Query 025344
Match_columns 254
No_of_seqs 101 out of 174
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 5.3E-84 1.1E-88 581.1 16.9 215 13-254 1-221 (244)
2 TIGR03849 arch_ComA phosphosul 100.0 1.9E-77 4E-82 536.3 22.3 202 26-254 1-209 (237)
3 COG1809 (2R)-phospho-3-sulfola 100.0 3.8E-73 8.2E-78 501.8 16.4 220 8-254 1-228 (258)
4 PRK08195 4-hyroxy-2-oxovalerat 97.5 0.0019 4.1E-08 61.2 13.6 167 24-230 78-246 (337)
5 TIGR03217 4OH_2_O_val_ald 4-hy 97.4 0.0028 6.1E-08 60.0 12.5 167 24-230 77-245 (333)
6 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.2 0.0051 1.1E-07 56.4 12.1 165 32-230 83-249 (275)
7 cd07943 DRE_TIM_HOA 4-hydroxy- 97.1 0.014 2.9E-07 53.0 13.4 166 24-230 75-242 (263)
8 PRK13209 L-xylulose 5-phosphat 97.1 0.0086 1.9E-07 53.8 11.8 103 90-207 11-121 (283)
9 cd07939 DRE_TIM_NifV Streptomy 97.0 0.0087 1.9E-07 54.1 11.3 154 44-230 73-240 (259)
10 PRK08446 coproporphyrinogen II 97.0 0.0089 1.9E-07 56.4 11.9 124 53-206 51-186 (350)
11 PRK06294 coproporphyrinogen II 97.0 0.0066 1.4E-07 57.8 10.8 121 52-204 57-189 (370)
12 cd03174 DRE_TIM_metallolyase D 97.0 0.032 6.9E-07 49.4 14.3 141 45-228 26-184 (265)
13 cd03174 DRE_TIM_metallolyase D 96.9 0.0047 1E-07 54.8 8.7 154 41-229 78-246 (265)
14 cd07944 DRE_TIM_HOA_like 4-hyd 96.9 0.011 2.5E-07 54.0 10.9 164 24-227 72-237 (266)
15 PRK05628 coproporphyrinogen II 96.8 0.015 3.3E-07 55.1 11.4 124 52-204 58-194 (375)
16 PF00682 HMGL-like: HMGL-like 96.7 0.012 2.7E-07 51.8 9.5 156 41-228 67-236 (237)
17 TIGR00736 nifR3_rel_arch TIM-b 96.6 0.063 1.4E-06 48.7 13.7 143 27-212 69-226 (231)
18 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.6 0.036 7.9E-07 50.8 12.3 151 44-228 27-187 (275)
19 PRK05660 HemN family oxidoredu 96.5 0.021 4.6E-07 54.5 10.3 125 52-203 57-192 (378)
20 TIGR00539 hemN_rel putative ox 96.5 0.026 5.7E-07 53.3 10.6 126 52-205 50-187 (360)
21 TIGR03128 RuMP_HxlA 3-hexulose 96.4 0.23 5.1E-06 42.7 15.5 120 39-205 10-133 (206)
22 PRK13210 putative L-xylulose 5 96.4 0.091 2E-06 46.9 13.3 146 90-251 6-173 (284)
23 PRK05904 coproporphyrinogen II 96.4 0.05 1.1E-06 51.7 12.0 125 52-206 55-191 (353)
24 cd07940 DRE_TIM_IPMS 2-isoprop 96.4 0.046 1E-06 49.6 11.1 159 41-229 73-245 (268)
25 TIGR00538 hemN oxygen-independ 96.3 0.03 6.4E-07 54.7 10.3 127 53-206 102-239 (455)
26 PRK13347 coproporphyrinogen II 96.3 0.065 1.4E-06 52.4 12.3 125 53-206 103-240 (453)
27 PRK11858 aksA trans-homoaconit 96.2 0.08 1.7E-06 50.8 12.5 153 42-230 80-246 (378)
28 TIGR00542 hxl6Piso_put hexulos 96.2 0.11 2.4E-06 46.8 12.7 144 92-251 8-173 (279)
29 TIGR02660 nifV_homocitr homoci 96.2 0.047 1E-06 52.0 10.8 149 50-231 82-244 (365)
30 PRK07379 coproporphyrinogen II 96.2 0.033 7.1E-07 53.7 9.6 126 52-204 65-201 (400)
31 PRK09249 coproporphyrinogen II 96.2 0.043 9.4E-07 53.6 10.6 127 53-206 102-239 (453)
32 PRK05692 hydroxymethylglutaryl 96.2 0.062 1.3E-06 49.9 11.0 148 52-231 91-263 (287)
33 PRK08208 coproporphyrinogen II 96.1 0.067 1.5E-06 52.0 11.6 127 54-206 92-229 (430)
34 TIGR01212 radical SAM protein, 96.1 0.13 2.8E-06 47.8 12.9 151 57-236 81-259 (302)
35 cd07941 DRE_TIM_LeuA3 Desulfob 95.9 0.12 2.6E-06 47.4 11.6 144 52-226 90-248 (273)
36 PRK13813 orotidine 5'-phosphat 95.9 0.18 3.9E-06 43.9 12.1 36 39-74 14-49 (215)
37 PLN02746 hydroxymethylglutaryl 95.9 0.086 1.9E-06 50.5 10.8 158 41-231 125-305 (347)
38 TIGR02090 LEU1_arch isopropylm 95.7 0.14 3.1E-06 48.8 11.6 144 53-229 84-241 (363)
39 cd00377 ICL_PEPM Members of th 95.7 0.24 5.2E-06 44.8 12.5 112 102-240 85-207 (243)
40 cd07944 DRE_TIM_HOA_like 4-hyd 95.7 0.44 9.6E-06 43.6 14.3 143 42-228 24-176 (266)
41 PRK05799 coproporphyrinogen II 95.6 0.16 3.5E-06 48.0 11.6 124 53-204 51-185 (374)
42 cd00950 DHDPS Dihydrodipicolin 95.6 0.18 3.8E-06 45.9 11.4 80 101-207 21-104 (284)
43 TIGR03151 enACPred_II putative 95.6 0.15 3.3E-06 47.7 11.0 113 67-229 45-161 (307)
44 PF00682 HMGL-like: HMGL-like 95.5 0.25 5.4E-06 43.5 11.8 146 42-228 18-175 (237)
45 COG0826 Collagenase and relate 95.5 0.39 8.4E-06 46.1 13.8 139 41-229 14-160 (347)
46 PRK08599 coproporphyrinogen II 95.5 0.49 1.1E-05 44.8 14.5 125 53-205 51-187 (377)
47 cd07945 DRE_TIM_CMS Leptospira 95.5 0.15 3.3E-06 47.1 10.7 155 42-230 79-249 (280)
48 TIGR03551 F420_cofH 7,8-dideme 95.5 0.36 7.7E-06 45.5 13.3 109 39-148 71-197 (343)
49 cd07938 DRE_TIM_HMGL 3-hydroxy 95.4 0.22 4.8E-06 45.8 11.4 156 41-231 77-257 (274)
50 TIGR02668 moaA_archaeal probab 95.4 0.89 1.9E-05 41.5 15.1 130 39-207 41-186 (302)
51 PRK09057 coproporphyrinogen II 95.3 0.11 2.4E-06 49.6 9.4 124 53-204 55-189 (380)
52 PRK00278 trpC indole-3-glycero 95.3 0.43 9.4E-06 43.6 12.8 108 107-253 126-235 (260)
53 cd07948 DRE_TIM_HCS Saccharomy 95.3 0.15 3.4E-06 46.6 9.9 151 41-227 75-238 (262)
54 PRK08207 coproporphyrinogen II 95.3 0.25 5.3E-06 49.3 11.9 128 52-206 217-357 (488)
55 cd02911 arch_FMN Archeal FMN-b 95.2 0.4 8.6E-06 43.2 12.2 124 40-208 84-222 (233)
56 PRK12331 oxaloacetate decarbox 95.2 0.17 3.6E-06 50.0 10.5 155 42-231 97-255 (448)
57 TIGR03217 4OH_2_O_val_ald 4-hy 95.1 0.74 1.6E-05 43.7 14.2 141 42-228 28-181 (333)
58 PRK06582 coproporphyrinogen II 95.1 0.27 5.8E-06 47.5 11.4 125 52-204 61-196 (390)
59 TIGR01037 pyrD_sub1_fam dihydr 95.0 0.45 9.7E-06 43.6 12.2 75 43-125 108-193 (300)
60 PRK01130 N-acetylmannosamine-6 95.0 0.73 1.6E-05 40.4 13.0 113 104-252 78-196 (221)
61 PRK13361 molybdenum cofactor b 95.0 0.34 7.3E-06 45.3 11.5 130 39-207 46-192 (329)
62 cd00408 DHDPS-like Dihydrodipi 94.9 0.46 1E-05 42.9 11.7 80 102-207 19-101 (281)
63 TIGR03470 HpnH hopanoid biosyn 94.8 0.69 1.5E-05 43.3 13.0 125 40-205 61-198 (318)
64 PRK01060 endonuclease IV; Prov 94.8 0.7 1.5E-05 41.4 12.7 92 102-207 13-111 (281)
65 TIGR02320 PEP_mutase phosphoen 94.7 0.74 1.6E-05 43.0 12.7 100 102-229 93-206 (285)
66 smart00729 Elp3 Elongator prot 94.7 2 4.3E-05 35.2 14.1 119 54-204 52-186 (216)
67 PRK03170 dihydrodipicolinate s 94.6 0.53 1.1E-05 43.1 11.6 110 102-238 23-136 (292)
68 TIGR01108 oadA oxaloacetate de 94.6 0.57 1.2E-05 47.8 12.8 155 42-231 92-250 (582)
69 TIGR02666 moaA molybdenum cofa 94.5 1.6 3.5E-05 40.6 14.7 130 39-207 44-191 (334)
70 TIGR02090 LEU1_arch isopropylm 94.5 1.1 2.4E-05 42.8 13.7 143 42-229 26-180 (363)
71 PRK00915 2-isopropylmalate syn 94.5 0.56 1.2E-05 47.0 12.1 146 42-228 30-187 (513)
72 PRK13397 3-deoxy-7-phosphohept 94.4 1.1 2.4E-05 41.3 13.1 139 50-230 95-249 (250)
73 PRK14042 pyruvate carboxylase 94.4 0.81 1.8E-05 46.9 13.2 175 23-231 75-255 (596)
74 TIGR02109 PQQ_syn_pqqE coenzym 94.4 1.5 3.2E-05 41.0 14.1 128 39-205 38-180 (358)
75 cd02810 DHOD_DHPD_FMN Dihydroo 94.3 0.58 1.3E-05 42.5 11.1 79 41-125 111-200 (289)
76 PRK09282 pyruvate carboxylase 94.3 0.73 1.6E-05 47.1 12.8 153 41-230 96-254 (592)
77 PRK09058 coproporphyrinogen II 94.2 0.39 8.5E-06 47.0 10.2 124 53-204 114-249 (449)
78 PRK14040 oxaloacetate decarbox 94.1 1.5 3.2E-05 45.0 14.5 151 42-229 98-254 (593)
79 PRK12581 oxaloacetate decarbox 94.1 1.7 3.6E-05 43.5 14.5 171 24-231 85-264 (468)
80 COG3623 SgaU Putative L-xylulo 94.1 0.25 5.5E-06 45.6 8.0 59 91-150 9-74 (287)
81 PRK14040 oxaloacetate decarbox 94.0 0.51 1.1E-05 48.3 10.9 96 102-228 98-193 (593)
82 PRK05301 pyrroloquinoline quin 94.0 1.2 2.7E-05 42.0 12.9 129 39-206 47-190 (378)
83 PRK12344 putative alpha-isopro 94.0 0.63 1.4E-05 46.8 11.4 170 21-225 70-253 (524)
84 PRK14041 oxaloacetate decarbox 94.0 0.68 1.5E-05 46.1 11.5 146 50-230 105-253 (467)
85 cd04743 NPD_PKS 2-Nitropropane 93.9 0.55 1.2E-05 44.7 10.3 114 42-207 18-132 (320)
86 PRK12331 oxaloacetate decarbox 93.9 0.58 1.3E-05 46.3 10.8 96 102-228 97-192 (448)
87 PRK00164 moaA molybdenum cofac 93.9 0.91 2E-05 42.1 11.6 130 39-207 50-196 (331)
88 PRK07259 dihydroorotate dehydr 93.9 1.1 2.4E-05 41.2 12.0 78 41-125 104-193 (301)
89 cd06556 ICL_KPHMT Members of t 93.7 0.56 1.2E-05 42.7 9.6 96 108-229 96-191 (240)
90 PRK12330 oxaloacetate decarbox 93.7 0.58 1.3E-05 47.0 10.5 97 101-228 97-193 (499)
91 COG0159 TrpA Tryptophan syntha 93.7 1.2 2.6E-05 41.5 11.8 147 41-227 31-199 (265)
92 cd07943 DRE_TIM_HOA 4-hydroxy- 93.6 0.73 1.6E-05 41.7 10.2 91 105-228 89-179 (263)
93 PRK08195 4-hyroxy-2-oxovalerat 93.6 0.63 1.4E-05 44.2 10.1 91 105-228 92-182 (337)
94 PRK07094 biotin synthase; Prov 93.6 3.1 6.7E-05 38.4 14.4 118 53-206 86-216 (323)
95 PRK00311 panB 3-methyl-2-oxobu 93.5 0.36 7.8E-06 44.6 8.2 86 104-206 97-182 (264)
96 TIGR02660 nifV_homocitr homoci 93.5 1.3 2.9E-05 42.2 12.2 140 42-228 27-180 (365)
97 PRK04147 N-acetylneuraminate l 93.4 0.94 2E-05 41.7 10.6 111 102-239 25-140 (293)
98 COG2896 MoaA Molybdenum cofact 93.4 1.2 2.7E-05 42.4 11.6 134 39-207 44-189 (322)
99 cd02801 DUS_like_FMN Dihydrour 93.3 1.8 3.8E-05 37.6 11.8 96 40-141 66-180 (231)
100 PRK13111 trpA tryptophan synth 93.3 1.3 2.9E-05 40.6 11.4 101 41-148 26-147 (258)
101 cd00952 CHBPH_aldolase Trans-o 93.2 1.4 3E-05 41.1 11.6 112 102-239 30-145 (309)
102 cd06557 KPHMT-like Ketopantoat 93.2 0.46 1E-05 43.7 8.2 86 104-206 94-179 (254)
103 cd06547 GH85_ENGase Endo-beta- 93.2 0.34 7.4E-06 46.2 7.6 179 51-238 30-242 (339)
104 PRK00915 2-isopropylmalate syn 92.9 0.68 1.5E-05 46.4 9.7 142 54-226 93-249 (513)
105 PRK05692 hydroxymethylglutaryl 92.9 0.79 1.7E-05 42.5 9.4 97 107-228 85-193 (287)
106 PLN02746 hydroxymethylglutaryl 92.9 0.84 1.8E-05 43.8 9.8 149 42-228 72-235 (347)
107 cd04726 KGPDC_HPS 3-Keto-L-gul 92.9 1.1 2.5E-05 38.1 9.8 94 39-147 11-107 (202)
108 PLN03228 methylthioalkylmalate 92.8 1.3 2.7E-05 44.7 11.3 145 54-227 182-340 (503)
109 TIGR02317 prpB methylisocitrat 92.8 1.1 2.4E-05 41.9 10.2 122 72-229 62-197 (285)
110 PF03060 NMO: Nitronate monoox 92.8 1.6 3.5E-05 41.0 11.5 95 92-229 92-190 (330)
111 cd07939 DRE_TIM_NifV Streptomy 92.7 1 2.2E-05 40.7 9.6 141 41-228 23-177 (259)
112 TIGR03128 RuMP_HxlA 3-hexulose 92.6 4.3 9.4E-05 34.8 13.1 69 42-124 68-136 (206)
113 PRK09282 pyruvate carboxylase 92.6 1 2.3E-05 46.0 10.6 96 102-228 97-192 (592)
114 PRK12330 oxaloacetate decarbox 92.6 1.5 3.3E-05 44.1 11.5 172 24-231 77-258 (499)
115 COG0084 TatD Mg-dependent DNas 92.4 3.1 6.8E-05 38.3 12.6 170 20-240 25-207 (256)
116 COG1082 IolE Sugar phosphate i 92.4 0.86 1.9E-05 40.1 8.7 91 101-207 15-106 (274)
117 PF00701 DHDPS: Dihydrodipicol 92.3 2.7 5.9E-05 38.3 12.1 78 102-206 23-104 (289)
118 PRK00230 orotidine 5'-phosphat 92.3 0.67 1.4E-05 41.5 7.9 42 182-226 184-225 (230)
119 cd04729 NanE N-acetylmannosami 92.3 1.3 2.8E-05 38.8 9.5 90 105-229 83-177 (219)
120 PLN02951 Molybderin biosynthes 92.3 4.9 0.00011 38.6 14.2 130 39-207 91-237 (373)
121 TIGR02321 Pphn_pyruv_hyd phosp 92.2 4.2 9.1E-05 38.1 13.3 134 70-237 62-213 (290)
122 cd04724 Tryptophan_synthase_al 92.2 4.4 9.6E-05 36.4 13.1 101 41-148 14-134 (242)
123 TIGR00674 dapA dihydrodipicoli 92.2 2.3 5E-05 38.9 11.4 75 102-206 20-101 (285)
124 cd00954 NAL N-Acetylneuraminic 92.1 3.2 6.9E-05 38.1 12.2 111 102-238 22-137 (288)
125 cd00951 KDGDH 5-dehydro-4-deox 92.0 2.9 6.4E-05 38.4 12.0 118 102-251 22-174 (289)
126 PRK09856 fructoselysine 3-epim 92.0 0.65 1.4E-05 41.4 7.5 91 102-206 14-111 (275)
127 PRK09989 hypothetical protein; 92.0 1.3 2.8E-05 39.5 9.3 43 102-148 16-58 (258)
128 TIGR00222 panB 3-methyl-2-oxob 91.9 1.5 3.3E-05 40.7 9.9 91 92-206 91-181 (263)
129 PRK12344 putative alpha-isopro 91.9 2.1 4.5E-05 43.2 11.6 153 42-228 31-196 (524)
130 PLN02321 2-isopropylmalate syn 91.8 1.1 2.4E-05 46.3 9.7 127 72-227 212-341 (632)
131 TIGR01108 oadA oxaloacetate de 91.8 1.7 3.7E-05 44.4 11.0 96 102-228 92-187 (582)
132 PRK03620 5-dehydro-4-deoxygluc 91.8 2.6 5.7E-05 39.0 11.5 123 102-253 29-183 (303)
133 TIGR03249 KdgD 5-dehydro-4-deo 91.8 3.6 7.9E-05 37.9 12.3 123 102-253 27-181 (296)
134 TIGR01211 ELP3 histone acetylt 91.6 1.6 3.4E-05 44.2 10.4 135 47-206 127-296 (522)
135 TIGR01361 DAHP_synth_Bsub phos 91.6 3.4 7.3E-05 37.9 11.8 136 51-228 106-257 (260)
136 PRK14041 oxaloacetate decarbox 91.6 1.9 4.1E-05 43.0 10.9 96 102-228 96-191 (467)
137 cd07948 DRE_TIM_HCS Saccharomy 91.5 5.3 0.00011 36.6 13.0 143 41-228 25-179 (262)
138 TIGR02313 HpaI-NOT-DapA 2,4-di 91.5 2.9 6.2E-05 38.7 11.4 108 102-238 22-136 (294)
139 TIGR00683 nanA N-acetylneurami 91.5 3.2 6.9E-05 38.3 11.7 79 102-206 22-104 (290)
140 COG0157 NadC Nicotinate-nucleo 91.5 0.89 1.9E-05 42.6 7.9 117 72-238 113-240 (280)
141 TIGR00973 leuA_bact 2-isopropy 91.5 1.1 2.4E-05 44.7 9.2 142 54-226 90-246 (494)
142 cd04730 NPD_like 2-Nitropropan 91.4 1.8 4E-05 37.7 9.5 108 47-207 22-131 (236)
143 PRK08649 inosine 5-monophospha 91.3 1.5 3.3E-05 42.3 9.6 95 70-207 118-216 (368)
144 TIGR02495 NrdG2 anaerobic ribo 91.3 8 0.00017 32.6 13.4 98 39-147 48-157 (191)
145 PRK13398 3-deoxy-7-phosphohept 91.3 6 0.00013 36.5 13.2 137 50-228 107-259 (266)
146 cd07947 DRE_TIM_Re_CS Clostrid 91.2 2.7 5.8E-05 39.0 10.8 156 41-230 78-261 (279)
147 PRK09389 (R)-citramalate synth 91.2 2.2 4.7E-05 42.7 10.9 150 42-227 78-240 (488)
148 cd04740 DHOD_1B_like Dihydroor 91.2 1.2 2.5E-05 40.8 8.3 73 102-204 103-185 (296)
149 cd04740 DHOD_1B_like Dihydroor 91.1 4.5 9.7E-05 36.9 12.1 78 41-125 102-190 (296)
150 cd04731 HisF The cyclase subun 91.1 1.8 3.9E-05 38.4 9.3 102 25-141 71-190 (243)
151 PRK10812 putative DNAse; Provi 91.0 7.2 0.00016 35.7 13.4 168 22-240 30-207 (265)
152 PLN03228 methylthioalkylmalate 91.0 2.1 4.6E-05 43.1 10.6 151 42-228 110-277 (503)
153 cd04738 DHOD_2_like Dihydrooro 91.0 2.6 5.7E-05 39.5 10.8 79 41-127 148-242 (327)
154 TIGR02319 CPEP_Pphonmut carbox 91.0 2.9 6.2E-05 39.3 10.9 125 70-230 64-202 (294)
155 cd00331 IGPS Indole-3-glycerol 90.9 8.8 0.00019 33.4 13.3 123 83-253 72-196 (217)
156 PRK06015 keto-hydroxyglutarate 90.8 3 6.5E-05 37.2 10.3 93 70-212 84-178 (201)
157 TIGR00262 trpA tryptophan synt 90.8 13 0.00028 34.0 17.2 173 41-253 24-222 (256)
158 PRK13957 indole-3-glycerol-pho 90.7 2.7 5.9E-05 38.6 10.3 93 107-238 117-210 (247)
159 TIGR00737 nifR3_yhdG putative 90.6 1.7 3.7E-05 40.4 9.0 113 61-211 108-227 (319)
160 cd02803 OYE_like_FMN_family Ol 90.5 3.6 7.8E-05 37.9 11.0 87 102-207 142-250 (327)
161 PRK11320 prpB 2-methylisocitra 90.5 1.5 3.2E-05 41.2 8.5 117 77-229 72-202 (292)
162 PLN02424 ketopantoate hydroxym 90.5 1.6 3.5E-05 41.8 8.8 83 108-206 121-203 (332)
163 cd02810 DHOD_DHPD_FMN Dihydroo 90.4 2 4.4E-05 38.9 9.1 79 102-207 112-198 (289)
164 PLN02417 dihydrodipicolinate s 90.3 2.2 4.7E-05 39.2 9.3 77 102-207 23-105 (280)
165 cd07940 DRE_TIM_IPMS 2-isoprop 90.3 2.7 5.8E-05 38.2 9.8 141 42-229 24-182 (268)
166 PF01261 AP_endonuc_2: Xylose 90.1 2.1 4.5E-05 35.5 8.3 90 107-207 1-93 (213)
167 cd00331 IGPS Indole-3-glycerol 90.0 2.7 5.9E-05 36.6 9.3 25 188-213 184-208 (217)
168 PRK08898 coproporphyrinogen II 90.0 5.2 0.00011 38.5 11.9 124 52-203 72-206 (394)
169 cd02803 OYE_like_FMN_family Ol 89.9 0.64 1.4E-05 42.9 5.5 106 70-210 192-315 (327)
170 PRK06801 hypothetical protein; 89.8 14 0.0003 34.6 14.3 109 103-229 86-203 (286)
171 PRK04302 triosephosphate isome 89.8 3.6 7.7E-05 36.4 9.9 45 104-148 75-119 (223)
172 PRK07259 dihydroorotate dehydr 89.7 1.9 4.2E-05 39.6 8.5 74 102-204 105-188 (301)
173 PRK12581 oxaloacetate decarbox 89.7 4.8 0.0001 40.3 11.7 98 101-229 105-202 (468)
174 PRK09997 hydroxypyruvate isome 89.6 1.7 3.6E-05 38.7 7.8 48 95-148 11-58 (258)
175 TIGR03699 mena_SCO4550 menaqui 89.5 5.5 0.00012 37.2 11.5 110 39-149 73-200 (340)
176 PF00218 IGPS: Indole-3-glycer 89.5 3.2 7E-05 38.2 9.7 112 103-253 119-233 (254)
177 PRK05286 dihydroorotate dehydr 89.5 1.8 3.9E-05 41.0 8.3 79 40-126 156-250 (344)
178 PRK02083 imidazole glycerol ph 89.5 8 0.00017 34.6 12.1 154 25-229 74-248 (253)
179 PRK08185 hypothetical protein; 89.5 13 0.00027 34.9 13.7 148 57-230 42-199 (283)
180 cd02801 DUS_like_FMN Dihydrour 89.4 3.9 8.4E-05 35.5 9.8 102 102-229 68-183 (231)
181 PRK12999 pyruvate carboxylase; 89.4 3.4 7.3E-05 45.5 11.3 102 102-228 628-729 (1146)
182 PRK11858 aksA trans-homoaconit 89.4 4.8 0.00011 38.7 11.2 142 42-228 30-183 (378)
183 TIGR01362 KDO8P_synth 3-deoxy- 89.2 1.7 3.7E-05 40.3 7.7 45 184-228 200-249 (258)
184 cd00946 FBP_aldolase_IIA Class 89.2 9 0.0002 36.9 12.8 135 73-224 77-230 (345)
185 PRK13802 bifunctional indole-3 89.2 5 0.00011 42.0 11.9 108 107-253 126-235 (695)
186 PRK11449 putative deoxyribonuc 89.1 17 0.00038 33.0 14.3 167 22-240 29-209 (258)
187 cd02940 DHPD_FMN Dihydropyrimi 88.8 5.5 0.00012 36.8 10.8 58 62-126 146-205 (299)
188 PRK05718 keto-hydroxyglutarate 88.7 1.1 2.4E-05 40.0 6.0 116 74-235 7-134 (212)
189 PRK14042 pyruvate carboxylase 88.7 4.3 9.3E-05 41.8 10.8 98 101-229 96-193 (596)
190 TIGR03581 EF_0839 conserved hy 88.6 6.1 0.00013 36.1 10.5 95 103-227 137-233 (236)
191 cd00953 KDG_aldolase KDG (2-ke 88.4 3.2 6.9E-05 38.1 8.9 110 99-239 18-131 (279)
192 PRK09389 (R)-citramalate synth 88.4 8.8 0.00019 38.4 12.6 143 42-229 28-182 (488)
193 PF09370 TIM-br_sig_trns: TIM- 88.4 2.3 5E-05 39.7 8.0 70 102-206 96-178 (268)
194 cd00947 TBP_aldolase_IIB Tagat 88.3 22 0.00047 33.2 14.4 105 105-229 83-196 (276)
195 cd07941 DRE_TIM_LeuA3 Desulfob 88.2 4.3 9.4E-05 37.1 9.6 150 42-228 24-189 (273)
196 PRK12999 pyruvate carboxylase; 88.1 5.4 0.00012 44.0 11.8 159 39-230 625-791 (1146)
197 PLN02591 tryptophan synthase 88.1 1.6 3.4E-05 40.0 6.7 104 41-151 16-139 (250)
198 cd04732 HisA HisA. Phosphorib 88.1 4.4 9.5E-05 35.4 9.3 97 102-236 30-127 (234)
199 TIGR00423 radical SAM domain p 88.0 16 0.00035 33.8 13.4 109 39-148 37-163 (309)
200 TIGR01858 tag_bisphos_ald clas 87.8 12 0.00025 35.1 12.3 107 105-230 86-201 (282)
201 PRK05926 hypothetical protein; 87.7 16 0.00034 35.3 13.5 118 59-202 120-253 (370)
202 PLN02446 (5-phosphoribosyl)-5- 87.4 4.4 9.5E-05 37.7 9.1 95 103-235 45-139 (262)
203 PRK13523 NADPH dehydrogenase N 87.3 14 0.0003 35.1 12.8 25 183-207 225-249 (337)
204 CHL00200 trpA tryptophan synth 87.3 10 0.00023 34.9 11.6 106 40-152 28-153 (263)
205 TIGR00736 nifR3_rel_arch TIM-b 87.1 11 0.00023 34.3 11.4 122 68-229 53-190 (231)
206 PRK12737 gatY tagatose-bisphos 86.9 15 0.00033 34.3 12.6 110 105-229 88-202 (284)
207 PF00215 OMPdecase: Orotidine 86.9 1.6 3.6E-05 38.5 5.9 97 39-143 11-111 (226)
208 PRK01130 N-acetylmannosamine-6 86.8 4.7 0.0001 35.3 8.7 97 70-211 105-207 (221)
209 PRK09195 gatY tagatose-bisphos 86.8 28 0.0006 32.7 14.3 105 105-229 88-202 (284)
210 cd04739 DHOD_like Dihydroorota 86.6 2.7 5.9E-05 39.5 7.5 77 102-207 113-197 (325)
211 PRK10415 tRNA-dihydrouridine s 86.6 5 0.00011 37.7 9.3 116 57-211 106-229 (321)
212 COG2513 PrpB PEP phosphonomuta 86.5 5.1 0.00011 37.8 9.1 110 70-207 65-188 (289)
213 PRK12457 2-dehydro-3-deoxyphos 86.5 3.3 7.2E-05 38.9 7.9 153 46-234 99-272 (281)
214 PF04055 Radical_SAM: Radical 86.3 7.1 0.00015 30.5 8.8 96 39-146 29-143 (166)
215 TIGR03234 OH-pyruv-isom hydrox 85.9 1.4 3E-05 38.9 5.0 43 102-148 15-57 (254)
216 PRK07998 gatY putative fructos 85.9 25 0.00054 33.0 13.4 161 41-230 4-200 (283)
217 smart00642 Aamy Alpha-amylase 85.8 2 4.4E-05 36.6 5.7 49 106-154 24-94 (166)
218 PRK05718 keto-hydroxyglutarate 85.7 7.9 0.00017 34.6 9.6 92 72-213 97-190 (212)
219 cd02940 DHPD_FMN Dihydropyrimi 85.7 5.7 0.00012 36.7 9.1 74 102-204 114-199 (299)
220 TIGR00973 leuA_bact 2-isopropy 85.7 11 0.00023 37.8 11.5 146 42-228 27-184 (494)
221 TIGR01859 fruc_bis_ald_ fructo 85.5 10 0.00022 35.3 10.6 105 105-229 88-200 (282)
222 PRK08508 biotin synthase; Prov 85.5 19 0.00041 33.0 12.3 99 70-205 75-186 (279)
223 cd02932 OYE_YqiM_FMN Old yello 85.4 1.6 3.4E-05 41.0 5.3 40 102-141 242-287 (336)
224 cd07942 DRE_TIM_LeuA Mycobacte 85.2 7.5 0.00016 36.2 9.6 130 72-230 122-266 (284)
225 PRK07114 keto-hydroxyglutarate 85.1 2 4.4E-05 38.8 5.6 91 75-206 8-99 (222)
226 smart00518 AP2Ec AP endonuclea 85.1 6.2 0.00014 35.1 8.8 89 102-206 11-105 (273)
227 PRK08318 dihydropyrimidine deh 85.0 15 0.00033 35.4 12.0 60 60-126 144-205 (420)
228 cd00019 AP2Ec AP endonuclease 84.9 5.4 0.00012 35.8 8.3 88 102-205 11-105 (279)
229 COG1060 ThiH Thiamine biosynth 84.9 1.7 3.8E-05 42.0 5.4 158 17-202 46-216 (370)
230 PRK15108 biotin synthase; Prov 84.8 6.6 0.00014 37.3 9.3 16 183-198 169-184 (345)
231 cd07945 DRE_TIM_CMS Leptospira 84.8 9.2 0.0002 35.4 10.0 143 43-228 25-185 (280)
232 cd00959 DeoC 2-deoxyribose-5-p 84.6 2.5 5.5E-05 36.9 5.9 128 39-205 15-151 (203)
233 PRK08673 3-deoxy-7-phosphohept 84.6 7 0.00015 37.4 9.3 44 185-228 277-325 (335)
234 PRK08318 dihydropyrimidine deh 84.5 5.2 0.00011 38.6 8.5 74 102-204 114-199 (420)
235 PRK15452 putative protease; Pr 84.4 20 0.00044 35.5 12.7 88 39-142 12-107 (443)
236 PRK08610 fructose-bisphosphate 84.3 16 0.00035 34.2 11.4 165 42-230 5-204 (286)
237 smart00481 POLIIIAc DNA polyme 84.1 2.9 6.2E-05 29.7 5.0 46 100-148 14-59 (67)
238 TIGR00126 deoC deoxyribose-pho 84.0 11 0.00023 33.8 9.7 123 39-205 16-152 (211)
239 PRK13587 1-(5-phosphoribosyl)- 84.0 16 0.00035 32.8 10.9 114 23-152 74-201 (234)
240 PRK14024 phosphoribosyl isomer 83.9 15 0.00032 32.9 10.7 100 25-141 75-187 (241)
241 PF01212 Beta_elim_lyase: Beta 83.8 1.1 2.5E-05 41.5 3.6 78 39-122 107-193 (290)
242 cd04739 DHOD_like Dihydroorota 83.6 29 0.00063 32.6 12.9 79 41-127 112-201 (325)
243 PRK08445 hypothetical protein; 83.5 27 0.00059 33.3 12.8 101 49-149 85-201 (348)
244 cd08574 GDPD_GDE_2_3_6 Glycero 83.5 12 0.00027 33.6 10.0 124 41-206 114-252 (252)
245 PF00290 Trp_syntA: Tryptophan 83.5 20 0.00044 33.1 11.5 149 39-227 22-192 (259)
246 cd02930 DCR_FMN 2,4-dienoyl-Co 83.4 28 0.00061 32.9 12.8 22 183-204 222-243 (353)
247 PRK10550 tRNA-dihydrouridine s 83.2 16 0.00035 34.4 11.0 97 108-229 82-194 (312)
248 TIGR02026 BchE magnesium-proto 82.9 34 0.00074 34.0 13.7 120 54-204 240-372 (497)
249 PRK07709 fructose-bisphosphate 82.8 24 0.00051 33.1 11.8 165 41-229 4-203 (285)
250 cd08205 RuBisCO_IV_RLP Ribulos 82.8 3.4 7.5E-05 39.8 6.5 84 100-206 145-231 (367)
251 PRK06552 keto-hydroxyglutarate 82.8 8.1 0.00018 34.5 8.4 90 75-206 6-96 (213)
252 PRK10076 pyruvate formate lyas 82.7 4.3 9.4E-05 36.1 6.6 117 83-233 41-162 (213)
253 cd07938 DRE_TIM_HMGL 3-hydroxy 82.7 10 0.00022 34.9 9.3 147 42-228 24-187 (274)
254 TIGR00735 hisF imidazoleglycer 82.5 18 0.00038 32.6 10.6 99 102-238 31-130 (254)
255 TIGR01501 MthylAspMutase methy 82.5 6.1 0.00013 33.0 7.1 94 39-145 17-112 (134)
256 cd02933 OYE_like_FMN Old yello 82.5 34 0.00073 32.5 12.9 46 183-228 239-284 (338)
257 PRK09427 bifunctional indole-3 82.5 6.3 0.00014 39.2 8.3 93 107-238 125-218 (454)
258 PF01301 Glyco_hydro_35: Glyco 82.4 3 6.5E-05 39.3 5.8 53 100-152 23-85 (319)
259 PRK05286 dihydroorotate dehydr 82.4 10 0.00022 36.0 9.4 80 102-207 155-247 (344)
260 PRK10415 tRNA-dihydrouridine s 82.3 16 0.00035 34.3 10.7 95 108-229 84-194 (321)
261 PRK10550 tRNA-dihydrouridine s 82.3 13 0.00029 34.9 10.1 78 58-142 105-192 (312)
262 PRK13125 trpA tryptophan synth 82.2 37 0.00081 30.4 19.3 108 40-152 17-138 (244)
263 PRK09196 fructose-1,6-bisphosp 82.2 2.6 5.6E-05 40.6 5.3 115 72-207 125-279 (347)
264 PRK05985 cytosine deaminase; P 82.1 6.8 0.00015 37.0 8.1 76 70-149 191-271 (391)
265 cd01335 Radical_SAM Radical SA 82.1 24 0.00052 28.2 12.0 128 42-206 33-177 (204)
266 PF13714 PEP_mutase: Phosphoen 81.9 2 4.3E-05 39.1 4.2 133 70-235 56-198 (238)
267 TIGR03239 GarL 2-dehydro-3-deo 81.9 6.9 0.00015 35.7 7.8 68 105-205 24-91 (249)
268 PLN02617 imidazole glycerol ph 81.9 13 0.00028 37.9 10.4 113 105-238 271-393 (538)
269 TIGR01210 conserved hypothetic 81.9 18 0.0004 33.8 10.8 134 41-206 53-209 (313)
270 PRK04302 triosephosphate isome 81.9 22 0.00048 31.3 10.8 91 70-206 101-203 (223)
271 COG0413 PanB Ketopantoate hydr 81.9 8.3 0.00018 36.0 8.3 87 103-206 96-182 (268)
272 PF04131 NanE: Putative N-acet 81.8 17 0.00037 32.4 9.9 116 39-206 53-174 (192)
273 PRK13523 NADPH dehydrogenase N 81.8 2.5 5.4E-05 40.1 5.1 119 70-231 193-325 (337)
274 PRK10425 DNase TatD; Provision 81.8 41 0.00089 30.6 13.4 169 22-240 25-205 (258)
275 PRK07565 dihydroorotate dehydr 81.7 36 0.00078 31.9 12.8 26 102-127 178-203 (334)
276 PRK08446 coproporphyrinogen II 81.5 7.5 0.00016 36.7 8.2 116 27-145 54-180 (350)
277 PRK13585 1-(5-phosphoribosyl)- 81.5 17 0.00036 32.0 9.9 143 24-215 75-231 (241)
278 TIGR00977 LeuA_rel 2-isopropyl 81.4 10 0.00022 38.3 9.5 122 73-225 125-250 (526)
279 TIGR01182 eda Entner-Doudoroff 81.3 6.6 0.00014 35.0 7.3 68 102-206 21-88 (204)
280 PRK05927 hypothetical protein; 81.3 39 0.00085 32.3 13.0 94 59-155 98-208 (350)
281 TIGR03700 mena_SCO4494 putativ 81.2 40 0.00087 31.9 13.0 114 61-200 103-232 (351)
282 PRK07360 FO synthase subunit 2 81.2 47 0.001 31.8 13.5 136 39-201 92-246 (371)
283 COG0119 LeuA Isopropylmalate/h 81.1 17 0.00037 35.7 10.6 152 42-222 81-240 (409)
284 COG0635 HemN Coproporphyrinoge 81.1 27 0.00059 34.2 12.0 126 53-206 87-225 (416)
285 TIGR00977 LeuA_rel 2-isopropyl 81.1 8 0.00017 39.1 8.6 151 42-228 27-192 (526)
286 cd02932 OYE_YqiM_FMN Old yello 81.0 22 0.00047 33.4 11.0 47 183-229 239-290 (336)
287 PRK12857 fructose-1,6-bisphosp 80.9 33 0.00071 32.1 12.0 109 105-229 88-202 (284)
288 cd04722 TIM_phosphate_binding 80.8 28 0.00061 28.1 12.9 104 42-150 13-121 (200)
289 COG0329 DapA Dihydrodipicolina 80.6 23 0.00049 33.1 10.9 112 102-239 26-140 (299)
290 TIGR00737 nifR3_yhdG putative 80.5 14 0.00031 34.3 9.5 100 102-229 76-192 (319)
291 cd02874 GH18_CFLE_spore_hydrol 80.5 6.1 0.00013 36.3 7.0 92 46-141 18-128 (313)
292 TIGR00167 cbbA ketose-bisphosp 80.4 28 0.00061 32.6 11.4 110 104-229 90-206 (288)
293 cd04731 HisF The cyclase subun 80.4 20 0.00044 31.7 10.1 96 102-238 28-127 (243)
294 PRK13586 1-(5-phosphoribosyl)- 80.4 16 0.00034 33.0 9.4 93 105-235 34-126 (232)
295 PRK11815 tRNA-dihydrouridine s 80.4 9.3 0.0002 36.1 8.4 98 107-228 83-203 (333)
296 PF01081 Aldolase: KDPG and KH 80.3 4.2 9E-05 36.1 5.6 68 102-206 21-88 (196)
297 PRK02227 hypothetical protein; 80.3 47 0.001 30.6 12.5 153 41-229 68-234 (238)
298 PF01026 TatD_DNase: TatD rela 80.3 24 0.00052 31.5 10.7 170 22-240 24-207 (255)
299 PLN02460 indole-3-glycerol-pho 80.3 17 0.00036 35.1 10.0 112 103-253 191-312 (338)
300 PRK14847 hypothetical protein; 80.2 16 0.00035 35.0 9.9 146 55-231 125-298 (333)
301 PRK13396 3-deoxy-7-phosphohept 80.0 13 0.00027 36.1 9.2 54 187-240 288-347 (352)
302 cd00945 Aldolase_Class_I Class 79.9 9.6 0.00021 31.5 7.5 71 101-207 13-87 (201)
303 PRK00125 pyrF orotidine 5'-pho 79.9 8.7 0.00019 35.8 7.8 94 42-143 42-141 (278)
304 COG0269 SgbH 3-hexulose-6-phos 79.8 29 0.00063 31.6 10.8 133 41-227 71-211 (217)
305 TIGR01235 pyruv_carbox pyruvat 79.7 6.2 0.00014 43.5 7.8 114 67-209 622-768 (1143)
306 cd04738 DHOD_2_like Dihydrooro 79.7 14 0.0003 34.7 9.2 81 102-207 146-238 (327)
307 TIGR03822 AblA_like_2 lysine-2 79.7 53 0.0011 30.8 13.1 170 41-239 122-308 (321)
308 TIGR00238 KamA family protein. 79.5 30 0.00065 32.7 11.4 128 41-200 145-283 (331)
309 PRK12677 xylose isomerase; Pro 79.3 10 0.00023 36.7 8.5 122 57-206 6-135 (384)
310 PF04476 DUF556: Protein of un 79.2 12 0.00026 34.4 8.3 144 42-228 69-234 (235)
311 PRK02083 imidazole glycerol ph 79.1 23 0.00049 31.7 10.1 99 102-238 31-130 (253)
312 cd02809 alpha_hydroxyacid_oxid 79.0 11 0.00023 34.9 8.1 95 100-228 128-224 (299)
313 TIGR01304 IMP_DH_rel_2 IMP deh 79.0 17 0.00036 35.4 9.7 94 68-203 117-214 (369)
314 cd06543 GH18_PF-ChiA-like PF-C 78.9 5.8 0.00013 37.1 6.4 74 69-142 53-136 (294)
315 PRK13399 fructose-1,6-bisphosp 78.9 3.6 7.9E-05 39.6 5.1 115 72-207 125-279 (347)
316 COG0134 TrpC Indole-3-glycerol 78.7 19 0.0004 33.5 9.5 108 107-253 122-231 (254)
317 TIGR00587 nfo apurinic endonuc 78.7 40 0.00087 30.5 11.7 136 102-251 12-167 (274)
318 COG1105 FruK Fructose-1-phosph 78.2 21 0.00045 34.0 9.9 177 26-232 101-308 (310)
319 PRK12595 bifunctional 3-deoxy- 78.2 31 0.00067 33.3 11.2 138 49-228 197-350 (360)
320 PRK08255 salicylyl-CoA 5-hydro 78.1 14 0.0003 38.8 9.5 23 183-205 636-658 (765)
321 PF07071 DUF1341: Protein of u 77.6 7.2 0.00016 35.3 6.2 71 103-203 137-207 (218)
322 PRK10558 alpha-dehydro-beta-de 77.3 10 0.00022 34.8 7.3 68 105-205 31-98 (256)
323 cd02931 ER_like_FMN Enoate red 77.2 14 0.0003 35.6 8.6 26 182-207 249-274 (382)
324 PRK12738 kbaY tagatose-bisphos 77.0 37 0.0008 31.9 11.1 163 42-229 5-202 (286)
325 cd02875 GH18_chitobiase Chitob 76.9 6.2 0.00013 37.6 6.1 50 72-123 66-121 (358)
326 cd04723 HisA_HisF Phosphoribos 76.8 20 0.00044 32.0 9.0 100 102-240 36-135 (233)
327 cd04732 HisA HisA. Phosphorib 76.6 14 0.00031 32.1 7.9 140 25-213 73-226 (234)
328 PTZ00170 D-ribulose-5-phosphat 76.4 40 0.00086 30.1 10.8 136 39-226 77-219 (228)
329 PRK06015 keto-hydroxyglutarate 76.4 11 0.00025 33.5 7.2 68 102-206 17-84 (201)
330 PRK13758 anaerobic sulfatase-m 76.3 68 0.0015 30.0 12.9 79 56-145 60-159 (370)
331 TIGR00010 hydrolase, TatD fami 76.1 28 0.00061 30.0 9.6 46 189-240 158-203 (252)
332 PRK13745 anaerobic sulfatase-m 76.1 32 0.00069 33.2 10.8 96 39-145 49-168 (412)
333 PRK05835 fructose-bisphosphate 76.0 41 0.00089 32.0 11.2 168 43-230 5-205 (307)
334 TIGR01769 GGGP geranylgeranylg 76.0 9.4 0.0002 34.1 6.6 68 101-204 134-204 (205)
335 cd04734 OYE_like_3_FMN Old yel 76.0 14 0.00031 35.0 8.2 56 70-126 192-254 (343)
336 PRK13585 1-(5-phosphoribosyl)- 76.0 27 0.00059 30.7 9.5 97 102-236 33-130 (241)
337 PLN02951 Molybderin biosynthes 75.7 44 0.00096 32.1 11.6 114 66-206 89-206 (373)
338 PRK10128 2-keto-3-deoxy-L-rham 75.7 13 0.00028 34.5 7.6 88 72-204 9-96 (267)
339 PRK13347 coproporphyrinogen II 75.7 14 0.00031 36.1 8.4 122 27-148 106-237 (453)
340 PF01136 Peptidase_U32: Peptid 75.6 18 0.0004 31.6 8.3 34 102-145 3-36 (233)
341 PRK13125 trpA tryptophan synth 75.4 14 0.00031 33.1 7.7 22 188-210 197-218 (244)
342 PRK09722 allulose-6-phosphate 75.4 42 0.00091 30.4 10.7 137 28-224 67-215 (229)
343 TIGR02129 hisA_euk phosphoribo 75.4 23 0.0005 32.8 9.1 94 104-237 41-134 (253)
344 cd00381 IMPDH IMPDH: The catal 75.1 21 0.00046 33.6 9.1 70 102-205 94-163 (325)
345 TIGR00539 hemN_rel putative ox 75.0 14 0.0003 34.9 7.9 118 27-145 54-182 (360)
346 PRK07379 coproporphyrinogen II 74.9 17 0.00036 35.2 8.5 119 27-145 69-197 (400)
347 PRK07084 fructose-bisphosphate 74.8 50 0.0011 31.6 11.5 165 41-228 10-215 (321)
348 PRK05660 HemN family oxidoredu 74.8 18 0.00038 34.6 8.6 119 27-145 61-189 (378)
349 PRK09061 D-glutamate deacylase 74.6 20 0.00043 35.8 9.2 105 43-153 171-285 (509)
350 cd04725 OMP_decarboxylase_like 74.6 16 0.00035 32.2 7.7 93 39-143 9-102 (216)
351 PRK13307 bifunctional formalde 74.6 38 0.00083 33.2 10.9 38 188-228 341-378 (391)
352 PRK09234 fbiC FO synthase; Rev 74.5 43 0.00094 36.0 12.1 132 42-200 558-710 (843)
353 TIGR03572 WbuZ glycosyl amidat 74.5 59 0.0013 28.5 11.6 105 25-142 74-195 (232)
354 TIGR01740 pyrF orotidine 5'-ph 74.4 17 0.00037 31.9 7.8 93 39-143 9-102 (213)
355 cd02812 PcrB_like PcrB_like pr 74.3 12 0.00027 33.7 6.9 74 100-211 134-209 (219)
356 PRK08091 ribulose-phosphate 3- 74.1 35 0.00075 31.0 9.9 81 1-94 47-133 (228)
357 PRK13307 bifunctional formalde 73.9 13 0.00029 36.3 7.6 97 39-148 183-281 (391)
358 PRK15447 putative protease; Pr 73.9 38 0.00082 31.5 10.3 90 41-146 15-110 (301)
359 PLN02858 fructose-bisphosphate 73.8 41 0.00089 38.0 12.2 179 24-228 1070-1297(1378)
360 cd06557 KPHMT-like Ketopantoat 73.4 17 0.00037 33.5 7.8 75 110-207 28-113 (254)
361 TIGR00433 bioB biotin syntheta 73.3 44 0.00096 30.1 10.5 148 70-253 98-268 (296)
362 cd04726 KGPDC_HPS 3-Keto-L-gul 73.2 56 0.0012 27.6 11.7 25 188-213 169-193 (202)
363 TIGR03471 HpnJ hopanoid biosyn 73.1 97 0.0021 30.3 14.0 117 54-204 246-372 (472)
364 cd06545 GH18_3CO4_chitinase Th 72.9 11 0.00024 33.7 6.4 71 70-141 46-126 (253)
365 PF01791 DeoC: DeoC/LacD famil 72.9 4.9 0.00011 35.7 4.0 156 42-229 20-189 (236)
366 PRK09249 coproporphyrinogen II 72.7 17 0.00037 35.6 8.1 119 27-145 105-233 (453)
367 cd08210 RLP_RrRLP Ribulose bis 72.6 14 0.00029 35.8 7.3 83 102-207 142-227 (364)
368 PLN02540 methylenetetrahydrofo 72.6 49 0.0011 34.1 11.5 137 54-206 29-177 (565)
369 PF01207 Dus: Dihydrouridine s 72.6 19 0.00042 33.6 8.1 105 100-229 65-183 (309)
370 TIGR01521 FruBisAldo_II_B fruc 72.5 8.8 0.00019 37.1 5.9 65 57-125 93-195 (347)
371 TIGR01037 pyrD_sub1_fam dihydr 72.3 23 0.00049 32.4 8.4 70 107-205 109-189 (300)
372 cd00452 KDPG_aldolase KDPG and 72.1 22 0.00049 30.4 7.9 18 188-205 154-171 (190)
373 PRK06096 molybdenum transport 72.1 15 0.00032 34.5 7.2 42 188-238 199-242 (284)
374 TIGR00742 yjbN tRNA dihydrouri 71.6 35 0.00077 32.2 9.7 81 57-141 96-191 (318)
375 PF10566 Glyco_hydro_97: Glyco 71.5 8.1 0.00018 36.0 5.3 46 101-146 32-89 (273)
376 cd01011 nicotinamidase Nicotin 71.3 12 0.00027 32.2 6.1 65 75-146 129-195 (196)
377 PRK11815 tRNA-dihydrouridine s 71.3 19 0.00041 34.1 7.8 65 57-124 106-174 (333)
378 PRK00748 1-(5-phosphoribosyl)- 71.2 45 0.00098 29.0 9.7 137 22-204 71-219 (233)
379 PRK07028 bifunctional hexulose 71.2 38 0.00082 32.9 10.0 128 71-242 95-229 (430)
380 COG3010 NanE Putative N-acetyl 71.1 64 0.0014 29.5 10.6 117 43-206 88-210 (229)
381 PLN02428 lipoic acid synthase 70.8 29 0.00063 33.5 9.0 75 104-204 195-281 (349)
382 cd04747 OYE_like_5_FMN Old yel 70.8 25 0.00055 33.8 8.6 23 182-204 232-254 (361)
383 TIGR02311 HpaI 2,4-dihydroxyhe 70.7 22 0.00047 32.3 7.8 69 104-205 23-91 (249)
384 COG0535 Predicted Fe-S oxidore 70.7 81 0.0018 28.4 12.3 127 43-206 56-194 (347)
385 PRK08208 coproporphyrinogen II 70.6 26 0.00056 34.1 8.8 116 27-145 94-223 (430)
386 PRK00278 trpC indole-3-glycero 70.6 46 0.001 30.3 9.9 25 188-213 223-247 (260)
387 PF00128 Alpha-amylase: Alpha 70.6 6.3 0.00014 34.5 4.2 51 103-153 6-75 (316)
388 TIGR00970 leuA_yeast 2-isoprop 70.3 38 0.00082 34.6 10.1 131 72-229 147-293 (564)
389 COG0167 PyrD Dihydroorotate de 70.2 39 0.00085 32.1 9.6 74 102-204 110-192 (310)
390 TIGR02631 xylA_Arthro xylose i 70.1 10 0.00022 36.7 5.8 47 102-148 33-86 (382)
391 PRK08323 phenylhydantoinase; V 70.0 61 0.0013 31.1 11.1 97 52-153 140-262 (459)
392 TIGR01235 pyruv_carbox pyruvat 69.9 43 0.00092 37.2 11.0 102 102-228 626-727 (1143)
393 PLN02495 oxidoreductase, actin 69.9 30 0.00065 33.8 9.0 74 102-204 128-213 (385)
394 PRK07226 fructose-bisphosphate 69.8 33 0.00072 31.2 8.8 156 21-213 71-238 (267)
395 COG1038 PycA Pyruvate carboxyl 69.6 11 0.00024 40.6 6.2 68 72-148 69-138 (1149)
396 KOG2949 Ketopantoate hydroxyme 69.6 28 0.00061 32.4 8.1 160 17-206 31-206 (306)
397 PRK08645 bifunctional homocyst 69.5 78 0.0017 32.5 12.3 141 40-206 337-499 (612)
398 cd04735 OYE_like_4_FMN Old yel 69.3 7 0.00015 37.1 4.5 109 61-204 186-312 (353)
399 PF02548 Pantoate_transf: Keto 69.3 12 0.00026 34.9 5.8 138 42-206 27-183 (261)
400 COG1902 NemA NADH:flavin oxido 69.3 21 0.00046 34.5 7.7 88 103-204 148-257 (363)
401 PTZ00331 alpha/beta hydrolase; 69.3 11 0.00025 33.1 5.5 64 77-147 139-204 (212)
402 PLN02826 dihydroorotate dehydr 69.2 71 0.0015 31.4 11.4 131 39-204 202-369 (409)
403 TIGR01182 eda Entner-Doudoroff 69.2 11 0.00024 33.6 5.4 91 71-211 89-181 (204)
404 cd00740 MeTr MeTr subgroup of 69.1 52 0.0011 30.0 9.9 97 41-140 30-147 (252)
405 PRK08444 hypothetical protein; 69.1 1.1E+02 0.0024 29.3 14.2 95 54-148 97-207 (353)
406 TIGR01302 IMP_dehydrog inosine 68.9 13 0.00028 36.6 6.3 67 107-206 279-357 (450)
407 PRK06256 biotin synthase; Vali 68.9 58 0.0013 30.2 10.4 70 72-145 151-231 (336)
408 CHL00073 chlN photochlorophyll 68.7 28 0.00062 34.8 8.7 172 40-254 207-394 (457)
409 PRK09240 thiH thiamine biosynt 68.6 1.1E+02 0.0024 29.2 12.6 105 39-155 105-226 (371)
410 cd06542 GH18_EndoS-like Endo-b 68.5 26 0.00056 31.1 7.7 94 47-141 21-139 (255)
411 TIGR00007 phosphoribosylformim 68.2 59 0.0013 28.3 9.8 103 25-142 72-187 (230)
412 PLN02389 biotin synthase 68.1 68 0.0015 31.1 11.0 75 70-155 153-236 (379)
413 PF01487 DHquinase_I: Type I 3 68.0 83 0.0018 27.5 11.0 84 103-207 9-97 (224)
414 PRK13209 L-xylulose 5-phosphat 67.9 27 0.00059 31.2 7.8 108 41-151 24-159 (283)
415 TIGR01163 rpe ribulose-phospha 67.6 20 0.00043 30.5 6.5 41 101-141 11-53 (210)
416 PRK07565 dihydroorotate dehydr 67.5 38 0.00083 31.8 8.9 77 102-207 115-199 (334)
417 PF02548 Pantoate_transf: Keto 67.2 90 0.0019 29.1 11.1 75 108-207 30-117 (261)
418 PRK06806 fructose-bisphosphate 67.1 1.1E+02 0.0024 28.5 12.1 105 105-229 88-200 (281)
419 cd01299 Met_dep_hydrolase_A Me 66.9 35 0.00077 31.1 8.5 113 23-202 53-197 (342)
420 TIGR01949 AroFGH_arch predicte 66.9 56 0.0012 29.4 9.6 156 20-214 67-235 (258)
421 PF00977 His_biosynth: Histidi 66.8 13 0.00029 33.1 5.5 90 110-237 38-128 (229)
422 cd06556 ICL_KPHMT Members of t 66.6 40 0.00087 30.7 8.6 72 111-206 29-110 (240)
423 TIGR00735 hisF imidazoleglycer 66.6 98 0.0021 27.8 13.0 108 25-141 74-196 (254)
424 PRK08255 salicylyl-CoA 5-hydro 66.6 11 0.00024 39.4 5.6 123 69-231 601-737 (765)
425 TIGR01334 modD putative molybd 66.5 21 0.00045 33.4 6.8 42 188-238 198-241 (277)
426 PRK06852 aldolase; Validated 66.3 60 0.0013 30.8 10.0 144 56-214 96-273 (304)
427 PRK05904 coproporphyrinogen II 66.3 34 0.00074 32.6 8.5 116 27-145 59-185 (353)
428 PRK12313 glycogen branching en 66.1 13 0.00029 38.0 6.0 51 103-153 173-243 (633)
429 cd01310 TatD_DNAse TatD like p 65.8 48 0.001 28.5 8.7 46 190-241 159-204 (251)
430 cd04733 OYE_like_2_FMN Old yel 65.7 20 0.00042 33.7 6.6 23 103-125 238-260 (338)
431 PRK13306 ulaD 3-keto-L-gulonat 65.7 18 0.00039 32.1 6.1 93 39-144 14-107 (216)
432 PTZ00170 D-ribulose-5-phosphat 65.6 23 0.0005 31.6 6.8 77 101-207 19-97 (228)
433 PHA02754 hypothetical protein; 65.4 4.6 9.9E-05 29.8 1.8 20 40-59 20-39 (67)
434 PF07745 Glyco_hydro_53: Glyco 65.1 29 0.00062 33.3 7.7 136 102-250 25-192 (332)
435 COG5016 Pyruvate/oxaloacetate 65.0 17 0.00037 36.2 6.2 39 103-141 158-196 (472)
436 TIGR03820 lys_2_3_AblA lysine- 64.9 83 0.0018 31.2 11.0 174 39-239 139-326 (417)
437 cd01314 D-HYD D-hydantoinases 64.9 71 0.0015 30.6 10.4 94 54-152 144-263 (447)
438 TIGR00538 hemN oxygen-independ 64.9 37 0.00081 33.2 8.6 109 39-147 117-235 (455)
439 PRK07315 fructose-bisphosphate 64.9 1.1E+02 0.0025 28.5 11.5 162 41-228 4-200 (293)
440 COG0119 LeuA Isopropylmalate/h 64.9 97 0.0021 30.5 11.4 145 43-229 29-185 (409)
441 cd04741 DHOD_1A_like Dihydroor 64.9 58 0.0013 30.1 9.5 63 114-203 119-191 (294)
442 TIGR01515 branching_enzym alph 64.7 15 0.00032 37.6 6.1 103 104-206 160-296 (613)
443 PRK06552 keto-hydroxyglutarate 64.7 44 0.00095 29.8 8.3 88 70-207 96-185 (213)
444 TIGR00542 hxl6Piso_put hexulos 64.7 78 0.0017 28.3 10.1 82 69-150 51-153 (279)
445 cd01948 EAL EAL domain. This d 64.7 16 0.00035 31.0 5.4 80 22-118 142-227 (240)
446 PRK15108 biotin synthase; Prov 64.7 1.3E+02 0.0028 28.6 13.4 97 70-203 111-220 (345)
447 COG1243 ELP3 Histone acetyltra 64.6 72 0.0016 32.4 10.5 134 47-207 125-295 (515)
448 PRK09140 2-dehydro-3-deoxy-6-p 64.6 21 0.00045 31.6 6.2 69 102-206 23-91 (206)
449 TIGR00433 bioB biotin syntheta 64.5 79 0.0017 28.5 10.2 69 73-145 123-202 (296)
450 cd04734 OYE_like_3_FMN Old yel 64.5 41 0.00089 31.9 8.6 22 183-204 226-248 (343)
451 PF05913 DUF871: Bacterial pro 64.4 9.8 0.00021 36.7 4.4 61 82-153 2-70 (357)
452 PRK07535 methyltetrahydrofolat 64.4 72 0.0016 29.3 9.9 101 41-144 29-152 (261)
453 cd01315 L-HYD_ALN L-Hydantoina 64.0 1.1E+02 0.0024 29.3 11.5 125 23-152 81-263 (447)
454 PRK00311 panB 3-methyl-2-oxobu 63.9 30 0.00065 32.1 7.4 75 110-207 31-116 (264)
455 TIGR01496 DHPS dihydropteroate 63.8 55 0.0012 29.9 9.0 74 72-145 63-163 (257)
456 PRK09441 cytoplasmic alpha-amy 63.8 14 0.00031 36.3 5.6 51 103-153 24-104 (479)
457 PF03644 Glyco_hydro_85: Glyco 63.7 16 0.00035 34.4 5.7 91 52-145 27-133 (311)
458 PRK00507 deoxyribose-phosphate 63.4 42 0.00091 30.1 8.0 149 39-229 20-177 (221)
459 cd02072 Glm_B12_BD B12 binding 63.4 19 0.00042 29.9 5.4 94 39-145 15-110 (128)
460 smart00518 AP2Ec AP endonuclea 63.3 67 0.0014 28.5 9.3 82 44-125 13-108 (273)
461 PRK01122 potassium-transportin 63.2 20 0.00043 37.6 6.6 61 69-145 447-509 (679)
462 PRK13210 putative L-xylulose 5 63.2 35 0.00076 30.3 7.5 83 69-151 51-154 (284)
463 PRK06256 biotin synthase; Vali 63.1 53 0.0011 30.5 8.9 144 71-253 127-295 (336)
464 PRK09997 hydroxypyruvate isome 63.1 56 0.0012 29.0 8.8 77 72-150 42-144 (258)
465 PRK06978 nicotinate-nucleotide 63.0 36 0.00079 32.2 7.8 41 188-238 215-255 (294)
466 PRK10551 phage resistance prot 63.0 60 0.0013 32.5 9.9 96 43-152 370-475 (518)
467 PF01116 F_bP_aldolase: Fructo 62.9 1.3E+02 0.0029 28.0 11.7 155 58-228 16-203 (287)
468 PRK00230 orotidine 5'-phosphat 62.9 20 0.00043 32.0 5.9 42 103-147 14-57 (230)
469 cd00958 DhnA Class I fructose- 62.8 85 0.0018 27.5 9.8 125 40-204 79-213 (235)
470 COG2008 GLY1 Threonine aldolas 62.7 17 0.00036 35.2 5.6 50 66-121 146-197 (342)
471 TIGR01036 pyrD_sub2 dihydrooro 62.6 42 0.0009 31.9 8.3 79 102-205 152-244 (335)
472 TIGR01093 aroD 3-dehydroquinat 62.6 44 0.00096 29.6 8.0 67 110-204 88-154 (228)
473 PF13380 CoA_binding_2: CoA bi 62.6 11 0.00023 30.2 3.7 41 101-147 66-106 (116)
474 PRK15447 putative protease; Pr 62.5 39 0.00085 31.5 7.9 45 102-146 16-64 (301)
475 PF00696 AA_kinase: Amino acid 62.5 44 0.00096 29.0 7.9 86 129-235 85-177 (242)
476 TIGR02104 pulA_typeI pullulana 62.5 15 0.00032 37.5 5.5 52 102-153 165-252 (605)
477 PRK14010 potassium-transportin 62.4 21 0.00046 37.3 6.7 63 68-146 442-506 (673)
478 PRK10785 maltodextrin glucosid 62.3 15 0.00034 37.4 5.6 50 103-152 181-248 (598)
479 TIGR00676 fadh2 5,10-methylene 62.1 1.3E+02 0.0028 27.5 13.6 140 41-206 15-165 (272)
480 cd00429 RPE Ribulose-5-phospha 62.1 96 0.0021 26.1 11.1 94 39-148 10-110 (211)
481 PLN02447 1,4-alpha-glucan-bran 62.1 15 0.00033 38.9 5.7 50 104-153 254-323 (758)
482 PRK08629 coproporphyrinogen II 62.1 76 0.0017 31.2 10.2 121 51-205 99-234 (433)
483 TIGR03234 OH-pyruv-isom hydrox 62.0 39 0.00084 29.7 7.5 77 72-150 41-143 (254)
484 TIGR02127 pyrF_sub2 orotidine 62.0 40 0.00087 31.1 7.8 95 41-143 41-140 (261)
485 PRK05628 coproporphyrinogen II 61.6 43 0.00093 31.8 8.2 121 27-147 62-192 (375)
486 cd00452 KDPG_aldolase KDPG and 61.2 1E+02 0.0023 26.3 10.2 59 104-205 66-124 (190)
487 TIGR03551 F420_cofH 7,8-dideme 61.0 21 0.00045 33.6 5.9 110 65-199 68-193 (343)
488 cd04741 DHOD_1A_like Dihydroor 61.0 1.4E+02 0.003 27.7 11.2 64 53-124 119-196 (294)
489 PRK07998 gatY putative fructos 60.8 48 0.001 31.1 8.2 53 70-125 115-177 (283)
490 PRK05437 isopentenyl pyrophosp 60.6 1.6E+02 0.0034 28.2 12.1 127 32-204 133-289 (352)
491 PRK06267 hypothetical protein; 60.6 98 0.0021 29.4 10.4 133 53-225 79-227 (350)
492 TIGR01304 IMP_DH_rel_2 IMP deh 60.5 1.1E+02 0.0024 29.7 10.8 84 104-230 102-189 (369)
493 TIGR01919 hisA-trpF 1-(5-phosp 60.3 1.2E+02 0.0025 27.5 10.4 95 27-134 76-186 (243)
494 PRK08207 coproporphyrinogen II 60.2 50 0.0011 33.1 8.7 119 27-145 221-351 (488)
495 PF01261 AP_endonuc_2: Xylose 60.2 4.3 9.2E-05 33.6 1.0 99 54-152 9-134 (213)
496 TIGR00126 deoC deoxyribose-pho 59.9 1.2E+02 0.0026 27.1 10.3 104 102-239 19-128 (211)
497 PRK07428 nicotinate-nucleotide 59.8 18 0.00038 34.0 5.1 42 188-238 206-249 (288)
498 cd04733 OYE_like_2_FMN Old yel 59.6 68 0.0015 30.1 9.1 25 183-207 234-258 (338)
499 PRK09248 putative hydrolase; V 59.5 20 0.00043 31.9 5.2 16 103-118 203-218 (246)
500 COG0800 Eda 2-keto-3-deoxy-6-p 59.3 29 0.00063 31.4 6.2 86 76-206 7-93 (211)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=5.3e-84 Score=581.08 Aligned_cols=215 Identities=40% Similarity=0.711 Sum_probs=178.2
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cH
Q 025344 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (254)
Q Consensus 13 ~l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl 91 (254)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4799999999999999999997 889999999999999999999999999999999999999999999999997 69
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|++.++.
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~------------ 142 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDF------------ 142 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHT------------
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcc------------
Confidence 99999999 9999999999999999999999999999999999999999999999999998654221
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHH
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWF 246 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~ 246 (254)
..|+++||+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+||
T Consensus 143 ---------~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~ 213 (244)
T PF02679_consen 143 ---------SLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWF 213 (244)
T ss_dssp ---------T--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHH
Confidence 225788899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhCCCC
Q 025344 247 IRRYGPKV 254 (254)
Q Consensus 247 I~~~Gp~V 254 (254)
|++|||||
T Consensus 214 I~~~G~~V 221 (244)
T PF02679_consen 214 IKRFGPNV 221 (244)
T ss_dssp HHHH-TT-
T ss_pred HHHhCCCc
Confidence 99999998
No 2
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=1.9e-77 Score=536.33 Aligned_cols=202 Identities=23% Similarity=0.421 Sum_probs=192.8
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHH
Q 025344 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (254)
Q Consensus 26 lT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~ 104 (254)
+|||+|||| |+++++|+|++||+|||++||||||++|||+++|++||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 799999998 778999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+|+++||+|||++|||||||++||+++|+++|++++++||+|+||||+|++.. +. ..++
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~ 133 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTP 133 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCH
Confidence 99999999999999999999999999999999999999999999999997521 11 1258
Q ss_pred HHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCC
Q 025344 185 DLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKV 254 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~qQ~~~I~~~Gp~V 254 (254)
+++|+++++||+|||++|||||| |||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||
T Consensus 134 ~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~V 209 (237)
T TIGR03849 134 DDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDV 209 (237)
T ss_pred HHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCc
Confidence 99999999999999999999995 89999999999999999999999999999999999999999999998
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.8e-73 Score=501.82 Aligned_cols=220 Identities=25% Similarity=0.479 Sum_probs=207.6
Q ss_pred cccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee
Q 025344 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (254)
Q Consensus 8 ~~~f~~-l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v 86 (254)
++.|.- .|.|+.|||.+|+|+|+|||| |++.++|+|++||+|||++||||||++|.+++++++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 356664 467999999999999999998 778999999999999999999999999999999999999999999999
Q ss_pred cCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc
Q 025344 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR 165 (254)
Q Consensus 87 ~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~ 165 (254)
||| |+||+++.|+ ++++|+++|+++||++|||||||++|+.++||++|+++.+.||+|+||+|+|.+. .|+
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~ 148 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPE------SDS 148 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcc------hhh
Confidence 995 7999999999 9999999999999999999999999999999999999999999999999999762 232
Q ss_pred ccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc------cccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 166 AFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD------DVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar------gi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
. + +++++++.+..|++|||++||+||| |||++.|+||++.++.|++++|++|+|||||+
T Consensus 149 ~----l-----------~~~d~~k~i~~dvdaGa~~vi~eAresg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~ 213 (258)
T COG1809 149 A----L-----------SPDDRVKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQ 213 (258)
T ss_pred h----c-----------ChHHHHHHHHHHHHcchHHhhhhhhhhccccCccccccchhhhHHHHHHhcCCchheeeecCC
Confidence 2 2 4888899999999999999999998 88999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCC
Q 025344 240 PRTSEWFIRRYGPKV 254 (254)
Q Consensus 240 k~qQ~~~I~~~Gp~V 254 (254)
|.||+|||++|||+|
T Consensus 214 k~qq~~fI~k~Gpev 228 (258)
T COG1809 214 KSQQVWFILKIGPEV 228 (258)
T ss_pred cchhhhHHHHhCCcC
Confidence 999999999999997
No 4
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.54 E-value=0.0019 Score=61.17 Aligned_cols=167 Identities=15% Similarity=0.145 Sum_probs=124.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+++++.||. ...+|+-.....-||.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~------~~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI------GTVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc------ccHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677788886 2357776667778999998864 445567999999999999877653 233334445577
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.++|-|.|-.-.+.+++-.++|+.++++ +.+-..+|.- +-.+
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H--------------------------~Hnn 199 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFH--------------------------GHNN 199 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEE--------------------------eCCC
Confidence 888888999999999999999999999999999999873 2112234441 1123
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+......++|||+ +|++. |+=...||..++.+-..+++.|.
T Consensus 200 lGla~ANslaAi~aGa~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 200 LGLGVANSLAAVEAGAT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred cchHHHHHHHHHHhCCC--EEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 44557888888999999 67886 88889999999988777776653
No 5
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.38 E-value=0.0028 Score=60.00 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=124.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+++++.||. ...+|+=.....-||.+-++.. ....+.+++-++.+|+.|..++. .++.+....++.+
T Consensus 77 ~~~~~ll~pg~------~~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~--~l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI------GTVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVG--FLMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc------cCHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEE--EEEcccCCCHHHH
Confidence 44788888886 2346665555667999998864 44556799999999999987664 2233334555678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
-++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +.+-.++|.- +-.+
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H--------------------------~Hnn 198 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFH--------------------------AHHN 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEE--------------------------eCCC
Confidence 888899999999999999999999999999999999873 2211234441 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+-.....++|||++ |++. |+=...||..++.+-..++..|.
T Consensus 199 lGla~ANslaAi~aGa~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~ 245 (333)
T TIGR03217 199 LSLAVANSIAAIEAGATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGW 245 (333)
T ss_pred CchHHHHHHHHHHhCCCE--EEeecccccccccCccHHHHHHHHHhcCC
Confidence 444577888889999998 6775 88889999999998888877653
No 6
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.23 E-value=0.0051 Score=56.40 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=117.6
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHH
Q 025344 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 32 kG~~~~~g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~ 109 (254)
+|+... +-+..++.++.+.+. +|.+-+...++-+ +.+++-++.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 455443 344567777777666 8999998766654 55999999999999876541 11 11112234567888889
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.++|.+.|-+.|-.-.+.+++-.++|+.++++ +.+ .+++- .+. |...-..
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~--~l~~H-~Hn-------------------------d~GlA~a 208 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE-VGL--PIHLH-THD-------------------------TSGLAVA 208 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-CCC--eEEEE-ecC-------------------------CCChHHH
Confidence 999999999999999999999999999999984 111 23331 021 2344477
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.+...++|||++|=.=--|+=+..||..++.+-..+...+.
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~ 249 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGR 249 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCC
Confidence 78888999999754444588888999999988887776654
No 7
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.10 E-value=0.014 Score=52.95 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=119.6
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.-++++..++. ...+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- +.+..-.++.+
T Consensus 75 ~~~~~~~~~~~------~~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI------GTVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc------cCHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34556666664 2346665556667999888765543 3468999999999998776531 22333445578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ ..++.- +-.|
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H--------------------------~Hn~ 195 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFH--------------------------GHNN 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEE--------------------------ecCC
Confidence 888999999999999999999999999999999999884 111 123331 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
...-+..+...++|||++ |++. |+=+..||..++.+-..++..+.
T Consensus 196 ~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g~ 242 (263)
T cd07943 196 LGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMGI 242 (263)
T ss_pred cchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcCC
Confidence 445578888889999996 6776 88888999999988777766553
No 8
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=97.08 E-value=0.0086 Score=53.76 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=67.8
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 161 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~s~v~~ 161 (254)
|.+|+++.++ -.+++.++.++++||++||++-.. ..++.++...+-+.+++.|+++.+-. +.-.+. .+++
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~~ 88 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLGS 88 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCCC
Confidence 6789999765 479999999999999999998543 24477788888888999999875421 110000 1111
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.|+. ......+.+.+.++..-+.|+.+|.+-+.
T Consensus 89 -~~~~------------~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 89 -EDDA------------VRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred -CCHH------------HHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 1110 00112445566677777899999998654
No 9
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.02 E-value=0.0087 Score=54.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=111.6
Q ss_pred HHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHH
Q 025344 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+|+-......+|.+.+...+|-.+.. +.+++-++.++++|..|+.+- |.+-...++.+.++++.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 34333344568999998877765432 346788999999999887553 23333445578888888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
.|.+.|-|.|-+-.+.+++-.++|+.+++. +.+ +++.-+ +. |...-...+-
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~--~l~~H~-Hn-------------------------~~Gla~An~l 201 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TDL--PLEFHA-HN-------------------------DLGLATANTL 201 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHH
Confidence 999999999999999999999999999874 222 244411 21 2334467778
Q ss_pred HHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc-CC
Q 025344 193 RCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL-GL 230 (254)
Q Consensus 193 ~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l-~~ 230 (254)
..+++||++ |++. |+=+..||..++.+-..++.. |.
T Consensus 202 aAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~ 240 (259)
T cd07939 202 AAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHLYGR 240 (259)
T ss_pred HHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHhcCC
Confidence 889999986 5886 777999999999887777655 54
No 10
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=97.02 E-value=0.0089 Score=56.44 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=92.0
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|+.+-||+||..+.+.+.+++.++..+++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999988 2333 244444444443 78999999999999998776662
Q ss_pred -----CChhHHHHHHHHHHHcCCccc-ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAK-PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~-~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.|+.+++.||..+ ..+-. +. | -++.+.+.+.++..++.|++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~--Gl----------------P-------gqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENISIDLIY--DT----------------P-------LDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEEEEeec--CC----------------C-------CCCHHHHHHHHHHHHhcCCC
Confidence 345666788999999998632 22222 11 1 12578889999999999999
Q ss_pred EEEEec
Q 025344 201 MIMIDS 206 (254)
Q Consensus 201 ~ViiEa 206 (254)
.|-+-.
T Consensus 181 ~is~y~ 186 (350)
T PRK08446 181 HLSAYS 186 (350)
T ss_pred EEEecc
Confidence 886543
No 11
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=97.00 E-value=0.0066 Score=57.81 Aligned_cols=121 Identities=17% Similarity=0.368 Sum_probs=89.4
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
..|+-+-||+||..+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133333355665 78999999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. +.-.+ -.+. + -+|.+.+.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dl--i~Gl--P---------------------gqt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSIDL--IYGL--P---------------------TQSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEEe--ecCC--C---------------------CCCHHHHHHHHHHHHccCC
Confidence 3455666788899999986 32222 1111 1 1258889999999999999
Q ss_pred cEEEE
Q 025344 200 DMIMI 204 (254)
Q Consensus 200 ~~Vii 204 (254)
+.|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
No 12
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.97 E-value=0.032 Score=49.43 Aligned_cols=141 Identities=19% Similarity=0.246 Sum_probs=98.4
Q ss_pred HHHHhhcccccEEeecCcccc----cCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 45 DIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 45 DlLe~ag~yID~lKfg~GT~~----l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
+.|..+| ||.+=+|++.+. +++. ..+.++.+++.+ +.+. ++..+ . .+.++.+++.|++.|
T Consensus 26 ~~L~~~G--V~~IEvg~~~~~~~~p~~~~--~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~i 91 (265)
T cd03174 26 EALDEAG--VDSIEVGSGASPKAVPQMED--DWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDEV 91 (265)
T ss_pred HHHHHcC--CCEEEeccCcCccccccCCC--HHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCEE
Confidence 3444555 999999999986 4443 556666666665 4442 11122 1 677889999999999
Q ss_pred EecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-|+...-+. ..+.-.+.|+.+++.|+.+..-+--- . . +..++++
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~--~-~---------------------~~~~~~~ 147 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA--F-G---------------------CKTDPEY 147 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--c-C---------------------CCCCHHH
Confidence 999876631 34556688999999998644322110 0 0 0125889
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.++...++||+.|. ++|..|...++.+.++++.+
T Consensus 148 l~~~~~~~~~~g~~~i~-----l~Dt~G~~~P~~v~~li~~l 184 (265)
T cd03174 148 VLEVAKALEEAGADEIS-----LKDTVGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHcCCCEEE-----echhcCCcCHHHHHHHHHHH
Confidence 99999999999999887 67888888888888887654
No 13
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.94 E-value=0.0047 Score=54.76 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=111.5
Q ss_pred hHHHHHHHhhcccccEEeecCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYV 107 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~-----------~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~--qg~~~~~~yl 107 (254)
..++.+.+. | +|.+-+...++-.+ .-+.+.+-++.++++|+.+.... |.+.. .+++.+.+++
T Consensus 78 ~~i~~a~~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERALEA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVA 152 (265)
T ss_pred hhHHHHHhC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHH
Confidence 344444443 2 78888887766211 12348889999999999776531 22222 5566899999
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+.++|.+.|-+.|-+-.+.+++-.++|+.+++.-=. ..++. |+-.|...-
T Consensus 153 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~--------------------------H~Hn~~gla 204 (265)
T cd03174 153 KALEEAGADEISLKDTVGLATPEEVAELVKALREALPD--VPLGL--------------------------HTHNTLGLA 204 (265)
T ss_pred HHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--CeEEE--------------------------EeCCCCChH
Confidence 99999999999999999999999999999999984211 12332 112234455
Q ss_pred HHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccC
Q 025344 188 IRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+..+-..++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 205 ~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 205 VANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred HHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHHHhcC
Confidence 88888899999977 5886 8889999999999888887665
No 14
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.88 E-value=0.011 Score=54.01 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=120.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~ 103 (254)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 44555556652 24567777777889999999877644 55899999999999987754 111222455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++++.+.+.|.+.|-|.|-+-.+.+++-.++++.++++ +..-..++. |+-.|
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~i~~--------------------------H~Hn~ 193 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN-LDKDIKLGF--------------------------HAHNN 193 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-cCCCceEEE--------------------------EeCCC
Confidence 899999999999999999999999999999999999873 110011222 22224
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
...-+..+...++|||+. |++. |+=...||..++.+-..++.
T Consensus 194 ~Gla~AN~laA~~aGa~~--vd~s~~G~G~~aGN~~~E~~v~~l~~ 237 (266)
T cd07944 194 LQLALANTLEAIELGVEI--IDATVYGMGRGAGNLPTELLLDYLNN 237 (266)
T ss_pred ccHHHHHHHHHHHcCCCE--EEEecccCCCCcCcHHHHHHHHHHHH
Confidence 556688888899999975 6775 88889999999987766654
No 15
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=96.79 E-value=0.015 Score=55.11 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=90.3
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (254)
.-|+-+-||+||..+++.+.|++.++.++++ ++.. . .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4322 1 133332234444 5799999999999999987666
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 126 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
..+.++-.+.++.+++.||. |..-+=. +. + -++.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl--P---------------------gqt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT--P---------------------GESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC--C---------------------CCCHHHHHHHHHHHHhcC
Confidence 24566677889999999987 4333222 11 0 125788899999999999
Q ss_pred CcEEEE
Q 025344 199 ADMIMI 204 (254)
Q Consensus 199 A~~Vii 204 (254)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 988743
No 16
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.71 E-value=0.012 Score=51.77 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=105.9
Q ss_pred hHHHHHHH-hhcccccEEeecCcccccCC-----------hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~~l~~-----------~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..++..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23345677777776665221 2458888999999999887653 2222334457888999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-|.|..-.+++++-.++|+.+++.--. .+++.- .+. |...-+
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H-~Hn-------------------------d~Gla~ 196 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IPLGFH-AHN-------------------------DLGLAV 196 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEE-EBB-------------------------TTS-HH
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--CeEEEE-ecC-------------------------Cccchh
Confidence 9999999999999999999999999999999995332 234442 121 233447
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l 228 (254)
..+...++|||++| ++- |+=+..||...+.+-..++..
T Consensus 197 An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~~ 236 (237)
T PF00682_consen 197 ANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALERM 236 (237)
T ss_dssp HHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhhc
Confidence 78888999999994 665 888999999998887666544
No 17
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.65 E-value=0.063 Score=48.70 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=94.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEee------------cCcccccCChhHHHHHHHHHHhCCceecC---CcH
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDW 91 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKf------------g~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl 91 (254)
..+..-+. +.+..+..+.+...+|.|++=+ |.|++.+.+++.+.+.++..++.+++|+- -++
T Consensus 69 ~vivnv~~---~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRF---VDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEec---CCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 44444443 1456666776667777777665 67778899999999999999988887663 122
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
......++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++. +..+|=+|. . .+ .
T Consensus 146 -------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIgN---G-gI-----------~ 201 (231)
T TIGR00736 146 -------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIGN---N-SI-----------D 201 (231)
T ss_pred -------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEEE---C-Cc-----------C
Confidence 111345788889999999999975443222234 4889998884 111343443 1 11 1
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~ 212 (254)
| .+.+.+.|++||+.||| +|++..+
T Consensus 202 -----------s----~eda~e~l~~GAd~Vmv-gR~~l~~ 226 (231)
T TIGR00736 202 -----------D----IESAKEMLKAGADFVSV-ARAILKG 226 (231)
T ss_pred -----------C----HHHHHHHHHhCCCeEEE-cHhhccC
Confidence 2 56677778899999998 5566544
No 18
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.63 E-value=0.036 Score=50.81 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=97.0
Q ss_pred HHHHHhhcccccEEeecCccc--------ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHc
Q 025344 44 EDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 44 ~DlLe~ag~yID~lKfg~GT~--------~l~~~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~l 113 (254)
-..|..+| ||.+=+|+|++ .-.|.+.+++..+...+..+.... |. +.-+. .+-.+-.++.++.+.+.
T Consensus 27 a~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~-~~p~~~~~~di~~~~~~ 103 (275)
T cd07937 27 AEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYR-HYPDDVVELFVEKAAKN 103 (275)
T ss_pred HHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCcc-CCCcHHHHHHHHHHHHc
Confidence 44667777 99999999874 333434444333332221121110 10 00000 01111378899999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + ..|++.+.+.++.
T Consensus 104 g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------------~~~~~~~~~~~~~ 157 (275)
T cd07937 104 GIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------------VHTLEYYVKLAKE 157 (275)
T ss_pred CCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------------CCCHHHHHHHHHH
Confidence 99999998766554 4556799999999987653 4421110 0 0158899999999
Q ss_pred HHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 194 CLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 194 dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-.++||+.|- +.|..|...++.+.++++.+
T Consensus 158 ~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 158 LEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred HHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 9999999874 68999999999888888654
No 19
>PRK05660 HemN family oxidoreductase; Provisional
Probab=96.51 E-value=0.021 Score=54.49 Aligned_cols=125 Identities=14% Similarity=0.233 Sum_probs=91.0
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
.-|+-+=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -.+.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998751 11112 24444334333 358899999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.|+.+++.||..++ +....+. + + ++.+.+.+.++..++.|.+
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl--p---g------------------qt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL--P---D------------------QSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhcCCC
Confidence 3566777889999999997532 2332221 1 1 2588899999999999999
Q ss_pred EEE
Q 025344 201 MIM 203 (254)
Q Consensus 201 ~Vi 203 (254)
.|-
T Consensus 190 ~is 192 (378)
T PRK05660 190 HLS 192 (378)
T ss_pred eEE
Confidence 884
No 20
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=96.48 E-value=0.026 Score=53.29 Aligned_cols=126 Identities=14% Similarity=0.241 Sum_probs=90.3
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
.-|+.+=||+||..+.+.+.|.+.++..+++- .+.++ .|+.+.-+|+.+ ++.++.++++|++.|.|+--|.+
T Consensus 50 ~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l 126 (360)
T TIGR00539 50 EPLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKL 126 (360)
T ss_pred CcccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHH
Confidence 34889999999999999999999999987641 11122 344443344443 58899999999999999877663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. +-..+ ..+. + -++.+++.+.++..++.|+
T Consensus 127 ~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dl--i~Gl--P---------------------gqt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 127 LFLGRQHSAKNIAPAIETALKSGIENISLDL--MYGL--P---------------------LQTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEEEec--cCCC--C---------------------CCCHHHHHHHHHHHHccCC
Confidence 4667778899999999986 22221 1111 0 1147888999999999999
Q ss_pred cEEEEe
Q 025344 200 DMIMID 205 (254)
Q Consensus 200 ~~ViiE 205 (254)
+.|-+=
T Consensus 182 ~~is~y 187 (360)
T TIGR00539 182 NHLSAY 187 (360)
T ss_pred CEEEee
Confidence 988553
No 21
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.44 E-value=0.23 Score=42.73 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=73.0
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gt-l~E~a~~qg~~~~~~y-l~~~k~lGF 115 (254)
.+.....+.+..++.||++|+|+ +...+.. ++..-++.+.| +..+.-++ ++ ++. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 56677788888899999999963 3343332 32222233333 33333232 22 211 34 677888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHH
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~d 194 (254)
++|=+.--+ +...-.++++.++++|+++..++ +.. ...+.++..
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~~--------------------------------t~~~~~~~~ 122 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINVK--------------------------------DKVKRAKEL 122 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCCC--------------------------------ChHHHHHHH
Confidence 999655322 33455789999999988877653 321 114555556
Q ss_pred HHcCCcEEEEe
Q 025344 195 LEAGADMIMID 205 (254)
Q Consensus 195 LeAGA~~ViiE 205 (254)
++.|+++|.+.
T Consensus 123 ~~~g~d~v~~~ 133 (206)
T TIGR03128 123 KELGADYIGVH 133 (206)
T ss_pred HHcCCCEEEEc
Confidence 77788988875
No 22
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.43 E-value=0.091 Score=46.89 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=81.6
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCC
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPS 161 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~ 161 (254)
|.|+.++.++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-.. .-.+++
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~ 83 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFGS 83 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCCC
Confidence 4566666542 379999999999999999997322 245667788888899999998653 221000 001110
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccc-ccCC-CccH------HHHHHHHhccCCCce
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 233 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~-d~~g-~~r~------d~i~~ii~~l~~~kl 233 (254)
.|+. ......+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 84 -~d~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 84 -RDPA------------TRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred -CCHH------------HHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 1110 00112455566666677889999988432111 1111 1111 222333444454 56
Q ss_pred EEec------CCchhHHHHHHHhC
Q 025344 234 MFEA------TNPRTSEWFIRRYG 251 (254)
Q Consensus 234 ifEA------P~k~qQ~~~I~~~G 251 (254)
.+|. +...+-..|++..+
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~ 173 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEID 173 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcC
Confidence 6766 23345566777665
No 23
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.39 E-value=0.05 Score=51.75 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=92.9
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (254)
..++-+=||+||..+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588999999999999999999999999997 2 223 245554555554 7999999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 126 -----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
.-+.++-.+.|+.+++.||. +-..+ -.+. | .++.+++.+.++...+.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------P-------gqt~e~~~~tl~~~~~l~p 184 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------P-------ILKLKDLDEVFNFILKHKI 184 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------C-------CCCHHHHHHHHHHHHhcCC
Confidence 34556777899999999986 22222 1111 1 1247788888998899999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|-+-.
T Consensus 185 ~~is~y~ 191 (353)
T PRK05904 185 NHISFYS 191 (353)
T ss_pred CEEEEEe
Confidence 9886654
No 24
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=96.36 E-value=0.046 Score=49.63 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=110.1
Q ss_pred hHHHHHHHhhc-ccccEEeecCcccccC-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~GT~~l~-----------~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 73 ~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~ 150 (268)
T cd07940 73 KDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVE 150 (268)
T ss_pred hhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHH
Confidence 34444444322 2289988877655442 11447788999999999887542 2222234457788889
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-+.|-+-.+.+++-.++++.+++.==..-..++. |+-.|...-+
T Consensus 151 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~--------------------------H~Hn~~GlA~ 204 (268)
T cd07940 151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISV--------------------------HCHNDLGLAV 204 (268)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEE--------------------------EecCCcchHH
Confidence 99999999999999999999999999999999841000011222 1112345557
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..+...++|||++ |++. |+=+..||..++.+-..++..+
T Consensus 205 An~laAi~aG~~~--iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 205 ANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHhCCCE--EEEEeeccccccccccHHHHHHHHHhcc
Confidence 7888889999996 4775 7778899999998877776554
No 25
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=96.33 E-value=0.03 Score=54.69 Aligned_cols=127 Identities=17% Similarity=0.358 Sum_probs=89.7
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|.-+-||+||..+++.+.|.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111112 12222222323 368999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||+.. -+...++. + + ++.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl--P---g------------------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL--P---K------------------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 455666789999999998621 12222221 1 1 15888899999999999999
Q ss_pred EEEec
Q 025344 202 IMIDS 206 (254)
Q Consensus 202 ViiEa 206 (254)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86654
No 26
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=96.26 E-value=0.065 Score=52.39 Aligned_cols=125 Identities=19% Similarity=0.367 Sum_probs=90.9
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
-|.-+=||+||..++|.+.|++.++.++++ ++ .++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999886 22 111 23322223333 378999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 127 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+.++-.+.|+.+++.||. |-..+ ..+. + + ++.+.+.+.++..++.|.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--i~Gl--P---g------------------qt~e~~~~tl~~~~~l~p 233 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFESINFDL--IYGL--P---H------------------QTVESFRETLDKVIALSP 233 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeE--EEeC--C---C------------------CCHHHHHHHHHHHHhcCC
Confidence 5677778999999999986 22222 1111 0 1 158889999999999999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|-+-+
T Consensus 234 ~~i~~y~ 240 (453)
T PRK13347 234 DRIAVFG 240 (453)
T ss_pred CEEEEec
Confidence 9997764
No 27
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.23 E-value=0.08 Score=50.82 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=112.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 44444443 47888888887776432 34778889999999988765 4555555666888999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+.|.+.|-+.|-.-.+.+.+-.++|+.+++.= .+ .++.- +-.|...-+-.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~--~l~~H--------------------------~Hnd~GlA~AN 205 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DI--PIEVH--------------------------CHNDFGMATAN 205 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CC--eEEEE--------------------------ecCCcCHHHHH
Confidence 999999999999999999999999999998742 22 23331 11234445777
Q ss_pred HHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHh-ccCC
Q 025344 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG-RLGL 230 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~-~l~~ 230 (254)
+...++|||++| ++- |+=+..||...+.+-..+. ..+.
T Consensus 206 ~laAv~aGa~~v--d~tv~GlGeraGNa~lE~vv~~L~~~~g~ 246 (378)
T PRK11858 206 ALAGIEAGAKQV--HTTVNGLGERAGNAALEEVVMALKYLYGI 246 (378)
T ss_pred HHHHHHcCCCEE--EEeeccccccccCccHHHHHHHHHHHhCC
Confidence 888899999975 664 8888999999887766665 3443
No 28
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.21 E-value=0.11 Score=46.76 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=83.6
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 163 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~~~ 163 (254)
|+.++.++ -.+.+-++.++++||++|||+-+. .+.+.+++..+-+.+++.|+++.+ +..... ...+++ .
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLGS-K 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCCC-c
Confidence 44555532 368888999999999999997443 456788888999999999998763 111000 001111 1
Q ss_pred ccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccc-ccC-CCccHH------HHHHHHhccCCCceEE
Q 025344 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 235 (254)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~-d~~-g~~r~d------~i~~ii~~l~~~klif 235 (254)
|+. ......+.+-+.++..-+.||..|.+-+.... ... .+.... .+.++++..|+ +|.+
T Consensus 85 ~~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA------------VRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 111 00112455667777777899999998765332 111 111111 22334445555 5778
Q ss_pred ec---C---CchhHHHHHHHhC
Q 025344 236 EA---T---NPRTSEWFIRRYG 251 (254)
Q Consensus 236 EA---P---~k~qQ~~~I~~~G 251 (254)
|. | ...+-..+|+..|
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~ 173 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLN 173 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcC
Confidence 85 1 2334456677766
No 29
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=96.20 E-value=0.047 Score=52.01 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=109.3
Q ss_pred hcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
...-+|.+-+...+|-++-. +.+++-|+.++++|..++.+ +|.+-...++.+.++++.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888877754322 22558899999999988765 455555566688889999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-+.|-.--+.+.+-.++|+.+++. +.+ .+++-+ +. |...-+-.+...++||
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aG 210 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAG 210 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhC
Confidence 999999999999999999999874 122 233310 21 3344477888889999
Q ss_pred CcEEEEecc--cccccCCCccHHHHHHHH-hccCCC
Q 025344 199 ADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGLE 231 (254)
Q Consensus 199 A~~ViiEar--gi~d~~g~~r~d~i~~ii-~~l~~~ 231 (254)
|++| ++- |+=+..||...+.+-..+ ...|.+
T Consensus 211 a~~v--d~tl~GiGeraGN~~lE~lv~~L~~~~g~~ 244 (365)
T TIGR02660 211 ATHV--NTTVNGLGERAGNAALEEVAMALKRLLGRD 244 (365)
T ss_pred CCEE--EEEeeccccccccCCHHHHHHHHHHhcCCC
Confidence 9964 765 888999999988877666 445543
No 30
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=96.18 E-value=0.033 Score=53.69 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=91.0
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (254)
.-|+-+=||+||..++|.+.|++.++.++++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222222 244433344443 5899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++-.+.++.+++.||..+. +....+. + + +|.+.+.+.++..++.+.+
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl--P---g------------------qt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL--P---H------------------QTLEDWQASLEAAIALNPT 197 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHcCCCC
Confidence 45667778889999999987321 2222221 1 1 2578889999999999999
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 198 ~is~ 201 (400)
T PRK07379 198 HLSC 201 (400)
T ss_pred EEEE
Confidence 8843
No 31
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=96.17 E-value=0.043 Score=53.58 Aligned_cols=127 Identities=18% Similarity=0.329 Sum_probs=90.5
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
-|+.+=||+||..+++.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998861 11222 12222222333 368999999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||..+ -+...++. + + ++.+++.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl--P---g------------------qt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL--P---K------------------QTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 566777899999999998421 12222221 0 1 15788899999999999998
Q ss_pred EEEec
Q 025344 202 IMIDS 206 (254)
Q Consensus 202 ViiEa 206 (254)
|-+-.
T Consensus 235 i~~y~ 239 (453)
T PRK09249 235 LAVFN 239 (453)
T ss_pred EEEcc
Confidence 87654
No 32
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=96.15 E-value=0.062 Score=49.85 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=104.6
Q ss_pred ccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 52 QFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
.-+|.+-+...+|-.+... .+++-|+.++++|..+. .|..++.. -.++.+.++.+.+.++|
T Consensus 91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALG 168 (287)
T ss_pred cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcC
Confidence 3567777777666443221 37789999999999774 23333332 23457888899999999
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHH
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERC 194 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~d 194 (254)
.+.|-|.|-.--+.+.+-.++|+.+++. +.. ..+++- .+. |...-+..+-..
T Consensus 169 ~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~i~~H-~Hn-------------------------~~Gla~AN~laA 220 (287)
T PRK05692 169 CYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA-ERLAGH-FHD-------------------------TYGQALANIYAS 220 (287)
T ss_pred CcEEEeccccCccCHHHHHHHHHHHHHh-CCC-CeEEEE-ecC-------------------------CCCcHHHHHHHH
Confidence 9999999999999999999999999974 210 123331 121 233447778888
Q ss_pred HHcCCcEEEEecc--cccc------cCCCccHHHHHHHHhccCCC
Q 025344 195 LEAGADMIMIDSD--DVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 195 LeAGA~~ViiEar--gi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
++|||++ +++. |+=. ..||.-++.+-..++..|.+
T Consensus 221 ~~aG~~~--id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~ 263 (287)
T PRK05692 221 LEEGITV--FDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIE 263 (287)
T ss_pred HHhCCCE--EEEEccccCCCCCCCCccccccHHHHHHHHHhcCCC
Confidence 9999997 4554 7655 68999999888777776654
No 33
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=96.13 E-value=0.067 Score=51.97 Aligned_cols=127 Identities=11% Similarity=0.218 Sum_probs=89.2
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (254)
|.-+=||+||..+++.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667889999999999999999999998652 122211 133333334343 78999999999999999877762
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 127 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 127 ----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
-+.++-.+.|+.+++.||.++. +....+. + + +|.+.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl--P---~------------------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI--P---G------------------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhCCCCEE
Confidence 2456677899999999987531 2222221 1 1 257888999999999999987
Q ss_pred EEec
Q 025344 203 MIDS 206 (254)
Q Consensus 203 iiEa 206 (254)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6554
No 34
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=96.10 E-value=0.13 Score=47.79 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=99.9
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (254)
+=||.||....|.+.|++.++.++++. +.++.+|=-+.. +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668999999999999999999998753 122222211111 1133456666667799 4688743333
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEE
Q 025344 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (254)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vi 203 (254)
..+.++..+.+++++++|++|...+=+ +. + + ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl--P---g------------------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL--P---G------------------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC--C---C------------------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235677889999999999987764433 21 1 1 1478889999999999999776
Q ss_pred E------ecccccc--cCCCcc-------HHHHHHHHhccCCCceEEe
Q 025344 204 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 236 (254)
Q Consensus 204 i------Eargi~d--~~g~~r-------~d~i~~ii~~l~~~klifE 236 (254)
+ ++-.+++ ..|.+. .+++..++..++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 5 3222222 235443 3456677899999988877
No 35
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.92 E-value=0.12 Score=47.37 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=102.1
Q ss_pred ccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 52 QFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~G-t-l~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.-+|.+.+...+|-.+.. +.+++-++++|++|..|+.+ . |++. ....++.+.++++.+.+.|.+.|
T Consensus 90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i 168 (273)
T cd07941 90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWL 168 (273)
T ss_pred CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEE
Confidence 356777776665543222 24688999999999988774 2 3331 12234467778888899999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-|.|-.-.+.+++-.++++.+++. +. -..++. |+-.|...-...+...++||
T Consensus 169 ~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~l~~--------------------------H~Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 169 VLCDTNGGTLPHEIAEIVKEVRER-LP-GVPLGI--------------------------HAHNDSGLAVANSLAAVEAG 220 (273)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh-CC-CCeeEE--------------------------EecCCCCcHHHHHHHHHHcC
Confidence 999999999999999999999984 11 011333 11123444578888889999
Q ss_pred CcEEEEecc--cccccCCCccHHHHHHHHh
Q 025344 199 ADMIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 199 A~~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
|++ +++. |+=+..||...+.+-..+.
T Consensus 221 a~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 221 ATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCE--EEEeccccccccccccHHHHHHHHH
Confidence 996 6765 8889999999887776664
No 36
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.88 E-value=0.18 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=26.2
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~e 74 (254)
.......+++..++++|++|.|..-..-+..+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ 49 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEE 49 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHH
Confidence 567788899999999999999965544444444443
No 37
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=95.87 E-value=0.086 Score=50.50 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred hHHHHHHHhhcccccEEeecCcccccC--------ChhH---HHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLM--------PKPF---IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~--------~~~~---l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
..++..+++- +|.+-+...+|-.+ +++. +++-|++++++|..+. .|..++. .-.++.+
T Consensus 125 ~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l 199 (347)
T PLN02746 125 KGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKV 199 (347)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHH
Confidence 4555556553 45566665554222 2333 4489999999999773 2332222 2345578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.+.|-|.|-.--+.+.+-.++++.+++. +. ..+++.-+ + .|
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~-H-------------------------nd 251 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHF-H-------------------------DT 251 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE-C-------------------------CC
Confidence 899999999999999999999999999999999999874 22 12344421 2 13
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccc------cCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+-..++|||++|=.=--||=. ..||.-++.+-..++.+|.+
T Consensus 252 ~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~ 305 (347)
T PLN02746 252 YGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVS 305 (347)
T ss_pred CChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 4445788888999999975333347654 68999988887777776643
No 38
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.71 E-value=0.14 Score=48.82 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=103.8
Q ss_pred cccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 53 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
-+|.+-+...+|-++.+ +.+.+-++.++++|..+..+ +|.+....++.+.++++.+.++|.+.|-+.
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 37777777776655321 34668888999999877643 244444555678888888999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
|-.-.+.+++-.++|+.+++. +.+.-+|+- +. |...-+..+...++|||++
T Consensus 162 DT~G~~~P~~v~~li~~l~~~-~~~~l~~H~---Hn-------------------------d~GlA~AN~laA~~aGa~~ 212 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKEN-VKLPISVHC---HN-------------------------DFGLATANSIAGVKAGAEQ 212 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcc-cCceEEEEe---cC-------------------------CCChHHHHHHHHHHCCCCE
Confidence 999999999999999999874 112122222 21 2344477788889999986
Q ss_pred EEEecc--cccccCCCccHHHHHHHHhc-cC
Q 025344 202 IMIDSD--DVCKHADSLRADIIAKVIGR-LG 229 (254)
Q Consensus 202 ViiEar--gi~d~~g~~r~d~i~~ii~~-l~ 229 (254)
|++- |+=+..||...+.+-..+.. .|
T Consensus 213 --vd~s~~GlGeraGN~~lE~vv~~L~~~~g 241 (363)
T TIGR02090 213 --VHVTVNGIGERAGNAALEEVVMALKYLYG 241 (363)
T ss_pred --EEEEeeccccccccccHHHHHHHHHHhhC
Confidence 5664 88899999999877666654 44
No 39
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.69 E-value=0.24 Score=44.78 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
.+.+.++.+.+.|+.+|=|-|+. --+|.+++.+.|+.+++.-=.. ++|-+-.. -|..
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiAR-------TDa~---- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIAR-------TDAL---- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEE-------cCch----
Confidence 34455677777999999996655 4679999999999888741111 34444211 1110
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
.. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..
T Consensus 153 ~~-------~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~ 207 (243)
T cd00377 153 LA-------GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGG 207 (243)
T ss_pred hc-------cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCC
Confidence 00 01258999999999999999999999752 558888888887755555556654
No 40
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.67 E-value=0.44 Score=43.59 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=98.5
Q ss_pred HHHHHHHhhcccccEEeecCcccc---------cCChhHHHHHHHHHH-hCCceecCCcHHHHHHHhCCchHHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAH-QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~---------l~~~~~l~eKi~l~~-~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
.+-..|+.+| ||++=+||.++. ..+.+.+++...+.+ +..+.+. ........+.++.+.
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~a~ 92 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVM---------VDYGNDDIDLLEPAS 92 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEE---------ECCCCCCHHHHHHHh
Confidence 4455677787 999999986553 234566776666653 2222211 111002346788889
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHH
Q 025344 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
+.|++.|-|+...-. -+.-.+.|+.++++|++|. ++..+.. . .+++.+++.+
T Consensus 93 ~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~--~~~~~a~------------------~------~~~~~~~~~~ 144 (266)
T cd07944 93 GSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVF--FNLMAIS------------------G------YSDEELLELL 144 (266)
T ss_pred cCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEE--EEEEeec------------------C------CCHHHHHHHH
Confidence 999999999875543 3445678999999998654 5553211 0 1588999999
Q ss_pred HHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 192 ~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+...++||+.|. +.|..|...+..+.++++.+
T Consensus 145 ~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 145 ELVNEIKPDVFY-----IVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 999999999874 68889999999888888665
No 41
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=95.63 E-value=0.16 Score=47.99 Aligned_cols=124 Identities=14% Similarity=0.228 Sum_probs=86.1
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE----- 126 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti~----- 126 (254)
.++.+=||+||..+.+.+.+++..+..+++++. ++. |+.+.-+|+ --++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~~--eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--EDL--EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CCC--EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 478899999999999999899888888765542 221 333222232 3468999999999999988766552
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 127 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 127 -----i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
-+.++-.+.|+.+++.||..++ +....+. + + ++.+++.+.++..++.|.+.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl--P---g------------------qt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL--P---N------------------QTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC--C---C------------------CCHHHHHHHHHHHHhcCCCE
Confidence 3456677889999999986221 2222221 0 1 25788899999999999988
Q ss_pred EEE
Q 025344 202 IMI 204 (254)
Q Consensus 202 Vii 204 (254)
|-+
T Consensus 183 is~ 185 (374)
T PRK05799 183 ISC 185 (374)
T ss_pred EEE
Confidence 744
No 42
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.61 E-value=0.18 Score=45.88 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-. |.
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~-----gv--------------- 76 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIA-----GT--------------- 76 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEe-----cc---------------
Confidence 368899999999999999887 776 99999999999999984 111111110 10
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.+++++..-++||+.|++=.-
T Consensus 77 ---~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 77 ---GSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred ---CCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 0114788899999999999999999764
No 43
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.57 E-value=0.15 Score=47.69 Aligned_cols=113 Identities=18% Similarity=0.302 Sum_probs=76.7
Q ss_pred CChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 67 ~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
++.+.|++-|+.+++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 466779999999987421111 2 221 1123 57889999999999999998663 32 589999998877
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCc-cHHHHH
Q 025344 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL-RADIIA 222 (254)
Q Consensus 146 v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~-r~d~i~ 222 (254)
|.+.++- ++.+++..++|||.|+++++ |-+. |.. ..+++.
T Consensus 112 v~~~v~s-----------------------------------~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~ 154 (307)
T TIGR03151 112 VIPVVAS-----------------------------------VALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVP 154 (307)
T ss_pred EEEEcCC-----------------------------------HHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHH
Confidence 7643211 55677888999999999887 2221 222 467777
Q ss_pred HHHhccC
Q 025344 223 KVIGRLG 229 (254)
Q Consensus 223 ~ii~~l~ 229 (254)
++.+.++
T Consensus 155 ~v~~~~~ 161 (307)
T TIGR03151 155 QVVDAVS 161 (307)
T ss_pred HHHHHhC
Confidence 8777654
No 44
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.54 E-value=0.25 Score=43.50 Aligned_cols=146 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-..|..+| ||.+=.|+....--+.+.+++-.+.... ..+. +|.- .+...++.-++.+++.|.+.|.+.
T Consensus 18 ~i~~~L~~~G--v~~iEvg~~~~~~~~~~~v~~~~~~~~~--~~~~--~~~~----~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 18 EIAKALDEAG--VDYIEVGFPFASEDDFEQVRRLREALPN--ARLQ--ALCR----ANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp HHHHHHHHHT--TSEEEEEHCTSSHHHHHHHHHHHHHHHS--SEEE--EEEE----SCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhC--CCEEEEcccccCHHHHHHhhhhhhhhcc--cccc--eeee----ehHHHHHHHHHhhHhccCCEEEec
Confidence 3445566777 8888888555444555556666666666 2221 1111 111235555667789999999998
Q ss_pred CCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
...-++ + .+.-.++|+.+++.|+.| .|+..+.. ..+++.+.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~------------------------~~~~~~~~~ 141 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS------------------------RTDPEELLE 141 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG------------------------GSSHHHHHH
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc------------------------cccHHHHHH
Confidence 655441 1 234457899999999998 55552110 115899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++..++|++.| .|.|..|...++.+.++++.+
T Consensus 142 ~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 142 LAEALAEAGADII-----YLADTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp HHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHHHH
Confidence 9999999999988 467888888888887777543
No 45
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.39 Score=46.06 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=91.9
Q ss_pred hHHHHHHHhhcccccEEeecCc-----ccc-cCChhHHHHHHHHHHhCCceecC-C-cHHHHHHHhCCchHHHHHHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~G-----T~~-l~~~~~l~eKi~l~~~~gV~v~~-G-tl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
+.++++-.......|-+=+|.- ..+ -++.+.|++-|+++|+||+.+|- . +++--.-.. .+.+|++.+.+
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e 90 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVE 90 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHH
Confidence 4566666654455888777743 122 24556699999999999996664 4 543222111 47899999999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
+|-|+|+++| .-+|..+++.|-..--.++.+.. ++ + .+.++
T Consensus 91 ~GvDaviv~D----------pg~i~l~~e~~p~l~ih~S~q~~---------------v~----------N----~~~~~ 131 (347)
T COG0826 91 LGVDAVIVAD----------PGLIMLARERGPDLPIHVSTQAN---------------VT----------N----AETAK 131 (347)
T ss_pred cCCCEEEEcC----------HHHHHHHHHhCCCCcEEEeeeEe---------------cC----------C----HHHHH
Confidence 9999999999 68899999977222112222211 11 1 56677
Q ss_pred HHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 193 ~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
-.-+.||. .+|=+| +++.+.|.+|.++++
T Consensus 132 f~~~~G~~-rvVl~r-------Els~~ei~~i~~~~~ 160 (347)
T COG0826 132 FWKELGAK-RVVLPR-------ELSLEEIKEIKEQTP 160 (347)
T ss_pred HHHHcCCE-EEEeCc-------cCCHHHHHHHHHhCC
Confidence 77888954 455566 567788888887764
No 46
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=95.52 E-value=0.49 Score=44.85 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=88.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
-|+.+=||+||..+.+.+.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 377788899999999989999999999986 321 0 012222222223 36889999999999999987776
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++..+.|+.+++.||.... +....+. + + ++.+++.+.++..++.|.+
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl--P---g------------------qt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL--P---G------------------QTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC--C---C------------------CCHHHHHHHHHHHHccCCC
Confidence 35677888999999999986322 2222121 0 1 2478888889999999999
Q ss_pred EEEEe
Q 025344 201 MIMID 205 (254)
Q Consensus 201 ~ViiE 205 (254)
.|.+-
T Consensus 183 ~i~~y 187 (377)
T PRK08599 183 HYSAY 187 (377)
T ss_pred EEeee
Confidence 87553
No 47
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.51 E-value=0.15 Score=47.12 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~ 108 (254)
.++..+++- +|.+.+...+|-.+.+. .+++-++.++++|..+..+ +|.- .+.-.++.+.++++
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 45566666555443322 2556689999999977764 3221 11335668889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + +...++. |+-.|...-+
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~i~~--------------------------H~Hnd~Gla~ 206 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLHFDF--------------------------HAHNDYDLAV 206 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCeEEE--------------------------EeCCCCCHHH
Confidence 9999999999999999999999999999999873 1 1112333 1112344557
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH-hccCC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI-GRLGL 230 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii-~~l~~ 230 (254)
..+...++|||++ +++. |+=+..||...+.+-..+ .+.|.
T Consensus 207 AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~ 249 (280)
T cd07945 207 ANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVLKDKLKV 249 (280)
T ss_pred HHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHHHHhcCC
Confidence 8888899999995 6665 888999999999887777 44554
No 48
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=95.49 E-value=0.36 Score=45.47 Aligned_cols=109 Identities=12% Similarity=0.208 Sum_probs=77.5
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~---~qg~~~~~~yl~~~k~ 112 (254)
.+.++.+.+..+-+ .+.-+-|..|.....+.+.+.+-++..+++ ++.++.-|-.|+.+ .-| -..++.++.+|+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g-~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSG-LSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 45555555544444 477788888877777888889999999998 46655445556533 222 246899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 025344 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 9999884 222222 26788999999999999998866
No 49
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=95.43 E-value=0.22 Score=45.81 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=106.9
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~ 103 (254)
+.++..+++- +|.+-+...+|-.+.. +.+.+.++.++++|..+. .|..++--. .++.+
T Consensus 77 ~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~ 151 (274)
T cd07938 77 RGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERV 151 (274)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHH
Confidence 4555555543 6777777666643221 446677999999999873 222222111 23467
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.+++. +. ..+++.- +-.|
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~~i~~H--------------------------~Hnd 203 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER-FP-DEKLALH--------------------------FHDT 203 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-CC-CCeEEEE--------------------------ECCC
Confidence 788889999999999999999999999999999999985 21 1233331 1113
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc--ccc------ccCCCccHHHHHHHHhccCCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD--DVC------KHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar--gi~------d~~g~~r~d~i~~ii~~l~~~ 231 (254)
...-+..+...++|||++ +++- |+= +..||..++.+-..++..+.+
T Consensus 204 ~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~ 257 (274)
T cd07938 204 RGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIE 257 (274)
T ss_pred CChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCC
Confidence 444578888899999985 6664 553 578999999887777766543
No 50
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=95.36 E-value=0.89 Score=41.53 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=89.0
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
....+..+++.+.++ +..+.|.+|-..+.+. +.+.++.++++|+ . +.+ |+++ +++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRKD--LIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECcccccccC--HHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHC
Confidence 556788888766554 7889999999877765 7789999999976 3 344 5543 3456667889
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
|++.|-||=-+.+ -+.+.-++.|+.+++.|+. ++-.+-+-.+ .
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g--------~------------------ 161 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKG--------I------------------ 161 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCC--------C------------------
Confidence 9999999876652 2456677889999999986 4443333110 0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|++.-.+|--
T Consensus 162 n~~ei~~~~~~~~~~g~~~~~ie~~ 186 (302)
T TIGR02668 162 NDNEIPDMVEFAAEGGAILQLIELM 186 (302)
T ss_pred CHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 2344455555555689988777754
No 51
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=95.32 E-value=0.11 Score=49.64 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=85.0
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 125 (254)
-|+-+=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ ++++.+++.||+.|.|---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 5889999999999999999999999998831 1111 13554444555554 899999999999988765554
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
.-+.++-.+.++.+++.+..|-..+ .++. + + ++.+.+.+.++..++.+.+.
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl--P---g------------------qt~~~~~~~l~~~~~l~p~~ 186 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR--P---G------------------QTLAAWRAELKEALSLAADH 186 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC--C---C------------------CCHHHHHHHHHHHHhcCCCe
Confidence 2244555677888888744332222 1111 1 1 14777888899999999997
Q ss_pred EEE
Q 025344 202 IMI 204 (254)
Q Consensus 202 Vii 204 (254)
|-+
T Consensus 187 is~ 189 (380)
T PRK09057 187 LSL 189 (380)
T ss_pred EEe
Confidence 644
No 52
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.30 E-value=0.43 Score=43.56 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=82.6
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+++++..|-|+|=+.... ++.++..++++.+++.|+.++.|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 788999999999998877 46788999999999999988887765
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~-klifEAP~-k~qQ~~~I~~~Gp~ 253 (254)
.+++++.+++||++|-+-.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad 235 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGAD 235 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCC
Confidence 334466779999999988775422 234477788888877643 67888875 46667677777765
No 53
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.30 E-value=0.15 Score=46.63 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred hHHHHHHHhhcccccEEeecCccccc-----------CChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSL-----------MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l-----------~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..++-.+++ =+|.+-+...+|-. ..-+.+++-++.++++|+.|+.+- |.+..-.++.+.++++.
T Consensus 75 ~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 75 DDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHH
Confidence 455555554 45566665544421 112235666799999998777542 23333334578899999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .+++.-+ +. |...-+.
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~-Hn-------------------------~~Gla~a 200 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHG-HN-------------------------DTGCAIA 200 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHH
Confidence 999999999999999999999999999999884 22 2344421 21 2333477
Q ss_pred HHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 190 RAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
.+...++|||++ +++. |+=+..||.-.+.+-..+..
T Consensus 201 n~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~~ 238 (262)
T cd07948 201 NAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMYT 238 (262)
T ss_pred HHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHHh
Confidence 788889999995 7776 99999999998887776643
No 54
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=95.26 E-value=0.25 Score=49.28 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=91.8
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCch-HHHHHHHHHHcCCCEEEecCCccc---
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPSA-FKEYVEDCKQVGFDTIELNVGSLE--- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~q-g~~~-~~~yl~~~k~lGF~~IEISdGti~--- 126 (254)
.-|+.+=||+||..+.+.+.|.+.++.++++-..+. ..-|+.+.- .|+. -++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999987521111 111333322 1222 468899999999999999877764
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 127 -------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 127 -------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
-+.++-.+.++.+++.||. +-..+=. +. + -++.+++.+.++..++.+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~--GL--P---------------------gEt~ed~~~tl~~l~~L~ 349 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII--GL--P---------------------GEGLEEVKHTLEEIEKLN 349 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe--CC--C---------------------CCCHHHHHHHHHHHHhcC
Confidence 6778888999999999994 3332222 21 1 114788899999999999
Q ss_pred CcEEEEec
Q 025344 199 ADMIMIDS 206 (254)
Q Consensus 199 A~~ViiEa 206 (254)
.+.|-+=.
T Consensus 350 pd~isv~~ 357 (488)
T PRK08207 350 PESLTVHT 357 (488)
T ss_pred cCEEEEEe
Confidence 99876654
No 55
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.22 E-value=0.4 Score=43.19 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=81.5
Q ss_pred hhHHHHHHHhhcccccEE------------eecCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHH
Q 025344 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFK 104 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~l------------Kfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~ 104 (254)
+..+....+...+|.|++ |-|.|+..+.+++.+.+.++-.++.+++|+. .+|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 445555554444555555 4467888888899999999999998887764 2332 1 456
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++.+.+.+.|.++|-++.+.-. +..+ .++|+.++ .. +|=++. . .+ . |
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad-~~~I~~i~-~~---ipVIgn---G-gI-----------~-----------s- 202 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHAD-LKKIRDIS-TE---LFIIGN---N-SV-----------T-----------T- 202 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCc-HHHHHHhc-CC---CEEEEE---C-Cc-----------C-----------C-
Confidence 7778889999999999876543 2223 36677765 21 232333 1 11 1 2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDD 208 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEarg 208 (254)
.+.+++.|+.|||.||| ||+
T Consensus 203 ---~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 203 ---IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred ---HHHHHHHHHcCCCEEEE-cCC
Confidence 56777778889999998 554
No 56
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.21 E-value=0.17 Score=50.04 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=107.6
Q ss_pred HHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~--~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
..+..++.| ..-||.+-+....+-+. .+++-|+.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~---n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR---NLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH---HHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 345555554 44599999888766653 48999999999996532 12 1111 133346777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|=|.|-.--+.+.+=.++|+.+++. +.+ .++.- .+. |...-+..+-..++|
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~-~~~--pi~~H-~Hn-------------------------t~GlA~AN~laAiea 221 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA-VTV--PLEVH-THA-------------------------TSGIAEMTYLKAIEA 221 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh-cCC--eEEEE-ecC-------------------------CCCcHHHHHHHHHHc
Confidence 9999999999999999999999984 221 23331 021 233347778888999
Q ss_pred CCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 198 GA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
||+.|=.=-.|+-...||..++.+-..++..+.+
T Consensus 222 Gad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 222 GADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 9996433334777789999988877777666643
No 57
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.12 E-value=0.74 Score=43.71 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=93.8
Q ss_pred HHHHHHHhhcccccEEeecC-----------cccccCChhHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSG-----------GSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-----------GT~~l~~~~~l~eKi~l~~~~gV~--v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
.+-..|+.+| ||.+=+|. |.+...+.+.+++-.+..+..-+- .-|| .+ .. +-++
T Consensus 28 ~ia~~Ld~aG--V~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg--------~~--~~-~dl~ 94 (333)
T TIGR03217 28 AIAAALDEAG--VDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG--------IG--TV-HDLK 94 (333)
T ss_pred HHHHHHHHcC--CCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC--------cc--CH-HHHH
Confidence 3444566666 77777753 234444555566555554432221 1133 11 33 4578
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|+.|. +...... . .+++.++
T Consensus 95 ~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~--------------~----------~~~e~l~ 146 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH--------------M----------TPPEKLA 146 (333)
T ss_pred HHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc--------------C----------CCHHHHH
Confidence 89999999999987655543 35689999999998754 2332110 1 1589999
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 147 ~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 147 EQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 99999999999976 478999999999998888654
No 58
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=95.10 E-value=0.27 Score=47.45 Aligned_cols=125 Identities=14% Similarity=0.300 Sum_probs=87.5
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (254)
..|+-+=||+||-.+.+.+.|++.++.++++. .+.+. .|+.+.-+|+.+ .++++.++++|++.|.|.-=|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 46999999999999999999999999999863 11111 244444466666 79999999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 127 ------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 127 ------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-+.++-.+.++.+++.+..+-. -..++. + -++.+.+.+.++..++.+.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~~v~~--DlI~Gl--P---------------------gqt~e~~~~~l~~~~~l~p~ 192 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFPRVSF--DLIYAR--S---------------------GQTLKDWQEELKQAMQLATS 192 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCcEEE--EeecCC--C---------------------CCCHHHHHHHHHHHHhcCCC
Confidence 2455666778888775222211 112121 1 12578889999999999998
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 193 his~ 196 (390)
T PRK06582 193 HISL 196 (390)
T ss_pred EEEE
Confidence 7644
No 59
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.03 E-value=0.45 Score=43.65 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred HHHHHHhhcccccEEeecCcc--------cccCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHH
Q 025344 43 LEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT--------~~l~~~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
.-+.++.++.|.|++=+-.|| +.....+.+.+.++-.++. ++++.- .. +.+.+.++.+.+.
T Consensus 108 ~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~ 179 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAE 179 (300)
T ss_pred HHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHH
Confidence 344444454668888776664 4556777889999988875 665553 21 1124667888899
Q ss_pred HcCCCEEEecCCcc
Q 025344 112 QVGFDTIELNVGSL 125 (254)
Q Consensus 112 ~lGF~~IEISdGti 125 (254)
+.|.|.|.|++++-
T Consensus 180 ~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 180 EAGADGLTLINTLR 193 (300)
T ss_pred HcCCCEEEEEccCC
Confidence 99999999997653
No 60
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.03 E-value=0.73 Score=40.40 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++++.|++.|-+.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~------------------------------ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS------------------------------ 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC------------------------------
Confidence 46789999999999988654443332 566789999999 6666554221
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccc---CCCccHHHHHHHHhccCCCceEEecCCc-hhHHHHHHHhCC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKH---ADSLRADIIAKVIGRLGLEKTMFEATNP-RTSEWFIRRYGP 252 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~---~g~~r~d~i~~ii~~l~~~klifEAP~k-~qQ~~~I~~~Gp 252 (254)
+ .+++++..++|+++|.+..+|.... ......+.+.++.+.++ -.++-+---+ ..+..-+...|.
T Consensus 128 -t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia~GGI~t~~~~~~~l~~Ga 196 (221)
T PRK01130 128 -T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIAEGRINTPEQAKKALELGA 196 (221)
T ss_pred -C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEEECCCCCHHHHHHHHHCCC
Confidence 1 3345678899999999887766432 12234567777766553 2244443332 233333334443
No 61
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=95.02 E-value=0.34 Score=45.30 Aligned_cols=130 Identities=18% Similarity=0.308 Sum_probs=89.1
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++..+++.+.+ -+..+.|.+|.-.+.+. +.+.++.+++++ + .+.+ |+++ .++++.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~d--l~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRG--CDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCcccc--HHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHH
Confidence 55677777765443 37889999999877765 888999888875 2 3344 5443 345677889
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|++.|-||=-+++ -+.+.-.+.|+.+++.|+ .++-.+-+-.+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g-------------------------- 166 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG-------------------------- 166 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------
Confidence 99999999987763 234567788889999988 45443322100
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+.+++.+.++-..+.|+++..+|--
T Consensus 167 ~N~~ei~~~~~~~~~~gi~~~~ie~m 192 (329)
T PRK13361 167 QNDDEVLDLVEFCRERGLDIAFIEEM 192 (329)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEecc
Confidence 02455666666667789999999864
No 62
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.89 E-value=0.46 Score=42.94 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.- ...+-+-.+ +
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v------------------- 73 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---V------------------- 73 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---c-------------------
Confidence 68899999999999999665433 4899999999999998841 111111100 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.+++++..-++||+.|++=.-
T Consensus 74 -~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 74 -GANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred -CCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 0114778899999999999999999764
No 63
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=94.84 E-value=0.69 Score=43.26 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=80.6
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+....+.++..|. =.+-|.+|=-.+.|. +.+.++.+++.|+ .+.| |++++- .+ +..+..|..
T Consensus 61 ~ee~~~~i~e~g~--~~V~i~GGEPLL~pd--l~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~~ 125 (318)
T TIGR03470 61 VEECLRAVDECGA--PVVSIPGGEPLLHPE--IDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPYL 125 (318)
T ss_pred HHHHHHHHHHcCC--CEEEEeCcccccccc--HHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCCc
Confidence 3444455555553 357778898888775 8999999999986 4556 776542 22 334667888
Q ss_pred EEEec-CCcccCC---------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 117 TIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 117 ~IEIS-dGti~i~---------~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
.|-|| ||.-+.- .+.-.+.|+.++++|+.|...+.+-.. . ++++
T Consensus 126 ~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~-------~-------------------n~~e 179 (318)
T TIGR03470 126 TFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFND-------T-------------------DPEE 179 (318)
T ss_pred EEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCC-------C-------------------CHHH
Confidence 89998 6643221 233457899999999876655544100 0 2555
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 025344 187 LIRRAERCLEAGADMIMID 205 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiE 205 (254)
+.+.++..-+.|++.|.+-
T Consensus 180 i~~~~~~~~~lGv~~i~i~ 198 (318)
T TIGR03470 180 VAEFFDYLTDLGVDGMTIS 198 (318)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 5555565667899888773
No 64
>PRK01060 endonuclease IV; Provisional
Probab=94.83 E-value=0.7 Score=41.38 Aligned_cols=92 Identities=15% Similarity=0.317 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+. -...+ .|++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~~-~d~~-------- 82 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLGN-PNKE-------- 82 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCCC-CCHH--------
Confidence 3788899999999999999754 22 45666777777888899998421 1111110 01111 1111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
....+.+.+.+.++..-+.||..|++-.-
T Consensus 83 ----~r~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 83 ----ILEKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 01123556666666677889999998653
No 65
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.67 E-value=0.74 Score=42.96 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt--------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
.+.+.++++.+.|...|=|-|.+ --+|.+++++-|+.+++. +.-++|-+- .. -|.
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~Ii---AR----TDa-- 161 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMII---AR----VES-- 161 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEEE---Ee----ccc--
Confidence 56677788888999999996643 357999999999999885 112233331 11 111
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
. +. ....++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 --~-----~~---~~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 --L-----IL---GKGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred --c-----cc---cCCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 11 11478999999999999999999994 2234566777776664
No 66
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.65 E-value=2 Score=35.22 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=80.7
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (254)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-||=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588999999999998766888888888874 2222211 1111236788999999999998876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 126 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
.-+.+...+.|+.+++.| +.|.+-+-+ +. ..+ +.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~~------------------~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PGE------------------TEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CCC------------------CHHHHHHHHHHHHHc
Confidence 345688889999999999 444332222 11 011 356667777767788
Q ss_pred CCcEEEE
Q 025344 198 GADMIMI 204 (254)
Q Consensus 198 GA~~Vii 204 (254)
|++.|.+
T Consensus 180 ~~~~i~~ 186 (216)
T smart00729 180 GPDRVSI 186 (216)
T ss_pred CCCeEEe
Confidence 9986554
No 67
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.64 E-value=0.53 Score=43.10 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +..-+-+-. -+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv------------------ 77 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GT------------------ 77 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ec------------------
Confidence 68889999999999999884 665 89999999999999884 111111100 01
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
+..+.++.+++++..-++||+.|++=.--.+...-+---+-..+|++..++.=+++-.|
T Consensus 78 --~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 78 --GSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred --CCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 11247889999999999999999996642221110001122334444445555555555
No 68
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.62 E-value=0.57 Score=47.82 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
..+..++.|.+. ||.+-+....+-+ +-+++-++.+|++|..+... ++ +=...++.+-++.+.+.+.|.+.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT---SPVHTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCE
Confidence 345556655444 9998888655543 45999999999999876643 11 10122346667777788899999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|-|.|-.--+.+.+=.++|+.+++. +.+ .++.- .+. |...-+-..-..++|
T Consensus 166 I~i~Dt~G~~~P~~v~~lv~~lk~~-~~~--pi~~H-~Hn-------------------------t~Gla~An~laAvea 216 (582)
T TIGR01108 166 ICIKDMAGILTPKAAYELVSALKKR-FGL--PVHLH-SHA-------------------------TTGMAEMALLKAIEA 216 (582)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHh-CCC--ceEEE-ecC-------------------------CCCcHHHHHHHHHHh
Confidence 9999999999999999999999874 111 13331 011 233347777888999
Q ss_pred CCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 198 GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 198 GA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
||+.|=.=-.|+=...||...+.+-..++..+.+
T Consensus 217 Ga~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 217 GADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CCCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 9996533334888889999988777766666543
No 69
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=94.53 E-value=1.6 Score=40.57 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=89.7
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHh-CCc---eecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~-~gV---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
.+..+..+++.+.++ |.-+.|.+|-..+.+. +.+.++.+++ .|+ .+.+ |.++ +++++.+++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~~--l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--LVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccCC--HHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHH
Confidence 556777777765444 8889999999888765 8888888777 455 3344 5443 345677899
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.|++.|-||=-+.+ .+.+.-.+.|+.+++.|+. ++--+-+..+ .
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g---~--------------------- 166 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRG---V--------------------- 166 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCC---C---------------------
Confidence 99999999965542 2457778899999999986 5544333100 0
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|+..-.+|--
T Consensus 167 --n~~ei~~l~~~~~~~gv~~~~ie~m 191 (334)
T TIGR02666 167 --NDDEIVDLAEFAKERGVTLRFIELM 191 (334)
T ss_pred --CHHHHHHHHHHHHhcCCeEEEEecc
Confidence 2455666666667889987777754
No 70
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.50 E-value=1.1 Score=42.84 Aligned_cols=143 Identities=23% Similarity=0.323 Sum_probs=96.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=+||= ..+++ -.+.++.+.+.+.....-+|. + ...+-++.+.+.|++.|.|+
T Consensus 26 ~ia~~L~~~G--v~~IEvG~p---~~~~~-~~e~i~~i~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i~ 91 (363)
T TIGR02090 26 EIARKLDELG--VDVIEAGFP---IASEG-EFEAIKKISQEGLNAEICSLA-----R---ALKKDIDKAIDCGVDSIHTF 91 (363)
T ss_pred HHHHHHHHcC--CCEEEEeCC---CCChH-HHHHHHHHHhcCCCcEEEEEc-----c---cCHHHHHHHHHcCcCEEEEE
Confidence 4556677777 888888763 33333 245555555544422222333 1 12445788899999999997
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+=++ +. +.-.+.|+.+++.|++| +++..+.. ..|++.+++
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~------------------------r~~~~~l~~ 145 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT------------------------RTDIDFLIK 145 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC------------------------CCCHHHHHH
Confidence 765333 33 44457899999999876 45553110 115889999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.++...++||+.|. ++|..|...++.+.++++.+-
T Consensus 146 ~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 146 VFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 99999999998764 688999999999998887654
No 71
>PRK00915 2-isopropylmalate synthase; Validated
Probab=94.46 E-value=0.56 Score=46.98 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=97.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-..|..+| ||.+=+||..+.=.+.+.+++..+.. .+..++. |. .-.+..++.-++..++.|++.|-+.
T Consensus 30 ~ia~~L~~~G--v~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a--~~----r~~~~did~a~~a~~~~~~~~v~i~ 99 (513)
T PRK00915 30 QIAKQLERLG--VDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCG--LA----RAVKKDIDAAAEALKPAEAPRIHTF 99 (513)
T ss_pred HHHHHHHHcC--CCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEE--Ec----cCCHHHHHHHHHHhhcCCCCEEEEE
Confidence 4456677788 99999999654333344444433322 2344432 11 0112257777777778999999998
Q ss_pred CCcccCChhH------------HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEIPEET------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i~~~~------------r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-++-.+. -.+.|+.+++.|++| +|+..+.. - .|++.+++
T Consensus 100 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~--------------r----------~d~~~l~~ 153 (513)
T PRK00915 100 IATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT--------------R----------TDLDFLCR 153 (513)
T ss_pred ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC--------------C----------CCHHHHHH
Confidence 8775443222 247899999999986 45553110 1 15889999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 154 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 154 VVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred HHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 9999999999865 478999999999888888655
No 72
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.44 E-value=1.1 Score=41.27 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=86.2
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-C
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-G 123 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-G 123 (254)
+.+|+|++|+|-+. +.+.+.|++ + -+.|. .+..| |.-|.. .-++++++-|-.-|=+=. |
T Consensus 95 ~~e~vdilqIgs~~--~~n~~LL~~-v---a~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 95 AYDYLDVIQVGARN--MQNFEFLKT-L---SHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERG 159 (250)
T ss_pred HHhcCCEEEECccc--ccCHHHHHH-H---HccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEccc
Confidence 34589999999766 445443332 2 23455 44557 333332 223344566776555555 7
Q ss_pred cccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 124 SLEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 124 ti~i~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
+-.-|...| ++.|...++ .++.|+. +. .+..| . .+.+...++..+.+|
T Consensus 160 ~~~Y~~~~~n~~dl~ai~~lk~~~~lPViv--d~---SHs~G---~-------------------r~~v~~~a~AAvA~G 212 (250)
T PRK13397 160 VRGYDVETRNMLDIMAVPIIQQKTDLPIIV--DV---SHSTG---R-------------------RDLLLPAAKIAKAVG 212 (250)
T ss_pred cCCCCCccccccCHHHHHHHHHHhCCCeEE--CC---CCCCc---c-------------------cchHHHHHHHHHHhC
Confidence 766665544 466677776 3322111 11 11111 1 334567788999999
Q ss_pred CcEEEEecc-----cccccCCCccHHHHHHHHhccCC
Q 025344 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 199 A~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
|+-+|||-- -.+|..-.+..+.++++++++..
T Consensus 213 AdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 213 ANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred CCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 999999983 78999999999999999987753
No 73
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.36 E-value=0.81 Score=46.94 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=120.9
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHH
Q 025344 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLI 96 (254)
Q Consensus 23 ~~GlT~V~----DkG~~~~~g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~ 96 (254)
++-+-|++ =+||... .-+-.+-+++.|.++ ||++-..- +|-+-+.++.-|+.++++|..+.+- .+.- .-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTT-SP 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecC-CC
Confidence 45667777 7787665 555666677765555 99988774 5666677999999999999844321 0100 11
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
.+.++.+.++.+.+.++|.+.|=|.|-.--+.+.+=.++|+.+++. +. -.++.- .+.
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H-~Hn------------------- 206 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLH-SHS------------------- 206 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEE-eCC-------------------
Confidence 2333466677777888999999999999999999999999999984 21 123331 011
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|...-+...-..++|||+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 207 ------t~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 207 ------TSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred ------CCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 2333466777789999996433334887778999988877777766643
No 74
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=94.35 E-value=1.5 Score=41.05 Aligned_cols=128 Identities=26% Similarity=0.400 Sum_probs=84.2
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
....+.++++.+.+. +..+-|++|--.+.|. +.+.++.++++|+.+ .| |+++ -++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARPD--LVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCcccccccc--HHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCC
Confidence 456677777665443 5678899999888775 889999999999854 34 6542 145677788899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+.--+.+. + .+
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~---------~------------------~N 158 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH---------R------------------HN 158 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEec---------c------------------CC
Confidence 999999965542 1 12333567788888887643323221 0 02
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 025344 184 VDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiE 205 (254)
.+++-+.++-..+-|++.+-+.
T Consensus 159 ~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 159 IDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 4455555555567799988664
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.34 E-value=0.58 Score=42.47 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=51.0
Q ss_pred hHHHHHHHhhccc-ccEEeecCcccc-------cCChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~~-------l~~~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.+..+.+-++ +|++=+-++|-. +...+.+.+.++..|+. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4555555555566 788877766543 33456678888888876 443332 2211 11256778888
Q ss_pred HHHcCCCEEEecCCcc
Q 025344 110 CKQVGFDTIELNVGSL 125 (254)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (254)
+.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 9999999999998764
No 76
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.31 E-value=0.73 Score=47.10 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=106.8
Q ss_pred hHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 41 NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 41 ~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+-.+..++.|.+ -||.+.+....+-+ +-+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad 169 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCD 169 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCC
Confidence 345666666554 59999998766655 44899999999999876521 1100 12234566677778889999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
.|=|.|-.--+.+.+-.++|+.+++. +.+ .++.-+ +. |...-+......++
T Consensus 170 ~I~i~Dt~G~~~P~~~~~lv~~lk~~-~~~--pi~~H~-Hn-------------------------t~Gla~An~laAv~ 220 (592)
T PRK09282 170 SICIKDMAGLLTPYAAYELVKALKEE-VDL--PVQLHS-HC-------------------------TSGLAPMTYLKAVE 220 (592)
T ss_pred EEEECCcCCCcCHHHHHHHHHHHHHh-CCC--eEEEEE-cC-------------------------CCCcHHHHHHHHHH
Confidence 99999999999999999999999884 211 233310 11 22334777788899
Q ss_pred cCCcEEEEecc--cccccCCCccHHHHHHHHhccCC
Q 025344 197 AGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 197 AGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
|||+. |++- |+-...||...+.+-..++..+.
T Consensus 221 aGad~--vD~ai~g~g~~agn~~~e~vv~~L~~~g~ 254 (592)
T PRK09282 221 AGVDI--IDTAISPLAFGTSQPPTESMVAALKGTPY 254 (592)
T ss_pred hCCCE--EEeeccccCCCcCCHhHHHHHHHHHhCCC
Confidence 99996 5654 78778898888877666665543
No 77
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=94.15 E-value=0.39 Score=47.04 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=85.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
-|+-+=||+||..+.+.+.|++.++.++++ ++. + -.|+.+.-+|+. =++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 221 1 123322222222 36889999999999997765554
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
.-+.++-.+.|+.+++.||..+. +..-++. + -+|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl--P---------------------gqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL--P---------------------GQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC--C---------------------CCCHHHHHHHHHHHHhcCCC
Confidence 23455666778888888865322 2222221 1 12578889999999999999
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
No 78
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.14 E-value=1.5 Score=45.02 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=106.8
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v-----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
..+..++.|.+. ||.+-+.-..+- -+.++.-|+.++++|..+ |+++- + ...+.+.++.+.+.+.|.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCC
Confidence 455567766554 999888854433 356889999999999853 22321 1 123467778888899999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL 195 (254)
+.|=|.|-.--+.+.+-.++|+.+++. +. ..++.- .+ .|...-+......+
T Consensus 170 d~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~--~pi~~H-~H-------------------------nt~GlA~An~laAi 220 (593)
T PRK14040 170 DSLCIKDMAGLLKPYAAYELVSRIKKR-VD--VPLHLH-CH-------------------------ATTGLSTATLLKAI 220 (593)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHHh-cC--CeEEEE-EC-------------------------CCCchHHHHHHHHH
Confidence 999999999999999999999999984 11 123331 01 12444577788889
Q ss_pred HcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 196 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 196 eAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+|||+.|=.=-.|+=...||...+.+-..++..+
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEGTE 254 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHhcC
Confidence 9999965333348877889999887776666554
No 79
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.14 E-value=1.7 Score=43.49 Aligned_cols=171 Identities=11% Similarity=0.079 Sum_probs=115.0
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--C-cHHHH
Q 025344 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEH 94 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~-----~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--G-tl~E~ 94 (254)
+-+.|++- |..++ |. .-.+-+++.| ..-||++-..- .+-.-+.++.-|+.++++|..+.. + |.--
T Consensus 85 t~lqmLlR-G~n~v-gy~~ypddvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp- 158 (468)
T PRK12581 85 TRLQMLLR-GQNLL-GYRHYADDIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP- 158 (468)
T ss_pred Cceeeeec-ccccc-CccCCcchHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-
Confidence 45555554 53322 22 3344456665 55699988875 566777899999999999987542 1 2200
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
....+.+.++.+.+.++|.+.|=|.|-.--+.+++=.++|+.+++. . ...++.-+ +.
T Consensus 159 --~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~--~~pi~~H~-Hn----------------- 215 (468)
T PRK12581 159 --VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T--NLPLIVHT-HA----------------- 215 (468)
T ss_pred --cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c--CCeEEEEe-CC-----------------
Confidence 1111236667778889999999999999999999999999999873 1 22344411 21
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|...-+...-..++|||+.|=.=-.|+-...||..++.+-..++..+.+
T Consensus 216 --------t~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 216 --------TSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred --------CCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 2334477778889999996433334888888999988877777766543
No 80
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.08 E-value=0.25 Score=45.61 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=47.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee
Q 025344 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
..|.|+-.+ -+..+=+.-+|++|||.||+|-.- ++-+.++|..+++...+.|+.+-|-.
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmC 74 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMC 74 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchh
Confidence 346666554 357777888899999999999653 58899999999999999998876643
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.01 E-value=0.51 Score=48.30 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.++.+++.+.+.|.+.|-|.|..-++ +.-...|+.+++.|+.+..-+.... +. .+
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~--~~~~~ai~~ak~~G~~~~~~i~yt~--~p----~~----------------- 152 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDP--RNLETALKAVRKVGAHAQGTLSYTT--SP----VH----------------- 152 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcH--HHHHHHHHHHHHcCCeEEEEEEEee--CC----cc-----------------
Confidence 68999999999999999999977766 3455789999999997654443321 10 11
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+++.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 153 -~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 153 -TLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred -CHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 478889999999999999764 78999999999998888765
No 82
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=93.99 E-value=1.2 Score=42.03 Aligned_cols=129 Identities=26% Similarity=0.334 Sum_probs=86.6
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
....+.++++.+.++ +-.+-|.+|--.+.|. +.+.++.+++.|+.+ .| |+++ -++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRKD--LEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCchh--HHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcC
Confidence 456677777765443 4567888899888775 889999999999843 45 5542 134556678899
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
++.|.||=-..+ . +.+.-.+.|+.+++.|++|..-+.+. . .+
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~---------~------------------~N 167 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIH---------R------------------HN 167 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEee---------c------------------CC
Confidence 999999965541 1 35566678889999988754333331 0 02
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++.+.++-..+.|++.|.+-.
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLELAN 190 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec
Confidence 55555666666678999887643
No 83
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=93.96 E-value=0.63 Score=46.79 Aligned_cols=170 Identities=13% Similarity=0.076 Sum_probs=113.4
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCC
Q 025344 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTG 89 (254)
Q Consensus 21 PR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~G 89 (254)
++-.++++.+.+++... --..++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..+..+
T Consensus 70 ~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~ 145 (524)
T PRK12344 70 AKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFD 145 (524)
T ss_pred cEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEc
Confidence 44555555555555221 1123333333 3467777877777554332 3457889999999988775
Q ss_pred c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 90 D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 90 t-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
. ++.-+....++.+-++++.+.+.|.+.|-|.|-.--+.+.+-.++|+.++++ +.+ .+++
T Consensus 146 ~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~-~~v--~i~~---------------- 206 (524)
T PRK12344 146 AEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA-PGV--PLGI---------------- 206 (524)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh-cCC--eEEE----------------
Confidence 3 3322334445567778888899999999999999999999999999999885 122 2222
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii 225 (254)
|+-.|...-+-.....++|||+. ||+- |+=+..||...+.+-..+
T Consensus 207 ----------H~HND~GlA~ANslaAi~aGa~~--Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 207 ----------HAHNDSGCAVANSLAAVEAGARQ--VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred ----------EECCCCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHH
Confidence 12223444577788889999996 6775 888889998887765433
No 84
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.96 E-value=0.68 Score=46.11 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=102.5
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
+..-||.+-+....+-+ +.+++-++.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALNDI---RNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCHH---HHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 44469999988766653 45899999999999977621 111 0 122245667777888899999999999999
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 127 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 127 i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+.+=.++|+.+++. +.+ .++.- .+. |...-+-..-..++|||+.|=.=-
T Consensus 179 l~P~~v~~Lv~~lk~~-~~v--pI~~H-~Hn-------------------------t~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 179 LTPKRAYELVKALKKK-FGV--PVEVH-SHC-------------------------TTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred cCHHHHHHHHHHHHHh-cCC--ceEEE-ecC-------------------------CCCcHHHHHHHHHHhCCCEEEeec
Confidence 9999999999999884 221 12221 021 233347777888999999643322
Q ss_pred ccccccCCCccHHHHHHHHhccCC
Q 025344 207 DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 207 rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.|+-...||..++.+-..++..+.
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCC
Confidence 478888899998888777766664
No 85
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.93 E-value=0.55 Score=44.70 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
.|-.-.+.+|-+ |+=....++.+.|++.|+-+++. .-.++.=+++ .......+++.++.|.+.+...|.+
T Consensus 18 ~LaaAVS~AGgL------G~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~---~~~~~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 18 EFAVAVAEGGGL------PFIALALMRGEQVKALLEETAELLGDKPWGVGIL---GFVDTELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred HHHHHHHhCCcc------ccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe---ccCCCcchHHHHHHHHhcCCcEEEE
Confidence 444555556632 33334467788899999998884 3333221220 0011124789999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
+-|. |. . ++++++.|.+|++.++- ++.+++.+++|||
T Consensus 89 ~~G~---P~----~-~~~lk~~Gi~v~~~v~s-----------------------------------~~~A~~a~~~GaD 125 (320)
T cd04743 89 AGGR---PD----Q-ARALEAIGISTYLHVPS-----------------------------------PGLLKQFLENGAR 125 (320)
T ss_pred cCCC---hH----H-HHHHHHCCCEEEEEeCC-----------------------------------HHHHHHHHHcCCC
Confidence 8663 32 2 58899999888754322 6677889999999
Q ss_pred EEEEecc
Q 025344 201 MIMIDSD 207 (254)
Q Consensus 201 ~ViiEar 207 (254)
.||+|+.
T Consensus 126 ~vVaqG~ 132 (320)
T cd04743 126 KFIFEGR 132 (320)
T ss_pred EEEEecC
Confidence 9999997
No 86
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.92 E-value=0.58 Score=46.31 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++++++.+.+.|++.|-|.+..-++. .-...|+.+++.|+.| ++.+-... ++ .
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~--n~~~~v~~ak~~G~~v--~~~i~~t~-------~p---------------~ 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR--NLETAVKATKKAGGHA--QVAISYTT-------SP---------------V 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH--HHHHHHHHHHHcCCeE--EEEEEeec-------CC---------------C
Confidence 578899999999999999999877775 3556899999999876 44442111 01 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1588899999999999999764 67899999999888888665
No 87
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=93.90 E-value=0.91 Score=42.08 Aligned_cols=130 Identities=19% Similarity=0.285 Sum_probs=87.5
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~----gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++.++++.+.++ +.-+.|.+|--.+.+. +.+.++.+++. .|.+.+ |++ ++++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRKD--LEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCccC--HHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHH
Confidence 556777777766555 7889999999877764 88999999887 244455 543 3345677888
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|.+.|-||=-+.+ -+.+...+.|+.+++.|+ .|+-.+-+-.+.
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~------------------------- 171 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGV------------------------- 171 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCC-------------------------
Confidence 99999999955432 345777889999999998 555554331110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+.|+..-.+|=-
T Consensus 172 -n~~ei~~l~~~~~~~gv~v~~ie~~ 196 (331)
T PRK00164 172 -NDDEIPDLLEWAKDRGIQLRFIELM 196 (331)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEee
Confidence 1234444444445679887777743
No 88
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.89 E-value=1.1 Score=41.18 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=50.3
Q ss_pred hHHHHHHHhhccc--ccEEeecC--------cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHH
Q 025344 41 NVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 41 ~~~~DlLe~ag~y--ID~lKfg~--------GT~~l~~~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~ 108 (254)
..+.+..+.+-++ .|++=+-. |.......+.+.+-++-.+++ ++++.- -+. +.+.+.++.+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 67775511 556666778888989888887 665543 111 1124667788
Q ss_pred HHHHcCCCEEEecCCcc
Q 025344 109 DCKQVGFDTIELNVGSL 125 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (254)
.+.+.|.|.|.+++.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 88999999999977554
No 89
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.73 E-value=0.56 Score=42.71 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=64.8
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+-+.|.++|-|=|+. +..+.|+.+++.+|.|....+..... -..++.++.++. ...+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq~-~~~~gg~~~~~~----------~~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQS-VNTSGGDEGQYR----------GDEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchhh-hhccCCceeecc----------CHHHHHHH
Confidence 34445999999999984 45567888999998877766652110 000111111111 02247899
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|++++...+|||+.|.+|+. ..+++.+|.+.++
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~ 191 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALA 191 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCC
Confidence 99999999999999999963 4667777777766
No 90
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.69 E-value=0.58 Score=47.04 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.+++.+.+.|++.|-|.|..-++ +.....|+.+++.|..+...+... .|.
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt--~sp---------------------- 150 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYT--VSP---------------------- 150 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEe--cCC----------------------
Confidence 368899999999999999999999888 556678999999998776655442 111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.-|++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I-----~IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSI-----CIKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-----EeCCCccCCCHHHHHHHHHHH
Confidence 1158999999999999999976 468889999988888888665
No 91
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.68 E-value=1.2 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=100.0
Q ss_pred hHHHHHHHh-hcccccEEeecCcccc-cCCh-----------------hHHHHHHHHHHhCCceecCC--cHHHHHHHhC
Q 025344 41 NVLEDIFES-MGQFVDGLKFSGGSHS-LMPK-----------------PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlLe~-ag~yID~lKfg~GT~~-l~~~-----------------~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg 99 (254)
..+.+++.. --.-.|++=||+=.|= +++- +..-+.++..++.++.+.-+ |++--.+.+|
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 555566554 4556899999986551 2222 22445666667666765555 7777777775
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
++.|++.|++.|++.+=| .+||.++..++...++++|+.+++=+-..
T Consensus 111 ---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPt-------------------------- 157 (265)
T COG0159 111 ---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPT-------------------------- 157 (265)
T ss_pred ---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCC--------------------------
Confidence 999999999999999876 57999999999999999999887743331
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccHHHHHHHHhc
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~i~~ii~~ 227 (254)
+++++++++ .++..-+|-.=++ |++........+ +.+++++
T Consensus 158 ---t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 158 ---TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred ---CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 133344433 5556667777777 777776664444 5555544
No 92
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.61 E-value=0.73 Score=41.73 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. .... .+ . .++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~----~~--------------~------~~~ 140 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMM----SH--------------M------ASP 140 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEe----cc--------------C------CCH
Confidence 56788899999999986543332 3556899999999986433 3311 10 1 158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.+++..++||+.|- +.|..|...++.+.++++.+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 8999999999999999764 78899999999998888654
No 93
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.59 E-value=0.63 Score=44.20 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +...... ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a~------------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMSH------------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEecc------------------------CCCH
Confidence 44788999999999998755544 345789999999998753 3332110 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++++++...++||+.| .|.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999998888655
No 94
>PRK07094 biotin synthase; Provisional
Probab=93.55 E-value=3.1 Score=38.42 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=85.6
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~-~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (254)
-+..+-|..|+...++.+.+.+.++..++ .++.+. +|. .-++.++.+++.|++.|-++--|.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 46778888887666677789999999998 477543 232 346788899999999987755444
Q ss_pred ------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 126 ------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
..+.+++.+.|+.+++.|+.|.+-+=+ +. + + ++.+++.+.++...+.++
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Gl--p---g------------------et~ed~~~~l~~l~~l~~ 209 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGSGFMV--GL--P---G------------------QTLEDLADDILFLKELDL 209 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecceEEE--EC--C---C------------------CCHHHHHHHHHHHHhCCC
Confidence 477899999999999999986654333 11 0 0 146777888888888898
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|.+-.
T Consensus 210 ~~v~~~~ 216 (323)
T PRK07094 210 DMIGIGP 216 (323)
T ss_pred Ceeeeec
Confidence 8776543
No 95
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.54 E-value=0.36 Score=44.65 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|.-|...+|..-.. . ..++.+....+ -...
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq~-~------~~~gg~~i~gr----t~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQS-V------NVLGGYKVQGR----DEEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeeccccee-e------cccCCeeeecC----CHHH
Confidence 33456677899999999998 467788999999999998888884221 1 00011111000 0112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++|++++...+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 67999999999999999999997
No 96
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.52 E-value=1.3 Score=42.23 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=92.6
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
.+-+.|..+| ||.+=+||-++.=.+ .+.++.+++.+ ..+. +| .+ ...+-++.+.+.|.+.|-
T Consensus 27 ~ia~~L~~~G--v~~IEvG~p~~~~~~----~e~i~~i~~~~~~~~i~--~~-----~r---~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 27 AIARALDEAG--VDELEVGIPAMGEEE----RAVIRAIVALGLPARLM--AW-----CR---ARDADIEAAARCGVDAVH 90 (365)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCCHHH----HHHHHHHHHcCCCcEEE--EE-----cC---CCHHHHHHHHcCCcCEEE
Confidence 4556677778 888999976643222 33444444432 2222 11 12 225567888899999999
Q ss_pred ecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 120 LNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 120 ISdGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
|...+-+ .+.++ -.+.|+.+++.|++| +|+-.+. + ..|++.+
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~---------------r~~~~~l 144 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S---------------RADPDFL 144 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C---------------CCCHHHH
Confidence 8876532 22222 337899999999874 3444211 0 1158899
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 145 ~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 145 VELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 999999999999976 479999999999998888665
No 97
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.37 E-value=0.94 Score=41.66 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=75.8
Q ss_pred hHHHHHHHHHH-cCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCCC
Q 025344 102 AFKEYVEDCKQ-VGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 102 ~~~~yl~~~k~-lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~s~v~~~~d~~~~~~~~~~~~ 176 (254)
.++++++++.+ .|.+.|=+.-. +..|+.++|.++++.+.+. ..-+.+ ..-+
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagv----------------- 80 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQV----------------- 80 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecC-----------------
Confidence 68899999999 99999988665 3579999999999998883 221111 0001
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
+..+..+.|++++..-++||+.|++=.--.+...-+---+-..++++..++.=+++-.|.
T Consensus 81 ---g~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~ 140 (293)
T PRK04147 81 ---GSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPA 140 (293)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 012478889999999999999999987543332211112334556666666667777664
No 98
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=93.36 E-value=1.2 Score=42.41 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=101.5
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+.++..+...+..+ |+=+|+.+|=-.|=+. |.+.|+..+++ ++.|++++-|.-.+..+.+.+|+.|.+.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--l~eIi~~l~~~-------~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--LDEIIARLARL-------GIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhcC--HHHHHHHHhhc-------ccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 677888888888888 8899999999777554 99999999998 3445555544345778889999999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
|-||--|++ |. .+.=.+=|+.|.+.||. ||--.-+.-+ + +..+
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~e 168 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDE 168 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHH
Confidence 999988763 22 12334567899999997 7776666321 1 2566
Q ss_pred HHHHHHHHHHcCCcEEEEecc
Q 025344 187 LIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEar 207 (254)
+...++-.-+-|+..=+||=.
T Consensus 169 i~~l~e~~~~~~~~lrfIE~m 189 (322)
T COG2896 169 IEDLLEFAKERGAQLRFIELM 189 (322)
T ss_pred HHHHHHHHhhcCCceEEEEEe
Confidence 777788888899999999976
No 99
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.34 E-value=1.8 Score=37.65 Aligned_cols=96 Identities=15% Similarity=0.270 Sum_probs=62.6
Q ss_pred hhHHHHHHHhhcc-cccEEeec------------CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCch
Q 025344 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSA 102 (254)
Q Consensus 40 ~~~~~DlLe~ag~-yID~lKfg------------~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~ 102 (254)
+..+.+.-+.+-+ ..|.+++- +|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 3445444444444 68999885 5666677778899999988764 223322 234221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (254)
..++++.+.+.|++.|.|+.++... ...-..++++.+++
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~ 180 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE 180 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh
Confidence 7788899999999999999987532 11223466777776
No 100
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.26 E-value=1.3 Score=40.60 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=69.0
Q ss_pred hHHHHHH-HhhcccccEEeecCccc-ccCChhHHHH-----------------HHHHHH--hCCceecCCcHHHHHHHhC
Q 025344 41 NVLEDIF-ESMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 41 ~~~~DlL-e~ag~yID~lKfg~GT~-~l~~~~~l~e-----------------Ki~l~~--~~gV~v~~Gtl~E~a~~qg 99 (254)
..+.+++ ...-.-+|++=+|+=.| .+.+-..+++ .+.-.+ ..++++..=|++...+..|
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 4555533 35455699999998543 2222222322 222222 2344433336677777665
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+++|++.|++.|++.+=|. +||.++..++++.++++|+..++
T Consensus 106 ---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 106 ---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred ---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999999999996 68999999999999999998775
No 101
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.23 E-value=1.4 Score=41.14 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++.+.+.|.+.|=|.-.| ..|+.++|.++++.+.+. +.-.+-+-.+ +
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~---~~grvpvi~G---v------------------- 84 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVET---VAGRVPVFVG---A------------------- 84 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHH---hCCCCCEEEE---e-------------------
Confidence 68899999999999999875443 489999999999988873 1111111100 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEATN 239 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP~ 239 (254)
+..++++.+++++..-++|||.|++=.--.+...-+---+-..+|++.. ++.=+++-.|.
T Consensus 85 -~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 85 -TTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred -ccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 0124788999999999999999999875222221111122334455556 36666666663
No 102
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.20 E-value=0.46 Score=43.69 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
..-.+..++.|.++|-|-|| ++..+.|+.+.+.|..|..++|..-.. .. .++.+.... . -...
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq~-~~------~~gg~~~~g-r---t~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQS-VN------QLGGYKVQG-K---TEEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeecccccccee-ee------ccCCceecc-C---CHHH
Confidence 33456677899999999998 477899999999999999888884221 11 101111000 0 0112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 68999999999999999999997
No 103
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=93.18 E-value=0.34 Score=46.18 Aligned_cols=179 Identities=19% Similarity=0.223 Sum_probs=96.5
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--------G-tl~E~a~~qg~~----~~~~yl~~~k~lGF~~ 117 (254)
=+|||.+ .-|+-+++..+ =..-|+.||+|||+|.+ + .+++.++.++++ -++..++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iP--p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIP--PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCC--CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 44555444443 24678899999999873 1 256666765211 2788999999999999
Q ss_pred EEecCCcccCChhHHHHHH---HHHHHc------CCccc-----ceeeeecCCCCCCCcccccc----ccccccCCCccc
Q 025344 118 IELNVGSLEIPEETLLRYV---RLVKSA------GLKAK-----PKFAVMFNKSDIPSDRDRAF----GAYVARAPRSTE 179 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI---~~~~~~------G~~v~-----~E~g~k~~~s~v~~~~d~~~----~~~~~~~~~~~~ 179 (254)
+=|+-=+.--+.+++.+++ +.+++. +++|+ ++=|.-..-.+..+ ....+ ...++-+.|...
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~~ 185 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTEE 185 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCcc
Confidence 9887766643444444444 444443 33331 11111000000100 00000 123556777543
Q ss_pred cccCHHHHHHHH---HHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 180 YVEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 180 ~~~d~~~~i~~~---~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.-+...+..+.+ ..||=||.|.. +||.+ ..+++.++..-..+...++.-=|| ||
T Consensus 186 ~l~~s~~~a~~~g~~~~dvy~GiDv~---grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 186 SLERSVQLAEGLGRSPYDVYVGVDVW---GRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred hHHHHHHHHHHcCCCHhHEEEEEEEE---cCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 322222222222 44666777654 78754 456665555555556666666677 66
No 104
>PRK00915 2-isopropylmalate synthase; Validated
Probab=92.94 E-value=0.68 Score=46.37 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=101.4
Q ss_pred ccEEeecCcccccCChh-----------HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
++.+-+...+|-++-+. .+.+-++.++++|..|..+ +|.+..-.++.+-++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 35566666666554322 2468899999999977654 2333344455788888899999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.++++ +.- ...+++ |+-.|...-+..+...++|||+
T Consensus 171 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~--------------------------H~HND~GlAvANslaAv~aGa~ 223 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER-VPNIDKAIISV--------------------------HCHNDLGLAVANSLAAVEAGAR 223 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh-CCCcccceEEE--------------------------EecCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999874 110 012333 2233455568888889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHHh
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
+ |++- |+=+..||...+.+-..+.
T Consensus 224 ~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 224 Q--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 6 5775 8888899999887766654
No 105
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.89 E-value=0.79 Score=42.55 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred HHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 107 VEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
++.+.+.|.+.|-+...+-+. +.+ .-.+.|+.+++.|++|..-+..-+.. + .+
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-~----~~---------- 149 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-P----YE---------- 149 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-C----CC----------
Confidence 477888999999998655332 222 34579999999999876555543221 1 11
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+..|++.+++.+++..++||+.|. |.|..|...+..+.++++.+
T Consensus 150 -----~~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 150 -----GEVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 112589999999999999999764 67888988888888777654
No 106
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.87 E-value=0.84 Score=43.81 Aligned_cols=149 Identities=8% Similarity=0.035 Sum_probs=90.8
Q ss_pred HHHHHHHhhcccccEEeecCcccc-cCCh-hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHS-LMPK-PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~-l~~~-~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.+-+.|..+| ||.+=.|+..+. ..|. ..-++-++.+++ .++. +...+ .+ .+=++.+.+.|.+.|
T Consensus 72 ~ia~~L~~~G--V~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-----~~~l~--~n----~~die~A~~~g~~~v 138 (347)
T PLN02746 72 ELIQRLVSSG--LPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-----FPVLT--PN----LKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHcC--CCEEEECCCcCcccccccccHHHHHHHHHhccCCc-----eeEEc--CC----HHHHHHHHHcCcCEE
Confidence 4456677777 888888865432 1111 001222333332 2221 11111 12 355677888999999
Q ss_pred EecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGt--------i~i~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. + .+. ..|++.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-p----~~~---------------r~~~~~ 198 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-P----IEG---------------PVPPSK 198 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-C----ccC---------------CCCHHH
Confidence 887433 23444443 369999999999884333332221 1 110 116999
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 199 l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 199 VAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 99999999999999874 68899999988888887665
No 107
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.86 E-value=1.1 Score=38.08 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=61.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
.+....++++...++||.+|+|+ ...++.. .+-|+..+++ ++++... ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 56788899999999999999964 2222221 2344445543 5655442 222 2 11234688999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
+.|=+..-+ +.+.-.++++.++++|.++.
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~~ 107 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEVQ 107 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeEE
Confidence 999987654 23455688999999887644
No 108
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.82 E-value=1.3 Score=44.67 Aligned_cols=145 Identities=11% Similarity=0.062 Sum_probs=102.3
Q ss_pred ccEEeecCcccccCChh-----------HHHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~-----------~l~eKi~l~~~~gV~-v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
+|.+-+-..+|-++-+. .+.+-|+.++++|.. +..|. |.+..-+++.+.++++.+.+.|-+.|-+.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35667777777666332 247788899999974 54443 44545555567889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCccc--ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 122 VGSLEIPEETLLRYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~G~~v~--~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
|-.--+.+.+-.++|+.+++. +... ..++. |+--|...-+-.+-..++|||
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~--------------------------H~HND~GlAvANslaAi~aGa 312 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN-TPGIDDIVFSV--------------------------HCHNDLGLATANTIAGICAGA 312 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH-hccccCceeEe--------------------------cccCCcChHHHHHHHHHHhCC
Confidence 999999999999999999873 1000 01121 222244455777888899999
Q ss_pred cEEEEecccccccCCCccHHHHHHHHhc
Q 025344 200 DMIMIDSDDVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 200 ~~ViiEargi~d~~g~~r~d~i~~ii~~ 227 (254)
++|=.=--|+=+..||...+.+-..++.
T Consensus 313 ~~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 313 RQVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred CEEEEeccccccccCCccHHHHHHHHHh
Confidence 9985433488888999998877666654
No 109
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.79 E-value=1.1 Score=41.92 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHH
Q 025344 72 IEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVR 137 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~lI~ 137 (254)
+..--++++..+|++.- .||-+ +..+.+.++...+.|.-.|-|-|.+. -+|.++..+-|+
T Consensus 62 ~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~ 135 (285)
T TIGR02317 62 AEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIA 135 (285)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHH
Confidence 33334456667787775 24543 12455677788899999999999653 368888888888
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCcc
Q 025344 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR 217 (254)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r 217 (254)
.+++.-- -++|-+- ..+ |. + .....++.|+++++..+||||.|.+|+- -.
T Consensus 136 Aa~~a~~--~~d~~Ii---ART----Da-----~--------~~~g~deAI~Ra~ay~~AGAD~vfi~g~--------~~ 185 (285)
T TIGR02317 136 AAVDAKR--DEDFVII---ART----DA-----R--------AVEGLDAAIERAKAYVEAGADMIFPEAL--------TS 185 (285)
T ss_pred HHHHhcc--CCCEEEE---EEc----Cc-----c--------cccCHHHHHHHHHHHHHcCCCEEEeCCC--------CC
Confidence 8877421 1333331 111 11 0 1124889999999999999999999972 13
Q ss_pred HHHHHHHHhccC
Q 025344 218 ADIIAKVIGRLG 229 (254)
Q Consensus 218 ~d~i~~ii~~l~ 229 (254)
.+.++++.++++
T Consensus 186 ~e~i~~~~~~i~ 197 (285)
T TIGR02317 186 LEEFRQFAKAVK 197 (285)
T ss_pred HHHHHHHHHhcC
Confidence 566777777765
No 110
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=92.77 E-value=1.6 Score=41.01 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=59.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.++++..+. .+++.++.+-+.+.+.|-.+-|.-. .++|+++++.|.+|++-++-
T Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G~p~------~~~i~~l~~~gi~v~~~v~s------------------- 145 (330)
T PF03060_consen 92 LELCIEEGV-PFEEQLDVALEAKPDVVSFGFGLPP------PEVIERLHAAGIKVIPQVTS------------------- 145 (330)
T ss_dssp HHHHHHTT--SHHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESS-------------------
T ss_pred HHHHHHhCc-ccccccccccccceEEEEeecccch------HHHHHHHHHcCCccccccCC-------------------
Confidence 445555552 2778888888889999999988643 36789999999888774332
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccc-cCCCccHHHHHHHHhccC
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCK-HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d-~~g~~r~d~i~~ii~~l~ 229 (254)
++.++..+++|||.||+|+- |=.. +.+ --..++.++.+.++
T Consensus 146 ----------------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~~ 190 (330)
T PF03060_consen 146 ----------------VREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAVD 190 (330)
T ss_dssp ----------------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH-S
T ss_pred ----------------HHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhcC
Confidence 77888899999999999985 2111 112 13455566655544
No 111
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.66 E-value=1 Score=40.70 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=90.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
..+-+.|..+| ||.+=+|+-+. .+. =.+.++.+.+. ++.+. ++.+. -.+-++.+.+.|++.|
T Consensus 23 ~~i~~~L~~~G--v~~iE~g~p~~---~~~-~~e~~~~l~~~~~~~~~~-------~~~r~---~~~~v~~a~~~g~~~i 86 (259)
T cd07939 23 LAIARALDEAG--VDEIEVGIPAM---GEE-EREAIRAIVALGLPARLI-------VWCRA---VKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHcC--CCEEEEecCCC---CHH-HHHHHHHHHhcCCCCEEE-------EeccC---CHHHHHHHHhCCcCEE
Confidence 34556677777 88888886442 221 12344444432 22211 11221 1344677889999999
Q ss_pred EecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-++..+-+.. . +.-.+.|+.+++.|+.|. |+..+. . ..+++.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~~~~ 140 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDA---------S---------------RADPDF 140 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccC---------C---------------CCCHHH
Confidence 9976443332 1 334578999999998653 444211 0 115899
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.+++..++|++.| .|+|..|...++.+.+++..+
T Consensus 141 ~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 141 LIEFAEVAQEAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999976 478999999999988888654
No 112
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.63 E-value=4.3 Score=34.83 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.++.+.+.-+++|=+- ...+...+.+-++.++++|+.+.++ ..++....+.++.+.++|.+.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3677676666666433 1224445788899999999987642 0011123344455577899999886
Q ss_pred CCc
Q 025344 122 VGS 124 (254)
Q Consensus 122 dGt 124 (254)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 654
No 113
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=92.60 E-value=1 Score=46.00 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.+++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. +.+-... +| .
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p-~------ 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYTT---------------SP-V------ 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CC-C------
Confidence 58899999999999999999888776 445678999999998754 3331111 11 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999998888765
No 114
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=92.56 E-value=1.5 Score=44.08 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=117.8
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEeecCcccccCChhHHHHHHHHHHhCCcee----c-CCcHHH
Q 025344 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (254)
Q Consensus 24 ~GlT~V~----DkG~~~~~g~~~~~DlLe~ag-~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~-~Gtl~E 93 (254)
.-+.|.. =+||... .-.-.+..++.|. .-||++-+.-..+-+ +.++.-++.++++|-.+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 3466665 3566554 4445566666655 559999998876666 45888999999998844 2 3321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
...++.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +...-.++.
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-~~~~ipI~~--------------------- 205 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-CGEDTRINL--------------------- 205 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-CCCCCeEEE---------------------
Confidence 2344567777788889999999999999999999999999999984 100111232
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCC
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
|+-.|...-+......++|||+.|=.=-.|+=...|+..++.+-..++..+.+
T Consensus 206 -----H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 206 -----HCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred -----EeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCCC
Confidence 11112333477778889999996433334887788998888877777766643
No 115
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=92.43 E-value=3.1 Score=38.30 Aligned_cols=170 Identities=21% Similarity=0.250 Sum_probs=112.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC--C--hhHHHHHHHHHHh-CCceecC--C-cH
Q 025344 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM--P--KPFIEEVVKRAHQ-HDVYVST--G-DW 91 (254)
Q Consensus 20 KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~--~--~~~l~eKi~l~~~-~gV~v~~--G-tl 91 (254)
+-+..|++-+...|. .+..+...++.|..|= .+-.+.|.+... . ++.+.+..+++.+ ..|..-. | .+
T Consensus 25 ~a~~~gv~~~~~~g~----~~~~~~~~~~la~~y~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vvaIGEiGLDy 99 (256)
T COG0084 25 RAREAGVKKMVVVGT----DLEDFKRALELAEKYP-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDY 99 (256)
T ss_pred HHHHcCCcEEEEeec----CHHHHHHHHHHHHhCC-CeEEEEeeCCCccccccHHHHHHHHHHHhcCCCeEEEEecccCc
Confidence 346679999999997 5578888888888886 888899988887 3 5556677777765 3443322 3 21
Q ss_pred -H----HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 025344 92 -A----EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (254)
Q Consensus 92 -~----E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~ 166 (254)
+ +.-.++- .|..+++.+++++...|==+-+ .. ..+++.+++.+. +--|+-...| |
T Consensus 100 ~~~~~~~~~~Q~~--~F~~ql~lA~~~~lPviIH~R~----A~---~d~~~iL~~~~~---~~~gi~HcFs--G------ 159 (256)
T COG0084 100 YWDKEPDKERQEE--VFEAQLELAKELNLPVIIHTRD----AH---EDTLEILKEEGA---PVGGVLHCFS--G------ 159 (256)
T ss_pred cccccccHHHHHH--HHHHHHHHHHHcCCCEEEEccc----cH---HHHHHHHHhcCC---CCCEEEEccC--C------
Confidence 1 3444555 7999999999999877654444 23 345555555443 2224432221 1
Q ss_pred cccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
| +++++++++.| .+|=+=+ -|+.++ ...+.+++..+|+++|+.|...|
T Consensus 160 ----------------s----~e~a~~~~d~G-~yisisG-~itfk~----a~~~~ev~~~iPldrLL~ETDsP 207 (256)
T COG0084 160 ----------------S----AEEARKLLDLG-FYISISG-IVTFKN----AEKLREVARELPLDRLLLETDAP 207 (256)
T ss_pred ----------------C----HHHHHHHHHcC-eEEEECc-eeecCC----cHHHHHHHHhCCHhHeEeccCCC
Confidence 1 88999999999 4443322 233333 34578899999999999997543
No 116
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.86 Score=40.14 Aligned_cols=91 Identities=22% Similarity=0.309 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
..+++.++.|+++||+.||++. +....+.++..++.+.++++|+++..--...+.. . ..+.. .
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~--~--~~~~~------------~ 78 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNL--L--SPDEE------------E 78 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCc--C--CCchh------------h
Confidence 4789999999999999999998 4444444458888899999999876644443210 1 01110 0
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 180 YVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.....+.+.+.++-.-+.||.+|++..-
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~vv~~~g 106 (274)
T COG1082 79 REEALEELKRAIELAKELGAKVVVVHPG 106 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 0112455555666677789998887763
No 117
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.33 E-value=2.7 Score=38.31 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.++++++++-+-|.+.+=+.-. +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 00111111220
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+.++.|++++..-++||+-|++=.
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEec
Confidence 11488899999999999999999875
No 118
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=92.31 E-value=0.67 Score=41.49 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHh
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~ 226 (254)
.+-++++.+....+++||+.|+| ||.||.++.- ...+.+|.+
T Consensus 184 ~~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~ 225 (230)
T PRK00230 184 AGDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILA 225 (230)
T ss_pred cchHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHH
Confidence 36778888999999999998866 8889888654 334444444
No 119
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.28 E-value=1.3 Score=38.85 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.. ++ .
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v------------------~----------- 131 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DI------------------S----------- 131 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--EC------------------C-----------
Confidence 4779999999999988655555555 36668999999987 44333 11 0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccC---CCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA---DSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~---g~~r~d~i~~ii~~l~ 229 (254)
++ +.+++..++|+++|.++.+|..... .....+.+.++.+.++
T Consensus 132 t~----~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ 177 (219)
T cd04729 132 TL----EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG 177 (219)
T ss_pred CH----HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC
Confidence 23 3356778899999998877654321 2233467777766553
No 120
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=92.26 E-value=4.9 Score=38.58 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=85.5
Q ss_pred chhHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~---v~~-Gtl~E~a~~qg~~~~~~yl~~~k~ 112 (254)
...++..+++.+ ..-+..+.|.+|--.+.+. |.+.++.+++. |+. +.+ |++ +++.++.+++
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~d--l~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~ 157 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKD--IEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKE 157 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhh--HHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHh
Confidence 456666666543 2347889999999877765 88999999986 652 344 544 2334567788
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.|++.|-||=-+++ -+.+..++.|+.+++.|+. |+-.+.+-.+.
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~------------------------- 212 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGF------------------------- 212 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCC-------------------------
Confidence 99999999965541 1236667889999999984 55544441110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+++.+.++-..+-|+..-.+|=-
T Consensus 213 -N~~Ei~~li~~a~~~gi~vr~ie~m 237 (373)
T PLN02951 213 -NDDEICDFVELTRDKPINVRFIEFM 237 (373)
T ss_pred -CHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 1344555555555688888777764
No 121
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.21 E-value=4.2 Score=38.12 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 133 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~ 133 (254)
+.+..--++++.-+|+|.- .||-+.. .+.+-++...+.|.-.|-|-|++. -+|.++-.
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444444566677787774 2343222 344556667799999999988752 25777777
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 134 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 134 ~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
+-|+.+++. +--++|-+- ..+ |. .|. ....++.|++++...+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I~---ART----Da---------~~~---~~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVVI---ARV----EA---------LIA---GLGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEEE---EEe----cc---------ccc---cCCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 778877775 122334441 111 11 111 113689999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC--CceEEec
Q 025344 214 DSLRADIIAKVIGRLGL--EKTMFEA 237 (254)
Q Consensus 214 g~~r~d~i~~ii~~l~~--~klifEA 237 (254)
....+.+.++.++++. .-++.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 3458889999988873 3335554
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.20 E-value=4.4 Score=36.45 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=63.2
Q ss_pred hHHHHHHHhhc-ccccEEeecCcc-cccCChhHHHH-----------------HHHHHHhC-CceecCCcHHHHHHHhCC
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQH-DVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~GT-~~l~~~~~l~e-----------------Ki~l~~~~-gV~v~~Gtl~E~a~~qg~ 100 (254)
..+.+++...- .-+|++=+|+=. -.+++-..++. .++..+++ ++++..=+.+...+..
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~-- 91 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY-- 91 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh--
Confidence 44444444333 349999999421 12444444443 33333432 3433211333444444
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.++.|++.|++.|++.|=+-| +|.++..++++.++++|+++..
T Consensus 92 -G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 -GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred -CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 389999999999999998864 5678888999999999888655
No 123
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.19 E-value=2.3 Score=38.89 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.++++++-+.|.+.|=+. || ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv---------------------- 74 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT---------------------- 74 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC----------------------
Confidence 67888999999999999873 33 689999999999998884 1 1111 122
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..+.++.+++++..-++|||.|++=.
T Consensus 75 -----~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 75 -----GSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred -----CCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011478889999999999999999975
No 124
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.05 E-value=3.2 Score=38.08 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~l-GF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ ++
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v~----------------- 78 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---VG----------------- 78 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---cC-----------------
Confidence 678888899888 99998776543 689999999999988873 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP 238 (254)
..+..+.++.++..-++||+.|++=.--.+..+-+---+-...|++.+ ++.=+++-.|
T Consensus 79 ---~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 79 ---SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 114788899999999999999997554222211111122234445555 4555555555
No 125
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.04 E-value=2.9 Score=38.42 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999765433 589999999999998883 0 1111 111
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 229 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~ 229 (254)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+..+++.++.++.+
T Consensus 77 ----~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 77 ----GY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred ----CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 01 3677899999999999999998542 2466555 466777777764343
Q ss_pred CCceEE--e-cCCchhHHHHHHHhC
Q 025344 230 LEKTMF--E-ATNPRTSEWFIRRYG 251 (254)
Q Consensus 230 ~~klif--E-AP~k~qQ~~~I~~~G 251 (254)
+|+. + ..+-.+...+++.++
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~ 174 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLG 174 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcC
Confidence 2222 2 234444445555544
No 126
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.97 E-value=0.65 Score=41.36 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCC--CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK--SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~--s~v~~~~d~~~~~~~~~~ 174 (254)
.+.+-++.++++||++||+..+.. +++..+..++-+.++++|+++.+ ++.-... ..... .|+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~-~~~~-------- 83 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMML-GDEH-------- 83 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccC-CCHH--------
Confidence 689999999999999999965421 34455677788889999998754 2210000 00000 0100
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
......+.+.+.++.+-..||..|++-+
T Consensus 84 ----~r~~~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 84 ----MRRESLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 0011255666777788888999998855
No 127
>PRK09989 hypothetical protein; Provisional
Probab=91.97 E-value=1.3 Score=39.45 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEEE
Confidence 799999999999999999964 23333 34667778899998663
No 128
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.91 E-value=1.5 Score=40.71 Aligned_cols=91 Identities=21% Similarity=0.349 Sum_probs=63.3
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 92 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.|.++..- .+.+++.|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-..... + +.+.
T Consensus 91 ~e~a~~na-------~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~----~---ggy~ 150 (263)
T TIGR00222 91 PEQALKNA-------ARVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVNI----L---GGYK 150 (263)
T ss_pred HHHHHHHH-------HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEee----c---CCee
Confidence 56655442 36677889999999998 556788999999999999887774221110 0 0011
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
. ...-..+.+++|+++++-.+|||+.|.+|+
T Consensus 151 ~----qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 151 V----QGKDEEAAKKLLEDALALEEAGAQLLVLEC 181 (263)
T ss_pred e----cCCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0 000012367999999999999999999998
No 129
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=91.85 E-value=2.1 Score=43.18 Aligned_cols=153 Identities=14% Similarity=0.214 Sum_probs=93.0
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEe
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEI 120 (254)
.+-+.|..+| ||.+=.||..+.-...+.+++..++-- .+..++. |. .+...+- ...+.-++.+.+.|.+.|-|
T Consensus 31 ~ia~~L~~~G--vd~IEvG~p~as~~d~~~~~~i~~~~l-~~~~i~~--~~-~~~~~~i~~~~d~~~e~~~~~g~~~i~i 104 (524)
T PRK12344 31 RIARKLDELG--VDYIEGGWPGSNPKDTEFFKRAKELKL-KHAKLAA--FG-STRRAGVSAEEDPNLQALLDAGTPVVTI 104 (524)
T ss_pred HHHHHHHHcC--CCEEEEcCCcCChhHHHHHHHHHHhCC-CCcEEEE--Ee-eccccCCCcccHHHHHHHHhCCCCEEEE
Confidence 4455677777 899999996544333333333333110 1233322 11 1111110 01245577888999999999
Q ss_pred cCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 121 NVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 121 SdGti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
...+-++-.+ .-.+.|+.+++.|++|. |+-.+ . -|. ...|++.++
T Consensus 105 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~----~---~Da--------------~r~d~~~l~ 161 (524)
T PRK12344 105 FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEH----F---FDG--------------YKANPEYAL 161 (524)
T ss_pred EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Ecccc----c---ccc--------------ccCCHHHHH
Confidence 8765443222 22367888999988753 33310 0 010 012588899
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 162 ~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 162 ATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred HHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 999999999999886 89999999999888888655
No 130
>PLN02321 2-isopropylmalate synthase
Probab=91.81 E-value=1.1 Score=46.28 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 72 IEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 72 l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+++-+++++++|. .+..+ .|.+..-+++.+-++++.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +
T Consensus 212 ~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-------~ 282 (632)
T PLN02321 212 ARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-------T 282 (632)
T ss_pred HHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-------c
Confidence 6677889999986 34443 344444555678889999999999999999999999999999999999873 1
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
..- . ...+.-||--|...-+......++|||+.| |+- |+=+..||...+.+-..+..
T Consensus 283 ~~~---------~---------~v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 283 PGI---------E---------NVIISTHCQNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred CCC---------C---------CceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHHHHHHHh
Confidence 110 0 001122333455666888888999999984 775 77789999998887776654
No 131
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.80 E-value=1.7 Score=44.43 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.+++.+.+.|++.|-|.+..-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 48889999999999999999777665 445678999999998654 4431111 110
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999998888765
No 132
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.77 E-value=2.6 Score=39.04 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. ++-+.+. =+|.
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pv-i~gv----------------- 83 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPV-IAGA----------------- 83 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcE-EEec-----------------
Confidence 67888889999999999774433 589999999999988773 2211110 0000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccCCCc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 232 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~~~k 232 (254)
+. +..+.++.++..-++||+.|++=.- -+|+..| .+..+++.+|.++.+ +
T Consensus 84 -~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~p--n 159 (303)
T PRK03620 84 -GG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCP--N 159 (303)
T ss_pred -CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCC--C
Confidence 01 3678899999999999999998652 2466655 566777777774544 3
Q ss_pred eEE---ecCCchhHHHHHHHhCCC
Q 025344 233 TMF---EATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 233 lif---EAP~k~qQ~~~I~~~Gp~ 253 (254)
++. ..++..+...++++++++
T Consensus 160 i~giK~s~~d~~~~~~~~~~~~~~ 183 (303)
T PRK03620 160 LVGFKDGVGDIELMQRIVRALGDR 183 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCC
Confidence 433 345556666666666554
No 133
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.77 E-value=3.6 Score=37.89 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.+.++.+.+.|++.|=+.-. +..|+.++|.++++.+.+. ..-+.+ + +..
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-------~~g~~p---v-----------i~g----- 80 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVST-------AKGKVP---V-----------YTG----- 80 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHH-------hCCCCc---E-----------EEe-----
Confidence 6888899999999999987433 2689999999999988883 111100 0 000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cccccCC-CccHHHHHHHHhccCCCc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 232 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~i~~ii~~l~~~k 232 (254)
-+ .+..+-+++++..-++||+.|++=.- =+|+..| ++..+++.+|+++.+ +
T Consensus 81 v~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~--n 157 (296)
T TIGR03249 81 VG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCP--N 157 (296)
T ss_pred cC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCC--C
Confidence 00 13778899999999999999998552 1466555 667777887775555 2
Q ss_pred eEE---ecCCchhHHHHHHHhCCC
Q 025344 233 TMF---EATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 233 lif---EAP~k~qQ~~~I~~~Gp~ 253 (254)
|+. ..++-.+...++++++++
T Consensus 158 vvgiKds~~d~~~~~~~~~~~~~~ 181 (296)
T TIGR03249 158 LVGFKDGIGDMEQMIEITQRLGDR 181 (296)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCC
Confidence 222 345666666677766543
No 134
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=91.63 E-value=1.6 Score=44.18 Aligned_cols=135 Identities=22% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHhhcccccEE--eecCcccccCChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-HH
Q 025344 47 FESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FK 104 (254)
Q Consensus 47 Le~ag~yID~l--Kfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~--G-tl~E~a~~---------------qg~~~-~~ 104 (254)
|+..|+.+|=+ =|.+||+.-+|.+.++.-++.++++= -+... + .-+|-+.. -.|+. -+
T Consensus 127 l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~ 206 (522)
T TIGR01211 127 LEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCRE 206 (522)
T ss_pred HHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCH
Confidence 44567777633 38999999999999999999998761 11111 1 00222211 12333 47
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+.++.++++|++.||+--=|. --+.++-.+.++++++.||++...+ ..++ +|
T Consensus 207 e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GL--Pg-------------- 268 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGL--PG-------------- 268 (522)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCC--CC--------------
Confidence 899999999999999866555 2455666788999999999755544 3222 11
Q ss_pred CCccccccCHHHHHHHHHHHHH---cCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLE---AGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLe---AGA~~ViiEa 206 (254)
+|.+..++.++..++ .+.|.|-+-.
T Consensus 269 -------qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 -------SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred -------CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 146677888877774 7899887666
No 135
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.62 E-value=3.4 Score=37.94 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=81.1
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 124 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 124 (254)
.+++|++|+|-++ +.+.+ |.+. +-+.|. .++.|. +-|. ..-++.+++-|-+-|=+-. |+
T Consensus 106 ~~~~d~lkI~s~~--~~n~~-LL~~---~a~~gkPVilk~G~~~t~~e~---------~~Ave~i~~~Gn~~i~l~~rG~ 170 (260)
T TIGR01361 106 AEYADILQIGARN--MQNFE-LLKE---VGKQGKPVLLKRGMGNTIEEW---------LYAAEYILSSGNGNVILCERGI 170 (260)
T ss_pred HhhCCEEEECccc--ccCHH-HHHH---HhcCCCcEEEeCCCCCCHHHH---------HHHHHHHHHcCCCcEEEEECCC
Confidence 3679999999876 44444 3333 334565 445573 3332 2234555666775444422 45
Q ss_pred ccC-C---hhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 125 LEI-P---EETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 125 i~i-~---~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
-+- | .+--++.|..+++. ++. +|.- +....| + .+.....+...+.+||
T Consensus 171 s~y~~~~~~~~dl~~i~~lk~~~~~p----V~~d-s~Hs~G---~-------------------r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 171 RTFEKATRNTLDLSAVPVLKKETHLP----IIVD-PSHAAG---R-------------------RDLVIPLAKAAIAAGA 223 (260)
T ss_pred CCCCCCCcCCcCHHHHHHHHHhhCCC----EEEc-CCCCCC---c-------------------cchHHHHHHHHHHcCC
Confidence 333 2 23445667777763 322 3331 111111 1 2334566778999999
Q ss_pred cEEEEec-----ccccccCCCccHHHHHHHHhcc
Q 025344 200 DMIMIDS-----DDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 200 ~~ViiEa-----rgi~d~~g~~r~d~i~~ii~~l 228 (254)
+-+|||. +...|..-.+..+.+.++++++
T Consensus 224 ~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 224 DGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 9999998 3678999999999999998753
No 136
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=91.62 E-value=1.9 Score=43.01 Aligned_cols=96 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.|++.+.+.|++.|-|.+..-++ +.-.+.|+.+++.|+.|. ..+-.. . +| .
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t---~------------~p-------~ 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI--RNLEKSIEVAKKHGAHVQ--GAISYT---V------------SP-------V 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH--HHHHHHHHHHHHCCCEEE--EEEEec---c------------CC-------C
Confidence 68899999999999999999877765 334568899999998654 333111 1 11 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-+++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I-----~i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSI-----CIKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCccCCcCHHHHHHHHHHH
Confidence 158889999999999999976 468899999998888888655
No 137
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.53 E-value=5.3 Score=36.63 Aligned_cols=143 Identities=13% Similarity=0.190 Sum_probs=92.7
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI 120 (254)
..+-+.|..+| ||.+=+|+..+. |. ..+-++.+.+.+.....-+|. .. -.+.++.+.+.|.+.|-+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~~--~~~~~~~l~~~~~~~~v~~~~-----r~---~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--PQ--SRADCEAIAKLGLKAKILTHI-----RC---HMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--HH--HHHHHHHHHhCCCCCcEEEEe-----cC---CHHHHHHHHHcCcCEEEE
Confidence 35566778888 999999975432 32 455555555444321112332 22 234688888999999998
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
.... ...+.++ -.++|+.+++.|++| .++..+.. -+ +++.+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~--------------r~----------~~~~l~ 144 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF--------------RS----------DLVDLL 144 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC--------------CC----------CHHHHH
Confidence 5432 2333333 456779999999764 44553211 11 377888
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++..++||+.| .+.|..|...++.+.++++.+
T Consensus 145 ~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 145 RVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 89999999999965 468889999999888888655
No 138
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.51 E-value=2.9 Score=38.70 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv----------------------- 76 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT----------------------- 76 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc-CCCceEEecC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 238 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l-~~~klifEAP 238 (254)
+..+..+.|++++..-++||+.|++-.--.+...-+---+-...|++.. ++.=+++-.|
T Consensus 77 ----~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 77 ----GALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred ----CcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 0124788899999999999999999885332221111112233444555 4555556555
No 139
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=91.51 E-value=3.2 Score=38.31 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdG---ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+-+-.+ ++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~----------------- 78 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG----------------- 78 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC-----------------
Confidence 6888999999999 999888754 3579999999999988883 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..+.++-++.++..-++|||.|++=.
T Consensus 79 ---~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ---SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11478889999999999999999944
No 140
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.50 E-value=0.89 Score=42.62 Aligned_cols=117 Identities=24% Similarity=0.405 Sum_probs=82.7
Q ss_pred HHHHHHHHHhCCceec------CCc-HHH-HHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHHc
Q 025344 72 IEEVVKRAHQHDVYVS------TGD-WAE-HLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~------~Gt-l~E-~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (254)
.++-++.++..++.+. ||. +|| +|+.-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++.
T Consensus 113 T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~~ 184 (280)
T COG0157 113 TARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARAA 184 (280)
T ss_pred HHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHHh
Confidence 4567888899997543 574 666 4555441 221 45554 68889998888877 455889999885
Q ss_pred -CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHH
Q 025344 143 -GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 221 (254)
Q Consensus 143 -G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i 221 (254)
+|.++-|+=+. + .+++.+.++||||.||.+ |+..+.+
T Consensus 185 ~~~~~kIEVEve-----------------------------s----le~~~eAl~agaDiImLD---------Nm~~e~~ 222 (280)
T COG0157 185 APFTKKIEVEVE-----------------------------S----LEEAEEALEAGADIIMLD---------NMSPEEL 222 (280)
T ss_pred CCCCceEEEEcC-----------------------------C----HHHHHHHHHcCCCEEEec---------CCCHHHH
Confidence 56665665551 1 778889999999999994 7778888
Q ss_pred HHHHhccC-CCceEEecC
Q 025344 222 AKVIGRLG-LEKTMFEAT 238 (254)
Q Consensus 222 ~~ii~~l~-~~klifEAP 238 (254)
.+.++.++ ..+++-||.
T Consensus 223 ~~av~~l~~~~~~~lEaS 240 (280)
T COG0157 223 KEAVKLLGLAGRALLEAS 240 (280)
T ss_pred HHHHHHhccCCceEEEEe
Confidence 88877666 557788876
No 141
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=91.49 E-value=1.1 Score=44.68 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred ccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++.+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666666666665532 33558889999999876654 3444444556788889999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
-.--+.+.+-.++|+.++++ +.- ...+++ |+-.|...-+..+...++|||+
T Consensus 168 TvG~~~P~~~~~~i~~l~~~-~~~~~~v~l~~--------------------------H~HND~GlAvANalaAv~aGa~ 220 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN-VPNIDKAILSV--------------------------HCHNDLGLAVANSLAAVQNGAR 220 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh-hccccCceEEE--------------------------EeCCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999873 110 011222 3333455568888889999999
Q ss_pred EEEEecc--cccccCCCccHHHHHHHHh
Q 025344 201 MIMIDSD--DVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 201 ~ViiEar--gi~d~~g~~r~d~i~~ii~ 226 (254)
. ||+- |+=+..||...+.+-..+.
T Consensus 221 ~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 221 Q--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred E--EEEEeecccccccCccHHHHHHHHH
Confidence 5 5775 8878899998887766554
No 142
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.37 E-value=1.8 Score=37.74 Aligned_cols=108 Identities=18% Similarity=0.296 Sum_probs=63.4
Q ss_pred HHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCc
Q 025344 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 47 Le~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
+..+| ++.++ ++-.+ +.+.+.+.++..++.- .++..+.++ +.+ ...+++++.|++.|.+.|.++++
T Consensus 22 ~~~~G-~ig~i----~~~~~-~~~~~~~~~~~i~~~~~~~~~v~~i~-----~~~~~~~~~~~~~~~~~g~d~v~l~~~- 89 (236)
T cd04730 22 VSNAG-GLGFI----GAGYL-TPEALRAEIRKIRALTDKPFGVNLLV-----PSSNPDFEALLEVALEEGVPVVSFSFG- 89 (236)
T ss_pred HHhCC-Ccccc----CCCCC-CHHHHHHHHHHHHHhcCCCeEEeEec-----CCCCcCHHHHHHHHHhCCCCEEEEcCC-
Confidence 33344 56665 22223 4455666677666542 211111111 111 26889999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
.+ .++++.+++.++.+.+ + + . + .+++++..++||++|++
T Consensus 90 --~~----~~~~~~~~~~~i~~i~----~-----v------------~----------~----~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 90 --PP----AEVVERLKAAGIKVIP----T-----V------------T----------S----VEEARKAEAAGADALVA 128 (236)
T ss_pred --CC----HHHHHHHHHcCCEEEE----e-----C------------C----------C----HHHHHHHHHcCCCEEEE
Confidence 22 3466667766554322 1 0 0 1 24556667899999999
Q ss_pred ecc
Q 025344 205 DSD 207 (254)
Q Consensus 205 Ear 207 (254)
.+.
T Consensus 129 ~~~ 131 (236)
T cd04730 129 QGA 131 (236)
T ss_pred eCc
Confidence 886
No 143
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.33 E-value=1.5 Score=42.34 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCc
Q 025344 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~G~~ 145 (254)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.|.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 345555566666666554332 3346889999999999999999766554222 1456677777775544
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 146 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 146 v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|+. |. + . + .+.+++.+++|||.|++ ++
T Consensus 190 VIa--G~------V-----------~-----------t----~e~A~~l~~aGAD~V~V-G~ 216 (368)
T PRK08649 190 VIV--GG------C-----------V-----------T----YTTALHLMRTGAAGVLV-GI 216 (368)
T ss_pred EEE--eC------C-----------C-----------C----HHHHHHHHHcCCCEEEE-CC
Confidence 422 11 1 1 1 55677778899999999 66
No 144
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=91.33 E-value=8 Score=32.62 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.4
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG-F~~ 117 (254)
.+..+.++++.+..++..+-|.+|-..+.++ +.+-++.+++.|+.++.= +.| ..+++++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~-------TNg--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLD-------TNG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEE-------eCC--CCHHHHHHHHhcCCCcE
Confidence 5678888888888889999999999888775 899999999999855431 122 1234556666778 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHcCCccc
Q 025344 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~G~~v~ 147 (254)
|-||-... + + .. +.-.+.|+.++++|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 145678888999887644
No 145
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.29 E-value=6 Score=36.51 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=81.0
Q ss_pred hcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCC
Q 025344 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVG 123 (254)
Q Consensus 50 ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdG 123 (254)
+.+++|++|+|-++ +.+.+.|++- -+.|. .+..|+ +-|..-. .+.++.-|-. .+=+--|
T Consensus 107 l~~~vd~~kIga~~--~~n~~LL~~~----a~~gkPV~lk~G~~~s~~e~~~A---------~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 107 VADYADMLQIGSRN--MQNFELLKEV----GKTKKPILLKRGMSATLEEWLYA---------AEYIMSEGNENVVLCERG 171 (266)
T ss_pred HHHhCCEEEECccc--ccCHHHHHHH----hcCCCcEEEeCCCCCCHHHHHHH---------HHHHHhcCCCeEEEEECC
Confidence 34779999999877 4554434433 34555 444573 3332211 2334555553 2223333
Q ss_pred cccC----ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC
Q 025344 124 SLEI----PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 198 (254)
Q Consensus 124 ti~i----~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG 198 (254)
+-+. +..--++.|...++. ++ | +++- +...+| ..+.....+...+.+|
T Consensus 172 ~~t~~~Y~~~~vdl~~i~~lk~~~~~---p-V~~D-~sHs~G----------------------~~~~v~~~~~aAva~G 224 (266)
T PRK13398 172 IRTFETYTRNTLDLAAVAVIKELSHL---P-IIVD-PSHATG----------------------RRELVIPMAKAAIAAG 224 (266)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCC---C-EEEe-CCCccc----------------------chhhHHHHHHHHHHcC
Confidence 3112 333455667777764 32 2 4442 111221 2345677899999999
Q ss_pred CcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 199 ADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 199 A~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
|+-+|||.- -+.|..-.+..+.+.++++.+
T Consensus 225 a~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 225 ADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 999999983 678999999999999998754
No 146
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.23 E-value=2.7 Score=39.03 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFK 104 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-----~~~ 104 (254)
+.++..+++ =+|.+-+-..+|-.+.+ +.+++-+++++++|+.+..+- |-+..-.++ -+.
T Consensus 78 ~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~ 152 (279)
T cd07947 78 EDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVN 152 (279)
T ss_pred HHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHH
Confidence 455555554 34555555555544433 236678889999998655421 323322221 466
Q ss_pred HHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 105 EYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 105 ~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
++++.+.+.|.+ .|=+.|-.--..+ ++=.++++.+++. ++ +-.+++.
T Consensus 153 ~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~-p~~~l~~----------------------- 208 (279)
T cd07947 153 KLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGV-PSENLEW----------------------- 208 (279)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCC-CCceEEE-----------------------
Confidence 667777779999 6888887764444 4455888888763 11 1112333
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhcc-CC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRL-GL 230 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l-~~ 230 (254)
|+-.|...-+..+...++|||++ +++. |+=+..||..++.+-..+..+ |.
T Consensus 209 ---H~Hn~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~ 261 (279)
T cd07947 209 ---HGHNDFYKAVANAVAAWLYGASW--VNCTLLGIGERTGNCPLEAMVIEYAQLKGN 261 (279)
T ss_pred ---EecCCCChHHHHHHHHHHhCCCE--EEEecccccccccchhHHHHHHHHHHhcCC
Confidence 22223455588888899999997 5664 888999999999888777665 53
No 147
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.23 E-value=2.2 Score=42.67 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=105.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.++..+++ | +|.+-+...+|-++-+ +.+.+-++.++++|..|..+ +|.+...+++.+.++++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHH
Confidence 44444443 2 5678888888766422 33566678999999865542 1334344455677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+.|-+.|-+.|-.--+.+.+-.++|+.+++. +.+ .+++ |+-.|...-+-.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~v--~l~~--------------------------H~HND~GlAvAN 203 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL-VKG--PVSI--------------------------HCHNDFGLAVAN 203 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cCC--eEEE--------------------------EecCCccHHHHH
Confidence 99999999999999999999999999998874 222 2333 112234455788
Q ss_pred HHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhc
Q 025344 191 AERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~ 227 (254)
+...++|||+. ||+- |+=+..||...+.+-..+..
T Consensus 204 alaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 204 TLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 88899999996 6775 88889999998877766654
No 148
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.17 E-value=1.2 Score=40.80 Aligned_cols=73 Identities=32% Similarity=0.423 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++. ++ | +.+|..
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~---P-v~vKl~---------------- 162 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV---P-VIVKLT---------------- 162 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC---C-EEEEeC----------------
Confidence 455666677788999999975542 23345556788888875 22 2 444421
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
| +.++..+.++...++||+.|.+
T Consensus 163 -~---------~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 163 -P---------NVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEE
Confidence 1 2345677788888999998876
No 149
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.13 E-value=4.5 Score=36.95 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.7
Q ss_pred hHHHHHHHhhccc-ccEEeecCcc--------cccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT--------~~l~~~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.+..+.+-++ +|++=+-++| +.....+.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 6777664443 3445667788999999888 7766642 11 11246677888
Q ss_pred HHHcCCCEEEecCCcc
Q 025344 110 CKQVGFDTIELNVGSL 125 (254)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (254)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999987543
No 150
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.11 E-value=1.8 Score=38.40 Aligned_cols=102 Identities=20% Similarity=0.097 Sum_probs=62.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec--------------CCc
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGD 90 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~--------------~Gt 90 (254)
++..+.+=|+ . ....++.+++. -+|.+ ..|+..+.+++.+++..+.+++..|.++ +=+
T Consensus 71 ~~pv~~~GGI--~-s~~d~~~~l~~---G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 71 FIPLTVGGGI--R-SLEDARRLLRA---GADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CCCEEEeCCC--C-CHHHHHHHHHc---CCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 3455555554 2 34555666653 25554 5678888888888888787765445433 212
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHH
Q 025344 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKS 141 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~ 141 (254)
|.+. ......++.+.+.+.|++.|.+++=+ ..-. ..++++++++
T Consensus 143 ~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~ 190 (243)
T cd04731 143 GRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSS 190 (243)
T ss_pred Ccee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHh
Confidence 4332 12357788899999999999996522 2222 2466777766
No 151
>PRK10812 putative DNAse; Provisional
Probab=91.04 E-value=7.2 Score=35.66 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=103.7
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC--hhHHHHHHHHHHhCCceecC---C-cHH---
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVST---G-DWA--- 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~--~~~l~eKi~l~~~~gV~v~~---G-tl~--- 92 (254)
+..|+..++.+|. .+...+..++.+..| +.+..+.|-+...- ...+.+..+++....| +.- | .+.
T Consensus 30 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~l~~~~~~~~v-vaIGEiGLD~~~~~ 103 (265)
T PRK10812 30 AARDVKFCLAVAT----TLPGYRHMRDLVGER-DNVVFSCGVHPLNQDEPYDVEELRRLAAEEGV-VAMGETGLDYYYTP 103 (265)
T ss_pred HHcCCCEEEEeCC----CHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCChhHHHHHHHHhcCCCE-EEEEeeecCcCCCC
Confidence 4669999999997 567888888888887 35777888776442 3335554455543333 222 3 222
Q ss_pred -HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 93 -EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 93 -E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
....++. -|...++.++++|...+==+-+.. .++++.+++.+... .-++-... .|
T Consensus 104 ~~~~~Q~~--vf~~ql~lA~e~~~Pv~iH~r~a~-------~~~l~iL~~~~~~~--~~~v~H~f--sG----------- 159 (265)
T PRK10812 104 ETKVRQQE--SFRHHIQIGRELNKPVIVHTRDAR-------ADTLAILREEKVTD--CGGVLHCF--TE----------- 159 (265)
T ss_pred CCHHHHHH--HHHHHHHHHHHhCCCeEEEeeCch-------HHHHHHHHhhcCCC--CCEEEEee--cC-----------
Confidence 1233444 799999999999988875444322 25555555544321 11231111 11
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+- |... .-+.+.+.++++.+|+++|+.|...|
T Consensus 160 -----------~----~~~a~~~~~~G~~is~~---g~~t---~~~~~~~~~~~~~ipldrlLlETD~P 207 (265)
T PRK10812 160 -----------D----RETAGKLLDLGFYISFS---GIVT---FRNAEQLRDAARYVPLDRLLVETDSP 207 (265)
T ss_pred -----------C----HHHHHHHHHCCCEEEEC---eeee---cCccHHHHHHHHhCChhhEEEecCCC
Confidence 1 66788888888766443 2210 12456788899999999999998755
No 152
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=91.03 E-value=2.1 Score=43.10 Aligned_cols=151 Identities=16% Similarity=0.089 Sum_probs=87.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHH-HHHhC-CchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEH-LIRNG-PSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V~v~~Gtl~E~-a~~qg-~~~~~~yl~~~k~lGF~ 116 (254)
.+-+.|..+| ||.+-.||-.+. |. -.+-++.+.+.. ...+.+....+ ++.+- .+.++.-++..++-|.+
T Consensus 110 ~Ia~~L~~~G--Vd~IEvG~Pa~s--~~--e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~ 183 (503)
T PLN03228 110 EIARQLAKLR--VDIMEVGFPGSS--EE--EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKRP 183 (503)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCC--HH--HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCCC
Confidence 4566777777 888888883322 22 233333333321 11111211111 22221 00133333323344778
Q ss_pred EEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGti~i~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-|.-.+-++-.+.+ .+.|+.++++|+.. .+|+-.+. +-.|+
T Consensus 184 ~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~EDa------------------------~Rtd~ 238 (503)
T PLN03228 184 RILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCEDG------------------------GRSDK 238 (503)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccccc------------------------cccCH
Confidence 8887665554443322 67889999999861 23444211 01158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+.+.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 239 efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 239 EFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred HHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 889999999999999986 478999999998888887654
No 153
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.03 E-value=2.6 Score=39.52 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=51.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhC------Cc----eecCCcHHHHHHHhCCchHH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DV----YVSTGDWAEHLIRNGPSAFK 104 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~------gV----~v~~Gtl~E~a~~qg~~~~~ 104 (254)
..+..+++.++++.|++=+-+++-. ....+.+.+.++..++. ++ ++.|+ +- .. .+.
T Consensus 148 ~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~~ 219 (327)
T cd04738 148 EDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--ELE 219 (327)
T ss_pred HHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HHH
Confidence 4566666777778888888775543 33445666666666542 13 33343 11 11 466
Q ss_pred HHHHHHHHcCCCEEEecCCcccC
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i 127 (254)
+..+.|.+.|.+.|.+++.+..+
T Consensus 220 ~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 220 DIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHcCCcEEEEECCcccc
Confidence 77788899999999999987654
No 154
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.99 E-value=2.9 Score=39.35 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 135 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~i~~~~r~~l 135 (254)
+.+..--++++..++++.- + ||-+.. .+.+.++...+.|.-.|-|-|... -+|.++..+=
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3344445666777887774 2 342211 244556777899999999998764 2688888777
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 215 (254)
|+.+++.-= -++|-+- ..+ |. + ...+.++.|+++++..+||||.|.+|+-
T Consensus 138 I~Aa~~A~~--~~d~~I~---ART----Da-----~--------~~~g~deaI~Ra~aY~eAGAD~ifi~~~-------- 187 (294)
T TIGR02319 138 IEAAVEARE--DEDFTII---ART----DA-----R--------ESFGLDEAIRRSREYVAAGADCIFLEAM-------- 187 (294)
T ss_pred HHHHHHhcc--CCCeEEE---EEe----cc-----c--------ccCCHHHHHHHHHHHHHhCCCEEEecCC--------
Confidence 777776311 1334441 111 11 0 1125889999999999999999999962
Q ss_pred ccHHHHHHHHhccCC
Q 025344 216 LRADIIAKVIGRLGL 230 (254)
Q Consensus 216 ~r~d~i~~ii~~l~~ 230 (254)
...+.+.++.+.++.
T Consensus 188 ~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 188 LDVEEMKRVRDEIDA 202 (294)
T ss_pred CCHHHHHHHHHhcCC
Confidence 246778888888763
No 155
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.90 E-value=8.8 Score=33.40 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=77.5
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 025344 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (254)
Q Consensus 83 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~ 162 (254)
+|++-.+++ . .-...++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 72 ~iPi~~~~~-------i--~~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~---------- 130 (217)
T cd00331 72 SLPVLRKDF-------I--IDPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD---------- 130 (217)
T ss_pred CCCEEECCe-------e--cCHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC----------
Confidence 777776541 1 1224799999999999998544 455577778999998887776544421
Q ss_pred cccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC-CceEEecCCch
Q 025344 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR 241 (254)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~-~klifEAP~k~ 241 (254)
.+++++.+++|+++|.+=++..... ....+.+.++.+.++. -.++-+.=-.+
T Consensus 131 -------------------------~~e~~~~~~~g~~~i~~t~~~~~~~--~~~~~~~~~l~~~~~~~~pvia~gGI~s 183 (217)
T cd00331 131 -------------------------EEELERALALGAKIIGINNRDLKTF--EVDLNTTERLAPLIPKDVILVSESGIST 183 (217)
T ss_pred -------------------------HHHHHHHHHcCCCEEEEeCCCcccc--CcCHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 3447777889999998876532211 2334777777776642 24555544332
Q ss_pred -hHHHHHHHhCCC
Q 025344 242 -TSEWFIRRYGPK 253 (254)
Q Consensus 242 -qQ~~~I~~~Gp~ 253 (254)
.+..-+...|.+
T Consensus 184 ~edi~~~~~~Ga~ 196 (217)
T cd00331 184 PEDVKRLAEAGAD 196 (217)
T ss_pred HHHHHHHHHcCCC
Confidence 455555555543
No 156
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.79 E-value=3 Score=37.16 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
..-.+.++.++++||.+.|| |.-|+.-. .++|++.|-+==...-= -.++|+.++. ++
T Consensus 84 ~~~~~vi~~a~~~~i~~iPG~~TptEi~~A-------------~~~Ga~~vK~FPa~~~G----G~~yikal~~----pl 142 (201)
T PRK06015 84 GTTQELLAAANDSDVPLLPGAATPSEVMAL-------------REEGYTVLKFFPAEQAG----GAAFLKALSS----PL 142 (201)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECCchhhC----CHHHHHHHHh----hC
Confidence 45677889999999999998 78888754 46899999885322100 1367777666 56
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc
Q 025344 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 212 (254)
Q Consensus 148 ~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~ 212 (254)
|.+-.. .+| + ++ .+.+..+|+||+..+.. +.-++++
T Consensus 143 p~~~l~----ptG--G-------V~---------------~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 143 AGTFFC----PTG--G-------IS---------------LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred CCCcEE----ecC--C-------CC---------------HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 654442 111 1 11 46889999999998887 7767654
No 157
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.77 E-value=13 Score=33.97 Aligned_cols=173 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred hHHHHHHH-hhcccccEEeecCccc-ccCChhH-----------------HHHHHHHHHhC--CceecCC-cHHHHHHHh
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPF-----------------IEEVVKRAHQH--DVYVSTG-DWAEHLIRN 98 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~-----------------l~eKi~l~~~~--gV~v~~G-tl~E~a~~q 98 (254)
..+.+++. ....-+|++=+|+=.| .+.+-.. +-+-++-.+++ ++++. - +...-.+..
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~ 102 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRK 102 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhh
Confidence 44555333 3445699999998321 1111111 22333334433 55444 3 555555555
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+++|++.|++.|++.|=|=| +|.++..++++.++++|+.+..=+.-.
T Consensus 103 ---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv~P~------------------------- 150 (256)
T TIGR00262 103 ---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLVAPN------------------------- 150 (256)
T ss_pred ---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEECCC-------------------------
Confidence 489999999999999998875 577888999999999988765422220
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHH---HHHHhccCCCceEEecCCc-hhHHHHHHHhCCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII---AKVIGRLGLEKTMFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i---~~ii~~l~~~klifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
++.++++.+.+. ..|--++|- ..|++.....+..++. ..+-+..+. .|+.+-=-+ ..|+--+..+|.|
T Consensus 151 ----T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~vgfGI~~~e~~~~~~~~GAD 222 (256)
T TIGR00262 151 ----ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAYSAK-PVLVGFGISKPEQVKQAIDAGAD 222 (256)
T ss_pred ----CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhhcCC-CEEEeCCCCCHHHHHHHHHcCCC
Confidence 123334444332 234444443 2366655444444433 322222222 466665544 5566666666654
No 158
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=90.73 E-value=2.7 Score=38.62 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=71.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|-|+|=+--.. ++.++..++++.+.+.||.|+.|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999665554 46778889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 238 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP 238 (254)
-+.+++.+++||..|-|..|.+..- ++..+...+++..+|-+.+ |-|.=
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESG 210 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESG 210 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCC
Confidence 3456677999999999999976432 4456667778888886655 44443
No 159
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.58 E-value=1.7 Score=40.44 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=67.9
Q ss_pred CcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHH
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLR 134 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~ 134 (254)
.|+..+-..+.+.+.++-.++. ++++.. +||-+ +.....++.+.+.+.|.+.|-|+..+.. .+..-..+
T Consensus 108 ~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~ 182 (319)
T TIGR00737 108 AGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWD 182 (319)
T ss_pred ccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHH
Confidence 3444555677788888887653 454432 34532 2124678899999999999999865432 22122357
Q ss_pred HHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH-HcCCcEEEEecccccc
Q 025344 135 YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 211 (254)
Q Consensus 135 lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL-eAGA~~ViiEargi~d 211 (254)
+++.+++. +.+. . ++ .++ +.| .+.+.+.| +.|||.||+ ||+++.
T Consensus 183 ~i~~i~~~-------~~ip--v--i~-nGg----------------I~~----~~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 183 IIARVKQA-------VRIP--V--IG-NGD----------------IFS----PEDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred HHHHHHHc-------CCCc--E--EE-eCC----------------CCC----HHHHHHHHHhhCCCEEEE-Chhhhh
Confidence 78888773 2221 1 01 011 113 45566666 579999999 887653
No 160
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.51 E-value=3.6 Score=37.92 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~s~v 159 (254)
.+-+..+.|++.|||.|||.-+.--| +.+.| +++|+.+++. +..-.-+++|....+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~-~g~d~~i~vris~~~~ 220 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA-VGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH-cCCCceEEEEechhcc
Confidence 44555566777999999998752111 11234 4556666653 1011124554322110
Q ss_pred CCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 160 PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 160 ~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+. -.+.++.++.++..-++|+++|-+=++
T Consensus 221 ------------~~~------g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 221 ------------VPG------GLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred ------------CCC------CCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 001 125788899999999999999987554
No 161
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.46 E-value=1.5 Score=41.17 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=77.3
Q ss_pred HHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHc
Q 025344 77 KRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 77 ~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~~~~r~~lI~~~~~~ 142 (254)
+++..-+|++.- + ||-+ +..+.+.++...+.|.-+|-|-|.. --+|.++...=|+.+++.
T Consensus 72 ~I~~~~~iPviaD~d~GyG~------~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 72 RITDACDLPLLVDIDTGFGG------AFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 344555677664 2 4432 2356677788889999999998854 236888888888888774
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHH
Q 025344 143 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 222 (254)
Q Consensus 143 G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~ 222 (254)
-- -++|-+- ..+ |. + .....++.|+++++..+||||.|.+|+- -..+.+.
T Consensus 146 ~~--~~d~~Ii---ART----Da-----~--------~~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~ 195 (292)
T PRK11320 146 RT--DPDFVIM---ART----DA-----L--------AVEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYR 195 (292)
T ss_pred cc--CCCeEEE---Eec----Cc-----c--------cccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHH
Confidence 11 1333331 111 11 0 0125899999999999999999999972 1366777
Q ss_pred HHHhccC
Q 025344 223 KVIGRLG 229 (254)
Q Consensus 223 ~ii~~l~ 229 (254)
++.+.++
T Consensus 196 ~~~~~~~ 202 (292)
T PRK11320 196 RFADAVK 202 (292)
T ss_pred HHHHhcC
Confidence 7777665
No 162
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.46 E-value=1.6 Score=41.82 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=60.3
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
+.+++-|.++|-|-+|+ ..+...|+.+.+.|.-|.-.+|..-..... ++.+ +-...-.....++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~-------lGGy----kvqGr~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQAISV-------LGGF----RPQGRTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccceeehh-------hcCc----cccCCCHHHHHHH
Confidence 34477899999999997 567899999999999999999985221110 0000 0000011236789
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 025344 188 IRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEa 206 (254)
++.++.--+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
No 163
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.40 E-value=2 Score=38.93 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+.+..+.+.+.|+++|||+-++-.. ..+.-.++++.+++. +..-+.+|-..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~----------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA---VDIPLLVKLSP----------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc---cCCCEEEEeCC-----------------
Confidence 45566777788899999998775432 234556788888873 11114555221
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
..+.++.++.++...++|||.|.+-.+
T Consensus 172 -------~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 172 -------YFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred -------CCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 013667889999999999999998765
No 164
>PLN02417 dihydrodipicolinate synthase
Probab=90.35 E-value=2.2 Score=39.19 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.++++++-+.|.+.|=+.-. +..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv----------------------- 77 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT----------------------- 77 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-----------------------
Confidence 6888999999999999987544 3489999999999988773 1 1111 122
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..++.+.+++++..-++|||.|++-.-
T Consensus 78 ----~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 78 ----GSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ----CCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0114788899999999999999999775
No 165
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=90.28 E-value=2.7 Score=38.16 Aligned_cols=141 Identities=23% Similarity=0.339 Sum_probs=88.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC----C
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG----F 115 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG----F 115 (254)
.+-+.|..+| ||.+=+|+.. .-|.+. +.++.+++. ++.+. .|. +. -.+.++.+.+.| +
T Consensus 24 ~i~~~L~~~G--v~~iEvg~~~--~~~~~~--~~~~~l~~~~~~~~~~--~l~-----r~---~~~~v~~a~~~~~~~~~ 87 (268)
T cd07940 24 EIARQLDELG--VDVIEAGFPA--ASPGDF--EAVKRIAREVLNAEIC--GLA-----RA---VKKDIDAAAEALKPAKV 87 (268)
T ss_pred HHHHHHHHcC--CCEEEEeCCC--CCHHHH--HHHHHHHHhCCCCEEE--EEc-----cC---CHhhHHHHHHhCCCCCC
Confidence 3344556666 7788887643 233332 555555543 33222 111 21 133345555556 9
Q ss_pred CEEEecCCccc--------CCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 116 DTIELNVGSLE--------IPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 116 ~~IEISdGti~--------i~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
+.|-+....-+ .+. +.-.++|+.+++.|++|. |+..+. + ..|
T Consensus 88 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~---------~---------------~~~ 141 (268)
T cd07940 88 DRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDA---------T---------------RTD 141 (268)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecC---------C---------------CCC
Confidence 99999775422 222 344578999999998755 443211 0 015
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
++.+.+.+++..++|++.| .+.|..|...++.+.++++.+-
T Consensus 142 ~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 142 LDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999876 4789999999999988886653
No 166
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=90.11 E-value=2.1 Score=35.53 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
|+.++++||+.||++-....... ++..++.+.++++|+++.+=-...+.........++ ..+ ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~-----~~~------r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA-----NDE------REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS-----SSH------HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc-----chh------hHHH
Confidence 57899999999999987765554 577899999999999965533332221110000000 000 1112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
.+.+.+.++..=..|+..|++-+-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCceeecCc
Confidence 555666666666679999999854
No 167
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.97 E-value=2.7 Score=36.59 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCcEEEEecccccccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
.+.+++.+++||+-|+|=+ .||+..
T Consensus 184 ~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 184 PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 4566777899999999844 355443
No 168
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=89.96 E-value=5.2 Score=38.51 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=81.7
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
.-|+-+=||+||..+++.+.|++.++.++++= ...+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45889999999999999999999999998751 11111 13333333332 25789999999999988855444
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
.-+.++-.+.|+.+++.+..|- +..-.+. + + ++.+.+.+.++..++.+.+
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl--P---g------------------qt~~~~~~~l~~~~~l~p~ 203 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL--P---G------------------QTLDEALADVETALAFGPP 203 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC--C---C------------------CCHHHHHHHHHHHHhcCCC
Confidence 1234455567777777533222 2222221 1 1 1478888889999999998
Q ss_pred EEE
Q 025344 201 MIM 203 (254)
Q Consensus 201 ~Vi 203 (254)
.|-
T Consensus 204 ~is 206 (394)
T PRK08898 204 HLS 206 (394)
T ss_pred EEE
Confidence 763
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.91 E-value=0.64 Score=42.86 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC----------hhHH
Q 025344 70 PFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----------EETL 132 (254)
Q Consensus 70 ~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r 132 (254)
..+.|.++-.++. ++ ++.++.+.+--+.. +...++++.+.++|.+.|+||.|+..-+ ....
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~--~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL--EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH--HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 4456666666653 32 33443222111111 1456677888899999999999986432 2344
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc-CCcEEEEeccccc
Q 025344 133 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVC 210 (254)
Q Consensus 133 ~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA-GA~~ViiEargi~ 210 (254)
.++++.+++. +++ +..-.| .+. + .+.+++.|++ |||.|.+ +|.++
T Consensus 270 ~~~~~~ir~~-------~~i--PVi~~G--------gi~-----------t----~~~a~~~l~~g~aD~V~i-gR~~l 315 (327)
T cd02803 270 LELAEKIKKA-------VKI--PVIAVG--------GIR-----------D----PEVAEEILAEGKADLVAL-GRALL 315 (327)
T ss_pred HHHHHHHHHH-------CCC--CEEEeC--------CCC-----------C----HHHHHHHHHCCCCCeeee-cHHHH
Confidence 5667777663 222 110011 111 2 5567777888 7999998 67654
No 170
>PRK06801 hypothetical protein; Provisional
Probab=89.81 E-value=14 Score=34.57 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.-+.++.|-+.||+.|=+. |+- +|.++-. ++.+.++..|.-|--|+|. +|..++.. ...+.. .
T Consensus 86 ~~e~i~~Ai~~GftSVm~D-~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v---~~~~~~--~ 152 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMFD-GST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGA---LYGEAD--S 152 (286)
T ss_pred CHHHHHHHHHhCCcEEEEc-CCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCc---ccCCcc--c
Confidence 3466778889999999994 442 4544443 4667788899888888887 22222210 000000 0
Q ss_pred ccccCHHHHHHHHHHHH-HcCCcEEEEecc----cccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCL-EAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dL-eAGA~~ViiEar----gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..-.+| ++++++. +.|+|++=+ += |.|+..-.++-+.+.+|-+.++
T Consensus 153 ~~~T~p----e~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~ 203 (286)
T PRK06801 153 AKFTDP----QLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTG 203 (286)
T ss_pred ccCCCH----HHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 001134 5555555 579999999 63 7898766799999999987765
No 171
>PRK04302 triosephosphate isomerase; Provisional
Probab=89.77 E-value=3.6 Score=36.39 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+.+.+.++++|.+.|-+-+.--.++.++-.++++.+++.|+.++.
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE
Confidence 455888899999999888875667788888899999999888774
No 172
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.75 E-value=1.9 Score=39.57 Aligned_cols=74 Identities=27% Similarity=0.340 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 025344 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
.+.+..+.+++.| ||+|||+-++-. -..+...++|+.+++.- -+| +.+|-
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl----------------- 164 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKL----------------- 164 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEc-----------------
Confidence 4556667778889 999999654322 23456678888888752 112 44541
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +.++.++.++...++||+.|.+
T Consensus 165 ~~---------~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 165 TP---------NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CC---------CchhHHHHHHHHHHcCCCEEEE
Confidence 11 2446677888888999998875
No 173
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=89.70 E-value=4.8 Score=40.31 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.|++.+.+.|++.+-|-|..-++ +.-...|+.+++.|..+..-+... . +|
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~--~n~~~ai~~ak~~G~~~~~~i~yt--~-------sp--------------- 158 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDP--RNIQQALRAVKKTGKEAQLCIAYT--T-------SP--------------- 158 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCH--HHHHHHHHHHHHcCCEEEEEEEEE--e-------CC---------------
Confidence 468899999999999999999976644 444578999999998765323321 1 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.-+.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHHH
Confidence 11578889999999999999774 688999999999999987763
No 174
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=89.58 E-value=1.7 Score=38.74 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 34455 799999999999999999954 222 2455666677899999753
No 175
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=89.50 E-value=5.5 Score=37.20 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=72.8
Q ss_pred chhHHHHHHHhhc-ccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHh---CCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRN---GPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag-~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~q---g~~~~~~yl~~~k~ 112 (254)
++.++.+.++.+. .-++-+=|..|.....+.+.+.+.++..++++..+.. =+..|+.... | -..++-++.+|+
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~ 151 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKE 151 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 4444444443222 2266677777877677788888999999987643332 2566664332 3 124899999999
Q ss_pred cCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCcccce
Q 025344 113 VGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 113 lGF~~IEI-----S-dGti------~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 99987641 1 1111 347889999999999999987653
No 176
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=89.50 E-value=3.2 Score=38.21 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+++| +.+++..|=|+|=+-... ++.++..++++.+.+.||.++.|++-
T Consensus 119 id~~QI~eA~~~GADaVLLI~~~--L~~~~l~~l~~~a~~lGle~lVEVh~----------------------------- 167 (254)
T PF00218_consen 119 IDPYQIYEARAAGADAVLLIAAI--LSDDQLEELLELAHSLGLEALVEVHN----------------------------- 167 (254)
T ss_dssp -SHHHHHHHHHTT-SEEEEEGGG--SGHHHHHHHHHHHHHTT-EEEEEESS-----------------------------
T ss_pred CCHHHHHHHHHcCCCEeehhHHh--CCHHHHHHHHHHHHHcCCCeEEEECC-----------------------------
Confidence 3344 678999999999887665 45677789999999999999999876
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCC
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~k-lifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
-+.+++.+++||+.|-|..|.+-. -++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|
T Consensus 168 ------~~El~~al~~~a~iiGINnRdL~t--f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~d 233 (254)
T PF00218_consen 168 ------EEELERALEAGADIIGINNRDLKT--FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGAD 233 (254)
T ss_dssp ------HHHHHHHHHTT-SEEEEESBCTTT--CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-S
T ss_pred ------HHHHHHHHHcCCCEEEEeCccccC--cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCC
Confidence 345667789999999999996632 2344556677887777544 34454433 3555566666543
No 177
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.49 E-value=1.8 Score=40.99 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=53.0
Q ss_pred hhHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhC-C-----ceec----CCcHHHHHHHhCCchH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH-D-----VYVS----TGDWAEHLIRNGPSAF 103 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~-g-----V~v~----~Gtl~E~a~~qg~~~~ 103 (254)
...+..+++.+++|.|++=+-+++-. ....+.+.+.++-.++. + ++|. |+. .. +.+
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~------~~--~~~ 227 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL------SD--EEL 227 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC------CH--HHH
Confidence 45777788888889999888775543 23344566666666652 2 4333 330 11 146
Q ss_pred HHHHHHHHHcCCCEEEecCCccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~ 126 (254)
.+..+.|.+.|.|.|.+++++.+
T Consensus 228 ~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 228 DDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred HHHHHHHHHhCCcEEEEeCCccc
Confidence 77888889999999999999854
No 178
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.47 E-value=8 Score=34.63 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCce---------------ecCC
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~---------------v~~G 89 (254)
.++.+.+=|+ . ....++.+++. | .|. +..||+.+-+++.+++-.+.+.+-.|. |.+-
T Consensus 74 ~ipv~~~GGi--~-s~~~~~~~l~~-G--a~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGI--R-SVEDARRLLRA-G--ADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 4666666665 2 34666666763 3 444 466788888888887766655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccc
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRD 164 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d 164 (254)
+|.+. .. ....++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++. ...++..-|+
T Consensus 146 ~~~~~--~~--~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv------------ 206 (253)
T PRK02083 146 GGRKP--TG--LDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGA------------ 206 (253)
T ss_pred CCcee--cC--CCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCC------------
Confidence 34432 12 25778899999999999888 457777664 4566666653 2333332222
Q ss_pred cccccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 165 RAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.|++++.+ .++ .||+-||+=. .-..|.+.-..+-+.+++-|
T Consensus 207 -----------------~s~~d~~~----~~~~~G~~gvivg~---al~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK02083 207 -----------------GNLEHFVE----AFTEGGADAALAAS---IFHFGEITIGELKAYLAEQG 248 (253)
T ss_pred -----------------CCHHHHHH----HHHhCCccEEeEhH---HHHcCCCCHHHHHHHHHHCC
Confidence 24445444 444 6999999832 22234555555555555444
No 179
>PRK08185 hypothetical protein; Provisional
Probab=89.45 E-value=13 Score=34.88 Aligned_cols=148 Identities=16% Similarity=0.286 Sum_probs=89.6
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH--
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR-- 134 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~-- 134 (254)
+-++-|+...++.+...--..+++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 42 l~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t 111 (283)
T PRK08185 42 IAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVALT 111 (283)
T ss_pred EEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHH
Confidence 44444444444545455555677777776663 11122 11344666778999999987665 56666544
Q ss_pred --HHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc-CCcEEEE---eccc
Q 025344 135 --YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMI---DSDD 208 (254)
Q Consensus 135 --lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA-GA~~Vii---Earg 208 (254)
+++.++..|..|--|+|. -+..+.+...+.. ...++ | .++++++.+. |+|++-+ -+-|
T Consensus 112 ~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~-~~~~t----------~----peea~~f~~~TgvD~LAvaiGt~HG 175 (283)
T PRK08185 112 KEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVS-EIIYT----------D----PEQAEDFVSRTGVDTLAVAIGTAHG 175 (283)
T ss_pred HHHHHHHHHcCCeEEEEEee-ccCcccccccccc-cccCC----------C----HHHHHHHHHhhCCCEEEeccCcccC
Confidence 555667889999999988 2221110000000 00011 3 5666778877 9999988 3358
Q ss_pred cccc--CCCccHHHHHHHHhccCC
Q 025344 209 VCKH--ADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 209 i~d~--~g~~r~d~i~~ii~~l~~ 230 (254)
+|.. .-+++-+.+.+|-+.++.
T Consensus 176 ~y~~~~kp~L~~e~l~~I~~~~~i 199 (283)
T PRK08185 176 IYPKDKKPELQMDLLKEINERVDI 199 (283)
T ss_pred CcCCCCCCCcCHHHHHHHHHhhCC
Confidence 9977 567889999999877653
No 180
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.43 E-value=3.9 Score=35.50 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++. .. .-+.+|...
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~------------ 132 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRL------------ 132 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEee------------
Confidence 455556667788999999997651 12333345667777653 10 124444211
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCCccHHHHHHHHhccC
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~i~~ii~~l~ 229 (254)
.|. +.++.++.++..-++|+++|.+-++.-.. ..+....+.+.++.+.++
T Consensus 133 ------~~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 133 ------GWD-----DEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred ------ccC-----CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 111 01356777777788999999998762211 123334566666655443
No 181
>PRK12999 pyruvate carboxylase; Reviewed
Probab=89.42 E-value=3.4 Score=45.54 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++|++.+.+.|++.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -|+. + ..
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~~--------~----~~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDPA--------R----AK 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCCC--------C----CC
Confidence 57889999999999999999988886 446678999999998655555552 111 1221 1 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.++.-.++||+.| .|.|..|-+.+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i-----~ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHIL-----AIKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCccCCCCHHHHHHHHHHH
Confidence 268999999999999999966 468889999998888888655
No 182
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.35 E-value=4.8 Score=38.66 Aligned_cols=142 Identities=21% Similarity=0.320 Sum_probs=92.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=+||=.+ .++ =.+.++.+.+.+.....-+| .+ ...+-++.+.+.|++.|-|+
T Consensus 30 ~ia~~L~~~G--V~~IE~G~p~~---~~~-~~e~i~~i~~~~~~~~i~~~-----~r---~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 30 AIARMLDEIG--VDQIEAGFPAV---SED-EKEAIKAIAKLGLNASILAL-----NR---AVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHHHHhC--CCEEEEeCCCc---ChH-HHHHHHHHHhcCCCeEEEEE-----cc---cCHHHHHHHHhCCcCEEEEE
Confidence 3455666777 78888886442 222 23445555555554222233 11 12445778888999999998
Q ss_pred CCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+-++ +. +.-.+.|+.+++.|+.| .|+-.+. . ..|++.+++
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~---------~---------------r~~~~~l~~ 149 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDA---------S---------------RTDLDFLIE 149 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccC---------C---------------CCCHHHHHH
Confidence 765443 22 33345888999999874 3332110 0 115899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.|. ++|..|...+..+.+++..+
T Consensus 150 ~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 150 FAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 99999999999764 68999999999888888655
No 183
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.22 E-value=1.7 Score=40.30 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
.+.....++..+.+|||-+|||.- -++|..-.+..+.++++++.+
T Consensus 200 r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 200 REFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 566678888899999999999994 789999999999999998765
No 184
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=89.21 E-value=9 Score=36.94 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHH
Q 025344 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLV 139 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~----G-t----l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~ 139 (254)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=|.-.. +|.++= .+++++|
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHH
Confidence 3344688899998874 5 3 68888765 4689999999999999776544 455443 3667888
Q ss_pred HHcCCcccceeeeecCCCCCCCccccc-cccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEe---cccccc-cC
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRA-FGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMID---SDDVCK-HA 213 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~-~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiE---argi~d-~~ 213 (254)
...|.-|--|+|.--+. +-+...+.. -...+| ||++..+.+++--. -|.|.+=+= +-|+|. ..
T Consensus 151 h~~gvsVEaElG~igg~-ed~~~~~~~~~~~~yT----------dPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~ 219 (345)
T cd00946 151 AKINMWLEMEIGITGGE-EDGVDNSGVDNAELYT----------QPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGN 219 (345)
T ss_pred HHcCCEEEEEecccCCc-ccCcccccccccccCC----------CHHHHHHHHHHhccCCCceeeeeeccccccCCCCCC
Confidence 89999999999984221 111000000 001122 55554444433111 277755432 239998 47
Q ss_pred CCccHHHHHHH
Q 025344 214 DSLRADIIAKV 224 (254)
Q Consensus 214 g~~r~d~i~~i 224 (254)
-+++-+.+++|
T Consensus 220 p~L~~~~L~~I 230 (345)
T cd00946 220 VKLQPEILGEH 230 (345)
T ss_pred CccCHHHHHHH
Confidence 78999999999
No 185
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=89.19 E-value=5 Score=42.05 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=81.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|-|+|=+-...+ +.++..++++.+++.||.|+.|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999999887776 4778999999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP~k-~qQ~~~I~~~Gp~ 253 (254)
-+.+++.+++||..|-|..|.+-.- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+.+.|.|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~d 235 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGAD 235 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCC
Confidence 3456678999999999999976332 4446667777777876655 4454433 4556666666654
No 186
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=89.07 E-value=17 Score=32.98 Aligned_cols=167 Identities=17% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccC----ChhHHHHHHHHHHhC--CceecC--C-cHH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM----PKPFIEEVVKRAHQH--DVYVST--G-DWA 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~----~~~~l~eKi~l~~~~--gV~v~~--G-tl~ 92 (254)
+..|++.++.+|. .+...+..++.+..|-. +..+.|-+.-. +.+.+.+..+++..+ .|..-. | .++
T Consensus 29 ~~~gv~~~~~~~~----~~~~~~~~~~l~~~~~~-v~~~~GiHP~~~~~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~ 103 (258)
T PRK11449 29 AQAGVGKIIVPAT----EAENFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQALERRPAKVVAVGEIGLDLF 103 (258)
T ss_pred HHCCCCEEEEeeC----CHHHHHHHHHHHHhCCC-EEEEEeeCcCccccCCHHHHHHHHHHHHhCCCCEEEEEecccCCC
Confidence 3669999999997 56788889999888864 66777776533 233455555455433 221111 3 222
Q ss_pred --H--HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 93 --E--HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 93 --E--~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
+ ...++. -|...++.|++++...+==+-+ ..+ .+++.+++.+... -++-...+ |
T Consensus 104 ~~~~~~~~Q~~--vf~~ql~lA~~~~~Pv~iH~r~----a~~---~~~~il~~~~~~~---~~i~H~fs--G-------- 161 (258)
T PRK11449 104 GDDPQFERQQW--LLDEQLKLAKRYDLPVILHSRR----THD---KLAMHLKRHDLPR---TGVVHGFS--G-------- 161 (258)
T ss_pred CCCCCHHHHHH--HHHHHHHHHHHhCCCEEEEecC----ccH---HHHHHHHhcCCCC---CeEEEcCC--C--------
Confidence 1 122333 7999999999999998865655 223 4455555544211 12322111 1
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc-ccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-VCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg-i~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.= + -| ++.+ +.+.+.++++.+|+++|++|...|
T Consensus 162 --------------~----~~~a~~~l~~G~~iS-~--~g~it~~----~~~~~~~~~~~ipldriL~ETD~P 209 (258)
T PRK11449 162 --------------S----LQQAERFVQLGYKIG-V--GGTITYP----RASKTRDVIAKLPLASLLLETDAP 209 (258)
T ss_pred --------------C----HHHHHHHHHCCCEEE-e--Ccccccc----CcHHHHHHHHhCChhhEEEecCCC
Confidence 1 668889999997631 1 12 2222 335578899999999999998765
No 187
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.77 E-value=5.5 Score=36.79 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=40.2
Q ss_pred cccccCChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 62 GSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 62 GT~~l~~~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
|......++.+.+.++..++. ++++.. -+. +.+.+.++.+.|.+.|.+.|=++|-+..
T Consensus 146 G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 146 GAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred chhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 444556778899999888764 555443 111 1125778888899999999998886643
No 188
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.72 E-value=1.1 Score=40.04 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 74 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 74 eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+-++...+++| .|.-|.=.|. .-+..+.+.+.|+++|||. +......+.|+.+++.. |++
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~~--------a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~-- 67 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLED--------AVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEA-- 67 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHHH--------HHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCC--
Confidence 34466678887 4444533333 3345677889999999998 55667889999998731 221
Q ss_pred ecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----------cccccCCCccHHHH
Q 025344 153 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DVCKHADSLRADII 221 (254)
Q Consensus 153 k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----------gi~d~~g~~r~d~i 221 (254)
-+|+ +. .+ + .++++..++|||++++.=+= ++--==|-....++
T Consensus 68 -----~IGA--GT----Vl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 68 -----LIGA--GT----VL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -----EEEE--ee----cc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2221 11 12 2 38899999999999997652 21111155555555
Q ss_pred HHHHhccCCCceEE
Q 025344 222 AKVIGRLGLEKTMF 235 (254)
Q Consensus 222 ~~ii~~l~~~klif 235 (254)
.+.. +.|.+-+-+
T Consensus 122 ~~a~-~~Ga~~vKl 134 (212)
T PRK05718 122 MLGM-ELGLRTFKF 134 (212)
T ss_pred HHHH-HCCCCEEEE
Confidence 5433 466555544
No 189
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.66 E-value=4.3 Score=41.76 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+-++.|++.+.+.|+|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888877665 7999999998665432221 1 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.-+++.+++.++.-.++||+.|- |.|..|-..+..+.++++.+-
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~alk 193 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGLK 193 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHHH
Confidence 12589999999999999998764 688899999988888886653
No 190
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=88.59 E-value=6.1 Score=36.14 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGI------------------------------ 186 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGI------------------------------ 186 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCc------------------------------
Confidence 66777777777777766432111223455555566666776653222222
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc-ccc-ccCCCccHHHHHHHHhc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 227 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar-gi~-d~~g~~r~d~i~~ii~~ 227 (254)
|++..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+|+..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4667778888899999999984332 234 44699999999998864
No 191
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.44 E-value=3.2 Score=38.07 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|+ +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34478889999999999999885543 58999999999998887421111 122 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEeccccccc-CCCccHHHHHHHHhccCCCceEEecCC
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
..++.+.++.++..-++|||.|++=.--.|.. .-+--.+-...|++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01478889999999999999999865433331 11111222334444 55567777764
No 192
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.43 E-value=8.8 Score=38.39 Aligned_cols=143 Identities=22% Similarity=0.297 Sum_probs=91.9
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=.||=.+.-.+.+.+++..++. .+..++. |. + ...+-++.+.+.|.+.|-+.
T Consensus 28 ~ia~~L~~~G--v~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a--~~-----r---~~~~di~~a~~~g~~~v~i~ 93 (488)
T PRK09389 28 EIARKLDELG--VDVIEAGSAITSEGEREAIKAVTDEG--LNAEICS--FA-----R---AVKVDIDAALECDVDSVHLV 93 (488)
T ss_pred HHHHHHHHcC--CCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEe--ec-----c---cCHHHHHHHHhCCcCEEEEE
Confidence 4455677777 88999987554333333444433321 1223322 21 2 12344778888999999998
Q ss_pred CCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~i~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
..+=++- . +.-.+.|+.+++.|+.| +|+..+. . . .|++.+++
T Consensus 94 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~---------~-----r----------~~~~~l~~ 147 (488)
T PRK09389 94 VPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDA---------S-----R----------ADLDFLKE 147 (488)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeC---------C-----C----------CCHHHHHH
Confidence 8665442 1 23345678888988764 4444211 0 1 15888999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.++...++||+.|. ++|..|-..+..+.+++..+-
T Consensus 148 ~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 148 LYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred HHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 99999999999864 689999999999988887663
No 193
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=88.40 E-value=2.3 Score=39.65 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------dGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|++.||...+=+
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv------------------ 157 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV------------------ 157 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee------------------
Confidence 58899999999999887522 2221 3455566789999999888754411
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+ + .+++++-.+||||.|.+--
T Consensus 158 --f-----------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 158 --F-----------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --c-----------C----HHHHHHHHHcCCCEEEecC
Confidence 1 1 6778888899999998865
No 194
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=88.31 E-value=22 Score=33.20 Aligned_cols=105 Identities=18% Similarity=0.320 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--ccccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GAYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~~~~~~~~~~~~ 180 (254)
+.+..|-+.||+.|=|....+++.+-- =.++++.++..|.-|--|+|.=-+. .|... ...+|
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~------e~~~~~~~~~~T-------- 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE------EDGVVGDEGLLT-------- 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc------cCCcccccccCC--------
Confidence 555677899999999987665444322 2478889999999999999984221 11100 01122
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEec---cccccc-CCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~-~g~~r~d~i~~ii~~l~ 229 (254)
||++ ++++.+ -|+|.+-+=- -|.|.. .-+++.+++.+|-+.++
T Consensus 149 --~pe~----a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~ 196 (276)
T cd00947 149 --DPEE----AEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN 196 (276)
T ss_pred --CHHH----HHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 5544 455554 4888776644 289988 78899999999998775
No 195
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=88.19 E-value=4.3 Score=37.12 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=87.7
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDT 117 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~ 117 (254)
.+-+.|..+| ||.+=+||+.+. |.+ .+-++.+.+.+ .... .|.-. ...+.. .-+.-++.+.+.|.+.
T Consensus 24 ~i~~~L~~~G--v~~IE~G~~~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 24 RIARKLDELG--VDYIEGGWPGSN--PKD--TEFFARAKKLKLKHAKLA--AFGST-RRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred HHHHHHHHcC--CCEEEecCCcCC--HHH--HHHHHHHHHcCCCCcEEE--EEecc-cccCCCccchHHHHHHHhCCCCE
Confidence 3445566777 899999996533 321 22233333332 2211 11100 011100 0124577788999999
Q ss_pred EEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 118 IELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 118 IEISdGti--------~i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
|-|...+- ..+ -+.-.++|+++++.|++|. ++... . -|. . ..+++
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~----~---~d~--------~------~~~~~ 151 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH----F---FDG--------Y------KANPE 151 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe----c---ccc--------C------CCCHH
Confidence 99864432 122 2234678999999998652 22210 0 000 0 11588
Q ss_pred HHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 186 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+++.+++..++|++.|. |.|..|...+..+..+++.+
T Consensus 152 ~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 152 YALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHHHH
Confidence 889999999999999764 78899999999888887654
No 196
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.15 E-value=5.4 Score=43.96 Aligned_cols=159 Identities=9% Similarity=0.086 Sum_probs=108.1
Q ss_pred chhHHHHHHHhh-cccccEEeecCcccccCChhHHHHHHHHHHhCCc----eec-CCcHHHHHHH--hCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVS-TGDWAEHLIR--NGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~a-g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV----~v~-~Gtl~E~a~~--qg~~~~~~yl~~~ 110 (254)
+-.-.+++++.| ..-||.+-+.-...- -+.++.-++.++++|- .+| +|..+ -+.. ..++.+-++.+++
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd---~~~~~~~i~~vk~~g~~~~~~i~ytg~~~-d~~~~~~~~~~~~~~a~~l 700 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNW---VENMRVAIDAVRETGKIAEAAICYTGDIL-DPARAKYDLDYYVDLAKEL 700 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCCh---HHHHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCCCHHHHHHHHHHH
Confidence 335667766654 445999998865444 3459999999999993 222 23222 1211 2333556677778
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.++|.+.|=|.|-.--+.+..=.++|+.+++.= .+--+++- + .|...-+..
T Consensus 701 ~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~---H-------------------------nt~Gla~an 751 (1146)
T PRK12999 701 EKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHT---H-------------------------DTSGNGLAT 751 (1146)
T ss_pred HHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEe---C-------------------------CCCchHHHH
Confidence 889999999999999999999999999999841 11112222 1 123444778
Q ss_pred HHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCC
Q 025344 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
.-..++|||+.|=+=-.|+-...||...+.+-..++..+.
T Consensus 752 ~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 752 YLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred HHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCC
Confidence 8889999999765555588888898888877666665553
No 197
>PLN02591 tryptophan synthase
Probab=88.10 E-value=1.6 Score=40.03 Aligned_cols=104 Identities=10% Similarity=0.141 Sum_probs=68.8
Q ss_pred hHHHHHHH-hhcccccEEeecCccc-ccCChhHHH--------------HHHHHHHh----CCceecCCcHHHHHHHhCC
Q 025344 41 NVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRNGP 100 (254)
Q Consensus 41 ~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~l~--------------eKi~l~~~----~gV~v~~Gtl~E~a~~qg~ 100 (254)
..+.+++. ..-..+|++=+|+=.| .+.+-..++ +-.++.++ +++++..=|++-..+..
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~-- 93 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR-- 93 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh--
Confidence 44444433 3445699999997543 122222222 22233322 34443322666666666
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
.+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+.
T Consensus 94 -G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 94 -GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred -HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 59999999999999999887 58889999999999999998877543
No 198
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.08 E-value=4.4 Score=35.36 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.= ..-+-+. + +
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~---~~pv~~~---------G----------------g 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV---GIPVQVG---------G----------------G 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc---CCCEEEe---------C----------------C
Confidence 455667777789999999997654332 444467888877731 0011110 1 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEe
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifE 236 (254)
..+ .+.+++.+++||+.|++=.. ... ..+.+.+++++++.+++++=
T Consensus 82 I~~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 IRS----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred cCC----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 112 66778888899999998443 332 26778888888877666554
No 199
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=88.03 E-value=16 Score=33.79 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=72.3
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCcHHHHHHH---hCCchHHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIR---NGPSAFKEYVEDCKQ 112 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~---qg~~~~~~yl~~~k~ 112 (254)
.+..+.+.++.+-+ =++-+-|..|.....+.+.+.+.++..+++.. .++.=+-.|+.+. .| -..++.++.+|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44454444443222 24566666776666677889999999998753 3333356676532 22 135899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 025344 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.|.+.+- ++.-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 9999772 321111 35788999999999999988775
No 200
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=87.78 E-value=12 Score=35.12 Aligned_cols=107 Identities=11% Similarity=0.141 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-c---cccccccCCCcc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-A---FGAYVARAPRST 178 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~---~~~~~~~~~~~~ 178 (254)
+.+..|-+.||+.|=+....+++.+--+ .++++.|...|.-|-.|+|.=-+ ..|. . -...+|
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~~~~~~~T------ 153 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG------VEDDLSVDEEDALYT------ 153 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC------ccCCCccccchhccC------
Confidence 5678889999999999866655443322 36788899999999999998421 1111 0 001122
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
||++..+.++ +-|+|.+=|== -|+|...-+++-|.+++|-+.++.
T Consensus 154 ----~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~i 201 (282)
T TIGR01858 154 ----DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDV 201 (282)
T ss_pred ----CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCC
Confidence 5655555544 36888775543 399998889999999999877653
No 201
>PRK05926 hypothetical protein; Provisional
Probab=87.71 E-value=16 Score=35.32 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=80.3
Q ss_pred ecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc----
Q 025344 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL---- 125 (254)
Q Consensus 59 fg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti---- 125 (254)
+-.|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++... .-..++.++.+|+.|++.+ |+.+-++
T Consensus 120 iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~ 199 (370)
T PRK05926 120 IVAGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETL 199 (370)
T ss_pred EEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhh
Confidence 334665555667788888888876 67765435567776543 1246899999999999764 3333333
Q ss_pred ---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 126 ---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 126 ---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
..+.++|++.++.+++.|+++-+= .-++. .++++++++.+..--+-+.+.+
T Consensus 200 ~p~~~t~~e~l~~i~~a~~~Gi~~~sg--mi~G~------------------------gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 200 APGRLSSQGFLEIHKTAHSLGIPSNAT--MLCYH------------------------RETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcccCc--eEEeC------------------------CCCHHHHHHHHHHHHhcCCccC
Confidence 346799999999999999998773 32222 1247888888877666666543
No 202
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=87.41 E-value=4.4 Score=37.66 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
--++.+..++.|++.+-|=|=-- ....-..+|+.+.+. . +.++.+. .
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg--g~~~n~~~i~~i~~~--~----~~vqvGG-------G------------------ 91 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA--DDASLAAALEALRAY--P----GGLQVGG-------G------------------ 91 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC--CCcccHHHHHHHHhC--C----CCEEEeC-------C------------------
Confidence 34455555778888766644311 222235677777762 2 2222111 1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEE
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klif 235 (254)
+. .+++++-|++||++|||=+--+. ++.+.++++.+++++.|.++|+.
T Consensus 92 -IR--~e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~Ivv 139 (262)
T PLN02446 92 -VN--SENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVL 139 (262)
T ss_pred -cc--HHHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEE
Confidence 22 38899999999999999554333 47889999999999999999886
No 203
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.34 E-value=14 Score=35.09 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
++++.++.++..-++|+|+|-|=++
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5788888888888999999998554
No 204
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.33 E-value=10 Score=34.88 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=69.8
Q ss_pred hhHHHHHHH-hhcccccEEeecCccc-ccCChhHHHHHHHHHHh------------------CCceecCCcHHHHHHHhC
Q 025344 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQ------------------HDVYVSTGDWAEHLIRNG 99 (254)
Q Consensus 40 ~~~~~DlLe-~ag~yID~lKfg~GT~-~l~~~~~l~eKi~l~~~------------------~gV~v~~Gtl~E~a~~qg 99 (254)
+..+.+++. ..-.-+|++=+|+=.| .+.+-..+++--..+-+ +++++..=|++...+..|
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhC
Confidence 355555444 3344599999997543 23333333333222222 344433336666667665
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+=+.-
T Consensus 108 ---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 108 ---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred ---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999874 578899999999999999987764443
No 205
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=87.14 E-value=11 Score=34.27 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHhCCc-eecCCc--HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhH
Q 025344 68 PKPFIEEVVKRAHQHDV-YVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEET 131 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~gV-~v~~Gt--l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------------i~i~~~~ 131 (254)
|.+++.+-+..+++... .+.-|+ .=|+... .+.+.+ +++.|||+-|+ +--+++.
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~---------a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~ 122 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRFVDLEEAYDV---------LLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKEL 122 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHH---------HHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHH
Confidence 45777777777775543 222342 2222211 122223 79999999887 3346777
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 132 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 132 r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |.
T Consensus 123 l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~~ 172 (231)
T TIGR00736 123 LKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--YP 172 (231)
T ss_pred HHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--CC
Confidence 788888888653 23 66763321 0 1234578888889999999999753 33
Q ss_pred cCCCccHHHHHHHHhccC
Q 025344 212 HADSLRADIIAKVIGRLG 229 (254)
Q Consensus 212 ~~g~~r~d~i~~ii~~l~ 229 (254)
..+....+.|.++.+.++
T Consensus 173 g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 173 GKPYADMDLLKILSEEFN 190 (231)
T ss_pred CCchhhHHHHHHHHHhcC
Confidence 223367888888887663
No 206
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.93 E-value=15 Score=34.32 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.+..|-+.||+.|=+.-..+++.+--+ .++++.|...|.-|-.|+|.=-+. +-+...+.. ...+|
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~-e~~~~~~~~-~~~~T---------- 155 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQ-EDDLVVDEK-DAMYT---------- 155 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-cCCcccccc-cccCC----------
Confidence 5778889999999999766654433222 367888899999999999984221 110000100 01122
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
||++..+.+++ -|+|.+-|== -|+|...-+++-+.+++|-+.++
T Consensus 156 ~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK12737 156 NPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS 202 (284)
T ss_pred CHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 56666655554 5888776543 39998888899999999987665
No 207
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=86.90 E-value=1.6 Score=38.47 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=71.4
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHH---HHHHcC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVE---DCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~---~~k~lG 114 (254)
....+.++++..++|||++|+|+--..-+..+.+++-++.+++++.++.--. +..+- +.+..|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Dig-----~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDIG-----NTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SSH-----HHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeecccc-----hHHHHHHHHhhhhhcCC
Confidence 5578889999999999999999877777776689999999999997665421 22111 12334444 567899
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcC
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
+|++-|+-- .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 999988743 34777778888888876
No 208
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.81 E-value=4.7 Score=35.29 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-cccC---ChhHHHHHHHHHHHc-C
Q 025344 70 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEI---PEETLLRYVRLVKSA-G 143 (254)
Q Consensus 70 ~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i---~~~~r~~lI~~~~~~-G 143 (254)
+.+.+.++.+|+ .++.+.++.. ..++ ...+.+.|+++|-++.+ .... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~----------t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS----------TLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC----------CHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 458899999999 8888776521 1222 24567899999977532 2111 112224566666664 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 144 ~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
..|....|++ + .+.+++.+++||+-|++=+ .+++
T Consensus 174 iPvia~GGI~-----------------------------t----~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN-----------------------------T----PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC-----------------------------C----HHHHHHHHHCCCCEEEEch-HhcC
Confidence 5555555552 1 4567778899999999853 3554
No 209
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.77 E-value=28 Score=32.65 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccc-cc---ccccccCCCcc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AF---GAYVARAPRST 178 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~~---~~~~~~~~~~~ 178 (254)
+.+..|-++||+.|=+.-..+++.+--+ +++++.|...|.-|--|+|.=-+ +.|. .. ...+|
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg------~e~~~~~~~~~~~~T------ 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG------QEDDLQVDEADALYT------ 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC------cccCcccccccccCC------
Confidence 5677788999999999866654433222 36788889999999999998421 1111 00 01122
Q ss_pred ccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 179 EYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|| ++++++++ -|+|..-|== -|+|...-+++-+.+.+|-+.++
T Consensus 156 ----~p----eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK09195 156 ----DP----AQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN 202 (284)
T ss_pred ----CH----HHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 45 44555554 5988776543 39999888999999999987765
No 210
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=86.61 E-value=2.7 Score=39.48 Aligned_cols=77 Identities=29% Similarity=0.390 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh--------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE--------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~--------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+.+|.+.+.+.|+|+|||+-++...+. +...++++.+++. . -+| +.+| ++|
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~-~iP-v~vK-----------------l~p 172 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-V-TIP-VAVK-----------------LSP 172 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-c-CCC-EEEE-----------------cCC
Confidence 4567888888999999999888743332 2235778877764 1 123 4554 111
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..++.+.++...++||+-|++-.+
T Consensus 173 ---------~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 173 ---------FFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred ---------CccCHHHHHHHHHHcCCCeEEEEcC
Confidence 1234567777788999999999887
No 211
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=86.61 E-value=5 Score=37.69 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=74.5
Q ss_pred EeecCcccccCChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC---Ch
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---PE 129 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---~~ 129 (254)
.|-|.|++++-+++.+.+.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+-+- ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 56677888888899999999988764 44443 2 35533 11256788888999999999999876421 12
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEeccc
Q 025344 130 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDSDD 208 (254)
Q Consensus 130 ~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEarg 208 (254)
.+ .++|++++++ +.+ +. ++. +| .. | .+.+++.++ .|||.||| |||
T Consensus 181 a~-~~~i~~ik~~-------~~i--PV--I~n-Gg-----I~-----------s----~~da~~~l~~~gadgVmi-GR~ 226 (321)
T PRK10415 181 AE-YDSIRAVKQK-------VSI--PV--IAN-GD-----IT-----------D----PLKARAVLDYTGADALMI-GRA 226 (321)
T ss_pred cC-hHHHHHHHHh-------cCC--cE--EEe-CC-----CC-----------C----HHHHHHHHhccCCCEEEE-ChH
Confidence 33 3788888773 222 10 111 11 11 2 455666665 79999999 776
Q ss_pred ccc
Q 025344 209 VCK 211 (254)
Q Consensus 209 i~d 211 (254)
++.
T Consensus 227 ~l~ 229 (321)
T PRK10415 227 AQG 229 (321)
T ss_pred hhc
Confidence 654
No 212
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.53 E-value=5.1 Score=37.80 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 135 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------i~~~~r~~l 135 (254)
+.+..-=++...-+++|.- .||-+ + . ++-+.++.+.+.|.-.|-|-|-... +|.++-++=
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3445555556666776664 25665 2 1 5677888899999999888776664 788888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|+-+++. ...+.|-+-- . -|. + ...-.++-|++++..+|||||+|-.|+.
T Consensus 139 IkAa~~a--~~~~~fvi~A---R----Tda----------~---~~~~ld~AI~Ra~AY~eAGAD~if~~al 188 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA---R----TDA----------L---LVEGLDDAIERAQAYVEAGADAIFPEAL 188 (289)
T ss_pred HHHHHHh--ccCCCeEEEe---e----hHH----------H---HhccHHHHHHHHHHHHHcCCcEEccccC
Confidence 8887774 1124444421 1 111 1 1223788999999999999999999996
No 213
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.53 E-value=3.3 Score=38.89 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--C---c---H---HHHHHHhCCchHHHHHHHHHHcC
Q 025344 46 IFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G---D---W---AEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--G---t---l---~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
-++.+++|+|+|.+|- -++.+- +.+.-+-+-|-+|-. | + | .|++...|..++ .+.+-|
T Consensus 99 ~~~~~ae~vDilQIgA---r~~rnt---dLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~v-----ilcERG 167 (281)
T PRK12457 99 QAAPVAEVADVLQVPA---FLARQT---DLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRV-----ILCERG 167 (281)
T ss_pred HHHHHhhhCeEEeeCc---hhhchH---HHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeE-----EEEeCC
Confidence 3567899999999984 233321 223333444555543 4 1 1 333333331111 123445
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceee--eecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFA--VMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g--~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
+. -|.-.+..+.+ .|-.+++. ++-|+.... +|.| |..++.. .-..+.+...
T Consensus 168 ~~-----fgy~~~~~D~~--~ip~mk~~~t~lPVi~DpSHsvq~p----~~~g~~s--------------~G~re~v~~l 222 (281)
T PRK12457 168 SS-----FGYDNLVVDML--GFRQMKRTTGDLPVIFDVTHSLQCR----DPLGAAS--------------GGRRRQVLDL 222 (281)
T ss_pred CC-----CCCCCcccchH--HHHHHHhhCCCCCEEEeCCccccCC----CCCCCCC--------------CCCHHHHHHH
Confidence 54 25555555544 45567775 777765432 2222 1112211 0125667788
Q ss_pred HHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccC-CCceE
Q 025344 191 AERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTM 234 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~-~~kli 234 (254)
++..+++|||-+|||.- -++|..-.+..+.++++++.+- +.+++
T Consensus 223 arAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i~~~~ 272 (281)
T PRK12457 223 ARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKALDDLV 272 (281)
T ss_pred HHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999994 7899999999999999987654 44443
No 214
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=86.33 E-value=7.1 Score=30.55 Aligned_cols=96 Identities=23% Similarity=0.407 Sum_probs=70.3
Q ss_pred chhHHHHHHHhhc-cc-ccEEeecCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag-~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~---gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~ 110 (254)
.+..+.+.+.... +. +..+=|+.|...++++ ..+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD--FIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh--HHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 3455555555552 32 8999999999999987 77777777775 775553 55443 6888899
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHcCCcc
Q 025344 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v 146 (254)
+++|++.|.+|--+.+ -+.++..+.++.+++.|+..
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999998855542 35567788999999999884
No 215
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=85.93 E-value=1.4 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+++.++.++++||+.||+..-. ..+..++-+.++++|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 79999999999999999996521 23566777888899999765
No 216
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.93 E-value=25 Score=32.96 Aligned_cols=161 Identities=11% Similarity=0.185 Sum_probs=101.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH---------------
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR--------------- 97 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~~Gtl----~E~a~~--------------- 97 (254)
..++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+-++ ++|+. ++.+..
T Consensus 4 v~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 4 VNGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred CcHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3566666655432 46777777888888888888888877432 22211 122211
Q ss_pred ---hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--c
Q 025344 98 ---NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--G 168 (254)
Q Consensus 98 ---qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~ 168 (254)
++ .--+.+.+|-++||+.|=+ |||- +|.++ =.++++.|...|.-|--|+|.=-+ ..|... .
T Consensus 80 HLDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~~ 149 (283)
T PRK07998 80 HLDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHVSEA 149 (283)
T ss_pred ECcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------ccccccccc
Confidence 22 2236777888999999999 5553 55543 347888899999999999998321 122100 0
Q ss_pred cccccCCCccccccCHHHHHHHHHHHH-HcCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dL-eAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
..+ .||++. ++++ +-|+|.+=+== -|+|.. -+++.|.+++|-+.++.
T Consensus 150 ~~~----------T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~v 200 (283)
T PRK07998 150 DCK----------TEPEKV----KDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPV 200 (283)
T ss_pred ccc----------CCHHHH----HHHHHHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCC
Confidence 112 256555 4444 35888665543 289976 77889999999887654
No 217
>smart00642 Aamy Alpha-amylase domain.
Probab=85.84 E-value=2 Score=36.61 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 025344 106 YVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~-----------------i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (254)
-+.+++++||++|.++-=+-. + +.++..++|+.++++|++|+..+-..+
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 355778899999988642211 1 237899999999999999999988753
No 218
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.70 E-value=7.9 Score=34.60 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 025344 72 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
-.+-++.|++++|.+.|| |.-|+ ..+.++|++.|-+-...... -..+|+.++. ++|.
T Consensus 97 ~~~vi~~a~~~~i~~iPG~~TptEi-------------~~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~----p~p~ 155 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPGVSTPSEL-------------MLGMELGLRTFKFFPAEASG----GVKMLKALAG----PFPD 155 (212)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHH-------------HHHHHCCCCEEEEccchhcc----CHHHHHHHhc----cCCC
Confidence 346677777777777777 56663 23478999999994433221 1456666655 3443
Q ss_pred eeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 150 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 150 ~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
+... .+| + ++ .+.+...|+||+..+.. +.-+++.+
T Consensus 156 ~~~~----ptG--G-------V~---------------~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 156 VRFC----PTG--G-------IS---------------PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred CeEE----EeC--C-------CC---------------HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 3331 111 1 11 57889999999666666 66677543
No 219
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.70 E-value=5.7 Score=36.70 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+-++.+.+.+.|+++|||+=|+-.. .++.-.++++.+++. +..-+.+|-
T Consensus 114 ~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl--------------- 175 (299)
T cd02940 114 DWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKL--------------- 175 (299)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEEC---------------
Confidence 45555666667799999998887543 345666778887763 111255652
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +..++.+.++...++||+.|++
T Consensus 176 --~~---------~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 176 --TP---------NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred --CC---------CchhHHHHHHHHHHcCCCEEEE
Confidence 11 2345677778889999999973
No 220
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=85.69 E-value=11 Score=37.82 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=90.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
.+-+.|..+| ||.+=.||-.+.=-+.+.+++..+..+ +..++ .|. .-.+..++.-++..+..+.+.|-+.
T Consensus 27 ~ia~~L~~~G--V~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~--al~----r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 27 QIALALERLG--VDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVC--GLA----RCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred HHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEE--EEc----CCCHHhHHHHHHhccccCCCEEEEE
Confidence 4456677777 899999886543333344433333221 22222 121 1112245555555566688888887
Q ss_pred CCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 122 VGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 122 dGti~--------i~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
-.+-+ .+.++ -.+.|+.+++.|+. .+|+-.+.. + .|++.+++
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~~------------------r------~d~~~l~~ 150 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDAG------------------R------TEIPFLAR 150 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCCC------------------C------CCHHHHHH
Confidence 66633 23333 23688899998875 344442110 1 15899999
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.++...++||+.| .++|..|-..++.+.++++.+
T Consensus 151 ~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 184 (494)
T TIGR00973 151 IVEAAINAGATTI-----NIPDTVGYALPAEYGNLIKGL 184 (494)
T ss_pred HHHHHHHcCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999999999865 479999999999888888665
No 221
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=85.50 E-value=10 Score=35.26 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc--cccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG--AYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~--~~~~~~~~~~~~ 180 (254)
+.+..|-+.||+.|=+..-..+..+ +.-.++++.++..|..|--|+|.- + | .+|...+ ..+
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~-g----g-~ed~~~g~~~~~--------- 152 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTL-G----G-IEDGVDEKEAEL--------- 152 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCC-c----C-cccccccccccc---------
Confidence 4666777889999999877654432 123366677788898888888872 1 1 1221100 111
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEe-c--ccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLe-AGA~~ViiE-a--rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.| .++++++.+ .|+|++-+= + -|+|.....+..+.+.+|-+.++
T Consensus 153 -t~----~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 153 -AD----PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred -CC----HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 24 445566665 799998864 2 38898888999999999988765
No 222
>PRK08508 biotin synthase; Provisional
Probab=85.49 E-value=19 Score=33.04 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhC--Ccee--cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHH
Q 025344 70 PFIEEVVKRAHQH--DVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYV 136 (254)
Q Consensus 70 ~~l~eKi~l~~~~--gV~v--~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI 136 (254)
+.+.+-++..|++ ++.+ +.|-. -++-++.+|+.|.+.+-++..|- .-+-+++.+.|
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~-----------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i 143 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTA-----------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTC 143 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCC-----------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHH
Confidence 4566777777776 4544 22322 36778888999999887654332 24457888899
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+.+++.|+++.+ |.-.+.. ++.+++++.+..--+-+.+.|-+-
T Consensus 144 ~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l~~lr~L~~~svpl~ 186 (279)
T PRK08508 144 ENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFLKSLASLSPHSTPIN 186 (279)
T ss_pred HHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHHHHHHcCCCCEEeeC
Confidence 999999988777 4433321 147888888887778888866553
No 223
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=85.39 E-value=1.6 Score=40.95 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHH
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKS 141 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~ 141 (254)
..-++++.+.+.|.++||||.|..+ ++......+.+.+++
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~ 287 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ 287 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHh
Confidence 3446666777889999999988542 223334456666666
No 224
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=85.21 E-value=7.5 Score=36.22 Aligned_cols=130 Identities=12% Similarity=0.034 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHHHHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHHH
Q 025344 72 IEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFKEYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRLV 139 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~l---G---F~~IEISdGti~i~~~~r~~lI~~~ 139 (254)
+++-+++++++|.. +.++ | .|-+-.-.++.+.++++.+.+. | .+.|-++|-.--..+.+-.++|+.+
T Consensus 122 ~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l 200 (284)
T cd07942 122 AVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWF 200 (284)
T ss_pred HHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHH
Confidence 66778899999864 2111 1 2333333445788888888877 5 4488899998888888888999988
Q ss_pred HHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCc
Q 025344 140 KSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL 216 (254)
Q Consensus 140 ~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~ 216 (254)
++. +-....+++. |+-.|...-+..+-..++|||+.| ++- |+=...||.
T Consensus 201 ~~~~~~~~~~~~~~--------------------------H~Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN~ 252 (284)
T cd07942 201 CRNLSRRESVIISL--------------------------HPHNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGNV 252 (284)
T ss_pred HHhcCCCCCceEEE--------------------------EecCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccch
Confidence 763 1000112232 333456667888899999999985 554 775559999
Q ss_pred cHHHHHHHHhccCC
Q 025344 217 RADIIAKVIGRLGL 230 (254)
Q Consensus 217 r~d~i~~ii~~l~~ 230 (254)
-++.+-..+...+.
T Consensus 253 ~~E~lv~~l~~~g~ 266 (284)
T cd07942 253 DLVTLALNLYSQGV 266 (284)
T ss_pred hHHHHHHHHHhcCC
Confidence 99888777766554
No 225
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.10 E-value=2 Score=38.79 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=57.0
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 75 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
-++...+++| .|.-+.=.|. .-+..+.+.+-|+++|||.--| ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~~--------a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVEV--------AKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHHH--------HHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 4444543333 3455678899999999997644 334566666654 34443
Q ss_pred cCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 154 ~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
++.--+|+ |-.++ .++++..++|||++++-=+
T Consensus 68 ~p~~~vGa------GTVl~---------------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV------GSIVD---------------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee------EeCcC---------------HHHHHHHHHcCCCEEECCC
Confidence 33222332 12233 7888999999999998644
No 226
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=85.08 E-value=6.2 Score=35.10 Aligned_cols=89 Identities=18% Similarity=0.354 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.++++|+++.. .+.-. -.+.+ .|++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~--~nl~s-~d~~--------- 77 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYL--INLAS-PDKE--------- 77 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCce--ecCCC-CCHH---------
Confidence 467788899999999999976554 46778888888889999987532 11100 01111 1111
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
....+.+.+.+.++.+-+.||..|.+.+
T Consensus 78 ---~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 78 ---KVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 0112355566666666677999988854
No 227
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.01 E-value=15 Score=35.42 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred cCcccccCChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 025344 60 SGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (254)
Q Consensus 60 g~GT~~l~~~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (254)
+.|......++.+.+.++..++. ++++..= + -+...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-------p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-------PNITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-------CCcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 34555667788899999998875 4544421 1 12124667778888999999997776654
No 228
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=84.87 E-value=5.4 Score=35.78 Aligned_cols=88 Identities=17% Similarity=0.396 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+++-++.++++||+.|||+-+.. ..+.++..++.+.++++ |+.+.. .+.-. . ... ..|+.
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~-~~~-~~~~~-------- 78 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-I-NLA-SPDKE-------- 78 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-e-ccC-CCCHH--------
Confidence 678888888889998888864432 12456676777777777 444322 11100 0 000 00100
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
......+.+.+.++.+-+.||..|++-
T Consensus 79 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 79 ----KREKSIERLKDEIERCEELGIRLLVFH 105 (279)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 111235556666666667788888773
No 229
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=84.86 E-value=1.7 Score=41.99 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=100.0
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecC-Cc
Q 025344 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (254)
Q Consensus 17 R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~----ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~-Gt 90 (254)
|..|....++|.|.+-.+.+ .++... ||=|.+- +-....+++.+.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~in~-------TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNINY-------TNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecCCc-------chhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 34666778999999888733 344433 3444444 3335567778889999999999999 4543 44
Q ss_pred HHHHHHHhCCchHHHHHHHHH-------HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcc
Q 025344 91 WAEHLIRNGPSAFKEYVEDCK-------QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDR 163 (254)
Q Consensus 91 l~E~a~~qg~~~~~~yl~~~k-------~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~ 163 (254)
.--..-. .-+.+.++..| -.+|+..||.--+.......+ +.++++++.|+-..|+.|-- +- .
T Consensus 116 ~~p~~~~---~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~ae-----il--~ 184 (370)
T COG1060 116 EHPELSL---EYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAE-----IL--S 184 (370)
T ss_pred cCCCcch---HHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCccee-----ec--h
Confidence 2110000 02333334444 488998888876665555544 66788889999999988863 31 1
Q ss_pred ccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 164 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 164 d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
|.. .+...|. ..++++|++.++..-++|-..+
T Consensus 185 e~v-r~~~~p~------K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 185 EEV-RKIHCPP------KKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred HHH-HHhhCCC------CCCHHHHHHHHHHHHHcCCCcc
Confidence 111 0112232 3479999999999999997654
No 230
>PRK15108 biotin synthase; Provisional
Probab=84.84 E-value=6.6 Score=37.30 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHcC
Q 025344 183 DVDLLIRRAERCLEAG 198 (254)
Q Consensus 183 d~~~~i~~~~~dLeAG 198 (254)
+.+++++.++...++|
T Consensus 169 ~~~~rl~~i~~a~~~G 184 (345)
T PRK15108 169 TYQERLDTLEKVRDAG 184 (345)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3455555555555555
No 231
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.83 E-value=9.2 Score=35.39 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHHhhcccccEEeecCcccccCCh--hHHHHHHHHHHhC----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQH----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~--~~l~eKi~l~~~~----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+.|++.+| ||.+=+|+ .++-|+ +.+++..+...-. ++.+. .| ..+ +.-++.+.+.|.+
T Consensus 25 ~~~L~~~~G--v~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~--a~-----~~~----~~~~~~A~~~g~~ 89 (280)
T cd07945 25 AKILLQELK--VDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVL--GF-----VDG----DKSVDWIKSAGAK 89 (280)
T ss_pred HHHHHHHhC--CCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEE--Ee-----cCc----HHHHHHHHHCCCC
Confidence 344457777 88888884 334442 2344444432211 22221 12 122 3458889999999
Q ss_pred EEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGt------------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-|+-.+ .+=..+.-.++|+.+++.|++| .++..+ ++ + |++ .++
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d----~~---~--------~~r------~~~ 146 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED----WS---N--------GMR------DSP 146 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe----CC---C--------CCc------CCH
Confidence 99987532 1222223456689999999763 455532 10 0 111 158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.+++..++||+.| .++|..|-..+..+.++++.+
T Consensus 147 ~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRI-----MLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHHHH
Confidence 899999999999999976 468889999988888888665
No 232
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=84.64 E-value=2.5 Score=36.86 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=74.1
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHH-HHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHL-IRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a-~~qg~~~~~~yl~~~k~lGF~ 116 (254)
+...++.+++.+-+| ++-+. ++++..++.-.+..+..++.+.. ++|---. -..- ++.+ .++|-++|-|
T Consensus 15 t~~~i~~~~~~a~~~------~~~av-~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~--k~~e-ve~A~~~GAd 84 (203)
T cd00959 15 TEEDIRKLCDEAKEY------GFAAV-CVNPCFVPLAREALKGSGVKVCTVIGFPLGATTTEV--KVAE-AREAIADGAD 84 (203)
T ss_pred CHHHHHHHHHHHHHc------CCCEE-EEcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHH--HHHH-HHHHHHcCCC
Confidence 667888888888763 33333 34455677766677777777665 3321111 0110 2333 7788999999
Q ss_pred EEEecCCcccCCh---hHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 117 TIELNVGSLEIPE---ETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 117 ~IEISdGti~i~~---~~r~~lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.|++.-..-.+.. +.-.+-|..+.+. | ++|+-|.+. + +.+++..
T Consensus 85 evdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~------------------l-----------~~~~i~~ 135 (203)
T cd00959 85 EIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL------------------L-----------TDEEIIK 135 (203)
T ss_pred EEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC------------------C-----------CHHHHHH
Confidence 9999654433311 2122333333332 2 333333332 1 3677888
Q ss_pred HHHHHHHcCCcEEEEe
Q 025344 190 RAERCLEAGADMIMID 205 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiE 205 (254)
-.+-..++|||+|=+-
T Consensus 136 a~ria~e~GaD~IKTs 151 (203)
T cd00959 136 ACEIAIEAGADFIKTS 151 (203)
T ss_pred HHHHHHHhCCCEEEcC
Confidence 8999999999998775
No 233
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=84.61 E-value=7 Score=37.42 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
+.....+...+.+||+-+|||-- -++|..-.+..+.++++++++
T Consensus 277 ~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 277 DLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred cchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 34466788999999999999983 679999999999999998765
No 234
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=84.51 E-value=5.2 Score=38.64 Aligned_cols=74 Identities=27% Similarity=0.357 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+.+|.+.+++.|+++|||+=++-. -.++.-.++++.+++.- -+| +.+|-
T Consensus 114 ~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~P-v~vKl--------------- 175 (420)
T PRK08318 114 EWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLP-VIVKL--------------- 175 (420)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCc-EEEEc---------------
Confidence 5778888889999999999977643 24556678888887751 134 55552
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| +...+.+.++...++||+-|++
T Consensus 176 --~p---------~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 176 --TP---------NITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred --CC---------CcccHHHHHHHHHHCCCCEEEE
Confidence 11 1233566777788999999983
No 235
>PRK15452 putative protease; Provisional
Probab=84.41 E-value=20 Score=35.51 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=59.3
Q ss_pred chhHHHHHHHhhcccccEEeecCcccc------cCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~ 110 (254)
.+..++..++.- .|-+=+|+.... -+..+.|++-++++|++|+.+|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 455666666554 455555543222 334466999999999999988763 332211 112 688889999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 025344 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (254)
.++|+|+|=|+| ..+++.+++.
T Consensus 86 ~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 86 IAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred HhCCCCEEEEcC----------HHHHHHHHHh
Confidence 999999999998 4566777775
No 236
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=84.32 E-value=16 Score=34.22 Aligned_cols=165 Identities=13% Similarity=0.209 Sum_probs=102.8
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--H---HH----HHH--HhCCc-----
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AE----HLI--RNGPS----- 101 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l---~E----~a~--~qg~~----- 101 (254)
.++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + ++ .+. .+.-+
T Consensus 5 ~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV 80 (286)
T PRK08610 5 SMKEMLIDAKEN----GYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPV 80 (286)
T ss_pred cHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCE
Confidence 456666655432 456777778888888888888887776442 221 1 12 111 11100
Q ss_pred -------hHHHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--ccc
Q 025344 102 -------AFKEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GAY 170 (254)
Q Consensus 102 -------~~~~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~~ 170 (254)
.=-+.+..|-++||+.|=+....+++.+--+ .++++.|...|.-|--|+|.=-+ ..|... ...
T Consensus 81 ~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~~~~ 154 (286)
T PRK08610 81 AIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG------QEDDVVADGII 154 (286)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCCCCcccc
Confidence 0135567788999999999766655443322 37888999999999999998421 112100 011
Q ss_pred cccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccCC
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~~ 230 (254)
+| ||+ +++++++ -|+|.+-|== -|+|...-+++-+.+.+|-+.+++
T Consensus 155 yT----------~pe----ea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~v 204 (286)
T PRK08610 155 YA----------DPK----ECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGL 204 (286)
T ss_pred cC----------CHH----HHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCC
Confidence 22 454 4555554 4888765543 299998889999999999887664
No 237
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=84.06 E-value=2.9 Score=29.74 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347999999999999999999997622222 3445566778999887
No 238
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=84.03 E-value=11 Score=33.78 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=77.5
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC------Cc-HHHHHHHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GD-WAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~------Gt-l~E~a~~qg~~~~~~yl~~~k 111 (254)
....++.+.+.|-+| ++.+-.++|. .++.--++++..+|.+++ |. ..|.-+.+ .+++-
T Consensus 16 t~~~i~~lc~~A~~~------~~~avcv~p~-~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E--------~~~Av 80 (211)
T TIGR00126 16 TEEDIITLCAQAKTY------KFAAVCVNPS-YVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYE--------TKEAI 80 (211)
T ss_pred CHHHHHHHHHHHHhh------CCcEEEeCHH-HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHH--------HHHHH
Confidence 557888888888877 7777777766 577777777777887753 42 44443333 25678
Q ss_pred HcCCCEEEecCCcccCChhHHHH---HHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 112 QVGFDTIELNVGSLEIPEETLLR---YVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~---lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++|-|.|.+--..-.+-..++.. -|+.+++. | +||+-|.+. + +.
T Consensus 81 ~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~------------------L-----------~~ 131 (211)
T TIGR00126 81 KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL------------------L-----------TD 131 (211)
T ss_pred HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC------------------C-----------CH
Confidence 89999998865544333322222 22323321 3 344444333 2 24
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 025344 185 DLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE 205 (254)
++++.-.+-..++|||+|=+=
T Consensus 132 ~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeC
Confidence 678888999999999998663
No 239
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.00 E-value=16 Score=32.80 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=69.7
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec---------CCcHHH
Q 025344 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAE 93 (254)
Q Consensus 23 ~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~---------~Gtl~E 93 (254)
..++....|=|+ . .....+.+|+...+. .-.||.++.+++.+++-.+.+-+ .|.++ +-+|.|
T Consensus 74 ~~~~pi~vGGGI--r-s~e~v~~~l~~Ga~k-----vvigt~a~~~~~~l~~~~~~fg~-~ivvslD~~~g~v~~~gw~~ 144 (234)
T PRK13587 74 LTTKDIEVGGGI--R-TKSQIMDYFAAGINY-----CIVGTKGIQDTDWLKEMAHTFPG-RIYLSVDAYGEDIKVNGWEE 144 (234)
T ss_pred hcCCeEEEcCCc--C-CHHHHHHHHHCCCCE-----EEECchHhcCHHHHHHHHHHcCC-CEEEEEEeeCCEEEecCCcc
Confidence 345666777676 3 456666688765554 45799999999999988777632 23332 324544
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHH-cCCcccceeee
Q 025344 94 HLIRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKS-AGLKAKPKFAV 152 (254)
Q Consensus 94 ~a~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~-~G~~v~~E~g~ 152 (254)
. ..-...++++++.++|+..|=+. |||..=++-+ +++.+.+ .+..++..-|+
T Consensus 145 ~----~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~---li~~l~~~~~ipvi~~GGi 201 (234)
T PRK13587 145 D----TELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFE---LTGQLVKATTIPVIASGGI 201 (234)
T ss_pred c----CCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHH---HHHHHHHhCCCCEEEeCCC
Confidence 2 12257999999999998865433 5666555544 3444433 23444444444
No 240
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=83.91 E-value=15 Score=32.92 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=68.2
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCce----ecCC-----cHHHHH
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTG-----DWAEHL 95 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~----v~~G-----tl~E~a 95 (254)
++....|=|+ . .+..++.+|+.-.+ |.+.||+++.+++.+++-++.+.+. |. +..| ||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4556677776 3 55777777776444 7899999999999999998888654 32 2112 4543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHH
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~i~~~~r~~lI~~~~~ 141 (254)
... ...++.+.+.+.|++.|=+-+= +..=+ + .++|+.+++
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~ 187 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCA 187 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHh
Confidence 222 6788999999999998877543 33322 2 467777776
No 241
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=83.84 E-value=1.1 Score=41.49 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=53.8
Q ss_pred chhHHHHHHHhhcccccEEee---cCccc----ccCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKF---SGGSH----SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKf---g~GT~----~l~~~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~ 109 (254)
.+..++..++..+.|---.|+ ..-|- .+|+.+.|++.-++||+|||+++- |. ++|.+...+ ..+.+|.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 678999999998874444443 22222 278888999999999999999999 76 999885544 2345444
Q ss_pred HHHcCCCEEEecC
Q 025344 110 CKQVGFDTIELNV 122 (254)
Q Consensus 110 ~k~lGF~~IEISd 122 (254)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
No 242
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.59 E-value=29 Score=32.61 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=44.0
Q ss_pred hHHHHHHHhhccc-ccEEeecCcccccCC-------hhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMP-------KPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~~l~~-------~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~ 109 (254)
..+.|+.+.+-++ .|++=+-.++....+ ++.+.+.++-.++. ++++.. ... .+.+.+..+.
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~--------~~~~~~~a~~ 183 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF--------FSALAHMAKQ 183 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC--------ccCHHHHHHH
Confidence 3444444443332 566666555422211 12345555555543 444432 111 1257788888
Q ss_pred HHHcCCCEEEecCCcccC
Q 025344 110 CKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i 127 (254)
+.+.|.++|-+++.+..+
T Consensus 184 l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 184 LDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHcCCCeEEEEcCcCCC
Confidence 999999999999987443
No 243
>PRK08445 hypothetical protein; Provisional
Probab=83.47 E-value=27 Score=33.27 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=72.8
Q ss_pred hhcccccEEeecCcccccCChhHHHHHHHHHHhCC--ceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-----EEE
Q 025344 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIE 119 (254)
Q Consensus 49 ~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g--V~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~-----~IE 119 (254)
......+-+=+.+|-..-++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++.+|+.|.+ .+|
T Consensus 85 a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE 164 (348)
T PRK08445 85 LLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAE 164 (348)
T ss_pred HHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCcee
Confidence 33445677777888888888888999999888875 54432 1223434333312458999999999998 278
Q ss_pred ecCCc----c---cCChhHHHHHHHHHHHcCCcccce
Q 025344 120 LNVGS----L---EIPEETLLRYVRLVKSAGLKAKPK 149 (254)
Q Consensus 120 ISdGt----i---~i~~~~r~~lI~~~~~~G~~v~~E 149 (254)
+++-. + ..+.++|.+.|+.+++.|+++-+=
T Consensus 165 ~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg 201 (348)
T PRK08445 165 ILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTAT 201 (348)
T ss_pred eCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeE
Confidence 66642 2 578889999999999999998773
No 244
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=83.46 E-value=12 Score=33.57 Aligned_cols=124 Identities=12% Similarity=0.165 Sum_probs=75.4
Q ss_pred hHHHHHHHhhcc-----cccEEeecCcccccCChhHHHHHHHHHHhCCce---ec-C-CcHHHHHHHhCCch-----HHH
Q 025344 41 NVLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-T-GDWAEHLIRNGPSA-----FKE 105 (254)
Q Consensus 41 ~~~~DlLe~ag~-----yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~---v~-~-Gtl~E~a~~qg~~~-----~~~ 105 (254)
..|+|+|+.+.+ +|+ +|-+-+. .-++...++..+++++++|.. +. . -.....+-...|+. ...
T Consensus 114 PtL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~ 191 (252)
T cd08574 114 PSLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKL 191 (252)
T ss_pred CCHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeecccc
Confidence 478888887754 233 4743321 123345778899999999862 21 2 12233333333321 123
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
+....+++|++.+-++...++ .++|+.++++|++|.+ .++. |
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~-WTVn-----------------------------~-- 233 (252)
T cd08574 192 PVESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL-YVVN-----------------------------E-- 233 (252)
T ss_pred chHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE-EccC-----------------------------C--
Confidence 344556788887766655442 3689999999888666 4441 1
Q ss_pred HHHHHHHHHHHcCCcEEEEec
Q 025344 186 LLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 186 ~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++.++.|+|-||..+
T Consensus 234 --~~~~~~l~~~GVdgIiTD~ 252 (252)
T cd08574 234 --PWLYSLLWCSGVQSVTTNA 252 (252)
T ss_pred --HHHHHHHHHcCCCEEecCc
Confidence 4567888999999999764
No 245
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.45 E-value=20 Score=33.08 Aligned_cols=149 Identities=16% Similarity=0.255 Sum_probs=91.1
Q ss_pred chhHHHHHHHhhcc-cccEEeecCccc-ccCChhHHHHHH-----------------HHHH--hCCceecCCcHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEVV-----------------KRAH--QHDVYVSTGDWAEHLIR 97 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~-~l~~~~~l~eKi-----------------~l~~--~~gV~v~~Gtl~E~a~~ 97 (254)
.+..+.+++...-+ -+|++=+|+=.| .+.+-.++++-- +-.| ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 34666666666555 899999997544 223333333322 2222 23455555577888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.| +++|++.|++.|++.+=| -+||.++...+.+.++++|+..++=+...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------------------------ 150 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------------------------ 150 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT------------------------
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC------------------------
Confidence 85 999999999999999877 46888999999999999999877744431
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccHHHHHHHHhc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~i~~ii~~ 227 (254)
+++++|+.+. +.+..+|=.=++ |++-....+.. .+.+.+++
T Consensus 151 -----t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~~ 192 (259)
T PF00290_consen 151 -----TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIKR 192 (259)
T ss_dssp -----S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHHH
T ss_pred -----CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHHH
Confidence 2455555553 344556655555 77666655443 34444433
No 246
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=83.41 E-value=28 Score=32.89 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 025344 183 DVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~Vii 204 (254)
++++.++.++..-++|+|+|-|
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888898888899999988
No 247
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.25 E-value=16 Score=34.35 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcc-cceeeeecCCCCCCCcccccccccccc
Q 025344 108 EDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKA-KPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v-~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
+.+.+.||+.|||+-|+- .=..+.-.++++.+++. ... +| +++|... |
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~-~~~~~p-VsvKiR~---g------------- 143 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA-VPAHLP-VTVKVRL---G------------- 143 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh-cCCCcc-eEEEEEC---C-------------
Confidence 345778999999998772 12333444556665553 100 22 5665321 1
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc-cCCC-ccHHHHHHHHhccC
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADS-LRADIIAKVIGRLG 229 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~-~r~d~i~~ii~~l~ 229 (254)
| .+.++.++.++..-++|++.|.|=+|--.. -.|. .+.+.+.++-+.++
T Consensus 144 --~-----~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~ 194 (312)
T PRK10550 144 --W-----DSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT 194 (312)
T ss_pred --C-----CCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC
Confidence 1 023445788888889999999999982111 0122 24566666665543
No 248
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=82.95 E-value=34 Score=33.96 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=74.9
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCC-ceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (254)
+.++-|.-.+..+ +++.+++..+.+.+.| +.+.-+ +=.... .. =++.++.+++.|+..|.+.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~----d~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VR----DADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cC----CHHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 5556666665544 3445666666666655 322211 111111 11 15788999999999999844433
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.++-.+.|+.++++|+.+...|=+ +. + + ++.+++.+.++..++.+.+
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~--G~--P---~------------------et~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT--GF--E---N------------------ETDETFEETYRQLLDWDPD 368 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE--EC--C---C------------------CCHHHHHHHHHHHHHcCCC
Confidence 245677789999999999987544333 21 0 1 1477888888888889988
Q ss_pred EEEE
Q 025344 201 MIMI 204 (254)
Q Consensus 201 ~Vii 204 (254)
.+.+
T Consensus 369 ~~~~ 372 (497)
T TIGR02026 369 QANW 372 (497)
T ss_pred ceEE
Confidence 7665
No 249
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=82.80 E-value=24 Score=33.12 Aligned_cols=165 Identities=14% Similarity=0.200 Sum_probs=103.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhCC----
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNGP---- 100 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l----------~E~a~~qg~---- 100 (254)
..+.++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ + +..+..+-.
T Consensus 4 v~~~~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VP 79 (285)
T PRK07709 4 VSMKEMLNKALEG----KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVP 79 (285)
T ss_pred CcHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCc
Confidence 3566666665443 567777778888888888888877776432 232 1 111111110
Q ss_pred -------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--cc
Q 025344 101 -------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF--GA 169 (254)
Q Consensus 101 -------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~--~~ 169 (254)
..=-+.+..|-++||+.|=+.....++.+-- =.++++.|...|.-|--|+|.=-+ ..|... ..
T Consensus 80 V~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg------~ed~~~~~~~ 153 (285)
T PRK07709 80 VAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG------QEDDVIAEGV 153 (285)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCcccccc
Confidence 0012566788899999999976665444322 237788889999999999998321 122100 01
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.+| ||++ ++++++ -|+|.+-+== -|.|...-+++.+.+++|-+.++
T Consensus 154 ~yT----------~pee----A~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~ 203 (285)
T PRK07709 154 IYA----------DPAE----CKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG 203 (285)
T ss_pred cCC----------CHHH----HHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC
Confidence 122 5554 445553 4999876632 28999888999999999988775
No 250
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=82.80 E-value=3.4 Score=39.76 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=56.9
Q ss_pred CchHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISd---Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+..+.+-++++-+-|+|.|=... ..-.+|.++|.++++.+.+. +..|-|.+-.. .
T Consensus 145 ~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~y--------------~----- 202 (367)
T cd08205 145 PEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTLY--------------A----- 202 (367)
T ss_pred HHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcceE--------------E-----
Confidence 33566666777778999985433 33478999999999988873 22233332110 0
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.-.+.+.++++++++...++||+.||+--
T Consensus 203 -~nit~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 203 -PNITGDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred -EEcCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 01112469999999999999999999976
No 251
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.77 E-value=8.1 Score=34.48 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 75 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 75 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
.++...+++| .|.-+.=.|.+ -+-.+.+.+-|+..+||.- ......+.|+++++. +.-.|++-
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a--------~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~~-~~~~p~~~-- 69 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEA--------LKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVEL-YKDDPEVL-- 69 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHH--------HHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHHH-cCCCCCeE--
Confidence 3577788888 44446544443 3446778899999999865 446677899998873 11111111
Q ss_pred cCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 154 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 154 ~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+|+ |-.++ .+++++.++|||++++-=+
T Consensus 70 -----vGa------GTV~~---------------~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 70 -----IGA------GTVLD---------------AVTARLAILAGAQFIVSPS 96 (213)
T ss_pred -----Eee------eeCCC---------------HHHHHHHHHcCCCEEECCC
Confidence 221 11133 7789999999999999433
No 252
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=82.70 E-value=4.3 Score=36.14 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 025344 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162 (254)
Q Consensus 83 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~ 162 (254)
||.++.| |-.++-. -+.++++.||+.|+...=.++|+. |.+...+++..+-- .-+-+|..
T Consensus 41 GVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~------~l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDE------VLFDLKIM------- 100 (213)
T ss_pred EEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCE------EEEeeccC-------
Confidence 6666666 3333222 468899999999999999999986 44555555443221 11233311
Q ss_pred cccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccCCCce
Q 025344 163 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 233 (254)
Q Consensus 163 ~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~~~kl 233 (254)
|++.-..++. .+.+.+++.++.-.++|++. |-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~tG--------~~~~~il~nl~~l~~~g~~v---~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVVK--------MNLPRVLENLRLLVSEGVNV---IPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHHC--------CCHHHHHHHHHHHHhCCCcE---EEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 1110011211 24677888899999999863 446 5555544322 24455555665543
No 253
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=82.69 E-value=10 Score=34.91 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=89.6
Q ss_pred HHHHHHHhhcccccEEeecCccccc-CC----hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSL-MP----KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l-~~----~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+-+.|..+| ||.+=+|+..+.- .| .+.+.+.+.. ..++.+ .+|. . ..+ =++.+.+.|.+
T Consensus 24 ~i~~~L~~~G--v~~IEvGs~~~~~~~p~~~d~~~~~~~l~~--~~~~~~--~~~~-----~---~~~-dv~~A~~~g~~ 88 (274)
T cd07938 24 ELIDALSAAG--LRRIEVTSFVSPKWVPQMADAEEVLAGLPR--RPGVRY--SALV-----P---NLR-GAERALAAGVD 88 (274)
T ss_pred HHHHHHHHcC--CCEEEeCCCCCcccccccCCHHHHHhhccc--CCCCEE--EEEC-----C---CHH-HHHHHHHcCcC
Confidence 4455666777 9999999654443 22 2222222221 112222 2232 1 222 37888889999
Q ss_pred EEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 117 TIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 117 ~IEISdGti~--------i~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. + .+ +..++
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~----~~---------------~~~~~ 148 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-P----YE---------------GEVPP 148 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C----CC---------------CCCCH
Confidence 9888755433 12 2445567999999999875433332211 1 10 01158
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.+++.++...++||+.|- +.|..|...+..+.++++.+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 149 ERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred HHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 9999999999999998664 67888888888888777654
No 254
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=82.52 E-value=18 Score=32.61 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. +++-+..+ -|
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~-----------------------GG 82 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVG-----------------------GG 82 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEE-----------------------CC
Confidence 4556667777899999988876644 2455566788888773 11112111 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
..+ .+.+++.+++||+.|++ ++.... +.+++.++.++.|.+++++--+
T Consensus 83 i~s----~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 83 IKS----IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 122 67778889999999999 554444 3678899998888888887554
No 255
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.52 E-value=6.1 Score=33.04 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
|.+-+.-+|+.+|-= .+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gfe--Vi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGFN--VVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCCE--EEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 566777778777743 333442 112 56777788888875433 2222 111113667788888888844
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHcCCc
Q 025344 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
+=| =-|.+.+|.++.....+++++.||.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 434 7778889998888788888887754
No 256
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.49 E-value=34 Score=32.46 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+.++.++.++.--++|+|+|=|-+-......+.+..+.++.|-+.+
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~ 284 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF 284 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc
Confidence 5788888888888999999988332122222334445554444433
No 257
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=82.49 E-value=6.3 Score=39.20 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++.+|=|+|=+-...++ .++..++++.+++.||.++-|++-
T Consensus 125 I~ea~~~GADavLLI~~~L~--~~~l~~l~~~a~~lGl~~lvEvh~---------------------------------- 168 (454)
T PRK09427 125 IYLARYYGADAILLMLSVLD--DEQYRQLAAVAHSLNMGVLTEVSN---------------------------------- 168 (454)
T ss_pred HHHHHHcCCCchhHHHHhCC--HHHHHHHHHHHHHcCCcEEEEECC----------------------------------
Confidence 67899999999988776654 678889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT 238 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP 238 (254)
.+.+++.+++||..|-|..|.+-.- ++..+.-.+|+..+|.+.+ +-|.=
T Consensus 169 -~~El~~al~~~a~iiGiNnRdL~t~--~vd~~~~~~l~~~ip~~~~~vseSG 218 (454)
T PRK09427 169 -EEELERAIALGAKVIGINNRNLRDL--SIDLNRTRELAPLIPADVIVISESG 218 (454)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEeCC
Confidence 3456677999999999999976332 2445566677777775544 44543
No 258
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=82.45 E-value=3 Score=39.27 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 025344 100 PSAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
++...+-|+.+|.+||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 346788899999999999987 46777777 457789999999999999887775
No 259
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.43 E-value=10 Score=36.02 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHcCCcc----cceeeeecCCCCCCCccccccc
Q 025344 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSAGLKA----KPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~G~~v----~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
..++|.+.+++++ +|+||++-++-.. ..+.-.++++.+++. ... +| +.+|-
T Consensus 155 ~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~-~~~~~~~~P-V~vKl-------------- 218 (344)
T PRK05286 155 AVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA-QAELHGYVP-LLVKI-------------- 218 (344)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HhccccCCc-eEEEe--------------
Confidence 6788888888888 9999998655433 344555777777763 100 22 44542
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+|. + +.+++.+.++...++||+.|++=.+
T Consensus 219 ---sp~-~------~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 219 ---APD-L------SDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred ---CCC-C------CHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 211 1 3557888999999999999999875
No 260
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=82.30 E-value=16 Score=34.29 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=56.6
Q ss_pred HHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 108 EDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
+.+.+.||+.|||+=|+=. + .++.-.++++.+++. .. + -+++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~-pv~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-V-PVTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-C-ceEEEEEc---c--------------
Confidence 3445689999999999631 1 144455667766553 10 1 25555321 1
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccccCCCccHHHHHHHHhccC
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|. .+..+.++.++..-++|++.|.+-+| +.|. |....+.+.++.+.++
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~--G~a~~~~i~~ik~~~~ 194 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFN--GEAEYDSIRAVKQKVS 194 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccC--CCcChHHHHHHHHhcC
Confidence 10 01234577788888999999999998 3443 3334566666665443
No 261
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=82.26 E-value=13 Score=34.86 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=55.0
Q ss_pred eecCcccccCChhHHHHHHHHHHhC---CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 025344 58 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 127 (254)
Q Consensus 58 Kfg~GT~~l~~~~~l~eKi~l~~~~---gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---- 127 (254)
|-|.|++.+-..+.+.+.++-.++. +++|+- .||-+ .+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~------~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDS------GERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCC------chHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788888899999999998888874 354442 24411 1235688888999999999999887522
Q ss_pred ChhHHHHHHHHHHHc
Q 025344 128 PEETLLRYVRLVKSA 142 (254)
Q Consensus 128 ~~~~r~~lI~~~~~~ 142 (254)
+.-++ +.|+++++.
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 11133 778888884
No 262
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.21 E-value=37 Score=30.42 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccC-ChhHHHHHHHHHHhCCc-------------eecCCcHHHHHHHhCCchHHH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDV-------------YVSTGDWAEHLIRNGPSAFKE 105 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~-~~~~l~eKi~l~~~~gV-------------~v~~Gtl~E~a~~qg~~~~~~ 105 (254)
+..+.++++..-+-+|.+=+|.=.+-.. +-..+++..+.+.++|+ ++..=+.+-. + +. ..++
T Consensus 17 ~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~~ 92 (244)
T PRK13125 17 VESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLDN 92 (244)
T ss_pred HHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHHH
Confidence 3555555554333399999998555442 33445555544443333 2210011111 1 22 5889
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++.-
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999984433321 356679999999999998888776
No 263
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=82.19 E-value=2.6 Score=40.65 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCceecC--CcH--HH------------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--
Q 025344 72 IEEVVKRAHQHDVYVST--GDW--AE------------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI-- 127 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~--Gtl--~E------------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i-- 127 (254)
-++-+++||.+||.|-. |.. .| -.+.- .-++-.+.+++.|.|++=||-||.-=
T Consensus 125 Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T---~PeeA~~Fv~~TgvD~LAvaiGT~HG~Y 201 (347)
T PRK09196 125 TRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT---DPEEAADFVKKTQVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCC---CHHHHHHHHHHhCcCeEhhhhccccCCC
Confidence 47889999999997763 432 11 11112 35667777889999999999999721
Q ss_pred -----Ch--hHHHHHHHHHHHcCCcccceeeeecCCCCCCC---------ccccccccccccCCCccccccCHHHHHHHH
Q 025344 128 -----PE--ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS---------DRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 128 -----~~--~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~---------~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
|. .-..++++.+++. .+-.| =|.++.|.++. ++|=. +++=+| -+++
T Consensus 202 k~~~~p~~~~LdfdrL~eI~~~-v~~vP--LVLHGgSG~~~~~~~~~~~~g~~~~-~~~G~~--------------~e~i 263 (347)
T PRK09196 202 KFTRKPTGDVLAIDRIKEIHAR-LPNTH--LVMHGSSSVPQELLDIINEYGGDMP-ETYGVP--------------VEEI 263 (347)
T ss_pred CCCCCCChhhccHHHHHHHHhc-CCCCC--EEEeCCCCCCHHHHHHHHHhcCCcc-ccCCCC--------------HHHH
Confidence 21 1223344544442 10011 15555554410 00000 000001 4788
Q ss_pred HHHHHcCCcEEEEecc
Q 025344 192 ERCLEAGADMIMIDSD 207 (254)
Q Consensus 192 ~~dLeAGA~~ViiEar 207 (254)
++.++.|..+|=|-.+
T Consensus 264 ~~ai~~GI~KINi~Td 279 (347)
T PRK09196 264 QEGIKHGVRKVNIDTD 279 (347)
T ss_pred HHHHHCCCceEEeChH
Confidence 9999999999977764
No 264
>PRK05985 cytosine deaminase; Provisional
Probab=82.11 E-value=6.8 Score=37.02 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHcCC
Q 025344 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAGL 144 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G~ 144 (254)
+.|++.+++|++||+.+.. ...-+.. . ..+.++++.++++|+. .+-++=.+ -.++++++.++|+++++.|.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~ 266 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGV 266 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 6788888999999976632 1111111 1 1455677777888885 23333332 25677777899999999998
Q ss_pred cccce
Q 025344 145 KAKPK 149 (254)
Q Consensus 145 ~v~~E 149 (254)
.|.+.
T Consensus 267 ~v~~~ 271 (391)
T PRK05985 267 AIMTN 271 (391)
T ss_pred eEEEe
Confidence 87654
No 265
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=82.05 E-value=24 Score=28.16 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=87.6
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC--Ccee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
..+...+....++..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~ 100 (204)
T cd01335 33 ILDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLD 100 (204)
T ss_pred HHHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCc
Confidence 344455556677888889999988888 488999999888 5544 34 2222 1 5777888888999
Q ss_pred EEEecCCccc-----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 117 TIELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 117 ~IEISdGti~-----------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
.|.+|--+.+ .+.++..+.|+++++.|..+.+.+=.-.+. .+.+
T Consensus 101 ~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~-------------------------~~~~ 155 (204)
T cd01335 101 GVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGD-------------------------EDEE 155 (204)
T ss_pred eEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCC-------------------------ChhH
Confidence 9999877653 344778889999999888877766552111 0235
Q ss_pred HHHHHHHHHHHcC-CcEEEEec
Q 025344 186 LLIRRAERCLEAG-ADMIMIDS 206 (254)
Q Consensus 186 ~~i~~~~~dLeAG-A~~ViiEa 206 (254)
++++.++...+.+ ++.+.+..
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~ 177 (204)
T cd01335 156 DDLEELELLAEFRSPDRVSLFR 177 (204)
T ss_pred HHHHHHHHHHhhcCcchhhhhh
Confidence 5677777777776 55554443
No 266
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=81.93 E-value=2 Score=39.08 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVK 140 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt------i~i~~~~r~~lI~~~~ 140 (254)
+.+..-=++++.-++++.- + ||-. .+..+.+-++...+.|.-.|-|-|.- --+|.++-..=|+.++
T Consensus 56 e~~~~~~~I~~~~~iPv~vD~d~GyG~-----~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~ 130 (238)
T PF13714_consen 56 EMLAAVRRIARAVSIPVIVDADTGYGN-----DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAV 130 (238)
T ss_dssp HHHHHHHHHHHHSSSEEEEE-TTTSSS-----SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcEEEEcccccCc-----hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHH
Confidence 3444445566777888875 2 4422 02256667778889999999999881 1357887777777776
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHH
Q 025344 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI 220 (254)
Q Consensus 141 ~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~ 220 (254)
+.-= -+.|-+- . .-|. .+. .....++.|++++...+||||.|.+++- ...+.
T Consensus 131 ~a~~--~~~~~I~---A----RTDa----~~~-------~~~~~deaI~R~~aY~eAGAD~ifi~~~--------~~~~~ 182 (238)
T PF13714_consen 131 DARR--DPDFVII---A----RTDA----FLR-------AEEGLDEAIERAKAYAEAGADMIFIPGL--------QSEEE 182 (238)
T ss_dssp HHHS--STTSEEE---E----EECH----HCH-------HHHHHHHHHHHHHHHHHTT-SEEEETTS--------SSHHH
T ss_pred Hhcc--CCeEEEE---E----eccc----ccc-------CCCCHHHHHHHHHHHHHcCCCEEEeCCC--------CCHHH
Confidence 5200 0012220 0 0111 010 1235899999999999999999999975 34566
Q ss_pred HHHHHhccC-CCceEE
Q 025344 221 IAKVIGRLG-LEKTMF 235 (254)
Q Consensus 221 i~~ii~~l~-~~klif 235 (254)
++++.++++ +=+++.
T Consensus 183 i~~~~~~~~~Pl~v~~ 198 (238)
T PF13714_consen 183 IERIVKAVDGPLNVNP 198 (238)
T ss_dssp HHHHHHHHSSEEEEET
T ss_pred HHHHHHhcCCCEEEEc
Confidence 888888877 433333
No 267
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=81.92 E-value=6.9 Score=35.69 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++.-+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455566788999999999999999999999999999988776543311 11
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 025344 185 DLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE 205 (254)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 345688899999999973
No 268
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=81.91 E-value=13 Score=37.85 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+..+.-.+-|.|.+=+=|=+-.- .++..+++|+++.+.=|.+++ +|= -+-+.+|+. +.+++
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~-vGG-----GIr~~~d~~-~~~~~-------- 335 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLT-VGG-----GIRDFTDAN-GRYYS-------- 335 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEE-EcC-----Ccccccccc-ccccc--------
Confidence 34444457799988776655422 233348899999985443322 221 111112221 22222
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccc------cccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDV------CKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi------~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
.++.+++-|++||++|+|-+.-+ |.+.-...+++++++.+++|-.+|+.=-.
T Consensus 336 ------~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 336 ------SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred ------hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 27999999999999999988533 33345556899999999998776765433
No 269
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=81.88 E-value=18 Score=33.83 Aligned_cols=134 Identities=20% Similarity=0.337 Sum_probs=79.0
Q ss_pred hHHHHHHHhhccc-cc-EEe-ecCccc---ccCChhHHHHHHHHHHhCC-c-eecCCcHHHHHHHhCCch-HHHHHHHHH
Q 025344 41 NVLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCK 111 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID-~lK-fg~GT~---~l~~~~~l~eKi~l~~~~g-V-~v~~Gtl~E~a~~qg~~~-~~~yl~~~k 111 (254)
+.++.+++..+.. -+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.++
T Consensus 53 ~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~ 124 (313)
T TIGR01210 53 NQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELR 124 (313)
T ss_pred HHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHH
Confidence 3445555554432 11 235 533332 3567777888888888776 3 211111 1222 267888899
Q ss_pred HcCCC-EEEecCCcccCCh-------------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 112 QVGFD-TIELNVGSLEIPE-------------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 112 ~lGF~-~IEISdGti~i~~-------------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
+.|++ .|+| |.-+.++ ++-.+.++.++++|+.|..-|=...|. .++
T Consensus 125 ~aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G~P~--------------~se---- 184 (313)
T TIGR01210 125 KIGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFKPPF--------------LSE---- 184 (313)
T ss_pred HcCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCC--------------CCh----
Confidence 99987 4665 4444444 444578999999999987766553221 000
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++.+++++.++...+.+ +.|-+-.
T Consensus 185 ---~ea~ed~~~ti~~~~~l~-~~vs~~~ 209 (313)
T TIGR01210 185 ---KEAIADMISSIRKCIPVT-DTVSINP 209 (313)
T ss_pred ---hhhHHHHHHHHHHHHhcC-CcEEEEC
Confidence 024677888888888877 7666543
No 270
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.87 E-value=22 Score=31.35 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhCCc--eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV--~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (254)
+.+++|++.++++|+ .+|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 347788888888888 33446621 1 1223556777777532 321 2 3345555666666
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 140 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 140 ~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
++. ...++.++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 653 466777777731 3455566889999988744
No 271
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=81.86 E-value=8.3 Score=36.03 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+..-.+..|+-|-++|-+.-| ++..+.|+++.++|.-|.-.+|.--..-.. +|.+- -.-...+
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~-------~GGyk----vqGr~~~ 158 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQSVNW-------LGGYK----VQGRTEE 158 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhhhhc-------cCCee----eecCCHH
Confidence 444456678899999999999 778899999999999999999984221010 01111 0111234
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+.+++++.+++-=+|||..|.+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLEC 182 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEec
Confidence 688999999999999999999998
No 272
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=81.81 E-value=17 Score=32.44 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=72.0
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
.+.+.+.+.+.-. |++=+= +|.-.-| ..|.+.+...|++++.++- .|+=|... |.++|||
T Consensus 53 T~~ev~~l~~aGa---dIIAlD-aT~R~Rp-~~l~~li~~i~~~~~l~MADist~ee~~~-------------A~~~G~D 114 (192)
T PF04131_consen 53 TLKEVDALAEAGA---DIIALD-ATDRPRP-ETLEELIREIKEKYQLVMADISTLEEAIN-------------AAELGFD 114 (192)
T ss_dssp SHHHHHHHHHCT----SEEEEE--SSSS-S-S-HHHHHHHHHHCTSEEEEE-SSHHHHHH-------------HHHTT-S
T ss_pred CHHHHHHHHHcCC---CEEEEe-cCCCCCC-cCHHHHHHHHHHhCcEEeeecCCHHHHHH-------------HHHcCCC
Confidence 4566666666444 444443 4666777 6799999999999977776 46655443 3579999
Q ss_pred EEEec-CCcccC---ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 117 TIELN-VGSLEI---PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 117 ~IEIS-dGti~i---~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
.|=-- .|..+= ...+ .+||+++.+.+..|+-|=++. + -++++
T Consensus 115 ~I~TTLsGYT~~t~~~~pD-~~lv~~l~~~~~pvIaEGri~-----------------------------t----pe~a~ 160 (192)
T PF04131_consen 115 IIGTTLSGYTPYTKGDGPD-FELVRELVQADVPVIAEGRIH-----------------------------T----PEQAA 160 (192)
T ss_dssp EEE-TTTTSSTTSTTSSHH-HHHHHHHHHTTSEEEEESS-------------------------------S----HHHHH
T ss_pred EEEcccccCCCCCCCCCCC-HHHHHHHHhCCCcEeecCCCC-----------------------------C----HHHHH
Confidence 98531 111111 2233 488999888877777775551 1 46788
Q ss_pred HHHHcCCcEEEEec
Q 025344 193 RCLEAGADMIMIDS 206 (254)
Q Consensus 193 ~dLeAGA~~ViiEa 206 (254)
+.|++||+.|+|=+
T Consensus 161 ~al~~GA~aVVVGs 174 (192)
T PF04131_consen 161 KALELGAHAVVVGS 174 (192)
T ss_dssp HHHHTT-SEEEE-H
T ss_pred HHHhcCCeEEEECc
Confidence 99999999999854
No 273
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=81.78 E-value=2.5 Score=40.13 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHH---HHHHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 025344 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKE---YVEDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (254)
Q Consensus 70 ~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~---yl~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (254)
..+.|.|+-.|+. +|++++-.+.+ -| ...++ +.+.+.+.|+|.|+||.|+...+ +.-...+.
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~----~G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHP----GG-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCC----CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4566777666665 34555422222 12 13444 44555566999999999985421 22234566
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCCC
Q 025344 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADS 215 (254)
Q Consensus 137 ~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~ 215 (254)
+.+++. +++ +..-+| ... | .+.+++.|+.| ||+|++ +|++.-
T Consensus 268 ~~ik~~-------~~i--pVi~~G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ia---- 310 (337)
T PRK13523 268 EHIREH-------ANI--ATGAVG--------LIT-----------S----GAQAEEILQNNRADLIFI-GRELLR---- 310 (337)
T ss_pred HHHHhh-------cCC--cEEEeC--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHHHh----
Confidence 666653 222 110011 111 2 46688889988 899876 554332
Q ss_pred ccHHHHHHHHhccCCC
Q 025344 216 LRADIIAKVIGRLGLE 231 (254)
Q Consensus 216 ~r~d~i~~ii~~l~~~ 231 (254)
+++++.++.+.+..+
T Consensus 311 -dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 311 -NPYFPRIAAKELGFE 325 (337)
T ss_pred -CccHHHHHHHHcCCC
Confidence 356677777666543
No 274
>PRK10425 DNase TatD; Provisional
Probab=81.77 E-value=41 Score=30.63 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=101.3
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCC----hhHHHHHHHHHHhCCceecCC--c--HH-
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP----KPFIEEVVKRAHQHDVYVSTG--D--WA- 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~----~~~l~eKi~l~~~~gV~v~~G--t--l~- 92 (254)
+..|+.-++.+|. .+...+..++.+..|= .+..+.|-+.-+- .+.+.+..+++++..| +.-| | +.
T Consensus 25 ~~~gv~~~i~~~~----~~~~~~~~~~l~~~~~-~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~-vaIGEiGLDy~~ 98 (258)
T PRK10425 25 FAAGVNGMLITGT----NLRESQQAQKLARQYP-SCWSTAGVHPHDSSQWQAATEEAIIELAAQPEV-VAIGECGLDFNR 98 (258)
T ss_pred HHCCCCEEEEeCC----CHHHHHHHHHHHHhCC-CEEEEEEeCcCccccCCHHHHHHHHHhccCCCE-EEEeeeeecccc
Confidence 3458888999997 5678999999998885 4888888876442 3334444444443332 2224 3 22
Q ss_pred --H-HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 93 --E-HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 93 --E-~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
+ ...++. -|+..++.|++++-..|==|-+.. + ++++.+++..-+. + =++-...+ +
T Consensus 99 ~~~~~~~Q~~--vF~~ql~lA~~~~~Pv~iH~r~a~----~---~~l~iL~~~~~~~-~-~~i~H~fs-----G------ 156 (258)
T PRK10425 99 NFSTPEEQER--AFVAQLAIAAELNMPVFMHCRDAH----E---RFMALLEPWLDKL-P-GAVLHCFT-----G------ 156 (258)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHhCCCeEEEEeCch----H---HHHHHHHHhccCC-C-CeEEEecC-----C------
Confidence 1 112334 799999999999998875554332 3 3444444421011 1 12321111 1
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+.+++.++.|.+.=+- --++.. -+...+.++++.+|+++|+.|...|
T Consensus 157 -------------~----~~~~~~~l~~G~~~si~--g~i~~~---~~~~~~~~~~~~ipldrlLlETDaP 205 (258)
T PRK10425 157 -------------T----REEMQACLARGLYIGIT--GWVCDE---RRGLELRELLPLIPAERLLLETDAP 205 (258)
T ss_pred -------------C----HHHHHHHHHCCCEEEEC--ceeecc---cccHHHHHHHHhCChHHEEEeccCC
Confidence 1 66788889998776441 112211 1334677889999999999997655
No 275
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.73 E-value=36 Score=31.93 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI 127 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i 127 (254)
.+.++.+.|++.|.++|.+++.+..+
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~ 203 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQP 203 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCC
Confidence 35788889999999999999887544
No 276
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=81.49 E-value=7.5 Score=36.73 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhC--
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNG-- 99 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID-~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~-~qg-- 99 (254)
|.-+.-|-+.+-++..++++++....++. ...+ |.-..|..+-.++++.++++|| .++-| ++=+..+ .-|
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56667676532378889999998877721 1222 2334566666899999999999 78778 6755444 223
Q ss_pred --CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 100 --PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 100 --~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 1235556778888999854 555565566778888889999887654
No 277
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=81.45 E-value=17 Score=32.05 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=77.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CC-----cHHHH
Q 025344 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG-----DWAEH 94 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~G-----tl~E~ 94 (254)
.+++.+++=|+ . .+...+.+++.-.+.| -.||..+.+++.+++..+.+.+..|.++ .| ||.+.
T Consensus 75 ~~~~l~v~GGi--~-~~~~~~~~~~~Ga~~v-----~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~ 146 (241)
T PRK13585 75 VGVPVQLGGGI--R-SAEDAASLLDLGVDRV-----ILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEK 146 (241)
T ss_pred cCCcEEEcCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCccc
Confidence 35666666554 2 3455555666544544 3377777666666666666544333222 12 22211
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC----CcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccc
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV----GSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
. .....++.+.+.+.|++.|=+.+ |+..-+ -.++|+.+.+. .+.+...=|
T Consensus 147 ~----~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~---~~~~i~~i~~~~~iPvia~GG------------------ 201 (241)
T PRK13585 147 T----GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGV---NTEPVKELVDSVDIPVIASGG------------------ 201 (241)
T ss_pred C----CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCC---CHHHHHHHHHhCCCCEEEeCC------------------
Confidence 0 11567778888889999887743 333222 23456666552 111111111
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 215 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 215 (254)
+.++++ ++..+++||+.|++ ++.++.+.-.
T Consensus 202 -----------I~~~~d----i~~~~~~Ga~gv~v-gsa~~~~~~~ 231 (241)
T PRK13585 202 -----------VTTLDD----LRALKEAGAAGVVV-GSALYKGKFT 231 (241)
T ss_pred -----------CCCHHH----HHHHHHcCCCEEEE-EHHHhcCCcC
Confidence 123444 33457789999999 8878776554
No 278
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.37 E-value=10 Score=38.32 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 025344 73 EEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
.+-+++++++|..|.. .. ||. ++.-.++.+.++++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 4558899999998754 32 533 334556689999999999999999999988888888888999999874 22 1224
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHH
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 225 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii 225 (254)
++- |--|...-+-.....++|||+. ||+- |+=+..||.....+.--+
T Consensus 202 ~vH--------------------------~HND~GlAvANslaAv~AGA~~--Vd~TinGiGERaGNa~Le~v~~~L 250 (526)
T TIGR00977 202 GIH--------------------------AHNDSGTAVANSLLAVEAGATM--VQGTINGYGERCGNANLCSLIPNL 250 (526)
T ss_pred EEE--------------------------ECCCCChHHHHHHHHHHhCCCE--EEEecccccCccCCCcHHHHHHHH
Confidence 442 1123445577888899999996 5664 888888887766554433
No 279
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=81.33 E-value=6.6 Score=35.04 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+..+.+.+-|+++|||.- ..+...+.|+++++.. +++-+ |. |-.++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466788899998731 22222 21 11233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++++..++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 7789999999999997543
No 280
>PRK05927 hypothetical protein; Provisional
Probab=81.28 E-value=39 Score=32.34 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=67.6
Q ss_pred ecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 025344 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (254)
Q Consensus 59 fg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~---~qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (254)
|..|-..=.+-+.+.+-++..++. ++.+..=+-.|+++ .-| -..++.++.+|+.|.+ ..|+++-.+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 556665545667778888888864 45444324555552 223 4689999999999998 899998543
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecC
Q 025344 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~ 155 (254)
.++.++|++.|+.|++.|+++-+ |.-++
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G 208 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFG 208 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEe
Confidence 56779999999999999988877 44434
No 281
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=81.24 E-value=40 Score=31.89 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=76.9
Q ss_pred CcccccCChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (254)
.|...-.+-+.+.+-++..+++. +.++.=+..|+..... ....++-++.+|+.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 55554456677899999999874 5555446788775442 124688899999999864 55533 111
Q ss_pred -cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCc
Q 025344 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 126 -~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~ 200 (254)
..+.+++.+.|+.+++.|+++.+ |...+.. ++++++++.+..--+.+.+
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~s--g~i~Glg------------------------Et~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNA--TMLYGHI------------------------ETPAHRVDHMLRLRELQDE 232 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcce--EEEeeCC------------------------CCHHHHHHHHHHHHHhhHh
Confidence 46778889999999999998866 4333321 1367777777766666664
No 282
>PRK07360 FO synthase subunit 2; Reviewed
Probab=81.16 E-value=47 Score=31.78 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=86.3
Q ss_pred chhHHHHHHHhhcc-cccEEeecCcccccCC-hhHHHHHHHHHHhC--CceecCCcHHHHHHH---hCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIR---NGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l~~-~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~---qg~~~~~~yl~~~k 111 (254)
.+.++.+..+.+-+ -+.-+=+-.|...-.+ -+.+.+.++..++. +|.++.=+..|+.+. .| ...++.++.+|
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~Lk 170 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALK 170 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHH
Confidence 34444444443333 3666777777555444 45677888888874 455543356666543 23 34688999999
Q ss_pred HcCCCEE-EecCCc----------c-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 112 QVGFDTI-ELNVGS----------L-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 112 ~lGF~~I-EISdGt----------i-~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
+.|.+.+ |-|.-+ - ..+.++|++.++.+++.|+++-+ |.-.+..
T Consensus 171 eAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~g---------------------- 226 (371)
T PRK07360 171 DAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGHV---------------------- 226 (371)
T ss_pred HcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeCC----------------------
Confidence 9999998 333221 1 35778999999999999999865 4433321
Q ss_pred cccCHHHHHHHHHHHHHcCCcE
Q 025344 180 YVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
++.+++++.+..--+.+.++
T Consensus 227 --Et~edrv~~l~~lr~l~~~~ 246 (371)
T PRK07360 227 --ETPEHRIDHLLILREIQQET 246 (371)
T ss_pred --CCHHHHHHHHHHHHHhchhh
Confidence 13677777777666666555
No 283
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=81.07 E-value=17 Score=35.74 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=99.7
Q ss_pred HHHHHHHhhcccccEEeecC--------cccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc
Q 025344 42 VLEDIFESMGQFVDGLKFSG--------GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV 113 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~--------GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l 113 (254)
.++.+++.-.+-|.++.=.| +++.-..-+.+.+-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHc
Confidence 34555555555554443322 222222334566778999999976663 34444466666777788888899
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
|.+.|=+-|-.--..+.+-.++|+.+++. +.-+ ...+-||--|....+.....
T Consensus 159 ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-------v~~~--------------------~~l~~H~HnD~G~AvANsla 211 (409)
T COG0119 159 GADRINLPDTVGVATPNEVADIIEALKAN-------VPNK--------------------VILSVHCHNDLGMAVANSLA 211 (409)
T ss_pred CCcEEEECCCcCccCHHHHHHHHHHHHHh-------CCCC--------------------CeEEEEecCCcchHHHHHHH
Confidence 99999999999888889999999999984 2100 01122333456667889999
Q ss_pred HHHcCCcEEEEecccccccCCCccHHHHH
Q 025344 194 CLEAGADMIMIDSDDVCKHADSLRADIIA 222 (254)
Q Consensus 194 dLeAGA~~ViiEargi~d~~g~~r~d~i~ 222 (254)
.++|||+.|=.=-.||=+..||.--..+.
T Consensus 212 Av~aGa~~v~~TvnGiGERaGna~l~~v~ 240 (409)
T COG0119 212 AVEAGADQVEGTVNGIGERAGNAALEEVV 240 (409)
T ss_pred HHHcCCcEEEEecccceeccccccHHHHH
Confidence 99999998744334776777776554444
No 284
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=81.07 E-value=27 Score=34.21 Aligned_cols=126 Identities=23% Similarity=0.337 Sum_probs=86.8
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChhH
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEET 131 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~i~~~~ 131 (254)
.|+-+=||+||-.+++++.|++.++..+++=- ...--.|+.+--+|.. =.+.++.+++.||+ -||=|--+++.+.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 48888899999999999999999999987641 0011234444344444 35678888999999 5566666666554
Q ss_pred H------------HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 132 L------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 132 r------------~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
+ ...+..+++.||.-+. +-.-.+ + | .++.+++.+..+..++.|.
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg---------------l-P-------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG---------------L-P-------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC---------------C-C-------CCCHHHHHHHHHHHHhCCC
Confidence 4 4567777776666332 222111 1 1 2468999999999999999
Q ss_pred cEEEEec
Q 025344 200 DMIMIDS 206 (254)
Q Consensus 200 ~~ViiEa 206 (254)
+.|=+.+
T Consensus 219 dhis~y~ 225 (416)
T COG0635 219 DHLSLYS 225 (416)
T ss_pred CEEEEee
Confidence 9998777
No 285
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=81.05 E-value=8 Score=39.08 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=95.1
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc---hHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS---AFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~---~~~~yl~~~k~lGF~~I 118 (254)
.+-..|..+| ||.+=.||-.+.-...+.+++..+.-. -+..++. |.= ...++ ..+.-++.+.+.|.+.|
T Consensus 27 ~Ia~~L~~~G--Vd~IE~G~p~~s~~d~~~v~~i~~~~~-~~~~i~~--~~r---~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 27 RIAERLDDLG--IHYIEGGWPGANPKDVQFFWQLKEMNF-KNAKIVA--FCS---TRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred HHHHHHHHcC--CCEEEEeCCCCChHHHHHHHHHHHhCC-CCcEEEE--Eee---ecCCCCCCchHHHHHHHhcCCCCEE
Confidence 4455677777 999999986655444444444433110 1233332 110 00111 34677888899999999
Q ss_pred EecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 119 ELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 119 EISdGti--------~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
-|...+- ..+.++=+ +.|+.+++.|+.|. |.-.+.. |. + ..+++.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D~--------~------r~~~~~ 155 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------DG--------Y------KANPEY 155 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------ec--------c------cCCHHH
Confidence 9876653 33444333 44888999988763 4332100 10 0 115899
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
+++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 156 l~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 156 ALATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred HHHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 99999999999999986 57999999998888888665
No 286
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=80.97 E-value=22 Score=33.36 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccccC-----CCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSDDVCKHA-----DSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEargi~d~~-----g~~r~d~i~~ii~~l~ 229 (254)
++++.++.++..-++|.++|-+=+.+.+... -.+..+.+.+|-+.++
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 5788888888888899998876332222111 1223455566655554
No 287
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.86 E-value=33 Score=32.13 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
+.+..|-+.||+.|=+.-..+++.+-- =.++++.|...|.-|--|+|.=-+. +-+...+.. ...+|
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~-e~~~~~~~~-~~~~T---------- 155 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGT-EDDITVDER-EAAMT---------- 155 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCc-cCCCCcccc-hhhcC----------
Confidence 467778889999999976665443322 2367888999999999999984221 111000000 01122
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 183 DVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 183 d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
||++ ++++++ -|+|.+-|== -|+|...-+++-+.+++|-+.++
T Consensus 156 ~pe~----a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~ 202 (284)
T PRK12857 156 DPEE----ARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN 202 (284)
T ss_pred CHHH----HHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 4544 445553 3888776543 29998878999999999987765
No 288
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=80.77 E-value=28 Score=28.09 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=55.9
Q ss_pred HHHHHHHhhccc-ccEEeecCcccccCChhHH--HHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 42 ~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l--~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
...+..+.+.+. +|++-++.-.......... +....+.+.+++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444443 8888888644333322212 124455666777655532210000 011122468899999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHc--CCccccee
Q 025344 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKF 150 (254)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~ 150 (254)
+|..+....+. .-.++++.+++. ++.+...+
T Consensus 89 ~l~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~~~ 121 (200)
T cd04722 89 EIHGAVGYLAR-EDLELIRELREAVPDVKVVVKL 121 (200)
T ss_pred EEeccCCcHHH-HHHHHHHHHHHhcCCceEEEEE
Confidence 99998875533 334667777765 45444433
No 289
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=80.57 E-value=23 Score=33.05 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.+.++++-+-|.+.|=+.-.| ..++.++|.++++.+++. .+.+-+. =+|
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~-------~~grvpv-iaG------------------ 79 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA-------VGGRVPV-IAG------------------ 79 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH-------HCCCCcE-EEe------------------
Confidence 56777888888899988765443 389999999999999983 4332110 001
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCC
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN 239 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~ 239 (254)
-+..+..+-|+.++..-++|||-|++=.-=.+....+---+-...|++..++.-++.--|.
T Consensus 80 ~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 80 VGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred cCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1122478889999999999999999977644444433334445667777776667777663
No 290
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.53 E-value=14 Score=34.32 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------------i-~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
.+.+..+.+++.|||.|||+-|+=. + ..+.-.++++.+++. + +| +.+|... |
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~---~p-v~vKir~---g------- 141 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD---IP-VTVKIRI---G------- 141 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC---CC-EEEEEEc---c-------
Confidence 4555556678899999999877521 1 123334556665542 2 22 4555221 1
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc---cccccCCCccHHHHHHHHhccC
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
|. .+....++.++...++|++.|.+-+| +-|. |....+.+.+|.+.++
T Consensus 142 --------~~----~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~--~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 142 --------WD----DAHINAVEAARIAEDAGAQAVTLHGRTRAQGYS--GEANWDIIARVKQAVR 192 (319)
T ss_pred --------cC----CCcchHHHHHHHHHHhCCCEEEEEcccccccCC--CchhHHHHHHHHHcCC
Confidence 10 01223467777778899999999887 2221 3334455555555443
No 291
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=80.47 E-value=6.1 Score=36.29 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHhhcccccEEeecCccc----ccCChhHHHHHHHHHHhCCceecC--CcH---------HHHHHHhCCc----hHHHH
Q 025344 46 IFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEY 106 (254)
Q Consensus 46 lLe~ag~yID~lKfg~GT~----~l~~~~~l~eKi~l~~~~gV~v~~--Gtl---------~E~a~~qg~~----~~~~y 106 (254)
.++..++.++.|=.-|-.. .+.+. ...+.+..+|++|+++.+ |+| |..++. ++. -++..
T Consensus 18 ~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~-~~~~r~~fi~~i 95 (313)
T cd02874 18 SLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLS-NPEARQRLINNI 95 (313)
T ss_pred HHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhc-CHHHHHHHHHHH
Confidence 4445555666554333210 12222 246889999999998886 554 333332 222 36778
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (254)
++.+++.|||.|+|.=-. ++.+++..++..+++
T Consensus 96 v~~l~~~~~DGidiDwE~--~~~~d~~~~~~fl~~ 128 (313)
T cd02874 96 LALAKKYGYDGVNIDFEN--VPPEDREAYTQFLRE 128 (313)
T ss_pred HHHHHHhCCCcEEEeccc--CCHHHHHHHHHHHHH
Confidence 888999999999996433 445566555555443
No 292
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=80.39 E-value=28 Score=32.60 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+++..|-+.||+.|=+.-..+++.+--+ .++++.|...|.-|--|+|.=-+.. -+...+.. ...+|
T Consensus 90 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e-~~~~~~~~-~~~~T--------- 158 (288)
T TIGR00167 90 EEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEE-DGVSVADE-SALYT--------- 158 (288)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcc-CCcccccc-cccCC---------
Confidence 37788888999999999866655443222 3678888999999999999842211 00000000 01122
Q ss_pred cCHHHHHHHHHHHHH-cCCcEEEEecc---cccccCCC-ccHHHHHHHHhccC
Q 025344 182 EDVDLLIRRAERCLE-AGADMIMIDSD---DVCKHADS-LRADIIAKVIGRLG 229 (254)
Q Consensus 182 ~d~~~~i~~~~~dLe-AGA~~ViiEar---gi~d~~g~-~r~d~i~~ii~~l~ 229 (254)
|| ++++++++ -|.|.+-|==- |+|...-+ ++.+.+.+|-+.++
T Consensus 159 -~p----eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~ 206 (288)
T TIGR00167 159 -DP----EEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN 206 (288)
T ss_pred -CH----HHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 44 46777776 49998877543 99988777 99999999988775
No 293
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=80.39 E-value=20 Score=31.68 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 102 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~---~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
..-++.+.+.+.|++ .+.+| +|+- . ..-..+|+++++. ++++--. .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~-~~~~~~i~~i~~~-------~~~pv~~-----~G-------------- 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--R-ETMLDVVERVAEE-------VFIPLTV-----GG-------------- 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--C-cccHHHHHHHHHh-------CCCCEEE-----eC--------------
Confidence 567788888899999 55555 3322 2 2234778887773 2211000 01
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
|..+ .+.+++.+++||+.|++ +++++. +++.+.++++.++-+++++--.
T Consensus 79 --GI~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 79 --GIRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred --CCCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 1112 56677778899999998 565654 3677888888887778885543
No 294
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.39 E-value=16 Score=32.99 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
++.+...+.|++.+=|=|=.-......-..+|+++.+.-+. | +-+ | + |..|
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v-------G--G----------------GIrs- 84 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV-------G--G----------------GIRD- 84 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE-------e--C----------------CcCC-
Confidence 34444456899888776544333555556888888873221 1 222 1 0 1112
Q ss_pred HHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEE
Q 025344 185 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMF 235 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klif 235 (254)
++.+++.|++||++|+|=+.-+. +++++.++++++|.+++++
T Consensus 85 ---~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 85 ---IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLV 126 (232)
T ss_pred ---HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEE
Confidence 67888899999999998655333 4578888888888888774
No 295
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=80.36 E-value=9.3 Score=36.08 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccc
Q 025344 107 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
.+.|++.|||.|||+-|+= .-..+.-.++++.+++. + +| +.+|.- ++..+
T Consensus 83 A~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~---~p-VsvKiR---~g~~~--------- 146 (333)
T PRK11815 83 AKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVS---IP-VTVKHR---IGIDD--------- 146 (333)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC---Cc-eEEEEE---eeeCC---------
Confidence 3456778999999997752 11223334666666653 2 12 444321 11000
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc----ccccC-----CCccHHHHHHHHhcc
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD----VCKHA-----DSLRADIIAKVIGRL 228 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg----i~d~~-----g~~r~d~i~~ii~~l 228 (254)
..+..++++.++...++|++.+++-+|. -|... +....+.+.++.+.+
T Consensus 147 --------~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~ 203 (333)
T PRK11815 147 --------QDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF 203 (333)
T ss_pred --------CcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC
Confidence 1135667888888899999999999872 12211 224566666665443
No 296
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=80.34 E-value=4.2 Score=36.09 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+..+.+.+-|+.+|||.--| ....+.|+.+++. .|++-+ |+ |-.++
T Consensus 21 ~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~--------- 69 (196)
T PF01081_consen 21 DAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT--------- 69 (196)
T ss_dssp GHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S---------
T ss_pred HHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC---------
Confidence 55667788899999999997654 5567889988774 133322 21 11133
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++.++|||++++-=+
T Consensus 70 ------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 ------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp ------HHHHHHHHHHT-SEEEESS
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 7899999999999998654
No 297
>PRK02227 hypothetical protein; Provisional
Probab=80.31 E-value=47 Score=30.60 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=96.8
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCC--hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~--~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
......+..+..=+||+|.|.--..-.+ -+.++..+...+.+ +..+.+-.|.++--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999952111111 12233334444443 445555566664322221 234677888999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
.+=|... |--++.++..++++.++++|+. .|. . || +. .+
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL---A---GS---------L~---------------~~ 192 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLM----SAL---A---GS---------LK---------------FE 192 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccH----hHh---c---cc---------Cc---------------hh
Confidence 9988643 2369999999999999998765 333 1 11 11 33
Q ss_pred HHHHHHHcCCcEEEEeccccc---ccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVC---KHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~---d~~g~~r~d~i~~ii~~l~ 229 (254)
.+..-..-+.|++=+=+- +| |.++.++.+.|.++.+.+.
T Consensus 193 dip~L~~l~pD~lGfRga-vC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 193 DIPALKRLGPDILGVRGA-VCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred hHHHHHhcCCCEEEechh-ccCCCCcccccCHHHHHHHHHHhh
Confidence 333446678887755332 34 5679999999999987765
No 298
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=80.28 E-value=24 Score=31.53 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=98.5
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCCh----hHHHHHHHH--HHhCCceecC--C-cHH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK----PFIEEVVKR--AHQHDVYVST--G-DWA 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~----~~l~eKi~l--~~~~gV~v~~--G-tl~ 92 (254)
+..|++-++..+. .+..++..++.+..|=+.+..++|-+.-+-. +.+...-++ +++..+..-. | .+.
T Consensus 24 ~~~g~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIGEiGLD~~ 99 (255)
T PF01026_consen 24 REAGVSAIIIVST----DPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIGEIGLDYY 99 (255)
T ss_dssp HHTTEEEEEEEES----SHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEEEEEEETT
T ss_pred HHcCCCEEEEcCC----CHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeeeeeccCcc
Confidence 4568998988887 4568889999999999999999997765432 223233333 3444432111 3 231
Q ss_pred H-----HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 025344 93 E-----HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 93 E-----~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
. ...+.. -|.+.++.|++++-..+==+-+ .-.++++.+++.+.. .. -++-...+ +
T Consensus 100 ~~~~~~~~~Q~~--vF~~ql~lA~~~~~pv~iH~r~-------a~~~~l~il~~~~~~-~~-~~i~H~f~-----g---- 159 (255)
T PF01026_consen 100 WRNEEDKEVQEE--VFERQLELAKELNLPVSIHCRK-------AHEELLEILKEYGPP-NL-RVIFHCFS-----G---- 159 (255)
T ss_dssp TTSSSGHHHHHH--HHHHHHHHHHHHTCEEEEEEES-------HHHHHHHHHHHTTGG-TS-EEEETT-------S----
T ss_pred cccCCcHHHHHH--HHHHHHHHHHHhCCcEEEecCC-------cHHHHHHHHHhcccc-ce-eEEEecCC-----C----
Confidence 1 123333 7999999999999987744444 223677777776521 11 33432211 1
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+ .+++++.++.|.+.=+--. ++..+ .+...++++.+|+++|+.|...|
T Consensus 160 ---------------~----~~~~~~~~~~g~~~S~~~~--~~~~~----~~~~~~~~~~ip~drillETD~P 207 (255)
T PF01026_consen 160 ---------------S----PEEAKKFLDLGCYFSFSGA--ITFKN----SKKVRELIKAIPLDRILLETDAP 207 (255)
T ss_dssp --------------------HHHHHHHHHTTEEEEEEGG--GGSTT----SHHHHHHHHHS-GGGEEEE-BTT
T ss_pred ---------------C----HHHHHHHHhcCceEEeccc--ccccc----cHHHHHHHhcCChhhEEEcCCCC
Confidence 1 5566677777665433211 22211 34477788999999999998754
No 299
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=80.27 E-value=17 Score=35.10 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 103 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 103 ~~~y-l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
+|+| +.+++.+|=|+|=+=...+ ++++..++++.+++.||.|+.|++-
T Consensus 191 ID~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVEVH~----------------------------- 239 (338)
T PLN02460 191 VDAWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIEVHD----------------------------- 239 (338)
T ss_pred CCHHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEEeCC-----------------------------
Confidence 3444 6788899999987766655 5778999999999999999999876
Q ss_pred cCHHHHHHHHHHHHHc-CCcEEEEecccccccCCCccHHHHHHHHh-----ccCCCce--EEecC-CchhHHHHHHHhCC
Q 025344 182 EDVDLLIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIG-----RLGLEKT--MFEAT-NPRTSEWFIRRYGP 252 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeA-GA~~ViiEargi~d~~g~~r~d~i~~ii~-----~l~~~kl--ifEAP-~k~qQ~~~I~~~Gp 252 (254)
-+++++.|++ ||..|=|..|.+-.= ++.-+.-.+++. .++++.+ +=|.= .-..+...+++.|.
T Consensus 240 ------~~ElerAl~~~ga~iIGINNRdL~Tf--~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~Ga 311 (338)
T PLN02460 240 ------EREMDRVLGIEGVELIGINNRSLETF--EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGV 311 (338)
T ss_pred ------HHHHHHHHhcCCCCEEEEeCCCCCcc--eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCC
Confidence 4456677997 999999999966221 222334455555 4532332 33433 33355666666665
Q ss_pred C
Q 025344 253 K 253 (254)
Q Consensus 253 ~ 253 (254)
|
T Consensus 312 d 312 (338)
T PLN02460 312 K 312 (338)
T ss_pred C
Confidence 4
No 300
>PRK14847 hypothetical protein; Provisional
Probab=80.16 E-value=16 Score=35.03 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=91.0
Q ss_pred cEEeecCcccccCCh-------h----HHHHHHHHHHhCCc-------eecCCcHHHHHHHhCCchHHHHHHHHHHc-C-
Q 025344 55 DGLKFSGGSHSLMPK-------P----FIEEVVKRAHQHDV-------YVSTGDWAEHLIRNGPSAFKEYVEDCKQV-G- 114 (254)
Q Consensus 55 D~lKfg~GT~~l~~~-------~----~l~eKi~l~~~~gV-------~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l-G- 114 (254)
+.+-+...||-++-+ + .+.+-++++++++. .|..| +|-|-.-+++-+.++.+.+.+. |
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~--~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYS--PETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEe--eecCCCCCHHHHHHHHHHHHHHhCC
Confidence 446666666654322 1 23455668888843 22222 2333333334455555655344 4
Q ss_pred ----CCEEEecCCcccCChhHHHHHHHHHHHcCCc--ccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 115 ----FDTIELNVGSLEIPEETLLRYVRLVKSAGLK--AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 115 ----F~~IEISdGti~i~~~~r~~lI~~~~~~G~~--v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
-+.|-++|-.-.+.+.+-.++|+.++++ +. ...++ +.|+-.|....+
T Consensus 203 ~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~-~~~~~~v~i--------------------------~~H~HnD~GlA~ 255 (333)
T PRK14847 203 TPQRKMIINLPATVESSTANVYADQIEWMHRS-LARRDCIVL--------------------------SVHPHNDRGTAV 255 (333)
T ss_pred CccCCcEEEeCCccccCCHHHHHHHHHHHHHh-cCCCCCcEE--------------------------EEEeCCCCchHH
Confidence 6668888888888888888888888763 10 01122 234444566778
Q ss_pred HHHHHHHHcCCcEEEEecc--cccccCCCccHHHHHHHHhccCCC
Q 025344 189 RRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGRLGLE 231 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~i~~ii~~l~~~ 231 (254)
......++|||+.| ++- |+=+..||...+.+-..+...+.+
T Consensus 256 ANslaA~~aGa~~i--~~tv~G~GERaGNa~lE~v~~~L~~~g~~ 298 (333)
T PRK14847 256 AAAELAVLAGAERI--EGCLFGNGERTGNVDLVALALNLERQGIA 298 (333)
T ss_pred HHHHHHHHhCCCEE--EeeCCcCCccccchhHHHHHHHHHhcCCC
Confidence 88999999999995 554 887789999998887777666643
No 301
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.04 E-value=13 Score=36.06 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCcEEEEecc-----cccccCCCccHHHHHHHHhccC-CCceEEecCCc
Q 025344 187 LIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLG-LEKTMFEATNP 240 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l~-~~klifEAP~k 240 (254)
....++..+.+||+-+|||-- -++|..-.+..+.++++++.+- +.+.+=..|+|
T Consensus 288 ~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~~~~~ 347 (352)
T PRK13396 288 VPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGRWPQP 347 (352)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 357889999999999999983 7789999999999999997765 55555556655
No 302
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=79.95 E-value=9.6 Score=31.50 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 176 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~ 176 (254)
+.+.+.++++.+.|++.|++.- .+++.+++. | ..+. +|+-.+.+ .
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~--~~v~~~~~-------------~----- 61 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVI--VVVGFPTG-------------L----- 61 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEE--EEecCCCC-------------C-----
Confidence 4688888999999999999985 555555442 1 2222 22210000 0
Q ss_pred ccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 177 STEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 177 ~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
...++.++++++..++||+.|++-.-
T Consensus 62 -----~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 62 -----TTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred -----CcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 12678899999999999999999764
No 303
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=79.85 E-value=8.7 Score=35.81 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=70.5
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChh---HHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH--HcCC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK--QVGF 115 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~---~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k--~lGF 115 (254)
..+.+++..++|+.++|.|+.-..-+-.+ .|++.++.+++.|++|..- =+..+- +.+..|.+.+- ++|+
T Consensus 42 f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~ 116 (278)
T PRK00125 42 FCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFESPLEA 116 (278)
T ss_pred HHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcCccCC
Confidence 34899999999999999999776666544 6889999999999988763 344443 24556666666 7999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcC
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
|+|-|+- -+..+....+++.+++.|
T Consensus 117 DavTVhp---~~G~d~l~~~~~~~~~~~ 141 (278)
T PRK00125 117 DAVTVSP---YMGFDSLEPYLEYAEEHG 141 (278)
T ss_pred cEEEECC---cCCHHHHHHHHHHHHhcC
Confidence 9999994 456666666777766554
No 304
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=79.78 E-value=29 Score=31.57 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=87.3
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
-+.+-..+.-++++-.+ .+.|.+.++.-++-+|++|+.++- |.| .+++=.++.+++|.+.
T Consensus 71 ~e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~ 133 (217)
T COG0269 71 IEARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQ 133 (217)
T ss_pred HHHHHHHHcCCCEEEEE-------ecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCE
Confidence 34445555555655443 467888999999999999998774 444 3444455667899999
Q ss_pred EEecCCccc----CCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 118 IELNVGSLE----IPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 118 IEISdGti~----i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
+.+--|.-. .+. .+.++-|++..+.|+++--==| ++ .+.+.
T Consensus 134 ~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGG-------------------I~---------------~~~i~ 179 (217)
T COG0269 134 VILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGG-------------------IT---------------PEDIP 179 (217)
T ss_pred EEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecC-------------------CC---------------HHHHH
Confidence 999877542 233 4556777777776655322111 22 56677
Q ss_pred HHHHcCCcEEEEecccccccCCCccHHHHHHHHhc
Q 025344 193 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 227 (254)
Q Consensus 193 ~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~ 227 (254)
.+++.|++.||+ +|.|+++.+- ....+++.+.
T Consensus 180 ~~~~~~~~ivIv-GraIt~a~dp--~~~a~~~~~~ 211 (217)
T COG0269 180 LFKGIGADIVIV-GRAITGAKDP--AEAARKFKEE 211 (217)
T ss_pred HHhcCCCCEEEE-CchhcCCCCH--HHHHHHHHHH
Confidence 889999887776 8888888763 3334444443
No 305
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=79.74 E-value=6.2 Score=43.53 Aligned_cols=114 Identities=14% Similarity=0.244 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHHhCCceecC---C-cHHHH-----------------HHHhC-----Cc----hHH---HHHHHHHHc
Q 025344 67 MPKPFIEEVVKRAHQHDVYVST---G-DWAEH-----------------LIRNG-----PS----AFK---EYVEDCKQV 113 (254)
Q Consensus 67 ~~~~~l~eKi~l~~~~gV~v~~---G-tl~E~-----------------a~~qg-----~~----~~~---~yl~~~k~l 113 (254)
||.++++.-++.+.++||.++- . .|++- ++..- +. .++ ++.+.+.++
T Consensus 622 ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~ 701 (1143)
T TIGR01235 622 YPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKA 701 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHc
Confidence 7777777777777777775541 1 23222 11110 11 144 555666889
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
|.+.|=|.|-.--+.+..=.++|+.+++. +. ..+++-+ +. |...-+.....
T Consensus 702 Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~-~~--~pi~~H~-Hd-------------------------t~Gla~an~la 752 (1143)
T TIGR01235 702 GAHILGIKDMAGLLKPAAAKLLIKALREK-TD--LPIHFHT-HD-------------------------TSGIAVASMLA 752 (1143)
T ss_pred CCCEEEECCCcCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCCcHHHHHHH
Confidence 99999999999999999999999999984 22 1233310 21 22334677778
Q ss_pred HHHcCCcEEEEecccc
Q 025344 194 CLEAGADMIMIDSDDV 209 (254)
Q Consensus 194 dLeAGA~~ViiEargi 209 (254)
.++|||+.|=.=-.|+
T Consensus 753 A~eaGad~vD~ai~gl 768 (1143)
T TIGR01235 753 AVEAGVDVVDVAVDSM 768 (1143)
T ss_pred HHHhCCCEEEecchhh
Confidence 8999999853333355
No 306
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=79.67 E-value=14 Score=34.70 Aligned_cols=81 Identities=31% Similarity=0.398 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccCC-------hhHHHHHHHHHHHcC--C-cccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVG--FDTIELNVGSLEIP-------EETLLRYVRLVKSAG--L-KAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i~-------~~~r~~lI~~~~~~G--~-~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
..++|.+.+++++ +++||++-++-..+ .+.-.++++.+++.= + +-+| +.+|-
T Consensus 146 ~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P-v~vKl--------------- 209 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP-LLVKI--------------- 209 (327)
T ss_pred cHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC-eEEEe---------------
Confidence 5788888888877 99999987655432 345557777777630 0 0022 44442
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+|. | +.++..+.++...++||+.|.+=.+
T Consensus 210 --~~~-~------~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 210 --APD-L------SDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred --CCC-C------CHHHHHHHHHHHHHcCCcEEEEECC
Confidence 211 1 2456788888889999999987664
No 307
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=79.65 E-value=53 Score=30.82 Aligned_cols=170 Identities=11% Similarity=0.125 Sum_probs=101.4
Q ss_pred hHHHHHHHhhc--ccccEEeecCcccccCChhHHHHHHHHHHhCC-ce-ecCCc-HHHHHHHhCCchHHHHHHHHHHcCC
Q 025344 41 NVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VY-VSTGD-WAEHLIRNGPSAFKEYVEDCKQVGF 115 (254)
Q Consensus 41 ~~~~DlLe~ag--~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g-V~-v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF 115 (254)
..++.+++... .-|.-+-|++|--.+.+.+.|.+.++.+++.+ |. +-.|| ... ..-+- --++.++.+++.|.
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v-~~p~r--it~ell~~L~~~g~ 198 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPV-ADPAR--VTPALIAALKTSGK 198 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcc-cChhh--cCHHHHHHHHHcCC
Confidence 44555555332 24677889999999998778999999999876 21 22243 111 10111 23577788888896
Q ss_pred CEEEecCCcc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHH
Q 025344 116 DTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 192 (254)
Q Consensus 116 ~~IEISdGti---~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~ 192 (254)
. +-||--+. .+. ++-.+.|+++++.|+.+...+-+- ..+ .| +.+.+.+..+
T Consensus 199 ~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~vLl---~gv---Nd------------------~~~~l~~l~~ 252 (321)
T TIGR03822 199 T-VYVALHANHARELT-AEARAACARLIDAGIPMVSQSVLL---RGV---ND------------------DPETLAALMR 252 (321)
T ss_pred c-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEeeEe---CCC---CC------------------CHHHHHHHHH
Confidence 5 44654332 233 555689999999998776655442 111 11 3677888888
Q ss_pred HHHHcCCcEEEEec----cc--ccccCCCccHHHHHHHHhccC---CCceEEecCC
Q 025344 193 RCLEAGADMIMIDS----DD--VCKHADSLRADIIAKVIGRLG---LEKTMFEATN 239 (254)
Q Consensus 193 ~dLeAGA~~ViiEa----rg--i~d~~g~~r~d~i~~ii~~l~---~~klifEAP~ 239 (254)
..++.|+...-+.- .| .|+-.-.--.++++++.++++ .-+++-|.|.
T Consensus 253 ~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 253 AFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 88899987544433 13 222111111344555555554 5577777774
No 308
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=79.46 E-value=30 Score=32.71 Aligned_cols=128 Identities=12% Similarity=0.137 Sum_probs=85.9
Q ss_pred hHHHHHHHhhcc--cccEEeecCcccccCChhHHHHHHHHHHhC----CceecC---CcHHHHHHHhCCchHHHHHHHHH
Q 025344 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 41 ~~~~DlLe~ag~--yID~lKfg~GT~~l~~~~~l~eKi~l~~~~----gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
..++.+++.... -|.-+-|.+|--.+.+.+.|.+.++.+++. +|.+.+ +++-.. --++.++.++
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 455555554433 366788999998888877788888888774 455543 333211 1246777788
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 112 ~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.|+..+=+| ++.-+++++. .+.|++++++|+.+....-.-.+ + .+ +++.+.+
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~~-~~ai~~L~~aGi~v~~qtvLl~g---v--nD-------------------~~~~l~~ 272 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEEF-AEAMKKLRTVNVTLLNQSVLLRG---V--ND-------------------RAQILAK 272 (331)
T ss_pred hcCCcEEEEccCCChHhCCHHH-HHHHHHHHHcCCEEEeecceECC---c--CC-------------------CHHHHHH
Confidence 8899998888 5555666555 58899999999886665555211 1 11 3667788
Q ss_pred HHHHHHHcCCc
Q 025344 190 RAERCLEAGAD 200 (254)
Q Consensus 190 ~~~~dLeAGA~ 200 (254)
..+...++|+.
T Consensus 273 L~~~l~~~gV~ 283 (331)
T TIGR00238 273 LSIALFKVGII 283 (331)
T ss_pred HHHHHhhcCee
Confidence 88888888974
No 309
>PRK12677 xylose isomerase; Provisional
Probab=79.33 E-value=10 Score=36.68 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=67.2
Q ss_pred EeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---cCChhH-
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---EIPEET- 131 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~- 131 (254)
.||+||-+.+-.. |..+|.+ | +.+-.+.+.++.+.++||++||+.+..+ ..+..+
T Consensus 6 ~~f~~~~w~~~~~-------------~~~~~g~~~-------~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~ 65 (384)
T PRK12677 6 DKFSFGLWTVGWQ-------------GRDPFGDAT-------RPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAER 65 (384)
T ss_pred ceeEEEEeeccCC-------------CCCCCCCCC-------CCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhh
Confidence 3888887777633 2244432 3 2223588889999999999999986543 223332
Q ss_pred ---HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 132 ---LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 132 ---r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..++-+.+++.|++|..-..--++.... ++ +...+|.+ ......++.+.+.+.-.-+.||..|.+=+
T Consensus 66 ~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~---g~lts~d~--~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~ 135 (384)
T PRK12677 66 DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KD---GAFTSNDR--DVRRYALRKVLRNIDLAAELGAKTYVMWG 135 (384)
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cC---CcCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 4567777889999955311100100000 00 00011100 00112355566777777788999877743
No 310
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=79.17 E-value=12 Score=34.40 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=90.2
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhH-------HHHHHHHHHh--CCceecCCcHHHHHHHhCCchHH--HHHHHH
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF-------IEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDC 110 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~-------l~eKi~l~~~--~gV~v~~Gtl~E~a~~qg~~~~~--~yl~~~ 110 (254)
.....+..+..=+||+|+|. ++... ++.-+..+++ .+..+..-.|.... .-| .++ +..+.+
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl-----~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a 140 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGL-----FGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIA 140 (235)
T ss_pred HHHHHHHHHhcCCCEEEEec-----CCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHH
Confidence 34456666666799999995 33222 2333333333 34555555666643 223 343 457889
Q ss_pred HHcCCCEEEecCC-----c--ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 111 KQVGFDTIELNVG-----S--LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 111 k~lGF~~IEISdG-----t--i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
++.||+.+=|... + --++.++..++++.++++|+. .|. . || +.
T Consensus 141 ~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL---A---GS---------L~----------- 190 (235)
T PF04476_consen 141 AEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM----CAL---A---GS---------LR----------- 190 (235)
T ss_pred HHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch----hhc---c---cc---------CC-----------
Confidence 9999999988642 2 268999999999999998775 333 1 11 21
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccccc----CCCccHHHHHHHHhcc
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCKH----ADSLRADIIAKVIGRL 228 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d~----~g~~r~d~i~~ii~~l 228 (254)
.+.+..-..-|.|++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 191 ----~~di~~L~~l~pD~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 191 ----FEDIPRLKRLGPDILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred ----hhHHHHHHhcCCCEEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 33333445678888755332 3443 4789999999887644
No 311
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.07 E-value=23 Score=31.72 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
...+..+.+.+.|++.|=|-|=+-+ .....-.++|+++++. +.+. . .+ .+ |
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-------~~ip--v-~~--~G----------------G 82 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-------VFIP--L-TV--GG----------------G 82 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-------CCCC--E-Ee--eC----------------C
Confidence 4556666777899999998887753 3445556888888773 2211 0 00 01 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
..+ .+.+++.+++||+.|++= ++.+. +.+.+.++.+.+|-+++++=.+
T Consensus 83 i~s----~~~~~~~l~~Ga~~Viig-t~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 83 IRS----VEDARRLLRAGADKVSIN-SAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred CCC----HHHHHHHHHcCCCEEEEC-hhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 112 667777788999999994 43333 3578999999888888887664
No 312
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=78.99 E-value=11 Score=34.93 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
++...+.++.+++.|+++|+++-++.........+.|+.+++. + .| +.+|. + .
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~---~p-vivK~----v-----------~------- 181 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK---GP-LILKG----I-----------L------- 181 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC---CC-EEEee----c-----------C-------
Confidence 3456777888899999999998887542211122456666663 2 11 33331 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccc-CCCccHHHHHHHHhcc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRL 228 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~i~~ii~~l 228 (254)
+ .+.+++..++||+.|++-++|-... .|....+.+.++.+.+
T Consensus 182 ----s----~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~ 224 (299)
T cd02809 182 ----T----PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV 224 (299)
T ss_pred ----C----HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh
Confidence 1 4668888999999999988742211 2333445555555544
No 313
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=78.97 E-value=17 Score=35.36 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHcC
Q 025344 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAG 143 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~G 143 (254)
..+.+.+.|.-.++.+|.+..-. ++....++.+.+.+.|.+.|-|..-|.+- ...++..+.+..++.+
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl--------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~ 188 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV--------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELD 188 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCC
Confidence 34566777777777765444321 23478899999999999999997544321 1234666777666655
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEE
Q 025344 144 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (254)
Q Consensus 144 ~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vi 203 (254)
..|+. |- + . | .+.+++.+++|||.||
T Consensus 189 IPVI~--G~------V-----------~-----------t----~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 189 VPVIA--GG------V-----------N-----------D----YTTALHLMRTGAAGVI 214 (369)
T ss_pred CCEEE--eC------C-----------C-----------C----HHHHHHHHHcCCCEEE
Confidence 44432 11 1 1 1 4566777889999999
No 314
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=78.93 E-value=5.8 Score=37.08 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 025344 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (254)
Q Consensus 69 ~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~ 138 (254)
...+...|.-+|+.|+.|. .|||-...+.+... -++.|.+.+..+||+.|.|.==.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4558889999999998554 48876544443322 266788899999999999842221122 2678888888
Q ss_pred HHHc
Q 025344 139 VKSA 142 (254)
Q Consensus 139 ~~~~ 142 (254)
+++.
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 8875
No 315
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=78.89 E-value=3.6 Score=39.65 Aligned_cols=115 Identities=19% Similarity=0.301 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCceecC--CcHH--H------------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-
Q 025344 72 IEEVVKRAHQHDVYVST--GDWA--E------------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP- 128 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~--Gtl~--E------------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~- 128 (254)
-++-+++||.+||.|-. |..- | -+..- .-++-.+.+++.|.|++=||-||.-=.
T Consensus 125 Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T---~PeeA~~Fv~~TgvD~LAvaiGt~HG~Y 201 (347)
T PRK13399 125 TRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLT---DPDQAVDFVQRTGVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCC---CHHHHHHHHHHHCcCEEhhhhccccCCc
Confidence 47889999999997763 5221 1 01122 345666666778999999999998221
Q ss_pred -----hh---HHHHHHHHHHHcCCcccceeeeecCCCCCCC---------ccccccccccccCCCccccccCHHHHHHHH
Q 025344 129 -----EE---TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS---------DRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 129 -----~~---~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~---------~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
+. -...+++.+++. ..-.| =|-++.|.++. +++-+ +++=.| .+++
T Consensus 202 k~~~~p~~~~L~~drl~eI~~~-v~~vP--LVLHGgSGvp~~~~~~~~~~g~~~~-~~~g~~--------------~e~~ 263 (347)
T PRK13399 202 KFTRKPDGDILAIDRIEEIHAR-LPNTH--LVMHGSSSVPQELQEIINAYGGKMK-ETYGVP--------------VEEI 263 (347)
T ss_pred CCCCCCChhhccHHHHHHHHhh-cCCCC--EEEeCCCCCCHHHHHHHHHhcCCcc-ccCCCC--------------HHHH
Confidence 11 233445555552 10012 15555554420 00000 000001 5789
Q ss_pred HHHHHcCCcEEEEecc
Q 025344 192 ERCLEAGADMIMIDSD 207 (254)
Q Consensus 192 ~~dLeAGA~~ViiEar 207 (254)
+++++.|..+|=|-.+
T Consensus 264 ~kai~~GI~KINi~Td 279 (347)
T PRK13399 264 QRGIKHGVRKVNIDTD 279 (347)
T ss_pred HHHHHCCCeEEEeChH
Confidence 9999999999987764
No 316
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=78.69 E-value=19 Score=33.48 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHH
Q 025344 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 186 (254)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~ 186 (254)
+.+++..|-|+|=+=-. -|++++..++...+.+.||.|+.|++-
T Consensus 122 I~~Ar~~GADavLLI~~--~L~~~~l~el~~~A~~LGm~~LVEVh~---------------------------------- 165 (254)
T COG0134 122 IYEARAAGADAVLLIVA--ALDDEQLEELVDRAHELGMEVLVEVHN---------------------------------- 165 (254)
T ss_pred HHHHHHcCcccHHHHHH--hcCHHHHHHHHHHHHHcCCeeEEEECC----------------------------------
Confidence 67888999988754332 467888899999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCce-EEecCC-chhHHHHHHHhCCC
Q 025344 187 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATN-PRTSEWFIRRYGPK 253 (254)
Q Consensus 187 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~kl-ifEAP~-k~qQ~~~I~~~Gp~ 253 (254)
.+.+++.+++||..|=|.-|.+-+= ++.-+.-.+++..+|-+.+ |=|.=- ...+.-.+.++|.|
T Consensus 166 -~eEl~rAl~~ga~iIGINnRdL~tf--~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~ 231 (254)
T COG0134 166 -EEELERALKLGAKIIGINNRDLTTL--EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGAD 231 (254)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCcchh--eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCC
Confidence 5667888999999999999976332 2223346677777775544 445543 35666666666654
No 317
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.68 E-value=40 Score=30.54 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-s~v~~~~d~~~~~~~~~~ 174 (254)
.+..-++++.++|+++|||--..=. ++.++..++.+.+.++++.+.+ +.+-.+. -.+.+ .|++
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~iNlas-~~~~-------- 81 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYLINLAS-PDEE-------- 81 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCeeeecCC-CCHH--------
Confidence 5666777889999999999544432 4455554554556777665321 2221111 01111 1111
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCC----ccHHHHHHHHhccCCCceEEec--C-------Cch
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA--T-------NPR 241 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~----~r~d~i~~ii~~l~~~klifEA--P-------~k~ 241 (254)
-...+++.+.+.++.+-+-||..|.+..--..+...+ .-.+.+.++++...-=+|..|- . .+.
T Consensus 82 ----~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~ 157 (274)
T TIGR00587 82 ----KEEKSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFE 157 (274)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHH
Confidence 0123567777778778888999999987322221000 0112233344322223588883 2 455
Q ss_pred hHHHHHHHhC
Q 025344 242 TSEWFIRRYG 251 (254)
Q Consensus 242 qQ~~~I~~~G 251 (254)
+-..++..++
T Consensus 158 el~~ll~~~~ 167 (274)
T TIGR00587 158 ELAYIIKVIV 167 (274)
T ss_pred HHHHHHHhcC
Confidence 5667887776
No 318
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=78.23 E-value=21 Score=34.03 Aligned_cols=177 Identities=20% Similarity=0.235 Sum_probs=110.5
Q ss_pred ceeEecCCCCCCcchhHHHHHHH---hhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC---CcHHHHHHHhC
Q 025344 26 VTEMRSPHYTLSSSHNVLEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNG 99 (254)
Q Consensus 26 lT~V~DkG~~~~~g~~~~~DlLe---~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg 99 (254)
.|++-+||+.+ ....++.+++ ..-.=-|++=+++---.=+|.++..+.++++|+.|++|-. |-.+..++.++
T Consensus 101 ~Tein~~Gp~i--s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~ 178 (310)
T COG1105 101 ETEINFPGPEI--SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK 178 (310)
T ss_pred EEEecCCCCCC--CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC
Confidence 89999999977 5555555554 4445678999999888889999999999999999998764 65666666665
Q ss_pred Cc---------------------hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCccc-ceeeeec
Q 025344 100 PS---------------------AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAK-PKFAVMF 154 (254)
Q Consensus 100 ~~---------------------~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r~~lI~~~~~~G~~v~-~E~g~k~ 154 (254)
|. .+.+|.+.+...|...|=||.|. +-+..+.- +.+. |.+-+
T Consensus 179 P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~-----------~~a~~p~~~v-- 245 (310)
T COG1105 179 PWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGV-----------YFASPPKVQV-- 245 (310)
T ss_pred CcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCe-----------EEEeCCCcce--
Confidence 43 23455556667888888888654 33333332 1111 33444
Q ss_pred CCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCc
Q 025344 155 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK 232 (254)
Q Consensus 155 ~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~k 232 (254)
.|.+|+ +|+.....++ .| ....++++.++.+ ..+|+..+.-+. .|.+..+.++++.+++-.++
T Consensus 246 -vstVGA-GDs~VAGf~~--~~--~~~~~~e~~l~~a---vA~g~a~~~~~~------~~~~~~~~~~~~~~~v~v~~ 308 (310)
T COG1105 246 -VSTVGA-GDSMVAGFLA--GL--LKGKSLEEALRFA---VACGAAAASQKG------TGIPDLDQLKKIYAQVTVEK 308 (310)
T ss_pred -ecCcCc-hHHHHHHHHH--HH--HcCCCHHHHHHHH---HHHHHHHhhcCC------CCCCCHHHHHHHhhheEEEe
Confidence 456775 5543322221 11 1123455554444 556666555443 35556666777777665443
No 319
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=78.18 E-value=31 Score=33.29 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred hhcccccEEeecCcccccCChhHHHHHHHHHHhCCc--eecCCc---HHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-
Q 025344 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGD---WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV- 122 (254)
Q Consensus 49 ~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV--~v~~Gt---l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd- 122 (254)
.+.+|+|++|+|-+. +.+-+.|+ .+-+.|. .+++|. +-|.. .-++.+.+-|-+-|=+-.
T Consensus 197 ~l~~~vd~lkI~s~~--~~n~~LL~----~~a~~gkPVilk~G~~~t~~e~~---------~Ave~i~~~Gn~~i~L~er 261 (360)
T PRK12595 197 VALDYVDVIQIGARN--MQNFELLK----AAGRVNKPVLLKRGLSATIEEFI---------YAAEYIMSQGNGQIILCER 261 (360)
T ss_pred HHHHhCCeEEECccc--ccCHHHHH----HHHccCCcEEEeCCCCCCHHHHH---------HHHHHHHHCCCCCEEEECC
Confidence 345679999999776 44443333 3334565 445563 33322 223445666776666665
Q ss_pred CcccCChh----HHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc
Q 025344 123 GSLEIPEE----TLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 197 (254)
Q Consensus 123 Gti~i~~~----~r~~lI~~~~~-~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA 197 (254)
|+-.-|.. --++.|..+++ .++ | +|.-- .+.. + +.+.....+...+.+
T Consensus 262 g~s~yp~~~~~~ldl~~i~~lk~~~~~---P-V~~d~-~Hs~---G-------------------~r~~~~~~a~aAva~ 314 (360)
T PRK12595 262 GIRTYEKATRNTLDISAVPILKQETHL---P-VMVDV-THST---G-------------------RRDLLLPTAKAALAI 314 (360)
T ss_pred ccCCCCCCCCCCcCHHHHHHHHHHhCC---C-EEEeC-CCCC---c-------------------chhhHHHHHHHHHHc
Confidence 76654422 34567777777 222 2 44411 1111 1 123446678888999
Q ss_pred CCcEEEEecc-----cccccCCCccHHHHHHHHhcc
Q 025344 198 GADMIMIDSD-----DVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 198 GA~~ViiEar-----gi~d~~g~~r~d~i~~ii~~l 228 (254)
||+-+|||-- ..+|..-.+..+.+.++++.+
T Consensus 315 GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 315 GADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred CCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHH
Confidence 9999999983 678999999999999998765
No 320
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.07 E-value=14 Score=38.78 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 025344 183 DVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
++++.++.++..-++|+|+|-|=
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeC
Confidence 67888999999889999999884
No 321
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=77.62 E-value=7.2 Score=35.31 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
++.-+..++++|-+.|-.=.=--.=..++...+-+.+.++||..-|-=|+
T Consensus 137 vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTGGI------------------------------ 186 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTGGI------------------------------ 186 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBSS-------------------------------
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcCCc------------------------------
Confidence 67788888888888777532222223556666677777888776443333
Q ss_pred CHHHHHHHHHHHHHcCCcEEE
Q 025344 183 DVDLLIRRAERCLEAGADMIM 203 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~Vi 203 (254)
|++.+-+..+-+|+||+.+||
T Consensus 187 dl~N~~~I~~i~l~aGv~~vi 207 (218)
T PF07071_consen 187 DLDNFEEIVKICLDAGVEKVI 207 (218)
T ss_dssp -TTTHHHHHHHHHHTT-S-B-
T ss_pred CHHHHHHHHHHHHHcCCCeec
Confidence 234446667788999998887
No 322
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=77.26 E-value=10 Score=34.78 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCH
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 184 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~ 184 (254)
.-.+.+...|||.|-|.-=--.++.++...+|+.++..|..++.-+-- .|
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~----------~~-------------------- 80 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT----------NE-------------------- 80 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 344556788999999999999999999999999999988766543211 11
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 025344 185 DLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 185 ~~~i~~~~~dLeAGA~~ViiE 205 (254)
-..+++.||+||+-||+=
T Consensus 81 ---~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 81 ---PVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ---HHHHHHHhCCCCCeeeec
Confidence 245677899999999974
No 323
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.24 E-value=14 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
-++++.++.++..-++|+|+|-|=++
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 36888999999999999999988654
No 324
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=76.96 E-value=37 Score=31.86 Aligned_cols=163 Identities=10% Similarity=0.151 Sum_probs=95.8
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC----CcH----HHHH------------------
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDW----AEHL------------------ 95 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----Gtl----~E~a------------------ 95 (254)
.++++|..|-. =+++-|.+-+++-+.++.-|+-|.+.+.++.. |++ ++.+
T Consensus 5 ~~k~iL~~A~~----~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValH 80 (286)
T PRK12738 5 STKYLLQDAQA----NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_pred cHHHHHHHHHH----CCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34455544322 24555666666666666666666666654321 111 1110
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccc-cc---cc
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-AF---GA 169 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~-~~---~~ 169 (254)
+-++ .=-+.+..|-+.||+.|=+.-..+++.+-- =.++++.|...|.-|-.|+|.=-+ +.|. .. ..
T Consensus 81 LDHg--~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg------~ed~~~~~~~~~ 152 (286)
T PRK12738 81 LDHH--ESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG------VEDDMSVDAESA 152 (286)
T ss_pred CCCC--CCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC------ccCCcccccchh
Confidence 0112 123467778899999999976654443322 236788889999999999998421 1121 00 01
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
.+| ||++..+.+++ -|+|.+=|== -|+|...-+++-|.+++|-+.++
T Consensus 153 ~~T----------~peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~ 202 (286)
T PRK12738 153 FLT----------DPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD 202 (286)
T ss_pred cCC----------CHHHHHHHHHH---hCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC
Confidence 122 45554444432 3888765532 39998888999999999987765
No 325
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.89 E-value=6.2 Score=37.63 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCceecC-CcH-HHHHH----HhCCchHHHHHHHHHHcCCCEEEecCC
Q 025344 72 IEEVVKRAHQHDVYVST-GDW-AEHLI----RNGPSAFKEYVEDCKQVGFDTIELNVG 123 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~-Gtl-~E~a~----~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (254)
=.+-+..||++||+|.+ |++ ++.+- ++. -++.-++.+++.|||.|.|.==
T Consensus 66 ~~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~--fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 66 DDELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQ--WIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CHHHHHHHHHcCCEEEEECccCHHHcCCHHHHHH--HHHHHHHHHHHhCCCeEEEccc
Confidence 35778899999999888 553 44321 111 3688899999999999998633
No 326
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=76.80 E-value=20 Score=31.97 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.--++.+..++.|++.+=|=|=.-....+.-..+|+++.+.= .+.++.+. + .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~-----~~~v~vgG------G-----------------i 87 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW-----PLGLWVDG------G-----------------I 87 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC-----CCCEEEec------C-----------------c
Confidence 445566666777999888766544445666678888887731 11221111 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
.+ ++.+++.|++||++|++=+.-+. + +++.++++++|-+++++=-.-+
T Consensus 88 r~----~edv~~~l~~Ga~~viigt~~~~------~-~~~~~~~~~~~~~~iivslD~~ 135 (233)
T cd04723 88 RS----LENAQEWLKRGASRVIVGTETLP------S-DDDEDRLAALGEQRLVLSLDFR 135 (233)
T ss_pred CC----HHHHHHHHHcCCCeEEEcceecc------c-hHHHHHHHhcCCCCeEEEEecc
Confidence 12 78899999999999999655322 2 4677777777755777655443
No 327
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=76.62 E-value=14 Score=32.09 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=81.4
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC----C-----cHHHHH
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G-----DWAEHL 95 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----G-----tl~E~a 95 (254)
++..+.+=|. . .+...+.+++.. .|. .-.|++.+.+++.+++..+.+.+..|.++. | +|.+.
T Consensus 73 ~~pv~~~GgI--~-~~e~~~~~~~~G---ad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~- 143 (234)
T cd04732 73 GIPVQVGGGI--R-SLEDIERLLDLG---VSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLET- 143 (234)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcC---CCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeee-
Confidence 4556666664 3 567777888743 443 357888888888777776665442332221 1 23211
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccc
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
. +....++++.+.+.|++.+=+. +|+..=++ .++|+.+++. ...++...|+
T Consensus 144 -~--~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~---~~~i~~i~~~~~ipvi~~GGi------------------ 199 (234)
T cd04732 144 -S--EVSLEELAKRFEELGVKAIIYTDISRDGTLSGPN---FELYKELAAATGIPVIASGGV------------------ 199 (234)
T ss_pred -c--CCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC---HHHHHHHHHhcCCCEEEecCC------------------
Confidence 1 2257788899999999988665 33332222 4667777663 2223332222
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
.++ +.+++.++.||+-||+ ++.++.+.
T Consensus 200 -----------~~~----~di~~~~~~Ga~gv~v-g~~~~~~~ 226 (234)
T cd04732 200 -----------SSL----DDIKALKELGVAGVIV-GKALYEGK 226 (234)
T ss_pred -----------CCH----HHHHHHHHCCCCEEEE-eHHHHcCC
Confidence 123 3444556679999999 66665543
No 328
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=76.44 E-value=40 Score=30.10 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=74.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc----eecCCcHHHHH---HHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVSTGDWAEHL---IRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV----~v~~Gtl~E~a---~~qg~~~~~~yl~~~k 111 (254)
+..+++.+.+.-+++|-+. +-.+...+++-++.++++|. -+.|.|-+|.+ +.+. .+|.-+-.+.
T Consensus 77 p~~~i~~~~~~Gad~itvH-------~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~--~vD~Vl~m~v 147 (228)
T PTZ00170 77 PEKWVDDFAKAGASQFTFH-------IEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTD--LVDMVLVMTV 147 (228)
T ss_pred HHHHHHHHHHcCCCEEEEe-------ccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccc--hhhhHHhhhc
Confidence 3456666666655666552 22233337888888888875 33455533333 2223 5666667777
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHH
Q 025344 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 191 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~ 191 (254)
+-||+..-.+... ..-|+++++. ....++.+- | . ++ .+.+
T Consensus 148 ~pG~~gq~~~~~~--------~~ki~~~~~~--~~~~~I~Vd------G--------G-I~---------------~~ti 187 (228)
T PTZ00170 148 EPGFGGQSFMHDM--------MPKVRELRKR--YPHLNIQVD------G--------G-IN---------------LETI 187 (228)
T ss_pred ccCCCCcEecHHH--------HHHHHHHHHh--cccCeEEEC------C--------C-CC---------------HHHH
Confidence 7888744333211 1223444442 001223330 0 0 21 4588
Q ss_pred HHHHHcCCcEEEEecccccccCCCccHHHHHHHHh
Q 025344 192 ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 226 (254)
Q Consensus 192 ~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~ 226 (254)
....+||||.+++ +|.||.++ + -.+.+.+|.+
T Consensus 188 ~~~~~aGad~iVv-GsaI~~a~-d-~~~~~~~i~~ 219 (228)
T PTZ00170 188 DIAADAGANVIVA-GSSIFKAK-D-RKQAIELLRE 219 (228)
T ss_pred HHHHHcCCCEEEE-chHHhCCC-C-HHHHHHHHHH
Confidence 8889999999988 67898754 3 2344555543
No 329
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.37 E-value=11 Score=33.46 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+-.+.+.+-||.+|||.- ......+.|+++++.. +++-+ |+ |-.++
T Consensus 17 ~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~----~~~~v-------GA------GTVl~--------- 65 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAEV----EEAIV-------GA------GTILN--------- 65 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------ee------EeCcC---------
Confidence 455677888999999999865 4566788999988742 22222 21 11233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+++++.++|||++++-=+
T Consensus 66 ------~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 66 ------AKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6789999999999998544
No 330
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=76.32 E-value=68 Score=30.03 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=49.4
Q ss_pred EEeecCcccccCChhHHHHHHHHHHhCC---c----eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-c
Q 025344 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHD---V----YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-E 126 (254)
Q Consensus 56 ~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V----~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-~ 126 (254)
-+-|.+|=-.+.|.+.+++.+++++++| + .+.| |+++. ++.++.+++.|+ .|-||=... +
T Consensus 60 ~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~----------~~~~~~l~~~~~-~v~iSlDg~~~ 128 (370)
T PRK13758 60 SFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLID----------ESWAKFLSENKF-LVGLSMDGPKE 128 (370)
T ss_pred EEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecC----------HHHHHHHHHcCc-eEEEeecCCHH
Confidence 4568888888887777899999999986 3 2445 77653 233344455676 788873332 2
Q ss_pred C------------ChhHHHHHHHHHHHcCCc
Q 025344 127 I------------PEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 127 i------------~~~~r~~lI~~~~~~G~~ 145 (254)
+ +.+.-.+-|+.+++.|..
T Consensus 129 ~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~ 159 (370)
T PRK13758 129 IHNLNRKDCCGLDTFSKVERAAELFKKYKVE 159 (370)
T ss_pred HhccccCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 1 112224556777777654
No 331
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=76.14 E-value=28 Score=30.00 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCc
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNP 240 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k 240 (254)
+++.+.++.|++.-+-.+ ++. -+...+.+++..++.+|++||...|
T Consensus 158 ~~~~~~~~~g~~~~~~~~--~~~----~~~~~~~~~i~~~~~dril~~TD~p 203 (252)
T TIGR00010 158 ELAKKLLDLGFYISISGI--VTF----KNAKSLREVVRKIPLERLLVETDSP 203 (252)
T ss_pred HHHHHHHHCCCeEeecee--Eec----CCcHHHHHHHHhCCHHHeEecccCC
Confidence 455666667776655431 111 1234577788889999999999865
No 332
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=76.11 E-value=32 Score=33.20 Aligned_cols=96 Identities=20% Similarity=0.379 Sum_probs=56.3
Q ss_pred chhHHHHHHHhhccc--ccEEee--cCcccccCChhHHHHHHHHHHh----CCce--ecC-CcHHHHHHHhCCchHHHHH
Q 025344 39 SHNVLEDIFESMGQF--VDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (254)
Q Consensus 39 g~~~~~DlLe~ag~y--ID~lKf--g~GT~~l~~~~~l~eKi~l~~~----~gV~--v~~-Gtl~E~a~~qg~~~~~~yl 107 (254)
....++.+++.+.+. +..+-| .+|=-.|.+...+++-++++++ .+|. +.| |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 445666666543321 234444 4587778777667777777654 3443 335 76653 3455
Q ss_pred HHHHHcCCCEEEec-CCcccCChhHH------------HHHHHHHHHcCCc
Q 025344 108 EDCKQVGFDTIELN-VGSLEIPEETL------------LRYVRLVKSAGLK 145 (254)
Q Consensus 108 ~~~k~lGF~~IEIS-dGti~i~~~~r------------~~lI~~~~~~G~~ 145 (254)
+.+++.|| .|-|| ||.-++-+.-| .+-|+.++++|..
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~ 168 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE 168 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC
Confidence 56677788 89999 77643322222 3466778887754
No 333
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=76.02 E-value=41 Score=31.96 Aligned_cols=168 Identities=11% Similarity=0.205 Sum_probs=98.6
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--HH--H---HH---HHhCCc-------
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--WA--E---HL---IRNGPS------- 101 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l~--E---~a---~~qg~~------- 101 (254)
++++|..|-+- +++-|.+-+++-+.++.-|+-|.+.+.++. +|+ +. + .+ +.+..+
T Consensus 5 ~k~lL~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValH 80 (307)
T PRK05835 5 GNEILLKAHKE----GYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_pred HHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 44555444332 456677777777777777777777776543 221 10 1 11 112111
Q ss_pred ----hHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 102 ----AFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 102 ----~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.=-+.+..|-++||+.|=+....++..+-- =.++++.|+..|.-|--|+|.=-+. +-+...+.. ...+|
T Consensus 81 LDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~-ed~~~~~~~-~~~~T--- 155 (307)
T PRK05835 81 LDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI-EDNISVDEK-DAVLV--- 155 (307)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCc-cCCcccccc-cccCC---
Confidence 124567788899999999976554443221 2367888999999999999984221 111000000 11133
Q ss_pred CccccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccc--cCCCccHHHHHHHHhccCC
Q 025344 176 RSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d--~~g~~r~d~i~~ii~~l~~ 230 (254)
|| ++++++++ -|+|..=|== -|.|. ..-+++-+.+++|-+.++.
T Consensus 156 -------dP----eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~i 205 (307)
T PRK05835 156 -------NP----KEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNI 205 (307)
T ss_pred -------CH----HHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCC
Confidence 44 45555554 4888754432 28998 4457999999999887653
No 334
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=76.00 E-value=9.4 Score=34.10 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
+....|...|+.+|++.|=+- +|+...-. .++|+++++. ...+..=+|+
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~~~~~Pv~vGGGI------------------------- 185 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKKASGIPLIVGGGI------------------------- 185 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHHhhCCCEEEeCCC-------------------------
Confidence 347789999999999976554 45532222 5566666653 1222222222
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
+| .++++.-+++|||.|++
T Consensus 186 ----rs----~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 186 ----RS----PEIAYEIVLAGADAIVT 204 (205)
T ss_pred ----CC----HHHHHHHHHcCCCEEEe
Confidence 12 56777778999999987
No 335
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.99 E-value=14 Score=34.99 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhC-CceecCC---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 025344 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (254)
Q Consensus 70 ~~l~eKi~l~~~~-gV~v~~G---tl~E~a~~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 126 (254)
..+.+.++-.|+. |..+.-| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888888875 4332223 233321 1111 12335556666778 999999998764
No 336
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=75.97 E-value=27 Score=30.71 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
..-+..+.+.+.|++.+-+=|=+..... ..-.+.|+.+.+. +++..- ++ + |
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-------~~~~l~---v~--G----------------G 84 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-------VGVPVQ---LG--G----------------G 84 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-------cCCcEE---Ec--C----------------C
Confidence 3445555667789999988876654422 3445566666552 222111 11 0 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEe
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 236 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifE 236 (254)
..| .+.++..+++||+.|++-+.-+. +.+.+.++.+.++.++++.=
T Consensus 85 i~~----~~~~~~~~~~Ga~~v~iGs~~~~------~~~~~~~i~~~~g~~~i~~s 130 (241)
T PRK13585 85 IRS----AEDAASLLDLGVDRVILGTAAVE------NPEIVRELSEEFGSERVMVS 130 (241)
T ss_pred cCC----HHHHHHHHHcCCCEEEEChHHhh------ChHHHHHHHHHhCCCcEEEE
Confidence 112 56677888999999999654322 35778888888888888753
No 337
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=75.71 E-value=44 Score=32.10 Aligned_cols=114 Identities=17% Similarity=0.285 Sum_probs=70.4
Q ss_pred cCChhHHHHHHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEe-cCCcccCChhHHHHHHHHHHH
Q 025344 66 LMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIEL-NVGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 66 l~~~~~l~eKi~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEI-SdGti~i~~~~r~~lI~~~~~ 141 (254)
+++.+.+.+.++.+.+.|| .+. +|| |-.+.. .+.+.++.++++ |+..|-| +||+. ++ +.++..++
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tGG--EPllr~---dl~eli~~l~~~~gi~~i~itTNG~l-L~-----~~~~~L~~ 157 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTGG--EPTLRK---DIEDICLQLSSLKGLKTLAMTTNGIT-LS-----RKLPRLKE 157 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECC--CCcchh---hHHHHHHHHHhcCCCceEEEeeCcch-HH-----HHHHHHHh
Confidence 4555678889999999998 333 465 444444 588999999998 9976654 68876 22 12456677
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 142 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 142 ~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.|+. .+.+.-.. . +++.-..++ +..+.+..++.++..+++|-..|.|..
T Consensus 158 aGld---~VnISLDs--l----~~e~~~~it-------r~~~~~~vl~~I~~a~~~G~~~vkin~ 206 (373)
T PLN02951 158 AGLT---SLNISLDT--L----VPAKFEFLT-------RRKGHDRVLESIDTAIELGYNPVKVNC 206 (373)
T ss_pred CCCC---eEEEeecc--C----CHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7765 34442111 0 111000111 112468889999999999976666554
No 338
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=75.68 E-value=13 Score=34.48 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 025344 72 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
|++|+.- | .+..|+|.... + ....+.+...|||.|-|.-=--.++.++...+|+.++..|..++.-+-
T Consensus 9 lk~~L~~----G-~~~~G~~~~~~---s----p~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRK----G-EVQIGLWLSST---T----SYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHc----C-CceEEEEecCC---C----cHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 6666543 3 23346665221 1 244556678899999999999999999999999999987765533211
Q ss_pred eecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 152 VMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 152 ~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
. . | -..+++.||+||+=||+
T Consensus 77 ~----------~-------------------~----~~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 77 E----------G-------------------S----KPLIKQVLDIGAQTLLI 96 (267)
T ss_pred C----------C-------------------C----HHHHHHHhCCCCCeeEe
Confidence 1 1 1 24568899999999987
No 339
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=75.67 E-value=14 Score=36.14 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=82.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g--- 99 (254)
+..+.=|-+.+-++..++++++..-.+.++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. |
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445555433226789999999888876532211112234566666899999999999 77778 675554422 2
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+.+.+-++.+++.||+. +-+.-|.=.-+.++..+-++.+.+.|..-++
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~ 237 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIA 237 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 123666788889999984 5566677777888888899999998765443
No 340
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=75.60 E-value=18 Score=31.56 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+++|++.++++|++.|-|+| .-+++.+++.|..
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~~ 36 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGPD 36 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCCC
Confidence 689999999999999999998 6888889998443
No 341
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.45 E-value=14 Score=33.12 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCcEEEEeccccc
Q 025344 188 IRRAERCLEAGADMIMIDSDDVC 210 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~ 210 (254)
-++++..+++|||-|++=+ .++
T Consensus 197 ~e~i~~~~~~gaD~vvvGS-ai~ 218 (244)
T PRK13125 197 PEDARDALSAGADGVVVGT-AFI 218 (244)
T ss_pred HHHHHHHHHcCCCEEEECH-HHH
Confidence 4677777899999998864 454
No 342
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=75.44 E-value=42 Score=30.44 Aligned_cols=137 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCCh---hHHHHHHHHHHhCCc----eecCCcHHHHHHHhCC
Q 025344 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK---PFIEEVVKRAHQHDV----YVSTGDWAEHLIRNGP 100 (254)
Q Consensus 28 ~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~---~~l~eKi~l~~~~gV----~v~~Gtl~E~a~~qg~ 100 (254)
||.+|- ++++.+.+.-+++| .++.+ ..+.+-|+.+|++|+ -+.|+|-+|
T Consensus 67 Mv~~P~-------~~i~~~~~aGad~i----------t~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~------- 122 (229)
T PRK09722 67 MVTDPQ-------DYIDQLADAGADFI----------TLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVE------- 122 (229)
T ss_pred EecCHH-------HHHHHHHHcCCCEE----------EECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHH-------
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH---HcCCccccee--eeecCCCCCCCccccccccccccCC
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK---SAGLKAKPKF--AVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~---~~G~~v~~E~--g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.++.|+..+..+=+=.||---|--..-++...++-+.-+ ++|+.+.-|+ |++
T Consensus 123 -~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~---------------------- 179 (229)
T PRK09722 123 -SIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN---------------------- 179 (229)
T ss_pred -HHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC----------------------
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHH
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 224 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~i 224 (254)
-+.+....+|||+.+++=+.++|.++.+ ..+.++.+
T Consensus 180 ------------~~~i~~~~~aGad~~V~Gss~iF~~~~d-~~~~i~~l 215 (229)
T PRK09722 180 ------------QKTYEKLMEAGADVFIVGTSGLFNLDED-IDEAWDIM 215 (229)
T ss_pred ------------HHHHHHHHHcCCCEEEEChHHHcCCCCC-HHHHHHHH
No 343
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=75.36 E-value=23 Score=32.76 Aligned_cols=94 Identities=11% Similarity=0.139 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
-++.+.-++.|++.+-|=|= ... -.++|+.+.+. ++++. .+| +.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~~-------~~~~v---~vG--GG------------------- 84 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALHA-------YPGGL---QVG--GG------------------- 84 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHHh-------CCCCE---EEe--CC-------------------
Confidence 34555667889999988665 444 44677776662 22210 111 11
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEec
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEA 237 (254)
+. .+.+++.|++||++|+|=+.-+. +..+..+.++++.++.|.++|+.=-
T Consensus 85 Ir--~e~v~~~l~aGa~rVvIGS~av~--~~~i~~~~~~~i~~~fG~~~Ivvsi 134 (253)
T TIGR02129 85 IN--DTNAQEWLDEGASHVIVTSWLFT--KGKFDLKRLKEIVSLVGKDRLIVDL 134 (253)
T ss_pred cC--HHHHHHHHHcCCCEEEECcHHHh--CCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 21 38899999999999999554333 3356789999999999988887643
No 344
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.06 E-value=21 Score=33.64 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
...+.++.+-+.|.+.|+|+-..- +.+...++|+.+++.+ |++-+-.+ .+ .
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~----p~v~Vi~G--~v-----------~---------- 144 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKY----PNVDVIAG--NV-----------V---------- 144 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHC----CCceEEEC--CC-----------C----------
Confidence 456778888889999999865332 1255678899888864 12222101 11 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 182 EDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+ .+.++..++||||.|++.
T Consensus 145 -t----~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 145 -T----AEAARDLIDAGADGVKVG 163 (325)
T ss_pred -C----HHHHHHHHhcCCCEEEEC
Confidence 1 677888899999999984
No 345
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=75.04 E-value=14 Score=34.92 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=77.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCccc-ccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHH-HhCC-
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLI-RNGP- 100 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~-~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~-~qg~- 100 (254)
|..+.=|=+.+-+...++++++....+.++- .+.-.+ -.-|..+=.++++.++++|| .++.| ++=+..+ .-|+
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6677766443226788999998887776421 111122 23445455789999999999 77777 5644333 2231
Q ss_pred ---chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 101 ---SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
+.+.+-++.+++.||+.| -+.-|.-.-+.++..+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 235556778889999855 446777677788888889999987754
No 346
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=74.91 E-value=17 Score=35.17 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=78.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C---
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g--- 99 (254)
|.-++-|-+...++..++.+++..-.+++..+-.-=|.-.-|..+=.++++.++++|| .++-| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4455545333227789999999988876543222222334566666799999999999 78878 676666533 2
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 2235566778899999854 444555555667777778888886654
No 347
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.85 E-value=50 Score=31.65 Aligned_cols=165 Identities=13% Similarity=0.197 Sum_probs=106.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----------CC-cHHHHHH------HhC----
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----------TG-DWAEHLI------RNG---- 99 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----------~G-tl~E~a~------~qg---- 99 (254)
..++++|..|-+. +++-|.+-+++-+.++.-|+-|.+.+-++- .| ++++.+. .+.
T Consensus 10 v~~k~lL~~A~~~----~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~ 85 (321)
T PRK07084 10 VNTREMFAKAVKG----GYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCP 85 (321)
T ss_pred cCHHHHHHHHHHC----CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCC
Confidence 4677777776553 667788888888888888888888776542 22 2344322 110
Q ss_pred -C-------chHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc--
Q 025344 100 -P-------SAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF-- 167 (254)
Q Consensus 100 -~-------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~-- 167 (254)
| ..=-+.+..|-+.||+.|=|....+++.+-- =.++++.|...|.-|--|+|.=.+. .|...
T Consensus 86 VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~------ed~~~~~ 159 (321)
T PRK07084 86 IPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGV------EDEVSAE 159 (321)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc------cCCccCc
Confidence 0 0124577888999999999987665444322 2378888999999999999984221 12100
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec---cccccc-----CCCccHHHHHHHHhcc
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKH-----ADSLRADIIAKVIGRL 228 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~-----~g~~r~d~i~~ii~~l 228 (254)
...+| ||++..+.+++ -|+|.+-+== -|.|.. .-+++-|.+++|-+.+
T Consensus 160 ~~~~T----------~peeA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 160 HHTYT----------QPEEVEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred ccccC----------CHHHHHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 01122 55554444443 4888776543 389986 3469999999998877
No 348
>PRK05660 HemN family oxidoreductase; Provisional
Probab=74.80 E-value=18 Score=34.64 Aligned_cols=119 Identities=12% Similarity=0.076 Sum_probs=82.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC-Cc
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG-PS 101 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~-qg-~~ 101 (254)
|.-+.=|=+.+-+...++++++....+.++.+-.==|.-.-|..+-.++++.++++|| .++-| ++-...+. -| +.
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5556656443335688999999988876543211112233456677899999999999 78878 66554442 12 12
Q ss_pred ---hHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 102 ---AFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 102 ---~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+-++.+++.||+ .+-+.-|.=.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 345567788999997 47778888788888999999999987644
No 349
>PRK09061 D-glutamate deacylase; Validated
Probab=74.63 E-value=20 Score=35.84 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=69.5
Q ss_pred HHHHHH---hhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC----CcHHH-HHHHhCCchHHHHHHHHHHcC
Q 025344 43 LEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GDWAE-HLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 43 ~~DlLe---~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----Gtl~E-~a~~qg~~~~~~yl~~~k~lG 114 (254)
++++++ .+| ++++|.+-+-..-.+.+.|.+-.+.+++||..+.. .++.. .+... .+++.++.+++.|
T Consensus 171 m~~ll~~al~~G--a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~---av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEG--ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD---AYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCC--CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH---HHHHHHHHHHHhC
Confidence 455554 234 58888753222234777899999999999998754 12311 11111 5788999999999
Q ss_pred CCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 115 FDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 115 F~~IEISdGti--~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
+. +-||-=+. ..+..+-+++|+++++.|..|..|+-.-
T Consensus 246 ~r-v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 246 AH-MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred CC-EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 75 45542111 1244667899999999999999999653
No 350
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=74.57 E-value=16 Score=32.21 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=63.9
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
......++++..++|+|++|+|+.- +.. ...+-++.+++.+..+..- =+..+ |+-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l--~~~--~g~~~i~~l~~~~~~i~~DlK~~DI-----g~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLEL--FEA--AGPEIVKELRELGFLVFLDLKLGDI-----PNTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHH--HHh--cCHHHHHHHHHCCCcEEEEeecCch-----HHHHHHHHHHHHhcCCCE
Confidence 4568889999999999999999754 332 2567777888877655542 13222 124455666667789999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
+-|+- ....+....+++.+++++
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~ 102 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKG 102 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccC
Confidence 99984 455677777777777544
No 351
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=74.56 E-value=38 Score=33.17 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
.+.++..+++||+.+++ +|.||.+.. ..+.++++.+.+
T Consensus 341 ~eti~~l~~aGADivVV-GsaIf~a~D--p~~aak~l~~~i 378 (391)
T PRK13307 341 VENVEEALKAGADILVV-GRAITKSKD--VRRAAEDFLNKL 378 (391)
T ss_pred HHHHHHHHHcCCCEEEE-eHHHhCCCC--HHHHHHHHHHhh
Confidence 45577888999998766 677997543 344455555544
No 352
>PRK09234 fbiC FO synthase; Reviewed
Probab=74.53 E-value=43 Score=35.98 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=84.2
Q ss_pred HHHHHHHhhccccc----EEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHH---HhCCchHHHHHHHHHH
Q 025344 42 VLEDIFESMGQFVD----GLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (254)
Q Consensus 42 ~~~DlLe~ag~yID----~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~---~qg~~~~~~yl~~~k~ 112 (254)
..+++++.+-+..+ =+-+-.|...-++.+.+.+.++..|+. +|.+..=+-.|+.+ .-| -..++|++.+|+
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~Lke 636 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALRE 636 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 34555555443322 234435665545666677778878775 56665445566653 223 358999999999
Q ss_pred cCCCEE-----EecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 113 VGFDTI-----ELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 113 lGF~~I-----EISdGt-------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.|.+.+ ||-+-- -.++.++|++.|+.+++.|+++-+ |..++.-
T Consensus 637 AGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~s--tmm~G~~----------------------- 691 (843)
T PRK09234 637 AGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSS--TMMYGHV----------------------- 691 (843)
T ss_pred hCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCccc--ceEEcCC-----------------------
Confidence 999988 222220 145788999999999999998776 3333321
Q ss_pred ccCHHHHHHHHHHHHHcCCc
Q 025344 181 VEDVDLLIRRAERCLEAGAD 200 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~ 200 (254)
++++++++.+..--+-+.+
T Consensus 692 -Et~edrv~hl~~LreLq~~ 710 (843)
T PRK09234 692 -DTPRHWVAHLRVLRDIQDR 710 (843)
T ss_pred -CCHHHHHHHHHHHHhcCcc
Confidence 2477888888776666653
No 353
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=74.53 E-value=59 Score=28.48 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=60.6
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCcee----cCC-----------
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----STG----------- 89 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v----~~G----------- 89 (254)
++..+.+-|. . .+..++.+++.- +|.+ -.||+.+-+++.+++-++.+.+..|.+ ..|
T Consensus 74 ~~pv~~~ggi--~-~~~d~~~~~~~G---~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~ 145 (232)
T TIGR03572 74 FMPLTVGGGI--R-SLEDAKKLLSLG---ADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSD 145 (232)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHcC---CCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEEC
Confidence 4556666665 2 334444454432 3333 456888888888888877664332332 222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHc
Q 025344 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA 142 (254)
Q Consensus 90 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~ 142 (254)
+|.+. ......++.+.+.+.|++.|.+++=+-+ .+. -..++++++++.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~ 195 (232)
T TIGR03572 146 NGRRA----TGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDA 195 (232)
T ss_pred CCccc----CCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhh
Confidence 22111 1124668889999999999999972221 111 125777777763
No 354
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=74.44 E-value=17 Score=31.88 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=53.1
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
.+....++++..++|+|++|+|+--..-+..+ -++.+++.+..+..-- +..+ ++.+..|.+.+.++|.|+
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~----~v~~l~~~~~~v~lD~K~~Di-----g~t~~~~~~~~~~~gad~ 79 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGDK----IIDELAKLNKLIFLDLKFADI-----PNTVKLQYESKIKQGADM 79 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCHH----HHHHHHHcCCCEEEEEeecch-----HHHHHHHHHHHHhcCCCE
Confidence 56778889999999999999998655544443 4444555453332110 1111 113445555556677777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcC
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
|-|+- ..+.+.-..+++.+++.|
T Consensus 80 vTvh~---~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 80 VNVHG---VAGSESVEAAKEAASEGG 102 (213)
T ss_pred EEEcC---CCCHHHHHHHHHHhhcCC
Confidence 76663 333444445555555544
No 355
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=74.31 E-value=12 Score=33.75 Aligned_cols=74 Identities=23% Similarity=0.191 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
++.+..|-..++.+||..|=+. ++-...+ .++|+++++. +..+...+|++
T Consensus 134 ~e~~~ayA~aae~~g~~ivyLe-~SG~~~~---~e~I~~v~~~~~~~pl~vGGGIr------------------------ 185 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLE-YSGAYGP---PEVVRAVKKVLGDTPLIVGGGIR------------------------ 185 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEeC-CCCCcCC---HHHHHHHHHhcCCCCEEEeCCCC------------------------
Confidence 4457889999999999998887 5444433 3556666553 45566566662
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
| .++++..++||||.|++ +.-+++
T Consensus 186 -----s----~e~a~~l~~aGAD~VVV-Gsai~~ 209 (219)
T cd02812 186 -----S----GEQAKEMAEAGADTIVV-GNIVEE 209 (219)
T ss_pred -----C----HHHHHHHHHcCCCEEEE-CchhhC
Confidence 1 67888889999999999 333444
No 356
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=74.11 E-value=35 Score=31.03 Aligned_cols=81 Identities=5% Similarity=-0.012 Sum_probs=43.4
Q ss_pred CCccccccccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHH
Q 025344 1 MSGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH 80 (254)
Q Consensus 1 ~~~~~~~~~~f~~l~~R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~ 80 (254)
|-|-|--+-+|.|---+.-++ ++.+|-++=+..+.++++.+.+.-+++|-+- +-. ...+.+-++..|
T Consensus 47 MDG~FVPNitfGp~~i~~i~~-----~~~~DvHLMv~~P~~~i~~~~~aGad~It~H-------~Ea-~~~~~~~l~~Ik 113 (228)
T PRK08091 47 ADGQFSPFFTVGAIAIKQFPT-----HCFKDVHLMVRDQFEVAKACVAAGADIVTLQ-------VEQ-THDLALTIEWLA 113 (228)
T ss_pred cCCCcCCccccCHHHHHHhCC-----CCCEEEEeccCCHHHHHHHHHHhCCCEEEEc-------ccC-cccHHHHHHHHH
Confidence 345555666665422222211 3446666633324467777777666665331 110 123677788888
Q ss_pred hCCc------eecCCcHHHH
Q 025344 81 QHDV------YVSTGDWAEH 94 (254)
Q Consensus 81 ~~gV------~v~~Gtl~E~ 94 (254)
++|+ -+.|+|-+|.
T Consensus 114 ~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 114 KQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred HCCCCceEEEEECCCCCHHH
Confidence 8876 5667776553
No 357
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=73.92 E-value=13 Score=36.29 Aligned_cols=97 Identities=6% Similarity=0.024 Sum_probs=61.6
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~y-l~~~k~lGF~ 116 (254)
.+.....+++..+++ ++++|+|+--..-+..+.+++.-+...+ ..+.. ... .. ....| ++.+.+.|.+
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~----DLK-~~---Di~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVA----DLK-TL---DTGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEE----Eec-cc---ChhhHHHHHHHhcCCC
Confidence 667888899999999 9999999876666665555554443211 11111 111 11 12334 6677888888
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.+-|.-- -+.+.-.+.++.+++.|.++.-
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEEEE
Confidence 8888853 2455567788888888865433
No 358
>PRK15447 putative protease; Provisional
Probab=73.87 E-value=38 Score=31.54 Aligned_cols=90 Identities=21% Similarity=0.143 Sum_probs=55.4
Q ss_pred hHHHHHHHhhcc-cccEEeecCccccc---CChhHHHHHHHHHHhCCceecCCc--HHHHHHHhCCchHHHHHHHHHHcC
Q 025344 41 NVLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 41 ~~~~DlLe~ag~-yID~lKfg~GT~~l---~~~~~l~eKi~l~~~~gV~v~~Gt--l~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
..++|+....++ -+|-+=+|...... +..+.+++-++.+|++|..+|.-+ .+.. .. .++.+.+.++ .|
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~---~~--e~~~l~~~l~-~~ 88 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEA---PS--ELKELRRLVE-NG 88 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccC---HH--HHHHHHHHHh-cC
Confidence 456666665544 58888888654332 455679999999999999877532 2110 11 3333333222 37
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 025344 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (254)
.+.|.|+| ...+..+++.|+.+
T Consensus 89 ~~~v~v~d----------~g~l~~~~e~~~~l 110 (301)
T PRK15447 89 EFLVEAND----------LGAVRLLAERGLPF 110 (301)
T ss_pred CCEEEEeC----------HHHHHHHHhcCCCE
Confidence 77888877 45566666666654
No 359
>PLN02858 fructose-bisphosphate aldolase
Probab=73.81 E-value=41 Score=38.05 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=114.4
Q ss_pred CCceeEecCCCCCCcch---------------hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec-
Q 025344 24 FGVTEMRSPHYTLSSSH---------------NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS- 87 (254)
Q Consensus 24 ~GlT~V~DkG~~~~~g~---------------~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~- 87 (254)
.|+-.|.=||- +... ..++++|..|-+ =+++-|.+.+++-+.++.-|+-|.+.+.++.
T Consensus 1070 ~glpvVtk~G~--~G~~~tL~~~~~~l~~~~~v~~~~~l~~A~~----~~yav~afn~~n~e~~~avi~aAe~~~sPvIl 1143 (1378)
T PLN02858 1070 PGVPYIVFPGN--VGDSTALAEVVKSWARPARSSTKELLLNAEK----GGYAVGAFNVYNLEGIEAVVAAAEAEKSPAIL 1143 (1378)
T ss_pred CCCcEEEeCCc--CCChHHHHHHHHHhcCcCCccHHHHHHHHHH----CCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEE
Confidence 47777777775 3112 234555555433 2578889999999999999999998887543
Q ss_pred ---CCcH-------HHHH--HHhC----------CchHHHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcC
Q 025344 88 ---TGDW-------AEHL--IRNG----------PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAG 143 (254)
Q Consensus 88 ---~Gtl-------~E~a--~~qg----------~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~G 143 (254)
+|+. ...+ +.+. -..=.+.+..|-+.||+.|=|.--.+++.+--+ .+++++|...|
T Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~g 1223 (1378)
T PLN02858 1144 QVHPGALKQGGIPLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKG 1223 (1378)
T ss_pred ECCccHHhhcCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3322 1111 1111 001246788888999999999766554433222 36788889999
Q ss_pred CcccceeeeecCCCCCCCcccc-c---cccccccCCCccccccCHHHHHHHHHHHHH-cCCcEEEEec---cccccc-CC
Q 025344 144 LKAKPKFAVMFNKSDIPSDRDR-A---FGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKH-AD 214 (254)
Q Consensus 144 ~~v~~E~g~k~~~s~v~~~~d~-~---~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~-~g 214 (254)
.-|--|+|.=-+ .+|. . ....+| || ++++++++ -|+|..-+== -|+|.. .-
T Consensus 1224 v~VEaElG~v~g------~e~~~~~~~~~~~~T----------~p----~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p 1283 (1378)
T PLN02858 1224 LMVEAELGRLSG------TEDGLTVEEYEAKLT----------DV----DQAKEFIDETGIDALAVCIGNVHGKYPASGP 1283 (1378)
T ss_pred CEEEEEecccCC------ccCCccccccccCCC----------CH----HHHHHHHHhcCCcEEeeecccccccCCCCCC
Confidence 999999998422 1121 0 001122 44 55566664 4888876643 399986 57
Q ss_pred CccHHHHHHHHhcc
Q 025344 215 SLRADIIAKVIGRL 228 (254)
Q Consensus 215 ~~r~d~i~~ii~~l 228 (254)
+++-|.+.+|-+.+
T Consensus 1284 ~l~~~~l~~i~~~~ 1297 (1378)
T PLN02858 1284 NLRLDLLKELRALS 1297 (1378)
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999877
No 360
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=73.43 E-value=17 Score=33.45 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=49.5
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 110 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 110 ~k~lGF~~IEISdG----------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
+.+.||++|=+.|+ +..++.++.+..++.+.+. .+.+. + --|-.|+.+.
T Consensus 28 ~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~---------~~~p~--v--iaD~~fg~y~-------- 86 (254)
T cd06557 28 ADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRG---------APRAL--V--VADMPFGSYQ-------- 86 (254)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhc---------CCCCe--E--EEeCCCCccc--------
Confidence 45679999976544 2367888888888887762 11110 0 0111111111
Q ss_pred cccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 025344 180 YVEDVDLLIRRAERCLE-AGADMIMIDSD 207 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLe-AGA~~ViiEar 207 (254)
.++++.++.+.+.++ |||+.|-||..
T Consensus 87 --~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 87 --TSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred --CCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 258999999999999 99999999984
No 361
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.30 E-value=44 Score=30.13 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC----cc-----cCChhHHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG----SL-----EIPEETLLRYVRLVK 140 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG----ti-----~i~~~~r~~lI~~~~ 140 (254)
+.+++..++.++.|+.++.- -| ..-++.++.+|+.|++.|-++-- +. .-+.+++.+.++.++
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~--------~g-~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~ 168 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCAT--------LG-LLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAK 168 (296)
T ss_pred HHHHHHHHHHHhCCCeEEec--------CC-CCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHH
Confidence 36777777778888866421 11 12267888999999998544311 11 235578889999999
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec----cc--ccccCC
Q 025344 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS----DD--VCKHAD 214 (254)
Q Consensus 141 ~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa----rg--i~d~~g 214 (254)
+.|+++.+-+=+ +.. . +.+++++.+..-.+.|.+.|-+-. .| +.+ ..
T Consensus 169 ~~Gi~v~~~~i~--Gl~-----e-------------------t~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~-~~ 221 (296)
T TIGR00433 169 KAGLKVCSGGIF--GLG-----E-------------------TVEDRIGLALALANLPPESVPINFLVKIKGTPLAD-NK 221 (296)
T ss_pred HcCCEEEEeEEE--eCC-----C-------------------CHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCC-CC
Confidence 999986654222 110 0 366777777777778988764332 22 333 22
Q ss_pred CccHH-H---HHHHHhccCCCceEEecCCc----hhHHHHHHHhCCC
Q 025344 215 SLRAD-I---IAKVIGRLGLEKTMFEATNP----RTSEWFIRRYGPK 253 (254)
Q Consensus 215 ~~r~d-~---i~~ii~~l~~~klifEAP~k----~qQ~~~I~~~Gp~ 253 (254)
.+..+ . +......+|...|..-+..+ +.+......+|.|
T Consensus 222 ~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n 268 (296)
T TIGR00433 222 ELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGAN 268 (296)
T ss_pred CCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCc
Confidence 33332 2 22222445666676666554 3333334555554
No 362
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=73.19 E-value=56 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCcEEEEecccccccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
.+.++..+++||+.|++= +.|++.+
T Consensus 169 ~~~i~~~~~~Gad~vvvG-sai~~~~ 193 (202)
T cd04726 169 PDTLPEFKKAGADIVIVG-RAITGAA 193 (202)
T ss_pred HHHHHHHHhcCCCEEEEe-ehhcCCC
Confidence 356788899999998885 4477643
No 363
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=73.11 E-value=97 Score=30.33 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=76.8
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------- 125 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------- 125 (254)
+..+=|.-.+.... .+.+++..+..++.|+....-+ .-+ .-++.++.+++.||+.|.+.--|.
T Consensus 246 ~~~i~f~Dd~f~~~-~~~~~~l~~~l~~~~i~~~~~~------~~~--~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~ 316 (472)
T TIGR03471 246 VREFFFDDDTFTDD-KPRAEEIARKLGPLGVTWSCNA------RAN--VDYETLKVMKENGLRLLLVGYESGDQQILKNI 316 (472)
T ss_pred CcEEEEeCCCCCCC-HHHHHHHHHHHhhcCceEEEEe------cCC--CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 44555666665543 4457888888888887443211 011 236789999999999998876555
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEE
Q 025344 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 203 (254)
Q Consensus 126 --~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vi 203 (254)
..+.++-.+.|+.+++.|+.+...|=+=++. ++.+++.+.++-..+.+.+.+.
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg-------------------------et~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTFILGLPG-------------------------ETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCC-------------------------CCHHHHHHHHHHHHhcCCCcee
Confidence 3566777889999999999877665441111 1366666777766777877665
Q ss_pred E
Q 025344 204 I 204 (254)
Q Consensus 204 i 204 (254)
+
T Consensus 372 ~ 372 (472)
T TIGR03471 372 V 372 (472)
T ss_pred e
Confidence 4
No 364
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=72.92 E-value=11 Score=33.68 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCceecC--CcH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~--Gtl----~E~a~~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (254)
..+...++.+|++|+++.+ |+| +..++ .++. -++.-++.+++.|||.|.|.--....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 3477888999999998875 543 22222 1111 36788889999999999997655444456667777777
Q ss_pred HH
Q 025344 140 KS 141 (254)
Q Consensus 140 ~~ 141 (254)
++
T Consensus 125 r~ 126 (253)
T cd06545 125 YA 126 (253)
T ss_pred HH
Confidence 76
No 365
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=72.90 E-value=4.9 Score=35.65 Aligned_cols=156 Identities=16% Similarity=0.204 Sum_probs=87.4
Q ss_pred HHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec-----C-Cc-HHHHHHHhCCchHHHHHHHHHHcC
Q 025344 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-GD-WAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~-----~-Gt-l~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
.++.+++.+-+| ++.+-.+.| ..++.--+.+...++.++ | |+ +.+.-... ..-.=.+++.++|
T Consensus 20 ~~~~~~~~a~~~------~~~av~v~p-~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~---~~~~~ve~A~~~G 89 (236)
T PF01791_consen 20 DIKKLCREAIEY------GFDAVCVTP-GYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYD---QIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHHHHHHHHH------TSSEEEEEG-GGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCE---EEHHHHHHHHHTT
T ss_pred hHHHHHHHHHHh------CCCEEEECH-HHHHHHHHHhhccccccceEEEeCCCCCcccccccc---chHHHHHHHHHcC
Confidence 556666666655 555555554 456666555555444332 3 43 55543111 1133467789999
Q ss_pred CCEEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 115 FDTIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 115 F~~IEISdGti-------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
-|.|.+--..- +--.++-.++++.+.+.|++++-| ..-.+. ++ .+ ..+++.+
T Consensus 90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~-~~---~~----------------~~~~~~I 148 (236)
T PF01791_consen 90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGE-EV---AD----------------EKKPDLI 148 (236)
T ss_dssp -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHH-HB---SS----------------TTHHHHH
T ss_pred CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCch-hh---cc----------------cccHHHH
Confidence 99999854442 222245557777888889999999 552111 11 00 0036778
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..-++-..++|||+|=+..-+- .....-....+.+++...+
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 8888888999999999987622 1111112344555665444
No 366
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=72.68 E-value=17 Score=35.57 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-Cc
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g-~~ 101 (254)
|..+.=|-+.+..+..++++++.+..+.++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. + ..
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445445433225788999999887765432100012224455556799999999999 77767 665444421 1 12
Q ss_pred ---hHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 102 ---AFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 102 ---~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+-++.+++.||+ .+-+.-|.=.-+.++..+.++.+.+.|..
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~ 233 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPD 233 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCC
Confidence 355677788899997 45566777778888899999999998765
No 367
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=72.64 E-value=14 Score=35.79 Aligned_cols=83 Identities=19% Similarity=0.127 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHcCCCEEEec---CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELN---VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS---dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.+.+-+.++-.=|.|.|-.. ...--+|.++|.+++..+.+. +..|-|.+-.. -..++
T Consensus 142 ~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~---a~~eTG~~~~y-----------~~Nit------ 201 (364)
T cd08210 142 ELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAE---ANAETGGRTLY-----------APNVT------ 201 (364)
T ss_pred HHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHH---HHhhcCCcceE-----------EEecC------
Confidence 45555666677899999433 344578999999998888772 22233332110 01121
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
-+..+++++++...++||+.||+---
T Consensus 202 ---a~~~em~~ra~~a~~~Ga~~vMv~~~ 227 (364)
T cd08210 202 ---GPPTQLLERARFAKEAGAGGVLIAPG 227 (364)
T ss_pred ---CCHHHHHHHHHHHHHcCCCEEEeecc
Confidence 24779999999999999999999863
No 368
>PLN02540 methylenetetrahydrofolate reductase
Probab=72.60 E-value=49 Score=34.07 Aligned_cols=137 Identities=13% Similarity=0.038 Sum_probs=74.7
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh---
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--- 129 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--- 129 (254)
-+|+=+-||.-.-+....|+--..+-+.+|+.+++= |- .-.+...+++.|..++++|+..|=+=.|--.-+.
T Consensus 29 P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTC----rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~ 104 (565)
T PLN02540 29 PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTC----TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKF 104 (565)
T ss_pred CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeee----cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCc
Confidence 677778888776555554544444444569977752 21 1222336888999999999998854444332221
Q ss_pred -------hHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 130 -------ETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 130 -------~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
..=..||+.+++. | ..|++--....- +.+.. .... ......+++.-++..++-++|||++
T Consensus 105 ~~~~g~F~~A~dLV~~Ir~~~g----d~f~IgVAGYPE---gHpe~-~~~~----~~~~~~~~~~dl~~Lk~KvdAGAdF 172 (565)
T PLN02540 105 VQVEGGFACALDLVKHIRSKYG----DYFGITVAGYPE---AHPDV-IGGD----GLATPEAYQKDLAYLKEKVDAGADL 172 (565)
T ss_pred CCCCCCcccHHHHHHHHHHhCC----CCceEEEeCCCC---CCCcc-cccc----cccCCCChHHHHHHHHHHHHcCCCE
Confidence 1234566666653 1 012221111100 00000 0000 0000135778899999999999999
Q ss_pred EEEec
Q 025344 202 IMIDS 206 (254)
Q Consensus 202 ViiEa 206 (254)
+|.--
T Consensus 173 iITQl 177 (565)
T PLN02540 173 IITQL 177 (565)
T ss_pred Eeecc
Confidence 99865
No 369
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=72.56 E-value=19 Score=33.56 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=61.1
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 025344 100 PSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (254)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~ 166 (254)
|+.+.+-.+.+.++|++.|.|+=|+= --.++.-.++++.+++.-= .-+.+|-- +|. +|
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~---~pvsvKiR---~g~-~~-- 135 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP---IPVSVKIR---LGW-DD-- 135 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S---SEEEEEEE---SEC-T---
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc---cceEEecc---ccc-cc--
Confidence 33455555667789999999997742 2345566677887776411 12344421 111 11
Q ss_pred cccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCccHHHHHHHHhccC
Q 025344 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~i~~ii~~l~ 229 (254)
+.++.++.++...++|++.|+|-+| .--.-.|..+.+.+.++.+.++
T Consensus 136 ----------------~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ 183 (309)
T PF01207_consen 136 ----------------SPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP 183 (309)
T ss_dssp -----------------CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T
T ss_pred ----------------chhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc
Confidence 3567899999999999999999999 2222234778888888887776
No 370
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=72.53 E-value=8.8 Score=37.08 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=44.5
Q ss_pred EeecCcccccCChhH----------------HHHHHHHHHhCCceecC--CcH--HH------------------HHHHh
Q 025344 57 LKFSGGSHSLMPKPF----------------IEEVVKRAHQHDVYVST--GDW--AE------------------HLIRN 98 (254)
Q Consensus 57 lKfg~GT~~l~~~~~----------------l~eKi~l~~~~gV~v~~--Gtl--~E------------------~a~~q 98 (254)
++.|| ||..++... -++-+++||.+||.|-. |.+ .| ..+.-
T Consensus 93 i~~GF-tSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T 171 (347)
T TIGR01521 93 IQLGF-TSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLT 171 (347)
T ss_pred HHcCC-CEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCC
Confidence 67788 555554443 47889999999997764 543 11 11122
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcc
Q 025344 99 GPSAFKEYVEDCKQVGFDTIELNVGSL 125 (254)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti 125 (254)
.-++-.+.+++.|.|++=||-||.
T Consensus 172 ---~PeeA~~Fv~~TgvD~LAvaiGt~ 195 (347)
T TIGR01521 172 ---DPEEAADFVKKTKVDALAVAIGTS 195 (347)
T ss_pred ---CHHHHHHHHHHHCcCEEehhcccc
Confidence 346666677788999999999998
No 371
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.34 E-value=23 Score=32.44 Aligned_cols=70 Identities=24% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHc--CCCEEEecCCccc---------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 025344 107 VEDCKQV--GFDTIELNVGSLE---------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 107 l~~~k~l--GF~~IEISdGti~---------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~ 175 (254)
.+.+.+. +++.|||+=|+-. -+.+...++++.+++.- -+| +.+|-. |
T Consensus 109 a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~p-v~vKi~-----------------~-- 166 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVP-VFAKLS-----------------P-- 166 (300)
T ss_pred HHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEECC-----------------C--
Confidence 3344443 3999999887643 24566778888888741 112 445421 1
Q ss_pred CccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 176 RSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+.++.++.++...++|++.|.+=
T Consensus 167 -------~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 167 -------NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred -------ChhhHHHHHHHHHHcCCCEEEEE
Confidence 24566788888889999999874
No 372
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=72.09 E-value=22 Score=30.44 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 025344 188 IRRAERCLEAGADMIMID 205 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiE 205 (254)
.+.+...+++||+.|-+=
T Consensus 154 ~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 154 LDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578888999999988763
No 373
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=72.09 E-value=15 Score=34.45 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC--CCceEEecC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 238 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~--~~klifEAP 238 (254)
.++++..+++|||.||+ +|+..+.+.+.+..+. -.++..||.
T Consensus 199 leqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaS 242 (284)
T PRK06096 199 PKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLA 242 (284)
T ss_pred HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEE
Confidence 78888899999999999 5777777777776554 246677775
No 374
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=71.57 E-value=35 Score=32.19 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred EeecCcccccCChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (254)
.|=|+|++.+..++.+.+.++-.+++ +++|+- - +|-... .. ...-++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 665553 2 332111 11 1456888999999999999999984
Q ss_pred ----cCChhHHHHHHHHHHH
Q 025344 126 ----EIPEETLLRYVRLVKS 141 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~ 141 (254)
.++.-++ +.|+++++
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~ 191 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKK 191 (318)
T ss_pred cccccCCchhH-HHHHHHHH
Confidence 1233244 67887777
No 375
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=71.46 E-value=8.1 Score=36.05 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHcCCcc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti------------~i~~~~r~~lI~~~~~~G~~v 146 (254)
+..++|++.|.++||++|-|.+|=- ..+..+..++|+.+++.|-.|
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi 89 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI 89 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE
Confidence 3689999999999999999999874 578888999999999997544
No 376
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=71.27 E-value=12 Score=32.22 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=51.1
Q ss_pred HHHHHHhCCc-eec-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 025344 75 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 75 Ki~l~~~~gV-~v~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v 146 (254)
..++++++|| .+. .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++..+..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3556778999 444 477888888774 3344567999999999999999999999999999877654
No 377
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=71.27 E-value=19 Score=34.06 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=45.7
Q ss_pred EeecCcccccCChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 025344 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 57 lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
.|=|+|++++-..+.+.+.++-+++. ++++.- .+|-+. .......++++.+.+.|.++|.|+..+
T Consensus 106 ~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~---~t~~~~~~~~~~l~~aG~d~i~vh~Rt 174 (333)
T PRK11815 106 QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ---DSYEFLCDFVDTVAEAGCDTFIVHARK 174 (333)
T ss_pred cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC---cCHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 36788999999999999999999874 554442 122210 000135678888999999999998654
No 378
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=71.25 E-value=45 Score=29.01 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC---------cHH
Q 025344 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---------DWA 92 (254)
Q Consensus 22 R~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G---------tl~ 92 (254)
+..++..+.+=|. . .+..++.+++...+ +.-.||+.+-+++.+++.++.+.+. +.++-- +|-
T Consensus 71 ~~~~~pv~~~GGI--~-~~ed~~~~~~~Ga~-----~vilg~~~l~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 71 KAVDIPVQVGGGI--R-SLETVEALLDAGVS-----RVIIGTAAVKNPELVKEACKKFPGK-IVVGLDARDGKVATDGWL 141 (233)
T ss_pred HHCCCCEEEcCCc--C-CHHHHHHHHHcCCC-----EEEECchHHhCHHHHHHHHHHhCCC-ceeeeeccCCEEEEccCe
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH-HHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccc
Q 025344 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL-LRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAY 170 (254)
Q Consensus 93 E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r-~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~ 170 (254)
+.. .. ...++.+.+.++|++.|=+-+-+-+-...-- .++|+.+++. ...++..-|+ .+
T Consensus 142 ~~~--~~--~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi---~~------------- 201 (233)
T PRK00748 142 ETS--GV--TAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGV---SS------------- 201 (233)
T ss_pred ecC--CC--CHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCC---CC-------------
Q ss_pred cccCCCccccccCHHHHHHHHHHHHHcC-CcEEEE
Q 025344 171 VARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMI 204 (254)
Q Consensus 171 ~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~Vii 204 (254)
.+.++..++.| |+-||+
T Consensus 202 -----------------~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 202 -----------------LDDIKALKGLGAVEGVIV 219 (233)
T ss_pred -----------------HHHHHHHHHcCCccEEEE
No 379
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=71.22 E-value=38 Score=32.91 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHc-CCccc
Q 025344 71 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSA-GLKAK 147 (254)
Q Consensus 71 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~lI~~~~~~-G~~v~ 147 (254)
.+.+-++.++++|+.+.+|- + ++..-.+.++.+.++|.|+|-+.-|+- ..+. .-.+.++++++. ++.+.
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~-----~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~iPI~ 166 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADL-----I--NVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVSIPIA 166 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEe-----c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCCCcEE
Confidence 35677778888887665541 1 111112234566778999997776642 1111 112455665542 12222
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHH--HHHHHH
Q 025344 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD--IIAKVI 225 (254)
Q Consensus 148 ~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d--~i~~ii 225 (254)
...|+ + .+.+...+++||+.|++ ++.||++. +++.- .+.+.+
T Consensus 167 a~GGI------------------------------~----~~n~~~~l~aGAdgv~v-GsaI~~~~-d~~~~~~~l~~~i 210 (430)
T PRK07028 167 VAGGL------------------------------D----AETAAKAVAAGADIVIV-GGNIIKSA-DVTEAARKIREAI 210 (430)
T ss_pred EECCC------------------------------C----HHHHHHHHHcCCCEEEE-ChHHcCCC-CHHHHHHHHHHHH
Confidence 22222 1 35678889999998877 45588753 33322 233444
Q ss_pred hccCCCce--EEecCCchh
Q 025344 226 GRLGLEKT--MFEATNPRT 242 (254)
Q Consensus 226 ~~l~~~kl--ifEAP~k~q 242 (254)
++..+-|+ .|+.|.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~ 229 (430)
T PRK07028 211 DSGKPVKIDKFKKSLDEEI 229 (430)
T ss_pred hccCCccccccccCCCHHH
Confidence 55554443 688877654
No 380
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=71.06 E-value=64 Score=29.53 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=77.6
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEE-
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE- 119 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IE- 119 (254)
++|+=+.+..=+|++=|- +|.---|...+.+.+...|.+|...+.- |+=|..+ |.++|||.|=
T Consensus 88 lkeVd~L~~~Ga~IIA~D-aT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~-------------a~~~G~D~IGT 153 (229)
T COG3010 88 LKEVDALAEAGADIIAFD-ATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLN-------------AHKLGFDIIGT 153 (229)
T ss_pred HHHHHHHHHCCCcEEEee-cccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHH-------------HHHcCCcEEec
Confidence 344444444445555554 4555555546888888888888877763 5555443 4679999983
Q ss_pred -ecC--CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHH
Q 025344 120 -LNV--GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 196 (254)
Q Consensus 120 -ISd--Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLe 196 (254)
+|- +.-..|.+--..+++.+.+.|..|+.|=.. -+ -+++++.++
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~------------------~t---------------P~~Ak~a~~ 200 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRY------------------NT---------------PEQAKKAIE 200 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCC------------------CC---------------HHHHHHHHH
Confidence 221 111245555569999999999999988555 12 357889999
Q ss_pred cCCcEEEEec
Q 025344 197 AGADMIMIDS 206 (254)
Q Consensus 197 AGA~~ViiEa 206 (254)
.||+-|+|=+
T Consensus 201 ~Ga~aVvVGs 210 (229)
T COG3010 201 IGADAVVVGS 210 (229)
T ss_pred hCCeEEEECc
Confidence 9999999965
No 381
>PLN02428 lipoic acid synthase
Probab=70.85 E-value=29 Score=33.50 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCcccccccccc
Q 025344 104 KEYVEDCKQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 171 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt----------i~i~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~s~v~~~~d~~~~~~~ 171 (254)
++-++.+++.|++.+=.+--| -..+-++++++++.+++. |+.+++ |...+..
T Consensus 195 ~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkS--g~MvGLG-------------- 258 (349)
T PLN02428 195 LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKT--SIMLGLG-------------- 258 (349)
T ss_pred HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE--eEEEecC--------------
Confidence 345555555555554433333 123456666666666666 655544 2222211
Q ss_pred ccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 172 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 172 ~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
++.+++++.+..-.+.|.+.|.+
T Consensus 259 ----------ET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 259 ----------ETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred ----------CCHHHHHHHHHHHHHcCCCEEee
Confidence 13556666666666666666655
No 382
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.77 E-value=25 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEE
Q 025344 182 EDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
.|+++.++.++...++|+|+|=+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe
Confidence 36888899998888999999644
No 383
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.69 E-value=22 Score=32.33 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
...++.+...|||.|-|.-=--.++.++...+|+.++..|..++.-+.. . |
T Consensus 23 p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~----------~-------------------~ 73 (249)
T TIGR02311 23 PYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAI----------G-------------------D 73 (249)
T ss_pred cHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCC----------C-------------------C
Confidence 3566778889999998876555578889999998887777644332211 0 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 025344 184 VDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiE 205 (254)
+. .+++.|++||+-||+=
T Consensus 74 ~~----~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 74 PV----LIKQLLDIGAQTLLVP 91 (249)
T ss_pred HH----HHHHHhCCCCCEEEec
Confidence 21 5788899999999873
No 384
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=70.68 E-value=81 Score=28.41 Aligned_cols=127 Identities=23% Similarity=0.328 Sum_probs=84.6
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
+.+.++..|. +-.+=|++|--.+-+. +.+.++.+++. +++++..|.- .. .-+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~d--~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRPD--LLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCcccccc--HHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3456666776 8888889998888744 99999999955 7766644322 11 12466777899999999999
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 122 VGSLEIPE-----------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
-.+.+-.. +...+.|+.+++.|+.+..=+.+. ..+.+++.+.
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~---------------------------~~n~~~l~~~ 178 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVT---------------------------KINYDELPEI 178 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEe---------------------------cCcHHHHHHH
Confidence 77754332 355677888888777533222221 0125667777
Q ss_pred HHHHHHcCCcEEEEec
Q 025344 191 AERCLEAGADMIMIDS 206 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEa 206 (254)
++...+.|++.+.+-.
T Consensus 179 ~~~~~~~g~~~~~~~~ 194 (347)
T COG0535 179 ADLAAELGVDELNVFP 194 (347)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 7778889987655543
No 385
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=70.59 E-value=26 Score=34.12 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=77.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecC---c-ccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-h
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-N 98 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~---G-T~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~-q 98 (254)
|..++=|-+.+-.+..+++|++....+.. +.+ . |.-..|..+-.++++.++++|+ .++-| ++-+..+. -
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44455554322267888999998876653 222 1 2223455566899999999999 77778 66443332 1
Q ss_pred C-Cc---hHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 99 G-PS---AFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 99 g-~~---~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
| .. .+.+-++.|++.||+.| -+--|.=.-+.++..+-++.+.+.|..
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 2 11 35567788899999875 556666677778888889999887765
No 386
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.58 E-value=46 Score=30.32 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCcEEEEecccccccC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
.+.+++.+++||+-|+| ++.|+.+.
T Consensus 223 ~ed~~~~~~~Gad~vlV-GsaI~~~~ 247 (260)
T PRK00278 223 PEDLKRLAKAGADAVLV-GESLMRAD 247 (260)
T ss_pred HHHHHHHHHcCCCEEEE-CHHHcCCC
Confidence 56677888999999987 44566543
No 387
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=70.57 E-value=6.3 Score=34.48 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 025344 103 FKEYVEDCKQVGFDTIELNV---------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd---------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
+.+=|+++++|||++|++|- |.- .+ +.++..+||+.+.++|++|+-.+-..
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeecc
Confidence 34446788999999999872 211 11 24788999999999999998777653
No 388
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=70.26 E-value=38 Score=34.63 Aligned_cols=131 Identities=16% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHHhCCce--ecCCc-----H-HHHHHHhCCchHHHHHHHHHHcCCC------EEEecCCcccCChhHHHHHHH
Q 025344 72 IEEVVKRAHQHDVY--VSTGD-----W-AEHLIRNGPSAFKEYVEDCKQVGFD------TIELNVGSLEIPEETLLRYVR 137 (254)
Q Consensus 72 l~eKi~l~~~~gV~--v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~lGF~------~IEISdGti~i~~~~r~~lI~ 137 (254)
+.+-++++++++.. .+.|+ | .|.+-.-+++.+-+.++.+.+.|-+ .|-+.|-.--..+..-.++|+
T Consensus 147 ~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~ 226 (564)
T TIGR00970 147 ATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIE 226 (564)
T ss_pred HHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHH
Confidence 44566678988752 22232 1 3444444566788899999999974 778889888888888889999
Q ss_pred HHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc--cccccCCC
Q 025344 138 LVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADS 215 (254)
Q Consensus 138 ~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~ 215 (254)
.++++ +... . ...++-|+--|...-+..+...++|||+. +|+- |+=+..||
T Consensus 227 ~l~~~-------~~~~---------~---------~~~l~vH~HND~GlAvANslaAv~aGa~~--v~gt~~G~GERaGN 279 (564)
T TIGR00970 227 YFSTN-------IAER---------E---------KVCLSLHPHNDRGTAVAAAELGFLAGADR--IEGCLFGNGERTGN 279 (564)
T ss_pred HHHHh-------cCcc---------c---------CceEEEEECCCCChHHHHHHHHHHhCCCE--EEeecCcCCccccC
Confidence 99873 1100 0 00122334445666688889999999998 4664 77566899
Q ss_pred ccHHHHHHHHhccC
Q 025344 216 LRADIIAKVIGRLG 229 (254)
Q Consensus 216 ~r~d~i~~ii~~l~ 229 (254)
...+.+-..+...|
T Consensus 280 a~le~lv~~L~~~g 293 (564)
T TIGR00970 280 VDLVTLALNLYTQG 293 (564)
T ss_pred ccHHHHHHHHHhcC
Confidence 88887766665444
No 389
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=70.20 E-value=39 Score=32.14 Aligned_cols=74 Identities=32% Similarity=0.432 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCcccCC--------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 025344 102 AFKEYVEDCKQVG-FDTIELNVGSLEIP--------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 172 (254)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~i~--------~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~ 172 (254)
.+++|+....+.+ .++||++=.+=..| .+...++.+.+++. .+ +| +.+| ++
T Consensus 110 ~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~-~P-v~vK-----------------l~ 169 (310)
T COG0167 110 AWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TK-VP-VFVK-----------------LA 169 (310)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-cc-Cc-eEEE-----------------eC
Confidence 5788888889999 99999997776533 34555566666652 00 12 2222 55
Q ss_pred cCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 173 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 173 ~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
| +.+++.+-++...++|||-|++
T Consensus 170 P---------~~~di~~iA~~~~~~g~Dgl~~ 192 (310)
T COG0167 170 P---------NITDIDEIAKAAEEAGADGLIA 192 (310)
T ss_pred C---------CHHHHHHHHHHHHHcCCcEEEE
Confidence 5 4789999999999999998764
No 390
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.14 E-value=10 Score=36.71 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHcCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAKP 148 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r----~~lI~~~~~~G~~v~~ 148 (254)
...+.++.++++||+.||+.+.- ...+..++ .++-+.+++.|++|..
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 67899999999999999998754 23443332 4666778899998543
No 391
>PRK08323 phenylhydantoinase; Validated
Probab=69.96 E-value=61 Score=31.13 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=63.4
Q ss_pred ccccEEeecCc--ccccCChhHHHHHHHHHHhCCceecC--Cc--HHHHH----HHhCC----------------chHHH
Q 025344 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (254)
Q Consensus 52 ~yID~lKfg~G--T~~l~~~~~l~eKi~l~~~~gV~v~~--Gt--l~E~a----~~qg~----------------~~~~~ 105 (254)
..++.+|+..+ .....+.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 34577887643 23456677899999999999987654 23 22211 11121 13444
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
-++.++.+|.... | .-++..+-.++|+.+++.|..|..|+...
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p~ 262 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCPQ 262 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCcc
Confidence 5677888886654 3 55666777899999999998877676553
No 392
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.87 E-value=43 Score=37.24 Aligned_cols=102 Identities=22% Similarity=0.190 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
-++.|++.+.+-|+|.+-|=|..=+++.= ...|+.+++.|..+ |..+-.-. ++ -|+. .| .
T Consensus 626 vv~~f~~~~~~~GidifrifD~lN~~~n~--~~~~~~~~~~g~~~--~~~i~yt~-~~---~d~~-----~~-------~ 685 (1143)
T TIGR01235 626 VVKYFVKQAAQGGIDIFRVFDSLNWVENM--RVGMDAVAEAGKVV--EAAICYTG-DI---LDPA-----RP-------K 685 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcCHHHH--HHHHHHHHHcCCEE--EEEEEEec-cC---CCcC-----CC-------C
Confidence 58999999999999999998887777653 46799999999755 44442211 11 1111 00 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhcc
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 228 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l 228 (254)
-|++.+++.++.-.++||+.| .|.|-.|-.++..+.++++.+
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I-----~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHIL-----GIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCcCCcCHHHHHHHHHHH
Confidence 268889999999999999866 578899999999888888665
No 393
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.85 E-value=30 Score=33.78 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
.+.++++.+.+.|.|+||++=++-.. ..+.-.++++.+++. .-+| +-+|
T Consensus 128 ~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~--~~iP-v~vK---------------- 188 (385)
T PLN02495 128 AWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK--ATVP-VWAK---------------- 188 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh--hcCc-eEEE----------------
Confidence 56667777888899999997754332 334444555666663 1233 4443
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
++| +..++...++..+++||+-|++
T Consensus 189 -LsP---------n~t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 189 -MTP---------NITDITQPARVALKSGCEGVAA 213 (385)
T ss_pred -eCC---------ChhhHHHHHHHHHHhCCCEEEE
Confidence 333 3556778888899999998876
No 394
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=69.76 E-value=33 Score=31.15 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=88.5
Q ss_pred CCCCCceeEec--CCCCCC----cchhHHHHHHHhhcccccEE-eecCcccccCChhHHHHHHHHHHhCCceec----C-
Q 025344 21 PRRFGVTEMRS--PHYTLS----SSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----T- 88 (254)
Q Consensus 21 PR~~GlT~V~D--kG~~~~----~g~~~~~DlLe~ag~yID~l-Kfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~- 88 (254)
++..++.+.++ .++.+. .-...+++.++.-++-||+. ++|.-...-+ .+.+++..+.||++|+++. +
T Consensus 71 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~-~~~~~~v~~~~~~~g~pl~vi~~~~ 149 (267)
T PRK07226 71 GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSETEAEM-LEDLGEVAEECEEWGMPLLAMMYPR 149 (267)
T ss_pred CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecCChhHHHH-HHHHHHHHHHHHHcCCcEEEEEecC
Confidence 45566666666 233111 01345788888888878875 5553221112 2347888899999998532 2
Q ss_pred CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 025344 89 GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (254)
Q Consensus 89 Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~ 168 (254)
|-=+|-.+.. +.+....+.|.++|-|.|-.|-. -+ .++++++.+.. .+.++..+ +-+
T Consensus 150 g~~~e~~~~~--~~i~~a~~~a~e~GAD~vKt~~~---~~----~~~l~~~~~~~-----~ipV~a~G------Gi~--- 206 (267)
T PRK07226 150 GPGIKNEYDP--EVVAHAARVAAELGADIVKTNYT---GD----PESFREVVEGC-----PVPVVIAG------GPK--- 206 (267)
T ss_pred CCccCCCccH--HHHHHHHHHHHHHCCCEEeeCCC---CC----HHHHHHHHHhC-----CCCEEEEe------CCC---
Confidence 2112322211 24455568888999999999832 11 34555555421 12333111 100
Q ss_pred cccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccC
Q 025344 169 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 213 (254)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 213 (254)
..+.++..+.++..++|||+- +.=+|.|+...
T Consensus 207 ------------~~~~~~~l~~v~~~~~aGA~G-is~gr~i~~~~ 238 (267)
T PRK07226 207 ------------TDTDREFLEMVRDAMEAGAAG-VAVGRNVFQHE 238 (267)
T ss_pred ------------CCCHHHHHHHHHHHHHcCCcE-EehhhhhhcCC
Confidence 014678889999999999993 34456677654
No 395
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=69.60 E-value=11 Score=40.64 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 72 IEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 72 l~eKi~l~~~~gV-~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+.+.|++|+++|+ -+.|| ||+ +.| .+|-+.|.+-|+..|==+--.+++ .-+|.+....|.+.|+.|+|
T Consensus 69 IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 8899999999999 78899 874 455 689999999999998766666654 34566788889999999888
No 396
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=69.60 E-value=28 Score=32.43 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=99.4
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhc-------ccccEEeecCcccccCChhHHHHHH----HHHHhCCce
Q 025344 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMG-------QFVDGLKFSGGSHSLMPKPFIEEVV----KRAHQHDVY 85 (254)
Q Consensus 17 R~~KPR~~GlT~V~DkG~~~~~g~~~~~DlLe~ag-------~yID~lKfg~GT~~l~~~~~l~eKi----~l~~~~gV~ 85 (254)
|+.+-+..-+||+-.--++. .-.++.+| |-.-..-.|--|..-.+ |.|.. ..+|-.+=.
T Consensus 31 Rqk~~~g~p~t~~TAYD~~~-------a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiS---l~e~~yH~~sV~Rga~~~ 100 (306)
T KOG2949|consen 31 RQKHRAGEPITMVTAYDYPS-------AVHFDTAGIDVCLVGDSLAMTVHGHDTTLPIS---LEEMLYHCRSVARGAKRP 100 (306)
T ss_pred HHHHhcCCceEEEEecccch-------hhhhhhcCCcEEEeccchhheeeccccceeee---HHHHHHHHHHHHccCCCc
Confidence 55556666788887655422 22334333 33333334444433333 33332 233333322
Q ss_pred e-----cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC
Q 025344 86 V-----STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (254)
Q Consensus 86 v-----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~ 160 (254)
. ..|| +|--+.+ .++.-++-.|+-|.|+|-|-.|+ .-+..++++..++|.-|.-.+|.--..-.+
T Consensus 101 llv~DlPFgt-yeS~~sd---a~knAv~vmk~~g~~~vK~EgGs-----~~~~~~~~~l~ergipV~gHvGLTPQ~v~~- 170 (306)
T KOG2949|consen 101 LLVGDLPFGT-YESSWSD---AVKNAVRVMKEGGMDAVKLEGGS-----NSRITAAKRLVERGIPVMGHVGLTPQAVSV- 170 (306)
T ss_pred eEEEecCccc-ccccHHH---HHHHHHHHHHhcCCceEEEccCc-----HHHHHHHHHHHHcCCceeeeccCChhhhhh-
Confidence 2 2244 5666666 58888899999999999999998 677899999999999999999974221111
Q ss_pred CccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 161 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++-+-.|+. .....+++|.+-.-=++|++-|.+|-
T Consensus 171 lGGyk~QGr~----------~~~a~~l~EtAmqLqk~Gc~svvlEC 206 (306)
T KOG2949|consen 171 LGGYKPQGRN----------IASAVKLVETAMQLQKAGCFSVVLEC 206 (306)
T ss_pred ccCcCccchh----------HHHHHHHHHHHHHHHhcccceEeeec
Confidence 0011111222 22477889999999999999999997
No 397
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=69.53 E-value=78 Score=32.51 Aligned_cols=141 Identities=13% Similarity=0.194 Sum_probs=81.4
Q ss_pred hhHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 025344 40 HNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (254)
Q Consensus 40 ~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~ 117 (254)
...+.+.++...++ +|++=+.+|...-.....+.---.+.+.+|+.+.+- |-. -+++..+.+.+..++.+|++.
T Consensus 337 ~~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hltc~----d~n~~~l~~~L~~~~~~Gv~n 412 (612)
T PRK08645 337 TDKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHITCR----DRNLIGLQSHLLGLHALGIRN 412 (612)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEecCC----CcCHHHHHHHHHHHHHcCCce
Confidence 45566666666667 899999887766444433444444445568766542 211 223335788889999999998
Q ss_pred EEecCCcc-------------cCChhHHHHHHHHHHHcCCcc-------cceeeeecCCCCCCCccccccccccccCCCc
Q 025344 118 IELNVGSL-------------EIPEETLLRYVRLVKSAGLKA-------KPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 118 IEISdGti-------------~i~~~~r~~lI~~~~~~G~~v-------~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
|=+=-|-- +++..+..++|+.. +.|.-. .+.|. +|.... |..
T Consensus 413 ILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~-~~g~~~~g~~~~~~~~f~-------ig~A~~--------P~~-- 474 (612)
T PRK08645 413 VLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQL-NEGISYSGKPLGKKTNFS-------IGGAFN--------PNV-- 474 (612)
T ss_pred EEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHH-hCCCCcCCCccCCCCcee-------eeEEeC--------CCC--
Confidence 84433322 23444555555553 223210 11111 111111 211
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.+.+.-++.+++-++|||+++|+--
T Consensus 475 ----~~~~~d~~~L~~Ki~aGAdf~iTQ~ 499 (612)
T PRK08645 475 ----RNLDKEVKRLEKKIEAGADYFITQP 499 (612)
T ss_pred ----CChHHHHHHHHHHHHcCCCEEEecc
Confidence 1467778999999999999999865
No 398
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.33 E-value=7 Score=37.08 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred CcccccCChhHHHHHHHHHHhC-C----------ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 025344 61 GGSHSLMPKPFIEEVVKRAHQH-D----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (254)
Q Consensus 61 ~GT~~l~~~~~l~eKi~l~~~~-g----------V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (254)
||-|..=....+.|.|+-.|+. | |.+++-.+++--+... ..-++++.+.+.|+|+|+||.|+.+-..
T Consensus 186 yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~e--e~~~i~~~L~~~GvD~I~Vs~g~~~~~~ 263 (353)
T cd04735 186 WGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRME--DTLALVDKLADKGLDYLHISLWDFDRKS 263 (353)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHH--HHHHHHHHHHHcCCCEEEeccCcccccc
Q ss_pred -------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 130 -------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 130 -------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
....+.|+++...+..|+.-=++ .+ .+.+++.|+.|||.|
T Consensus 264 ~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi---~t------------------------------~e~ae~~l~~gaD~V 310 (353)
T cd04735 264 RRGRDDNQTIMELVKERIAGRLPLIAVGSI---NT------------------------------PDDALEALETGADLV 310 (353)
T ss_pred ccCCcchHHHHHHHHHHhCCCCCEEEECCC---CC------------------------------HHHHHHHHHcCCChH
Q ss_pred EE
Q 025344 203 MI 204 (254)
Q Consensus 203 ii 204 (254)
++
T Consensus 311 ~~ 312 (353)
T cd04735 311 AI 312 (353)
T ss_pred HH
No 399
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=69.32 E-value=12 Score=34.88 Aligned_cols=138 Identities=20% Similarity=0.313 Sum_probs=78.4
Q ss_pred HHHHHHHhhcccccEEeecC-------cccccCChhHHHHHHHHHHh------CCc---eecCCcH---HHHHHHhCCch
Q 025344 42 VLEDIFESMGQFVDGLKFSG-------GSHSLMPKPFIEEVVKRAHQ------HDV---YVSTGDW---AEHLIRNGPSA 102 (254)
Q Consensus 42 ~~~DlLe~ag~yID~lKfg~-------GT~~l~~~~~l~eKi~l~~~------~gV---~v~~Gtl---~E~a~~qg~~~ 102 (254)
.+.-+++.+| ||++=.|= |-..-.|- .|.+.+-.++. +-. ..+.|++ -|.|+..
T Consensus 27 ~~A~~~d~ag--vD~iLVGDSlgmv~~G~~sT~~v-tld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~n---- 99 (261)
T PF02548_consen 27 PSARIADEAG--VDIILVGDSLGMVVLGYDSTLPV-TLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRN---- 99 (261)
T ss_dssp HHHHHHHHTT---SEEEE-TTHHHHTT--SSSTT---HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHH----
T ss_pred HHHHHHHHcC--CCEEEeCCcHHHheeCCCCCcCc-CHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHH----
Confidence 4456677776 78777663 22222222 25555544332 111 2222543 4444443
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccccc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 182 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~ 182 (254)
-.+.+|+-|.|+|-+.-|. +...+|+.+.++|.-|.-.+|..-.... .++. ++-.-.-..
T Consensus 100 ---A~rl~ke~GadaVKlEGg~------~~~~~i~~l~~~GIPV~gHiGLtPQ~~~-------~~GG----yr~qGk~~~ 159 (261)
T PF02548_consen 100 ---AGRLMKEAGADAVKLEGGA------EIAETIKALVDAGIPVMGHIGLTPQSVH-------QLGG----YRVQGKTAE 159 (261)
T ss_dssp ---HHHHHHTTT-SEEEEEBSG------GGHHHHHHHHHTT--EEEEEES-GGGHH-------HHTS----S--CSTSHH
T ss_pred ---HHHHHHhcCCCEEEeccch------hHHHHHHHHHHCCCcEEEEecCchhhee-------ccCC----ceEEecCHH
Confidence 3566788899999999886 4578999999999999999998532110 0000 000011123
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
+..++++.+++-=+|||..|.+|.
T Consensus 160 ~a~~l~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 160 EAEKLLEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEES
T ss_pred HHHHHHHHHHHHHHcCccEEeeec
Confidence 578999999999999999999998
No 400
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=69.31 E-value=21 Score=34.52 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=52.8
Q ss_pred HHHHH---HHHHHcCCCEEEecCC--cc------c----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCC
Q 025344 103 FKEYV---EDCKQVGFDTIELNVG--SL------E----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (254)
Q Consensus 103 ~~~yl---~~~k~lGF~~IEISdG--ti------~----------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~ 161 (254)
+++|. +.+++.|||.|||... .+ . =|.|.|.|+...+.+. |.-++|..++ +
T Consensus 148 i~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~a---Vr~~vg~~~~---v-- 219 (363)
T COG1902 148 IEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDA---VREAVGADFP---V-- 219 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHH---HHHHhCCCce---E--
Confidence 44454 4678899999999643 22 1 1246676665554442 2224444321 1
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEE
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMI 204 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~Vii 204 (254)
+--++|.+|...+..|+++.++.++.--++| .++|=+
T Consensus 220 ------g~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~v 257 (363)
T COG1902 220 ------GVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHV 257 (363)
T ss_pred ------EEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEe
Confidence 1125666663333557899999999999999 476644
No 401
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=69.31 E-value=11 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred HHHHhCCc-eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 77 ~l~~~~gV-~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
++++++|| .++- |-..++|+.+- . ..+.++||+.+=++|++-..+.+.....++.++..|-+|.
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T--a-----~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT--A-----LDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH--H-----HHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 45678999 5555 66889998884 2 3466899999999999999999999999999999876554
No 402
>PLN02826 dihydroorotate dehydrogenase
Probab=69.21 E-value=71 Score=31.44 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhcccccEEeec------CcccccCChhHHHHHHHHHHhC----------CceecC-CcHHHHHHHhCCc
Q 025344 39 SHNVLEDIFESMGQFVDGLKFS------GGSHSLMPKPFIEEVVKRAHQH----------DVYVST-GDWAEHLIRNGPS 101 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg------~GT~~l~~~~~l~eKi~l~~~~----------gV~v~~-Gtl~E~a~~qg~~ 101 (254)
....+...++.+++|.|++=+- -|-..+..++.+.+.++..++. .+++.. .+. -+...
T Consensus 202 ~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaP---dl~~~-- 276 (409)
T PLN02826 202 AAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAP---DLSKE-- 276 (409)
T ss_pred cHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCC---CCCHH--
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHH--------------------HHHHHHHHHcCCcccceeeeecCCCCCCC
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETL--------------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r--------------------~~lI~~~~~~G~~v~~E~g~k~~~s~v~~ 161 (254)
.+++..+.|.+.|.|.|=++|-++..+.+.. +++|+.+.+.--.-+|=+|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgv--------- 347 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGC--------- 347 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEE---------
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
|...+ -+.+-+.|.|||+.|-+
T Consensus 348 ------GGI~s---------------g~Da~e~i~AGAs~VQv 369 (409)
T PLN02826 348 ------GGVSS---------------GEDAYKKIRAGASLVQL 369 (409)
T ss_pred ------CCCCC---------------HHHHHHHHHhCCCeeee
No 403
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=69.20 E-value=11 Score=33.64 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 71 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 71 ~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
.-.+.++.|+++||.+.|| |.-|+.-.. ++|++.|-+==...-= =..+|+..+. |+|
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vKlFPA~~~G----G~~yikal~~----plp 147 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIPGVATPSEIMLAL-------------ELGITALKLFPAEVSG----GVKMLKALAG----PFP 147 (204)
T ss_pred CCHHHHHHHHHcCCcEECCCCCHHHHHHHH-------------HCCCCEEEECCchhcC----CHHHHHHHhc----cCC
Confidence 4668889999999999998 788887544 6899999875432110 0366766665 566
Q ss_pred eeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 025344 149 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 211 (254)
Q Consensus 149 E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d 211 (254)
.+-.. .+| + ++ .+.+...|+|||..|-+=+ .+++
T Consensus 148 ~i~~~----ptG--G-------V~---------------~~N~~~~l~aGa~~vg~Gs-~L~~ 181 (204)
T TIGR01182 148 QVRFC----PTG--G-------IN---------------LANVRDYLAAPNVACGGGS-WLVP 181 (204)
T ss_pred CCcEE----ecC--C-------CC---------------HHHHHHHHhCCCEEEEECh-hhcC
Confidence 54442 111 1 11 4788999999999988744 3554
No 404
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=69.13 E-value=52 Score=30.00 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCc----HHHHHHHh--C----------C--c
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--G----------P--S 101 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gt----l~E~a~~q--g----------~--~ 101 (254)
...+.+++.-+++|| +|.+...+-+++.+++.+..+++. +++++-.| -+|.|+.. | . +
T Consensus 30 ~~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e 106 (252)
T cd00740 30 DVARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEE 106 (252)
T ss_pred HHHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCcc
Confidence 344555666677777 588776566667777777778776 99998765 48888874 2 1 2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccCChhHHHHHHHHHH
Q 025344 102 AFKEYVEDCKQVGFDTIELNVG--SLEIPEETLLRYVRLVK 140 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG--ti~i~~~~r~~lI~~~~ 140 (254)
++++.+..+++.|...|=+... -+..+.+.|.++.++..
T Consensus 107 ~~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~~~~ 147 (252)
T cd00740 107 RFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAY 147 (252)
T ss_pred ccHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 4678889999999999987752 23445555555544433
No 405
>PRK08444 hypothetical protein; Provisional
Probab=69.06 E-value=1.1e+02 Score=29.33 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=65.7
Q ss_pred ccEEeecCcccccCChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEEEec-----C--
Q 025344 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELN-----V-- 122 (254)
Q Consensus 54 ID~lKfg~GT~~l~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~IEIS-----d-- 122 (254)
+.=+=+-+|-..-.+-+.+.+-++..|+. +|.++.=|..|+.+... .-..++.++.+|+.|.+.+--. +
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~ 176 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEE 176 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHH
Confidence 33333334444444667788889988875 56665446777765441 1358899999999999876431 1
Q ss_pred -----CcccCChhHHHHHHHHHHHcCCcccc
Q 025344 123 -----GSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 123 -----Gti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
-+-..+.++|.++++.|++.|+++-+
T Consensus 177 vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~s 207 (353)
T PRK08444 177 VRKKICKGKVSSERWLEIHKYWHKKGKMSNA 207 (353)
T ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 13367889999999999999998865
No 406
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.92 E-value=13 Score=36.63 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=43.2
Q ss_pred HHHHHHcCCCEEEecCC--cccCCh----------hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 107 VEDCKQVGFDTIELNVG--SLEIPE----------ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 107 l~~~k~lGF~~IEISdG--ti~i~~----------~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
.+.+.+.|+|+|-|+.| ++.... ..-.++.+.+++.|..++++=|++.
T Consensus 279 a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~-------------------- 338 (450)
T TIGR01302 279 AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRY-------------------- 338 (450)
T ss_pred HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCC--------------------
Confidence 45567899999998754 332221 1113344445667777777777742
Q ss_pred CCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 175 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
-..+.+.|++||+.||+=+
T Consensus 339 -------------~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 339 -------------SGDIVKALAAGADAVMLGS 357 (450)
T ss_pred -------------HHHHHHHHHcCCCEEEECc
Confidence 2345677999999999855
No 407
>PRK06256 biotin synthase; Validated
Probab=68.86 E-value=58 Score=30.22 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCceecC-C--cHHHHHHHh--CCchHHHHH---HHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHH
Q 025344 72 IEEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEYV---EDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVK 140 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~-G--tl~E~a~~q--g~~~~~~yl---~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~ 140 (254)
-.+.++.++++|+..+. | | -+-.+.+ .+..+++++ +.+++.|+ +++.|.+ .-+.+++.+.++.++
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~ 226 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLK 226 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHH
Confidence 34667789999985554 3 4 3332221 223566554 55667786 4666654 356788999999999
Q ss_pred HcCCc
Q 025344 141 SAGLK 145 (254)
Q Consensus 141 ~~G~~ 145 (254)
+.+..
T Consensus 227 ~l~~~ 231 (336)
T PRK06256 227 ELDAD 231 (336)
T ss_pred hCCCC
Confidence 88764
No 408
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=68.69 E-value=28 Score=34.75 Aligned_cols=172 Identities=14% Similarity=0.114 Sum_probs=100.8
Q ss_pred hhHHHHHHHhhccccc----------EEeecCcccccCChhHHH-HHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH
Q 025344 40 HNVLEDIFESMGQFVD----------GLKFSGGSHSLMPKPFIE-EVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID----------~lKfg~GT~~l~~~~~l~-eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~ 108 (254)
...++.+|+..|==+- .-+.+-++..+.=...+- --..|.+++||+.+.--|. -|.+..+++++
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~~~c~~~P~ls~aa~~Le~~~gvp~~~~P~P-----iGi~~Td~fLr 281 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEGVYVCGVNPFLSRTATTLMRRRKCKLIGAPFP-----IGPDGTRAWIE 281 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCcccEEEEcCcchHHHHHHHHHHhCCceeecCCc-----CcHHHHHHHHH
Confidence 4788888887763332 222222221111111122 2334445666544332222 34556888888
Q ss_pred HHHHc-CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHH
Q 025344 109 DCKQV-GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 187 (254)
Q Consensus 109 ~~k~l-GF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~ 187 (254)
.+.++ |.. .-.+ .++|.+++....+.-... .|||.. +.. |+...
T Consensus 282 ~Ia~~~G~~-------pe~l-~~Er~rl~dal~d~~~~L---~GKrva---------------i~G---------dp~~~ 326 (457)
T CHL00073 282 KICSVFGIE-------PQGL-EEREEQIWESLKDYLDLV---RGKSVF---------------FMG---------DNLLE 326 (457)
T ss_pred HHHHHhCcC-------HHHH-HHHHHHHHHHHHHHHHHH---CCCEEE---------------EEC---------CCcHH
Confidence 87775 521 2335 677778887777732221 244321 111 45667
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCcc---HHHHHHHHhccCC-CceEEecCCchhHHHHHHHhCCCC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAKVIGRLGL-EKTMFEATNPRTSEWFIRRYGPKV 254 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r---~d~i~~ii~~l~~-~klifEAP~k~qQ~~~I~~~Gp~V 254 (254)
+..++-..+.|..-|.+ |....+..+. .+.+.++++..+. ..+|.|-++...|..+|++..||+
T Consensus 327 i~LarfL~elGmevV~v---gt~~~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~el~~~i~~~~pDL 394 (457)
T CHL00073 327 ISLARFLIRCGMIVYEI---GIPYMDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYNQIQRIRELQPDL 394 (457)
T ss_pred HHHHHHHHHCCCEEEEE---EeCCCChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHHHHHHHhhCCCCE
Confidence 89999999999999988 4443344433 3344555555664 578899999999999999999874
No 409
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.64 E-value=1.1e+02 Score=29.23 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=66.5
Q ss_pred chhHHHHHHHhhcc-cccEEeecCccccc-CChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag~-yID~lKfg~GT~~l-~~~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
.+.++.+....+.+ =+.-+-|-.|-... .+-+.+.+.++..+++ +|.+.+|.+ . .+-++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l----------t-~e~l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL----------S-EEEYAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC----------C-HHHHHHHHHcC
Confidence 44444444433322 26666665565544 4556777888777765 243444321 2 33348899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHcCCcccceeeeecC
Q 025344 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (254)
Q Consensus 115 F~~IEISdGti~------i-------~~~~r~~lI~~~~~~G~~v~~E~g~k~~ 155 (254)
++.+-++--|.+ | +.++|++.|+++++.||+ +.-.|.-.+
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~-~v~~g~i~G 226 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIR-KIGLGALLG 226 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCC-eeceEEEec
Confidence 999998877752 4 568999999999999997 222455444
No 410
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=68.54 E-value=26 Score=31.11 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHhhcccccEEeecCcccccCC--------hhHHHHHHHHHHhCCceecC--CcHHH-HHH--HhCCc----hHHHHHHH
Q 025344 47 FESMGQFVDGLKFSGGSHSLMP--------KPFIEEVVKRAHQHDVYVST--GDWAE-HLI--RNGPS----AFKEYVED 109 (254)
Q Consensus 47 Le~ag~yID~lKfg~GT~~l~~--------~~~l~eKi~l~~~~gV~v~~--Gtl~E-~a~--~qg~~----~~~~yl~~ 109 (254)
|....+.+|++=+ |+...=.. .+..++.|..+|+.|++|.. |++.. ..+ ...+. -++.-++.
T Consensus 21 l~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 21 LLNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred cccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3345588888877 55432222 35688999999999998763 54321 111 11111 25566778
Q ss_pred HHHcCCCEEEecCCccc--------CChhHHHHHHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLE--------IPEETLLRYVRLVKS 141 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~--------i~~~~r~~lI~~~~~ 141 (254)
|++.|||.|-|.--... -..+....+|+.+++
T Consensus 100 v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 100 VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 88999999988543221 133456677777766
No 411
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=68.23 E-value=59 Score=28.32 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=53.4
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec---------CCcHHHHH
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---------TGDWAEHL 95 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~---------~Gtl~E~a 95 (254)
++...++=|+ . .+..++.+++...+.| =.||.++-+++.+++..+-+....|.++ .-+|-|..
T Consensus 72 ~~pi~~ggGI--~-~~ed~~~~~~~Ga~~v-----vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~ 143 (230)
T TIGR00007 72 GVPVQVGGGI--R-SLEDVEKLLDLGVDRV-----IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKS 143 (230)
T ss_pred CCCEEEeCCc--C-CHHHHHHHHHcCCCEE-----EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccC
Confidence 4455555454 2 3455555666544443 3677777766666655544432224332 11232221
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHc
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSA 142 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~ 142 (254)
.....+..+.+.++|++.+=+- +|+..=+ -.++++.+++.
T Consensus 144 ----~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~---~~~~i~~i~~~ 187 (230)
T TIGR00007 144 ----EVSLEELAKRLEELGLEGIIYTDISRDGTLSGP---NFELTKELVKA 187 (230)
T ss_pred ----CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCC---CHHHHHHHHHh
Confidence 1245677888889999865532 3333211 24666666663
No 412
>PLN02389 biotin synthase
Probab=68.13 E-value=68 Score=31.13 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (254)
+.+.+.++.+++.++.++ ...| -.-++-++.+|+.|++.+-++--|. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~--------~s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVC--------CTLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEE--------ECCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 457777788887777665 2222 1345777888999999887654432 246789999999999
Q ss_pred HcCCcccceeeeecC
Q 025344 141 SAGLKAKPKFAVMFN 155 (254)
Q Consensus 141 ~~G~~v~~E~g~k~~ 155 (254)
+.|++|-+ |.-.+
T Consensus 224 ~~Gi~v~s--g~IiG 236 (379)
T PLN02389 224 EAGISVCS--GGIIG 236 (379)
T ss_pred HcCCeEeE--EEEEC
Confidence 99997644 44433
No 413
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=68.01 E-value=83 Score=27.49 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=55.3
Q ss_pred HHHHHHHHHHc---CCCEEEecCCccc-CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCc
Q 025344 103 FKEYVEDCKQV---GFDTIELNVGSLE-IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (254)
Q Consensus 103 ~~~yl~~~k~l---GF~~IEISdGti~-i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~ 177 (254)
.++.++.++++ |.|+||+=-..+. .+.+...+.+..+++. ++.++.-+--+..+ + . .
T Consensus 9 ~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eG------G-----~-~------ 70 (224)
T PF01487_consen 9 LEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEG------G-----R-F------ 70 (224)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGT------S-----S-B------
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccC------C-----C-C------
Confidence 44444444444 9999999877776 5566667777777654 45555444432111 0 0 0
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 178 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 178 ~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
..+.++..+..+..++.|+++|=||..
T Consensus 71 ---~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 71 ---QGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp ---SS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred ---cCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 124788999999999999999999986
No 414
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.94 E-value=27 Score=31.16 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=65.7
Q ss_pred hHHHHHHHhhc-ccccEEeecCcccc------cCChhHHHHHHHHHHhCCceecCC--cH---H------HHHHHhCCch
Q 025344 41 NVLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPSA 102 (254)
Q Consensus 41 ~~~~DlLe~ag-~yID~lKfg~GT~~------l~~~~~l~eKi~l~~~~gV~v~~G--tl---~------E~a~~qg~~~ 102 (254)
...=+.+..+| ++|++. .+... =++...+++.-++++++|+.++.. +. + +..-.+..+.
T Consensus 24 ~e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred HHHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 34444555556 677663 22211 123456888999999999987531 11 1 1111111126
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CC--------hhHHHHHHHHHHHcCCcccceee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLE--IP--------EETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~--------~~~r~~lI~~~~~~G~~v~~E~g 151 (254)
+++.++.|+.+|.+.|=+..+... .+ .+...++.+.+++.|.++.-|..
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 889999999999999987644321 12 12235678888899988888765
No 415
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.62 E-value=20 Score=30.49 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHH
Q 025344 101 SAFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~ 141 (254)
..+.+-++.+.+.|.|+||+- ||..-=....=.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~ 53 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK 53 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh
Confidence 367888999999999999993 44441111122345555554
No 416
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.46 E-value=38 Score=31.76 Aligned_cols=77 Identities=31% Similarity=0.376 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC-------Ch-hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEI-------PE-ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i-------~~-~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~ 173 (254)
.+.++.+.+++.|+++|||+-++-.- .. +...++++.+++. .-+| +.+|- +|
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~--~~iP-V~vKl-----------------~p 174 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA--VSIP-VAVKL-----------------SP 174 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc--cCCc-EEEEe-----------------CC
Confidence 45677778888999999996443111 11 2245777877764 1134 44441 11
Q ss_pred CCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 174 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 174 ~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+..+..+.++...++||+.|++=.+
T Consensus 175 ---------~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 175 ---------YFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred ---------CchhHHHHHHHHHHcCCCeEEEECC
Confidence 1234566677778999999987555
No 417
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=67.21 E-value=90 Score=29.13 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=45.6
Q ss_pred HHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecC--CCCCCCccccccccccccCC
Q 025344 108 EDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN--KSDIPSDRDRAFGAYVARAP 175 (254)
Q Consensus 108 ~~~k~lGF~~IEISd----------Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~--~s~v~~~~d~~~~~~~~~~~ 175 (254)
..+.+.|+|.|=|.| .|++++-++-....+.+++ |.++. ..++|. +.|
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R---------ga~~~~vv~DmPf------~sy----- 89 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR---------GAPNAFVVADMPF------GSY----- 89 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH---------H-TSSEEEEE--T------TSS-----
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh---------cCCCceEEecCCc------ccc-----
Confidence 344566777777764 5889999988777666665 22211 112221 111
Q ss_pred CccccccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 025344 176 RSTEYVEDVDLLIRRAERCLE-AGADMIMIDSD 207 (254)
Q Consensus 176 ~~~~~~~d~~~~i~~~~~dLe-AGA~~ViiEar 207 (254)
..++++.++.+.+.+. +||+.|-+|+.
T Consensus 90 -----~~s~e~av~nA~rl~ke~GadaVKlEGg 117 (261)
T PF02548_consen 90 -----QASPEQAVRNAGRLMKEAGADAVKLEGG 117 (261)
T ss_dssp -----TSSHHHHHHHHHHHHHTTT-SEEEEEBS
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 1369999999999999 99999999983
No 418
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=67.15 E-value=1.1e+02 Score=28.50 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 105 EYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
+.++.|-+.||+.|-+..-.. |.++.. ++.+.++..|..|--|.|- +|..+|.. . .....
T Consensus 88 e~i~~Al~~G~tsVm~d~s~~--~~~eni~~t~~v~~~a~~~gv~veaE~gh------lG~~d~~~-------~-~~g~s 151 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSHL--PLEENIQKTKEIVELAKQYGATVEAEIGR------VGGSEDGS-------E-DIEML 151 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCCC--CHHHHHHHHHHHHHHHHHcCCeEEEEeee------ECCccCCc-------c-cccce
Confidence 567778889999999988775 455544 4566777888887777764 22222210 0 00001
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEec---ccccccCCCccHHHHHHHHhccC
Q 025344 181 VEDVDLLIRRAERCLE-AGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..|+++ ++++.+ .|+|++=+=- -|.|...-.+..+.+.+|.+.++
T Consensus 152 ~t~~ee----a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~ 200 (281)
T PRK06806 152 LTSTTE----AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH 200 (281)
T ss_pred eCCHHH----HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC
Confidence 235444 555553 5999998822 26675555688888998887765
No 419
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=66.95 E-value=35 Score=31.12 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHH--------
Q 025344 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAE-------- 93 (254)
Q Consensus 23 ~~GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E-------- 93 (254)
..|+|.|+|.|- ..+.. +++.++--+..|-.++. |..+-
T Consensus 53 ~~GvTtv~d~g~-------------------------------~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~ 100 (342)
T cd01299 53 RAGFTTVRDAGG-------------------------------ADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDP 100 (342)
T ss_pred hCCCcEEEeCCC-------------------------------cchHH-HHHHHHcCCccCCceeecchhhcccCCCCcc
Q ss_pred ------------HHHHhCCchHHHHHHHHHHcCCCEEEecC-----------CcccCChhHHHHHHHHHHHcCCccccee
Q 025344 94 ------------HLIRNGPSAFKEYVEDCKQVGFDTIELNV-----------GSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 94 ------------~a~~qg~~~~~~yl~~~k~lGF~~IEISd-----------Gti~i~~~~r~~lI~~~~~~G~~v~~E~ 150 (254)
.....+++.+.+.++...+.|.+.|-+-- +...++.+...++++.+++.|+.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 101 RGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred ccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Q ss_pred eeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEE
Q 025344 151 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 202 (254)
Q Consensus 151 g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~V 202 (254)
.- -..++..+++|++.|
T Consensus 181 ~~-----------------------------------~~~i~~~l~~G~~~i 197 (342)
T cd01299 181 YG-----------------------------------AEAIRRAIRAGVDTI 197 (342)
T ss_pred CC-----------------------------------HHHHHHHHHcCCCEE
No 420
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=66.91 E-value=56 Score=29.42 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=89.9
Q ss_pred CCCCCCceeEecCCCCCC------cchhHHHHHHHhhcccccE-EeecCcc-cccCChhHHHHHHHHHHhCCceecC---
Q 025344 20 KPRRFGVTEMRSPHYTLS------SSHNVLEDIFESMGQFVDG-LKFSGGS-HSLMPKPFIEEVVKRAHQHDVYVST--- 88 (254)
Q Consensus 20 KPR~~GlT~V~DkG~~~~------~g~~~~~DlLe~ag~yID~-lKfg~GT-~~l~~~~~l~eKi~l~~~~gV~v~~--- 88 (254)
.++..++.++++-+.+.. .-...+++.++.-.+-||+ .|+|.-+ .-.+ +.+++..++||++|+++.-
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~--~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 67 YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQI--RDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 456778888986665431 0113478888887777777 5655311 1222 2488888899999975432
Q ss_pred --CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 025344 89 --GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 166 (254)
Q Consensus 89 --Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~ 166 (254)
|--+.. ...+.+.+..+.+.++|-|+|-+|-. .+ .+.++++.+.. .+.++. +| +-.
T Consensus 145 ~~Gvh~~~---~~~~~~~~~~~~a~~~GADyikt~~~---~~----~~~l~~~~~~~-----~iPVva----~G--Gi~- 202 (258)
T TIGR01949 145 PRGPHIDD---RDPELVAHAARLGAELGADIVKTPYT---GD----IDSFRDVVKGC-----PAPVVV----AG--GPK- 202 (258)
T ss_pred ccCccccc---ccHHHHHHHHHHHHHHCCCEEeccCC---CC----HHHHHHHHHhC-----CCcEEE----ec--CCC-
Confidence 210100 11123444457788899999999722 12 34455555421 112221 11 100
Q ss_pred cccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecccccccCC
Q 025344 167 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD 214 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEargi~d~~g 214 (254)
..|.++..+.++..+++||+-|. =++.|+..+.
T Consensus 203 --------------~~~~~~~~~~i~~~~~aGa~Gia-~g~~i~~~~d 235 (258)
T TIGR01949 203 --------------TNSDREFLQMIKDAMEAGAAGVA-VGRNIFQHDD 235 (258)
T ss_pred --------------CCCHHHHHHHHHHHHHcCCcEEe-hhhHhhcCCC
Confidence 01478889999999999999543 3567776653
No 421
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=66.80 E-value=13 Score=33.05 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=56.8
Q ss_pred HHHcCCCEEEecCCcccC-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 188 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i 188 (254)
..+.|++.+=|=|=.-.+ ....-.++|+++.+.-+ +.++.+. |..+ .
T Consensus 38 ~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~-----~~i~vgG-----------------------GIrs----~ 85 (229)
T PF00977_consen 38 FNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETG-----IPIQVGG-----------------------GIRS----I 85 (229)
T ss_dssp HHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSS-----SEEEEES-----------------------SE-S----H
T ss_pred HHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCC-----ccEEEeC-----------------------ccCc----H
Confidence 368899988887644444 44556688888887522 1111110 1112 7
Q ss_pred HHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEec
Q 025344 189 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 237 (254)
Q Consensus 189 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEA 237 (254)
+.+++-|++||++|++=+.-+. +.++++++++.+|.+++++=-
T Consensus 86 ed~~~ll~~Ga~~Vvigt~~~~------~~~~l~~~~~~~g~~~ivvsl 128 (229)
T PF00977_consen 86 EDAERLLDAGADRVVIGTEALE------DPELLEELAERYGSQRIVVSL 128 (229)
T ss_dssp HHHHHHHHTT-SEEEESHHHHH------CCHHHHHHHHHHGGGGEEEEE
T ss_pred HHHHHHHHhCCCEEEeChHHhh------chhHHHHHHHHcCcccEEEEE
Confidence 8889999999999999776322 245688888888887877643
No 422
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=66.60 E-value=40 Score=30.67 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=47.4
Q ss_pred HHcCCCEEEecCCc----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 111 KQVGFDTIELNVGS----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 111 k~lGF~~IEISdGt----------i~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.+.||++|=+|+.. ..++.++.+..++.+.+. ..-.| +-+ .-+.|+.
T Consensus 29 e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~-~~~~p-via---D~~~G~g------------------ 85 (240)
T cd06556 29 ADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRG-APLAL-IVA---DLPFGAY------------------ 85 (240)
T ss_pred HHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhh-CCCCC-EEE---eCCCCCC------------------
Confidence 45588888888743 367888888888877762 11011 111 0111111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++++.++.+++.++|||+-|-||.
T Consensus 86 -~~~~~~~~~~~~l~~aGa~gv~iED 110 (240)
T cd06556 86 -GAPTAAFELAKTFMRAGAAGVKIEG 110 (240)
T ss_pred -cCHHHHHHHHHHHHHcCCcEEEEcC
Confidence 1368889999999999999999998
No 423
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=66.59 E-value=98 Score=27.78 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=60.7
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc-----HHHHH
Q 025344 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD-----WAEHL 95 (254)
Q Consensus 25 GlT~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt-----l~E~a 95 (254)
.++...+=|. . ....++++++. | .|. +-.||+++.+++.+++-.+.+-+-.|.++ .|. |.+++
T Consensus 74 ~~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~ 145 (254)
T TIGR00735 74 FIPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVY 145 (254)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEE
Confidence 4455555554 2 45666667774 3 343 46689999999888886555521123332 221 11211
Q ss_pred HH----hCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHH
Q 025344 96 IR----NGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKS 141 (254)
Q Consensus 96 ~~----qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~ 141 (254)
.. .......++.+.+.++|++.|.+++-+-+- +--+ .++++++++
T Consensus 146 i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~ 196 (254)
T TIGR00735 146 IYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSE 196 (254)
T ss_pred EeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHH
Confidence 11 112357899999999999999996522210 1111 356666665
No 424
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=66.57 E-value=11 Score=39.43 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhC---C----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC------hhHHHHH
Q 025344 69 KPFIEEVVKRAHQH---D----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP------EETLLRY 135 (254)
Q Consensus 69 ~~~l~eKi~l~~~~---g----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~------~~~r~~l 135 (254)
...+.|.++..|+. + |++++.+|.+--+.. +..-++.+.+.+.|.|.|+||.|...-. ..-...+
T Consensus 601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~--~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~ 678 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP--DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPF 678 (765)
T ss_pred hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH--HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHH
Confidence 34567777777773 2 355554554421111 1233566677788999999998864311 0111334
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcC-CcEEEEecccccccCC
Q 025344 136 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHAD 214 (254)
Q Consensus 136 I~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g 214 (254)
.+.+|+. +++. ..-+| .+. | .+.+++.|+.| ||+|++ +|++.-
T Consensus 679 ~~~ik~~-------~~~p--v~~~G--------~i~-----------~----~~~a~~~l~~g~~D~v~~-gR~~l~--- 722 (765)
T PRK08255 679 ADRIRNE-------AGIA--TIAVG--------AIS-----------E----ADHVNSIIAAGRADLCAL-ARPHLA--- 722 (765)
T ss_pred HHHHHHH-------cCCE--EEEeC--------CCC-----------C----HHHHHHHHHcCCcceeeE-cHHHHh---
Confidence 4444442 2221 11111 111 2 56677888876 899888 564422
Q ss_pred CccHHHHHHHHhccCCC
Q 025344 215 SLRADIIAKVIGRLGLE 231 (254)
Q Consensus 215 ~~r~d~i~~ii~~l~~~ 231 (254)
+++.+.+.+.+++.+
T Consensus 723 --dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 723 --DPAWTLHEAAEIGYR 737 (765)
T ss_pred --CccHHHHHHHHcCCC
Confidence 234666667777765
No 425
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=66.45 E-value=21 Score=33.40 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC--CCceEEecC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 238 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~--~~klifEAP 238 (254)
.++++..+++|||.||.+ |+..+.+.+.++.+. -.+++.||.
T Consensus 198 leea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leas 241 (277)
T TIGR01334 198 IEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAA 241 (277)
T ss_pred HHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEE
Confidence 788888999999999998 566676766666653 345666665
No 426
>PRK06852 aldolase; Validated
Probab=66.33 E-value=60 Score=30.81 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=82.0
Q ss_pred EEeecCcccccC-----ChhHHHHHHHHHHhCC-----------ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 025344 56 GLKFSGGSHSLM-----PKPFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (254)
Q Consensus 56 ~lKfg~GT~~l~-----~~~~l~eKi~l~~~~g-----------V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IE 119 (254)
++|+..+|+... |...+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+..|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 588988777664 2122333344455544 588899877765555 578889999999999985
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHcC---CcccceeeeecCCCCCCCcccc-cccccc--c-cCC-Cccccc-c
Q 025344 120 --------LNVGSLEIPEETLLRYVRLVKSAG---LKAKPKFAVMFNKSDIPSDRDR-AFGAYV--A-RAP-RSTEYV-E 182 (254)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G---~~v~~E~g~k~~~s~v~~~~d~-~~~~~~--~-~~~-~~~~~~-~ 182 (254)
|+|+. +.+.-.-+.|.+.+.| .|+.+ ..+ +. ++|+ .|...+ . |.+ ..+-|. .
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADIVKv~y--~~~----~~--~g~~e~f~~vv~~~g~vpVviaGG~k~ 241 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADFVKVNY--PKK----EG--ANPAELFKEAVLAAGRTKVVCAGGSST 241 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCEEEecC--CCc----CC--CCCHHHHHHHHHhCCCCcEEEeCCCCC
Confidence 23322 2334445555566655 33322 100 00 0000 000000 0 111 111122 2
Q ss_pred CHHHHHHHHHHHHH-cCCcEEEEecccccccCC
Q 025344 183 DVDLLIRRAERCLE-AGADMIMIDSDDVCKHAD 214 (254)
Q Consensus 183 d~~~~i~~~~~dLe-AGA~~ViiEargi~d~~g 214 (254)
+..++.+.++..++ +||.=|++ +|-||....
T Consensus 242 ~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~~ 273 (304)
T PRK06852 242 DPEEFLKQLYEQIHISGASGNAT-GRNIHQKPL 273 (304)
T ss_pred CHHHHHHHHHHHHHHcCCceeee-chhhhcCCC
Confidence 57889999999999 99988877 788887754
No 427
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=66.32 E-value=34 Score=32.57 Aligned_cols=116 Identities=11% Similarity=0.157 Sum_probs=80.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE-eecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-C
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~l-Kfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g-~ 100 (254)
|.-++=|-|.+-....++.+|+....|++-. -+ |.-..|..+-.++++.++++|+ .++-| ++-+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556655433226789999999998885311 11 3344566667899999999999 77778 665555422 2 2
Q ss_pred ch---HHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 101 SA---FKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 101 ~~---~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.. +.+-++.|++.||+ .+.+--|.=.-+.++..+.++.+.+.+..
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 185 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKIN 185 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCC
Confidence 23 55566678888998 45666777778888888889998887765
No 428
>PRK12313 glycogen branching enzyme; Provisional
Probab=66.14 E-value=13 Score=38.02 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Cc-----ccC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 025344 103 FKEYVEDCKQVGFDTIELNV----------GS-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd----------Gt-----i~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
.++.++++++||+++|+++= |. ..+ +.++..++|+.+.++|++|+-.+-..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45567899999999999853 11 112 25688999999999999998876553
No 429
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=65.80 E-value=48 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecCCch
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 241 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP~k~ 241 (254)
.+++.++.|.+.-+- +.+.+ -+...+.+++..++.+|++||..-|.
T Consensus 159 ~~~~~~~~g~~~~~~-~~~~~-----~~~~~~~~~~~~~~~dril~~TD~p~ 204 (251)
T cd01310 159 EAKELLDLGFYISIS-GIVTF-----KNANELREVVKEIPLERLLLETDSPY 204 (251)
T ss_pred HHHHHHHcCCEEEee-eeecc-----CCCHHHHHHHHhCChHHEEEcccCCC
Confidence 444445567654333 22211 12346788899999999999987543
No 430
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.73 E-value=20 Score=33.72 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL 125 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti 125 (254)
.-++.+.+.+.|+++||||.|+.
T Consensus 238 a~~ia~~Le~~Gvd~iev~~g~~ 260 (338)
T cd04733 238 ALEVVEALEEAGVDLVELSGGTY 260 (338)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC
Confidence 34667777888999999999975
No 431
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=65.68 E-value=18 Score=32.15 Aligned_cols=93 Identities=9% Similarity=-0.034 Sum_probs=53.6
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHH-HHHHcCCCE
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE-DCKQVGFDT 117 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~-~~k~lGF~~ 117 (254)
......++++..++++|++|+|+--..-+..+.+++.-+++. |.++.. ..-+.- +..|+. .+.+.|.+.
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~~--~~~v~~----DLK~~D----i~~~v~~~~~~~Gad~ 83 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYP--DKIIVA----DTKIAD----AGKILAKMAFEAGADW 83 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHCC--CCEEEE----EEeecC----CcHHHHHHHHHCCCCE
Confidence 456778899999999999999987766665555555444321 222211 111111 112222 255667777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHcCC
Q 025344 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (254)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G~ 144 (254)
+-|.--+ +.++-.+.++.+++.|.
T Consensus 84 vTvH~~a---~~~~i~~~~~~~~~~g~ 107 (216)
T PRK13306 84 VTVICAA---HIPTIKAALKVAKEFNG 107 (216)
T ss_pred EEEeCCC---CHHHHHHHHHHHHHcCC
Confidence 7776422 55555666666666553
No 432
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=65.57 E-value=23 Score=31.60 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 101 SAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.++.+.++.+++.|++. +-|-||...=....=.+.|+..++.++.+.-++..+
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm------------------------- 73 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLM------------------------- 73 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEEC-------------------------
Confidence 47889999999999776 677888873222223577888888765554455553
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 179 EYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
+.+|... ++.+.++|||+|.+=++
T Consensus 74 --~~~p~~~---i~~~~~~Gad~itvH~e 97 (228)
T PTZ00170 74 --VSNPEKW---VDDFAKAGASQFTFHIE 97 (228)
T ss_pred --CCCHHHH---HHHHHHcCCCEEEEecc
Confidence 1124443 46777899999988665
No 433
>PHA02754 hypothetical protein; Provisional
Probab=65.40 E-value=4.6 Score=29.77 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhcccccEEee
Q 025344 40 HNVLEDIFESMGQFVDGLKF 59 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKf 59 (254)
.++++|+|+.+|=|||-+|.
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 47899999999999999985
No 434
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=65.12 E-value=29 Score=33.28 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCCEEEec------C-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 025344 102 AFKEYVEDCKQVGFDTIELN------V-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS------d-Gti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~ 174 (254)
...+.++.+|+.|+++|-+= + |. -+.+.=.++.+++|+.||+|.--|+-.+-..+++. -..|.
T Consensus 25 ~~~d~~~ilk~~G~N~vRlRvwv~P~~~g~--~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~--------Q~~P~ 94 (332)
T PF07745_consen 25 QEKDLFQILKDHGVNAVRLRVWVNPYDGGY--NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGK--------QNKPA 94 (332)
T ss_dssp SB--HHHHHHHTT--EEEEEE-SS-TTTTT--TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB---------B--T
T ss_pred CCCCHHHHHHhcCCCeEEEEeccCCccccc--CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCC--------CCCCc
Confidence 45778899999999999872 3 54 44556678999999999999999999877776642 24577
Q ss_pred CCccccccCHHHHHHH--------HHHHHHcCCcEEEEec--c---cccccCCC-ccHHHHHHHH-------h-ccCCCc
Q 025344 175 PRSTEYVEDVDLLIRR--------AERCLEAGADMIMIDS--D---DVCKHADS-LRADIIAKVI-------G-RLGLEK 232 (254)
Q Consensus 175 ~~~~~~~~d~~~~i~~--------~~~dLeAGA~~ViiEa--r---gi~d~~g~-~r~d~i~~ii-------~-~l~~~k 232 (254)
.|... +.++|.+. +...-++|+.-=||.= + |++-..|+ -..+-+.+++ + .-+--+
T Consensus 95 aW~~~---~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~k 171 (332)
T PF07745_consen 95 AWANL---SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIK 171 (332)
T ss_dssp TCTSS---SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSE
T ss_pred cCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88654 44555433 3555677886555543 2 77665554 2334344443 2 233566
Q ss_pred eEEecCCch---hHHHHHHHh
Q 025344 233 TMFEATNPR---TSEWFIRRY 250 (254)
Q Consensus 233 lifEAP~k~---qQ~~~I~~~ 250 (254)
||.=-.++. .+.||...+
T Consensus 172 V~lH~~~~~~~~~~~~~f~~l 192 (332)
T PF07745_consen 172 VMLHLANGGDNDLYRWFFDNL 192 (332)
T ss_dssp EEEEES-TTSHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 776544443 457776654
No 435
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=64.98 E-value=17 Score=36.21 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (254)
+-++.+++.++|+|.|=|-|=+--+++..=-++|+.+|+
T Consensus 158 yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~ 196 (472)
T COG5016 158 YVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKK 196 (472)
T ss_pred HHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHH
Confidence 444555666789999999999999999999999999999
No 436
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=64.92 E-value=83 Score=31.20 Aligned_cols=174 Identities=11% Similarity=0.155 Sum_probs=106.6
Q ss_pred chhHHHHHHHhhc--ccccEEeecCcccccCChhHHHHHHHHHHhC-Cce-ecCCcHHHHHHHhCCchHHHHHHHHHHcC
Q 025344 39 SHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (254)
Q Consensus 39 g~~~~~DlLe~ag--~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~-v~~Gtl~E~a~~qg~~~~~~yl~~~k~lG 114 (254)
+...++.+++-.. .-|.-+-|++|=..+++.+.|+..++.+++. +|. +.-||=.=+++-+- --++.++.+++.+
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~R--IT~ell~~Lk~~~ 216 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQR--ITDELVAILKKHH 216 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccc--cCHHHHHHHHhcC
Confidence 4456666665433 3477788999999999988888878887776 553 44455333333221 2368888888888
Q ss_pred CCEEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHH
Q 025344 115 FDTIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAER 193 (254)
Q Consensus 115 F~~IEIS-dGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~ 193 (254)
..+|=+| |+--++..+.+ +.+++++++|..+....-. ...| .+ |++-+.+..++
T Consensus 217 ~~~v~~h~nhp~Eit~~a~-~Al~~L~~aGI~l~nQsVL---LkGV--ND-------------------~~~~l~~L~~~ 271 (417)
T TIGR03820 217 PVWLNTHFNHPREITASSK-KALAKLADAGIPLGNQSVL---LAGV--ND-------------------CPRIMKKLVHK 271 (417)
T ss_pred CeEEEEeCCChHhChHHHH-HHHHHHHHcCCEEEeeceE---ECCc--CC-------------------CHHHHHHHHHH
Confidence 7777554 44446655554 8899999999886665555 2222 23 36678888899
Q ss_pred HHHcCC--cEEEEec--ccc--cccCCCccHHHHHHHHhccC---CCceEEecCC
Q 025344 194 CLEAGA--DMIMIDS--DDV--CKHADSLRADIIAKVIGRLG---LEKTMFEATN 239 (254)
Q Consensus 194 dLeAGA--~~ViiEa--rgi--~d~~g~~r~d~i~~ii~~l~---~~klifEAP~ 239 (254)
-+++|+ +|+-.-- .|. |+-.-.-=-++++++...++ .-+..-++|.
T Consensus 272 L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~pg 326 (417)
T TIGR03820 272 LVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAPG 326 (417)
T ss_pred HHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecCC
Confidence 999987 3333221 121 21111111345555554444 6677777773
No 437
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=64.92 E-value=71 Score=30.62 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=60.6
Q ss_pred ccEEeecCccc--ccCChhHHHHHHHHHHhCCceecC--Cc--HHHHHHH----hCCch----------------HHHHH
Q 025344 54 VDGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPSA----------------FKEYV 107 (254)
Q Consensus 54 ID~lKfg~GT~--~l~~~~~l~eKi~l~~~~gV~v~~--Gt--l~E~a~~----qg~~~----------------~~~yl 107 (254)
++.+|+..+.. ...+.+.|++-++.++++|+.+.. -+ +.+.... +|... +...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 45677754332 334677899999999999987753 22 3332221 13111 12235
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.++.+|...+ ..-++..+-.++|+.+++.|..+..|+..
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~p 263 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETCP 263 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 66778888776 55666777778999999999887666655
No 438
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=64.89 E-value=37 Score=33.20 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=74.5
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-C---chHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P---SAFKEYVEDC 110 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g-~---~~~~~yl~~~ 110 (254)
.+..+.++++..-.+..+.+-..-|.-+.|..+=.++++.++++|+ .++-| ++=+..+.. + . +.+.+-++.+
T Consensus 117 ~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l 196 (455)
T TIGR00538 117 SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHA 196 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5788999999887764422211123334555555789999999999 67667 554433311 1 1 2356678888
Q ss_pred HHcCCC--EEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 111 KQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 111 k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
++.||+ .+-+--|.-.-+.++..+.++.+.+.|..-+
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~i 235 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRL 235 (455)
T ss_pred HhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 899998 4566677777888899999999999876533
No 439
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=64.88 E-value=1.1e+02 Score=28.55 Aligned_cols=162 Identities=15% Similarity=0.264 Sum_probs=101.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceec----CCc--H---HHH------HHHhCC-----
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W---AEH------LIRNGP----- 100 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~----~Gt--l---~E~------a~~qg~----- 100 (254)
..++++|..|-+- +++-|.+-+++-+.++.-++-|.+.+-++- +|+ + ++. .+.+.-
T Consensus 4 v~~~~~l~~A~~~----~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vP 79 (293)
T PRK07315 4 VSAEKFVQAARDN----GYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVP 79 (293)
T ss_pred CcHHHHHHHHHHC----CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCc
Confidence 3566677665443 567778888888888888888888776443 221 1 121 011100
Q ss_pred -------chHHHHHHHHHHcCCCEEEecCCcccCChhHHHH----HHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 025344 101 -------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR----YVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (254)
Q Consensus 101 -------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~----lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~ 169 (254)
..+ +.+.+|-+.||+.|=+..-. +|.++..+ +++.++..|..|--|+|.-.+ ..|...+.
T Consensus 80 V~lHLDH~~~-~~i~~ai~~GftSVm~d~S~--l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g------~ed~~~g~ 150 (293)
T PRK07315 80 VAIHLDHGHY-EDALECIEVGYTSIMFDGSH--LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGG------EEDGIIGK 150 (293)
T ss_pred EEEECCCCCH-HHHHHHHHcCCCEEEEcCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccC------cCccccCc
Confidence 012 36788889999999998776 45555554 455566689988888886321 11211000
Q ss_pred ccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe---cccccccC-CCccHHHHHHHHhcc
Q 025344 170 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID---SDDVCKHA-DSLRADIIAKVIGRL 228 (254)
Q Consensus 170 ~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE---argi~d~~-g~~r~d~i~~ii~~l 228 (254)
.. -.|+++ ++++.+.|+|++=+= .-|+|... -.++.+.+.+|-+.+
T Consensus 151 s~---------~t~pee----a~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 151 GE---------LAPIED----AKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred cC---------CCCHHH----HHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 00 024444 455557899998776 23888763 569999999999876
No 440
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=64.87 E-value=97 Score=30.52 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=90.4
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 122 (254)
+-..|+.+| ||++=.||..+.-...+.++.... ..+. +. ..+++-..- ..+.=++.+.+-|.+.|-|-.
T Consensus 29 Ia~~Ld~lG--v~~IE~g~p~~s~~~~~~~~~i~~---~~~~--~~--~~~~~~~~~--~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 29 IAKALDDLG--VDYIEAGFPVASPGDFEFVRAIAE---KAGL--FI--CALIAALAR--AIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred HHHHHHHcC--CCEEEEeCCcCChhhHHHHHHHHH---hcCc--cc--chhhhhhHH--hHHhhHHHHHhCCCCEEEEEE
Confidence 344555666 678888887766665554444433 3333 11 223322222 566678899999999988876
Q ss_pred CcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHH
Q 025344 123 GSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRR 190 (254)
Q Consensus 123 Gti~i~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~ 190 (254)
.+=++-.+ .-...|+.++++|+.+. +... |.. ..+++.+++.
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~--~~~E----------d~~--------------rt~~~~l~~~ 151 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVR--FSAE----------DAT--------------RTDPEFLAEV 151 (409)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEee----------ccc--------------cCCHHHHHHH
Confidence 66543332 23456788888884432 1121 110 1258999999
Q ss_pred HHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 191 AERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 191 ~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
++...++||+.|. ++|..|-..+..+.++++.+.
T Consensus 152 ~~~~~~~ga~~i~-----l~DTvG~~~P~~~~~~i~~l~ 185 (409)
T COG0119 152 VKAAIEAGADRIN-----LPDTVGVATPNEVADIIEALK 185 (409)
T ss_pred HHHHHHcCCcEEE-----ECCCcCccCHHHHHHHHHHHH
Confidence 9999999999886 577788777776666665443
No 441
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.86 E-value=58 Score=30.13 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHH
Q 025344 114 GFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 185 (254)
Q Consensus 114 GF~~IEISdGti~i--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~ 185 (254)
|+|+|||+=++-.. +.+.-.++++.+++. .-+| +.+| ++| .| |..
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~--~~iP-v~vK-----------------l~p-~~------~~~ 171 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA--YSIP-VGVK-----------------TPP-YT------DPA 171 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh--cCCC-EEEE-----------------eCC-CC------CHH
Confidence 79999999886432 456677888888774 1234 5555 222 12 355
Q ss_pred HHHHHHHHHHHc--CCcEEE
Q 025344 186 LLIRRAERCLEA--GADMIM 203 (254)
Q Consensus 186 ~~i~~~~~dLeA--GA~~Vi 203 (254)
++.+.++...++ ||+.|+
T Consensus 172 ~~~~~a~~l~~~~~G~~gi~ 191 (294)
T cd04741 172 QFDTLAEALNAFACPISFIT 191 (294)
T ss_pred HHHHHHHHHhccccCCcEEE
Confidence 666777777788 999888
No 442
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=64.74 E-value=15 Score=37.61 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCCEEEecC----------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-C-
Q 025344 104 KEYVEDCKQVGFDTIELNV----------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-S- 161 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd----------Gti-----~i-----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~-~- 161 (254)
++.+.++++||+++||++- |.- .+ +.++..++|+.+.++|++|+-.+-..+-..+-. .
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhh
Confidence 3445788999999999943 111 11 256888999999999999998876532110000 0
Q ss_pred --ccccccc----cccccCCCcc-----ccccCHHHHHHHHHHHHH-cCCcEEEEec
Q 025344 162 --DRDRAFG----AYVARAPRST-----EYVEDVDLLIRRAERCLE-AGADMIMIDS 206 (254)
Q Consensus 162 --~~d~~~~----~~~~~~~~~~-----~~~~d~~~~i~~~~~dLe-AGA~~ViiEa 206 (254)
.+.+... ..-....|.. +-..-.+.+++.++..++ -|.|=.-+.+
T Consensus 240 ~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 240 EFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDA 296 (613)
T ss_pred ccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 0000000 0000012321 111223678888888886 4888888876
No 443
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.73 E-value=44 Score=29.81 Aligned_cols=88 Identities=22% Similarity=0.322 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
..-.+.++.|+++||.+.|| |.-|+.- +.+.|.|+|-+--.. .+. ..+|+.++. +.
T Consensus 96 ~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-------------A~~~Gad~vklFPa~-~~G----~~~ik~l~~----~~ 153 (213)
T PRK06552 96 SFNRETAKICNLYQIPYLPGCMTVTEIVT-------------ALEAGSEIVKLFPGS-TLG----PSFIKAIKG----PL 153 (213)
T ss_pred CCCHHHHHHHHHcCCCEECCcCCHHHHHH-------------HHHcCCCEEEECCcc-cCC----HHHHHHHhh----hC
Confidence 44567788899999988888 4555432 246899999983211 122 344555555 23
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 148 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 148 ~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|++-.- .+| + ++ .+.+...+++||+-|-+=+.
T Consensus 154 p~ip~~----atG--G-------I~---------------~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 154 PQVNVM----VTG--G-------VN---------------LDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred CCCEEE----EEC--C-------CC---------------HHHHHHHHHCCCcEEEEchH
Confidence 322221 121 1 21 67888999999998877543
No 444
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=64.70 E-value=78 Score=28.32 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhCCceecC---Cc-----HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-----
Q 025344 69 KPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE----- 129 (254)
Q Consensus 69 ~~~l~eKi~l~~~~gV~v~~---Gt-----l~---E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~---i~~----- 129 (254)
...+.+--+++.++|+.++. +. |. +....+.-+.+++.++.|+.+|.+.|=+..+... -+.
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR 130 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH
Confidence 45578888899999998763 21 11 1111222225889999999999999988654321 122
Q ss_pred --hHHHHHHHHHHHcCCccccee
Q 025344 130 --ETLLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 130 --~~r~~lI~~~~~~G~~v~~E~ 150 (254)
+...++.+.|++.|.++.-|.
T Consensus 131 ~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 131 FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHcCCEEEEee
Confidence 233466778888898887774
No 445
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=64.69 E-value=16 Score=30.99 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEeecCcccccCC-----hhHHHHHHHHHHhCCceecCCcHHHHH
Q 025344 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (254)
Q Consensus 22 R~~GlT~V~Dk-G~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~-----~~~l~eKi~l~~~~gV~v~~Gtl~E~a 95 (254)
|..|....+|- |. +...++-+.+.. +|++||...-..-+. ...++.-+.+++.+|+.+.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 025344 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 96 ~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.-.+-++.|+++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 446
>PRK15108 biotin synthase; Provisional
Probab=64.66 E-value=1.3e+02 Score=28.56 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 025344 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 138 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~ 138 (254)
+.+.+.++.+|+.++.++. |. .-.+.++++|+.|.+.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5688889999988876542 41 226778888999999776643321 2367899999999
Q ss_pred HHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHc--CCcEEE
Q 025344 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA--GADMIM 203 (254)
Q Consensus 139 ~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeA--GA~~Vi 203 (254)
+++.|+++.+ |.-.+..| +.+++++.+..--+. ..+.|-
T Consensus 180 a~~~G~~v~s--g~i~GlgE------------------------t~ed~v~~~~~l~~l~~~~~~ip 220 (345)
T PRK15108 180 VRDAGIKVCS--GGIVGLGE------------------------TVKDRAGLLLQLANLPTPPESVP 220 (345)
T ss_pred HHHcCCceee--EEEEeCCC------------------------CHHHHHHHHHHHHhccCCCCEEE
Confidence 9999997655 33323211 367788887655444 455553
No 447
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=64.61 E-value=72 Score=32.42 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=95.4
Q ss_pred HHhhcccccEEe--ecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHHHhCC---------------c-hHHHHHH
Q 025344 47 FESMGQFVDGLK--FSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP---------------S-AFKEYVE 108 (254)
Q Consensus 47 Le~ag~yID~lK--fg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~---------------~-~~~~yl~ 108 (254)
|++-|+=+|=+- |=+||+.-.|.+.=++-|..++++=... |.-+|-|...|- + ..++=++
T Consensus 125 L~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f--~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld 202 (515)
T COG1243 125 LETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDF--GYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLD 202 (515)
T ss_pred HHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhcc--chhHHHHHHhhcccccceeEEEEecCccccCHHHHH
Confidence 667777776543 4469999999999999999999886655 544777766541 1 1467788
Q ss_pred HHHHcCCCEEEecCCccc----------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCcc
Q 025344 109 DCKQVGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (254)
Q Consensus 109 ~~k~lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~ 178 (254)
.++.+|.+.||+-.-|+. =.-++=++.-+.++++||||-..+=.--|.|
T Consensus 203 ~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs--------------------- 261 (515)
T COG1243 203 QMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGS--------------------- 261 (515)
T ss_pred HHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCC---------------------
Confidence 999999999999776662 1234556778889999999887554422221
Q ss_pred ccccCHHHHHHHHHHHHHcC---CcEE------EEecc
Q 025344 179 EYVEDVDLLIRRAERCLEAG---ADMI------MIDSD 207 (254)
Q Consensus 179 ~~~~d~~~~i~~~~~dLeAG---A~~V------iiEar 207 (254)
|.+.=++..++-++.. .|++ .||+-
T Consensus 262 ----~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT 295 (515)
T COG1243 262 ----DFERDLESFREIFEDPRFRPDMLKIYPTLVIEGT 295 (515)
T ss_pred ----ChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCc
Confidence 2333388999999999 8876 55664
No 448
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=64.56 E-value=21 Score=31.60 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 181 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~ 181 (254)
.+.+..+.+.+-|++.|||..-+- ...+.|+.+++. ++.. --+|+ |-.++
T Consensus 23 ~~~~~~~a~~~gGi~~iEvt~~~~-----~~~~~i~~l~~~-------~~~~---~~iGa------GTV~~--------- 72 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEIPLNSP-----DPFDSIAALVKA-------LGDR---ALIGA------GTVLS--------- 72 (206)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCc-----cHHHHHHHHHHH-------cCCC---cEEeE------EecCC---------
Confidence 456677888999999999986443 344577777662 3210 01221 11132
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 182 EDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 182 ~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
.++++..++|||+.++.=+
T Consensus 73 ------~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 73 ------PEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6788999999999999854
No 449
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.54 E-value=79 Score=28.50 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCceecC-C--c---HHHHHHHhCCchHHHH---HHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHH
Q 025344 73 EEVVKRAHQHDVYVST-G--D---WAEHLIRNGPSAFKEY---VEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKS 141 (254)
Q Consensus 73 ~eKi~l~~~~gV~v~~-G--t---l~E~a~~qg~~~~~~y---l~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~ 141 (254)
++.++.++++|+..+. | + .++... +...++++ ++.+++.|+.. -.. -|. .-+.++..+.++.+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~--~~~s~~~~~~ai~~l~~~Gi~v-~~~~i~Gl-~et~~d~~~~~~~l~~ 198 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNII--STHTYDDRVDTLENAKKAGLKV-CSGGIFGL-GETVEDRIGLALALAN 198 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhcc--CCCCHHHHHHHHHHHHHcCCEE-EEeEEEeC-CCCHHHHHHHHHHHHh
Confidence 5778889999985443 3 1 222221 22366666 56778889862 111 232 3467888899999998
Q ss_pred cCCc
Q 025344 142 AGLK 145 (254)
Q Consensus 142 ~G~~ 145 (254)
.|..
T Consensus 199 l~~~ 202 (296)
T TIGR00433 199 LPPE 202 (296)
T ss_pred CCCC
Confidence 8765
No 450
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=64.46 E-value=41 Score=31.86 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHcC-CcEEEE
Q 025344 183 DVDLLIRRAERCLEAG-ADMIMI 204 (254)
Q Consensus 183 d~~~~i~~~~~dLeAG-A~~Vii 204 (254)
|.++.++.++.--++| +|+|-|
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEe
Confidence 5788889999888998 899988
No 451
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=64.41 E-value=9.8 Score=36.73 Aligned_cols=61 Identities=30% Similarity=0.436 Sum_probs=39.4
Q ss_pred CCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-------hHHHHHHHHHHHcCCcccceeeee
Q 025344 82 HDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-------ETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 82 ~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~-------~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
.||-|||| ..+| ...+|++.++++||+.|=.| +-+|+ +...++++.|++.||+|...+..+
T Consensus 2 lGiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTS---L~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 2 LGISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTS---LHIPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp EEEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEE---E---------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred cEEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECC---CCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36677776 3232 46789999999999888776 34443 344578888999999988777664
No 452
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=64.36 E-value=72 Score=29.27 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=67.1
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCc----HHHHHHHh--C----------CchH
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--G----------PSAF 103 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gt----l~E~a~~q--g----------~~~~ 103 (254)
...+.+++.-+++|| +|.+++.--..+.+..-|+..++. +++++--| -+|.|+.. | ..+.
T Consensus 29 ~~A~~~~~~GAdiID---Vg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~ 105 (261)
T PRK07535 29 KLALKQAEAGADYLD---VNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKL 105 (261)
T ss_pred HHHHHHHHCCCCEEE---ECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccC
Confidence 344555666666666 688876544445677788888664 88888764 48888875 3 1236
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCC--hh----HHHHHHHHHHHcCC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIP--EE----TLLRYVRLVKSAGL 144 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~--~~----~r~~lI~~~~~~G~ 144 (254)
++.+..+++.|...|=+-...-.+| .+ ...++++++.+.|+
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7889999999999996543222234 33 33456777888887
No 453
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=63.99 E-value=1.1e+02 Score=29.34 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCCceeEecCCC---CCCcchhHHHHHHHhhc--ccccEEeec------------------------Ccc-----cccCC
Q 025344 23 RFGVTEMRSPHY---TLSSSHNVLEDIFESMG--QFVDGLKFS------------------------GGS-----HSLMP 68 (254)
Q Consensus 23 ~~GlT~V~DkG~---~~~~g~~~~~DlLe~ag--~yID~lKfg------------------------~GT-----~~l~~ 68 (254)
..|+|.|+|-+. +...+...+++.++.+. .|+|+.-.+ .+. ....+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 459999998753 12224567777777663 466663322 111 01235
Q ss_pred hhHHHHHHHHHHhCCceecC--Cc--HHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 025344 69 KPFIEEVVKRAHQHDVYVST--GD--WAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (254)
Q Consensus 69 ~~~l~eKi~l~~~~gV~v~~--Gt--l~E~a~~--------------q------g~~~~~~yl~~~k~lGF~~IEISdGt 124 (254)
.+.+++-++.++++|..++. +. ++..... + -...+.++++.+++.|... =|+-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56688888888888876654 32 2221110 0 0125788888999998543 2222
Q ss_pred ccCChhHHHHHHHHHHHcCCcccceeee
Q 025344 125 LEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 125 i~i~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
++...=.++|+.++..|+.+..|+..
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~~ 263 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETCP 263 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEecc
Confidence 22355678888999999887766543
No 454
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=63.94 E-value=30 Score=32.07 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=49.4
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccc
Q 025344 110 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (254)
Q Consensus 110 ~k~lGF~~IEISdG----------ti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~ 179 (254)
+.+.||++|=+.|+ +..++.++.+..++.+.+. -. .|=+-. ++| |+.+
T Consensus 31 ~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~-~~-~p~vva-----D~p------fg~y--------- 88 (264)
T PRK00311 31 FDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARG-AP-RALVVA-----DMP------FGSY--------- 88 (264)
T ss_pred HHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhc-CC-CCcEEE-----eCC------CCCc---------
Confidence 35569999976543 4578899998888887762 11 000001 111 1111
Q ss_pred cccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 025344 180 YVEDVDLLIRRAERCLE-AGADMIMIDSD 207 (254)
Q Consensus 180 ~~~d~~~~i~~~~~dLe-AGA~~ViiEar 207 (254)
..|+++.++.+.+.++ +||+.|-||.-
T Consensus 89 -~~~~~~av~~a~r~~~~aGa~aVkiEdg 116 (264)
T PRK00311 89 -QASPEQALRNAGRLMKEAGAHAVKLEGG 116 (264)
T ss_pred -cCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 1258888999999999 99999999983
No 455
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=63.82 E-value=55 Score=29.87 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=52.4
Q ss_pred HHHHHHHHHhC-CceecCCc----HHHHHHHhCCch--------HHHHHHHHHHcCCCEEEecCCcccCC----------
Q 025344 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPSA--------FKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (254)
Q Consensus 72 l~eKi~l~~~~-gV~v~~Gt----l~E~a~~qg~~~--------~~~yl~~~k~lGF~~IEISdGti~i~---------- 128 (254)
|+..++.+++. +++++--| -+|.|+..|.+- .++.+..+++.|..+|=+.+..+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998654 588888776221 45689999999999999876433222
Q ss_pred hhH----HHHHHHHHHHcCCc
Q 025344 129 EET----LLRYVRLVKSAGLK 145 (254)
Q Consensus 129 ~~~----r~~lI~~~~~~G~~ 145 (254)
.++ ..+.|+++.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 122 33556777887773
No 456
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=63.78 E-value=14 Score=36.31 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----------------ChhHHHHHHHHHHHcCCcccceeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----------------~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.+=++++++|||++|.||==+- +. +.++..+||+.+.++|++|+-.+-.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44557788899999998864211 11 3678999999999999998766554
Q ss_pred e
Q 025344 153 M 153 (254)
Q Consensus 153 k 153 (254)
.
T Consensus 104 N 104 (479)
T PRK09441 104 N 104 (479)
T ss_pred c
Confidence 3
No 457
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=63.73 E-value=16 Score=34.43 Aligned_cols=91 Identities=20% Similarity=0.360 Sum_probs=48.4
Q ss_pred ccccEEeecCcccccCChhHHHHHHHHHHhCCceec-----C-C---cHHHHHHHhCCch----HHHHHHHHHHcCCCEE
Q 025344 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPSA----FKEYVEDCKQVGFDTI 118 (254)
Q Consensus 52 ~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~-----~-G---tl~E~a~~qg~~~----~~~yl~~~k~lGF~~I 118 (254)
+|||..=. |.-..+..+ =-.=|+.||+|||+|. . | .|++.++.+..+. +++.++.|+-+|||..
T Consensus 27 ~yiD~fvy-wsh~~i~iP--~~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw 103 (311)
T PF03644_consen 27 QYIDIFVY-WSHGLITIP--PAGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGW 103 (311)
T ss_dssp GG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EE
T ss_pred cceeeEee-cccccccCC--CchhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCce
Confidence 68887533 544444432 2356799999999885 2 2 2888888843222 7899999999999986
Q ss_pred EecCCccc---CChhHHHHHHHHHHHcCCc
Q 025344 119 ELNVGSLE---IPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 119 EISdGti~---i~~~~r~~lI~~~~~~G~~ 145 (254)
=|+-=+-- -..+.....++.+++..-+
T Consensus 104 ~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~ 133 (311)
T PF03644_consen 104 LINIETPLSGPEDAENLIDFLKYLRKEAHE 133 (311)
T ss_dssp EEEEEESSTTGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCchhHHHHHHHHHHHHHHHhhc
Confidence 44422211 1234444556655554333
No 458
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=63.41 E-value=42 Score=30.14 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=81.5
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcH-HHHHHHhCCchHHHHHHHHHHcCCC
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDW-AEHLIRNGPSAFKEYVEDCKQVGFD 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl-~E~a~~qg~~~~~~yl~~~k~lGF~ 116 (254)
....++.+.+.|-+| ++.+-.+.|. .+..--++++..+|.+++ =+| +=...... ++.+ .+++-+.|-+
T Consensus 20 t~~~i~~~~~~A~~~------~~~avcv~p~-~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~--K~~e-~~~Ai~~GA~ 89 (221)
T PRK00507 20 TEEDIDKLCDEAKEY------GFASVCVNPS-YVKLAAELLKGSDVKVCTVIGFPLGANTTAV--KAFE-AKDAIANGAD 89 (221)
T ss_pred CHHHHHHHHHHHHHh------CCeEEEECHH-HHHHHHHHhCCCCCeEEEEecccCCCChHHH--HHHH-HHHHHHcCCc
Confidence 456777777777654 7777777765 577777777777787764 122 11111111 2222 2345567888
Q ss_pred EEEecCCcccCChhHHHHH---HHHHHHc--C--CcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 117 TIELNVGSLEIPEETLLRY---VRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~l---I~~~~~~--G--~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
-|++--..-.+...++..+ |+.+++. + +||+-|.+. + +.+++++
T Consensus 90 EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~------------------L-----------~~e~i~~ 140 (221)
T PRK00507 90 EIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCL------------------L-----------TDEEKVK 140 (221)
T ss_pred eEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCc------------------C-----------CHHHHHH
Confidence 8876544333333333333 3333331 2 233322222 2 3677888
Q ss_pred HHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC
Q 025344 190 RAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 229 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~ 229 (254)
..+-++++|||+|=+ +-|. .. |.-..+.+..+.+.++
T Consensus 141 a~~~~~~agadfIKT-sTG~-~~-~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 141 ACEIAKEAGADFVKT-STGF-ST-GGATVEDVKLMRETVG 177 (221)
T ss_pred HHHHHHHhCCCEEEc-CCCC-CC-CCCCHHHHHHHHHHhC
Confidence 888999999995544 2343 22 3345666666655554
No 459
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.37 E-value=19 Score=29.87 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=61.7
Q ss_pred chhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 025344 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (254)
Q Consensus 39 g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF-~ 116 (254)
|.+.+..+|+.+|- +.+=+|- -.| .++-++.+.+++..+-. -.+.= +.-..+++.++.+++.|. +
T Consensus 15 Gkniv~~~L~~~Gf--eVidLG~----~v~---~e~~v~aa~~~~adiVglS~L~t----~~~~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAGF--NVVNLGV----LSP---QEEFIDAAIETDADAILVSSLYG----HGEIDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCCC--EEEECCC----CCC---HHHHHHHHHHcCCCEEEEecccc----CCHHHHHHHHHHHHHCCCCC
Confidence 56677778887663 4444552 122 56777778888775432 11110 000145677788899998 6
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 117 TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
..=+=-|.+.+|.+++.+-++++++.||.
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 55566677889999999999999998775
No 460
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.34 E-value=67 Score=28.47 Aligned_cols=82 Identities=11% Similarity=0.249 Sum_probs=52.7
Q ss_pred HHHHHhhccc-ccEEeecCccccc-----CChhHHHHHHHHHHhCCceecC-CcHH-------HHHHHhCCchHHHHHHH
Q 025344 44 EDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVED 109 (254)
Q Consensus 44 ~DlLe~ag~y-ID~lKfg~GT~~l-----~~~~~l~eKi~l~~~~gV~v~~-Gtl~-------E~a~~qg~~~~~~yl~~ 109 (254)
.+-++.+.++ +|.+-|-.+.... ++.+.+++.-++++++||.++. +.+. +....+.-+.+.+.++.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455566666 6666665554433 3445688888889999997764 4321 11122212257888999
Q ss_pred HHHcCCCEEEecCCcc
Q 025344 110 CKQVGFDTIELNVGSL 125 (254)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (254)
|+.+|.+.|=+--|+.
T Consensus 93 A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 93 CEELGIKALVFHPGSY 108 (273)
T ss_pred HHHcCCCEEEEccccc
Confidence 9999999998877765
No 461
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=63.25 E-value=20 Score=37.56 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 69 ~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
++-.++-|+.+|+.||.+. +|.--+.|-. -++++|++.+ .-...+++|.++|+..++.|-.
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 4558889999999998544 6754443322 2477887643 4578999999999999998854
No 462
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.22 E-value=35 Score=30.27 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhCCceecC---CcH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch-----
Q 025344 69 KPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE----- 129 (254)
Q Consensus 69 ~~~l~eKi~l~~~~gV~v~~---Gtl--~------E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i-~~----- 129 (254)
...+++.-+.++++||.++. ++. + +....+....+++.++.|+.||.+.|=+..+.. .- +.
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR 130 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH
Confidence 44588888899999997652 210 1 111111122688999999999999998753321 11 11
Q ss_pred --hHHHHHHHHHHHcCCcccceee
Q 025344 130 --ETLLRYVRLVKSAGLKAKPKFA 151 (254)
Q Consensus 130 --~~r~~lI~~~~~~G~~v~~E~g 151 (254)
+...++.+.++++|.++.-|..
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEec
Confidence 2245677888899998887774
No 463
>PRK06256 biotin synthase; Validated
Probab=63.11 E-value=53 Score=30.51 Aligned_cols=144 Identities=21% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHH
Q 025344 71 FIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLV 139 (254)
Q Consensus 71 ~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---------i~i~~~~r~~lI~~~ 139 (254)
.+.+.++..+++ ++.++. .|. .-++.++.+++.|++.|-++--| -.-+.+++.+.|+.+
T Consensus 127 ~~~e~i~~i~~~~~i~~~~~~g~----------l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a 196 (336)
T PRK06256 127 QVVEAVKAIKEETDLEICACLGL----------LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMV 196 (336)
T ss_pred HHHHHHHHHHhcCCCcEEecCCc----------CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHH
Confidence 466667666654 443332 121 23577888999999998763211 123568889999999
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec------ccccccC
Q 025344 140 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS------DDVCKHA 213 (254)
Q Consensus 140 ~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa------rgi~d~~ 213 (254)
++.|+++.+-+=+ +.. ++.+++++.+..--+.|.+.|.+-- --+++.
T Consensus 197 ~~~Gi~v~~~~I~--Glg------------------------Et~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~- 249 (336)
T PRK06256 197 KAAGIEPCSGGII--GMG------------------------ESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENH- 249 (336)
T ss_pred HHcCCeeccCeEE--eCC------------------------CCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCC-
Confidence 9999987653222 211 1366777777777788988776632 123332
Q ss_pred CCccHHHHHHHH--hc-cCCCceE-----EecCCchhHHHHHHHhCCC
Q 025344 214 DSLRADIIAKVI--GR-LGLEKTM-----FEATNPRTSEWFIRRYGPK 253 (254)
Q Consensus 214 g~~r~d~i~~ii--~~-l~~~kli-----fEAP~k~qQ~~~I~~~Gp~ 253 (254)
..+..+.+-+++ .+ +-++..| .|+-....|.+-. .|.|
T Consensus 250 ~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~--~g~~ 295 (336)
T PRK06256 250 PELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL--GGAN 295 (336)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh--ccCc
Confidence 233444443333 22 2244444 3445556666655 3654
No 464
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.05 E-value=56 Score=28.95 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCceec----C-CcHHHH-----------HHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-H
Q 025344 72 IEEVVKRAHQHDVYVS----T-GDWAEH-----------LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET-L 132 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~----~-Gtl~E~-----------a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~-r 132 (254)
+++.-+++.++|+.++ | |+|... .-... .+++.++.|+++|.+.|-+--|... .+.++ +
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~ 119 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRD--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIH 119 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHH--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHH
Confidence 7777788889999875 2 554311 11112 5889999999999999988666542 22222 2
Q ss_pred -------HHHHHHHHHcCCccccee
Q 025344 133 -------LRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 133 -------~~lI~~~~~~G~~v~~E~ 150 (254)
.++.+.+++.|+++.-|.
T Consensus 120 ~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 120 ATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 344566777888766664
No 465
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.03 E-value=36 Score=32.18 Aligned_cols=41 Identities=17% Similarity=0.440 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccCCCceEEecC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 238 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~~~klifEAP 238 (254)
+++++..++||||.||++ |+..+.+.+.+..++ .+++.||.
T Consensus 215 leea~eA~~aGaDiImLD---------nmspe~l~~av~~~~-~~~~lEaS 255 (294)
T PRK06978 215 LAQLETALAHGAQSVLLD---------NFTLDMMREAVRVTA-GRAVLEVS 255 (294)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHhhc-CCeEEEEE
Confidence 788888999999999995 666666666666553 35666665
No 466
>PRK10551 phage resistance protein; Provisional
Probab=63.00 E-value=60 Score=32.47 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=59.6
Q ss_pred HHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecC---Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 43 ~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~---Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
+..+++..+..-.-+.|-.--..+.+.....+.++.+|++|+.+.- || .-- +..++++-+|.|
T Consensus 370 l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtg~ss-------------l~~L~~l~vD~l 436 (518)
T PRK10551 370 VQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSA-------------LIYLERFTLDYL 436 (518)
T ss_pred HHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEECCCCCchh-------------HHHHHhCCCCEE
Confidence 3444544443322344443333343434467888999999998875 42 321 334467889999
Q ss_pred EecCCccc-CChh-----HHHHHHHHHHHcCCcccceeee
Q 025344 119 ELNVGSLE-IPEE-----TLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 119 EISdGti~-i~~~-----~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
-|+-+++. +..+ .-..+|+.+++.|++|+.| ||
T Consensus 437 KID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE-GV 475 (518)
T PRK10551 437 KIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE-GV 475 (518)
T ss_pred EECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE-eC
Confidence 99987774 3333 3356899999988887776 55
No 467
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=62.88 E-value=1.3e+02 Score=28.03 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=86.6
Q ss_pred eecCcccccCChhHHHHHHHHHHhCCceecC----Cc--HH--HHHHH------------------hCCchHHHHHHHHH
Q 025344 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--WA--EHLIR------------------NGPSAFKEYVEDCK 111 (254)
Q Consensus 58 Kfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~----Gt--l~--E~a~~------------------qg~~~~~~yl~~~k 111 (254)
+++-|.+-+++-+.++.-|+-|.+.+.++-. ++ ++ +.+.. ++ .--+.+..|-
T Consensus 16 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~--~~~e~i~~ai 93 (287)
T PF01116_consen 16 GYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHG--KDFEDIKRAI 93 (287)
T ss_dssp T-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE---SHHHHHHHH
T ss_pred CCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccC--CCHHHHHHHH
Confidence 3455556666666666666666666654432 11 11 22111 11 2245667788
Q ss_pred HcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 112 QVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.||+.|=+.--..++.+-- =+++++.|+..|.-|--|+|.=-+. +-+...+......+| ||++..+
T Consensus 94 ~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~-ed~~~~~~~~~~~~T----------dP~~a~~ 162 (287)
T PF01116_consen 94 DAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGK-EDGIESEEETESLYT----------DPEEAKE 162 (287)
T ss_dssp HHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSS-CTTCSSSTT-TTCSS----------SHHHHHH
T ss_pred HhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeecc-CCCcccccccccccc----------CHHHHHH
Confidence 88999998866544433322 2467888999999999999994221 110000000011222 6666555
Q ss_pred HHHHHHHcCCcEEEEecc---ccccc--CCCccHHHHHHHHhcc
Q 025344 190 RAERCLEAGADMIMIDSD---DVCKH--ADSLRADIIAKVIGRL 228 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEar---gi~d~--~g~~r~d~i~~ii~~l 228 (254)
.++ +-|+|.+=+==- |.|.. .-+++-+.+++|-+.+
T Consensus 163 Fv~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 163 FVE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp HHH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred HHH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 554 458888655432 99999 7789999999999877
No 468
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=62.86 E-value=20 Score=32.02 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcC--CCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 103 FKEYVEDCKQVG--FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 103 ~~~yl~~~k~lG--F~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
+++-++.++++| +.+++|-++.+. +. =.+.|+.+++.|++++
T Consensus 14 ~~~~l~~~~~~~~~~~~ikvg~~~f~-~~--G~~~i~~l~~~~~~i~ 57 (230)
T PRK00230 14 KEEALAFLDQLDPAVLFVKVGMELFT-AG--GPQFVRELKQRGFKVF 57 (230)
T ss_pred HHHHHHHHHhcCCcccEEEEcHHHHH-hc--CHHHHHHHHhcCCCEE
Confidence 444444555544 345555554443 11 1244555554444443
No 469
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=62.81 E-value=85 Score=27.47 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCceecCCcHHHHHH----------HhCCchHHHHHHH
Q 025344 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI----------RNGPSAFKEYVED 109 (254)
Q Consensus 40 ~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~Gtl~E~a~----------~qg~~~~~~yl~~ 109 (254)
...+++.++.-++-||+.=.-..-..-.-.+.+++..+++|++|+++.- |..+ .. .+..-.+.
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii----e~~~~g~~~~~~~~~~---~i~~~~~~ 151 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIA----WMYPRGPAVKNEKDPD---LIAYAARI 151 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE----EEeccCCcccCccCHH---HHHHHHHH
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+.++|.|.|-++... +...+=+.++.....|+---|.+-. |+++..+
T Consensus 152 a~~~GaD~Ik~~~~~------~~~~~~~i~~~~~~pvv~~GG~~~~---------------------------~~~~~l~ 198 (235)
T cd00958 152 GAELGADIVKTKYTG------DAESFKEVVEGCPVPVVIAGGPKKD---------------------------SEEEFLK 198 (235)
T ss_pred HHHHCCCEEEecCCC------CHHHHHHHHhcCCCCEEEeCCCCCC---------------------------CHHHHHH
Q ss_pred HHHHHHHcCCcEEEE
Q 025344 190 RAERCLEAGADMIMI 204 (254)
Q Consensus 190 ~~~~dLeAGA~~Vii 204 (254)
.++..+++||+-|.+
T Consensus 199 ~~~~~~~~Ga~gv~v 213 (235)
T cd00958 199 MVYDAMEAGAAGVAV 213 (235)
T ss_pred HHHHHHHcCCcEEEe
No 470
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=62.73 E-value=17 Score=35.20 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHhCCceecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 025344 66 LMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (254)
Q Consensus 66 l~~~~~l~eKi~l~~~~gV~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 121 (254)
|||.+.|++..++||+||+++.- |. |+..+..-|+ ...+|- -|||.|-|.
T Consensus 146 Vy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~-~~~~~~-----~~~D~v~~~ 197 (342)
T COG2008 146 VYPLDELEAISAVCKEHGLPLHMDGARLANALVALGV-ALKTIK-----SYVDSVSFC 197 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCC-CHHHHH-----hhCCEEEEe
Confidence 99999999999999999999998 74 9999988873 444443 466666664
No 471
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=62.63 E-value=42 Score=31.87 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcC--CCEEEecCCcccC-------ChhHHHHHHHHHHHc--CCc---ccceeeeecCCCCCCCcccccc
Q 025344 102 AFKEYVEDCKQVG--FDTIELNVGSLEI-------PEETLLRYVRLVKSA--GLK---AKPKFAVMFNKSDIPSDRDRAF 167 (254)
Q Consensus 102 ~~~~yl~~~k~lG--F~~IEISdGti~i-------~~~~r~~lI~~~~~~--G~~---v~~E~g~k~~~s~v~~~~d~~~ 167 (254)
..++|.+.++.++ .|+||++-.+-.. ..+...++++.+++. ++. -+| +.+|
T Consensus 152 ~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~P-v~vK-------------- 216 (335)
T TIGR01036 152 AKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVP-VLVK-------------- 216 (335)
T ss_pred CHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCc-eEEE--------------
Confidence 6889999999999 9999997543332 234555666666652 000 033 3443
Q ss_pred ccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEe
Q 025344 168 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiE 205 (254)
++|. + +-+++.+.++...++||+-|++=
T Consensus 217 ---LsP~-~------~~~~i~~ia~~~~~~GadGi~l~ 244 (335)
T TIGR01036 217 ---IAPD-L------TESDLEDIADSLVELGIDGVIAT 244 (335)
T ss_pred ---eCCC-C------CHHHHHHHHHHHHHhCCcEEEEE
Confidence 2221 0 23467778888899999988863
No 472
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=62.60 E-value=44 Score=29.57 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=45.5
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
+...|.++|.|.- ..+.+...++++.+++.|-+++-=++-- . + +-+.+++.+
T Consensus 88 ~~~~~~d~vDiEl---~~~~~~~~~l~~~~~~~~~kvI~S~H~f---~-----~-----------------tp~~~~l~~ 139 (228)
T TIGR01093 88 ADSPGPDFVDIEL---FLPDDAVKELINIAKKGGTKIIMSYHDF---Q-----K-----------------TPSWEEIVE 139 (228)
T ss_pred HHhCCCCEEEEEc---cCCHHHHHHHHHHHHHCCCEEEEeccCC---C-----C-----------------CCCHHHHHH
Confidence 3667889988763 4466777788888888877766544321 1 1 114677888
Q ss_pred HHHHHHHcCCcEEEE
Q 025344 190 RAERCLEAGADMIMI 204 (254)
Q Consensus 190 ~~~~dLeAGA~~Vii 204 (254)
..++..+.|||.|=+
T Consensus 140 ~~~~~~~~gaDivKi 154 (228)
T TIGR01093 140 RLEKALSYGADIVKI 154 (228)
T ss_pred HHHHHHHhCCCEEEE
Confidence 888889999887633
No 473
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=62.56 E-value=11 Score=30.23 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 025344 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
+...+.+++|.++|...|=+-.| ..-.++++.++++|++++
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999888 555689999999999976
No 474
>PRK15447 putative protease; Provisional
Probab=62.54 E-value=39 Score=31.45 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~G~~v 146 (254)
++..|...+.+.|.|+|=+..... .++.++..++|++++++|-+|
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkv 64 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEV 64 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 899999999999999999986543 489999999999999988553
No 475
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=62.52 E-value=44 Score=28.98 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 025344 129 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 208 (254)
Q Consensus 129 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEarg 208 (254)
...+..++..+...|..+.+..+...+.... ..++ ...-.+.++..|+.| ..+|+=+-.
T Consensus 85 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~~~~i~~~l~~~-~ipVv~g~~ 143 (242)
T PF00696_consen 85 DALLDEIVSAGERLGAHAVGLSLSDGGISAA--KRDA------------------REVDKEAIRELLEQG-IIPVVSGFA 143 (242)
T ss_dssp HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEE--EEES------------------SEEHHHHHHHHHHTT-SEEEEESEE
T ss_pred chhHHHHHHhhhhhhHHHHhhhhhcccchhh--hhhh------------------hhhHHHHHHHHHHCC-CEEEEeCCc
Confidence 5566677888888888777766664322110 0000 011256666777776 666666655
Q ss_pred ccccCC------CccHHHHHHHH-hccCCCceEE
Q 025344 209 VCKHAD------SLRADIIAKVI-GRLGLEKTMF 235 (254)
Q Consensus 209 i~d~~g------~~r~d~i~~ii-~~l~~~klif 235 (254)
.++.+| ++..|.++..+ ..++.++++|
T Consensus 144 ~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~ 177 (242)
T PF00696_consen 144 GIDDDGEVTTLGNVSSDYIAALLAAALGADKLIF 177 (242)
T ss_dssp EEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEE
T ss_pred ccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhh
Confidence 455544 55677776655 6788887776
No 476
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=62.50 E-value=15 Score=37.52 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCEEEecC------------------CcccC-----------C-------hhHHHHHHHHHHHcCCc
Q 025344 102 AFKEYVEDCKQVGFDTIELNV------------------GSLEI-----------P-------EETLLRYVRLVKSAGLK 145 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd------------------Gti~i-----------~-------~~~r~~lI~~~~~~G~~ 145 (254)
.+.+-|.++++||+++||++= |.-.. + .++..++|+.+.++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 456778999999999999842 11111 1 37899999999999999
Q ss_pred ccceeeee
Q 025344 146 AKPKFAVM 153 (254)
Q Consensus 146 v~~E~g~k 153 (254)
|+-.+-..
T Consensus 245 VilDvV~N 252 (605)
T TIGR02104 245 VIMDVVYN 252 (605)
T ss_pred EEEEEEcC
Confidence 99887664
No 477
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=62.38 E-value=21 Score=37.27 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 68 ~~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
+++-.++-|+.+|+.||.+. +|.=-+.|- .-++++|++.+ +-.+.+++|.++|+..++.|-.
T Consensus 442 ~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~-----------aIA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~~ 505 (673)
T PRK14010 442 IKDGLVERFRELREMGIETVMCTGDNELTAA-----------TIAKEAGVDRF-----VAECKPEDKINVIREEQAKGHI 505 (673)
T ss_pred CcHHHHHHHHHHHHCCCeEEEECCCCHHHHH-----------HHHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCCE
Confidence 45668899999999999543 575333332 23478888742 5678999999999999998855
Q ss_pred c
Q 025344 146 A 146 (254)
Q Consensus 146 v 146 (254)
|
T Consensus 506 V 506 (673)
T PRK14010 506 V 506 (673)
T ss_pred E
Confidence 4
No 478
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.29 E-value=15 Score=37.40 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 025344 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----~~~~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
+.+=|+++++||+++|.++==+- .| +.++..+||+.|.++|++|+-.+-.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 55557899999999999975222 22 2378999999999999998876655
No 479
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=62.10 E-value=1.3e+02 Score=27.53 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=85.5
Q ss_pred hHHHHHHHhhccc-ccEEeecCcccccCChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 025344 41 NVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 41 ~~~~DlLe~ag~y-ID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
..+-+-++...++ +|++=+.||...-+....+.--..+.+++|+.+.+= |-- -.++..++..+..++++|++.|
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r----~~n~~~l~~~L~~~~~~Gi~nv 90 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI----GATREEIREILREYRELGIRHI 90 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec----CCCHHHHHHHHHHHHHCCCCEE
Confidence 3444445666677 999999999876666665655555555789977663 321 1233368899999999999988
Q ss_pred EecCCccc--------CChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHH
Q 025344 119 ELNVGSLE--------IPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIR 189 (254)
Q Consensus 119 EISdGti~--------i~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~ 189 (254)
=+=.|--. -+.+.=.+||+.+++. | ..-+|+= .-+ .+.+. ..+.++.++
T Consensus 91 L~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~---~f~ig~a---~~P--eghp~--------------~~~~~~~~~ 148 (272)
T TIGR00676 91 LALRGDPPKGEGTPTPGGFNYASELVEFIRNEFG---DFDIGVA---AYP--EKHPE--------------APNLEEDIE 148 (272)
T ss_pred EEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC---CeeEEEE---eCC--CCCCC--------------CCCHHHHHH
Confidence 74333221 1223345667766663 2 0123331 000 11110 124667789
Q ss_pred HHHHHHHcCCcEEEEec
Q 025344 190 RAERCLEAGADMIMIDS 206 (254)
Q Consensus 190 ~~~~dLeAGA~~ViiEa 206 (254)
.+++-++|||+++|.--
T Consensus 149 ~L~~K~~aGA~f~iTQ~ 165 (272)
T TIGR00676 149 NLKRKVDAGADYAITQL 165 (272)
T ss_pred HHHHHHHcCCCeEeecc
Confidence 99999999999998754
No 480
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=62.10 E-value=96 Score=26.12 Aligned_cols=94 Identities=20% Similarity=0.319 Sum_probs=55.2
Q ss_pred chhHHHHHHHhhccc-ccEEeecCcccccCC-----hhHHHHHHHHH-HhCCceecCCcHHHHHHHhCCchHHHHHHHHH
Q 025344 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMP-----KPFIEEVVKRA-HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (254)
Q Consensus 39 g~~~~~DlLe~ag~y-ID~lKfg~GT~~l~~-----~~~l~eKi~l~-~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k 111 (254)
-+..+.+.++.+-+. +|.+-|+..--.+.+ .+.+++..+.+ +..+|.+. . + ...+|++.|.
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~---------~-~--d~~~~~~~~~ 77 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLM---------V-E--NPERYIEAFA 77 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEee---------e-C--CHHHHHHHHH
Confidence 345667777777777 898888542222222 12333333332 11111111 1 2 2356899999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 025344 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (254)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~ 148 (254)
+.|.+.|=|-++.. ++..+.++.+++.|+.+..
T Consensus 78 ~~g~dgv~vh~~~~----~~~~~~~~~~~~~~~~~g~ 110 (211)
T cd00429 78 KAGADIITFHAEAT----DHLHRTIQLIKELGMKAGV 110 (211)
T ss_pred HcCCCEEEECccch----hhHHHHHHHHHHCCCeEEE
Confidence 99999998888754 4456778888888776443
No 481
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=62.08 E-value=15 Score=38.89 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------------------cCChhHHHHHHHHHHHcCCcccceeeee
Q 025344 104 KEYVEDCKQVGFDTIELNVGSL--------------------EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti--------------------~i~~~~r~~lI~~~~~~G~~v~~E~g~k 153 (254)
++-+.++|+|||++|+++-=+- -=+.++..++|+.+.++|++|+-.+-..
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4458899999999999874211 0124788899999999999998877654
No 482
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=62.08 E-value=76 Score=31.16 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=75.2
Q ss_pred cccccEEeecCcccccCChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCC
Q 025344 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIP 128 (254)
Q Consensus 51 g~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~i~ 128 (254)
|.-++-+=||+||..+.+ +.|++.++.++++ ++ -|+.+.-+|+. -+++++.++++ |+.|+|- --+.+
T Consensus 99 ~~~~~siy~GGGTPs~l~-~~L~~ll~~i~~~f~i-------~eis~E~~P~~lt~e~L~~l~~~-vnrlsiG--VQS~~ 167 (433)
T PRK08629 99 GYDFESMYVGGGTTTILE-DELAKTLELAKKLFSI-------KEVSCESDPNHLDPPKLKQLKGL-IDRLSIG--VQSFN 167 (433)
T ss_pred CCceEEEEECCCccccCH-HHHHHHHHHHHHhCCC-------ceEEEEeCcccCCHHHHHHHHHh-CCeEEEe--cCcCC
Confidence 445888999999999974 6799999999886 22 14443334443 35788899999 9987664 44444
Q ss_pred hhHH------------HHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHH
Q 025344 129 EETL------------LRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 195 (254)
Q Consensus 129 ~~~r------------~~lI~~~~~~-G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dL 195 (254)
++.. .++++.++.. +. .+.+++-.= +| + | -+|.+++.+.++..+
T Consensus 168 d~vLk~~gR~h~~~~~~~~~~~l~~~~~~--~~~v~~DlI---~G----------l-P-------gqT~e~~~~~l~~~~ 224 (433)
T PRK08629 168 DDILKMVDRYEKFGSGQETFEKIMKAKGL--FPIINVDLI---FN----------F-P-------GQTDEVLQHDLDIAK 224 (433)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHHHhcc--CCeEEEEEE---cc----------C-C-------CCCHHHHHHHHHHHH
Confidence 3332 3334444432 11 122332110 01 1 1 125888999999999
Q ss_pred HcCCcEEEEe
Q 025344 196 EAGADMIMID 205 (254)
Q Consensus 196 eAGA~~ViiE 205 (254)
+.|.+.|-+=
T Consensus 225 ~l~p~~is~y 234 (433)
T PRK08629 225 RLDPRQITTY 234 (433)
T ss_pred hCCCCEEEEc
Confidence 9999987654
No 483
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=62.04 E-value=39 Score=29.71 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCceecC-----CcHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH--
Q 025344 72 IEEVVKRAHQHDVYVST-----GDWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET-- 131 (254)
Q Consensus 72 l~eKi~l~~~~gV~v~~-----Gtl~E-----------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~-- 131 (254)
+.+.-+++.++|+.++. +.|.. ..-.. +.+++.++.|++||.+.|-+-.|... .+.++
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 118 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR 118 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH
Confidence 77778899999997663 22210 00011 26888999999999999998888653 22222
Q ss_pred ------HHHHHHHHHHcCCccccee
Q 025344 132 ------LLRYVRLVKSAGLKAKPKF 150 (254)
Q Consensus 132 ------r~~lI~~~~~~G~~v~~E~ 150 (254)
..++.+.|++.|.++.-|.
T Consensus 119 ~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 119 ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3466777888898877775
No 484
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=62.01 E-value=40 Score=31.08 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=66.2
Q ss_pred hHHHHHHHhhcccccEEeecCcccccCChhH---HHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHH-HcCC
Q 025344 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGF 115 (254)
Q Consensus 41 ~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~---l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k-~lGF 115 (254)
.+...+++..++|+..+|+|+.-..-+..+. |++.++.+|++|..|..- =+..+- +.+..|.+.+- .+|+
T Consensus 41 ~f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~ 115 (261)
T TIGR02127 41 AFCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHA 115 (261)
T ss_pred HHHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCC
Confidence 3457899999999999999997666664433 677779999999877653 233332 24455665555 7899
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHcC
Q 025344 116 DTIELNVGSLEIPEETLLRYVRLVKSAG 143 (254)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (254)
|+|-|+- -+..+....+++.+.+.|
T Consensus 116 D~vTvh~---~~G~d~l~~~~~~~~~~~ 140 (261)
T TIGR02127 116 DALTVSP---YLGLDSLRPFLEYARANG 140 (261)
T ss_pred CEEEECC---cCCHHHHHHHHHHHhhcC
Confidence 9999884 555666666676666544
No 485
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=61.60 E-value=43 Score=31.77 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=77.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHh-C-Cc
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~q-g-~~ 101 (254)
|.-++=|-+.+-++..++++++....++++..---=|.-.-|..+=.++++.++++|+ .++-| ++-+..+.. | +.
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~ 141 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH 141 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4444545433226789999999888765432211112223466666789999999999 77777 665555422 2 22
Q ss_pred h---HHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHcCCccc
Q 025344 102 A---FKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAK 147 (254)
Q Consensus 102 ~---~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~G~~v~ 147 (254)
. +.+-++.+++.||+.|-++ -|.=.-+.++..+-++.+.+.|..-+
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i 192 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHV 192 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 3 4455667788999855433 56556677888888899888876544
No 486
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=61.22 E-value=1e+02 Score=26.28 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.+-++.+.++|-+.| ++-++. ..+++.+++.|..+.+ |+. |
T Consensus 66 ~~~~~~a~~~Ga~~i-~~p~~~-------~~~~~~~~~~~~~~i~--gv~-----------------------------t 106 (190)
T cd00452 66 PEQADAAIAAGAQFI-VSPGLD-------PEVVKAANRAGIPLLP--GVA-----------------------------T 106 (190)
T ss_pred HHHHHHHHHcCCCEE-EcCCCC-------HHHHHHHHHcCCcEEC--CcC-----------------------------C
Confidence 455677888999998 344432 3677778887666554 331 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe
Q 025344 184 VDLLIRRAERCLEAGADMIMID 205 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiE 205 (254)
.+++.+.+++|||+|.+-
T Consensus 107 ----~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 ----PTEIMQALELGADIVKLF 124 (190)
T ss_pred ----HHHHHHHHHCCCCEEEEc
Confidence 456677789999999873
No 487
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=60.98 E-value=21 Score=33.64 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=61.9
Q ss_pred ccCChhHHHHHHHHHHhCCc-eecC-Cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe-------------cCCcccCC
Q 025344 65 SLMPKPFIEEVVKRAHQHDV-YVST-GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-------------NVGSLEIP 128 (254)
Q Consensus 65 ~l~~~~~l~eKi~l~~~~gV-~v~~-Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEI-------------SdGti~i~ 128 (254)
..++.+.+.+.++.+++.|+ .++. || ..+. ..+.+.+.++.+|+.+. .+++ |.|..+
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~----~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~-- 140 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDL----DGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSV-- 140 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCH--
Confidence 35677889999999999997 3333 44 3221 22366778888887642 2222 233322
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCC
Q 025344 129 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 199 (254)
Q Consensus 129 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA 199 (254)
.+.+++.++.|+.-.++.+.. +. .+.. -+.+.|.+ .+.+++++.++..-++|-
T Consensus 141 ----~e~l~~LkeAGl~~i~~~~~E-----~~--~~~v-~~~i~~~~------~~~~~~~~~i~~a~~~Gi 193 (343)
T TIGR03551 141 ----EEALKRLKEAGLDSMPGTAAE-----IL--DDEV-RKVICPDK------LSTAEWIEIIKTAHKLGI 193 (343)
T ss_pred ----HHHHHHHHHhCcccccCcchh-----hc--CHHH-HHhcCCCC------CCHHHHHHHHHHHHHcCC
Confidence 366778888999866643331 11 0000 01122211 146677777777777775
No 488
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.96 E-value=1.4e+02 Score=27.65 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=37.9
Q ss_pred cccEEeecCcccc-------cCChhHHHHHHHHHHhC-Ccee----cCCcHHHHHHHhCCchHHHHHHHHHHc--CCCEE
Q 025344 53 FVDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYV----STGDWAEHLIRNGPSAFKEYVEDCKQV--GFDTI 118 (254)
Q Consensus 53 yID~lKfg~GT~~-------l~~~~~l~eKi~l~~~~-gV~v----~~Gtl~E~a~~qg~~~~~~yl~~~k~l--GF~~I 118 (254)
+.|++=+-.+|-. ...++.+.+.++-.++. .+++ .|+. . ...+.+..+.+.+. |.+.|
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~--~------~~~~~~~a~~l~~~~~G~~gi 190 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT--D------PAQFDTLAEALNAFACPISFI 190 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--C------HHHHHHHHHHHhccccCCcEE
Confidence 5677777666532 23456777777777765 4433 3432 1 11355666666677 78888
Q ss_pred EecCCc
Q 025344 119 ELNVGS 124 (254)
Q Consensus 119 EISdGt 124 (254)
-+.|-+
T Consensus 191 ~~~Nt~ 196 (294)
T cd04741 191 TATNTL 196 (294)
T ss_pred EEEccC
Confidence 876554
No 489
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=60.76 E-value=48 Score=31.09 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhCCceec--CCcH--------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 025344 70 PFIEEVVKRAHQHDVYVS--TGDW--------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 125 (254)
Q Consensus 70 ~~l~eKi~l~~~~gV~v~--~Gtl--------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 125 (254)
+..++-+++||.+||.|- .|.. .+..+.- ..++-.+.+++.|.|++-||-||.
T Consensus 115 ~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T---~pe~a~~Fv~~TgvD~LAvaiGt~ 177 (283)
T PRK07998 115 AFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKT---EPEKVKDFVERTGCDMLAVSIGNV 177 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccC---CHHHHHHHHHHhCcCeeehhcccc
Confidence 356889999999999772 2311 1111122 356667777888999999999995
No 490
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=60.62 E-value=1.6e+02 Score=28.16 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhH--HH---HHHHHHHhC-CceecC-C-cHHHHHHHhCCchH
Q 025344 32 PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPF--IE---EVVKRAHQH-DVYVST-G-DWAEHLIRNGPSAF 103 (254)
Q Consensus 32 kG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~--l~---eKi~l~~~~-gV~v~~-G-tl~E~a~~qg~~~~ 103 (254)
+++ ++..+...++..+..-.-+-++.+.-.++|+.. .+ +.|+-.++. +++|.- + + .+ .-
T Consensus 133 ~~~----~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g-------~g--~s 199 (352)
T PRK05437 133 YGY----GVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVG-------FG--IS 199 (352)
T ss_pred CCC----CHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCC-------CC--Cc
Q ss_pred HHHHHHHHHcCCCEEEecC--CcccCChhHHHH------------------HHHHHHHc--CCcccceeeeecCCCCCCC
Q 025344 104 KEYVEDCKQVGFDTIELNV--GSLEIPEETLLR------------------YVRLVKSA--GLKAKPKFAVMFNKSDIPS 161 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~------------------lI~~~~~~--G~~v~~E~g~k~~~s~v~~ 161 (254)
.+..+.+.+.|.|+|.||. ||--.+-+.... .|..+++. .+.++.==|+ .+
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI---~~---- 272 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGI---RN---- 272 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCC---CC----
Q ss_pred ccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEE
Q 025344 162 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 204 (254)
Q Consensus 162 ~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~Vii 204 (254)
-..+.+.|.+||+.|.+
T Consensus 273 --------------------------~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 273 --------------------------GLDIAKALALGADAVGM 289 (352)
T ss_pred --------------------------HHHHHHHHHcCCCEEEE
No 491
>PRK06267 hypothetical protein; Provisional
Probab=60.60 E-value=98 Score=29.39 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=73.7
Q ss_pred cccEEeecCcccccCChhHHHHHHHHHHhCC---ceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc-c-
Q 025344 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS-L- 125 (254)
Q Consensus 53 yID~lKfg~GT~~l~~~~~l~eKi~l~~~~g---V~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~-~IEISdGt-i- 125 (254)
.++.+=+..|.. + +.+.|.+.++..++.. +.++.|- -.+.+-.. +.-|++ .+|.++-. .
T Consensus 79 Gv~~~~lsgG~~-~-~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~------------~l~Gv~g~~ET~~~~~~~ 144 (350)
T PRK06267 79 GWKLEFISGGYG-Y-TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLN------------EIEGVVGAVETVNPKLHR 144 (350)
T ss_pred CCCEEEEecCCC-C-CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhc------------cccCceeeeecCCHHHHH
Confidence 466443555554 3 4455888888886653 3445563 22222111 112222 36666431 1
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcE
Q 025344 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 201 (254)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ 201 (254)
..+.+++.+.++.+++.|+++.+-+=+ +..+ +.+++.+.++.--+.+++.
T Consensus 145 ~i~~~~s~ed~~~~l~~ak~aGi~v~~g~Ii--GlgE------------------------t~ed~~~~l~~l~~l~~d~ 198 (350)
T PRK06267 145 EICPGKPLDKIKEMLLKAKDLGLKTGITIIL--GLGE------------------------TEDDIEKLLNLIEELDLDR 198 (350)
T ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--eCCC------------------------CHHHHHHHHHHHHHcCCCE
Confidence 468899999999999999997653322 2111 2556677777777788887
Q ss_pred EEEec----cc-ccccCCCccHHHHHHHH
Q 025344 202 IMIDS----DD-VCKHADSLRADIIAKVI 225 (254)
Q Consensus 202 ViiEa----rg-i~d~~g~~r~d~i~~ii 225 (254)
|.+=. .| -+.+.-.+..+.+-+++
T Consensus 199 v~~~~L~P~pGTp~~~~~~~s~~e~lr~i 227 (350)
T PRK06267 199 ITFYSLNPQKGTIFENKPSVTTLEYMNWV 227 (350)
T ss_pred EEEEeeeECCCCcCCCCCCCCHHHHHHHH
Confidence 65432 12 12333345555555554
No 492
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=60.49 E-value=1.1e+02 Score=29.74 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCccccccC
Q 025344 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 183 (254)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~~~d 183 (254)
.+..+.+.+++++. +..+.-.++|+.+++.+ +.+|-.. +
T Consensus 102 a~aa~~~~e~~~~~---------~~p~l~~~ii~~vr~a~------VtvkiRl---------------~----------- 140 (369)
T TIGR01304 102 AAATRLLQELHAAP---------LKPELLGERIAEVRDSG------VITAVRV---------------S----------- 140 (369)
T ss_pred HHHHHHHHHcCCCc---------cChHHHHHHHHHHHhcc------eEEEEec---------------C-----------
Confidence 46677778888887 46677778899999986 3343211 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEecccc---c-ccCCCccHHHHHHHHhccCC
Q 025344 184 VDLLIRRAERCLEAGADMIMIDSDDV---C-KHADSLRADIIAKVIGRLGL 230 (254)
Q Consensus 184 ~~~~i~~~~~dLeAGA~~ViiEargi---~-d~~g~~r~d~i~~ii~~l~~ 230 (254)
+....+.++..++|||+.|.+-+|=. | ...++ ...+.++++.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~--p~~l~~~i~~~~I 189 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGE--PLNLKEFIGELDV 189 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCC--HHHHHHHHHHCCC
Confidence 22347788888999999999998721 2 22343 5667778887765
No 493
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=60.29 E-value=1.2e+02 Score=27.52 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeecCcccccCChhHHHHHHHHHHhC----------C--ceecCCcHHHH
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------D--VYVSTGDWAEH 94 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yID~lKfg~GT~~l~~~~~l~eKi~l~~~~----------g--V~v~~Gtl~E~ 94 (254)
..-.|=|. + .....+.+|+...+ |+-.||.++.+++.+++-.+.+-+. | ..+.+.||-|
T Consensus 76 ~v~vgGGI--r-s~e~~~~~l~~Ga~-----~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~- 146 (243)
T TIGR01919 76 VEELSGGR--R-DDSSLRAALTGGRA-----RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSD- 146 (243)
T ss_pred CEEEcCCC--C-CHHHHHHHHHcCCC-----EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeec-
Confidence 33445554 3 45666668886555 4577999999999888776655211 1 1333456755
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHH
Q 025344 95 LIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLR 134 (254)
Q Consensus 95 a~~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~ 134 (254)
+.- ...++++++.++|+..|=+ .|||..=++-+..+
T Consensus 147 --~~~--~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~ 186 (243)
T TIGR01919 147 --GGG--DLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLE 186 (243)
T ss_pred --CCC--cHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHH
Confidence 333 7899999999999988876 46887777655433
No 494
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=60.24 E-value=50 Score=33.10 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=74.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc-cEEeecCcccc-cCChhHHHHHHHHHHhCCc-eecCC--cHHHHHHH-hC-
Q 025344 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV-DGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIR-NG- 99 (254)
Q Consensus 27 T~V~DkG~~~~~g~~~~~DlLe~ag~yI-D~lKfg~GT~~-l~~~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~-qg- 99 (254)
|..++=|-+.+-+...++++++..-..+ +.-...-=|.- .-|..+-.++++.++++|| .++-| ++=+..+. -|
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 4555555332225788999999886654 32111111111 2455567899999999999 66656 55433332 12
Q ss_pred ---CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHcCCc
Q 025344 100 ---PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (254)
Q Consensus 100 ---~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~G~~ 145 (254)
.+.+.+-++.+++.||+.| -+--|.-.-+.++..+-++.+.+.+..
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 2235666778899999754 455666666778888888888887654
No 495
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.19 E-value=4.3 Score=33.62 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccEEeecCcccccCC--hhHHHHHHHHHHhCCceecCC---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 025344 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (254)
Q Consensus 54 ID~lKfg~GT~~l~~--~~~l~eKi~l~~~~gV~v~~G---t-l~E~a---------~~qg~~~~~~yl~~~k~lGF~~I 118 (254)
.|++-+......... ...+++-.++++++||.+..- + +...- -.+..+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 344444443333332 245889999999999984431 1 11100 00001268999999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHcCCcccceeee
Q 025344 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKFAV 152 (254)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~G~~v~~E~g~ 152 (254)
=+.-| .-..+.+ ...++.+.+++.|+++.-|-.-
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 99987 2222222 3345667778888887777554
No 496
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=59.90 E-value=1.2e+02 Score=27.06 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH-HHHcCCcccceeeeecCCCCCCCccccccccccccCCCcccc
Q 025344 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL-VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 180 (254)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~-~~~~G~~v~~E~g~k~~~s~v~~~~d~~~~~~~~~~~~~~~~ 180 (254)
.+.++.++++++||.+|=|+--++ .+.+. ++..+.++-+=+| ||. |
T Consensus 19 ~i~~lc~~A~~~~~~avcv~p~~v--------~~a~~~l~~~~v~v~tVig--FP~-----------------------G 65 (211)
T TIGR00126 19 DIITLCAQAKTYKFAAVCVNPSYV--------PLAKELLKGTEVRICTVVG--FPL-----------------------G 65 (211)
T ss_pred HHHHHHHHHHhhCCcEEEeCHHHH--------HHHHHHcCCCCCeEEEEeC--CCC-----------------------C
Confidence 689999999999999987753222 22221 2233444444332 232 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEecc-cccccCCCc--cHHHHHHHHhcc-C-CCceEEecCC
Q 025344 181 VEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSL--RADIIAKVIGRL-G-LEKTMFEATN 239 (254)
Q Consensus 181 ~~d~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~--r~d~i~~ii~~l-~-~~klifEAP~ 239 (254)
..+++--+.+++..+++||+-|-+=-. |-+. .|++ -.+++.++.+.. + +=|+|+|.+.
T Consensus 66 ~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~-~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~ 128 (211)
T TIGR00126 66 ASTTDVKLYETKEAIKYGADEVDMVINIGALK-DGNEEVVYDDIRAVVEACAGVLLKVIIETGL 128 (211)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeecchHhhh-CCcHHHHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 223667788999999999998765443 3221 2332 244666677544 3 5688999984
No 497
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.83 E-value=18 Score=33.99 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCcEEEEecccccccCCCccHHHHHHHHhccC--CCceEEecC
Q 025344 188 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG--LEKTMFEAT 238 (254)
Q Consensus 188 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~i~~ii~~l~--~~klifEAP 238 (254)
.+++.+.+++|||+|+++ ++..+.+.+++..+. ..++.+||.
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAs 249 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEAS 249 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 677788889999999997 667787887776553 456778876
No 498
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.64 E-value=68 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 025344 183 DVDLLIRRAERCLEAGADMIMIDSD 207 (254)
Q Consensus 183 d~~~~i~~~~~dLeAGA~~ViiEar 207 (254)
|+++.++.++.--++|+++|-|=++
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 5788888888888999999887443
No 499
>PRK09248 putative hydrolase; Validated
Probab=59.53 E-value=20 Score=31.90 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCCCEE
Q 025344 103 FKEYVEDCKQVGFDTI 118 (254)
Q Consensus 103 ~~~yl~~~k~lGF~~I 118 (254)
+++-++.+++.||+.+
T Consensus 203 ~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 203 FEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4444455555555544
No 500
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=59.34 E-value=29 Score=31.39 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=55.2
Q ss_pred HHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeec
Q 025344 76 VKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (254)
Q Consensus 76 i~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G~~v~~E~g~k~ 154 (254)
....++++| .|--+-=.|.++ ...+.+-+=||++||| ++......+.|+.+++ |+.
T Consensus 7 ~~~l~~~~vI~Vlr~~~~e~a~--------~~a~Ali~gGi~~IEI-----Tl~sp~a~e~I~~l~~-------~~p--- 63 (211)
T COG0800 7 LSKLKAQPVVPVIRGDDVEEAL--------PLAKALIEGGIPAIEI-----TLRTPAALEAIRALAK-------EFP--- 63 (211)
T ss_pred HHHHHHCCeeEEEEeCCHHHHH--------HHHHHHHHcCCCeEEE-----ecCCCCHHHHHHHHHH-------hCc---
Confidence 445556666 333343333333 2345566789999997 6777888999999999 454
Q ss_pred CCCCCCCccccccccccccCCCccccccCHHHHHHHHHHHHHcCCcEEEEec
Q 025344 155 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 206 (254)
Q Consensus 155 ~~s~v~~~~d~~~~~~~~~~~~~~~~~~d~~~~i~~~~~dLeAGA~~ViiEa 206 (254)
..-+|+ |-.++ -++++...+|||.+|+-=+
T Consensus 64 -~~lIGA------GTVL~---------------~~q~~~a~~aGa~fiVsP~ 93 (211)
T COG0800 64 -EALIGA------GTVLN---------------PEQARQAIAAGAQFIVSPG 93 (211)
T ss_pred -ccEEcc------ccccC---------------HHHHHHHHHcCCCEEECCC
Confidence 123442 12243 5778888999999998543
Done!