BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025344
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
Length = 258
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 32/244 (13%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196
+ G F V+ +RDR + D +R L
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL---------------EPDDRVRLVRADLR 164
Query: 197 AGADMIMIDSDDVCKHA------DSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRY 250
AGA M+++++ + ++ ++R D + RL +++ ++EA +FI +
Sbjct: 165 AGASMVLMEARESGQNIGIYDERGNIREDEFNHLTDRLPMDRIIWEAPQKSQQVYFILKI 224
Query: 251 GPKV 254
GP V
Sbjct: 225 GPDV 228
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161
F E++ +C+++GF+ +E++ GS +I E ++ K G F V+
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMP 139
Query: 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------H 212
D+D+ +D I+ L+AGAD ++I+ + K
Sbjct: 140 DKDKQL---------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGK 184
Query: 213 ADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254
D++AK + + K +FEA FI ++G V
Sbjct: 185 VKENELDVLAK---NVDINKVIFEAPQKSQQVAFILKFGSSV 223
>sp|O06739|PSLS_BACSU Phosphosulfolactate synthase OS=Bacillus subtilis (strain 168)
GN=yitD PE=1 SV=1
Length = 252
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 39/246 (15%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R KPR G + + Y L +D ++D +KF G+ SL+ K +EE +
Sbjct: 11 RTNKPRETGQSILIDNGYPL----QFFKDAIAGASDYIDFVKFGWGT-SLLTKD-LEEKI 64
Query: 77 KRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR 134
+HD+ G + +++ + + F Y C G + IE++ G+L + +
Sbjct: 65 STLKEHDITFFFGGTLFEKYVSQKKVNEFHRY---CTYFGCEYIEISNGTLPMTNKEKAA 121
Query: 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194
Y+ +F V+ S++ S A +A S E++E +
Sbjct: 122 YIA-------DFSDEFLVL---SEVGSKD-----AELASRQSSEEWLEYI-------VED 159
Query: 195 LEAGADMIMIDSDD-----VCKHADSLRADIIAKVIGRLGL-EKTMFEATNPRTSEWFIR 248
+EAGA+ ++ ++ + +C + +R I+ +I + +FEA N + FI+
Sbjct: 160 MEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQ 219
Query: 249 RYGPKV 254
+ GP V
Sbjct: 220 KIGPNV 225
>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
Length = 303
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R +PR+ G+T + ++ L DI ++D K + G+ +LMP + + +
Sbjct: 24 RVTQPRKRGITMVIDKGIGPAA----LADIDAVAAPYIDHWKLAFGTSALMPPQVLADKL 79
Query: 77 KRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135
+ V G E + + +++ +++GF +E++ G++++P + R
Sbjct: 80 AFLRERGVLTYPGGTLLEAAVVQ--QHCRVFMQRAEELGFTAVEISDGTIDLPRDRRRRI 137
Query: 136 VRLVKSAGL 144
+ + AGL
Sbjct: 138 IDCAREAGL 146
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 72 IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 121
++E +++AH+ + EH L+ S ++VE + ++L +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
V S++I E+T+ R +RL++ + KPK N +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234
>sp|Q5SZL2|CE85L_HUMAN Centrosomal protein of 85 kDa-like OS=Homo sapiens GN=CEP85L PE=1
SV=1
Length = 805
Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR 217
+ + + E V V L ++ ERCLE G + M+D+ + D+LR
Sbjct: 567 ICQKKKEKELVTTVQSLQQKVERCLEDGIRLPMLDAKQLQNENDNLR 613
>sp|Q045S7|PURA_LACGA Adenylosuccinate synthetase OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=purA PE=3 SV=1
Length = 429
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 45 DIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK 104
D E G + GLK S +H +MP +++ + + D + T +NG
Sbjct: 84 DNLEKEGIDISGLKISNRAHVIMPYHILQDTYQEEAKGDKKIGT-------TKNGIGPC- 135
Query: 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR--LVKSAGLKAKPKFAVMFNKSDIPSD 162
Y++ ++G +L + +T +R L + L F ++NK +
Sbjct: 136 -YMDKASRIGIRVCDL------LERDTFEEKLRTNLAEKNAL-----FTKVYNKPALKF- 182
Query: 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRA----ERCLEAGADMIMIDSDD 208
+ F Y+ + +YV D +++ A E+ L GA +M+D D+
Sbjct: 183 -EDIFEKYLEYGQKMKKYVTDTSVVVNDALDKNEKVLFEGAQGVMLDIDE 231
>sp|B1LEI6|DEOC_ECOSM Deoxyribose-phosphate aldolase OS=Escherichia coli (strain SMS-3-5
/ SECEC) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|Q31SV8|DEOC_SHIBS Deoxyribose-phosphate aldolase OS=Shigella boydii serotype 4
(strain Sb227) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
>sp|B2TZR4|DEOC_SHIB3 Deoxyribose-phosphate aldolase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=deoC PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 187 LIRRA-ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM 234
LIR+A E ++AGAD I + V +A A I+ +VI +G+EKT+
Sbjct: 150 LIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTV 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,049,272
Number of Sequences: 539616
Number of extensions: 4023302
Number of successful extensions: 10892
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10859
Number of HSP's gapped (non-prelim): 40
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)