Query 025342
Match_columns 254
No_of_seqs 145 out of 452
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gsl_A Hypothetical protein; a 100.0 5.6E-39 1.9E-43 265.6 13.2 117 113-233 9-126 (137)
2 1u61_A Hypothetical protein; s 100.0 4.6E-37 1.6E-41 254.2 12.5 118 113-232 6-125 (138)
3 1o0w_A Ribonuclease III, RNAse 99.3 3.9E-12 1.3E-16 111.2 6.7 100 117-232 60-164 (252)
4 2nug_A Ribonuclease III, RNAse 99.3 9.8E-12 3.3E-16 106.2 8.2 95 118-232 35-134 (221)
5 2a11_A Ribonuclease III, RNAse 99.2 1.3E-11 4.4E-16 106.7 8.0 100 117-232 40-147 (242)
6 3o2r_A Ribonuclease III; struc 99.2 6.8E-11 2.3E-15 99.4 8.3 101 118-232 59-162 (170)
7 3n3w_A Ribonuclease III; nucle 99.1 1.8E-10 6.2E-15 101.1 7.0 101 118-232 59-162 (248)
8 3c4b_A Endoribonuclease dicer; 99.0 5E-10 1.7E-14 97.6 8.6 114 118-231 49-185 (265)
9 3rv1_A K. polysporus DCR1; RNA 97.8 2.9E-05 9.9E-10 69.1 7.0 102 118-232 128-235 (246)
10 3rv0_A K. polysporus DCR1; RNA 97.7 0.00012 4.1E-09 67.6 9.4 101 118-231 128-234 (341)
11 2qvw_A GLP_546_48378_50642; di 97.0 0.0027 9.2E-08 64.2 9.9 98 120-233 648-748 (756)
12 2qvw_A GLP_546_48378_50642; di 96.3 0.012 4E-07 59.6 9.2 96 118-232 333-432 (756)
13 4e9m_A Nucleotide-binding olig 34.4 11 0.00037 31.6 0.7 71 163-236 45-117 (144)
14 3ygs_P Procaspase 9; apoptosis 28.1 19 0.00063 27.0 1.0 68 163-231 25-92 (97)
15 2p1h_A APAF-1, apoptotic prote 27.3 14 0.00046 27.0 0.1 63 162-230 25-90 (94)
16 2lz1_A Nuclear factor erythroi 26.5 33 0.0011 26.8 2.1 21 168-188 51-75 (90)
17 3r8n_O 30S ribosomal protein S 26.2 45 0.0015 25.5 2.8 33 203-235 48-87 (88)
18 2nz7_A NOD1, caspase recruitme 24.3 62 0.0021 24.7 3.3 57 162-221 30-86 (98)
19 2vqe_O 30S ribosomal protein S 22.4 44 0.0015 25.5 2.2 33 203-235 49-88 (89)
20 1a32_A Ribosomal protein S15; 21.2 46 0.0016 25.4 2.0 24 212-235 64-87 (88)
No 1
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=100.00 E-value=5.6e-39 Score=265.56 Aligned_cols=117 Identities=24% Similarity=0.370 Sum_probs=106.6
Q ss_pred CCCCcChHHHHHHhhHHHHHHHHHHhhCCCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCC
Q 025342 113 PRSVFNAASLAYIGDCIYELYARRHFLFPPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSAN 192 (254)
Q Consensus 113 ~~~~~spLaLAYIGDAVYELyVR~~ll~~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~ 192 (254)
+.+++||+.|||||||||||+||++|+.++.++++||+.++++|+|++||.+++.|. ++|||+|.+++|||||+++++
T Consensus 9 ~~~~~~~~~LefLGDAVleL~vr~~L~~~~~~~g~L~k~~~~~V~a~aqa~~~~~l~--~~Lte~E~~~~rrGrna~~~~ 86 (137)
T 2gsl_A 9 DIRDYSGLELAFLGDAIWELEIRKYYLQFGYNIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKNSNIKT 86 (137)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHSHHHHHHHHHHHG--GGSCHHHHHHHHHHHC--CCS
T ss_pred ChhhcCHHHHHHhhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhCHHHHHHHHHHHH--HHhCHHHHHHHHhcccccCCC
Confidence 346899999999999999999999999866599999999999999999999999994 589999999999999999864
Q ss_pred CCCCCCCChhHHhhhhhHHHHHHHHhcCC-hhHHHHHHHHhC
Q 025342 193 TRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKLG 233 (254)
Q Consensus 193 t~~pKna~v~~YR~ATGFEALIGYLYLt~-~eRL~EL~~~lg 233 (254)
.|||+++.+||.|||||||||||||.+ .+|+++++..+.
T Consensus 87 --~~k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 87 --FPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVI 126 (137)
T ss_dssp --CCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCCCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 689999999999999999999999996 799999998754
No 2
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=100.00 E-value=4.6e-37 Score=254.19 Aligned_cols=118 Identities=29% Similarity=0.522 Sum_probs=108.9
Q ss_pred CCCCcChHHHHHHhhHHHHHHHHHHhhCCC-CChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCC
Q 025342 113 PRSVFNAASLAYIGDCIYELYARRHFLFPP-LSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSA 191 (254)
Q Consensus 113 ~~~~~spLaLAYIGDAVYELyVR~~ll~~~-~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~ 191 (254)
+.+++||+.|||||||||||+||+||+..+ .+.++||+.+.++|+|++||.+++.|++++.|+|||.+++|||||+++.
T Consensus 6 ~~~~~~~erLefLGDAVlel~vr~~L~~~~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~ 85 (138)
T 1u61_A 6 DAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSG 85 (138)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSS
T ss_pred chhhcCHHHHHHhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccC
Confidence 346899999999999999999999999754 6899999999999999999999999977789999999999999999875
Q ss_pred CCCCCCCCChhHHhhhhhHHHHHHHHhcCC-hhHHHHHHHHh
Q 025342 192 NTRTKRRAGAAVYNRASSLETLAGYLYLTN-ANRLEDVMSKL 232 (254)
Q Consensus 192 ~t~~pKna~v~~YR~ATGFEALIGYLYLt~-~eRL~EL~~~l 232 (254)
+ .+||+++.+||.|||||||||||||.+ .+|+++++..+
T Consensus 86 ~--~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~ 125 (138)
T 1u61_A 86 T--VPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 125 (138)
T ss_dssp C--CCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C--CCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 589999999999999999999999996 79999999764
No 3
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.28 E-value=3.9e-12 Score=111.21 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=77.4
Q ss_pred cChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCC--CCHHHHHHHHhhcCCCCCC
Q 025342 117 FNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSY--LSAEERDVVRWGKNVGSAN 192 (254)
Q Consensus 117 ~spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~--LTEEE~~IvRRGRNaks~~ 192 (254)
.+...|+||||||++++|+.+|+. +..+...|++....+|++++++.+...|--+++ +...|. ...||
T Consensus 60 ~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~--~~~~~------ 131 (252)
T 1o0w_A 60 ESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEE--KTGGR------ 131 (252)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHH--HTTGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhh--hcCCC------
Confidence 367999999999999999999984 456889999999999999999999887632112 223332 11111
Q ss_pred CCCCCCCChhHHhhhhhHHHHHHHHhcC-ChhHHHHHHHHh
Q 025342 193 TRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232 (254)
Q Consensus 193 t~~pKna~v~~YR~ATGFEALIGYLYLt-~~eRL~EL~~~l 232 (254)
..++..|++||||||++||. |.+++.+++..+
T Consensus 132 --------~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 132 --------DRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp --------GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred --------CCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24789999999999999999 588888877654
No 4
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.26 E-value=9.8e-12 Score=106.20 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=78.5
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
+-.-|+||||||++++|+.+++. +..+.+.||+....+|++++++.+...+--. +.+++|++..
T Consensus 35 ~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~--------~~l~~~~~~~------ 100 (221)
T 2nug_A 35 HYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELH--------KFIRIKRGKI------ 100 (221)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGG--------GTCBSCTTCC------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChH--------HhhccCCCcc------
Confidence 56899999999999999999985 3468899999999999999999999887322 3457887752
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcC-ChhH--HHHHHHHh
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLT-NANR--LEDVMSKL 232 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt-~~eR--L~EL~~~l 232 (254)
+ .+..|++||||||++||. |.++ +.+++..+
T Consensus 101 -~-----~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~ 134 (221)
T 2nug_A 101 -N-----ETIIGDVFEALWAAVYIDSGRDANFTRELFYKL 134 (221)
T ss_dssp -C-----HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -c-----chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 889999999999999999 4788 77766554
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1.3e-11 Score=106.74 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=77.8
Q ss_pred cChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHh---hcCCC--CCHHHHHHHHhhcCCC
Q 025342 117 FNAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKL---LNDSY--LSAEERDVVRWGKNVG 189 (254)
Q Consensus 117 ~spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~L---l~e~~--LTEEE~~IvRRGRNak 189 (254)
.+-..|+||||||++++|+.+++. +..+...||+....+|++++++.+...+ --.++ +...|.. ..||
T Consensus 40 ~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~--~~~~--- 114 (242)
T 2a11_A 40 PTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEAN--TGGA--- 114 (242)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHH--TTGG---
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhh--cCCC---
Confidence 466899999999999999999984 4568999999999999999999999988 21123 2332210 1111
Q ss_pred CCCCCCCCCCChhHHhhhhhHHHHHHHHhcC-ChhHHHHHHHHh
Q 025342 190 SANTRTKRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232 (254)
Q Consensus 190 s~~t~~pKna~v~~YR~ATGFEALIGYLYLt-~~eRL~EL~~~l 232 (254)
..++..|++||||||++||. |.+++.+++..+
T Consensus 115 -----------~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 115 -----------DKSSILADGMESLLGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp -----------GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----------CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 23788999999999999999 588988887765
No 6
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.16 E-value=6.8e-11 Score=99.36 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=75.5
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
+=-.|+||||||++++|+.+++. +..+..+|++....+|+.++++.+.+.+-=.++|.-........||
T Consensus 59 ~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~--------- 129 (170)
T 3o2r_A 59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGK--------- 129 (170)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGG---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCC---------
Confidence 34679999999999999999985 4568999999999999999999998887422343321111111111
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcC-ChhHHHHHHHHh
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt-~~eRL~EL~~~l 232 (254)
....-.|++||||||.+||. |.++..+++..+
T Consensus 130 -----~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~ 162 (170)
T 3o2r_A 130 -----EKPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (170)
T ss_dssp -----GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----CcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 12446899999999999999 588998887653
No 7
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.06 E-value=1.8e-10 Score=101.11 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=79.2
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
+=--|+||||||.+++|..+++. +..+...|++....+|+.++++.+...+-=+++|...+.....+||+.
T Consensus 59 ~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~------- 131 (248)
T 3n3w_A 59 NNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEK------- 131 (248)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGC-------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCC-------
Confidence 34679999999999999999984 446788899999999999999999988743346654444445555543
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcC-ChhHHHHHHHHh
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKL 232 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt-~~eRL~EL~~~l 232 (254)
.-..|++||||||.+||. |.++..+++..+
T Consensus 132 -------~~~lad~fEAliGAiyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 132 -------PSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (248)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHCChHHHHHHHHHH
Confidence 225899999999999999 588888877654
No 8
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.04 E-value=5e-10 Score=97.58 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=80.2
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCC---HH----HHHHHH--hhc
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLS---AE----ERDVVR--WGK 186 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LT---EE----E~~IvR--RGR 186 (254)
+=.-|+||||||++++|..||+. +..+...|++....+|+.+++|.+...+--+.+|. ++ +.++++ .|+
T Consensus 49 ~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~ 128 (265)
T 3c4b_A 49 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEK 128 (265)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhh
Confidence 44789999999999999999995 34689999999999999999999988874333443 22 344555 666
Q ss_pred CCCCCCC--------CCCCCCC-hhHHhhhhhHHHHHHHHhcCC-h--hHHHHHHHH
Q 025342 187 NVGSANT--------RTKRRAG-AAVYNRASSLETLAGYLYLTN-A--NRLEDVMSK 231 (254)
Q Consensus 187 Naks~~t--------~~pKna~-v~~YR~ATGFEALIGYLYLt~-~--eRL~EL~~~ 231 (254)
|...... ...++.+ ......|++||||||.+||.. . ++..+++..
T Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G~~~~~~~~~i~~ 185 (265)
T 3c4b_A 129 NEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYP 185 (265)
T ss_dssp HC------------------CCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecCCCHHHHHHHHHH
Confidence 6431100 0012222 356788999999999999994 5 777776644
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=97.83 E-value=2.9e-05 Score=69.14 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=69.4
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
+=--|+|+||||.++.|-.++.. +......|++.-..+|+-+.-+.+...+- |. +.+++|......
T Consensus 128 ~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lg----L~----~~l~~~~g~~~~---- 195 (246)
T 3rv1_A 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLN----FT----KRLQGNIATPTR---- 195 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTT----SH----HHHCSSCC--------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCC----cH----HHHhhcCCHhhh----
Confidence 44789999999999999999884 45678889988888999998888877762 21 233332111000
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcCC----hhHHHHHHHHh
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLTN----ANRLEDVMSKL 232 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt~----~eRL~EL~~~l 232 (254)
+......=-.|..|||+||-+||.. .+.+++++..|
T Consensus 196 -~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 196 -VVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred -ccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Confidence 0000111235899999999999984 56888877654
No 10
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=97.72 E-value=0.00012 Score=67.63 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=70.9
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
+=--|+|+||||.+++|-.++.. +......|++....+|+.+.-+.+...+-=..+| ++|.....
T Consensus 128 ~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l--------~~~~g~~~----- 194 (341)
T 3rv0_A 128 SNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL--------QGNIATPT----- 194 (341)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTT--------CCSSCCC------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHh--------hhcCChhh-----
Confidence 44789999999999999999884 4568889999888999999999888876322233 22211000
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcC----ChhHHHHHHHH
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLT----NANRLEDVMSK 231 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt----~~eRL~EL~~~ 231 (254)
.+......--.|.+||||||-+||. |.+...+++..
T Consensus 195 ~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~ 234 (341)
T 3rv0_A 195 RVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEE 234 (341)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHH
T ss_pred hccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHH
Confidence 0111123334689999999999997 46777777654
No 11
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.98 E-value=0.0027 Score=64.23 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=71.7
Q ss_pred HHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 025342 120 ASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKR 197 (254)
Q Consensus 120 LaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~pK 197 (254)
--|.|+||||-++.|=.++.. +.....+|.+.-..+|+-+.-+.+...+-. .| . ..++.|+..... .+
T Consensus 648 eRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~--~L--~--~~l~~~~~e~~~---~~- 717 (756)
T 2qvw_A 648 QKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPS--VV--S--EVIIESHPKIQP---DS- 717 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCT--HH--H--HHHHHHSTTCCT---TC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcc--cH--H--HHHhcCchhhcC---Cc-
Confidence 569999999999999999984 456788899888889999988887766510 01 1 334555432110 11
Q ss_pred CCChhHHhhhhhHHHHHHHHhcC-ChhHHHHHHHHhC
Q 025342 198 RAGAAVYNRASSLETLAGYLYLT-NANRLEDVMSKLG 233 (254)
Q Consensus 198 na~v~~YR~ATGFEALIGYLYLt-~~eRL~EL~~~lg 233 (254)
=-.|..||||||-+||. |.+...+++..+-
T Consensus 718 ------kilaD~~EAliGAiylD~G~~~a~~~v~~~~ 748 (756)
T 2qvw_A 718 ------KVYGDTFEAILAAILLACGEEAAGAFVREHV 748 (756)
T ss_dssp ------SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred ------cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 13699999999999999 6888888887654
No 12
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.31 E-value=0.012 Score=59.60 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=69.0
Q ss_pred ChHHHHHHhhHHHHHHHHHHhhC--CCCChhHHhHhhhheeechhHHHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCC
Q 025342 118 NAASLAYIGDCIYELYARRHFLF--PPLSIEEYNNRVMAVVRCETQDALLQKLLNDSYLSAEERDVVRWGKNVGSANTRT 195 (254)
Q Consensus 118 spLaLAYIGDAVYELyVR~~ll~--~~~kv~~Lhk~v~~~VsAkAQA~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~ 195 (254)
|=--|.|+||||-++.|=.+|.. +.....+|.+.-.++|+-+.=+.+-+.+-=..+| +-|+...
T Consensus 333 nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l--------~~~~~e~------ 398 (756)
T 2qvw_A 333 VFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLA--------EFSNNLV------ 398 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTC--------BCCSCC-------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHh--------ccCCCCC------
Confidence 44679999999999999999884 4567888998888899998888887776422222 2222210
Q ss_pred CCCCChhHHhhhhhHHHHHHHHhcC-C-hhHHHHHHHHh
Q 025342 196 KRRAGAAVYNRASSLETLAGYLYLT-N-ANRLEDVMSKL 232 (254)
Q Consensus 196 pKna~v~~YR~ATGFEALIGYLYLt-~-~eRL~EL~~~l 232 (254)
.+ .--.|.+|||+||-+||. . .+...+++..+
T Consensus 399 -~~----~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~ 432 (756)
T 2qvw_A 399 -AK----SKTWADMYEEIVGSIFTGPNGIYGCEEFLAKT 432 (756)
T ss_dssp --C----CCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred -Cc----ccHHHhHHHHHhCcccccccChHHHHHHHHHH
Confidence 00 112588999999999997 5 77777766554
No 13
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=34.43 E-value=11 Score=31.64 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChhHHhhhhhHHHHHHHHhcC-C-hhHHHHHHHHhCCCC
Q 025342 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLT-N-ANRLEDVMSKLGFTN 236 (254)
Q Consensus 163 ~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~pKna~v~~YR~ATGFEALIGYLYLt-~-~eRL~EL~~~lg~s~ 236 (254)
-+|+.|++.++||.||.++++. -++.+.+ ..+=-|...=+--.+.|-|+-||-=. + +--|+-.++.+||+.
T Consensus 45 ~LLD~LL~~gvLs~EE~EiV~~-~~T~~dK--aRrLLDlV~sKGe~a~e~Ll~~Lqql~day~dl~pwl~ei~~~p 117 (144)
T 4e9m_A 45 CLVDNLLKNDYFSAEDAEIVCA-CPTQPDK--VRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFSP 117 (144)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHT-SSSHHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHhc-cCChHHH--HHHHHHHHHHhhHHHHHHHHHHHHHccccccchhHHHHHhCCCc
Confidence 6789999999999999999955 3332211 11223445555677888899998866 3 456888999999983
No 14
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.11 E-value=19 Score=26.99 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChhHHhhhhhHHHHHHHHhcCChhHHHHHHHH
Q 025342 163 ALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTNANRLEDVMSK 231 (254)
Q Consensus 163 ~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~pKna~v~~YR~ATGFEALIGYLYLt~~eRL~EL~~~ 231 (254)
.++..|++.+.||++|.+.++.-.|..... +..+=-+...-|=-.||.+++-.|-=+++.=|.++++.
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~~~~t~~~-~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~~ 92 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRAGSGSRRD-QARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRT 92 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTSTTCCHHH-HHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCChHH-HHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHcc
Confidence 478889989999999999999864421100 00011122223445789999988865576677777643
No 15
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.31 E-value=14 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCC---CChhHHhhhhhHHHHHHHHhcCChhHHHHHHH
Q 025342 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRR---AGAAVYNRASSLETLAGYLYLTNANRLEDVMS 230 (254)
Q Consensus 162 A~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~pKn---a~v~~YR~ATGFEALIGYLYLt~~eRL~EL~~ 230 (254)
..++..|+..+.||++|.+.++.. ++. .-|. -+...-|-..||..++-.|--+++.-|.++++
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~-~t~-----~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L~ 90 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNE-PTQ-----QQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLH 90 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTS-SSH-----HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcC-CCh-----HHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHHh
Confidence 468889998899999999999986 221 1111 12223334567888888887777666766664
No 16
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.49 E-value=33 Score=26.75 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=15.1
Q ss_pred hhcCCCCCHHHHHHH----HhhcCC
Q 025342 168 LLNDSYLSAEERDVV----RWGKNV 188 (254)
Q Consensus 168 Ll~e~~LTEEE~~Iv----RRGRNa 188 (254)
|+....||+++...+ |||+|.
T Consensus 51 lL~~~~Lt~~Ql~lIrdiRRRgKNk 75 (90)
T 2lz1_A 51 MMSKEQFNEAQLALIRDIRRRGKNK 75 (90)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHSCSC
T ss_pred HHHHcCCCHHHHHHHHHHHHhhhhH
Confidence 343457999997655 899995
No 17
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=26.21 E-value=45 Score=25.50 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=25.7
Q ss_pred HHhhhhhHHH-------HHHHHhcCChhHHHHHHHHhCCC
Q 025342 203 VYNRASSLET-------LAGYLYLTNANRLEDVMSKLGFT 235 (254)
Q Consensus 203 ~YR~ATGFEA-------LIGYLYLt~~eRL~EL~~~lg~s 235 (254)
||..--||-. |+-||.=.|.+|-.++++.||+.
T Consensus 48 D~~srRgL~~lv~kRrkLL~YL~~~d~~rY~~li~~Lglr 87 (88)
T 3r8n_O 48 DHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLR 87 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTCC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhCCC
Confidence 4555556654 55688888999999999999985
No 18
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=24.30 E-value=62 Score=24.68 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHhhcCCCCCCCCCCCCCChhHHhhhhhHHHHHHHHhcCC
Q 025342 162 DALLQKLLNDSYLSAEERDVVRWGKNVGSANTRTKRRAGAAVYNRASSLETLAGYLYLTN 221 (254)
Q Consensus 162 A~ll~~Ll~e~~LTEEE~~IvRRGRNaks~~t~~pKna~v~~YR~ATGFEALIGYLYLt~ 221 (254)
..+|+.|++.+.||++| +.++++-++...+ ..+=-+...=|--.|++.++.+|--++
T Consensus 30 ~~lLD~LL~~~VL~~ee-~~I~~~~~T~~~k--aR~Lld~v~~KG~~A~~~F~~~L~e~~ 86 (98)
T 2nz7_A 30 QCLVDNLLKNDYFSAED-AEIVCACPTQPDK--VRKILDLVQSKGEEVSEFFLYLLQQLA 86 (98)
T ss_dssp HHHHHHHHHTTSSCHHH-HHHHHTCCSHHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHH-HHHHccCCCcHHH--HHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 57888999889999999 8888765542210 001122233344567777777765444
No 19
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=22.44 E-value=44 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHhhhhhHHHH-------HHHHhcCChhHHHHHHHHhCCC
Q 025342 203 VYNRASSLETL-------AGYLYLTNANRLEDVMSKLGFT 235 (254)
Q Consensus 203 ~YR~ATGFEAL-------IGYLYLt~~eRL~EL~~~lg~s 235 (254)
||..--||-.| +-||.=.|.+|-.++++.||+.
T Consensus 49 D~~srRgL~~lv~kRrkLL~YLk~~d~~rY~~li~~Lglr 88 (89)
T 2vqe_O 49 DHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIR 88 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhCCC
Confidence 45555666655 4588888899999999999985
No 20
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=21.25 E-value=46 Score=25.39 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhCCC
Q 025342 212 TLAGYLYLTNANRLEDVMSKLGFT 235 (254)
Q Consensus 212 ALIGYLYLt~~eRL~EL~~~lg~s 235 (254)
-|+-||.=.|.+|-.++++.||+.
T Consensus 64 kLL~YL~~~d~~rY~~li~~Lglr 87 (88)
T 1a32_A 64 RLLAYLRNKDVARYREIVEKLGLR 87 (88)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCHHHHHHHHHHhCCC
Confidence 456688888999999999999985
Done!