Query 025345
Match_columns 254
No_of_seqs 140 out of 209
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 8E-105 2E-109 714.2 7.3 187 65-254 4-190 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 3E-101 7E-106 665.3 9.7 199 32-233 2-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.3 0.00011 2.3E-09 64.5 2.2 56 102-159 4-60 (179)
4 TIGR00488 putative HD superfam 94.0 0.014 3E-07 48.3 -0.2 38 121-158 6-47 (158)
5 PF01966 HD: HD domain; Inter 91.8 0.019 4E-07 42.2 -2.2 35 125-159 2-42 (122)
6 COG4341 Predicted HD phosphohy 91.7 0.11 2.4E-06 46.4 2.1 49 113-164 20-68 (186)
7 smart00471 HDc Metal dependent 91.4 0.033 7.2E-07 39.9 -1.2 39 122-160 3-46 (124)
8 TIGR01596 cas3_HD CRISPR-assoc 89.8 0.061 1.3E-06 43.5 -1.1 34 125-158 2-47 (177)
9 TIGR00277 HDIG uncharacterized 88.3 0.14 3.1E-06 35.6 0.0 34 125-158 6-43 (80)
10 cd00077 HDc Metal dependent ph 84.8 0.16 3.5E-06 36.8 -1.3 35 124-158 3-44 (145)
11 PRK00106 hypothetical protein; 84.3 0.51 1.1E-05 47.7 1.5 54 103-158 332-389 (535)
12 PF08668 HDOD: HDOD domain; I 83.8 0.82 1.8E-05 38.0 2.3 69 92-160 47-136 (196)
13 TIGR03319 YmdA_YtgF conserved 83.3 0.66 1.4E-05 46.3 1.8 54 103-158 311-368 (514)
14 COG2316 Predicted hydrolase (H 79.5 1.3 2.8E-05 40.1 2.1 55 98-158 28-86 (212)
15 PRK12703 tRNA 2'-O-methylase; 75.2 1.9 4.1E-05 41.5 2.1 60 93-158 163-226 (339)
16 PRK07152 nadD putative nicotin 74.3 0.95 2.1E-05 42.1 -0.2 36 123-158 196-235 (342)
17 TIGR00295 conserved hypothetic 71.6 1.5 3.3E-05 36.9 0.5 35 124-158 14-57 (164)
18 PRK12705 hypothetical protein; 66.1 3.2 7E-05 41.9 1.5 35 124-158 324-362 (508)
19 TIGR02621 cas3_GSU0051 CRISPR- 64.6 2.7 5.8E-05 44.9 0.7 37 122-158 674-716 (844)
20 PRK01759 glnD PII uridylyl-tra 55.8 12 0.00026 39.6 3.5 35 122-156 435-487 (854)
21 PF15608 PELOTA_1: PELOTA RNA 55.1 35 0.00075 28.0 5.4 55 76-134 16-78 (100)
22 PRK12704 phosphodiesterase; Pr 54.3 7.2 0.00016 39.2 1.7 53 104-158 318-374 (520)
23 PRK10885 cca multifunctional t 54.2 3.5 7.6E-05 39.9 -0.5 35 123-158 227-261 (409)
24 PRK03381 PII uridylyl-transfer 52.3 4.7 0.0001 42.1 -0.0 35 123-157 420-457 (774)
25 PRK05007 PII uridylyl-transfer 52.2 12 0.00026 39.8 2.9 34 123-156 461-512 (884)
26 TIGR03760 ICE_TraI_Pfluor inte 51.7 4.7 0.0001 36.2 -0.1 15 145-159 108-122 (218)
27 PF06784 UPF0240: Uncharacteri 50.9 14 0.00029 32.6 2.6 34 95-139 113-146 (179)
28 PTZ00100 DnaJ chaperone protei 50.7 49 0.0011 27.6 5.7 52 83-141 41-96 (116)
29 PRK13480 3'-5' exoribonuclease 50.7 3.6 7.8E-05 38.9 -1.0 33 128-160 167-201 (314)
30 COG2206 c-di-GMP phosphodieste 50.6 6.4 0.00014 36.9 0.6 43 113-159 142-191 (344)
31 PRK05092 PII uridylyl-transfer 45.2 6.6 0.00014 41.6 -0.2 31 126-156 496-544 (931)
32 PRK08071 L-aspartate oxidase; 44.8 41 0.0009 33.0 5.2 73 85-158 415-508 (510)
33 PRK00275 glnD PII uridylyl-tra 42.8 7.5 0.00016 41.3 -0.2 36 122-157 459-512 (895)
34 COG1418 Predicted HD superfami 42.3 14 0.0003 33.1 1.4 41 117-160 33-77 (222)
35 PRK14068 exodeoxyribonuclease 42.1 38 0.00083 26.2 3.6 41 97-137 3-44 (76)
36 PF02910 Succ_DH_flav_C: Fumar 42.0 24 0.00051 28.6 2.6 66 86-151 5-101 (129)
37 PRK04374 PII uridylyl-transfer 40.1 12 0.00025 39.9 0.6 35 123-157 449-501 (869)
38 PRK14064 exodeoxyribonuclease 40.0 44 0.00095 25.7 3.6 42 97-138 3-45 (75)
39 PRK00227 glnD PII uridylyl-tra 39.3 9.9 0.00021 39.7 -0.0 36 123-158 380-418 (693)
40 COG3481 Predicted HD-superfami 38.3 16 0.00035 34.7 1.2 50 126-177 147-199 (287)
41 COG0647 NagD Predicted sugar p 36.6 2.3E+02 0.0049 26.6 8.3 112 81-215 32-171 (269)
42 PF13328 HD_4: HD domain; PDB: 36.5 14 0.00031 30.2 0.5 36 118-154 14-49 (153)
43 PRK03059 PII uridylyl-transfer 36.1 13 0.00029 39.3 0.3 34 123-156 440-491 (856)
44 PF05964 FYRN: F/Y-rich N-term 34.0 18 0.0004 25.7 0.7 26 150-180 5-30 (54)
45 COG1023 Gnd Predicted 6-phosph 33.8 50 0.0011 31.8 3.7 61 99-172 179-251 (300)
46 TIGR02578 cas_TM1811_Csm1 CRIS 33.2 12 0.00026 38.7 -0.6 14 146-159 2-15 (648)
47 PF03656 Pam16: Pam16; InterP 33.1 41 0.00088 28.4 2.7 30 98-132 53-86 (127)
48 TIGR03401 cyanamide_fam HD dom 32.6 16 0.00035 32.9 0.3 39 120-158 55-98 (228)
49 TIGR01693 UTase_glnD [Protein- 31.8 13 0.00027 39.0 -0.6 33 125-157 430-480 (850)
50 cd07353 harmonin_N N-terminal 31.2 27 0.00059 27.7 1.3 14 226-239 22-35 (79)
51 PF12477 TraW_N: Sex factor F 30.6 18 0.00038 24.0 0.1 11 169-179 21-31 (31)
52 PRK14067 exodeoxyribonuclease 29.9 73 0.0016 24.9 3.4 41 97-137 4-45 (80)
53 PF11884 DUF3404: Domain of un 28.6 28 0.0006 32.9 1.1 79 65-158 12-117 (262)
54 COG0502 BioB Biotin synthase a 28.0 1.1E+02 0.0024 29.7 5.1 44 98-152 12-55 (335)
55 PRK07094 biotin synthase; Prov 28.0 1.2E+02 0.0026 27.5 5.0 32 100-139 1-32 (323)
56 PF07801 DUF1647: Protein of u 27.6 69 0.0015 27.6 3.2 56 95-155 29-98 (142)
57 KOG3442 Uncharacterized conser 27.6 2.3E+02 0.0051 24.6 6.3 59 68-132 19-87 (132)
58 PRK00977 exodeoxyribonuclease 27.6 97 0.0021 24.0 3.7 42 96-137 6-48 (80)
59 TIGR02692 tRNA_CCA_actino tRNA 27.4 29 0.00062 33.9 1.0 38 122-159 257-296 (466)
60 KOG4481 Uncharacterized conser 27.1 57 0.0012 29.7 2.7 34 95-139 112-145 (194)
61 PF14475 Mso1_Sec1_bdg: Sec1-b 25.4 1.2E+02 0.0026 21.4 3.5 33 113-145 9-41 (41)
62 PF07514 TraI_2: Putative heli 24.7 18 0.00039 34.3 -0.9 18 142-159 101-121 (327)
63 PF10809 DUF2732: Protein of u 24.4 2.4E+02 0.0052 22.2 5.4 61 51-111 4-64 (77)
64 TIGR00691 spoT_relA (p)ppGpp s 24.4 44 0.00096 34.7 1.7 34 120-154 16-49 (683)
65 PF13446 RPT: A repeated domai 24.2 1.2E+02 0.0026 21.5 3.5 29 99-132 1-29 (62)
66 smart00735 ZM ZASP-like motif. 24.0 43 0.00093 20.9 1.0 15 201-215 5-19 (26)
67 TIGR01280 xseB exodeoxyribonuc 23.5 1.2E+02 0.0025 22.8 3.4 36 100-135 1-37 (67)
68 PRK11092 bifunctional (p)ppGpp 22.8 82 0.0018 33.1 3.3 53 102-155 23-75 (702)
69 PRK10119 putative hydrolase; P 22.3 67 0.0015 29.3 2.3 44 113-156 18-62 (231)
70 COG3437 Response regulator con 22.0 1.2E+02 0.0026 30.0 4.1 56 99-158 165-227 (360)
71 PRK14069 exodeoxyribonuclease 21.7 1.2E+02 0.0026 24.7 3.4 41 98-138 6-47 (95)
72 COG0132 BioD Dethiobiotin synt 21.6 95 0.0021 28.3 3.1 27 120-151 145-171 (223)
73 COG1099 Predicted metal-depend 21.4 93 0.002 29.5 3.0 60 79-139 167-233 (254)
74 PRK06263 sdhA succinate dehydr 20.6 66 0.0014 31.7 2.0 72 85-158 442-538 (543)
75 COG1639 Predicted signal trans 20.6 54 0.0012 31.3 1.4 134 85-238 62-217 (289)
76 PRK13298 tRNA CCA-pyrophosphor 20.5 64 0.0014 32.0 1.9 36 123-159 228-263 (417)
77 TIGR01346 isocit_lyase isocitr 20.5 97 0.0021 32.0 3.2 24 119-142 386-409 (527)
78 cd01282 HTH_MerR-like_sg3 Heli 20.4 4.4E+02 0.0094 20.8 6.4 18 42-61 23-40 (112)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=7.7e-105 Score=714.21 Aligned_cols=187 Identities=65% Similarity=1.081 Sum_probs=148.7
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCc
Q 025345 65 RQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDW 144 (254)
Q Consensus 65 r~~~V~~fYr~~H~~QTvdfv~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW 144 (254)
|++||++|||+||++||||||++||++|++|+|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus 4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW 83 (253)
T PF05153_consen 4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW 83 (253)
T ss_dssp -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccceeeccCCCCCCCceeecCeeeeecccCCCcccccccccCCCCCCCCCCCCCccccCCCCccccccccC
Q 025345 145 LHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWG 224 (254)
Q Consensus 145 ~qLtGLIHDLGKvl~l~~fg~epQWaVvGDTfpVGC~f~~siV~~e~F~~NPD~~~p~YnTk~GiY~~~CGLdNV~mSWG 224 (254)
||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+||||||||+||||||||+||||
T Consensus 84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg 161 (253)
T PF05153_consen 84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG 161 (253)
T ss_dssp HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence 9999999999999999 98999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhcCCCCccccchhccccCC
Q 025345 225 HDDYMYLVCLLCFESNHNCAGAYSSRSTKI 254 (254)
Q Consensus 225 HDEYlY~Vlk~~~~~~~~~~g~~~~r~~~~ 254 (254)
||||||+|||++ +++||+|||||||+-|.
T Consensus 162 HDEYlY~Vlk~n-~~tLP~eaL~mIRyhSf 190 (253)
T PF05153_consen 162 HDEYLYQVLKHN-KSTLPEEALYMIRYHSF 190 (253)
T ss_dssp HHHHHHHHHHHC-T----HHHHHHHHHTT-
T ss_pred chHHHHHHHHcc-cCccCHHHHHHHHHhcc
Confidence 999999999998 99999999999998763
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=3.2e-101 Score=665.31 Aligned_cols=199 Identities=74% Similarity=1.267 Sum_probs=190.2
Q ss_pred CccccCCCC--CCCcCCCCcccCccccCCccc-hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCcccCHHHHHHH
Q 025345 32 GFVVPKTMP--NDGFVAPEINSFGKTFRDYNA-ECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCEL 108 (254)
Q Consensus 32 ~~~~~k~~~--~~~f~~p~~~~~~~~FR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~r~~~~~~~~~~MsIwEA~e~ 108 (254)
+++++|.++ .+.|.+|+.++++.+||+|++ +++|++||+.|||.||+||||||||+||++|+||++.+||||||||+
T Consensus 2 ~~~~~~d~s~v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~el 81 (204)
T KOG1573|consen 2 RTIMSKDSSVVDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCEL 81 (204)
T ss_pred CcccCCCCccccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHH
Confidence 456777755 567999999999999999954 68999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecccceeeccCCCCCCCceeecCeeeeecccCCCccc
Q 025345 109 LNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVH 188 (254)
Q Consensus 109 Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~l~~fg~epQWaVvGDTfpVGC~f~~siV~ 188 (254)
||++|||||||+|+|||+|||||||+||++||++||||||||||||||||. ||++||||||||||||||+|++||||
T Consensus 82 l~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~ 158 (204)
T KOG1573|consen 82 LNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVH 158 (204)
T ss_pred HHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCccccccccccccee
Confidence 999999999999999999999999999999999999999999999999995 58899999999999999999999999
Q ss_pred c-cccccCCCCCCCCCCCCCccccCCCCccccccccCcchhHHHHH
Q 025345 189 H-KYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVC 233 (254)
Q Consensus 189 ~-e~F~~NPD~~~p~YnTk~GiY~~~CGLdNV~mSWGHDEYlY~Vl 233 (254)
. ++|..|||.+||+|||+.|||+|+||||||+||||||||||+|+
T Consensus 159 ~d~~F~~NpD~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 159 HDKYFDGNPDINNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred chhhccCCCCCCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 6 99999999999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.34 E-value=0.00011 Score=64.49 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=41.5
Q ss_pred HHHHHHHhhhccCCCCCC-CChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecccceee
Q 025345 102 IWECCELLNEVVDESDPD-LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLT 159 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD-~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~ 159 (254)
|-+-..++...... +-+ -.+||++|+||||...++++-++++ .+.+|+||+|.++.
T Consensus 4 ~~~i~~l~~~~g~~-~y~Ge~Vs~leH~LQ~A~lA~~~Gad~el-vvAALLHDIGhll~ 60 (179)
T TIGR03276 4 LDEIFALFDEHGAR-QYGGEAVSQLEHALQCAQLAEAAGADDEL-IVAAFLHDIGHLLA 60 (179)
T ss_pred HHHHHHHHHhcCcc-ccCCCCCcHHHHHHHHHHHHHHcCCCHHH-HHHHHHHhcchhhh
Confidence 44444555554444 333 4588999999999999999855554 99999999999874
No 4
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=94.00 E-value=0.014 Score=48.29 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 121 DEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 121 dlpqi~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
+..-..|.+.+|...| +-++++++..++||+||+||.+
T Consensus 6 ~~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 6 DEHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3456789998887644 3356789999999999999954
No 5
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=91.82 E-value=0.019 Score=42.22 Aligned_cols=35 Identities=37% Similarity=0.630 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH---hcC---CCCCcceeeeeeecccceee
Q 025345 125 IQHLLQSAEAIR---KDY---PDEDWLHLTALIHDLGKVLT 159 (254)
Q Consensus 125 i~HllQTAEaIR---~d~---P~pdW~qLtGLIHDLGKvl~ 159 (254)
++|.+.+|+..+ +.. .+.+++.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 467776665544 222 25678999999999999873
No 6
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=91.70 E-value=0.11 Score=46.37 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=37.0
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecccceeeccCCC
Q 025345 113 VDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFG 164 (254)
Q Consensus 113 VDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~l~~fg 164 (254)
-|++=----++|++|+||+|-..-+||-+.+| .-..|+||+|.+.. .+|
T Consensus 20 g~e~y~ge~VTq~eHaLQ~AtlAerdGa~~~l-VaaALLHDiGhl~~--~~g 68 (186)
T COG4341 20 GDEGYSGEPVTQLEHALQCATLAERDGADTAL-VAAALLHDIGHLYA--DYG 68 (186)
T ss_pred cccccccCcchhhhhHHHHhHHHHhcCCcHHH-HHHHHHHhHHHHhh--hcC
Confidence 34543334478999999999999999954455 56889999999984 355
No 7
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=91.37 E-value=0.033 Score=39.94 Aligned_cols=39 Identities=33% Similarity=0.312 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHhcC---C--CCCcceeeeeeecccceeec
Q 025345 122 EPQIQHLLQSAEAIRKDY---P--DEDWLHLTALIHDLGKVLTL 160 (254)
Q Consensus 122 lpqi~HllQTAEaIR~d~---P--~pdW~qLtGLIHDLGKvl~l 160 (254)
.+.++|.+++|..++.-. + +.+.+-++||+||+||....
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~ 46 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTP 46 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCC
Confidence 356778888777665322 1 34678899999999998853
No 8
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=89.83 E-value=0.061 Score=43.48 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHh----------cC--CCCCcceeeeeeeccccee
Q 025345 125 IQHLLQSAEAIRK----------DY--PDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 125 i~HllQTAEaIR~----------d~--P~pdW~qLtGLIHDLGKvl 158 (254)
.+|++.||+..+. .. +..+++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 11 1368999999999999976
No 9
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=88.30 E-value=0.14 Score=35.58 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 125 IQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 125 i~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
..|.+.+|...+ +-+.+++.+-++||+||+||+.
T Consensus 6 ~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~~ 43 (80)
T TIGR00277 6 LQHSLEVAKLAEALARELGLDVELARRGALLHDIGKPI 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCcc
Confidence 345444444333 2234556788999999999986
No 10
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=84.84 E-value=0.16 Score=36.79 Aligned_cols=35 Identities=37% Similarity=0.594 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHH---hcC----CCCCcceeeeeeeccccee
Q 025345 124 QIQHLLQSAEAIR---KDY----PDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 124 qi~HllQTAEaIR---~d~----P~pdW~qLtGLIHDLGKvl 158 (254)
...|.++++..+. +.. ++++.+-+.||+||+||..
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 3 RFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 4566665554443 221 2357788999999999976
No 11
>PRK00106 hypothetical protein; Provisional
Probab=84.28 E-value=0.51 Score=47.72 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 103 wEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
.|++.+|-.|-.-.+-+-. ...|.+.+|...+ .-+.++++.-++||+||+||++
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v 389 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAI 389 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCcc
Confidence 4777888777544333222 6799999888653 4456789999999999999985
No 12
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=83.80 E-value=0.82 Score=37.96 Aligned_cols=69 Identities=28% Similarity=0.294 Sum_probs=44.2
Q ss_pred HccCCCcccCHHHHHHHhh-----hc---------cCCCC-CCCCh-hhHHHHHHHHHHHHh----cCC-CCCcceeeee
Q 025345 92 YAKLDKAEMSIWECCELLN-----EV---------VDESD-PDLDE-PQIQHLLQSAEAIRK----DYP-DEDWLHLTAL 150 (254)
Q Consensus 92 ~~~~~~~~MsIwEA~e~Ln-----~l---------VDeSD-PD~dl-pqi~HllQTAEaIR~----d~P-~pdW~qLtGL 150 (254)
+.++.+.--||.+|+-.|= ++ ...+. ....+ .-..|.+.+|..+++ ... +++-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4446666679999987653 11 22222 22333 345899999888752 222 3488899999
Q ss_pred eecccceeec
Q 025345 151 IHDLGKVLTL 160 (254)
Q Consensus 151 IHDLGKvl~l 160 (254)
+||+|+++++
T Consensus 127 L~~iG~l~l~ 136 (196)
T PF08668_consen 127 LHDIGKLLLL 136 (196)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 9999999976
No 13
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.31 E-value=0.66 Score=46.29 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=36.5
Q ss_pred HHHHHHhhhccCCCCCCCChhhHHHHHHHHHHH----HhcCCCCCcceeeeeeeccccee
Q 025345 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAI----RKDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 103 wEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaI----R~d~P~pdW~qLtGLIHDLGKvl 158 (254)
.+++.+|..|---+...-+ ...|.+.+|... +.-+.+++...++||+||+||++
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~ 368 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAV 368 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCccc
Confidence 4667777765433221111 468988887663 34456788889999999999986
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=79.52 E-value=1.3 Score=40.14 Aligned_cols=55 Identities=33% Similarity=0.322 Sum_probs=40.8
Q ss_pred cccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh----cCCCCCcceeeeeeeccccee
Q 025345 98 AEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 98 ~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~----d~P~pdW~qLtGLIHDLGKvl 158 (254)
+.||-+||+++|.+.|- +.+.+.|+|.++..+|. =+-|+.=.-++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~------~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVP------SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 45788999999999874 34589999999998873 232333336899999986444
No 15
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=75.20 E-value=1.9 Score=41.47 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=40.3
Q ss_pred ccCCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHH---hc-CCCCCcceeeeeeeccccee
Q 025345 93 AKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR---KD-YPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 93 ~~~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR---~d-~P~pdW~qLtGLIHDLGKvl 158 (254)
+|.....++..||+++|...--+ -..+.|.++.|...+ +. ..+.+=+.++||+||+||..
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~------e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k 226 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGAS------DLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTK 226 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccc
Confidence 44445578999999999987221 125788887654432 22 23555566789999999975
No 16
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=74.30 E-value=0.95 Score=42.10 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 123 PQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 123 pqi~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
.-..|.+.+|...+ +-+.+++=..++||+||+||+.
T Consensus 196 ~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~ 235 (342)
T PRK07152 196 YRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEW 235 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccC
Confidence 35689888886554 2233456677899999999976
No 17
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=71.64 E-value=1.5 Score=36.94 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHH---hc-C-----CCCCcceeeeeeeccccee
Q 025345 124 QIQHLLQSAEAIR---KD-Y-----PDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 124 qi~HllQTAEaIR---~d-~-----P~pdW~qLtGLIHDLGKvl 158 (254)
-+.|.+..|...+ +. + .+++=+-+.||+||+||+.
T Consensus 14 ~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~ 57 (164)
T TIGR00295 14 VRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRAR 57 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCccc
Confidence 6788877665432 21 1 3556777899999999986
No 18
>PRK12705 hypothetical protein; Provisional
Probab=66.13 E-value=3.2 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 124 QIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 124 qi~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
.+.|.+.+|...+ +-+-+++....+||+||+||+.
T Consensus 324 vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~i 362 (508)
T PRK12705 324 VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSI 362 (508)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcc
Confidence 5799999888664 3344667777899999999975
No 19
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=64.56 E-value=2.7 Score=44.87 Aligned_cols=37 Identities=27% Similarity=0.218 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHhc---CCCCCc---ceeeeeeeccccee
Q 025345 122 EPQIQHLLQSAEAIRKD---YPDEDW---LHLTALIHDLGKVL 158 (254)
Q Consensus 122 lpqi~HllQTAEaIR~d---~P~pdW---~qLtGLIHDLGKvl 158 (254)
-+.-+|+..+|+..+.- ...++| ..++||.|||||.-
T Consensus 674 q~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 674 VALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EEHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 33459999998877743 235677 57999999999976
No 20
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=55.77 E-value=12 Score=39.63 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHh------------------cCCCCCcceeeeeeecccc
Q 025345 122 EPQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (254)
Q Consensus 122 lpqi~HllQTAEaIR~------------------d~P~pdW~qLtGLIHDLGK 156 (254)
.+.-+|.+.+=+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 3555788888776542 2246778899999999999
No 21
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=55.14 E-value=35 Score=28.00 Aligned_cols=55 Identities=27% Similarity=0.405 Sum_probs=43.8
Q ss_pred HhhhhhHHHHHHHHHHHcc--CCCcccCHHHHHHHhhh------ccCCCCCCCChhhHHHHHHHHHH
Q 025345 76 QHINQTYDFVKKMREEYAK--LDKAEMSIWECCELLNE------VVDESDPDLDEPQIQHLLQSAEA 134 (254)
Q Consensus 76 ~H~~QTvdfv~~~r~~~~~--~~~~~MsIwEA~e~Ln~------lVDeSDPD~dlpqi~HllQTAEa 134 (254)
..+.|+.++|.+..++|+- .|+.+-+|-||-..|-. ||++. +-|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3567899999999999974 66899999999998874 44432 22788999999985
No 22
>PRK12704 phosphodiesterase; Provisional
Probab=54.25 E-value=7.2 Score=39.16 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHhhhccCCCCCCCChhhHHHHHHHHHHHH----hcCCCCCcceeeeeeeccccee
Q 025345 104 ECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 104 EA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR----~d~P~pdW~qLtGLIHDLGKvl 158 (254)
+++.+|..+ .-.|+.+. ....|.+-+|-..+ .-+.+++-.-++||+||+||+.
T Consensus 318 ~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 318 ELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 556666665 33343332 24578877665443 2244667778999999999985
No 23
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=54.22 E-value=3.5 Score=39.93 Aligned_cols=35 Identities=31% Similarity=0.217 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcceeeeeeeccccee
Q 025345 123 PQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 123 pqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl 158 (254)
+..+|.+.+-+.+.+-- ....+-++.|+||+||-.
T Consensus 227 dv~~Htl~~l~~~~~l~-~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLS-PSLDVRFAALCHDLGKGL 261 (409)
T ss_pred cHHHHHHHHHHHHHhcC-CCHHHHHHHHhccccCCC
Confidence 45689888877776543 344678899999999966
No 24
>PRK03381 PII uridylyl-transferase; Provisional
Probab=52.31 E-value=4.7 Score=42.05 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHH---HhcCCCCCcceeeeeeecccce
Q 025345 123 PQIQHLLQSAEAI---RKDYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 123 pqi~HllQTAEaI---R~d~P~pdW~qLtGLIHDLGKv 157 (254)
+--+|.+.+-+.+ .+.-+.++.+-|++|+||+||-
T Consensus 420 tVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGKg 457 (774)
T PRK03381 420 TVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGKG 457 (774)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Confidence 4446877775444 3444467889999999999993
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=52.19 E-value=12 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHh------------------cCCCCCcceeeeeeecccc
Q 025345 123 PQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (254)
Q Consensus 123 pqi~HllQTAEaIR~------------------d~P~pdW~qLtGLIHDLGK 156 (254)
+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 461 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 461 TVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred cHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 444788888776642 1246789999999999999
No 26
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=51.71 E-value=4.7 Score=36.22 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.2
Q ss_pred ceeeeeeecccceee
Q 025345 145 LHLTALIHDLGKVLT 159 (254)
Q Consensus 145 ~qLtGLIHDLGKvl~ 159 (254)
+-.+||+|||||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 456789999999964
No 27
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=50.92 E-value=14 Score=32.58 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=28.0
Q ss_pred CCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcC
Q 025345 95 LDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (254)
Q Consensus 95 ~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~ 139 (254)
..++++||.||+++|+..- .||.++ |||.|-.+|
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~W---------taekIA~eY 146 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPETW---------TAEKIAQEY 146 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCcccc---------CHHHHHHHh
Confidence 5689999999999999753 456554 799999998
No 28
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=50.73 E-value=49 Score=27.61 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcc--CC--CcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCC
Q 025345 83 DFVKKMREEYAK--LD--KAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPD 141 (254)
Q Consensus 83 dfv~~~r~~~~~--~~--~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~ 141 (254)
.|+..+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPD 96 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPD 96 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCC
Confidence 457778887755 43 458999999999984 35566667765554 445556664
No 29
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=50.71 E-value=3.6 Score=38.91 Aligned_cols=33 Identities=42% Similarity=0.716 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCC--CCCcceeeeeeecccceeec
Q 025345 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160 (254)
Q Consensus 128 llQTAEaIR~d~P--~pdW~qLtGLIHDLGKvl~l 160 (254)
+++.|.+|-..|| +.|-+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 3444555545566 33556667789999999865
No 30
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=50.57 E-value=6.4 Score=36.85 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=28.1
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHhcC-----CCC--Ccceeeeeeecccceee
Q 025345 113 VDESDPDLDEPQIQHLLQSAEAIRKDY-----PDE--DWLHLTALIHDLGKVLT 159 (254)
Q Consensus 113 VDeSDPD~dlpqi~HllQTAEaIR~d~-----P~p--dW~qLtGLIHDLGKvl~ 159 (254)
++..|+-|. .|-..+|+-.+.-+ |+. .++-+.||+||+||+-.
T Consensus 142 ~~~kd~~t~----~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 142 IKAKDDYTY----GHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred ccccchhHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 565555543 67777776554322 212 45678999999999874
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=45.18 E-value=6.6 Score=41.61 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhc------------------CCCCCcceeeeeeecccc
Q 025345 126 QHLLQSAEAIRKD------------------YPDEDWLHLTALIHDLGK 156 (254)
Q Consensus 126 ~HllQTAEaIR~d------------------~P~pdW~qLtGLIHDLGK 156 (254)
+|.+++-+.+++- -++++.+-|++|+||+||
T Consensus 496 ~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 496 EHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 5888887766531 245678999999999999
No 32
>PRK08071 L-aspartate oxidase; Provisional
Probab=44.82 E-value=41 Score=32.99 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=48.1
Q ss_pred HHHHHHHHccCCCcccCHHHHHHHhhhcc-CCC--CCC---CChhhHHHHHHHHHHH---------------HhcCCCCC
Q 025345 85 VKKMREEYAKLDKAEMSIWECCELLNEVV-DES--DPD---LDEPQIQHLLQSAEAI---------------RKDYPDED 143 (254)
Q Consensus 85 v~~~r~~~~~~~~~~MsIwEA~e~Ln~lV-DeS--DPD---~dlpqi~HllQTAEaI---------------R~d~P~pd 143 (254)
.++...+|....|.+-.+.+|+..|+.|- .+. +.+ .+.-.+..++.+|+.| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 34455667777788888999999999884 111 111 1112446788888876 55688778
Q ss_pred cceeeeeeeccccee
Q 025345 144 WLHLTALIHDLGKVL 158 (254)
Q Consensus 144 W~qLtGLIHDLGKvl 158 (254)
|...+ ++-.-||+.
T Consensus 495 ~~~~~-~~~~~~~~~ 508 (510)
T PRK08071 495 WRGKE-IVRTKRKLQ 508 (510)
T ss_pred cCceE-EEecCCcee
Confidence 87666 666666664
No 33
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=42.80 E-value=7.5 Score=41.29 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHh------------------cCCCCCcceeeeeeecccce
Q 025345 122 EPQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 122 lpqi~HllQTAEaIR~------------------d~P~pdW~qLtGLIHDLGKv 157 (254)
.+.-+|.+.|-+.+++ .-.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 3445788888777753 11246789999999999993
No 34
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=42.26 E-value=14 Score=33.09 Aligned_cols=41 Identities=29% Similarity=0.299 Sum_probs=27.3
Q ss_pred CCCCChhhHHHHHHH---HHHHHhc-CCCCCcceeeeeeecccceeec
Q 025345 117 DPDLDEPQIQHLLQS---AEAIRKD-YPDEDWLHLTALIHDLGKVLTL 160 (254)
Q Consensus 117 DPD~dlpqi~HllQT---AEaIR~d-~P~pdW~qLtGLIHDLGKvl~l 160 (254)
.+..++ .|.+.+ |..|-+. +-|++=...+||+||+||..-.
T Consensus 33 ~~~~~l---~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 33 YGQHVL---EHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred ccchHH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 444444 555554 4555544 4467778899999999998843
No 35
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=42.15 E-value=38 Score=26.20 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.6
Q ss_pred CcccCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHHHh
Q 025345 97 KAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRK 137 (254)
Q Consensus 97 ~~~MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaIR~ 137 (254)
+.++|.-+|++.|.++|..- ++|++|.+...+++-+..+-+
T Consensus 3 ~~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 3 KETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999999776 799999999988888766554
No 36
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=41.99 E-value=24 Score=28.61 Aligned_cols=66 Identities=32% Similarity=0.523 Sum_probs=44.2
Q ss_pred HHHHHHHccCCCcccCHHHHHHHhhhccCCC------CCC-C------ChhhHHHHHHHHHHH---------------Hh
Q 025345 86 KKMREEYAKLDKAEMSIWECCELLNEVVDES------DPD-L------DEPQIQHLLQSAEAI---------------RK 137 (254)
Q Consensus 86 ~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeS------DPD-~------dlpqi~HllQTAEaI---------------R~ 137 (254)
++...+|.+.-|.+.++.+|++.|..|-.+- |.. . ..-.+.+++.+|++| |.
T Consensus 5 q~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~H~R~ 84 (129)
T PF02910_consen 5 QEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGAHYRE 84 (129)
T ss_dssp HHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTTBEBT
T ss_pred HHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCcccchhc
Confidence 3455678888888999999999999884332 111 1 122347899999987 55
Q ss_pred cCCC---CCcceeeeee
Q 025345 138 DYPD---EDWLHLTALI 151 (254)
Q Consensus 138 d~P~---pdW~qLtGLI 151 (254)
|||. +.|..-+-..
T Consensus 85 D~P~~~d~~~~~~~~~~ 101 (129)
T PF02910_consen 85 DYPERDDENWLKHIIVR 101 (129)
T ss_dssp TSSSCETTTCSEEEEEE
T ss_pred cccccccccccEEEEEE
Confidence 6883 4687666553
No 37
>PRK04374 PII uridylyl-transferase; Provisional
Probab=40.11 E-value=12 Score=39.94 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHh------------------cCCCCCcceeeeeeecccce
Q 025345 123 PQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 123 pqi~HllQTAEaIR~------------------d~P~pdW~qLtGLIHDLGKv 157 (254)
+.-+|.+.+=+.+++ .-+.++.+-|++|+||+||-
T Consensus 449 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGKg 501 (869)
T PRK04374 449 TVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAKG 501 (869)
T ss_pred cHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccCC
Confidence 455687777665542 11347889999999999993
No 38
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=40.04 E-value=44 Score=25.73 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=34.9
Q ss_pred CcccCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHHHhc
Q 025345 97 KAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRKD 138 (254)
Q Consensus 97 ~~~MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaIR~d 138 (254)
+.++|.-+|+..|.++|..- +++++|.....+++-+-++-+.
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~ 45 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKL 45 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999776 6899999998888887766543
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=39.29 E-value=9.9 Score=39.74 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHh---cCCCCCcceeeeeeeccccee
Q 025345 123 PQIQHLLQSAEAIRK---DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 123 pqi~HllQTAEaIR~---d~P~pdW~qLtGLIHDLGKvl 158 (254)
+.-+|.+++-+.+.+ ....|+=+-|++|+||+||-.
T Consensus 380 tVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 380 TIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred cHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 444699988776543 334567788999999999954
No 40
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=38.25 E-value=16 Score=34.72 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCC--CcceeeeeeecccceeeccCCCC-CCCceeecCeee
Q 025345 126 QHLLQSAEAIRKDYPDE--DWLHLTALIHDLGKVLTLPKFGG-LPQWAVVGDTFP 177 (254)
Q Consensus 126 ~HllQTAEaIR~d~P~p--dW~qLtGLIHDLGKvl~l~~fg~-epQWaVvGDTfp 177 (254)
.-+++.+.++-+-||-- +=++..+++||+||++-+ -+. .+.|+|-|+-.+
T Consensus 147 ~~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el--~~~~~~~yt~~g~lig 199 (287)
T COG3481 147 LTVLELYKRISEIYPTVNRELIYAGAILHDIGKVLEL--TGPEATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHhcccccccC--CCcccccceeccceeE
Confidence 33556666666656533 667888999999999976 221 357888887654
No 41
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=36.55 E-value=2.3e+02 Score=26.56 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHccC-CCcccCHHHHHHHhhhccCCCCCCCChhhH-HHHHHHHHHHHhcCCCCCcceeeeeeeccccee
Q 025345 81 TYDFVKKMREEYAKL-DKAEMSIWECCELLNEVVDESDPDLDEPQI-QHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 81 Tvdfv~~~r~~~~~~-~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi-~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl 158 (254)
++++.+++...|.=+ |....|-.+..+.|..+-.. |+...+| .=..-||+.|++.+|- +||+
T Consensus 32 ~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~---~~~~~~i~TS~~at~~~l~~~~~~-------------~kv~ 95 (269)
T COG0647 32 ALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGV---DVTPDDIVTSGDATADYLAKQKPG-------------KKVY 95 (269)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCC---CCCHHHeecHHHHHHHHHHhhCCC-------------CEEE
Confidence 444444444444332 45677777777888874322 3343344 5567788889988752 6666
Q ss_pred eccCCCC--------CCCceeecCeee-----eecccCCCccccc-------------ccccCCCCCCCCCCCCCccccC
Q 025345 159 TLPKFGG--------LPQWAVVGDTFP-----LGCAFDESNVHHK-------------YFKENPDSNNPAYNTKNGIYTE 212 (254)
Q Consensus 159 ~l~~fg~--------epQWaVvGDTfp-----VGC~f~~siV~~e-------------~F~~NPD~~~p~YnTk~GiY~~ 212 (254)
.+ |+ .-.|.++++.=+ |.+..++...|.. |+..|||.. ..|+.| +.|
T Consensus 96 vi---G~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~p 168 (269)
T COG0647 96 VI---GEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRP 168 (269)
T ss_pred EE---CCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-Ccc
Confidence 54 32 225666665444 7777777777754 667899976 456777 678
Q ss_pred CCC
Q 025345 213 GCG 215 (254)
Q Consensus 213 ~CG 215 (254)
+||
T Consensus 169 gaG 171 (269)
T COG0647 169 GAG 171 (269)
T ss_pred CcH
Confidence 887
No 42
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=36.48 E-value=14 Score=30.20 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 025345 118 PDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDL 154 (254)
Q Consensus 118 PD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDL 154 (254)
.....|-|.|++++|+.+..-+ -..=...+||+||.
T Consensus 14 ~~~g~py~~H~~~va~~l~~~~-~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 14 RKSGEPYISHPLEVAEILAELG-LDEETIAAALLHDV 49 (153)
T ss_dssp -ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred CCCCCcHHHHHHHHHHHHHHcC-CCHHHHhhheeecH
Confidence 3456789999999999996655 22235688899984
No 43
>PRK03059 PII uridylyl-transferase; Provisional
Probab=36.13 E-value=13 Score=39.30 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHh------------------cCCCCCcceeeeeeecccc
Q 025345 123 PQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (254)
Q Consensus 123 pqi~HllQTAEaIR~------------------d~P~pdW~qLtGLIHDLGK 156 (254)
+.-+|.+.|-+.+++ .-++++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 445788888777643 1123678899999999999
No 44
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=34.01 E-value=18 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=14.0
Q ss_pred eeecccceeeccCCCCCCCceeecCeeeeec
Q 025345 150 LIHDLGKVLTLPKFGGLPQWAVVGDTFPLGC 180 (254)
Q Consensus 150 LIHDLGKvl~l~~fg~epQWaVvGDTfpVGC 180 (254)
.||.||+|... .|.|...-=.||+|=
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy 30 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGY 30 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCE
Confidence 38999999944 356777777899993
No 45
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=33.80 E-value=50 Score=31.76 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=45.5
Q ss_pred ccCHHHHHHHhhhccCCCCCCCChhhHHH------------HHHHHHHHHhcCCCCCcceeeeeeecccceeeccCCCCC
Q 025345 99 EMSIWECCELLNEVVDESDPDLDEPQIQH------------LLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGL 166 (254)
Q Consensus 99 ~MsIwEA~e~Ln~lVDeSDPD~dlpqi~H------------llQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~l~~fg~e 166 (254)
|..+|+|+--=-+|+.+|.=|.|++++-. +=-||||.|++ ||-=|+.|-+||-| |
T Consensus 179 EYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d---~~L~q~~g~v~dSG----------E 245 (300)
T COG1023 179 EYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD---PDLDQISGRVSDSG----------E 245 (300)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC---CCHHHhcCeeccCC----------C
Confidence 56677776666666777999999998843 33589999996 37778888888854 6
Q ss_pred CCceee
Q 025345 167 PQWAVV 172 (254)
Q Consensus 167 pQWaVv 172 (254)
+.|+|.
T Consensus 246 GrWTv~ 251 (300)
T COG1023 246 GRWTVE 251 (300)
T ss_pred ceeehH
Confidence 688764
No 46
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=33.20 E-value=12 Score=38.66 Aligned_cols=14 Identities=50% Similarity=0.954 Sum_probs=12.2
Q ss_pred eeeeeeecccceee
Q 025345 146 HLTALIHDLGKVLT 159 (254)
Q Consensus 146 qLtGLIHDLGKvl~ 159 (254)
.+.||+||+||++-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46899999999995
No 47
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=33.08 E-value=41 Score=28.39 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=15.8
Q ss_pred cccCHHHHHHHhhhccCCCCCCCChhhH----HHHHHHH
Q 025345 98 AEMSIWECCELLNEVVDESDPDLDEPQI----QHLLQSA 132 (254)
Q Consensus 98 ~~MsIwEA~e~Ln~lVDeSDPD~dlpqi----~HllQTA 132 (254)
..||+.||+..|| |++ .++...| .|||..-
T Consensus 53 ~~Mtl~EA~~ILn--v~~---~~~~eeI~k~y~~Lf~~N 86 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKE---ELSREEIQKRYKHLFKAN 86 (127)
T ss_dssp ----HHHHHHHHT----G-----SHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHcC--CCC---ccCHHHHHHHHHHHHhcc
Confidence 4799999999999 555 4444444 6776643
No 48
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=32.63 E-value=16 Score=32.92 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=25.0
Q ss_pred CChhhHHHHHHHHHHHHh-c----CCCCCcceeeeeeeccccee
Q 025345 120 LDEPQIQHLLQSAEAIRK-D----YPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 120 ~dlpqi~HllQTAEaIR~-d----~P~pdW~qLtGLIHDLGKvl 158 (254)
-++.-+...+..|.+|-+ . .-++.=+-+++|+||+|+.-
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~ 98 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTD 98 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcccc
Confidence 334445555566666643 2 23566678999999999853
No 49
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=31.76 E-value=13 Score=38.99 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcC------------------CCCCcceeeeeeecccce
Q 025345 125 IQHLLQSAEAIRKDY------------------PDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 125 i~HllQTAEaIR~d~------------------P~pdW~qLtGLIHDLGKv 157 (254)
-+|.+.+.+.+.+-. ++++.+-|++|+||+||-
T Consensus 430 d~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg 480 (850)
T TIGR01693 430 DEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKG 480 (850)
T ss_pred hHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcC
Confidence 358888877765421 135678999999999993
No 50
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=31.19 E-value=27 Score=27.66 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.3
Q ss_pred chhHHHHHHhhcCC
Q 025345 226 DDYMYLVCLLCFES 239 (254)
Q Consensus 226 DEYlY~Vlk~~~~~ 239 (254)
-.|||+||+-||.|
T Consensus 22 kd~lY~~Lr~YHqS 35 (79)
T cd07353 22 KDYLYDVLRMYHQS 35 (79)
T ss_pred HHHHHHHHHHHHhc
Confidence 36999999999987
No 51
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=30.65 E-value=18 Score=23.99 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=8.1
Q ss_pred ceeecCeeeee
Q 025345 169 WAVVGDTFPLG 179 (254)
Q Consensus 169 WaVvGDTfpVG 179 (254)
=-|+|+|||+|
T Consensus 21 LG~~G~~fpIa 31 (31)
T PF12477_consen 21 LGVIGPTFPIA 31 (31)
T ss_pred ccccccccccC
Confidence 34569999986
No 52
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.87 E-value=73 Score=24.89 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=33.8
Q ss_pred CcccCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHHHh
Q 025345 97 KAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRK 137 (254)
Q Consensus 97 ~~~MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaIR~ 137 (254)
...+|.-+|++.|.++|..- +++++|.+...+++-+-++-+
T Consensus 4 ~k~~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k 45 (80)
T PRK14067 4 KKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLAR 45 (80)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45689999999999999776 799999999888877665544
No 53
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=28.62 E-value=28 Score=32.86 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhhhhhH-HHHHHHH-HHHccCCCcccCHHHHHHHhhhccCCC-CCCCC---hhhHHHHHHHHHHHHhc
Q 025345 65 RQKSVEEFYRLQHINQTY-DFVKKMR-EEYAKLDKAEMSIWECCELLNEVVDES-DPDLD---EPQIQHLLQSAEAIRKD 138 (254)
Q Consensus 65 r~~~V~~fYr~~H~~QTv-dfv~~~r-~~~~~~~~~~MsIwEA~e~Ln~lVDeS-DPD~d---lpqi~HllQTAEaIR~d 138 (254)
-+++...||++--..+.+ -|-.+.- .+|-+- =|..+| =|+++ +-.|+-|.|+|+-|+..
T Consensus 12 Lper~~~f~~~~~~~~~~~~~~~~~lq~~YP~~---------------LL~p~S~yPq~~~yp~~diq~Ly~~~~~C~~~ 76 (262)
T PF11884_consen 12 LPERWQAFYQLFWQSSAIASYDIRELQSQYPTR---------------LLTPDSMYPQFSQYPWQDIQQLYQLAQTCQGP 76 (262)
T ss_pred hHHHHHHHHHHHhhhCcccccCHHHHHhhCChh---------------hcCccccCCCcccCCHHHHHHHHHHHhhcCCC
Confidence 456788899887664433 3322222 255430 022344 48876 77899999999988876
Q ss_pred CC---------------------CCCcceeeeeeeccccee
Q 025345 139 YP---------------------DEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 139 ~P---------------------~pdW~qLtGLIHDLGKvl 158 (254)
-| .+.||.-.|+||-.|.-.
T Consensus 77 ~p~sP~ite~l~FerAlC~g~~L~~~WFar~~~iHP~GGSY 117 (262)
T PF11884_consen 77 LPLSPLITEPLVFERALCQGTALPPRWFARSGLIHPGGGSY 117 (262)
T ss_pred CCCCcccccchHHHHHHhCCCCCChHHHHhCCCcCCCCCcH
Confidence 54 568999999999998654
No 54
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=28.04 E-value=1.1e+02 Score=29.69 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=34.8
Q ss_pred cccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeee
Q 025345 98 AEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIH 152 (254)
Q Consensus 98 ~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIH 152 (254)
...|..||..+++. |+.+ .-+++.|..+|+.| ++.=.||.++||
T Consensus 12 ~~~~~~e~~~l~~~------~~~~----~~L~~aA~~~R~~~-~g~~V~l~~ii~ 55 (335)
T COG0502 12 ERWTLDEALALLDL------PDED----ELLFEAAQKHRLHF-DGNEVQLSTLIS 55 (335)
T ss_pred CCcCHHHHHHHHcC------Ccch----HHHHHHHHHHHHhc-CCCeEEEEEEEE
Confidence 46788888888763 3333 56899999999999 778899999886
No 55
>PRK07094 biotin synthase; Provisional
Probab=28.03 E-value=1.2e+02 Score=27.51 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=24.0
Q ss_pred cCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcC
Q 025345 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~ 139 (254)
+|..||+++|+. +| ...++-|+++|..||+.+
T Consensus 1 ~t~~e~~~ll~~------~~--~~~~~~L~~~A~~~r~~~ 32 (323)
T PRK07094 1 LTRDEILELLSN------DD--EEELKYLFKAADEVRKKY 32 (323)
T ss_pred CCHHHHHHHhcC------CC--HHHHHHHHHHHHHHHHHh
Confidence 477899999854 12 224578999999999987
No 56
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=27.58 E-value=69 Score=27.58 Aligned_cols=56 Identities=29% Similarity=0.441 Sum_probs=38.2
Q ss_pred CCCcccCHHHHHHHhh---hccCCCCCCC-----------ChhhHHHHHHHHHHHHhcCCCCCcceeeeeeeccc
Q 025345 95 LDKAEMSIWECCELLN---EVVDESDPDL-----------DEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLG 155 (254)
Q Consensus 95 ~~~~~MsIwEA~e~Ln---~lVDeSDPD~-----------dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLG 155 (254)
|+-.-.++||=+.+|+ .+||-+++.- +-.+...++.....||+-+|+..- +|.|||
T Consensus 29 F~C~~l~~Le~l~l~~~~~~~v~l~~~~~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~-----ilY~Lg 98 (142)
T PF07801_consen 29 FDCSLLETLEDLKLLDNPGPFVDLSSSSKNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKI-----ILYDLG 98 (142)
T ss_pred ecchHHHHHhhhhhccCCCcceecccccccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcE-----EEEeCC
Confidence 5666677888887777 4566444333 334568889999999999986653 355666
No 57
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.57 E-value=2.3e+02 Score=24.56 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH-HHccCC-----CcccCHHHHHHHhhhccCCCCCCCChhhH----HHHHHHH
Q 025345 68 SVEEFYRLQHINQTYDFVKKMRE-EYAKLD-----KAEMSIWECCELLNEVVDESDPDLDEPQI----QHLLQSA 132 (254)
Q Consensus 68 ~V~~fYr~~H~~QTvdfv~~~r~-~~~~~~-----~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi----~HllQTA 132 (254)
.+-+.||++ ..|+.+=....-. +=+.-+ .++||+-||+..||- + ++++..-| +|||+..
T Consensus 19 Af~~A~RQe-ia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV--~---~~ln~eei~k~yehLFevN 87 (132)
T KOG3442|consen 19 AFVQAYRQE-IAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNV--K---EPLNREEIEKRYEHLFEVN 87 (132)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCC--C---CCCCHHHHHHHHHHHHhcc
Confidence 456677764 3344443322221 112222 367999999999984 2 25665555 7888753
No 58
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.55 E-value=97 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=33.9
Q ss_pred CCcccCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHHHh
Q 025345 96 DKAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRK 137 (254)
Q Consensus 96 ~~~~MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaIR~ 137 (254)
+..++|.-+|++.|.++|..- +++++|..+..+++-|..+-+
T Consensus 6 ~~~~~sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k 48 (80)
T PRK00977 6 KSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALAR 48 (80)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 456799999999999999776 689999999888876655433
No 59
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=27.43 E-value=29 Score=33.93 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCC-cceeeeeeecccceee
Q 025345 122 EPQIQHLLQSAEAIRKDYP-DED-WLHLTALIHDLGKVLT 159 (254)
Q Consensus 122 lpqi~HllQTAEaIR~d~P-~pd-W~qLtGLIHDLGKvl~ 159 (254)
.+...|.+++-+.+.+--. .++ .+.|+.|+||+||-..
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~t 296 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPAT 296 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCCC
Confidence 3567898888776643211 123 6899999999999654
No 60
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.05 E-value=57 Score=29.71 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=25.9
Q ss_pred CCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcC
Q 025345 95 LDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (254)
Q Consensus 95 ~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~ 139 (254)
..+++.||.||+++||. -.-+|.+ ||||-|-..+
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 44789999999999998 3444544 5788888776
No 61
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=25.42 E-value=1.2e+02 Score=21.43 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=19.6
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcc
Q 025345 113 VDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWL 145 (254)
Q Consensus 113 VDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~ 145 (254)
-.|+|+|++-.-..|-.--|=-.-+--|-|+|+
T Consensus 9 ~~E~DGdteddT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 9 SSESDGDTEDDTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred ccccCCCCcchhHHHHHHHHHHHHcCCCCCCcC
Confidence 478899998555544332233333344678886
No 62
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=24.67 E-value=18 Score=34.27 Aligned_cols=18 Identities=56% Similarity=0.927 Sum_probs=13.9
Q ss_pred CCcc---eeeeeeecccceee
Q 025345 142 EDWL---HLTALIHDLGKVLT 159 (254)
Q Consensus 142 pdW~---qLtGLIHDLGKvl~ 159 (254)
+.|- -++||.|||||++.
T Consensus 101 ~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 101 PAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred hhhHHHHHHHHHHhccCccee
Confidence 4664 36799999999774
No 63
>PF10809 DUF2732: Protein of unknown function (DUF2732); InterPro: IPR020126 This entry represents a group of proteins with no known function
Probab=24.42 E-value=2.4e+02 Score=22.19 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=42.8
Q ss_pred cCccccCCccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCcccCHHHHHHHhhh
Q 025345 51 SFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNE 111 (254)
Q Consensus 51 ~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~r~~~~~~~~~~MsIwEA~e~Ln~ 111 (254)
.+...+....++.....-+.+-=.+..+.|...|..+...==...-..+||--||+|+|..
T Consensus 4 ~e~~~~~~~~d~~~l~~lL~~AR~eeRk~~A~~~S~RL~~LA~hi~~~~ls~~E~~ELLrq 64 (77)
T PF10809_consen 4 TETRSMKTGADAASLNELLNKARMEERKDRADAFSSRLDALAAHIANEELSAVEAAELLRQ 64 (77)
T ss_pred chhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3334454444432244556666678889999999877766666666789999999999975
No 64
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=24.38 E-value=44 Score=34.75 Aligned_cols=34 Identities=35% Similarity=0.358 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 025345 120 LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDL 154 (254)
Q Consensus 120 ~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDL 154 (254)
...|-|.|.+++|+.+..-+.+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 346889999999999997654333 4668999996
No 65
>PF13446 RPT: A repeated domain in UCH-protein
Probab=24.15 E-value=1.2e+02 Score=21.47 Aligned_cols=29 Identities=34% Similarity=0.364 Sum_probs=21.7
Q ss_pred ccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHH
Q 025345 99 EMSIWECCELLNEVVDESDPDLDEPQIQHLLQSA 132 (254)
Q Consensus 99 ~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTA 132 (254)
.|++-+|++.|.- +|+++-..|.-++|+.
T Consensus 1 ~~~~~~Ay~~Lgi-----~~~~~Dd~Ii~~f~~~ 29 (62)
T PF13446_consen 1 YMDVEEAYEILGI-----DEDTDDDFIISAFQSK 29 (62)
T ss_pred CCCHHHHHHHhCc-----CCCCCHHHHHHHHHHH
Confidence 4899999999983 5667766777766654
No 66
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=24.03 E-value=43 Score=20.87 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.3
Q ss_pred CCCCCCCccccCCCC
Q 025345 201 PAYNTKNGIYTEGCG 215 (254)
Q Consensus 201 p~YnTk~GiY~~~CG 215 (254)
.-||++-|+|+++=+
T Consensus 5 ~qyn~P~glys~~n~ 19 (26)
T smart00735 5 KQYNSPIGLYSSENI 19 (26)
T ss_pred cccCCCCCCCCcccH
Confidence 579999999988643
No 67
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=23.45 E-value=1.2e+02 Score=22.80 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=28.0
Q ss_pred cCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHH
Q 025345 100 MSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAI 135 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaI 135 (254)
||.-+|++.|.++|-.- +++++|.+..-+++-+.++
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L 37 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLESGDLALEEALNLFERGMAL 37 (67)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 78899999999998665 7889988886666655443
No 68
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=22.85 E-value=82 Score=33.15 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeeeccc
Q 025345 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLG 155 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLG 155 (254)
+..|+++-......--.....|-|.|.+++|+.+..-+-+.+ ...+||+||.=
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-ti~AaLLHDvv 75 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYE-TLMAALLHDVI 75 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHH-HHHHhcccchh
Confidence 344555554333211112345778999999999986543222 46789999973
No 69
>PRK10119 putative hydrolase; Provisional
Probab=22.32 E-value=67 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=34.3
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHhc-CCCCCcceeeeeeecccc
Q 025345 113 VDESDPDLDEPQIQHLLQSAEAIRKD-YPDEDWLHLTALIHDLGK 156 (254)
Q Consensus 113 VDeSDPD~dlpqi~HllQTAEaIR~d-~P~pdW~qLtGLIHDLGK 156 (254)
....||.=|+.-|....++|..|-+. +.+..-+.+++|+||+|-
T Consensus 18 l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 18 HQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred hhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 34457788888888888889888543 346778889999999975
No 70
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=22.01 E-value=1.2e+02 Score=29.96 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=34.6
Q ss_pred ccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHH---HHHhcCC----CCCcceeeeeeeccccee
Q 025345 99 EMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAE---AIRKDYP----DEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 99 ~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAE---aIR~d~P----~pdW~qLtGLIHDLGKvl 158 (254)
+-...+.++-|..++..-|+.|. .|+..+|. ++-.... .-+=+++++.+||+|||-
T Consensus 165 ~~~~~~t~~~L~~~~E~R~~etg----~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 165 EDNLDETLEELAALLEVRDYETG----DHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 33334788888888866677665 34443332 2222211 126678899999999986
No 71
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.72 E-value=1.2e+02 Score=24.66 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhhhccCCC-CCCCChhhHHHHHHHHHHHHhc
Q 025345 98 AEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRKD 138 (254)
Q Consensus 98 ~~MsIwEA~e~Ln~lVDeS-DPD~dlpqi~HllQTAEaIR~d 138 (254)
.+||.-+|+..|+++|..- ++|++|....-+++-+-++-+.
T Consensus 6 ~~~sFEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~ 47 (95)
T PRK14069 6 SKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKI 47 (95)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999665 6899999988888877666554
No 72
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=21.61 E-value=95 Score=28.32 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.4
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcceeeeee
Q 025345 120 LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALI 151 (254)
Q Consensus 120 ~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLI 151 (254)
+-|.-|.|++-|+||||.++ +-|.|+|
T Consensus 145 ~~LGtINHtlLt~eal~~~g-----l~l~G~I 171 (223)
T COG0132 145 IKLGTINHTLLTVEALRARG-----LPLAGWV 171 (223)
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCEEEEE
Confidence 45778999999999999988 3366654
No 73
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=21.40 E-value=93 Score=29.48 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHccCC--CcccCHHHHHHHhhh-----ccCCCCCCCChhhHHHHHHHHHHHHhcC
Q 025345 79 NQTYDFVKKMREEYAKLD--KAEMSIWECCELLNE-----VVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (254)
Q Consensus 79 ~QTvdfv~~~r~~~~~~~--~~~MsIwEA~e~Ln~-----lVDeSDPD~dlpqi~HllQTAEaIR~d~ 139 (254)
.|||+.|.. ++=|-.|+ .++||.|||+|.+.+ ++=.||-+.-.+.+--.=.||=.+++.|
T Consensus 167 ~etv~~vld-~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD~~s~~sd~lavprtal~m~~~g 233 (254)
T COG1099 167 EETVDEVLD-EEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSDAGSAASDPLAVPRTALEMEERG 233 (254)
T ss_pred HHHHHHHHh-ccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecccccccccchhhhHHHHHHHHhc
Confidence 378887764 55666665 689999999999964 5666776666666665666666665443
No 74
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.59 E-value=66 Score=31.66 Aligned_cols=72 Identities=24% Similarity=0.464 Sum_probs=46.4
Q ss_pred HHHHHHHHccCCCcccCHHHHHHHhhhccCCCC----CC-CCh---hhHHHHHHHHHHH---------------HhcCCC
Q 025345 85 VKKMREEYAKLDKAEMSIWECCELLNEVVDESD----PD-LDE---PQIQHLLQSAEAI---------------RKDYPD 141 (254)
Q Consensus 85 v~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeSD----PD-~dl---pqi~HllQTAEaI---------------R~d~P~ 141 (254)
.++...+|...-|-+-.+.+|++.|+.|-++.. +| .++ -.+.+++.+||.| |.|||.
T Consensus 442 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~ 521 (543)
T PRK06263 442 LKKTMWDYVSIVRNEKGLKKALEEINELKEKLKDLKVNGIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPE 521 (543)
T ss_pred HHHHHHhhCcEEEcHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCc
Confidence 344556777778889999999999988853210 11 111 2457889999886 556773
Q ss_pred --CCcceeeeeeeccccee
Q 025345 142 --EDWLHLTALIHDLGKVL 158 (254)
Q Consensus 142 --pdW~qLtGLIHDLGKvl 158 (254)
+.|..-+ +--.||+.
T Consensus 522 ~~~~~~~~~--~~~~~~~~ 538 (543)
T PRK06263 522 TNDEWFGNI--ILNKNKIK 538 (543)
T ss_pred cChhhcCeE--EecCCccc
Confidence 3675444 33467765
No 75
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=20.57 E-value=54 Score=31.28 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHHHHHHHccCCCcccCHHHHHHHhh-----hcc-------CCCCCCCChhhH----HHHHHHHHHHH----hcC-CCCC
Q 025345 85 VKKMREEYAKLDKAEMSIWECCELLN-----EVV-------DESDPDLDEPQI----QHLLQSAEAIR----KDY-PDED 143 (254)
Q Consensus 85 v~~~r~~~~~~~~~~MsIwEA~e~Ln-----~lV-------DeSDPD~dlpqi----~HllQTAEaIR----~d~-P~pd 143 (254)
.+-+-.-|..+++.--||-||+..|= +|| --+.|+..--+. ++++.||-.++ .-+ |+.+
T Consensus 62 l~lANS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~ 141 (289)
T COG1639 62 LRLANSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSD 141 (289)
T ss_pred HHHhcchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 33344567788888899999987542 222 112333332233 55555655443 334 6778
Q ss_pred cceeeeeeecccceeeccCCCCCCCceeecCeeeeecccCCCcccccccccCCCCCCCCCCCCCcccc-CCCCccccccc
Q 025345 144 WLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYT-EGCGLDNVMIS 222 (254)
Q Consensus 144 W~qLtGLIHDLGKvl~l~~fg~epQWaVvGDTfpVGC~f~~siV~~e~F~~NPD~~~p~YnTk~GiY~-~~CGLdNV~mS 222 (254)
=.-++||+|.+|+|+++..| |+|.-+ .|.. -..|+|-.+ .+-+..|+-. +-- -.-++-.
T Consensus 142 ~~y~~gLLh~lG~l~ll~~~---~~~~~~------~~~~---------~~~~~~~~~-~~~e~~~i~~h~~I-ga~llr~ 201 (289)
T COG1639 142 EAYTAGLLHNLGILVLLTDF---PDHCEL------LDYL---------LALNNDELL-ALDEELGIFGHASI-GAYLLRR 201 (289)
T ss_pred HHHHHHHHHHccHHHHHHHh---HHHHHH------HHHH---------HHhccCccc-chHHHhccccchHH-HHHHHHH
Confidence 88899999999999988434 456322 2221 112222111 1222222221 000 1246778
Q ss_pred cCcchhHHHHHHhhcC
Q 025345 223 WGHDDYMYLVCLLCFE 238 (254)
Q Consensus 223 WGHDEYlY~Vlk~~~~ 238 (254)
|+=|+=|+.+.++++.
T Consensus 202 W~fp~~l~e~i~~~~~ 217 (289)
T COG1639 202 WNFPDDLIEAIRFHHN 217 (289)
T ss_pred cCCCHHHHHHHHHhhc
Confidence 9999999999999866
No 76
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=20.54 E-value=64 Score=32.02 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcceeeeeeecccceee
Q 025345 123 PQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLT 159 (254)
Q Consensus 123 pqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~ 159 (254)
+...|.+.+-..+.+.- .+-++-+++|+||+||-..
T Consensus 228 d~~~htl~~l~~~~~~~-~~l~lR~AaLlHDiGK~~t 263 (417)
T PRK13298 228 NLGNYILMGLSKISKLT-KDIDIRFSYLCQFLGSMIP 263 (417)
T ss_pred hHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhhcCCCC
Confidence 34567776666555433 2446778999999999753
No 77
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=20.47 E-value=97 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=20.3
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCC
Q 025345 119 DLDEPQIQHLLQSAEAIRKDYPDE 142 (254)
Q Consensus 119 D~dlpqi~HllQTAEaIR~d~P~p 142 (254)
.++-|.+..+-+.||+||+.+|+.
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k 409 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQ 409 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCC
Confidence 456788899999999999999843
No 78
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.40 E-value=4.4e+02 Score=20.80 Aligned_cols=18 Identities=33% Similarity=0.780 Sum_probs=12.1
Q ss_pred CCcCCCCcccCccccCCccc
Q 025345 42 DGFVAPEINSFGKTFRDYNA 61 (254)
Q Consensus 42 ~~f~~p~~~~~~~~FR~Y~~ 61 (254)
.|+.+|.- ....+|.|+.
T Consensus 23 ~GLl~p~r--~~~g~R~Y~~ 40 (112)
T cd01282 23 QGLLVPER--SANGYRDYDE 40 (112)
T ss_pred CCCCCCCc--CCCCCeecCH
Confidence 36777853 3457999985
Done!