BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025342
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74327|MRNC_SYNY3 Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=mrnC PE=3 SV=1
Length = 143
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++ELY R +LFPP I +++ RV+A VR E Q +L LL L+ E++
Sbjct: 29 ALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQAQILTTLLPQ--LTDPEKE 86
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFTNGS 238
VR G+N A T T RRA +Y AS LETL GYLYL +A RL+++++ + + +
Sbjct: 87 WVRRGRN---AATSTSRRANPELYQAASGLETLLGYLYLRDARRLDELLALIELPDAA 141
>sp|Q8DLQ0|MRNC_THEEB Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1)
GN=mrnC PE=3 SV=1
Length = 151
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 106 NPPKVGKPRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALL 165
PP + P A+LAY GD +YEL+ R FL PP I Y+ +V+A VR E+Q +
Sbjct: 11 QPPTI--PAHQLPPAALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYM 68
Query: 166 QKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRL 225
L Y + ER + R G+N + +R A +Y +A+ E L GYLYLTN RL
Sbjct: 69 DFLWE--YCTETERSIFRQGRNAAADG---PKRVAAKIYRQATGFEALLGYLYLTNPQRL 123
Query: 226 EDVMSKLG 233
+++ L
Sbjct: 124 QEIFQLLA 131
>sp|Q05370|MRNC_SYNP1 Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC
PE=3 SV=1
Length = 146
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY GD +YEL+ R FL PP I Y+++V+A VR E+Q + L + +A E
Sbjct: 26 ALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDILW--PHCTAAELT 83
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
+ R G+N A +R A +Y +A+ E L GYLYLT+ RL+DV++ L
Sbjct: 84 IFRQGRN---AAADGPKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132
>sp|Q7NDQ2|MRNC_GLOVI Mini-ribonuclease 3 OS=Gloeobacter violaceus (strain PCC 7421)
GN=mrnC PE=3 SV=2
Length = 135
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD ++EL+ R L PP ++ + +A VR Q L L +L+ EE D
Sbjct: 13 ALAYLGDAVWELHVRTRVLLPPRRLQWLHGDTVACVRASAQAKLATCL--SPHLTVEEAD 70
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVM 229
+R G+N G RR A Y A++ E L GYL+L + +RL ++
Sbjct: 71 WLRRGRNAGGT---VPRRLDPATYRLATAFEALLGYLFLADRDRLGVIL 116
>sp|Q5N0K8|MRNC_SYNP6 Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=mrnC PE=3 SV=2
Length = 138
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERD 180
+LAY+GD +YE + R L P + + V+ VR E Q LL LL +AEE +
Sbjct: 27 ALAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRAERQAELLVSLLPLL--TAEELE 84
Query: 181 VVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+VR G+N A R RR Y +A+ LETL GYLYL +
Sbjct: 85 IVRRGRN---AAGRVPRRLTGEYYQQATGLETLLGYLYLCD 122
>sp|O31418|MRNC_BACSU Mini-ribonuclease 3 OS=Bacillus subtilis (strain 168) GN=mrnC PE=1
SV=1
Length = 143
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 118 NAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
N +LAYIGD I+E+Y R H L + + + + +V ++Q +L L N S+ +
Sbjct: 14 NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTE 73
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKL 232
EE V++ G+N S T + Y +++ E L GYL+L + E+ +S+L
Sbjct: 74 EEEAVLKRGRNAKSGT--TPKNTDVQTYRYSTAFEALLGYLFL---EKKEERLSQL 124
>sp|Q890M5|MRNC_CLOTE Mini-ribonuclease 3 OS=Clostridium tetani (strain Massachusetts /
E88) GN=mrnC PE=3 SV=1
Length = 151
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 122 LAYIGDCIYELYARRHFLFP--PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
LAYIGD +YE++ R + + + + + + + V+ + Q ++++ YL+ EE
Sbjct: 23 LAYIGDAVYEIFIRTYIISKNKDTCVNKLHKKTIQFVKADAQSYFIREI--QKYLNEEEI 80
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNAN-RLEDVM 229
V + G+N S NT K A Y A+ ET+ GYLYL N + RLE++M
Sbjct: 81 KVFKRGRNTKS-NTSAKN-ASIQDYRMATGFETVIGYLYLLNEDERLEEIM 129
>sp|Q2RFM4|MRNC_MOOTA Mini-ribonuclease 3 OS=Moorella thermoacetica (strain ATCC 39073)
GN=mrnC PE=3 SV=1
Length = 127
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 121 SLAYIGDCIYELYARRHFLF-PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YEL R H + P E+ + + VR Q ++ L + YL+ E+
Sbjct: 11 ALAYVGDAVYELLVRAHLVGRGPAKPEQLHREALKYVRATAQARVVPAL--EEYLTPAEK 68
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
D++R G+N + R A A Y+ +++LE+L GYLYL
Sbjct: 69 DILRRGRNARPGH--LPRTAAPAEYHSSTALESLLGYLYLQG 108
>sp|Q8DQS7|MRNC_STRR6 Mini-ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=mrnC PE=3 SV=1
Length = 128
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
++ N +LA+ GD +Y +Y RRH + ++ + + V + Q L+ +L +
Sbjct: 5 NLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQV 64
Query: 174 LSAEERDVVRWGKNVGSANTRTK-RRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMS 230
L+ +E ++ + G+N N+ TK + A Y ++ E + GYL++T N RLE ++S
Sbjct: 65 LTEKEEEIYKRGRN---TNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS 120
>sp|Q839V4|MRNC_ENTFA Mini-ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=mrnC PE=3 SV=1
Length = 132
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMA-VVRCETQDALLQKLLNDSYLS 175
N +LAY+GD IYE+Y R + + + +R+ V + Q +L+Q +L L+
Sbjct: 7 LNGLALAYVGDAIYEIYIRDYLVSLGQTKPNVLHRMATHYVSAKAQASLMQAMLAGEMLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS---- 230
EE + + G+N S + A Y A+ E+L GYL+LT RLE++++
Sbjct: 67 EEEEVMYKRGRNAKSHT--FAKNADVTTYRVATGFESLMGYLHLTQQKERLEELINWCIK 124
Query: 231 KLGFTN 236
K+G TN
Sbjct: 125 KVGETN 130
>sp|Q250Q5|MRNC_DESHY Mini-ribonuclease 3 OS=Desulfitobacterium hafniense (strain Y51)
GN=mrnC PE=3 SV=1
Length = 157
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 113 PRSV--FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLL 169
PRS NA +LAY+GD +YEL+ R H L + E + VR TQ LL +L
Sbjct: 2 PRSWQEMNALTLAYLGDVVYELWVRTHLLNNGYEKVNELHRLATQYVRAGTQAKLLHHIL 61
Query: 170 NDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221
+L +E VV G+N + ++ Y A+ E L GY LT
Sbjct: 62 --PHLDEQELSVVHRGRNAKGGHPKS---TDVVTYRYATGFEALVGYWQLTG 108
>sp|Q67JQ0|MRNC_SYMTH Mini-ribonuclease 3 OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=mrnC PE=3 SV=1
Length = 130
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 121 SLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
+LAY+GD +YE + R L + + + + + V+ Q A+L L+ L+ +E+
Sbjct: 13 TLAYLGDALYEAFVRERLLERGYVRVNDLHRHALRYVQATAQAAILHHLM--PALTEQEQ 70
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
DVVR G+N + + A A Y ++ E L GYLYL A RL +V+
Sbjct: 71 DVVRRGRN--AKGHGAPKSADPAEYAASTGFEALVGYLYLAGQAERLSEVLQ 120
>sp|Q81J58|MRNC_BACCR Mini-ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=mrnC PE=1 SV=1
Length = 135
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFP-PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N+ +LAY+GD +YE Y R H L + + + + V + Q ++ LL ++L+
Sbjct: 7 LNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 66
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLY-LTNANRLEDVMSK 231
EE V+R G+N S + Y +++ E L GY + L N RL++++ K
Sbjct: 67 EEEEAVLRRGRNANSGT--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYK 121
>sp|A9NEJ0|MRNC_ACHLI Mini-ribonuclease 3 OS=Acholeplasma laidlawii (strain PG-8A)
GN=mrnC PE=3 SV=1
Length = 125
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPL-SIEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD YEL R++ + + ++ + + + + E Q +++ L+ LS
Sbjct: 1 MNGLALAYLGDAYYELEIRKYLITQGIRNVGKLHTEKVRLASNEAQASIMNYFLSLEILS 60
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSKLGFT 235
EE D + G+N S N+R ++ Y +A+ E+L GYL + + R +D+++ LG T
Sbjct: 61 EEEIDAYKKGRNK-SHNSR--KQMDMVTYQQATGFESLIGYLSIIDEQRAKDLIN-LGIT 116
>sp|Q2G2M4|MRNC_STAA8 Mini-ribonuclease 3 OS=Staphylococcus aureus (strain NCTC 8325)
GN=mrnC PE=3 SV=1
Length = 134
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 116 VFNAASLAYIGDCIYELYARRHFLF----PPLSIEEYNNRVMAVVRCETQDALLQKLLND 171
+ N +LAY+GD + + Y R + + P + + + + V ++Q L+ L+
Sbjct: 11 LLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKK---YVSAKSQAQTLEYLMEQ 67
Query: 172 SYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMS 230
+ + EE D+++ G+N S +T+ K Y ++S++E + G+LYL RLE +++
Sbjct: 68 EWFTDEEMDILKRGRNAKS-HTKAK-NTDVQTYRKSSAIEAVIGFLYLEKREERLEALLN 125
Query: 231 KL 232
K+
Sbjct: 126 KI 127
>sp|F9UL76|MRNC_LACPL Mini-ribonuclease 3 OS=Lactobacillus plantarum (strain ATCC BAA-793
/ NCIMB 8826 / WCFS1) GN=mrnC PE=3 SV=1
Length = 136
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLS-IEEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R+H + + + ++ V + Q AL++++ + L+
Sbjct: 8 LNGIALAYLGDAVYEPFIRQHLIESGFTKATKLHHHATHYVSAKAQAALIERMQAEEVLT 67
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDV 228
E DV + G+N S + + Y ++ E + GYL LT A+R+ ++
Sbjct: 68 PTEVDVFKRGRNAKSHT--SAKHTDVVTYRISTGFEAVFGYLQLTQQADRIAEL 119
>sp|B0K5F7|MRNC_THEPX Mini-ribonuclease 3 OS=Thermoanaerobacter sp. (strain X514) GN=mrnC
PE=3 SV=2
Length = 142
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 122 LAYIGDCIYELYARRHFLFP---PLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEE 178
LA+IGD +Y LY R + P++ + + V+ + Q ++++ + LS EE
Sbjct: 28 LAFIGDAVYSLYIRTKIVAQKNQPVNF--LHKETVKYVKAKAQAESVKRIYD--LLSEEE 83
Query: 179 RDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMS 230
+D+VR G+N+ S NT T + Y A+ E L GYLYL RL++++
Sbjct: 84 KDIVRRGRNMKS-NT-TPKGVEVQAYRYATGFEALLGYLYLAGEFERLKNILE 134
>sp|C5CF30|MRNC_KOSOT Mini-ribonuclease 3 OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=mrnC PE=3 SV=1
Length = 145
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 121 SLAYIGDCIYELYARRHFLFPPLSIEEY-NNRVMAVVRCETQDALLQKLLNDSYLSAEER 179
SL+++GD +Y LY R L Y +N + V + Q L+ + + +LS EER
Sbjct: 21 SLSFVGDAVYSLYFRIKTLRSAKRRTGYQHNLTLLYVEAKGQRKALEVI--EKFLSEEER 78
Query: 180 DVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSKL 232
+VR G N A ++R Y A++LE L GYL+L RLE+++ K+
Sbjct: 79 IIVRRGYNSRGA----RKRGDDENYKCATALEALVGYLFLKGRYRRLEELLEKV 128
>sp|Q8YAB0|MRNC_LISMO Mini-ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=mrnC PE=3 SV=1
Length = 136
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSYLS 175
N +LAY+GD +YE + R + L + + + V + Q L+ ++ + +L+
Sbjct: 10 LNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLT 69
Query: 176 AEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLEDVMSK 231
EE + + G+N S G Y+ ++S E + GYLYL RL++ M K
Sbjct: 70 EEEDRIAKRGRNAKSYTVPKNTDPG--TYSMSTSFEAVLGYLYLAGEMERLQEWMEK 124
>sp|Q8RIL0|MRNCL_FUSNN Mini-ribonuclease 3-like protein OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=mrnCL PE=1 SV=1
Length = 129
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 117 FNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSA 176
++ LA++GD I+EL R+++L +I N V A V + Q + +K++ND
Sbjct: 13 YSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKIIND---LD 69
Query: 177 EERDVVRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
EE V+ GK ++N +T R+ + Y A++LE + G +YL
Sbjct: 70 EEFKVI--GKRAKNSNIKTFPRSCTVMEYKEATALEAIIGAMYL 111
>sp|E3H9T2|MRNCL_ILYPC Mini-ribonuclease 3-like protein OS=Ilyobacter polytropus (strain
DSM 2926 / CuHBu1) GN=mrnCL PE=3 SV=1
Length = 127
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 122 LAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDV 181
LAY+GD ++EL R +F+ I N +V +V + Q + + +L D L + + V
Sbjct: 14 LAYLGDAVWELTVREYFVEKGYKINTMNKKVKKLVNAKAQSVIFKSILED--LDEDYKAV 71
Query: 182 VRWGKNVGSANTRTKRRAGAAV-YNRASSLETLAGYLYL 219
R KN +N ++ R+ + + Y A++ E L Y+
Sbjct: 72 ARRAKN---SNIKSFPRSCSIMEYREATAFEALIAAFYI 107
>sp|C0ZIF8|MRNC_BREBN Mini-ribonuclease 3 OS=Brevibacillus brevis (strain 47 / JCM 6285 /
NBRC 100599) GN=mrnC PE=3 SV=1
Length = 134
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 122 LAYIGDCIYELYARRHF----LFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAE 177
LA++GD Y R H L P + + NR V + Q +L L+ L E
Sbjct: 18 LAFLGDATYSHCVRYHLIAKGLVKPNQLHKAANRY---VSAKAQANVLLTLM--PTLPEE 72
Query: 178 ERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANR--LEDVMSKLGFT 235
E +VV+ G+N S ++ + A Y A++ E L GYLYL+ E V
Sbjct: 73 ELNVVKRGRNAKSGSS--AKNADIIDYRHATAFEALIGYLYLSGKEERIAEIVQQAFAIV 130
Query: 236 NGSS 239
G S
Sbjct: 131 EGES 134
>sp|Q9CEJ1|MRNC_LACLA Mini-ribonuclease 3 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=mrnC PE=3 SV=1
Length = 133
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 115 SVFNAASLAYIGDCIYELYARRHFLFPPLSI-EEYNNRVMAVVRCETQDALLQKLLNDSY 173
+ N +LAYIGD IYE++ R + L L+ V + Q ++ + +
Sbjct: 7 ELLNGIALAYIGDAIYEVFVREYLLDKGLTKPAMLQKNATKFVSAKAQAKIISAMDEVDF 66
Query: 174 LSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNA-NRLED 227
L+ E + G+N S T + Y ++ E + G L+LT RL++
Sbjct: 67 LTEYELTYFKRGRNAHSKT--TAKNTDVVTYRISTGFEAVVGILHLTQQKERLQE 119
>sp|P20964|OBG_BACSU GTPase ObgE OS=Bacillus subtilis (strain 168) GN=obg PE=1 SV=1
Length = 428
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 55 NKSDVAIAKPPTSTVTPTSTDQSVFDLLKHPTQGVVA 91
N D+ I PP + VT T Q + DL +H + V+A
Sbjct: 81 NADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIA 117
>sp|Q86WK6|AMGO1_HUMAN Amphoterin-induced protein 1 OS=Homo sapiens GN=AMIGO1 PE=1 SV=1
Length = 493
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 138 FLFPPLSIEE----YNNRVMAVVRCETQD-ALLQKLLNDSYLSAEE 178
FLF L + E YNN +MAV RC D A LQKL YLS +
Sbjct: 128 FLFSDLQVLEVLLLYNNHIMAVDRCAFDDMAQLQKL----YLSQNQ 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,892,718
Number of Sequences: 539616
Number of extensions: 3649980
Number of successful extensions: 9421
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 9351
Number of HSP's gapped (non-prelim): 82
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)