BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025343
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide
Reductase
Length = 151
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 82/131 (62%), Gaps = 5/131 (3%)
Query: 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNS 182
+ S++EWR IL PE FR+ R+ TE P TG+Y ++GIY C CGT L+ S TKF+S
Sbjct: 21 IELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDS 80
Query: 183 GCGWPAFYEGL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 239
G GWP+FY+ + I D +R E+ CA C HLGHVF + P PT +R+C+N
Sbjct: 81 GTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRYCMN 138
Query: 240 SISLKFVPANS 250
S +LKF+P +
Sbjct: 139 SAALKFIPRDQ 149
>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CEZ|B Chain B, Crystal Structure Of Methionine-R-Sulfoxide Reductase From
Burkholderia Pseudomallei
pdb|3CXK|A Chain A, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card.
pdb|3CXK|B Chain B, 1.7 A Crystal Structure Of Methionine-R-Sulfoxide
Reductase From Burkholderia Pseudomallei:
Crystallization In A Microfluidic Crystal Card
Length = 164
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 15/149 (10%)
Query: 111 GVVLAVASGPASVN-----------KSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHF 159
G + A GP S++ K + E R L+P Q+ + + ATE P TGEY
Sbjct: 10 GTLEAQTQGPGSMSGDRDDPRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTE 69
Query: 160 EEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPG-AINCSPD-PDGL-RIEITCAACG 216
+ GIY+C CGT L++S K++SGCGWP++++ + G I+ D G+ R+E+ C CG
Sbjct: 70 DAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCG 129
Query: 217 GHLGHVFKGEGFPTPTDERHCVNSISLKF 245
HLGHVF+ +G T R+C+NS +L F
Sbjct: 130 AHLGHVFE-DGPRDKTGLRYCINSAALNF 157
>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein
Length = 143
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 14/137 (10%)
Query: 129 EWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPA 188
+W+ L+PEQF + R+K TE P +G Y + E G+Y+C C +PL+ S K+ SG GWP+
Sbjct: 3 DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 189 FYEGLPGAINCSPDPDGL-----------RIEITCAACGGHLGHVFKGEGFPTPTDERHC 237
F E G+ G+ R+E+ C C HLGHVF P PT +R C
Sbjct: 63 FSEAY-GSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDG--PKPTGQRFC 119
Query: 238 VNSISLKFVPANSGSSM 254
+NS++LKF P+ +++
Sbjct: 120 INSVALKFKPSKPAAAL 136
>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
pdb|3HCJ|B Chain B, Structure Of Msrb From Xanthomonas Campestris (Oxidized
Form)
Length = 154
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191
A LS E+ R+L TE P G + + +G+Y C CG PL++S KF+SG GWP+F+
Sbjct: 19 AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78
Query: 192 GL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF 245
P + D +R EI CA C HLGHVF P PT ERHC+NS+SL F
Sbjct: 79 PYDPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDG--PPPTGERHCLNSVSLAF 133
>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
pdb|3HCI|B Chain B, Structure Of Msrb From Xanthomonas Campestris
(Complex-Like Form)
Length = 154
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 132 AILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191
A LS E+ R+L TE P G + + +G+Y C CG PL++S KF+SG GWP+F+
Sbjct: 19 AGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78
Query: 192 GL-PGAINCSPDPD--GLRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKF 245
P + D +R EI CA C HLGHVF P PT ERH +NS+SL F
Sbjct: 79 PYDPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDG--PPPTGERHSLNSVSLAF 133
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
S+E +A LS E +R+ ++ ATE P T YD+ FEEGIY G PL+ + KF SGCG
Sbjct: 172 SQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCG 231
Query: 186 WPAFYEGLPGA-INCSPD-PDGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSIS 242
WP+F L I+ D G+ RIE+ + HLGHVF +G R+C+NS S
Sbjct: 232 WPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFT-DGPRELGGLRYCINSAS 290
Query: 243 LKFVPANS 250
L+FV +
Sbjct: 291 LRFVAKDE 298
>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|C Chain C, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
pdb|3HCG|D Chain D, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 146
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
S+ E + L+ EQ+++ + ATEY + EYD F+ GIY G PL+ S K++SGCG
Sbjct: 6 SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 65
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
WP+F + D + R E+ A HLGHVF P D+ R+C+N
Sbjct: 66 WPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFPD----GPRDKGGLRYCIN 121
Query: 240 SISLKFVP 247
SLKF+P
Sbjct: 122 GASLKFIP 129
>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
pdb|1L1D|B Chain B, Crystal Structure Of The C-Terminal Methionine Sulfoxide
Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb
Length = 152
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
S+ E + L+ EQ+++ + ATEY + EYD F+ GIY G PL+ S K++SGCG
Sbjct: 12 SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 71
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
WP+F + D + R E+ A HLGHVF P D+ R+C+N
Sbjct: 72 WPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFPD----GPRDKGGLRYCIN 127
Query: 240 SISLKFVP 247
SLKF+P
Sbjct: 128 GASLKFIP 135
>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
pdb|3HCH|B Chain B, Structure Of The C-Terminal Domain (Msrb) Of Neisseria
Meningitidis Pilb (Complex With Substrate)
Length = 146
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
S+ E + L+ EQ+++ + ATEY + EYD F+ GIY G PL+ S K++SG G
Sbjct: 6 SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSG 65
Query: 186 WPAFYEGLPGAINCSPDP---DGLRIEITCAACGGHLGHVFKGEGFPTPTDE---RHCVN 239
WP+F + D + R E+ A HLGHVF P D+ R+ +N
Sbjct: 66 WPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPD----GPRDKGGLRYSIN 121
Query: 240 SISLKFVP 247
SLKF+P
Sbjct: 122 GASLKFIP 129
>pdb|3E0O|A Chain A, Crystal Structure Of Msrb
pdb|3E0O|B Chain B, Crystal Structure Of Msrb
pdb|3E0O|C Chain C, Crystal Structure Of Msrb
pdb|3E0O|D Chain D, Crystal Structure Of Msrb
pdb|3E0O|E Chain E, Crystal Structure Of Msrb
pdb|3E0O|F Chain F, Crystal Structure Of Msrb
Length = 144
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
++EE L+ Q+ + + TE P EY H EEG+Y G PL+ S KF+S CG
Sbjct: 5 NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64
Query: 186 WPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
WP+F + + + D +R E+ HLGHVF +G P P R+C+NS +L
Sbjct: 65 WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVF-NDG-PGPNGLRYCINSAAL 122
Query: 244 KFVPAN 249
+FVP +
Sbjct: 123 RFVPKH 128
>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide
Reductase Msrb From Bacillus Subtilis, Northeast
Structural Genomics Consortium Target Sr10
Length = 151
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCG 185
++EE L+ Q+ + + TE P EY H EEG+Y G PL+ S KF+S CG
Sbjct: 4 NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 63
Query: 186 WPAFYEGLPGAINCSPDPDG--LRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISL 243
WP+F + + + D +R E+ HLGHVF +G P P R+C+NS +L
Sbjct: 64 WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVF-NDG-PGPNGLRYCINSAAL 121
Query: 244 KFVPAN 249
+FVP +
Sbjct: 122 RFVPKH 127
>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide
Reductase B1 (Msrb1)
Length = 105
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 155 YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLR---IEIT 211
+ HFE G+Y C+ CG L+ S +K+ WPAF E + A + + P+ R ++++
Sbjct: 5 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI-HADSVAKRPEHNRSEALKVS 63
Query: 212 CAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVP 247
C CG LGH F +G P P R + S SLKFVP
Sbjct: 64 CGKCGNGLGHEFLNDG-PKPGQSRFSIFSSSLKFVP 98
>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold
Evolution Of Mouse Selenoprotein Methionine Sulfoxide
Reductase B1 Through Structural Analysis
Length = 124
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 155 YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSPD---PDGLRIEI 210
+ HFE G+Y C+ C L+ S +K+ WPAF E + P ++ P+ P+ L+ +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALK--V 69
Query: 211 TCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVP 247
+C CG LGH F +G P R C+ S SLKFVP
Sbjct: 70 SCGKCGNGLGHEFLNDG-PKRGQSRFCIFSSSLKFVP 105
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 83 TVTGTGCISSSGF---YRSLRF--EQNKRSFRGGVVLAVASGPASVNKSEEEWRAILSPE 137
V GTGC + GF + LR E+ K G++ AV G + + +PE
Sbjct: 39 VVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSXPNTKPPVDTPE 98
Query: 138 QFRILRQKA 146
R L++KA
Sbjct: 99 AVRALKEKA 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,511,389
Number of Sequences: 62578
Number of extensions: 307391
Number of successful extensions: 623
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 17
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)