + + + + + +V Q L+ + + L +E
Sbjct: 11 GHLAYVGDSVYELLVRNYLVNQGIYPLNKVHKNAVRLVNAAAQARGLRAI--EDKLEDKE 68
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
+ +VR G+N S + + R A Y ++ LE L GYLYL N +R++++ S L
Sbjct: 69 KAIVRRGRNFNSGS--SPRNMKIADYRLSTGLEALFGYLYLNGNYDRIKELWSLL 121
>gi|18311408|ref|NP_563342.1| hypothetical protein CPE2426 [Clostridium perfringens str. 13]
gi|168214715|ref|ZP_02640340.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
gi|182626986|ref|ZP_02954716.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gi|422875371|ref|ZP_16921856.1| hypothetical protein HA1_14162 [Clostridium perfringens F262]
gi|18146092|dbj|BAB82132.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|170713831|gb|EDT26013.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
gi|177907656|gb|EDT70280.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gi|380303640|gb|EIA15939.1| hypothetical protein HA1_14162 [Clostridium perfringens F262]
Length = 136
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L + + V A+ V+ + Q ++ L +
Sbjct: 16 MLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINAL--EGE 73
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E + + G+N SA + A Y A+ E L GYLYLT RL + + K
Sbjct: 74 LKEDELYIYKRGRNAKSAT--VPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLK 130
>gi|384049288|ref|YP_005497305.1| Ribonuclease III [Bacillus megaterium WSH-002]
gi|345446979|gb|AEN91996.1| Ribonuclease III [Bacillus megaterium WSH-002]
Length = 141
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +++L+ RRH L + + +N+ V + Q ++ N+++ +
Sbjct: 11 LNSLALAYMGDAVFDLHVRRHLLVLGTVRPNQLHNKAKKYVSAKAQAQIVYYFKNENFFT 70
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE V+R G+N S + Y +++ E + GYLYL RL ++++K
Sbjct: 71 EEEEGVLRRGRNAKSGT--VPKNTDVQTYRYSTAFEAVVGYLYLLGEEERLMELITK 125
>gi|325661899|ref|ZP_08150520.1| hypothetical protein HMPREF0490_01258 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331085694|ref|ZP_08334777.1| hypothetical protein HMPREF0987_01080 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471877|gb|EGC75094.1| hypothetical protein HMPREF0490_01258 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406617|gb|EGG86122.1| hypothetical protein HMPREF0987_01080 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 152
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM-------AVVRCETQDALLQKLLNDSY 173
+LAYIGD IY+L + + I E N +V A+V+ Q +++ L
Sbjct: 31 TLAYIGDSIYDL------IIKTIVINEGNKQVQKLHKETSALVQASAQSKMMRTL--QGV 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSKL 232
L+ EE V + G+N S + + Y RA+ E L GYLYL N R+ +++ +L
Sbjct: 83 LTQEELAVYKRGRN--SKSVSPAKNQSVTDYRRATGFEALMGYLYLEKNWTRMVELI-RL 139
Query: 233 GF 234
G
Sbjct: 140 GL 141
>gi|417937820|ref|ZP_12581120.1| RNase3 domain protein [Streptococcus infantis SK970]
gi|343392084|gb|EGV04657.1| RNase3 domain protein [Streptococcus infantis SK970]
Length = 128
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLISLMLEEEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLETLIS 120
>gi|168211252|ref|ZP_02636877.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
gi|261876165|ref|YP_697115.2| hypothetical protein CPF_2736 [Clostridium perfringens ATCC 13124]
gi|170710747|gb|EDT22929.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
gi|255529902|gb|ABG82706.2| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
Length = 136
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L + + V A+ V+ + Q ++ L ++
Sbjct: 16 MLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINALEDE-- 73
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E + + G+N SA + A Y A+ E L GYLYLT RL + + K
Sbjct: 74 LREDELYIYKRGRNAKSAT--VPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLK 130
>gi|358466139|ref|ZP_09175994.1| RNase3 domain protein [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069342|gb|EHI79265.1| RNase3 domain protein [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 131
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ LA+IGD I+EL R+++L +I N V + V + Q + ++++ D
Sbjct: 15 YTGLELAFIGDAIWELEIRKYYLQFGYNIPTLNKYVKSKVNAKYQSLIYKQIIED---LD 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTN 221
EE V+ GK ++N +T + + Y A++LE + G +YL N
Sbjct: 72 EEFKVI--GKRAKNSNIKTFPKTCTVMEYREATALEAIIGAMYLLN 115
>gi|326790452|ref|YP_004308273.1| ribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541216|gb|ADZ83075.1| ribonuclease III [Clostridium lentocellum DSM 5427]
Length = 150
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 109 KVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQK 167
K+ + ++ +LAYIGD +YE++ R + + + + + + +V+ TQ L
Sbjct: 23 KMNHKANTYSPLALAYIGDGVYEIFIRTYVMNKGNAPVNKLHKASRELVKASTQAKLYYA 82
Query: 168 LLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+ + L+ EE+ V+R G+N S ++ G Y A+ +E L GYLY+
Sbjct: 83 I--EDILTEEEKAVLRRGRNAKSYSSPKNGDIGD--YRHATGVEALIGYLYI 130
>gi|295396933|ref|ZP_06807056.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563]
gi|294974826|gb|EFG50530.1| cysteine--tRNA ligase [Aerococcus viridans ATCC 11563]
Length = 145
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKL-LNDSYLSAEE 178
+LAY+GD +E+ R H + L+ ++ + V + Q L++ + + +L+ +E
Sbjct: 19 TLAYLGDASWEVVVRDHLVQSGLTKPKDLHKAATEFVSAKGQALLVEAMQAEEGFLTEDE 78
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDV 228
+ + G+N S ++ + A Y A+ E L G+ YL + NR +++
Sbjct: 79 MTIFKRGRNAKSHSS--AKNADIHTYRIATGFEALMGFAYLNDQNRFKEI 126
>gi|110801659|ref|YP_699684.1| hypothetical protein CPR_2422 [Clostridium perfringens SM101]
gi|110682160|gb|ABG85530.1| conserved hypothetical protein [Clostridium perfringens SM101]
Length = 136
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L + + V A+ V+ + Q ++ L +
Sbjct: 16 MLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINAL--EGE 73
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E + + G+N SA + A Y A+ E L GYLYLT RL + + K
Sbjct: 74 LREDELYIYKRGRNAKSAT--VPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLK 130
>gi|168217919|ref|ZP_02643544.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
gi|182380021|gb|EDT77500.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
Length = 136
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV--VRCETQDALLQKLLNDSY 173
+ N LA IGD +YE++ R + L + + V A+ V+ + Q ++ L +
Sbjct: 16 MLNPLQLALIGDGVYEVFIRNYILSENAGLSAHKIHVKAIQYVKAKAQSDIINAL--EGE 73
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L +E + + G+N SA + A Y A+ E L GYLYLT RL + + K
Sbjct: 74 LREDELYIYKRGRNAKSAT--VPKNANVRDYRNATGFEALVGYLYLTGKEERLNEFLLK 130
>gi|424739347|ref|ZP_18167766.1| hypothetical protein C518_3881 [Lysinibacillus fusiformis ZB2]
gi|422946744|gb|EKU41150.1| hypothetical protein C518_3881 [Lysinibacillus fusiformis ZB2]
Length = 146
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
A +LAY+GD + E R + L P ++ R V + Q ++ ++++++
Sbjct: 19 LKALALAYMGDAVLEQKVREYLLRSGRVKPNTLHREATRY---VSAKAQSMIVHRMIDEN 75
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
YL+ EE V R G+N S + + Y +S E + G LYL N
Sbjct: 76 YLTEEELAVFRRGRNAKSGS--VPKNTDVQTYRNSSGFEAVLGSLYLLN 122
>gi|366089457|ref|ZP_09455930.1| hypothetical protein LaciK1_05127 [Lactobacillus acidipiscis KCTC
13900]
Length = 137
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD ++E++ R H L L+ + + V + Q L+ ++ LS
Sbjct: 10 NGIALAYIGDAVWEVFVREHLLELGLTKPNKLQHTATHYVSAKAQAFLVDQMEQADKLSE 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
EE + G+N S +T K A Y ++ E L GYLY
Sbjct: 70 EEWLFFKKGRNAKS-HTSAKNTA-VMTYRISTGFEALFGYLY 109
>gi|340356800|ref|ZP_08679441.1| ribonuclease III [Sporosarcina newyorkensis 2681]
gi|339620138|gb|EGQ24709.1| ribonuclease III [Sporosarcina newyorkensis 2681]
Length = 139
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
NA +LAY+GD +YE R H L P + + R V + Q +++ +
Sbjct: 12 LNALALAYMGDAVYEQAVREHLLRSGRVKPQVLHKEATR---YVSAKAQAQIIRTMREQQ 68
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
L+ EE V+R G+N S + + YN +S+ E + GY+YL RL ++M+K
Sbjct: 69 LLTEEEEAVMRRGRNAKSGS--VPKNTDVTTYNYSSAFEAVLGYVYLLGRQERLTELMAK 126
>gi|325681496|ref|ZP_08161021.1| RNase3 domain protein [Ruminococcus albus 8]
gi|324106763|gb|EGC01054.1| RNase3 domain protein [Ruminococcus albus 8]
Length = 141
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LA++GD +YE R L + + + ++ V E Q ++ L + +E
Sbjct: 17 ALAFLGDSVYEQLVRERILLAANMPANKLHKLAVSRVCAEYQSECVEMLTEQGSFNEKEL 76
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
+V + G+N + + A Y A+ LE L G+LYLT N R+E++ K
Sbjct: 77 EVFKRGRNT---KVNAPKHSTIAQYRNATGLECLFGFLYLTAQNERIEELFEK 126
>gi|56751981|ref|YP_172682.1| hypothetical protein syc1972_d [Synechococcus elongatus PCC 6301]
gi|56686940|dbj|BAD80162.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 99
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 135 RRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTR 194
R L P + + V+ VR E Q LL LL +AEE ++VR G+N A R
Sbjct: 2 RLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLPLL--TAEELEIVRRGRN---AAGR 56
Query: 195 TKRRAGAAVYNRASSLETLAGYLYLTN 221
RR Y +A+ LETL GYLYL +
Sbjct: 57 VPRRLTGEYYQQATGLETLLGYLYLCD 83
>gi|331090784|ref|ZP_08339631.1| hypothetical protein HMPREF9477_00274 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330399892|gb|EGG79551.1| hypothetical protein HMPREF9477_00274 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 149
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVM-------AVVRCETQDALLQKLLNDSY 173
+LAYIGD IY+L + L I N +V ++V+ Q +++ + +
Sbjct: 31 TLAYIGDSIYDL------IIKSLVINRGNKQVQKLHKETSSLVQASAQSMMMRAMQEE-- 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
L+ EER V + G+N S + + Y RA+ E L GYLYL R+ D++ K+
Sbjct: 83 LTDEERAVYKRGRNAKSVSP--AKNQSITDYRRATGFEALIGYLYLQEKWKRMLDLV-KI 139
Query: 233 GF 234
G
Sbjct: 140 GL 141
>gi|187776556|ref|ZP_02993029.1| hypothetical protein CLOSPO_00068 [Clostridium sporogenes ATCC
15579]
gi|424827460|ref|ZP_18252264.1| RNase3 domain-containing protein [Clostridium sporogenes PA 3679]
gi|187775215|gb|EDU39017.1| RNase3 domain protein [Clostridium sporogenes ATCC 15579]
gi|365980074|gb|EHN16111.1| RNase3 domain-containing protein [Clostridium sporogenes PA 3679]
Length = 146
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGKTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+
Sbjct: 72 MGD--LNEDELYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITD 120
>gi|299541907|ref|ZP_07052230.1| hypothetical protein BFZC1_23194 [Lysinibacillus fusiformis ZC1]
gi|298725645|gb|EFI66286.1| hypothetical protein BFZC1_23194 [Lysinibacillus fusiformis ZC1]
Length = 139
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 117 FNAASLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS 172
A +LAY+GD + E R + L P ++ R V + Q ++ ++++++
Sbjct: 12 LKALALAYMGDAVLEQKVREYLLRSGRVKPNTLHREATRY---VSAKAQSMIVHRMIDEN 68
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
YL+ EE V R G+N S + + Y +S E + G LYL N
Sbjct: 69 YLTEEELAVFRRGRNAKSGS--VPKNTDVQTYRNSSGFEAVLGSLYLLN 115
>gi|153814445|ref|ZP_01967113.1| hypothetical protein RUMTOR_00657 [Ruminococcus torques ATCC 27756]
gi|317500159|ref|ZP_07958392.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331087614|ref|ZP_08336542.1| hypothetical protein HMPREF1025_00125 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438036|ref|ZP_08617678.1| hypothetical protein HMPREF0990_00072 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848841|gb|EDK25759.1| RNase3 domain protein [Ruminococcus torques ATCC 27756]
gi|316898448|gb|EFV20486.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330399793|gb|EGG79453.1| hypothetical protein HMPREF1025_00125 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336016480|gb|EGN46265.1| hypothetical protein HMPREF0990_00072 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 155
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 99 GYERWLPNPP--KVGKPRSVFNAASLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAV 155
G+E ++ P K P++ ++ LAYIGDC+++L + + + + +
Sbjct: 8 GFEYYMDLIPGMKQADPKAS-SSIVLAYIGDCVFDLIIKMRVVGRGGRQVHKLHEETSRY 66
Query: 156 VRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAG 215
V+ Q +++ + +L+ EE V R G+N S + + Y RA+ E L G
Sbjct: 67 VQASAQSFMMRAI--QEHLTEEEHAVYRRGRNTRSVSA--AKNQSITDYRRATGFEALVG 122
Query: 216 YLYL 219
YLYL
Sbjct: 123 YLYL 126
>gi|373465964|ref|ZP_09557390.1| RNase3 domain protein [Lactobacillus kisonensis F0435]
gi|371758223|gb|EHO46997.1| RNase3 domain protein [Lactobacillus kisonensis F0435]
Length = 136
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
S N +LAY+GD YE++ RRH + L+ + V + Q AL++ + D
Sbjct: 6 SQLNGIALAYMGDAAYEVFIRRHLIEQGLTRPTRLQHVATKYVSAKAQAALIELMQTDEL 65
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
L+ +E + G+N S +T K Y ++ E + GYL L++ +
Sbjct: 66 LNDDEWGYFKRGRNAKS-HTHAK-NTDVITYRISTGFEAVFGYLSLSDQTK 114
>gi|268607913|ref|ZP_06141644.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
Length = 142
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SLA++GD +Y+ R H L + + ++ + +V E Q L + +S E
Sbjct: 22 SLAFLGDSVYDTLVREHLLRQANMPAAKLHSAKIKLVCAEYQSDAYGVL--EENISEHEL 79
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
V++ G+N + NT + A AA Y RA+++E L GYL+LT
Sbjct: 80 AVLKRGRN-ATGNT-VPKHADAAQYRRATAVECLFGYLFLTG 119
>gi|237741372|ref|ZP_04571853.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256846543|ref|ZP_05552000.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|229430904|gb|EEO41116.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256718312|gb|EEU31868.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 129
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K+++
Sbjct: 13 YSGLELAFLGDVIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIDG---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE ++ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKII--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|294496963|ref|YP_003560663.1| ribonuclease for 23S RNA maturation [Bacillus megaterium QM B1551]
gi|295702330|ref|YP_003595405.1| ribonuclease for 23S RNA maturation [Bacillus megaterium DSM 319]
gi|294346900|gb|ADE67229.1| ribonuclease for 23S RNA maturation [Bacillus megaterium QM B1551]
gi|294799989|gb|ADF37055.1| ribonuclease for 23S RNA maturation [Bacillus megaterium DSM 319]
Length = 141
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +++L+ RRH L + + +N+ V + Q ++ N+++ +
Sbjct: 11 LNSLALAYMGDAVFDLHVRRHLLVLGTVRPNQLHNKAKKYVSAKAQAQIVYYFKNENFFT 70
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
EE V+R G+N S + Y +++ E + GYLYL R+ ++++K
Sbjct: 71 EEEEGVLRRGRNAKSGT--VPKNTDVQTYRYSTAFEAVVGYLYLLGEEERMMELITK 125
>gi|421144924|ref|ZP_15604826.1| hypothetical protein A447_03588 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488691|gb|EJG09544.1| hypothetical protein A447_03588 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 129
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K+++
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIDG---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE ++ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKII--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>gi|116333231|ref|YP_794758.1| ribonuclease III family protein [Lactobacillus brevis ATCC 367]
gi|116098578|gb|ABJ63727.1| Ribonuclease III family protein [Lactobacillus brevis ATCC 367]
Length = 135
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YE+ RRH + L+ + + V + Q AL+ + D LS
Sbjct: 9 LNGVALAYMGDAAYEVIIRRHLIAEGLAKPNHLQKTATHYVSAKAQAALINLMEQDEVLS 68
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR 224
E + + G+N S + Y ++ E L GYL L++ +
Sbjct: 69 EAEWTMFKRGRNAKSYT--HAKNTDVVTYRISTGFEALMGYLALSDQQK 115
>gi|226324506|ref|ZP_03800024.1| hypothetical protein COPCOM_02289 [Coprococcus comes ATCC 27758]
gi|225206954|gb|EEG89308.1| RNase3 domain protein [Coprococcus comes ATCC 27758]
Length = 137
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAYIGD IY+L + + +++ + ++V+ Q +++ L L+
Sbjct: 9 YSPLTLAYIGDSIYDLIIKTKVISEGNKQVKKLHQETSSMVQASAQSEMMRAL--QPLLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKLGF 234
EE V R G+N S + + Y RA+ E L G+LYL R+ D++ K+G
Sbjct: 67 EEEHAVYRRGRNAKSVS--PAKNQSLTDYRRATGFEALMGWLYLKREWKRMADLI-KIGL 123
Query: 235 TN 236
+
Sbjct: 124 DH 125
>gi|331003583|ref|ZP_08327080.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412424|gb|EGG91815.1| hypothetical protein HMPREF0491_01942 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 151
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
F+ LAYIGD +YEL R + + + N +V+ Q +++ L S LS
Sbjct: 22 FSPLVLAYIGDAVYELIIRSILVSGGNRPVNKLNKDATYLVKAGAQAQIIK--LITSELS 79
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
EE + + G+N S +T K A + Y A+ E+L GYLYL N
Sbjct: 80 EEEFIIFKRGRN-SSPHTMAKN-ASMSDYKHATGFESLIGYLYLNN 123
>gi|262067256|ref|ZP_06026868.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
33693]
gi|291379030|gb|EFE86548.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
33693]
Length = 131
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ LA+IGD I+EL R+++L +I N V + V Q + ++++ +
Sbjct: 15 YTGLELAFIGDAIWELEIRKYYLQFGYNIPTLNKHVKSKVNARYQSLIYKQIIEE---LD 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTN 221
EE V+ GK ++N +T + + Y A++LE + G +YL N
Sbjct: 72 EEFKVI--GKRAKNSNIKTFPKTCTVMEYKEATALEAVVGAMYLLN 115
>gi|310779626|ref|YP_003967959.1| ribonuclease III [Ilyobacter polytropus DSM 2926]
gi|380876942|sp|E3H9T2.1|MRNCL_ILYPC RecName: Full=Mini-ribonuclease 3-like protein
gi|309748949|gb|ADO83611.1| ribonuclease III [Ilyobacter polytropus DSM 2926]
Length = 127
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LAY+GD ++EL R +F+ I N +V +V + Q + + +L D L + + V
Sbjct: 14 LAYLGDAVWELTVREYFVEKGYKINTMNKKVKKLVNAKAQSVIFKSILED--LDEDYKAV 71
Query: 182 VRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
R KN +N ++ R+ + + Y A++ E L Y+
Sbjct: 72 ARRAKN---SNIKSFPRSCSIMEYREATAFEALIAAFYI 107
>gi|402834856|ref|ZP_10883448.1| ribonuclease III domain protein [Selenomonas sp. CM52]
gi|402277046|gb|EJU26140.1| ribonuclease III domain protein [Selenomonas sp. CM52]
Length = 172
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQ-KLLN--DSYLSAEE 178
LAYIGD + L+ R L S E+ V++ + A+ Q K + + L+ E
Sbjct: 39 LAYIGDAYFHLFVRTRLL----SFEQSQVHVLSDFAAQIVSAVWQAKAYHAIEERLTERE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDV 228
R + R G+N A + RRA A Y+ ++ E L G L+L + RL+++
Sbjct: 95 RGIFRRGRN---AKSHAPRRASVAEYHASTGFEALLGTLFLEKDTERLDEI 142
>gi|167758882|ref|ZP_02431009.1| hypothetical protein CLOSCI_01227 [Clostridium scindens ATCC 35704]
gi|336421766|ref|ZP_08601921.1| hypothetical protein HMPREF0993_01298 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663622|gb|EDS07752.1| RNase3 domain protein [Clostridium scindens ATCC 35704]
gi|336009615|gb|EGN39606.1| hypothetical protein HMPREF0993_01298 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 148
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQKLLNDSY 173
+LAYIGD IY+L + L + E N +V + V+ Q +++ + +
Sbjct: 31 TLAYIGDSIYDL------IIKSLVVNEGNRQVQKLHKETSMRVQASAQSKMMRAI--QEH 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
L+ EE V + G+N S + + Y RA+ E L GYLYL
Sbjct: 83 LTEEEHAVFKRGRNAKSVSP--AKNQSITDYRRATGFEALMGYLYL 126
>gi|291550110|emb|CBL26372.1| Uncharacterized protein conserved in bacteria [Ruminococcus torques
L2-14]
Length = 158
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 89 VVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLF----PPLS 144
+ A L+E Y R +P ++ + + LAY+GDC+Y+L + + P
Sbjct: 5 ITAGLEE----YIRTIPGMKEIDAKQC--SPLVLAYVGDCVYDLIIKTMVVGRGNRPVHR 58
Query: 145 IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVY 204
+ E ++ V+ Q +++ + +L+ EE V R G+N S + + Y
Sbjct: 59 LHEETSQ---YVQASAQSFMMRSM--QEHLNEEEHGVYRRGRNARSVS--PAKNQSITDY 111
Query: 205 NRASSLETLAGYLYLTNA-NRLEDVMS 230
RA+ E L G+LYLT RL +++S
Sbjct: 112 RRATGFEALIGHLYLTGQYERLTELVS 138
>gi|315301169|ref|ZP_07872436.1| cysteinyl-tRNA synthetase, partial [Listeria ivanovii FSL F6-596]
gi|313630461|gb|EFR98327.1| cysteinyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
Length = 92
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R H L + + + V + Q L+K++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREHLLATGKTKPNQLHKTATKFVSAKGQAVALKKMIANDFLT 69
Query: 176 AEERDVVRWGKNVGS 190
EE V + G+N S
Sbjct: 70 EEEAAVAKRGRNAKS 84
>gi|148381442|ref|YP_001255983.1| RNase3 domain-containing protein [Clostridium botulinum A str. ATCC
3502]
gi|153931318|ref|YP_001385817.1| RNase3 domain-containing protein [Clostridium botulinum A str. ATCC
19397]
gi|153934743|ref|YP_001389224.1| RNase3 domain-containing protein [Clostridium botulinum A str.
Hall]
gi|168178811|ref|ZP_02613475.1| RNase3 domain protein [Clostridium botulinum NCTC 2916]
gi|226950954|ref|YP_002806045.1| RNase3 domain-containing protein [Clostridium botulinum A2 str.
Kyoto]
gi|421838078|ref|ZP_16272065.1| RNase3 domain-containing protein [Clostridium botulinum
CFSAN001627]
gi|148290926|emb|CAL85062.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152927362|gb|ABS32862.1| RNase3 domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152930657|gb|ABS36156.1| RNase3 domain protein [Clostridium botulinum A str. Hall]
gi|182669923|gb|EDT81899.1| RNase3 domain protein [Clostridium botulinum NCTC 2916]
gi|226842077|gb|ACO84743.1| RNase3 domain protein [Clostridium botulinum A2 str. Kyoto]
gi|409739612|gb|EKN40246.1| RNase3 domain-containing protein [Clostridium botulinum
CFSAN001627]
Length = 146
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGKTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+ RL
Sbjct: 72 MAD--LNEDELYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITDQQERLNY 127
Query: 228 VMSKLGFTNG 237
+++ + NG
Sbjct: 128 LLNNIVTLNG 137
>gi|290968520|ref|ZP_06560059.1| RNase3 domain protein [Megasphaera genomosp. type_1 str. 28L]
gi|290781516|gb|EFD94105.1| RNase3 domain protein [Megasphaera genomosp. type_1 str. 28L]
Length = 158
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 87 QGVVANLDESYMGY--ERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLS 144
Q V A ++Y + R L PP + P + +A +LA++GD Y L+ RR L
Sbjct: 4 QQVQALKHKAYAAFVENRQLDVPPVL--PYHM-DAITLAFVGDAYYALFLRRR--LTALG 58
Query: 145 IEEYNNRVMAVVRCETQDALLQKLLN---DSYLSAEERDVVRWGKNVGSANTRTKRRAGA 201
I +V+ + E A Q + S+L+ E+ + R +N A ++ + A A
Sbjct: 59 IPAV--QVLHALAAEFVSAKCQSFVYTCLQSFLTEAEKSLCRRSRN---AYSQVPKSASA 113
Query: 202 AVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
A Y+ +++LE L GYL L RL+ VM +
Sbjct: 114 AEYHNSTALEALIGYLVLDGQEARLQAVMQHV 145
>gi|170755785|ref|YP_001783142.1| RNase3 domain-containing protein [Clostridium botulinum B1 str.
Okra]
gi|429246815|ref|ZP_19210111.1| RNase3 domain-containing protein [Clostridium botulinum
CFSAN001628]
gi|169120997|gb|ACA44833.1| RNase3 domain protein [Clostridium botulinum B1 str. Okra]
gi|428756149|gb|EKX78725.1| RNase3 domain-containing protein [Clostridium botulinum
CFSAN001628]
Length = 146
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGKTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+ RL
Sbjct: 72 MAD--LNEDEIYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITDQQERLNY 127
Query: 228 VMSKLGFTNG 237
+++ + NG
Sbjct: 128 LLNNIVTLNG 137
>gi|260887697|ref|ZP_05898960.1| RNase3 domain protein [Selenomonas sputigena ATCC 35185]
gi|330838630|ref|YP_004413210.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862577|gb|EEX77077.1| RNase3 domain protein [Selenomonas sputigena ATCC 35185]
gi|329746394|gb|AEB99750.1| ribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 172
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQ-KLLN--DSYLSAEE 178
LAYIGD + L+ R L S E+ V++ + A+ Q K + + L+ E
Sbjct: 39 LAYIGDAYFHLFVRTRLL----SFEQSQVHVLSDFAAQIVSAVWQAKAYHAIEERLTERE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDV 228
R + R G+N A + RRA A Y+ ++ E L G L+L + RL+++
Sbjct: 95 RGIFRRGRN---AKSHAPRRASVAEYHASTGFEALLGTLFLEKDTERLDEI 142
>gi|283795458|ref|ZP_06344611.1| RNase3 domain protein [Clostridium sp. M62/1]
gi|291077119|gb|EFE14483.1| RNase3 domain protein [Clostridium sp. M62/1]
gi|295091142|emb|CBK77249.1| Uncharacterized protein conserved in bacteria [Clostridium cf.
saccharolyticum K10]
Length = 147
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRV-------MAVVRCETQDALLQKLLNDSYL 174
LAY+GD +YEL R L + E N +V ++V+ Q L KL+ ++ L
Sbjct: 27 LAYLGDAVYELAIR------TLVVNEGNRQVNKMHRETASLVKAGAQAEFL-KLIEEA-L 78
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
+ EE V R G+N S + A Y A+ E L GYLYLT RL + LG
Sbjct: 79 TPEELSVYRRGRNAKSVTM--AKHATMKDYRMATGFEALMGYLYLT--GRLGRMAELLGM 134
>gi|403514368|ref|YP_006655188.1| hypothetical protein R0052_01890 [Lactobacillus helveticus R0052]
gi|403079806|gb|AFR21384.1| hypothetical protein R0052_01890 [Lactobacillus helveticus R0052]
Length = 146
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q L+ K+ ++ L+
Sbjct: 16 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAGLVTKMQDEERLT 75
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
EE R G+N A + TK + Y ++ E + GYL L N N R++++
Sbjct: 76 EEELTAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLNKNERVQEI 127
>gi|134298072|ref|YP_001111568.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|134050772|gb|ABO48743.1| ribonuclease III [Desulfotomaculum reducens MI-1]
Length = 144
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 122 LAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL RR+ + + + + + + VR Q L + L+ EE
Sbjct: 29 LAYIGDAVYELAVRRYLVTQGSVKVNQLHKGAVRYVRAGAQARAL--FALEEKLTEEETA 86
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
VVR G+N SA + A Y +A++LE L GYLYL
Sbjct: 87 VVRRGRNAKSAT--LPKNADIMEYRQATALEALIGYLYL 123
>gi|387819783|ref|YP_005680130.1| ribonuclease III family protein [Clostridium botulinum H04402 065]
gi|322807827|emb|CBZ05402.1| ribonuclease III family protein [Clostridium botulinum H04402 065]
Length = 146
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 112 KPRSVFNAASLAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKL 168
K N LA+IGD +YE++ R FL L++ + + + V+ Q ++ +
Sbjct: 13 KDGRTLNPLVLAFIGDAVYEVFIRT-FLVDNNRELNVHKLHVNAIKYVKAHGQSDCIKDI 71
Query: 169 LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
+ D L+ +E + + G+N S + A Y A+ E L G+LY+T+ RL
Sbjct: 72 MAD--LNEDELYIFKRGRNAKSGT--VPKNADVQEYRFATGFEALIGFLYITDQQERLNY 127
Query: 228 VMSKLGFTNG 237
+++ + NG
Sbjct: 128 LLNNIVTLNG 137
>gi|291542573|emb|CBL15683.1| Uncharacterized protein conserved in bacteria [Ruminococcus bromii
L2-63]
Length = 133
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LA++GD +Y+L R + + S+ E N +++V C++Q A K+L + L+ +E
Sbjct: 17 TLAFVGDGVYDLLVREYLVRKANRSVGELNKIKVSLVNCKSQ-AEFAKILMPT-LTEKEL 74
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
V + G+N +A T + A Y+ A+ LE L GYL +
Sbjct: 75 AVYKRGRN--AAPKCTPKNGSVADYHSATGLEALFGYLQI 112
>gi|260102408|ref|ZP_05752645.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|385813157|ref|YP_005849550.1| Ribonuclease III [Lactobacillus helveticus H10]
gi|417015237|ref|ZP_11946893.1| hypothetical protein AAULH_02038 [Lactobacillus helveticus MTCC
5463]
gi|260083776|gb|EEW67896.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|323465876|gb|ADX69563.1| Ribonuclease III [Lactobacillus helveticus H10]
gi|328462974|gb|EGF34782.1| hypothetical protein AAULH_02038 [Lactobacillus helveticus MTCC
5463]
Length = 147
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q L+ K+ ++ L+
Sbjct: 17 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAGLVTKMQDEERLT 76
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
EE R G+N A + TK + Y ++ E + GYL L N N R++++
Sbjct: 77 EEELTAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLNKNERVQEI 128
>gi|210608928|ref|ZP_03288065.1| hypothetical protein CLONEX_00245 [Clostridium nexile DSM 1787]
gi|210152845|gb|EEA83851.1| hypothetical protein CLONEX_00245 [Clostridium nexile DSM 1787]
Length = 149
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAV-------VRCETQDALLQKLLNDSY 173
+LAYIGD IY+L + L I + N +V + V+ TQ +++ + +
Sbjct: 31 TLAYIGDSIYDL------IIKSLVINQGNRQVNKLHKETSMYVQASTQSLMMRAMQEE-- 82
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
L+ EE V + G+N S + + Y RA+ E L GYLYL R+ D++ K+
Sbjct: 83 LTEEEHAVYKRGRNAKSVSP--AKNQSITDYRRATGFEALLGYLYLKKEWKRMLDLV-KI 139
Query: 233 GF 234
G
Sbjct: 140 GL 141
>gi|300362339|ref|ZP_07058515.1| possible ribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353330|gb|EFJ69202.1| possible ribonuclease III [Lactobacillus gasseri JV-V03]
Length = 147
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q AL+ K+ + + L
Sbjct: 21 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAALITKMQDLNMLDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
E + G+N S +T K + Y ++ E + GYL L
Sbjct: 78 NELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDL 118
>gi|300813920|ref|ZP_07094224.1| RNase3 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511983|gb|EFK39179.1| RNase3 domain protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 137
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 109 KVGKPRSV--FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQ 166
K+ +S+ N+ +LAY+GD ++EL R L + + + + + V+ + Q L++
Sbjct: 13 KICDEKSIKELNSLALAYVGDAVFELLVRTMVLKGNIPAHKLHTKSIKYVQAKGQKELIE 72
Query: 167 KLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAG 215
K+L LS EE V GKN + G Y A+ LE L G
Sbjct: 73 KVLQS--LSEEELGVYNRGKNSKPHTVAKNQTLGD--YMEATGLEALFG 117
>gi|148270169|ref|YP_001244629.1| ribonuclease III [Thermotoga petrophila RKU-1]
gi|170288876|ref|YP_001739114.1| ribonuclease III [Thermotoga sp. RQ2]
gi|281412489|ref|YP_003346568.1| ribonuclease III [Thermotoga naphthophila RKU-10]
gi|147735713|gb|ABQ47053.1| ribonuclease III [Thermotoga petrophila RKU-1]
gi|170176379|gb|ACB09431.1| ribonuclease III [Thermotoga sp. RQ2]
gi|281373592|gb|ADA67154.1| ribonuclease III [Thermotoga naphthophila RKU-10]
Length = 140
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAY+GD + EL R F + + RV Q +L+ + N L +ER
Sbjct: 17 AVLAYLGDAVLELIFRSRFT-GDYRMSVIHERVKEHTSKHGQAWMLENIWN--LLGEKER 73
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
++V+ N +A KR Y +++ E L GYL+L +R+E+++
Sbjct: 74 EIVKRAMNSKAA----KRHGNDPTYRKSTGFEALIGYLFLKREFDRIEELL 120
>gi|309799904|ref|ZP_07694109.1| YazC [Streptococcus infantis SK1302]
gi|308116494|gb|EFO53965.1| YazC [Streptococcus infantis SK1302]
Length = 128
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHLEATKYVSAKAQAHLISLMLEEEI 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENVERLEILIS 120
>gi|255659333|ref|ZP_05404742.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544]
gi|260848415|gb|EEX68422.1| cysteine--tRNA ligase [Mitsuokella multacida DSM 20544]
Length = 169
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQK---LLNDSYLSAEE 178
LAYIGD + L+ R LS E+ + + A+ Q L + L+ EE
Sbjct: 39 LAYIGDAFFHLFVRTRL----LSYEQAKVHALHAFSAQIVSAVWQHKAYLGIEPMLTDEE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDV 228
+ + R G+N A + R + A Y+ ++ E L G LYL+ RL+++
Sbjct: 95 KAIYRRGRN---AKSHAPRSSSVAEYHSSTGFEALLGALYLSEKFERLQEI 142
>gi|161506927|ref|YP_001576881.1| hypothetical protein lhv_0371 [Lactobacillus helveticus DPC 4571]
gi|160347916|gb|ABX26590.1| hypothetical protein lhv_0371 [Lactobacillus helveticus DPC 4571]
Length = 140
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE+ RRH + + + R V + Q L+ K+ ++ L+
Sbjct: 10 LNGQTLAYLGDAVYEVIIRRHLVKGGIVKPQVLQREATHYVSAKAQAGLVTKMQDEERLT 69
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
EE R G+N A + TK + Y ++ E + GYL L N N R++++
Sbjct: 70 EEELTAFRRGRN---AKSHTKAKNTSLKTYQLSTGFEAMIGYLDLLNKNERVQEI 121
>gi|241895140|ref|ZP_04782436.1| ribonuclease III [Weissella paramesenteroides ATCC 33313]
gi|241871636|gb|EER75387.1| ribonuclease III [Weissella paramesenteroides ATCC 33313]
Length = 145
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N LAY GD +YE+Y R+H L ++ + V + AL + + +
Sbjct: 14 LNGLDLAYYGDAVYEVYIRQHLLAKGITKPAKLQRESKKYVSAKAHAALYALIEAEGIYT 73
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
E+ + G+N AN+ TK + Y ++ E + GYL +N RLE+++S
Sbjct: 74 ETEQKYFKRGRN---ANSHTKAKNTDVVTYRISTGFEAVIGYLGASNQTERLEELIS 127
>gi|299143768|ref|ZP_07036848.1| cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518253|gb|EFI41992.1| cysteine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 141
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LA++GD +YEL R + L + ++ + ++ V+ + Q + +L+ L+ EE
Sbjct: 26 ALAFLGDAVYELLVRTYILSENKNPKKLHIEAISYVKAKAQANSIHNILDS--LTEEEIA 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232
+ + G+N S + A Y A+ E L GYLYL + +R+ ++ K+
Sbjct: 84 IYKRGRNAKSHT--MPKNADVLDYREATGFECLFGYLYLLDRGSRILELFKKM 134
>gi|409385011|ref|ZP_11237739.1| COG1939: Ribonuclease III family protein [Lactococcus raffinolactis
4877]
gi|399207481|emb|CCK18654.1| COG1939: Ribonuclease III family protein [Lactococcus raffinolactis
4877]
Length = 132
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYL 174
+ N +LAY GD +YE++ R + L ++ E + V + Q L+ ++ D L
Sbjct: 8 LLNGIALAYAGDAVYEVFVRDYLLSQGITKPGELQKTAVKFVSAKAQAFLISEMEKDDIL 67
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
+ EE + G+N S T + Y ++ E + G+ +LT+ +
Sbjct: 68 TEEELVYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAIFGFNHLTHKH 114
>gi|350270513|ref|YP_004881821.1| hypothetical protein OBV_21170 [Oscillibacter valericigenes
Sjm18-20]
gi|348595355|dbj|BAK99315.1| hypothetical protein OBV_21170 [Oscillibacter valericigenes
Sjm18-20]
Length = 135
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRC-ETQDALLQKLLNDSYLSAEER 179
LA++GD ++EL R + + +R + C E+Q +KL L+ EE
Sbjct: 21 GLAHVGDAVFELLVRSWLCAGGKATGKGMHRAAVAIVCAESQAKRAEKL--RPLLTEEEA 78
Query: 180 DVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN 221
V R G+N AN T A A Y A++LE L G+LYL+
Sbjct: 79 GVFRRGRN---ANVHTVPSHASRAQYAEATALEALLGWLYLSG 118
>gi|294781850|ref|ZP_06747182.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
gi|294481661|gb|EFG29430.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
Length = 131
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ LA+IGD I+EL R+++L +I N V V Q + ++++ +
Sbjct: 15 YTGLELAFIGDAIWELEIRKYYLQFGYNIPTLNKHVKNKVNARYQSLIYKQIIEE---LD 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTN 221
EE V+ GK ++N +T + + Y A++LE + G +YL N
Sbjct: 72 EEFKVI--GKRAKNSNIKTFPKTCTVMEYKEATALEAVVGAMYLLN 115
>gi|291459363|ref|ZP_06598753.1| putative RNase3 domain protein [Oribacterium sp. oral taxon 078
str. F0262]
gi|291417962|gb|EFE91681.1| putative RNase3 domain protein [Oribacterium sp. oral taxon 078
str. F0262]
Length = 156
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 122 LAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD +Y+L+ R + +F P +I N + +V Q ++ L+ L+ E
Sbjct: 35 LAYLGDGLYDLFVRDYVIFHYPGNIRRMNEKKKRLVCASAQSEIMGYLIGRKGLTEREMA 94
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMS 230
V R +N S +R+K + Y RA+ E L G LYL RL +++S
Sbjct: 95 VYRRARNHRS-ESRSK-NSTILDYRRATGFEALLGDLYLRREGERLMELVS 143
>gi|169335259|ref|ZP_02862452.1| hypothetical protein ANASTE_01667 [Anaerofustis stercorihominis DSM
17244]
gi|169257997|gb|EDS71963.1| RNase3 domain protein [Anaerofustis stercorihominis DSM 17244]
Length = 137
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 119 AASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
+ LAY+GD +YE+ R+ + + +++ N M V Q A + L D Y + E
Sbjct: 17 SKELAYLGDSVYEVNIRKTLIRLGIRGVKDLNKMSMNYVSALYQ-ADIFSFLKD-YFTEE 74
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSKL 232
E V G+N + + + + Y A++LE + GYLY L + +R++++M K+
Sbjct: 75 EMKVALRGRN--TKIKHSSKSVNISTYRLATALECVFGYLYLLDDTDRIKELMDKI 128
>gi|335049781|ref|ZP_08542767.1| RNase3 domain protein [Megasphaera sp. UPII 199-6]
gi|333762276|gb|EGL39780.1| RNase3 domain protein [Megasphaera sp. UPII 199-6]
Length = 158
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN---DSYL 174
+A +LA++GD Y L+ RR L I +V+ + E A Q + S+L
Sbjct: 34 DAITLAFVGDAYYALFLRRR--LTALGIPAV--QVLHALAAEFVSAKCQSFVYTCLQSFL 89
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKL 232
+ E+ + R +N A ++ + A AA Y+ +++LE L GYL L RL+ VM +
Sbjct: 90 TEAEKSLCRRSRN---AYSQVPKSASAAEYHNSTALEALIGYLVLDGQEARLQAVMQHV 145
>gi|379012780|ref|YP_005270592.1| hypothetical protein Awo_c29690 [Acetobacterium woodii DSM 1030]
gi|375303569|gb|AFA49703.1| hypothetical protein Awo_c29690 [Acetobacterium woodii DSM 1030]
Length = 151
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAYIGD IY R++ L + + VR Q +++ LL + L+
Sbjct: 30 MNPLALAYIGDGIYSDLIRKYLLGCGHQDVNLMTKTSINYVRASAQAQVIRVLLPE--LT 87
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
E + + G+N S + + A A Y A+ ETL GYLYL + R+ +++ K
Sbjct: 88 ETETRMFKRGRNTAS---QVPKNAAPADYRYATGFETLIGYLYLCGDLERMHELIVK 141
>gi|341820668|emb|CCC56963.1| ribonuclease III [Weissella thailandensis fsh4-2]
Length = 145
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N LAY GD +YE+Y RRH L ++ + V + AL + + +
Sbjct: 14 LNGLDLAYYGDAVYEVYIRRHLLAKGITKPAKLQRESKKYVSAKAHAALYALIEAEGIYT 73
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
E+ + G+N AN+ TK + Y ++ E + GYL ++ RLE+++S
Sbjct: 74 ETEQKYFKRGRN---ANSHTKAKNTDVVTYRISTGFEAVFGYLGASDQTERLEELIS 127
>gi|282852714|ref|ZP_06262056.1| RNase3 domain protein [Lactobacillus gasseri 224-1]
gi|311111193|ref|ZP_07712590.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus gasseri MV-22]
gi|282556456|gb|EFB62076.1| RNase3 domain protein [Lactobacillus gasseri 224-1]
gi|311066347|gb|EFQ46687.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Lactobacillus gasseri MV-22]
Length = 147
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q L+ K+ + L
Sbjct: 21 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAGLITKMQDLKMLDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNANRLEDV 228
E + G+N S +T K + Y ++ E + GYL L +R++++
Sbjct: 78 AELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDLLGKKDRVDEL 128
>gi|188589801|ref|YP_001919653.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|251778172|ref|ZP_04821092.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188500082|gb|ACD53218.1| ribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|243082487|gb|EES48377.1| ribonuclease III [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 141
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N LA IGD +YE++ R + L LS + + + ++ V+ + Q ++ L
Sbjct: 18 LNPLQLAIIGDGVYEIFIRTYILAKNEGLSANKIHRKAISYVKAQAQSNIMHNLEEYLTE 77
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+ + G+N SA + A Y A+ E L GYLYL N RLE ++ K
Sbjct: 78 EELR--IYKRGRNAKSAT--VPKNADVRDYRMATGFEALIGYLYLIGNKERLEFMLEK 131
>gi|441469791|emb|CCQ19546.1| Mini-ribonuclease 3 [Listeria monocytogenes]
gi|441472927|emb|CCQ22681.1| Mini-ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 119
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 125 IGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVR 183
+GD +YE + R + L + + + V + Q L+ ++ + +L+ EE + +
Sbjct: 1 MGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAK 60
Query: 184 WGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
G+N S G Y+ ++S E + GYLYL RL++ M K
Sbjct: 61 RGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEVERLQEWMEK 107
>gi|383753597|ref|YP_005432500.1| hypothetical protein SELR_07690 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365649|dbj|BAL82477.1| hypothetical protein SELR_07690 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 162
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAY+GD + L+ R L + ++ ++ +V Q Q + + L+ EE+
Sbjct: 39 LAYVGDAYFHLFVRTRLLSYEQAKVQALHSFSAQMVSAVWQAKAYQGI--EDKLTEEEKA 96
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKLGFTNGSS 239
+ R G+N A + R A A Y+ ++ E L G LYL+ N RL ++ +++ F S
Sbjct: 97 IYRRGRN---AKSHAPRSASVAEYHASTGFEALLGSLYLSEQNERLYEI-AEMSFQIISQ 152
Query: 240 TQM 242
M
Sbjct: 153 AMM 155
>gi|340754478|ref|ZP_08691230.1| hypothetical protein FSAG_02040 [Fusobacterium sp. 2_1_31]
gi|422314859|ref|ZP_16396310.1| hypothetical protein FPOG_00590 [Fusobacterium periodonticum D10]
gi|229423983|gb|EEO39030.1| hypothetical protein FSAG_02040 [Fusobacterium sp. 2_1_31]
gi|404593258|gb|EKA94829.1| hypothetical protein FPOG_00590 [Fusobacterium periodonticum D10]
Length = 131
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+ LA+IGD I+EL RR++L SI N V V Q + ++++ +
Sbjct: 15 YTGLELAFIGDAIWELEIRRYYLQFGYSIPTLNKYVKNKVNARYQSLIYKQIIEE---LD 71
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYLTN 221
E+ V+ GK ++N +T + + Y A++LE + G +YL N
Sbjct: 72 EKFKVI--GKRAKNSNIKTFPKTCTVMEYREATALEAVVGAMYLLN 115
>gi|124360400|gb|ABN08413.1| hypothetical protein MtrDRAFT_AC155896g41v2 [Medicago truncatula]
Length = 47
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 215 GYLYLTNANRLEDVMSKLGFTNGSSTQMILEE 246
GYLYLTN NRLE +M +LGF+ SS + LEE
Sbjct: 7 GYLYLTNVNRLEKLMLELGFSVDSSMPLNLEE 38
>gi|399924307|ref|ZP_10781665.1| ribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 135
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD YE+ R L + + + + VR + Q L +K+ + L+ +E
Sbjct: 25 ALAYIGDACYEILVRSKILDLRKNPNKLHRESIKFVRAKGQRDLFEKI--EDMLTEDEMR 82
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+ + G+N S + A Y A+ +E L GYLYL
Sbjct: 83 IFKRGRNAKSHT--VPKNADPIDYRIATGVEALFGYLYL 119
>gi|116629011|ref|YP_814183.1| hypothetical protein LGAS_0339 [Lactobacillus gasseri ATCC 33323]
gi|420147687|ref|ZP_14654962.1| Hypothetical protein A131_139563 [Lactobacillus gasseri CECT 5714]
gi|116094593|gb|ABJ59745.1| hypothetical protein LGAS_0339 [Lactobacillus gasseri ATCC 33323]
gi|398400834|gb|EJN54365.1| Hypothetical protein A131_139563 [Lactobacillus gasseri CECT 5714]
Length = 158
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q L+ K+ + L
Sbjct: 32 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAGLITKMQDLKMLDE 88
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNANRLEDV 228
E + G+N S +T K + Y ++ E + GYL L +R++++
Sbjct: 89 AELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDLLGKKDRVDEL 139
>gi|187934605|ref|YP_001884455.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187722758|gb|ACD23979.1| ribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 141
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYL 174
N LA IGD +YE++ R + L LS + + + ++ V+ + Q ++ L
Sbjct: 18 LNPLQLAIIGDGVYEIFIRTYILAENEGLSANKIHRKAISYVKAQAQSNIMHNLEEYLTE 77
Query: 175 SAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+ + G+N SA + A Y A+ E L GYLYL N RLE ++ K
Sbjct: 78 EELR--IYKRGRNAKSAT--VPKNADVRDYRMATGFEALIGYLYLIGNKERLEFMLEK 131
>gi|313887575|ref|ZP_07821258.1| RNase3 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846453|gb|EFR33831.1| RNase3 domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 135
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAYIGD +E+ R L + + + + VR + Q L +K+ + L+ +E
Sbjct: 25 ALAYIGDACFEILVRSEILDIRKNPNKLHRESIRYVRAKGQRELFEKI--EDLLTEDEMR 82
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
+ + G+N S + A Y A+ +E L GYLYL +R+ D+ ++
Sbjct: 83 IFKRGRNAKSHT--VPKNADPIDYRIATGVEALYGYLYLLKRYDRIRDLFKEM 133
>gi|289422429|ref|ZP_06424272.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
gi|429727476|ref|ZP_19262244.1| RNase3 domain protein [Peptostreptococcus anaerobius VPI 4330]
gi|289157001|gb|EFD05623.1| ribonuclease III [Peptostreptococcus anaerobius 653-L]
gi|429152245|gb|EKX95076.1| RNase3 domain protein [Peptostreptococcus anaerobius VPI 4330]
Length = 135
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 121 SLAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
+LAY+GD +YE Y R + + L I + + + V Q ++ L + L+ EE
Sbjct: 18 TLAYLGDTVYESYIREYLIKRNIFLKINDLHKSAIKYVSAHAQSKAIKGL--EDILTEEE 75
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLE 226
+ + G+N NT K A Y A+ E + GY+YL + +RL+
Sbjct: 76 TTIFKRGRN-HKKNTAAK-NASVIDYRHATGFEAVIGYVYLKGDIDRLD 122
>gi|52078590|ref|YP_077381.1| hypothetical protein BL03270 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649136|ref|ZP_08003344.1| hypothetical protein HMPREF1012_04383 [Bacillus sp. BT1B_CT2]
gi|404487459|ref|YP_006711565.1| ribonuclease MrnC [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680488|ref|ZP_17655327.1| hypothetical protein MUY_00288 [Bacillus licheniformis WX-02]
gi|52001801|gb|AAU21743.1| putative Ribonuclease III, conserved hypothetical YazC protein
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346453|gb|AAU39087.1| putative ribonuclease MrnC [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317388836|gb|EFV69655.1| hypothetical protein HMPREF1012_04383 [Bacillus sp. BT1B_CT2]
gi|383441594|gb|EID49303.1| hypothetical protein MUY_00288 [Bacillus licheniformis WX-02]
Length = 138
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD + E+Y R H L ++ + + + V ++Q ++L L + +
Sbjct: 12 LNGLALAYMGDAVLEVYVRHHLLKQGMTRPNDLHRQSRRYVSAKSQASMLFALEEQEFFT 71
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
EE+ V+R G+N S + Y +++ E + GYL+L N +RL +++
Sbjct: 72 EEEQAVLRRGRNAKSGT--VPKNTDVQTYRYSTAFEAVIGYLFLENREDRLNELI 124
>gi|332637992|ref|ZP_08416855.1| ribonuclease III [Weissella cibaria KACC 11862]
Length = 142
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-----IEEYNNRVMAVVRCETQDALLQKLLND 171
N LAY GD +YE+Y R+H L ++ E N V A + AL + +
Sbjct: 10 LNGLDLAYYGDAVYEVYIRQHLLAKGITKPARLQRESKNYVSA----KAHAALYALMEAE 65
Query: 172 SYLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
L+ EE + G+N AN+ TK + Y ++ E L G+L +N RL++++
Sbjct: 66 DLLTEEEMVYFKRGRN---ANSHTKAKNTDVVTYRISTGFEALIGFLAASNQTARLDEIV 122
Query: 230 S 230
+
Sbjct: 123 A 123
>gi|313893265|ref|ZP_07826840.1| RNase3 domain protein [Veillonella sp. oral taxon 158 str. F0412]
gi|313442161|gb|EFR60578.1| RNase3 domain protein [Veillonella sp. oral taxon 158 str. F0412]
Length = 132
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
+A LAYIGD +Y +Y R + ++ + + ++ C A + + D++ + +
Sbjct: 13 DAVMLAYIGDAVYSMYVRERVVQMNITKVQVLHTIVTEFICAKSQAKVLLEIEDTF-TEQ 71
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
E+ + R +N +N + + Y +++ E + G+LY T+ + RL+ +M +
Sbjct: 72 EQAIARRARN---SNVNVPKSSTVQEYRSSTAFEAVLGFLYETHQDERLQHIMGQ 123
>gi|116512728|ref|YP_811635.1| ribonuclease III family protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116108382|gb|ABJ73522.1| Ribonuclease III family protein [Lactococcus lactis subsp. cremoris
SK11]
Length = 133
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSY 173
+ N +LAY+GD I+E++ R + L L+ + + V + Q +++ + +
Sbjct: 7 ELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRDMEEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
L+ E + G+N S T + Y ++ E + G L+LT N RL++
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQENERLKE 119
>gi|377557024|ref|ZP_09786690.1| Ribonuclease III [Lactobacillus gastricus PS3]
gi|376166670|gb|EHS85559.1| Ribonuclease III [Lactobacillus gastricus PS3]
Length = 138
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE++ R+ L +S + + V + Q AL+ + ++ L+
Sbjct: 9 LNGIALAYLGDAVYEVFIRQRLLDLGMSKPDRLQKKATHYVSAKAQAALVDLMADEDILT 68
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
E + G+N S + Y +++ E L GYL +T R+E++ S
Sbjct: 69 EVEWAYYKRGRNAKSYT--HAKNTSILTYRQSTGFEALFGYLKVTEQTERIEELAS 122
>gi|333896168|ref|YP_004470042.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
gi|333111433|gb|AEF16370.1| ribonuclease III [Thermoanaerobacterium xylanolyticum LX-11]
Length = 140
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 109 KVGKPRSVFNAASL--AYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALL 165
KV + V N + L A+IGD +Y+L+ R + I + + + V+ +Q +L
Sbjct: 9 KVFTKKDVMNLSPLIMAFIGDSVYDLFIRTNISAKGNRPINKIHRECVKYVKASSQSEIL 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NR 224
+ L + EE+D++R G+NV SA + AG Y +A++ E L GYLYL +R
Sbjct: 69 KNLYD--IFDEEEKDIIRRGRNVKSATI--PKHAGIEEYRQATAFEALLGYLYLLGRYDR 124
Query: 225 LEDVMS 230
L+++++
Sbjct: 125 LDEILN 130
>gi|229828826|ref|ZP_04454895.1| hypothetical protein GCWU000342_00909 [Shuttleworthia satelles DSM
14600]
gi|229791989|gb|EEP28103.1| hypothetical protein GCWU000342_00909 [Shuttleworthia satelles DSM
14600]
Length = 144
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 121 SLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAYIGD I++L R + PP + + + +VR +Q +++ + D L+
Sbjct: 27 TLAYIGDGIFDLIIRSLVVGSANMPPNRLHSHTSH---IVRAASQARMMEAIEAD--LTE 81
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
EE D+ R G+N S + A Y A+ E L G+ YL
Sbjct: 82 EEADIYRRGRNAKSYT--HAKNATLIDYRIATGFEALMGWHYL 122
>gi|385837537|ref|YP_005875167.1| Ribonuclease III like protein [Lactococcus lactis subsp. cremoris
A76]
gi|414074875|ref|YP_007000092.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
gi|358748765|gb|AEU39744.1| Ribonuclease III like protein [Lactococcus lactis subsp. cremoris
A76]
gi|413974795|gb|AFW92259.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
Length = 139
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSY 173
+ N +LAY+GD I+E++ R + L L+ + + V + Q +++ + +
Sbjct: 13 ELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRDMEEVDF 72
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
L+ E + G+N S T + Y ++ E + G L+LT N RL++
Sbjct: 73 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQENERLKE 125
>gi|389855188|ref|YP_006357432.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
gi|300071610|gb|ADJ61010.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
Length = 133
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSY 173
+ N +LAY+GD I+E++ R + L L+ + + V + Q +++ + +
Sbjct: 7 ELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRAMEEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
L+ E + G+N S T + Y ++ E + G L+LT N RL++
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQENERLKE 119
>gi|403253324|ref|ZP_10919625.1| hypothetical protein EMP_06092 [Thermotoga sp. EMP]
gi|402810858|gb|EJX25346.1| hypothetical protein EMP_06092 [Thermotoga sp. EMP]
Length = 140
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAY+GD + EL R F + + RV Q +L+ + N L +E+
Sbjct: 17 AVLAYLGDAVLELIFRSRFT-GDYRMSVIHERVKEHTSKHGQAWMLENIWN--LLDEKEQ 73
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
++V+ N +A KR Y +++ E L GYL+L + +R+E+++
Sbjct: 74 EIVKRAMNSKAA----KRHGNDPAYRKSTGFEALIGYLFLKRDFDRIEELL 120
>gi|125624811|ref|YP_001033294.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|124493619|emb|CAL98606.1| Ribonuclease III (EC 3.1.26.3) (RNase III) [Lactococcus lactis
subsp. cremoris MG1363]
Length = 139
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNR-VMAVVRCETQDALLQKLLNDSY 173
+ N +LAY+GD I+E++ R + L L+ + + V + Q +++ + +
Sbjct: 13 ELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRAMEEVDF 72
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLED 227
L+ E + G+N S T + Y ++ E + G L+LT N RL++
Sbjct: 73 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQENERLKE 125
>gi|323141395|ref|ZP_08076286.1| RNase3 domain protein [Phascolarctobacterium succinatutens YIT
12067]
gi|322414144|gb|EFY04972.1| RNase3 domain protein [Phascolarctobacterium succinatutens YIT
12067]
Length = 155
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-----IEEYNNRVMAVVRCETQDALLQKLLNDS 172
N LAYIGD ++ +Y R L P S + + +++++ V C+ Q +Q+L ++
Sbjct: 31 NPILLAYIGDVVFSMYVRLRLL--PTSKHVRIVHDIGSKMVSAV-CQCQA--MQQL--EA 83
Query: 173 YLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
LS EE + R G+N S ++ A Y A++ E L G+L+
Sbjct: 84 GLSEEESVIFRRGRNTKSMVPKS---ASVHEYRMATAFEALLGWLF 126
>gi|291530524|emb|CBK96109.1| Uncharacterized protein conserved in bacteria [Eubacterium siraeum
70/3]
Length = 133
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 98 MGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVV 156
M YE P K +LA+ GD +YE+Y R + + +++ + + + V
Sbjct: 1 MMYEIMTPAEAKA------LGGLTLAFFGDSVYEVYVREQIVKLGTMPVDKLHKKAVQYV 54
Query: 157 RCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGY 216
Q + + EE ++ + G+N N R + Y RA+ +E L GY
Sbjct: 55 NAGFQSYAYDIIAELL--TEEETEIFKRGRNATGNNV--PRSSNPKDYRRATGMEALFGY 110
Query: 217 LYLTNAN-RLEDVMSKL 232
LYLT N R++++ K+
Sbjct: 111 LYLTGQNDRIKELFEKI 127
>gi|160893353|ref|ZP_02074140.1| hypothetical protein CLOL250_00903 [Clostridium sp. L2-50]
gi|156865045|gb|EDO58476.1| RNase3 domain protein [Clostridium sp. L2-50]
Length = 152
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
++ +LAYIGD +++L + + +Y+ + +V E+Q + L + L+
Sbjct: 23 YSGLALAYIGDSVFDLLVKTVLVSKDNKQAFKYHKEAIHIVNAESQAGYIDLL--EEKLT 80
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
+E + + G+N T +K + A Y +A+ E L GYLYL
Sbjct: 81 EQEMAIYKRGRNT---KTHSKAKNASVGQYRKATGFEALIGYLYL 122
>gi|238853165|ref|ZP_04643552.1| ribonuclease III [Lactobacillus gasseri 202-4]
gi|238834219|gb|EEQ26469.1| ribonuclease III [Lactobacillus gasseri 202-4]
Length = 147
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 121 SLAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YE+Y RRH + P ++ Y V + Q L+ ++ + L
Sbjct: 21 TLAYLGDGVYEVYIRRHLVKGGIVKPQMLQRYATH---YVSAKAQAGLITRMQDLKMLDE 77
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYL-YLTNANRLEDV 228
E + G+N S +T K + Y ++ E + GYL L +R++++
Sbjct: 78 AELAAFKRGRNAKS-HTHAKNTS-INTYKLSTGFEAMFGYLDLLGKKDRVDEL 128
>gi|320530263|ref|ZP_08031332.1| RNase3 domain protein [Selenomonas artemidis F0399]
gi|320137478|gb|EFW29391.1| RNase3 domain protein [Selenomonas artemidis F0399]
Length = 165
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN---DSYLSAEE 178
LAY+GD + LY R L+ E+ +++ + A+ Q +S LS EE
Sbjct: 39 LAYVGDAYFHLYVR----IRLLAYEQAKVQILDTFSAQIVSAVWQAKAYRGIESMLSEEE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
R + R +N S R+ A A Y+ ++ E L G LY+ RLE++
Sbjct: 95 RTIYRRARNTKSHAPRS---ATVAEYHTSTGFEALLGSLYMRGETARLEEI 142
>gi|294791946|ref|ZP_06757094.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27]
gi|294457176|gb|EFG25538.1| cysteine--tRNA ligase [Veillonella sp. 6_1_27]
Length = 158
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
+A LAYIGD +Y +Y R + ++ + + ++ C A + + D++ + E
Sbjct: 39 DAVMLAYIGDAVYSMYVRERVVQMNITKVQVLHTIVTEFICAKSQAKVLLEIEDAF-TEE 97
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
E+ + R +N +N + + Y +++ E + G+LY T +RL+ ++ +
Sbjct: 98 EQAIARRARN---SNVNVPKSSTVQEYRSSTAFEAVLGFLYETRQEDRLQHILGQ 149
>gi|399055785|ref|ZP_10743435.1| hypothetical protein PMI08_05045 [Brevibacillus sp. CF112]
gi|433543314|ref|ZP_20499724.1| hypothetical protein D478_06384 [Brevibacillus agri BAB-2500]
gi|398046648|gb|EJL39242.1| hypothetical protein PMI08_05045 [Brevibacillus sp. CF112]
gi|432185443|gb|ELK42934.1| hypothetical protein D478_06384 [Brevibacillus agri BAB-2500]
Length = 133
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 122 LAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
LA++GD Y R H L P + + NR V + Q +L L+ L E
Sbjct: 18 LAFLGDATYAHCVRYHLIAKGLVKPNQLHKAANRY---VSAKAQANVLLALM--PTLPEE 72
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSK 231
E +VV+ G+N S +T + A Y A++ E L GYLYL R+ +++ +
Sbjct: 73 ELNVVKRGRNAKSGST--AKNADIIDYRHATAFEALIGYLYLCGKEERIAEIVQQ 125
>gi|15644486|ref|NP_229538.1| hypothetical protein TM1740 [Thermotoga maritima MSB8]
gi|418045797|ref|ZP_12683892.1| ribonuclease III [Thermotoga maritima MSB8]
gi|4982317|gb|AAD36805.1|AE001812_15 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351676682|gb|EHA59835.1| ribonuclease III [Thermotoga maritima MSB8]
Length = 140
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
A LAY+GD + EL R F + + RV Q +L+ + N L E+
Sbjct: 17 AVLAYLGDAVLELIFRSRFT-GDYRMSVIHERVKEHTSKHGQAWMLENIWN--LLDEREQ 73
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVM 229
++V+ N +A KR Y +++ E L GYL+L +R+E+++
Sbjct: 74 EIVKRAMNSKAA----KRHGNDPTYRKSTGFEALIGYLFLKREFDRIEELL 120
>gi|319901011|ref|YP_004160739.1| ABC transporter related protein [Bacteroides helcogenes P 36-108]
gi|319416042|gb|ADV43153.1| ABC transporter related protein [Bacteroides helcogenes P 36-108]
Length = 656
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 82 LKHPTQGVVANLDESYMGYERWLPNPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFP 141
L+ PT GVVA E +GY LP + R+V A LA+ D I+E+ A
Sbjct: 50 LQQPTSGVVATPRECTVGY---LPQVMILSDERTVMQEAELAF--DHIFEMQA------- 97
Query: 142 PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAG 200
IE N R+ E++D QKL+ D + ER ++ G N + RT + G
Sbjct: 98 --DIERMNRRLAERTDYESED--YQKLI-DRFTHENERFLMMGGTNYRAEIERTLQGLG 151
>gi|197301391|ref|ZP_03166472.1| hypothetical protein RUMLAC_00122 [Ruminococcus lactaris ATCC
29176]
gi|197299548|gb|EDY34067.1| RNase3 domain protein [Ruminococcus lactaris ATCC 29176]
Length = 161
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 122 LAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
LAY+GDC+++L + + P + E +R V+ Q +++ + +L+ E
Sbjct: 32 LAYVGDCVFDLIVKTMVVGRGNRPVHRLHEETSR---YVQASAQSYMMRFM--QEHLNEE 86
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
E V R G+N S + + Y RA+ E L G+LYL+
Sbjct: 87 EHAVYRRGRNARSVS--PAKNQSITDYRRATGFEALIGHLYLSE 128
>gi|226309786|ref|YP_002769680.1| hypothetical protein BBR47_01990 [Brevibacillus brevis NBRC 100599]
gi|398813151|ref|ZP_10571853.1| hypothetical protein PMI05_00246 [Brevibacillus sp. BC25]
gi|380876944|sp|C0ZIF8.1|MRNC_BREBN RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|226092734|dbj|BAH41176.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
gi|398039312|gb|EJL32450.1| hypothetical protein PMI05_00246 [Brevibacillus sp. BC25]
Length = 134
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 122 LAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
LA++GD Y R H L P + + NR V + Q +L L+ L E
Sbjct: 18 LAFLGDATYSHCVRYHLIAKGLVKPNQLHKAANRY---VSAKAQANVLLTLM--PTLPEE 72
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR--LEDVMSKLGFT 235
E +VV+ G+N S ++ + A Y A++ E L GYLYL+ E V
Sbjct: 73 ELNVVKRGRNAKSGSS--AKNADIIDYRHATAFEALIGYLYLSGKEERIAEIVQQAFAIV 130
Query: 236 NGSS 239
G S
Sbjct: 131 EGES 134
>gi|167756029|ref|ZP_02428156.1| hypothetical protein CLORAM_01549 [Clostridium ramosum DSM 1402]
gi|237734014|ref|ZP_04564495.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365832781|ref|ZP_09374308.1| hypothetical protein HMPREF1021_03072 [Coprobacillus sp. 3_3_56FAA]
gi|374627780|ref|ZP_09700181.1| hypothetical protein HMPREF0978_03501 [Coprobacillus sp.
8_2_54BFAA]
gi|167704021|gb|EDS18600.1| RNase3 domain protein [Clostridium ramosum DSM 1402]
gi|229382840|gb|EEO32931.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365259911|gb|EHM89886.1| hypothetical protein HMPREF1021_03072 [Coprobacillus sp. 3_3_56FAA]
gi|373912831|gb|EHQ44675.1| hypothetical protein HMPREF0978_03501 [Coprobacillus sp.
8_2_54BFAA]
Length = 125
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFPPLSIE--EYNNRVMAVVRCETQDALLQKLLNDSY 173
+ NA+ LAY+GD I+E+ R + + ++ + + V + A + +L++ +
Sbjct: 5 LINASVLAYLGDSIFEVLVRDYLVKESGFVKPNDLQREAVKYVSASSHAAFMHDMLDEEF 64
Query: 174 LSAEERDVVRWGKNV-GSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
SA+E + G+N GS N + ++ E + G LYL N +R++ + +
Sbjct: 65 FSADEVGTYKRGRNTKGSKNESLD-------HMHSTGFEAVIGTLYLEENFDRIKVIFER 117
>gi|266623923|ref|ZP_06116858.1| putative RNase3 domain protein [Clostridium hathewayi DSM 13479]
gi|288864255|gb|EFC96553.1| putative RNase3 domain protein [Clostridium hathewayi DSM 13479]
Length = 150
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 121 SLAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAYIGD +YEL R + + + + + + ++V TQ +++ ++ + + EE
Sbjct: 33 ALAYIGDAVYELIVRTMVISHGSIQVNKMHKKSASLVNAGTQAEMIRLMMEEL--TEEET 90
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL--GF 234
V + G+N S T + A Y A+ E L GYLYL RLE +++ + GF
Sbjct: 91 AVYKRGRNAKSVT--TAKHATVVDYRTATGFEALCGYLYLM--GRLERLVTLISHGF 143
>gi|15673832|ref|NP_268007.1| hypothetical protein L101219 [Lactococcus lactis subsp. lactis
Il1403]
gi|281492463|ref|YP_003354443.1| hypothetical protein LLKF_2043 [Lactococcus lactis subsp. lactis
KF147]
gi|385831333|ref|YP_005869146.1| ribonuclease III family protein [Lactococcus lactis subsp. lactis
CV56]
gi|418039102|ref|ZP_12677411.1| hypothetical protein LLCRE1631_02218 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|81537534|sp|Q9CEJ1.1|MRNC_LACLA RecName: Full=Mini-ribonuclease 3; Short=Mini-3; Short=Mini-RNase
3; AltName: Full=Mini-RNase III; Short=Mini-III
gi|12724881|gb|AAK05948.1|AE006415_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|281376127|gb|ADA65618.1| Hypothetical protein LLKF_2043 [Lactococcus lactis subsp. lactis
KF147]
gi|326407341|gb|ADZ64412.1| ribonuclease III family protein [Lactococcus lactis subsp. lactis
CV56]
gi|354692462|gb|EHE92285.1| hypothetical protein LLCRE1631_02218 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 133
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N +LAYIGD IYE++ R + L L+ V + Q ++ + +
Sbjct: 7 ELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLED 227
L+ E + G+N S T + Y ++ E + G L+LT RL++
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQQKERLQE 119
>gi|374673959|dbj|BAL51850.1| hypothetical protein lilo_1854 [Lactococcus lactis subsp. lactis
IO-1]
Length = 133
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N +LAYIGD IYE++ R + L L+ V + Q ++ + +
Sbjct: 7 ELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLED 227
L+ E + G+N S T + Y ++ E + G L+LT RL++
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQQKERLQE 119
>gi|313896359|ref|ZP_07829912.1| RNase3 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975158|gb|EFR40620.1| RNase3 domain protein [Selenomonas sp. oral taxon 137 str. F0430]
Length = 165
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN---DSYLSAEE 178
LAY+GD + LY R L+ E+ +++ + A+ Q +S LS EE
Sbjct: 39 LAYVGDAYFHLYVRMRL----LAYEQAKVQILDTFSAQIVSAVWQAKAYRGIESMLSEEE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
R + R +N S R+ A A Y+ ++ E L G LY+ RLE++
Sbjct: 95 RTIYRRARNTKSHAPRS---ATVAEYHVSTGFEALLGSLYMRGETARLEEI 142
>gi|389844994|ref|YP_006347074.1| hypothetical protein Theba_2198 [Mesotoga prima MesG1.Ag.4.2]
gi|387859740|gb|AFK07831.1| hypothetical protein Theba_2198 [Mesotoga prima MesG1.Ag.4.2]
Length = 136
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 121 SLAYIGDCIYELYARRHFLFPPL--SIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
SLA++GD +Y LY R + L P +N V V Q L+++ + L EE
Sbjct: 28 SLAFLGDAVYSLYFRLNTL-PQARRRAGHQHNIVKDYVSASGQRKALEEVAD--LLDEEE 84
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
+++VR G N + +K+ Y A++ E L GYL+L
Sbjct: 85 KEIVRRGYN----SRGSKKHGDDEDYKMATAFEALIGYLFL 121
>gi|313891887|ref|ZP_07825489.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
gi|313119662|gb|EFR42852.1| conserved hypothetical protein [Dialister microaerophilus UPII
345-E]
Length = 146
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 108 PKVGKPRSVF--------NAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRC 158
++GK +++ +A +LAY+GD + + RR + + ++ N+ M+ V
Sbjct: 3 ERLGKQKTILTEQDCFSMDALTLAYMGDVCWSHFIRRQLIATGIYHVQVLNDISMSAVSA 62
Query: 159 ETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
Q A++ L D + ER++ + K + N+ + A Y +++ E + GYLY
Sbjct: 63 RKQ-AVIMNDLRDLF---SEREI-KVAKRARNTNSTVPKSATVEEYRESTAFEGVLGYLY 117
Query: 219 LT-NANRLEDVMSK 231
L+ RL +M K
Sbjct: 118 LSGQTERLNFIMEK 131
>gi|335427934|ref|ZP_08554854.1| hypothetical protein HLPCO_03225 [Haloplasma contractile SSD-17B]
gi|334893860|gb|EGM32069.1| hypothetical protein HLPCO_03225 [Haloplasma contractile SSD-17B]
Length = 129
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LAYIGD Y+L R++ + + + + + V ++Q +++ +++
Sbjct: 5 TLLNGTTLAYIGDSYYDLCIRKYLIDNGYTKGKALHKQSTRYVSAKSQSLIIKYFREENF 64
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT 220
L+ EE ++V+ G+N + R R Y ++S E L GYLYLT
Sbjct: 65 LTEEEENIVKRGRNAKVKSNR--RNTDILTYKHSTSYEALIGYLYLT 109
>gi|283769305|ref|ZP_06342205.1| RNase3 domain protein [Bulleidia extructa W1219]
gi|283104081|gb|EFC05464.1| RNase3 domain protein [Bulleidia extructa W1219]
Length = 124
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSIEE-YNNRVMAVVRCETQDALLQKLLNDSY 173
S ++ +LA++GD ++ L R L + + ++ V + Q ++L + +
Sbjct: 4 SSYSGRTLAFLGDAVWSLEVRNSLLMDGQGQGKILQKKSISYVSAKAQAQFYEQLHQEGF 63
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSKL 232
S EE + R G+N + T + Y ++ E + G LY L N R+ + K+
Sbjct: 64 FSEEEENWYRLGRN--NHGGSTPKNTDVQTYRMSTGFEAILGALYLLGNETRIRQIWDKV 121
>gi|358066737|ref|ZP_09153227.1| hypothetical protein HMPREF9333_00106 [Johnsonella ignava ATCC
51276]
gi|356695008|gb|EHI56659.1| hypothetical protein HMPREF9333_00106 [Johnsonella ignava ATCC
51276]
Length = 143
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 122 LAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YE R + S+++ + + Q L + + LS EE
Sbjct: 27 LAYIGDAVYETVVRTVIISKGNKSVKKLHTQATEYTSAAGQAKLFRNI--KDLLSEEEYA 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN 223
+ + G+N S + + + A + Y A+ LETL G+LY+ N N
Sbjct: 85 IFKRGRN--SNSHSSAKNASVSDYRHATGLETLLGFLYI-NGN 124
>gi|334127789|ref|ZP_08501691.1| ribonuclease III [Centipeda periodontii DSM 2778]
gi|333388510|gb|EGK59684.1| ribonuclease III [Centipeda periodontii DSM 2778]
Length = 164
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQ----KLLNDSYLSAE 177
LAY+GD + LY R LS E+ + + + AL Q + ++D L+ E
Sbjct: 39 LAYVGDAYFHLYVR----MRLLSYEQAQVQALHSFSAQIVSALWQAHAYRAISDM-LTEE 93
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
E+ + R +N S R+ A A Y+ ++ E L G LY+ + RLE++
Sbjct: 94 EQTIYRRARNTKSHAPRS---ASVADYHTSTGFEALLGSLYIRKEHERLEEI 142
>gi|402303275|ref|ZP_10822371.1| ribonuclease III domain protein [Selenomonas sp. FOBRC9]
gi|400378905|gb|EJP31755.1| ribonuclease III domain protein [Selenomonas sp. FOBRC9]
Length = 165
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLN---DSYLSAEE 178
LAY+GD + LY R L+ E+ +++ + A+ Q +S LS EE
Sbjct: 39 LAYVGDAYFHLYVRMRL----LAYEQAKVQILDTFSAQIVSAVWQAKAYRGIESMLSEEE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDV 228
R + R +N S R+ A A Y+ ++ E L G Y+ RLE++
Sbjct: 95 RTIYRRARNTKSHAPRS---ATVAEYHTSTGFEALLGSFYMRGETARLEEI 142
>gi|167039501|ref|YP_001662486.1| hypothetical protein Teth514_0847 [Thermoanaerobacter sp. X514]
gi|166853741|gb|ABY92150.1| Uncharacterized protein-like protein [Thermoanaerobacter sp. X514]
Length = 110
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
LS EE+D+VR G+N+ S NT T + Y A+ E L GYLYL RL++++
Sbjct: 47 LSEEEKDIVRRGRNMKS-NT-TPKGVEVQAYRYATGFEALLGYLYLAGEFERLKNILE 102
>gi|223982634|ref|ZP_03632868.1| hypothetical protein HOLDEFILI_00142 [Holdemania filiformis DSM
12042]
gi|223965414|gb|EEF69692.1| hypothetical protein HOLDEFILI_00142 [Holdemania filiformis DSM
12042]
Length = 133
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRV-MAVVRCETQDALLQKLLNDSYLS 175
+ ++LAYIGD ++ L R + + + R+ + V + Q ++L S
Sbjct: 6 LSGSTLAYIGDAVWSLLVREYLVELGYGRAKDLQRLSVNFVSAKAQARFYEQLHAAGAFS 65
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSKLGF 234
EE ++ R G+N S + + +Y ++ E L G+ +LT RL ++ ++
Sbjct: 66 EEEEEIFRRGRNFKSGS--VPKNTDVQIYRISTGFEALTGWWHLTGQTARLREIWEQVRP 123
Query: 235 TNGSSTQM 242
T G +++
Sbjct: 124 TVGLESKL 131
>gi|390934102|ref|YP_006391607.1| ribonuclease III [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569603|gb|AFK86008.1| ribonuclease III [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 140
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 109 KVGKPRSVFNAASL--AYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALL 165
KV + V N + L A+IGD +Y+L+ R + I + + + V+ +Q +L
Sbjct: 9 KVFTRKDVMNLSPLIMAFIGDSVYDLFIRTNISAKGNRPINKIHRECVKYVKASSQSEIL 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NR 224
+ L + EE+D++R G+NV SA + AG Y A++ E L GYLYL +R
Sbjct: 69 KNLYD--MFDEEEKDIIRRGRNVKSATI--PKHAGIEEYRLATAFEALLGYLYLLGRYDR 124
Query: 225 LEDVMS 230
L+++++
Sbjct: 125 LDEILN 130
>gi|359410051|ref|ZP_09202516.1| ribonuclease III [Clostridium sp. DL-VIII]
gi|357168935|gb|EHI97109.1| ribonuclease III [Clostridium sp. DL-VIII]
Length = 137
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N LA IGD ++E++ R L LS + + + + V+ ++Q ++ ++
Sbjct: 17 MLNPLQLALIGDGVFEVFIRNFILMKNTALSANKVHVKAIGYVKAKSQACIMHEIEELL- 75
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
EE + + G+N S + A Y A+ E L GYLYL N RLE + K
Sbjct: 76 -EEEEEAIYKRGRNAKSPTV--PKNADVRDYRMATGFEALVGYLYLIGNKERLEFIFKK 131
>gi|269798075|ref|YP_003311975.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|269094704|gb|ACZ24695.1| ribonuclease III [Veillonella parvula DSM 2008]
Length = 164
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+A LAYIGD +Y +Y R + ++ ++ + V + ++Q +L ++ N +
Sbjct: 45 DAVMLAYIGDAVYSMYVRERVVQMNITKVQILHTIVTEFICAKSQAKVLLEIENT--FTE 102
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+E+ + R +N +N + + Y +++ E + G+LY T RL+ +M +
Sbjct: 103 DEQAIARRARN---SNVNVPKSSTVQEYRSSTAFEAVLGFLYETRQEERLQHIMGQ 155
>gi|410727956|ref|ZP_11366149.1| hypothetical protein A370_04284 [Clostridium sp. Maddingley
MBC34-26]
gi|410597516|gb|EKQ52127.1| hypothetical protein A370_04284 [Clostridium sp. Maddingley
MBC34-26]
Length = 137
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N LA IGD ++E++ R + L LS + + + + V+ ++Q ++ ++
Sbjct: 17 LLNPLQLALIGDGVFEVFVRNYILTENTALSANKIHVKAIGYVKAKSQALVMHEIEEFLD 76
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+ V + G+N SA + A Y A+ E L GYLYL N RL + +K
Sbjct: 77 EEEDA--VYKRGRNTKSAT--VPKNADVRDYRMATGFEALIGYLYLIGNKERLNFIFNK 131
>gi|424780853|ref|ZP_18207720.1| Ribonuclease III family protein [Catellicoccus marimammalium
M35/04/3]
gi|422842554|gb|EKU27005.1| Ribonuclease III family protein [Catellicoccus marimammalium
M35/04/3]
Length = 132
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE Y R + + + + ++ V + Q L+++LL +++L+
Sbjct: 8 LNGLALAYVGDAVYEQYIRDYLVSQGKTRPNQLHHAATRFVSAKGQARLMKQLLEENWLT 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
EE + R G+N S + A Y A+ E L GYL+LT E + +
Sbjct: 68 EEEELIYRRGRNAKSHT--AAKNADITTYRIATGFEALVGYLHLTGQKEREQELCQWCID 125
Query: 236 NGS 238
G
Sbjct: 126 KGE 128
>gi|225387933|ref|ZP_03757697.1| hypothetical protein CLOSTASPAR_01705 [Clostridium asparagiforme
DSM 15981]
gi|225045976|gb|EEG56222.1| hypothetical protein CLOSTASPAR_01705 [Clostridium asparagiforme
DSM 15981]
Length = 159
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 122 LAYIGDCIYELYARRHFL-FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +YEL R + + + + + A+V+ Q L++ L + + EE
Sbjct: 33 LAYIGDAVYELMIRSKVINHGSMQVNKMHKHSAALVKASAQAQLIKALQEEL--TEEELA 90
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
+ G+N SA + A Y A+ LE L G+L+LT RL +++S+
Sbjct: 91 AYKRGRNAKSAT--MAKHATMIDYRMATGLEALVGWLFLTEQYARLVELVSR 140
>gi|401564266|ref|ZP_10805170.1| ribonuclease III domain protein [Selenomonas sp. FOBRC6]
gi|400188983|gb|EJO23108.1| ribonuclease III domain protein [Selenomonas sp. FOBRC6]
Length = 166
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 102 RWLPNPPKVGKPRSVF---NAAS-----LAYIGDCIYELYARRHFLFPPLSIEEYNNRVM 153
R + P + G R+ + +AAS LAY+GD + LY R LS E+ + +
Sbjct: 11 RMMFLPDEAGNIRTRYEDVDAASVHPLVLAYVGDAYFHLYVRMRL----LSYEQAQVQAL 66
Query: 154 AVVRCETQDALLQKLLN---DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSL 210
+ AL Q L+ EE+ + R +N S R+ A A Y+ ++
Sbjct: 67 HAFSAQIVSALWQARAYRGISEMLTEEEQTIYRRARNTKSHAPRS---ASVADYHTSTGF 123
Query: 211 ETLAGYLYLTNA-NRLEDV 228
E L G LY+ RLE++
Sbjct: 124 EALLGSLYIRGERERLEEI 142
>gi|121535686|ref|ZP_01667490.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
gi|121305717|gb|EAX46655.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
Length = 128
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
LS E+D+VR G+N A R+ A Y ++ ETL GYL L+ + RL ++M K
Sbjct: 47 LSEAEQDLVRRGRNASKAAPRS---ASVGEYRHSTGFETLLGYLLLSKQHERLYEIMDK 102
>gi|255654141|ref|ZP_05399550.1| hypothetical protein CdifQCD-2_00252 [Clostridium difficile
QCD-23m63]
gi|296449820|ref|ZP_06891587.1| ribonuclease III [Clostridium difficile NAP08]
gi|296877884|ref|ZP_06901904.1| ribonuclease III [Clostridium difficile NAP07]
gi|296261307|gb|EFH08135.1| ribonuclease III [Clostridium difficile NAP08]
gi|296431081|gb|EFH16908.1| ribonuclease III [Clostridium difficile NAP07]
Length = 137
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LAY+GD +YE Y R H + + + +A+ + + + L+ EE +
Sbjct: 20 LAYLGDTVYETYIREHLIRQNTQKKVNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKI 79
Query: 182 VRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
+ G+N S NT K A Y A+ E L GYLYL N RL+ +++K
Sbjct: 80 YKRGRNQKS-NTSPK-NADIIDYKHATGFEALVGYLYLNNEIERLQYIINK 128
>gi|168071075|ref|XP_001787045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162659850|gb|EDQ48141.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 315
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 118 NAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N+ +LAY+GD + E+Y RRH L+ + + + V + Q ++ LL + S
Sbjct: 254 NSLALAYMGDAVLEIYVRRHLLYSGKVKPNQLHREATRYVSAKGQAKVVHYLLEKGFFSE 313
Query: 177 EE 178
EE
Sbjct: 314 EE 315
>gi|355622057|ref|ZP_09046488.1| hypothetical protein HMPREF1020_00567 [Clostridium sp. 7_3_54FAA]
gi|354823163|gb|EHF07501.1| hypothetical protein HMPREF1020_00567 [Clostridium sp. 7_3_54FAA]
Length = 156
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 121 SLAYIGDCIYELYARRHFLFPP--LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
+LAY+GD +YEL A R F+ + + + + +V+ E Q + + + L+ EE
Sbjct: 26 ALAYLGDAVYEL-AIRTFVMNHGNTQVNKMHKKTAGLVKAEAQANFYK--VLEEELTEEE 82
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-----ANRLEDVMSKLG 233
+ V R G+N S + A Y A+ E L GYLYLT A L + KLG
Sbjct: 83 KAVYRRGRNAKSVT--MAKHATMKDYRMATGFEALMGYLYLTEQMERMAELLGHGLKKLG 140
>gi|323483932|ref|ZP_08089307.1| RNase3 domain-containing protein [Clostridium symbiosum WAL-14163]
gi|323693472|ref|ZP_08107681.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673]
gi|323402770|gb|EGA95093.1| RNase3 domain-containing protein [Clostridium symbiosum WAL-14163]
gi|323502479|gb|EGB18332.1| cysteine-tRNA ligase [Clostridium symbiosum WAL-14673]
Length = 156
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 121 SLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
+LAY+GD +YEL A R F+ + + + + +V+ E Q + + + L+ EE
Sbjct: 26 ALAYLGDAVYEL-AIRTFVMNHGNTQVNKMHKKTAGLVKAEAQANFYK--VLEEELTEEE 82
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-----ANRLEDVMSKLG 233
+ V R G+N S + A Y A+ E L GYLYLT A L + KLG
Sbjct: 83 KAVYRRGRNAKSVT--MAKHATMKDYRMATGFEALMGYLYLTEQMERMAELLGHGLKKLG 140
>gi|374339885|ref|YP_005096621.1| hypothetical protein Marpi_0907 [Marinitoga piezophila KA3]
gi|372101419|gb|AEX85323.1| hypothetical protein Marpi_0907 [Marinitoga piezophila KA3]
Length = 140
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIE-------EYNNRVMAVVRCETQDALLQKLLNDSY 173
+ AYIGD + LY F I+ +N + Q ++ +L
Sbjct: 25 TFAYIGDAVLNLY------FINYIIDNGRKKAGRLHNETKNYISASAQSKIVDQL--KDV 76
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL-TNANRLEDVMSK 231
+ EE D+ + G N A K+R Y +A++ ET+ GYL+L + RL D++ K
Sbjct: 77 FTEEEFDIYKRGLNSKGA----KKRGNDPEYRKATAFETVIGYLFLKKDYIRLNDILEK 131
>gi|293400416|ref|ZP_06644562.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373453474|ref|ZP_09545366.1| hypothetical protein HMPREF0984_02408 [Eubacterium sp. 3_1_31]
gi|291306816|gb|EFE48059.1| cysteine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371963572|gb|EHO81123.1| hypothetical protein HMPREF0984_02408 [Eubacterium sp. 3_1_31]
Length = 128
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS----IEEYNNRVMAVVRCETQDALLQKLLNDS 172
+N SLAY+GD + LY R L +++++ A V + Q L +L +
Sbjct: 6 YNGTSLAYMGDAVMSLYVRELLLSKGYQKSKDLQKFSE---AWVSAKAQAGFLNQLETEG 62
Query: 173 YLSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYL 219
+ + EE +V G+N N ++K + A Y +A+ LE + G+LYL
Sbjct: 63 FFTEEEWAIVLRGRNT---NPKSKAKNADVITYRKATGLEAVFGWLYL 107
>gi|429735348|ref|ZP_19269316.1| RNase3 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
gi|429159159|gb|EKY01677.1| RNase3 domain protein [Selenomonas sp. oral taxon 138 str. F0429]
Length = 155
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 107 PPKVGKPRSVF---NAAS-----LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRC 158
P + G R+ + +AAS LAY+GD + LY R LS E+ + +
Sbjct: 5 PDEAGNIRTRYEDVDAASVHPLVLAYVGDAYFHLYVRMRL----LSYEQAQVQALHAFSA 60
Query: 159 ETQDALLQKLLN---DSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAG 215
+ AL Q L+ EE+ + R +N S R+ A A Y+ ++ E L G
Sbjct: 61 QIVSALWQARAYRGISEMLTEEEQTIYRRARNTKSHAPRS---ASVADYHTSTGFEALLG 117
Query: 216 YLYLTNA-NRLEDV 228
LY+ RLE++
Sbjct: 118 SLYIRGERERLEEI 131
>gi|338813807|ref|ZP_08625891.1| ribonuclease III [Acetonema longum DSM 6540]
gi|337274201|gb|EGO62754.1| ribonuclease III [Acetonema longum DSM 6540]
Length = 164
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 109 KVGKPRSV--FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQ 166
K GKP + F+ LAY+GD + LY R L E RV+ E A +Q
Sbjct: 26 KAGKPLTAEQFSPLVLAYVGDAFFTLYVRTRL----LGAERQKVRVLHTYDAEIVSATMQ 81
Query: 167 KL----LNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA 222
L D LS E V++ G+N A + + A + Y ++ E + G L+L
Sbjct: 82 AFAVHRLEDE-LSETELAVLKRGRN---AKSTVPKSASVSDYRYSTGFEAVLGSLWLGGC 137
Query: 223 N-RLEDVMSK 231
RL ++ K
Sbjct: 138 QERLLELAGK 147
>gi|342215234|ref|ZP_08707888.1| hypothetical protein HMPREF9200_0210 [Veillonella sp. oral taxon
780 str. F0422]
gi|341588731|gb|EGS32107.1| hypothetical protein HMPREF9200_0210 [Veillonella sp. oral taxon
780 str. F0422]
Length = 141
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
LAYIGD +Y L+ R + ++ + ++ V + + + Q +LQ L + L+ EE
Sbjct: 26 LAYIGDGVYTLFIRNRVVETGITKTQILHDVVTSFINAKAQAKVLQAL--EPTLTEEELL 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
V + +N +N + A Y +++ E L GY Y
Sbjct: 84 VAKRARN---SNVHVPKSASVQEYRMSTAFEALLGYTY 118
>gi|225018868|ref|ZP_03708060.1| hypothetical protein CLOSTMETH_02818 [Clostridium methylpentosum
DSM 5476]
gi|224948338|gb|EEG29547.1| hypothetical protein CLOSTMETH_02818 [Clostridium methylpentosum
DSM 5476]
Length = 113
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 125 IGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVR 183
+GD ++EL R + + + + + V C T + LL D +L+ EE D+ R
Sbjct: 1 MGDAVFELLVRERITAQGSMPVNKLHQASVKYV-CATAQSRAIDLLTD-HLTEEEADIFR 58
Query: 184 WGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYL 219
G+N N + A Y A+ LE L GYLYL
Sbjct: 59 RGRNTHGNNV--PKNANPKEYRAATGLEALFGYLYL 92
>gi|294793810|ref|ZP_06758947.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44]
gi|294455380|gb|EFG23752.1| cysteine--tRNA ligase [Veillonella sp. 3_1_44]
Length = 158
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+A LAYIGD +Y +Y R + ++ ++ + V + ++Q +L ++ N +
Sbjct: 39 DAVMLAYIGDAVYSMYVRERVVQMNITKVQILHTIVTEFICAKSQAKVLLEIENT--FTE 96
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVMSK 231
+E+ + R +N +N + + Y +++ E + G+LY T + RL+ ++ +
Sbjct: 97 DEQAIARRARN---SNVNVPKNSTVQEYRSSTAFEAVLGFLYETRQDERLQHILGQ 149
>gi|257439636|ref|ZP_05615391.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257197903|gb|EEU96187.1| RNase3 domain protein [Faecalibacterium prausnitzii A2-165]
Length = 150
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYAR----RHFLFPPLSIEEYNNRVMAVVRCETQ 161
N + PR + N +LA++GD + EL R RH +S + N + V Q
Sbjct: 18 NESETIDPREL-NPLALAFVGDSVLELLVRTRLARHH---RMSAGKLNVEKVKYVSARAQ 73
Query: 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT- 220
++ L + + EE V + G+N A+ + A Y ++ E L G+LYLT
Sbjct: 74 --FREEQLLEPLFTEEELAVFKRGRNASKASV--AKHASPEEYRASTGFECLLGWLYLTG 129
Query: 221 NANRLEDVMSKL 232
R+E++ L
Sbjct: 130 QMARVEELFDAL 141
>gi|340755205|ref|ZP_08691902.1| hypothetical protein FSEG_00304 [Fusobacterium sp. D12]
gi|373112735|ref|ZP_09526962.1| hypothetical protein HMPREF9466_00995 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|419840314|ref|ZP_14363706.1| RNase3 domain protein [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421499411|ref|ZP_15946455.1| ribonuclease III domain protein [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313685862|gb|EFS22697.1| hypothetical protein FSEG_00304 [Fusobacterium sp. D12]
gi|371654875|gb|EHO20236.1| hypothetical protein HMPREF9466_00995 [Fusobacterium necrophorum
subsp. funduliforme 1_1_36S]
gi|386908346|gb|EIJ73043.1| RNase3 domain protein [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402269664|gb|EJU18988.1| ribonuclease III domain protein [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 128
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++E R +++ I N +V V + Q Q L + LS EE+
Sbjct: 13 ALAYLGDTVWETQIRLYWVKKGFHISHLNYQVKQFVNAKAQSRYYQILSVE--LSEEEKA 70
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232
++R KN G + + Y A+ E + G +L N ++E+ +++
Sbjct: 71 IMRRAKNAGIRS--FPKSCSNQEYREATGFEAIIGAWFLQGNLEKIENFRNRI 121
>gi|329121963|ref|ZP_08250575.1| hypothetical protein HMPREF9083_1037 [Dialister micraerophilus DSM
19965]
gi|327467261|gb|EGF12764.1| hypothetical protein HMPREF9083_1037 [Dialister micraerophilus DSM
19965]
Length = 158
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 108 PKVGKPRSVF--------NAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRC 158
++GK ++V +A +LAY+GD + + R + + ++ N+ M+ V
Sbjct: 15 ERLGKQKTVLTEQDCFSMDALTLAYMGDVCWSHFIRNQLIATGIYHVQVLNDISMSAVSA 74
Query: 159 ETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY 218
Q A++ L D + ER++ + K + N+ + A Y +++ E + GYLY
Sbjct: 75 RKQ-AVIMNDLRDLF---SEREI-KVAKRARNTNSTVPKSATVEEYRESTAFEGVLGYLY 129
Query: 219 LT-NANRLEDVMSK 231
L+ RL +M K
Sbjct: 130 LSGQTERLNFIMEK 143
>gi|372325687|ref|ZP_09520276.1| Ribonuclease III family protein [Oenococcus kitaharae DSM 17330]
gi|366984495|gb|EHN59894.1| Ribonuclease III family protein [Oenococcus kitaharae DSM 17330]
Length = 134
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
FN SLA+IGD + EL R + L L+ + + R V + L L + L+
Sbjct: 8 FNGLSLAFIGDAVDELKIRTYLLSTGLTKVNDLQKRSKEFVAAKAHAKLYFLLEEEHILT 67
Query: 176 AEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
EE ++ + G+N ++ TK + A Y ++ +E + GYLYL N RL+ +++
Sbjct: 68 EEETEIYKRGRN---SHPHTKAKNTDFATYQISTGVEAVLGYLYLKNDQKRLDQIIN 121
>gi|340758452|ref|ZP_08695039.1| hypothetical protein FVAG_02866 [Fusobacterium varium ATCC 27725]
gi|251836765|gb|EES65299.1| hypothetical protein FVAG_02866 [Fusobacterium varium ATCC 27725]
Length = 126
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQK---LLNDSYLSAEE 178
LAY+GD ++EL R++++ L+++ N RV V + Q L ++ LL + Y
Sbjct: 14 LAYLGDAVWELCIRKYWISKGLNLQNLNKRVKECVNAKKQSVLYKEIVPLLEEKYQML-- 71
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
G + N +T ++ + + Y A++ E L Y+
Sbjct: 72 ------GNRAKNGNIKTFPKSCSVLEYKEATAFEALIAGFYV 107
>gi|433461671|ref|ZP_20419277.1| ribonuclease MrnC [Halobacillus sp. BAB-2008]
gi|432189843|gb|ELK46908.1| ribonuclease MrnC [Halobacillus sp. BAB-2008]
Length = 135
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 121 SLAYIGDCIYELYARRHFL----FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
+LAY+GD +YELY R + L P + + R ++ V +Q ++ L+
Sbjct: 13 ALAYMGDSVYELYVREYLLDKGEVQPQHLHKAAVRFVSAV---SQAQSVRAWQEAEILTE 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVM 229
EE V+R G+N S + + Y +++ E + G+LYL+ RLE+++
Sbjct: 70 EEEGVLRRGRNAKSGS--VPKSTNVQTYRYSTAFEAVLGFLYLSGQKQRLEELV 121
>gi|258645875|ref|ZP_05733344.1| ribonuclease III [Dialister invisus DSM 15470]
gi|260403248|gb|EEW96795.1| ribonuclease III [Dialister invisus DSM 15470]
Length = 155
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 106 NPPKVGKPRSVF--NAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQD 162
P++G+ + +F +A +LAYIGD + + R+ + + +++ N+ +V Q
Sbjct: 20 GSPELGE-QDIFAMDALTLAYIGDVCWSFFVRKALIDTGIYNVQILNSLASEMVSARQQS 78
Query: 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-N 221
+L ++ LS E V + +N S ++ A Y +++ E L GYLYL+
Sbjct: 79 RILFEI--KELLSDRELKVCKRARNTHSTVPKS---ATVEEYRESTAFEGLLGYLYLSRQ 133
Query: 222 ANRLEDVMSK 231
RL+ +M +
Sbjct: 134 KERLDFLMGR 143
>gi|304436604|ref|ZP_07396573.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370300|gb|EFM23956.1| ribonuclease III [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 166
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDS---YLSAEE 178
LAYIGD + LY R LS E+ + + + A+ Q L+ EE
Sbjct: 39 LAYIGDAYFHLYVRMRL----LSYEQTQVQGLHAFSAQIVSAVWQARAYRGIAPMLTEEE 94
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDV 228
+ + R +N S R+ A A Y+ ++ E L G LY+ + RLE++
Sbjct: 95 QTIYRRARNTKSHAPRS---ASVADYHASTGFEALLGSLYIRHETERLEEI 142
>gi|338729886|ref|YP_004659278.1| hypothetical protein Theth_0076 [Thermotoga thermarum DSM 5069]
gi|335364237|gb|AEH50182.1| hypothetical protein Theth_0076 [Thermotoga thermarum DSM 5069]
Length = 135
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 120 ASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
++LAYIGD + LY R + +++ + +V V + Q +++L+ LS +E
Sbjct: 14 STLAYIGDAVCSLYCRIENV-KYVNVSTIHQKVTQQVSRDGQAKGFERILD--LLSEDEL 70
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGF 234
V + N +A KR Y ++++ E + GYLYL + K+ F
Sbjct: 71 SVAKRAFNSKAA----KRHGNDLFYRKSTAFEAVIGYLYLAGKTERMYYLLKIAF 121
>gi|164686506|ref|ZP_02210534.1| hypothetical protein CLOBAR_00071 [Clostridium bartlettii DSM
16795]
gi|164604517|gb|EDQ97982.1| RNase3 domain protein [Clostridium bartlettii DSM 16795]
Length = 137
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVV--RCETQDALLQKLLNDSYLSAEER 179
LAY+GD +YE Y R H + ++ + N +A+ + + Q ++ +L ++ + EE
Sbjct: 20 LAYLGDTVYESYIREHLIRQNINRKVNNLHKLAIQYSKAKAQATIIHELEDEL--TEEEM 77
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
+ + G+N S + A Y A+ E L GYLYL+ + RLE ++ K
Sbjct: 78 KIFKRGRNQKSHT--APKNADIIDYKYATGFEALIGYLYLSEDKERLEYIVKK 128
>gi|373454260|ref|ZP_09546132.1| hypothetical protein HMPREF9453_00301 [Dialister succinatiphilus
YIT 11850]
gi|371935993|gb|EHO63730.1| hypothetical protein HMPREF9453_00301 [Dialister succinatiphilus
YIT 11850]
Length = 125
Score = 37.0 bits (84), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALL---QKLLNDSY 173
+A +LAYIGD + + R+ + + +++ N+ +V Q +L ++LLN+
Sbjct: 2 DALTLAYIGDACWSFFIRKALIDTGIYNVQILNSLASEIVSARWQSRILFEIRELLNERE 61
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSK 231
L +R +N S + A Y +++ E L GYLYL+ RL+ ++ K
Sbjct: 62 LKVAKR-----ARNTSS---HVPKSATVEEYRESTAFEALLGYLYLSGQKQRLDFILEK 112
>gi|373499282|ref|ZP_09589772.1| hypothetical protein HMPREF0402_03645 [Fusobacterium sp. 12_1B]
gi|371959123|gb|EHO76817.1| hypothetical protein HMPREF0402_03645 [Fusobacterium sp. 12_1B]
Length = 127
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQK---LLNDSYLSAEE 178
LAY+GD ++EL R++++ L+++ N RV V + Q L ++ LL + Y
Sbjct: 14 LAYLGDAVWELCIRKYWISKGLNLQNLNKRVKECVNAKRQSVLYKEVVPLLEEKYQML-- 71
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
G + N +T ++ + + Y A++ E L Y+
Sbjct: 72 ------GNRAKNGNIKTFPKSCSVLEYKEATAFEALIAGFYV 107
>gi|404369305|ref|ZP_10974646.1| hypothetical protein FUAG_03042 [Fusobacterium ulcerans ATCC 49185]
gi|313690692|gb|EFS27527.1| hypothetical protein FUAG_03042 [Fusobacterium ulcerans ATCC 49185]
Length = 127
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQK---LLNDSYLSAEE 178
LAY+GD ++EL R++++ L+++ N RV V + Q L ++ LL + Y
Sbjct: 14 LAYLGDAVWELCIRKYWISKGLNLQNLNKRVKECVNAKRQSVLYKEIVPLLEEKYQML-- 71
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
G + N +T ++ + + Y A++ E L Y+
Sbjct: 72 ------GNRAKNGNIKTFPKSCSVLEYKEATAFEALIAGFYV 107
>gi|363900514|ref|ZP_09327019.1| hypothetical protein HMPREF9625_01679 [Oribacterium sp. ACB1]
gi|395209080|ref|ZP_10398245.1| ribonuclease III domain protein [Oribacterium sp. ACB8]
gi|361956388|gb|EHL09706.1| hypothetical protein HMPREF9625_01679 [Oribacterium sp. ACB1]
gi|394705681|gb|EJF13207.1| ribonuclease III domain protein [Oribacterium sp. ACB8]
Length = 139
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 121 SLAYIGDCIYELYARRHFL--FPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
SLAY+GD IY+ + R + F S+ + N++ +V + Q +++ L L+ EE
Sbjct: 17 SLAYVGDSIYDFFIRDRLIRDFSG-SLNKINSKKKDLVCAKAQSDIMEYYLEKELLTEEE 75
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVM 229
V R +N S +R+K + Y RA+ E + GYL+ N RL+ +M
Sbjct: 76 LSVYRRARNHKS-QSRSK-NSDIGDYRRATGFEAVLGYLHYQNEGERLQRLM 125
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,822,418,567
Number of Sequences: 23463169
Number of extensions: 153989323
Number of successful extensions: 360036
Number of sequences better than 100.0: 974
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 831
Number of HSP's that attempted gapping in prelim test: 359076
Number of HSP's gapped (non-prelim): 996
length of query: 254
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 115
effective length of database: 9,097,814,876
effective search space: 1046248710740
effective search space used: 1046248710740
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)