Query 025343
Match_columns 254
No_of_seqs 293 out of 2421
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0m_A Peptide methionine sulf 100.0 3.8E-79 1.3E-83 564.7 15.9 196 47-249 89-297 (313)
2 3e0o_A Peptide methionine sulf 100.0 4.2E-67 1.4E-71 438.6 10.9 125 123-249 2-128 (144)
3 3cxk_A Methionine-R-sulfoxide 100.0 1E-65 3.5E-70 437.8 12.2 128 121-250 31-162 (164)
4 2k8d_A Peptide methionine sulf 100.0 1.3E-66 4.6E-71 438.5 6.7 127 121-249 19-148 (151)
5 3hcg_A Peptide methionine sulf 100.0 2.7E-66 9.1E-71 434.8 7.8 125 124-249 4-131 (146)
6 3hcj_A MSRB, peptide methionin 100.0 6.1E-65 2.1E-69 429.3 11.2 122 126-249 13-137 (154)
7 2l1u_A MSRB2, methionine-R-sul 100.0 1.5E-65 5E-70 429.0 5.5 122 128-251 2-133 (143)
8 2kv1_A Methionine-R-sulfoxide 100.0 1.3E-52 4.5E-57 343.4 10.4 100 149-249 5-107 (124)
9 3mao_A Methionine-R-sulfoxide 100.0 2.5E-52 8.5E-57 333.6 8.4 97 153-250 3-101 (105)
10 2kao_A Methionine-R-sulfoxide 100.0 6.4E-52 2.2E-56 339.4 10.9 98 151-249 7-107 (124)
11 1nwa_A Peptide methionine sulf 99.8 5.6E-19 1.9E-23 155.1 6.7 88 47-138 110-201 (203)
12 4gwb_A Peptide methionine sulf 99.6 1.6E-16 5.3E-21 136.1 6.9 64 46-112 86-152 (168)
13 3bqh_A PILB, peptide methionin 99.6 4.5E-16 1.5E-20 135.8 7.1 66 46-116 90-158 (193)
14 3pim_A Peptide methionine sulf 99.6 5.9E-16 2E-20 134.5 4.9 62 46-112 115-179 (187)
15 1ff3_A Peptide methionine sulf 99.5 6.9E-15 2.4E-19 129.8 4.7 64 47-113 131-200 (211)
16 2j89_A Methionine sulfoxide re 99.5 2.6E-14 8.9E-19 129.3 7.6 65 47-116 183-250 (261)
17 1fvg_A Peptide methionine sulf 99.5 1.6E-14 5.4E-19 126.6 3.0 61 47-111 132-198 (199)
18 1pft_A TFIIB, PFTFIIBN; N-term 78.1 2 7E-05 28.6 3.4 32 158-191 19-50 (50)
19 1dl6_A Transcription factor II 74.8 1.8 6.3E-05 30.2 2.5 33 157-191 24-56 (58)
20 3k7a_M Transcription initiatio 45.5 12 0.0004 34.1 2.9 33 157-191 36-68 (345)
21 3gox_A Restriction endonucleas 35.0 27 0.00092 30.4 3.3 67 133-225 118-184 (200)
22 3fac_A Putative uncharacterize 33.7 32 0.0011 26.1 3.3 31 208-244 66-96 (118)
23 3w0f_A Endonuclease 8-like 3; 31.6 18 0.00063 32.8 1.8 70 124-221 212-285 (287)
24 3h0g_I DNA-directed RNA polyme 31.5 20 0.0007 27.8 1.8 19 205-223 68-86 (113)
25 3qt1_I DNA-directed RNA polyme 31.2 34 0.0012 27.5 3.2 18 206-223 89-106 (133)
26 1twf_I B12.6, DNA-directed RNA 30.6 13 0.00043 29.4 0.4 42 203-248 66-113 (122)
27 2znx_A SCFV; fluorotryptohpan, 30.4 19 0.00065 29.1 1.5 21 158-178 209-229 (242)
28 3k1f_M Transcription initiatio 27.2 8.1 0.00028 33.5 -1.3 33 158-192 37-69 (197)
29 2kn9_A Rubredoxin; metalloprot 27.0 87 0.003 23.4 4.5 22 160-188 24-45 (81)
30 3tf7_C 42F3 MUT7 SCFV (42F3 al 25.8 16 0.00054 29.9 0.2 22 158-179 219-243 (256)
31 4rxn_A Rubredoxin; electron tr 25.8 47 0.0016 23.0 2.6 19 163-188 3-21 (54)
32 2zkr_2 60S ribosomal protein L 23.5 34 0.0012 26.6 1.7 32 161-192 14-45 (97)
33 3j21_e 50S ribosomal protein L 23.2 29 0.00099 25.0 1.2 25 164-188 18-43 (62)
34 2aus_D NOP10, ribosome biogene 22.8 39 0.0013 24.1 1.8 9 166-174 20-28 (60)
35 2apo_B Ribosome biogenesis pro 22.8 31 0.0011 24.5 1.3 10 166-175 21-30 (60)
36 1vq8_1 50S ribosomal protein L 22.8 26 0.00089 24.9 0.8 27 162-188 16-43 (57)
37 4a18_A RPL37, ribosomal protei 22.5 25 0.00085 27.3 0.8 28 162-189 15-42 (94)
38 3uzq_A Anti-dengue MAB 4E11; d 20.8 37 0.0013 27.4 1.5 19 158-176 216-236 (253)
39 1s24_A Rubredoxin 2; electron 20.3 66 0.0022 24.4 2.7 20 161-187 33-52 (87)
No 1
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=3.8e-79 Score=564.72 Aligned_cols=196 Identities=29% Similarity=0.443 Sum_probs=178.4
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccC---CC
Q 025343 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVAS---GP 120 (254)
Q Consensus 47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaP---k~ 120 (254)
-.||+|+|||+|++|+++|++++++++. .+.++| ||| |+|+.+||+||+||| +|||.+++.+....- ..
T Consensus 89 G~QYRS~Ify~~~~Q~~~a~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc~~~~~~~~~~~~ 163 (313)
T 3e0m_A 89 GRQYRTGIYYQDEADLPAIYTVVQEQER--MLGRKI-AVE--VEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLI 163 (313)
T ss_dssp SGGGCCEEEESCGGGHHHHHHHHHHHHH--HHSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTCCCCSCGGGGTSCCC
T ss_pred ccccceeEecCCHHHHHHHHHHHHHHHH--hcCCCe-EEE--EeeccceeEcHHHHHHHHHHCCCcceeeecccchhhhh
Confidence 4799999999999999999999999987 468899 999 999999999999999 899998876664421 11
Q ss_pred C---CCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCC
Q 025343 121 A---SVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGA 196 (254)
Q Consensus 121 ~---~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~ 196 (254)
. -..++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++
T Consensus 164 ~~~~Y~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~ 243 (313)
T 3e0m_A 164 DAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKEL 243 (313)
T ss_dssp CGGGGCCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGG
T ss_pred cccccccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCc
Confidence 1 245799999999999999999999999999999999999999999999999999999999999999999999 578
Q ss_pred eeeecCC-CCC-eeEEEccccCCCcccccCCCCCC-CCCCceeeecccceeeeeCC
Q 025343 197 INCSPDP-DGL-RIEITCAACGGHLGHVFKGEGFP-TPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 197 v~~~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P-~ptg~RyCINs~aL~F~p~~ 249 (254)
|....|. +|| ||||+|++||+||||||+| | | +|||+||||||+||+|+|.+
T Consensus 244 v~~~~D~s~gm~RtEv~c~~c~~HLGHVF~D-G-p~~ptg~RyCiNs~sL~F~p~~ 297 (313)
T 3e0m_A 244 IHYYKDLSHGMERIEVRSRSGSAHLGHVFTD-G-PRELGGLRYCINSASLRFVAKD 297 (313)
T ss_dssp EEEEEECCTTCCEEEEEESSSCCEEEEEESC-S-CTTTTSCEEEECGGGEEEEEHH
T ss_pred eEEeecCCCCcEEEEEECCCCCCccCcccCC-C-CCCCCCCEEeeceeeEeeeccc
Confidence 9988886 687 9999999999999999986 4 6 79999999999999999974
No 2
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=4.2e-67 Score=438.65 Aligned_cols=125 Identities=37% Similarity=0.666 Sum_probs=118.7
Q ss_pred CCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecC
Q 025343 123 VNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPD 202 (254)
Q Consensus 123 ~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d 202 (254)
+.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|.+..|
T Consensus 2 ~~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D 81 (144)
T 3e0o_A 2 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD 81 (144)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999889998888
Q ss_pred C-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343 203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~ 249 (254)
. +|| ||||+|++||+||||||+| ||+|||+|||||||||+|+|.+
T Consensus 82 ~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCiNS~sL~F~p~~ 128 (144)
T 3e0o_A 82 TSHGMIRTEVRSRTADSHLGHVFND--GPGPNGLRYCINSAALRFVPKH 128 (144)
T ss_dssp CCTTSCEEEEEETTTCCEEEEEESC--CSSTTCCEEEECGGGEEEEEHH
T ss_pred CCCCceEEEEEcCCCCCccCCccCC--CCCCCCCEeeeceeeEeeeech
Confidence 6 687 9999999999999999986 4899999999999999999974
No 3
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=1e-65 Score=437.82 Aligned_cols=128 Identities=41% Similarity=0.823 Sum_probs=120.2
Q ss_pred CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeee
Q 025343 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC 199 (254)
Q Consensus 121 ~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~ 199 (254)
.++.++|+|||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|..
T Consensus 31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~ 110 (164)
T 3cxk_A 31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE 110 (164)
T ss_dssp CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999996 47888
Q ss_pred ecCC-CCC-eeEEEccccCCCcccccCCCCCC-CCCCceeeecccceeeeeCCC
Q 025343 200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFP-TPTDERHCVNSISLKFVPANS 250 (254)
Q Consensus 200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P-~ptg~RyCINs~aL~F~p~~~ 250 (254)
..|. +|| ||||+|++||+||||||+| || +|||+|||||||||+|+|++.
T Consensus 111 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~~ptg~RyCINS~sL~F~p~~~ 162 (164)
T 3cxk_A 111 KMDYTHGMTRVEVRCNQCGAHLGHVFED--GPRDKTGLRYCINSAALNFEAKPE 162 (164)
T ss_dssp EEECGGGCCEEEEEETTTCCEEEEEESC--SCTTTTSCEEEECGGGEEEEECC-
T ss_pred eECCCCCcEEEEEEeCCCCCccCcccCC--CCCCCCCCEEeeceeeEeeecccc
Confidence 8886 576 9999999999999999986 47 899999999999999999764
No 4
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.3e-66 Score=438.46 Aligned_cols=127 Identities=48% Similarity=0.967 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeee
Q 025343 121 ASVNKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINC 199 (254)
Q Consensus 121 ~~~~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~ 199 (254)
.++.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+
T Consensus 19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~ 98 (151)
T 2k8d_A 19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL 98 (151)
T ss_dssp ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999996 58999
Q ss_pred ecCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343 200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~ 249 (254)
..|. +|| ||||+|++||+||||||+| ||+|||+|||||||||+|+|.+
T Consensus 99 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCINS~sL~F~p~~ 148 (151)
T 2k8d_A 99 REDRSLGMVRCEVLCARCDAHLGHVFDD--GPRPTGKRYCMNSAALKFIPRD 148 (151)
T ss_dssp CCCBTTSSCEEEEEETTEEEEEEEEEEC--SSSSSCEEEEECSTTEEEECSS
T ss_pred eeCCCCCceEEEEEeCCCCCcCCcccCC--CCCCCCCEEeeceeeecccchH
Confidence 8886 577 9999999999999999986 4889999999999999999975
No 5
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=2.7e-66 Score=434.79 Aligned_cols=125 Identities=38% Similarity=0.698 Sum_probs=117.0
Q ss_pred CCCHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecC
Q 025343 124 NKSEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPD 202 (254)
Q Consensus 124 ~~s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d 202 (254)
.++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|....|
T Consensus 4 ~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D 83 (146)
T 3hcg_A 4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD 83 (146)
T ss_dssp CCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEEE
T ss_pred CCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999995 68988888
Q ss_pred C-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343 203 P-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 203 ~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~ 249 (254)
. +|| ||||+|++||+||||||+| |+++|||+|||||||||+|+|.+
T Consensus 84 ~s~gm~RtEV~C~~Cg~HLGHVF~D-GP~~~tg~RyCiNS~sL~F~p~~ 131 (146)
T 3hcg_A 84 FSYNMRRTEVRSHAADSHLGHVFPD-GPRDKGGLRYCINGASLKFIPLE 131 (146)
T ss_dssp EETTEEEEEEEETTTCCEEEEEESC-SCGGGTSCEEEECGGGEEEEEHH
T ss_pred CCCCcEEEEEEeCCCCCccCceeCC-CCCCCCCCEEeeeeEEEEeeehH
Confidence 5 687 9999999999999999986 43347999999999999999964
No 6
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=6.1e-65 Score=429.33 Aligned_cols=122 Identities=43% Similarity=0.808 Sum_probs=115.6
Q ss_pred CHHHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecCC-
Q 025343 126 SEEEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPDP- 203 (254)
Q Consensus 126 s~~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d~- 203 (254)
..++||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+..|.
T Consensus 13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s 92 (154)
T 3hcj_A 13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS 92 (154)
T ss_dssp HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTT
T ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999999999995 689988886
Q ss_pred CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCC
Q 025343 204 DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 204 ~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~ 249 (254)
+|| ||||+|++||+||||||+| ||.|||+|||||||||+|+|.+
T Consensus 93 ~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCiNS~sL~F~p~~ 137 (154)
T 3hcj_A 93 YGMIRTEIVCARCDSHLGHVFPD--GPPPTGERHCLNSVSLAFTEDG 137 (154)
T ss_dssp TTTSCEEEEETTTCCEEEEEESC--SCTTTTCEEEECGGGEEEEETT
T ss_pred CCceEEEEEeCCCCCccCCccCC--CCCCCCCEeeeceeeEEeeeCC
Confidence 687 9999999999999999986 4889999999999999999985
No 7
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=1.5e-65 Score=429.02 Aligned_cols=122 Identities=43% Similarity=0.877 Sum_probs=115.8
Q ss_pred HHHHhcCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc--------CCCeee
Q 025343 128 EEWRAILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL--------PGAINC 199 (254)
Q Consensus 128 ~ewr~~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i--------~~~v~~ 199 (254)
+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++|| +++|..
T Consensus 2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~ 81 (143)
T 2l1u_A 2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR 81 (143)
T ss_dssp CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred ecCC-CCC-eeEEEccccCCCcccccCCCCCCCCCCceeeecccceeeeeCCCC
Q 025343 200 SPDP-DGL-RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANSG 251 (254)
Q Consensus 200 ~~d~-~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~F~p~~~~ 251 (254)
..|. .|| ||||+|++||+||||||+| ||+|||+|||||||||+|+|.+.-
T Consensus 82 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~D--GP~ptg~RyCINS~sL~F~p~~~~ 133 (143)
T 2l1u_A 82 RLDTSLGCPRMEVVCKQCEAHLGHVFPD--GPKPTGQRFCINSVALKFKPSKPA 133 (143)
T ss_dssp EEECTTSSCEEEEEESSSCCCCEEEECC--SSCGGGCEEEECCTTEEEEESSBT
T ss_pred eecccCCceEEEEEECCCCCcCCcccCC--CCCCCCCEEEeeeeEEeccchhhh
Confidence 8886 577 9999999999999999986 488999999999999999998643
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-52 Score=343.43 Aligned_cols=100 Identities=37% Similarity=0.821 Sum_probs=91.5
Q ss_pred CCCCCC-CCCCCCCeEEEeccCCCCCCCCCCCccCCCCCccccccc-CCCeeeecCCCC-CeeEEEccccCCCcccccCC
Q 025343 149 YPGTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGL-PGAINCSPDPDG-LRIEITCAACGGHLGHVFKG 225 (254)
Q Consensus 149 ~pfsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i-~~~v~~~~d~~g-~RtEv~C~~Cg~HLGHVF~d 225 (254)
.+|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++|| +++|...+|..+ +||||+|++||+||||||.|
T Consensus 5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF~~ 84 (124)
T 2kv1_A 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLN 84 (124)
T ss_dssp CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEECTT
T ss_pred cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCccCC
Confidence 389999 778899999999999999999999999999999999999 567888888765 59999999999999999954
Q ss_pred CCCCCCCCceeeecccceeeeeCC
Q 025343 226 EGFPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 226 ~G~P~ptg~RyCINs~aL~F~p~~ 249 (254)
|| |+|||+|||||||||+|+|++
T Consensus 85 DG-P~ptg~RyCINS~sL~F~p~~ 107 (124)
T 2kv1_A 85 DG-PKRGQSRFCIFSSSLKFVPKG 107 (124)
T ss_dssp SC-TTTTCSCEECCTTTEEEEECS
T ss_pred CC-CCCCCCEEeecceeeEeEECc
Confidence 44 899999999999999999975
No 9
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=2.5e-52 Score=333.60 Aligned_cols=97 Identities=36% Similarity=0.823 Sum_probs=88.9
Q ss_pred CCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecCCCCC-eeEEEccccCCCcccccCCCCCCC
Q 025343 153 GEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPDPDGL-RIEITCAACGGHLGHVFKGEGFPT 230 (254)
Q Consensus 153 g~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d~~g~-RtEv~C~~Cg~HLGHVF~d~G~P~ 230 (254)
-+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|.+..|..+| ||||+|++||+||||||++|| |+
T Consensus 3 e~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~C~~HLGHVF~~DG-P~ 81 (105)
T 3mao_A 3 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDG-PK 81 (105)
T ss_dssp CCCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTTSTTEEEEEETTTCCEEEEEETTCS-SS
T ss_pred ccccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCCCCCEEEEEeCCCCCccCcccCCCC-cC
Confidence 379999999999999999999999999999999999999995 689888886444 999999999999999995455 88
Q ss_pred CCCceeeecccceeeeeCCC
Q 025343 231 PTDERHCVNSISLKFVPANS 250 (254)
Q Consensus 231 ptg~RyCINs~aL~F~p~~~ 250 (254)
|||+|||||||||+|+|.+.
T Consensus 82 ptg~RyCiNS~sL~F~p~~~ 101 (105)
T 3mao_A 82 PGQSRFSIFSSSLKFVPKGK 101 (105)
T ss_dssp TTCCEEEECGGGEEEEETTC
T ss_pred CCCCEEeeCeeeEEeeeccc
Confidence 99999999999999999864
No 10
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=6.4e-52 Score=339.38 Aligned_cols=98 Identities=37% Similarity=0.830 Sum_probs=89.5
Q ss_pred CCCC-CCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccC-CCeeeecCCCCC-eeEEEccccCCCcccccCCCC
Q 025343 151 GTGE-YDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLP-GAINCSPDPDGL-RIEITCAACGGHLGHVFKGEG 227 (254)
Q Consensus 151 fsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~-~~v~~~~d~~g~-RtEv~C~~Cg~HLGHVF~d~G 227 (254)
|+|+ ||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|++..|..+| ||||+|++||+||||||+|||
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~Cg~HLGHVF~~DG 86 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLNDG 86 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEEECSSCTTCEEEECTTTTCCCEEECCSSC
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEEecCCCCCEEEEEeCCCCCcCCccCCCCC
Confidence 5677 8899999999999999999999999999999999999995 689888886444 999999999999999995455
Q ss_pred CCCCCCceeeecccceeeeeCC
Q 025343 228 FPTPTDERHCVNSISLKFVPAN 249 (254)
Q Consensus 228 ~P~ptg~RyCINs~aL~F~p~~ 249 (254)
|+|||+|||||||||+|+|++
T Consensus 87 -P~ptg~RyCINS~sL~F~p~~ 107 (124)
T 2kao_A 87 -PKRGQSRFCIFSSSLKFVPKG 107 (124)
T ss_dssp -SSSSCCCEECCSSSEEEECCS
T ss_pred -cCCCCCEeeeCeEEEEeeccc
Confidence 889999999999999999975
No 11
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=99.76 E-value=5.6e-19 Score=155.07 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=65.4
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeeccCCCCCC
Q 025343 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAVASGPASV 123 (254)
Q Consensus 47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaAaPk~~~~ 123 (254)
-.||+|+|||+|++|+++|+++++++++++.++++| ||| |+|+++||+||+||| +|||.+|++ .+..|+..++
T Consensus 110 GtQYRSaIfy~~~eQ~~~A~~~~~~lq~~g~~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Y~c-~~~~~~~~k~ 185 (203)
T 1nwa_A 110 GTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV-VTE--VSPAGDFWEAEPEHQDYLQRYPNGYTC-HFVRPGWRLP 185 (203)
T ss_dssp SGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC-CCCCTTSCCS
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEE--EecCCCEEEChHHHHHHHHhCCCCCcc-cccHHHHHhh
Confidence 469999999999999999999999999877788999 999 999999999999999 899999744 3355666666
Q ss_pred CCC-HHHHHhcCCHHH
Q 025343 124 NKS-EEEWRAILSPEQ 138 (254)
Q Consensus 124 ~~s-~~ewr~~Ltp~q 138 (254)
.+. +.+||..|||+-
T Consensus 186 ~~~a~~~~~~~~~~~~ 201 (203)
T 1nwa_A 186 RRTAESALRASLSPEL 201 (203)
T ss_dssp CC--------------
T ss_pred hhhhhhhhhhhcCccc
Confidence 554 445999999973
No 12
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=99.64 E-value=1.6e-16 Score=136.07 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=59.3
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCce
Q 025343 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV 112 (254)
Q Consensus 46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV 112 (254)
.-.||+|+|||+|++|+++|+++++++++++.+.++| ||| |+|+++||+||+||| +|||.++.+
T Consensus 86 ~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~I-vTe--i~p~~~Fy~AE~yHQ~Yl~knP~~y~C 152 (168)
T 4gwb_A 86 IGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV-VTE--VEPVRDFWEAEPEHQNYLERYPNGYTC 152 (168)
T ss_dssp ESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCC-CCE--EEECCCEEECCGGGTTHHHHSTTSCCC
T ss_pred CCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCE-EEE--EEecCCeeECHHHHHHHHHhCCCCCcc
Confidence 3469999999999999999999999998877788999 999 999999999999999 899999855
No 13
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=99.62 E-value=4.5e-16 Score=135.77 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeec
Q 025343 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV 116 (254)
Q Consensus 46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaA 116 (254)
--.||+|+|||+|++|+++|+++++.+++ .+.++| ||| |+|+.+||+||+||| .|||.+++.+...
T Consensus 90 ~G~QYRS~If~~~~~Q~~~A~~~~~~~~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knp~~Yc~~~~~ 158 (193)
T 3bqh_A 90 TGTQYRSGVYYTDPAEKAVIAAALKREQQ--KYQLPL-VVE--NEPLKNFYDAEEYHQDYLIKNPNGYCHIDIR 158 (193)
T ss_dssp TTCTTCEEEEESSHHHHHHHHHHHHHHHT--TCSSCB-CCE--EEECCCEEECCGGGTTHHHHCTTCCC---CC
T ss_pred cCccceeeeecCCHHHHHHHHHHHHHHHH--HhCCCe-EEE--EecCCCeeEcHHHHHHHHHhCCCCceeeecc
Confidence 45799999999999999999999999987 378899 999 999999999999999 8999987765433
No 14
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=99.59 E-value=5.9e-16 Score=134.50 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=57.0
Q ss_pred cccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCce
Q 025343 46 FSSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGV 112 (254)
Q Consensus 46 ~s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggV 112 (254)
--.||+|+|||+|++|+++|+++++++++ .+.++| ||| |+|+++||+||+||| +|||.++++
T Consensus 115 ~G~QYRS~Ify~~~~Q~~~A~~~~~~l~~--~~~~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Ycc 179 (187)
T 3pim_A 115 KGTQYRSGLFAHSDADLKELAKIKEEWQP--KWGNKI-ATV--IEPIKNFYDAEEYHQLYLDKNPQGYAC 179 (187)
T ss_dssp -CGGGCCEEEESSHHHHHHHHHHHHHHGG--GGTTCB-CCE--EEEEEEEEEHHHHHHHHCTTCTTCTTC
T ss_pred cCcccceeeEeCCHHHHHHHHHHHHHHHH--HhCCCc-EEE--EeeCCCeeecHHHHHHHHHHCCCCCCC
Confidence 34799999999999999999999999987 478899 999 999999999999999 899998876
No 15
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=99.51 E-value=6.9e-15 Score=129.82 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=55.5
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccC---CCCCCceeeeccceeecccceechhhcc---ccccccCcee
Q 025343 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPS---LLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVV 113 (254)
Q Consensus 47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s---~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVV 113 (254)
-.||+|+|||+|++|+++|+++++.+++. ..++++| ||| |+|+.+||+||+||| +|||.+|+.+
T Consensus 131 GtQYRSaIf~~~~eQ~~~A~~~~~~~q~~l~~~g~~~~I-vTe--I~p~~~Fy~AE~YHQ~Yl~knP~~Yc~~ 200 (211)
T 1ff3_A 131 GTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHI-TTE--IANATPFYYAEDDHQQYLHKNPYGYCGI 200 (211)
T ss_dssp SGGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCE--ECCCCCEEECCGGGTTHHHHSCCCCCCC
T ss_pred CccceeeeecCCHHHHHHHHHHHHHHHHHHhhcccCCce-EEE--EeeCCCceeChHHHHHHHHHCCCCCcCc
Confidence 46999999999999999999999877652 1267789 999 999999999999999 8999976553
No 16
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=99.50 E-value=2.6e-14 Score=129.31 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=57.5
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCCCCCCceeeeccceeecccceechhhcc---ccccccCceeeec
Q 025343 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSLLKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGGVVLAV 116 (254)
Q Consensus 47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~ggVVlaA 116 (254)
-.||+++|||+|++|+++|+++++++++. +.++| ||| |+|+.+||+|||||| +|||..++-..++
T Consensus 183 GtQYRSaIfy~~eeQ~~~Ae~s~~~~q~~--~~~~I-vTE--I~p~~~Fy~AEdYHQ~Yl~Kn~~~gy~qsa~ 250 (261)
T 2j89_A 183 GTQYRSGIYYYTPEQEKAAKESLERQQKL--LNRKI-VTE--ILPAKKFYRAEEYHQQYLAKGGRFGFMQSAE 250 (261)
T ss_dssp SGGGCEEEEESSHHHHHHHHHHHHHHHTT--CSSCC-CCE--EEECCCEEECCGGGTTTTTTTTTTSCCCCCC
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHh--cCCCc-EEE--EecCCCeeECHHHHHHHHHHCCCCCCccccc
Confidence 46999999999999999999999999874 67899 999 999999999999999 8999877743333
No 17
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=99.46 E-value=1.6e-14 Score=126.59 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=52.6
Q ss_pred ccccceEEEeCCHHHHHHHHHHHHHHccCC---CCCCceeeeccceeecccceechhhcc---ccccccCc
Q 025343 47 SSVLSNLNFIHSPTTTRLFTNRLNSLAPSL---LKLKPLTVTGTGCISSSGFYRSLRFEQ---NKRSFRGG 111 (254)
Q Consensus 47 s~~~~~aIFy~neeQk~~A~~~l~~l~~s~---~~~k~I~vTe~~I~p~~~Fy~AEeYHQ---~KNP~~gg 111 (254)
-.||+|+|||+|++|+++|+++++.+++.. .+ ++| ||| |+|+++||+||+||| +|||.+|+
T Consensus 132 G~QYRS~If~~~~~Q~~~A~~~~~~~q~~~~~~g~-~~I-vTe--I~p~~~Fy~AE~yHQ~Yl~knP~~Yc 198 (199)
T 1fvg_A 132 GSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGF-GLI-TTD--IREGQTFYYAEDYHQQYLSKDPDGYC 198 (199)
T ss_dssp SGGGCEEECCSSHHHHHHHHHHHHHHHHHHHHTTC-CCC-CCE--ECSSCCCEECCGGGTTHHHHSTTCCC
T ss_pred ChhheeccccCCHHHHHHHHHHHHHHHHHHhhcCC-CCe-EEE--EeeCCCeeECHHHHHHHHHhCCCCCC
Confidence 469999999999999999999998776521 12 589 999 999999999999999 89998653
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.10 E-value=2 Score=28.55 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=25.7
Q ss_pred CCCCeEEEeccCCCCCCCCCCCccCCCCCccccc
Q 025343 158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (254)
Q Consensus 158 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 191 (254)
..+.|..+|..||..+ .+.-.|.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence 3467999999999887 4456788999999963
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=74.79 E-value=1.8 Score=30.25 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=27.7
Q ss_pred CCCCCeEEEeccCCCCCCCCCCCccCCCCCccccc
Q 025343 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (254)
Q Consensus 157 ~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 191 (254)
...+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 24 ~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 24 EDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp ECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred EeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 34578999999999887 5667899999999974
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=45.46 E-value=12 Score=34.07 Aligned_cols=33 Identities=30% Similarity=0.654 Sum_probs=26.7
Q ss_pred CCCCCeEEEeccCCCCCCCCCCCccCCCCCccccc
Q 025343 157 KHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYE 191 (254)
Q Consensus 157 ~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 191 (254)
.....|.++|..||.-| .+.-.|.|.-|-+|..
T Consensus 36 ~D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 36 ERFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp CCSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred EECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 34579999999999988 6677899999999974
No 21
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=34.98 E-value=27 Score=30.43 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=44.4
Q ss_pred cCCHHHHHHhhhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeeeecCCCCCeeEEEc
Q 025343 133 ILSPEQFRILRQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINCSPDPDGLRIEITC 212 (254)
Q Consensus 133 ~Ltp~qy~Vlr~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~~~d~~g~RtEv~C 212 (254)
.||++||.-+.+.-.+ .--++.|+.|+.|+-....+ ..+.-+.-..|.---++|
T Consensus 118 GIT~eey~~L~e~Qg~-----------~~~~G~C~ICg~~~~~~~~k---------------~lvVDHDH~TG~VRGlLC 171 (200)
T 3gox_A 118 KLSSTEKKKMDEIAPP-----------KGSVFTCPICEKRSIVGVTA---------------NLVHDHNHDTGWGREWIC 171 (200)
T ss_dssp CCCHHHHHHHHTTCCC-----------TTCEEECTTTCCEEEBTTTB---------------CEEEEECTTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHccc-----------CCCCCcCcCCCCCCCcCccc---------------ceeeecccCCCcEecccc
Confidence 5899999888775432 22369999999998632211 112222112466568999
Q ss_pred cccCCCcccccCC
Q 025343 213 AACGGHLGHVFKG 225 (254)
Q Consensus 213 ~~Cg~HLGHVF~d 225 (254)
..|..=||++=+|
T Consensus 172 ~~CN~~LG~~~Dn 184 (200)
T 3gox_A 172 DSCNTGLGRFKDN 184 (200)
T ss_dssp HHHHHHHHHTTTC
T ss_pred hhhcchhccccCC
Confidence 9999999998654
No 22
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=33.69 E-value=32 Score=26.11 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=22.1
Q ss_pred eEEEccccCCCcccccCCCCCCCCCCceeeeccccee
Q 025343 208 IEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLK 244 (254)
Q Consensus 208 tEv~C~~Cg~HLGHVF~d~G~P~ptg~RyCINs~aL~ 244 (254)
.-..|+.||+||-+...+ .| ..+=||...|+
T Consensus 66 ~r~FC~~CGs~l~~~~~~--~~----~~~~V~~g~ld 96 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQRRS--NP----EEYGVNVAILE 96 (118)
T ss_dssp EEEEETTTCCEEEEECSS--CT----TEEEEEGGGBT
T ss_pred eeEECCCCCccccCccCC--CC----CEEEEEecccC
Confidence 457899999999776543 23 25668888775
No 23
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=31.57 E-value=18 Score=32.78 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCCHHHHHhcCCHHHHHHh----hhCCCCCCCCCCCCCCCCCeEEEeccCCCCCCCCCCCccCCCCCcccccccCCCeee
Q 025343 124 NKSEEEWRAILSPEQFRIL----RQKATEYPGTGEYDKHFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEGLPGAINC 199 (254)
Q Consensus 124 ~~s~~ewr~~Ltp~qy~Vl----r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~i~~~v~~ 199 (254)
.+++++|...+.... .|+ +..|+.-.|...++-..++ -|..||+++ ..
T Consensus 212 ~Ls~~~~~~L~~ai~-~Vl~~~~~~~g~~g~~~~~l~VYgR~---pC~~CGt~I------------------------~~ 263 (287)
T 3w0f_A 212 QLSDKQACHLVKMTR-DFSILFYRCCKAGSAISKHCKVYKRP---NCDQCHSKI------------------------TV 263 (287)
T ss_dssp GSCHHHHHHHHHHHH-HHHHHHHHHHHHTCCGGGGCSSTTCS---BCTTTCCBC------------------------EE
T ss_pred cCCHHHHHHHHHHHH-HHHHHHHhccCCCCcccccEEEECCC---CCCCCCCEE------------------------EE
Confidence 568888776544322 121 2223333466666655555 799998655 21
Q ss_pred ecCCCCCeeEEEccccCCCccc
Q 025343 200 SPDPDGLRIEITCAACGGHLGH 221 (254)
Q Consensus 200 ~~d~~g~RtEv~C~~Cg~HLGH 221 (254)
..-..+.|.-..|.+|.-|--|
T Consensus 264 ~~~g~~gRsTyfCp~~~~~~~~ 285 (287)
T 3w0f_A 264 CRFGENSRMTYFCPHCQKHHHH 285 (287)
T ss_dssp ECSSTTCCCEEECTTTSCC---
T ss_pred EEecCCCCCEEECCCccccccc
Confidence 1111123888999999998766
No 24
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.47 E-value=20 Score=27.77 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=14.2
Q ss_pred CCeeEEEccccCCCccccc
Q 025343 205 GLRIEITCAACGGHLGHVF 223 (254)
Q Consensus 205 g~RtEv~C~~Cg~HLGHVF 223 (254)
..|+++.|.+||.+--..|
T Consensus 68 lp~~~~~Cp~C~~~~a~~~ 86 (113)
T 3h0g_I 68 LPRSDKECPRCHQHEAVFY 86 (113)
T ss_dssp SCBCCSCCSSSCCSCEEEE
T ss_pred CCCcccCCCCCCCceEEEE
Confidence 4589999999996654444
No 25
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=31.15 E-value=34 Score=27.52 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=0.0
Q ss_pred CeeEEEccccCCCccccc
Q 025343 206 LRIEITCAACGGHLGHVF 223 (254)
Q Consensus 206 ~RtEv~C~~Cg~HLGHVF 223 (254)
.|+.+.|.+||..--..|
T Consensus 89 p~t~~~CpkCg~~~a~f~ 106 (133)
T 3qt1_I 89 PRSDRECPKCHSRENVFF 106 (133)
T ss_dssp ------------------
T ss_pred CcccCCCCCCCCceEEEE
Confidence 489999999996655444
No 26
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=30.60 E-value=13 Score=29.37 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=24.4
Q ss_pred CCCCeeEEEccccCCCcccccC------CCCCCCCCCceeeecccceeeeeC
Q 025343 203 PDGLRIEITCAACGGHLGHVFK------GEGFPTPTDERHCVNSISLKFVPA 248 (254)
Q Consensus 203 ~~g~RtEv~C~~Cg~HLGHVF~------d~G~P~ptg~RyCINs~aL~F~p~ 248 (254)
..+.||++.|.+||.+--..|. |+| .|--.-|.| ..-+|...
T Consensus 66 ~t~p~t~~~Cp~C~~~~a~~~q~q~rsade~---~t~fy~C~~-C~~~w~~n 113 (122)
T 1twf_I 66 PTLPRSDRECPKCHSRENVFFQSQQRRKDTS---MVLFFVCLS-CSHIFTSD 113 (122)
T ss_dssp TTSCCCCCCCTTTCCCCEEEEECSSCCTTCC---CCEEEEETT-TCCEEECC
T ss_pred ccccccCCCCCCCCCCEEEEEEecCccCCCC---ceEEEEeCC-CCCEeccC
Confidence 3455899999999976554442 221 233345655 55555443
No 27
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=30.39 E-value=19 Score=29.14 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=14.9
Q ss_pred CCCCeEEEeccCCCCCCCCCC
Q 025343 158 HFEEGIYNCSACGTPLYKSTT 178 (254)
Q Consensus 158 ~~~~G~Y~C~~Cg~pLF~S~~ 178 (254)
..+.|+|.|.+.+.-+|...+
T Consensus 209 ~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 209 TEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp GGGCEEEEEEETTSSCBCCCE
T ss_pred cCcCEEEEEeccCCcccCCCe
Confidence 358999999998754554433
No 28
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=27.24 E-value=8.1 Score=33.52 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=27.8
Q ss_pred CCCCeEEEeccCCCCCCCCCCCccCCCCCcccccc
Q 025343 158 HFEEGIYNCSACGTPLYKSTTKFNSGCGWPAFYEG 192 (254)
Q Consensus 158 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~ 192 (254)
..+.|.++|..||.-| .+.-.|.|.-|.+|...
T Consensus 37 D~erGE~VCsdCGLVL--EEriID~GPEWRAFsnD 69 (197)
T 3k1f_M 37 RFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSNX 69 (197)
T ss_dssp EGGGTEEEETTTCBBC--CCCCBCHHHHHHHHHCC
T ss_pred eCCCCEEEEcCCCCCc--CCceeECCCCCcCcCCc
Confidence 3578999999999887 66778999999999853
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=27.04 E-value=87 Score=23.41 Aligned_cols=22 Identities=27% Similarity=1.038 Sum_probs=16.1
Q ss_pred CCeEEEeccCCCCCCCCCCCccCCCCCcc
Q 025343 160 EEGIYNCSACGTPLYKSTTKFNSGCGWPA 188 (254)
Q Consensus 160 ~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 188 (254)
+...|.|..|| .-||.-.|+|-
T Consensus 24 em~~y~C~vCG-------yvYD~~~Gdp~ 45 (81)
T 2kn9_A 24 DYKLFRCIQCG-------FEYDEALGWPE 45 (81)
T ss_dssp CCCEEEETTTC-------CEEETTTCBTT
T ss_pred CcceEEeCCCC-------EEEcCCcCCcc
Confidence 34589999999 34677677763
No 30
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=25.83 E-value=16 Score=29.91 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred CCCCeEEEecc---CCCCCCCCCCC
Q 025343 158 HFEEGIYNCSA---CGTPLYKSTTK 179 (254)
Q Consensus 158 ~~~~G~Y~C~~---Cg~pLF~S~~K 179 (254)
..+.|+|.|++ ||..+|...+|
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeE
Confidence 35899999987 56666655444
No 31
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.78 E-value=47 Score=22.99 Aligned_cols=19 Identities=32% Similarity=0.803 Sum_probs=14.4
Q ss_pred EEEeccCCCCCCCCCCCccCCCCCcc
Q 025343 163 IYNCSACGTPLYKSTTKFNSGCGWPA 188 (254)
Q Consensus 163 ~Y~C~~Cg~pLF~S~~KFdSg~GWPS 188 (254)
.|.|..|| .-||.--|+|-
T Consensus 3 ~y~C~vCG-------yvYd~~~Gdp~ 21 (54)
T 4rxn_A 3 KYTCTVCG-------YIYDPEDGDPD 21 (54)
T ss_dssp CEEETTTC-------CEECTTTCBGG
T ss_pred ceECCCCC-------eEECCCcCCcc
Confidence 59999999 45777777764
No 32
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.52 E-value=34 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=25.8
Q ss_pred CeEEEeccCCCCCCCCCCCccCCCCCcccccc
Q 025343 161 EGIYNCSACGTPLYKSTTKFNSGCGWPAFYEG 192 (254)
Q Consensus 161 ~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~~ 192 (254)
.---.|..||..-|.-+-+.=+-||+|++-.-
T Consensus 14 KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R 45 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKR 45 (97)
T ss_dssp CCEECCTTTCSSCEETTSCCBTTTCTTTSSCC
T ss_pred CCCCcCCCCCCccCcCccccCcccCCchHhcc
Confidence 44568999999999887776667999998754
No 33
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.17 E-value=29 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.771 Sum_probs=22.4
Q ss_pred EEeccCCCCCCCCCCCccCCCCC-cc
Q 025343 164 YNCSACGTPLYKSTTKFNSGCGW-PA 188 (254)
Q Consensus 164 Y~C~~Cg~pLF~S~~KFdSg~GW-PS 188 (254)
=.|..||.--|.-..+.-+-||+ ||
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeecccCcchhccccccccccCCchh
Confidence 46999999999999999999999 64
No 34
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=22.83 E-value=39 Score=24.08 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=5.9
Q ss_pred eccCCCCCC
Q 025343 166 CSACGTPLY 174 (254)
Q Consensus 166 C~~Cg~pLF 174 (254)
|..||.+++
T Consensus 20 CP~CG~~t~ 28 (60)
T 2aus_D 20 CPVCGEKTK 28 (60)
T ss_dssp CTTTCSBCE
T ss_pred CcCCCCccC
Confidence 666777663
No 35
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.82 E-value=31 Score=24.52 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.8
Q ss_pred eccCCCCCCC
Q 025343 166 CSACGTPLYK 175 (254)
Q Consensus 166 C~~Cg~pLF~ 175 (254)
|..||.++.+
T Consensus 21 CP~CG~~T~~ 30 (60)
T 2apo_B 21 CPKCGEKTVI 30 (60)
T ss_dssp CSSSCSBCBC
T ss_pred CcCCCCcCCC
Confidence 7777777643
No 36
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=22.78 E-value=26 Score=24.88 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=23.9
Q ss_pred eEEEeccCCCCCCCCCCCccCCCCC-cc
Q 025343 162 GIYNCSACGTPLYKSTTKFNSGCGW-PA 188 (254)
Q Consensus 162 G~Y~C~~Cg~pLF~S~~KFdSg~GW-PS 188 (254)
=.=.|..||..-|.-..+.=+-||+ ||
T Consensus 16 tH~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 16 THTKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CEEECTTTCSEEEETTTTEETTTCTTTC
T ss_pred ccccccccCChhhhccccccccccCCch
Confidence 3467999999999999999999999 87
No 37
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=22.54 E-value=25 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=24.6
Q ss_pred eEEEeccCCCCCCCCCCCccCCCCCccc
Q 025343 162 GIYNCSACGTPLYKSTTKFNSGCGWPAF 189 (254)
Q Consensus 162 G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF 189 (254)
=.-.|..||.--|.-..+.-+-||+||=
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps~ 42 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYPDA 42 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGGGS
T ss_pred ccceecCcCchhhhhccccccccCCcHH
Confidence 3568999999999999999999999953
No 38
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=20.76 E-value=37 Score=27.43 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=12.6
Q ss_pred CCCCeEEEecc--CCCCCCCC
Q 025343 158 HFEEGIYNCSA--CGTPLYKS 176 (254)
Q Consensus 158 ~~~~G~Y~C~~--Cg~pLF~S 176 (254)
..+.|+|.|++ |+..+|..
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~ 236 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGG 236 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCC
T ss_pred HHHCEEEEEEEccCCCcEECC
Confidence 35899999987 44344433
No 39
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.28 E-value=66 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=14.9
Q ss_pred CeEEEeccCCCCCCCCCCCccCCCCCc
Q 025343 161 EGIYNCSACGTPLYKSTTKFNSGCGWP 187 (254)
Q Consensus 161 ~G~Y~C~~Cg~pLF~S~~KFdSg~GWP 187 (254)
...|.|..|| .-||.--|+|
T Consensus 33 m~~y~C~vCG-------yvYD~~~Gdp 52 (87)
T 1s24_A 33 YLKWICITCG-------HIYDEALGDE 52 (87)
T ss_dssp CCEEEETTTT-------EEEETTSCCT
T ss_pred CceEECCCCC-------eEecCCcCCc
Confidence 4579999999 3467667776
Done!