Query 025345
Match_columns 254
No_of_seqs 140 out of 209
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 08:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 6E-108 2E-112 743.1 11.7 206 44-254 16-226 (289)
2 2ibn_A Inositol oxygenase; red 100.0 1E-96 3E-101 660.1 9.7 184 67-254 3-187 (250)
3 2o08_A BH1327 protein; putativ 94.2 0.014 4.7E-07 47.9 1.2 52 100-158 2-57 (188)
4 3ccg_A HD superfamily hydrolas 93.8 0.012 4E-07 48.4 0.1 52 100-158 3-58 (190)
5 2ogi_A Hypothetical protein SA 93.4 0.029 9.8E-07 46.5 1.8 52 100-158 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 89.8 0.16 5.4E-06 44.4 2.6 69 92-160 72-160 (305)
7 3i7a_A Putative metal-dependen 88.3 0.25 8.6E-06 42.5 2.8 73 88-160 65-165 (281)
8 3ljx_A MMOQ response regulator 86.0 0.28 9.7E-06 42.7 1.8 69 92-160 61-150 (288)
9 3b57_A LIN1889 protein; Q92AN1 85.8 0.29 1E-05 40.8 1.8 56 104-159 9-65 (209)
10 2qgs_A Protein Se1688; alpha-h 84.6 0.36 1.2E-05 40.8 1.8 55 103-157 8-64 (225)
11 3dto_A BH2835 protein; all alp 84.1 0.45 1.5E-05 40.9 2.2 57 102-158 7-64 (223)
12 3djb_A Hydrolase, HD family; a 83.9 0.36 1.2E-05 41.4 1.5 57 102-158 7-64 (223)
13 2pjq_A Uncharacterized protein 82.0 0.5 1.7E-05 40.2 1.6 58 100-157 10-68 (231)
14 3m1t_A Putative phosphohydrola 78.3 0.61 2.1E-05 40.2 1.0 66 94-160 62-146 (275)
15 2pq7_A Predicted HD superfamil 76.9 1.2 4E-05 37.0 2.3 56 102-157 15-71 (220)
16 3sk9_A Putative uncharacterize 74.7 0.61 2.1E-05 41.3 -0.0 43 120-164 22-84 (265)
17 1vqr_A Hypothetical protein CJ 71.4 0.82 2.8E-05 39.6 -0.0 73 88-160 72-166 (297)
18 3kq5_A Hypothetical cytosolic 68.5 0.73 2.5E-05 43.9 -1.0 36 123-158 75-119 (393)
19 3mem_A Putative signal transdu 50.1 2.2 7.7E-05 39.7 -1.2 69 92-160 230-323 (457)
20 3m5f_A Metal dependent phospho 48.4 4.5 0.00015 36.2 0.5 17 143-159 57-73 (244)
21 3tm8_A BD1817, uncharacterized 48.0 4.9 0.00017 35.7 0.7 36 124-159 167-210 (328)
22 3gw7_A Uncharacterized protein 43.3 4.8 0.00016 35.0 -0.1 41 117-157 22-63 (239)
23 2hek_A Hypothetical protein; p 40.8 8.2 0.00028 35.6 1.0 37 123-159 50-91 (371)
24 2wzo_A Transforming growth fac 36.6 12 0.0004 30.1 1.2 31 145-180 7-38 (146)
25 2dqb_A Deoxyguanosinetriphosph 29.8 10 0.00036 35.3 -0.2 18 141-158 97-114 (376)
26 4dmb_A HD domain-containing pr 28.9 7 0.00024 33.6 -1.4 43 123-178 45-90 (204)
27 3nqw_A CG11900; stringent resp 28.9 29 0.001 28.7 2.4 53 102-154 9-64 (179)
28 2e5v_A L-aspartate oxidase; ar 28.3 46 0.0016 30.4 3.8 39 85-135 398-436 (472)
29 3nr1_A HD domain-containing pr 26.7 39 0.0013 28.0 2.8 34 121-154 28-62 (178)
30 3aql_A Poly(A) polymerase; tra 25.4 14 0.00047 34.5 -0.2 35 123-157 266-302 (415)
31 1chu_A Protein (L-aspartate ox 24.8 53 0.0018 30.8 3.6 51 85-135 443-500 (540)
32 2paq_A 5'-deoxynucleotidase YF 24.3 11 0.00038 31.7 -1.0 38 122-159 30-77 (201)
33 2q14_A Phosphohydrolase; BT420 23.7 9 0.00031 36.1 -1.8 15 144-158 88-102 (410)
34 4a4a_A Alpha-N-acetylglucosami 22.1 1.3E+02 0.0044 31.4 6.1 77 84-171 459-548 (914)
35 1vj7_A Bifunctional RELA/SPOT; 20.9 36 0.0012 31.9 1.6 52 102-154 28-79 (393)
36 2ksn_A Ubiquitin domain-contai 20.3 1E+02 0.0035 25.6 4.0 47 81-138 34-83 (137)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=6.4e-108 Score=743.07 Aligned_cols=206 Identities=42% Similarity=0.800 Sum_probs=188.3
Q ss_pred cCCCCcc----cCccccCCccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCcccCHHHHHHHhhhccCCCCCC
Q 025345 44 FVAPEIN----SFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPD 119 (254)
Q Consensus 44 f~~p~~~----~~~~~FR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeSDPD 119 (254)
|..|+.+ +++++||||+. +.++++|++|||+||++||||||++||++|++|+|++|||||||++||+||||||||
T Consensus 16 ~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~LvDeSDPD 94 (289)
T 2huo_A 16 VYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDESDPD 94 (289)
T ss_dssp ----------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCSSCTT
T ss_pred eeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCc
Confidence 5666655 67889999997 557889999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecccceeeccCCCCCCCceeecCeeeeecccCCCccccc-ccccCCCC
Q 025345 120 LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHK-YFKENPDS 198 (254)
Q Consensus 120 ~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDLGKvl~l~~fg~epQWaVvGDTfpVGC~f~~siV~~e-~F~~NPD~ 198 (254)
+|+|||+||||||||||+|||++||||||||||||||||+| | ++|||+||||||||||+|+++|||++ ||++|||.
T Consensus 95 ~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~--~-~epQW~vvGDTfpVGC~f~~~iv~~e~~F~~NpD~ 171 (289)
T 2huo_A 95 VDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL--W-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDL 171 (289)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG--G-TCCGGGTSSCCCBSSSCCCTTSTTTTTSCTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh--c-CCCceeeecCcceeccccccccccchhhccCCCCC
Confidence 99999999999999999999877999999999999999987 4 69999999999999999999999999 99999999
Q ss_pred CCCCCCCCCccccCCCCccccccccCcchhHHHHHHhhcCCCCccccchhccccCC
Q 025345 199 NNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVCLLCFESNHNCAGAYSSRSTKI 254 (254)
Q Consensus 199 ~~p~YnTk~GiY~~~CGLdNV~mSWGHDEYlY~Vlk~~~~~~~~~~g~~~~r~~~~ 254 (254)
+||+||||||||+||||||||+||||||||||+|+|++ +|+||+|||||||+-|.
T Consensus 172 ~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n-~stLP~eaL~mIRyHSF 226 (289)
T 2huo_A 172 QDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFN-KFSLPSEAFYMIRFHSF 226 (289)
T ss_dssp GSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHT-TCCCCHHHHHHHHHTTC
T ss_pred CCccccccCCcccCCCCccceeecccchHHHHHHHHcC-CCCCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988 99999999999999773
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1e-96 Score=660.14 Aligned_cols=184 Identities=46% Similarity=0.818 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHccCCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcce
Q 025345 67 KSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLH 146 (254)
Q Consensus 67 ~~V~~fYr~~H~~QTvdfv~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~q 146 (254)
++|++|||+||++||||||++||++|++|+|++|||||||++||+||||||||+++|||+|+|||||+||+|||+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred eeeeeecccceeeccCCCCCCCceeecCeeeeecccCCCccccc-ccccCCCCCCCCCCCCCccccCCCCccccccccCc
Q 025345 147 LTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHK-YFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGH 225 (254)
Q Consensus 147 LtGLIHDLGKvl~l~~fg~epQWaVvGDTfpVGC~f~~siV~~e-~F~~NPD~~~p~YnTk~GiY~~~CGLdNV~mSWGH 225 (254)
||||||||||+|++ +++|||+||||||||||+|+++|||++ ||++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 468999999999999999999999999 99999999999999999999999999999999999
Q ss_pred chhHHHHHHhhcCCCCccccchhccccCC
Q 025345 226 DDYMYLVCLLCFESNHNCAGAYSSRSTKI 254 (254)
Q Consensus 226 DEYlY~Vlk~~~~~~~~~~g~~~~r~~~~ 254 (254)
|||||+|+|++ +|+||+|||||||+-|.
T Consensus 160 DEYlY~Vlk~n-~stLP~eaL~mIRyhSf 187 (250)
T 2ibn_A 160 DEYMYQVMKFN-KFSLPPEAFYMIRFHSF 187 (250)
T ss_dssp HHHHHHHHHHH-TCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-CCCCCHHHHHHHHHhcc
Confidence 99999999988 99999999999998773
No 3
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=94.15 E-value=0.014 Score=47.89 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=40.0
Q ss_pred cCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh----cCCCCCcceeeeeeeccccee
Q 025345 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~----d~P~pdW~qLtGLIHDLGKvl 158 (254)
|++.++.++|...+++ ....|.+.+|...+. -+-+++-.-++||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999987653 477899988776553 233456678999999999985
No 4
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.76 E-value=0.012 Score=48.35 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=40.2
Q ss_pred cCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh----cCCCCCcceeeeeeeccccee
Q 025345 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~----d~P~pdW~qLtGLIHDLGKvl 158 (254)
|++.++.+.|.+.+++ ....|.+.+|...+. -+-+++-..++||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888999999887653 467899988876552 233566788999999999975
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.39 E-value=0.029 Score=46.45 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=40.4
Q ss_pred cCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh----cCCCCCcceeeeeeeccccee
Q 025345 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~----d~P~pdW~qLtGLIHDLGKvl 158 (254)
|++.++.++|...+++ .-..|.+.+|...+. -+-+++-..++||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8899999999987653 467899988876553 233456788999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=89.76 E-value=0.16 Score=44.42 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=45.1
Q ss_pred HccCCCcccCHHHHHHHhhh--------------ccCCCCCCCChh-hHHHHHHHHHHHHhc-----CCCCCcceeeeee
Q 025345 92 YAKLDKAEMSIWECCELLNE--------------VVDESDPDLDEP-QIQHLLQSAEAIRKD-----YPDEDWLHLTALI 151 (254)
Q Consensus 92 ~~~~~~~~MsIwEA~e~Ln~--------------lVDeSDPD~dlp-qi~HllQTAEaIR~d-----~P~pdW~qLtGLI 151 (254)
|.++.+.--||.+|+-+|-. ......+..+.. -..|.+.+|..++.- .++++-+-++||+
T Consensus 72 ~~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agll 151 (305)
T 3hc1_A 72 LYSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLL 151 (305)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33566777888888776531 112222334433 359999988876631 2356778899999
Q ss_pred ecccceeec
Q 025345 152 HDLGKVLTL 160 (254)
Q Consensus 152 HDLGKvl~l 160 (254)
||+||+...
T Consensus 152 HDIGkl~l~ 160 (305)
T 3hc1_A 152 HDVGEVFIN 160 (305)
T ss_dssp TTHHHHHHH
T ss_pred HHhhHHHHH
Confidence 999999853
No 7
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.32 E-value=0.25 Score=42.55 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=46.1
Q ss_pred HHHHHccCCCcccCHHHHHHHhh--------------hccCCCCCCCC--hh-hHHHHHHHHHHHH---h--------cC
Q 025345 88 MREEYAKLDKAEMSIWECCELLN--------------EVVDESDPDLD--EP-QIQHLLQSAEAIR---K--------DY 139 (254)
Q Consensus 88 ~r~~~~~~~~~~MsIwEA~e~Ln--------------~lVDeSDPD~d--lp-qi~HllQTAEaIR---~--------d~ 139 (254)
.-.-|..+.+.--||.+|+-+|- .+.+...|-.. +. -..|.+.+|..++ + ..
T Consensus 65 aNS~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~ 144 (281)
T 3i7a_A 65 ANSALYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSG 144 (281)
T ss_dssp HHSTTTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HhhHHhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 33345566777889999988753 22233222221 22 3589888875443 2 23
Q ss_pred CCCCcceeeeeeecccceeec
Q 025345 140 PDEDWLHLTALIHDLGKVLTL 160 (254)
Q Consensus 140 P~pdW~qLtGLIHDLGKvl~l 160 (254)
.+++-.-++||+||+||+...
T Consensus 145 ~~~~~~~laGLLHdiGkl~l~ 165 (281)
T 3i7a_A 145 LNYDTLTLAGLVHNIGALPVL 165 (281)
T ss_dssp CCHHHHHHHHHHTTTTHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHH
Confidence 456778899999999998754
No 8
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=86.03 E-value=0.28 Score=42.68 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=44.2
Q ss_pred HccCCCcccCHHHHHHHhh-----h------c---cCCCC-CCCChh-hHHHHHHHHHHHHhc-----CCCCCcceeeee
Q 025345 92 YAKLDKAEMSIWECCELLN-----E------V---VDESD-PDLDEP-QIQHLLQSAEAIRKD-----YPDEDWLHLTAL 150 (254)
Q Consensus 92 ~~~~~~~~MsIwEA~e~Ln-----~------l---VDeSD-PD~dlp-qi~HllQTAEaIR~d-----~P~pdW~qLtGL 150 (254)
|.++.+.--||.+|+-+|= + + ++... ...++. -..|.+++|..+|.- .++++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4456677789999987653 1 1 12111 123433 358999998877632 125677899999
Q ss_pred eecccceeec
Q 025345 151 IHDLGKVLTL 160 (254)
Q Consensus 151 IHDLGKvl~l 160 (254)
+||+||+++.
T Consensus 141 LhdiGkl~l~ 150 (288)
T 3ljx_A 141 LADVGRLALA 150 (288)
T ss_dssp HTTHHHHHHH
T ss_pred HHhccHHHHH
Confidence 9999999864
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=85.85 E-value=0.29 Score=40.75 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh-cCCCCCcceeeeeeecccceee
Q 025345 104 ECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKVLT 159 (254)
Q Consensus 104 EA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~-d~P~pdW~qLtGLIHDLGKvl~ 159 (254)
++.+.+...+...|+.-++.-+...++.|..|.+ .+.+++-+.+++|+||+||.-.
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~~ 65 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKL 65 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC---
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcccC
Confidence 3444455555444556665555556666777765 3567788999999999999753
No 10
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=84.62 E-value=0.36 Score=40.80 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHHHHHhhhccCCCCCCCChhhHHHHHHHHHHH-Hh-cCCCCCcceeeeeeecccce
Q 025345 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAI-RK-DYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 103 wEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaI-R~-d~P~pdW~qLtGLIHDLGKv 157 (254)
.++.+.+...+...|+.-++.-+...+++|..| .+ .+.+++-+.+++|+||+||.
T Consensus 8 ~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 8 KKAYEYMKSFHQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 334444555554334444333333344455556 54 34578889999999999994
No 11
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=84.12 E-value=0.45 Score=40.93 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh-cCCCCCcceeeeeeeccccee
Q 025345 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~-d~P~pdW~qLtGLIHDLGKvl 158 (254)
|..+.+.+.......||.-++.-+.-...+|..|-+ .+-+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 444555566666666777777777777777777743 345778899999999999964
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=83.95 E-value=0.36 Score=41.42 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=39.8
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhc-CCCCCcceeeeeeeccccee
Q 025345 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD-YPDEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d-~P~pdW~qLtGLIHDLGKvl 158 (254)
|..+.+.+.......||.-++.-+.-.+.+|..|-+. +.+++.+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~k 64 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEK 64 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 3444555566666666777777777777778777543 45778899999999999954
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=81.99 E-value=0.5 Score=40.18 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=40.7
Q ss_pred cCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh-cCCCCCcceeeeeeecccce
Q 025345 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 100 MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~-d~P~pdW~qLtGLIHDLGKv 157 (254)
+-|.++.+.+...+...|+.-++.-+...++.|..|.+ .+.+++-+.+++|+||+||.
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDD 68 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCcc
Confidence 33556666666666655666666666666677777765 34578889999999999994
No 14
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=78.31 E-value=0.61 Score=40.21 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=41.8
Q ss_pred cCCCcccCHHHHHHHhh--------------hccCCCCCCCChhh-HHHHHHHHHHHHh----cCCCCCcceeeeeeecc
Q 025345 94 KLDKAEMSIWECCELLN--------------EVVDESDPDLDEPQ-IQHLLQSAEAIRK----DYPDEDWLHLTALIHDL 154 (254)
Q Consensus 94 ~~~~~~MsIwEA~e~Ln--------------~lVDeSDPD~dlpq-i~HllQTAEaIR~----d~P~pdW~qLtGLIHDL 154 (254)
++.+.--||.+|+-+|= ...+. .|..++.. ..|.+.+|..++. -+.+++-.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 44556678888877642 11222 23445444 4899988876552 34467788999999999
Q ss_pred cceeec
Q 025345 155 GKVLTL 160 (254)
Q Consensus 155 GKvl~l 160 (254)
||++..
T Consensus 141 Gkl~l~ 146 (275)
T 3m1t_A 141 GELLIV 146 (275)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 999864
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=76.94 E-value=1.2 Score=37.02 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHh-cCCCCCcceeeeeeecccce
Q 025345 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~-d~P~pdW~qLtGLIHDLGKv 157 (254)
+.++.+.+.......|+..++.-+......|..|-+ .+.+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 444555566555544455554444444444444443 34467788999999999974
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=74.72 E-value=0.61 Score=41.32 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=32.3
Q ss_pred CChhhHHHHHHHHHHHHhc----------------CCC----CCcceeeeeeecccceeeccCCC
Q 025345 120 LDEPQIQHLLQSAEAIRKD----------------YPD----EDWLHLTALIHDLGKVLTLPKFG 164 (254)
Q Consensus 120 ~dlpqi~HllQTAEaIR~d----------------~P~----pdW~qLtGLIHDLGKvl~l~~fg 164 (254)
.-.|...|++-||+..+.- +.. ..|+...|++||+||.. +.|.
T Consensus 22 ~~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~fq 84 (265)
T 3sk9_A 22 PFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVFQ 84 (265)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGGC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHHH
Confidence 3478999999999886641 211 36888999999999995 5564
No 17
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=71.38 E-value=0.82 Score=39.55 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHccCCCcccCHHHHHHHhh-----hc------cCC--CCC---CCChh-hHHHHHHHHHHHHhcC-----CCCCcc
Q 025345 88 MREEYAKLDKAEMSIWECCELLN-----EV------VDE--SDP---DLDEP-QIQHLLQSAEAIRKDY-----PDEDWL 145 (254)
Q Consensus 88 ~r~~~~~~~~~~MsIwEA~e~Ln-----~l------VDe--SDP---D~dlp-qi~HllQTAEaIR~d~-----P~pdW~ 145 (254)
.-.-|..+.+.--||.+|+.+|- ++ .+. +++ ..+.. -..|.+.+|..+++-. .+++-.
T Consensus 72 aNS~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a 151 (297)
T 1vqr_A 72 ANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLL 151 (297)
T ss_dssp HTSGGGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHH
Confidence 33344456666788999987763 11 111 111 12222 3478877776555321 234566
Q ss_pred eeeeeeecccceeec
Q 025345 146 HLTALIHDLGKVLTL 160 (254)
Q Consensus 146 qLtGLIHDLGKvl~l 160 (254)
-++||+||+||+.+.
T Consensus 152 ~~aGLLHDIGkl~l~ 166 (297)
T 1vqr_A 152 VPCAMLLRLGIVIFS 166 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHH
Confidence 789999999999853
No 18
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=68.52 E-value=0.73 Score=43.93 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=27.7
Q ss_pred hhHHHHHH-H---HHHHHhcCCCC-----Ccceeeeeeeccccee
Q 025345 123 PQIQHLLQ-S---AEAIRKDYPDE-----DWLHLTALIHDLGKVL 158 (254)
Q Consensus 123 pqi~HllQ-T---AEaIR~d~P~p-----dW~qLtGLIHDLGKvl 158 (254)
..++|.|. + |.++++.||.. +=+-..||+||+||++
T Consensus 75 GLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 75 SLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhe
Confidence 35799998 5 67888999732 1456678999999997
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=50.13 E-value=2.2 Score=39.70 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=42.7
Q ss_pred HccCCCcccCHHHHHH-Hh--h---hc------cC---CC-CCCCC-hhhHHHHHHHHHHHHh---cC-----CCCCcce
Q 025345 92 YAKLDKAEMSIWECCE-LL--N---EV------VD---ES-DPDLD-EPQIQHLLQSAEAIRK---DY-----PDEDWLH 146 (254)
Q Consensus 92 ~~~~~~~~MsIwEA~e-~L--n---~l------VD---eS-DPD~d-lpqi~HllQTAEaIR~---d~-----P~pdW~q 146 (254)
|.++.+.--||.+|+- +| + ++ .+ .+ +...+ ..-..|.+.+|..++. .. ++++-.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 4455677789999987 32 1 11 12 11 11112 2356899988876552 21 3445678
Q ss_pred eeeeeecccceeec
Q 025345 147 LTALIHDLGKVLTL 160 (254)
Q Consensus 147 LtGLIHDLGKvl~l 160 (254)
++||+||+||+++.
T Consensus 310 laGLLhDIGkl~l~ 323 (457)
T 3mem_A 310 LAGLLHNFGHLVLA 323 (457)
T ss_dssp HHHHHTTTHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 99999999999864
No 20
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=48.41 E-value=4.5 Score=36.21 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=14.3
Q ss_pred Ccceeeeeeecccceee
Q 025345 143 DWLHLTALIHDLGKVLT 159 (254)
Q Consensus 143 dW~qLtGLIHDLGKvl~ 159 (254)
+++-++++.||+||.--
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 55778999999999873
No 21
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=47.96 E-value=4.9 Score=35.68 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHh----cCCCCCc----ceeeeeeecccceee
Q 025345 124 QIQHLLQSAEAIRK----DYPDEDW----LHLTALIHDLGKVLT 159 (254)
Q Consensus 124 qi~HllQTAEaIR~----d~P~pdW----~qLtGLIHDLGKvl~ 159 (254)
...|.+.+|...+. -+-++++ +-++||+||+||+..
T Consensus 167 ~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~i 210 (328)
T 3tm8_A 167 ISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHS 210 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccC
Confidence 45898888775542 2223445 445999999999863
No 22
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=43.34 E-value=4.8 Score=34.96 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCCChhhHHHHHHHHHHHHhc-CCCCCcceeeeeeecccce
Q 025345 117 DPDLDEPQIQHLLQSAEAIRKD-YPDEDWLHLTALIHDLGKV 157 (254)
Q Consensus 117 DPD~dlpqi~HllQTAEaIR~d-~P~pdW~qLtGLIHDLGKv 157 (254)
|+.-++.-+.-.+..|..|-+. +.+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 4444555555556666666543 4578889999999999996
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=40.77 E-value=8.2 Score=35.57 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHhc----CCCC-Ccceeeeeeecccceee
Q 025345 123 PQIQHLLQSAEAIRKD----YPDE-DWLHLTALIHDLGKVLT 159 (254)
Q Consensus 123 pqi~HllQTAEaIR~d----~P~p-dW~qLtGLIHDLGKvl~ 159 (254)
.-.+|.+.+|...|+- +-++ .-..++||+||+|+..+
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 4578888887766642 2122 45789999999999774
No 24
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=36.58 E-value=12 Score=30.13 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=21.2
Q ss_pred ceeeee-eecccceeeccCCCCCCCceeecCeeeeec
Q 025345 145 LHLTAL-IHDLGKVLTLPKFGGLPQWAVVGDTFPLGC 180 (254)
Q Consensus 145 ~qLtGL-IHDLGKvl~l~~fg~epQWaVvGDTfpVGC 180 (254)
|.+.+| ||.||+|+. +.+-|..-.=.||||=
T Consensus 7 ~~~g~l~v~slG~i~~-----~~~~fh~~~~IyPvGy 38 (146)
T 2wzo_A 7 IGLGGLTVYSLGEIIT-----DRPGFHDESAIYPVGY 38 (146)
T ss_dssp EEETTEEEEEEEECCC-----SSGGGBCSSCBCCEEE
T ss_pred EEECCEEEEEeeeEcc-----CCCCccCCCceeCCCE
Confidence 345566 999999993 2344655556899984
No 25
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=29.78 E-value=10 Score=35.29 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=14.3
Q ss_pred CCCcceeeeeeeccccee
Q 025345 141 DEDWLHLTALIHDLGKVL 158 (254)
Q Consensus 141 ~pdW~qLtGLIHDLGKvl 158 (254)
+++-....||+||+|+.-
T Consensus 97 ~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 97 NEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHTTTTCCS
T ss_pred CHHHHHHHHHHHhcCCCc
Confidence 346677899999999863
No 26
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=28.95 E-value=7 Score=33.62 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHhcCC---CCCcceeeeeeecccceeeccCCCCCCCceeecCeeee
Q 025345 123 PQIQHLLQSAEAIRKDYP---DEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178 (254)
Q Consensus 123 pqi~HllQTAEaIR~d~P---~pdW~qLtGLIHDLGKvl~l~~fg~epQWaVvGDTfpV 178 (254)
+-.+|.+++|-..---.+ +++-.-..+|+|||+.++ +||+.|+
T Consensus 45 SVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~-------------tGDitp~ 90 (204)
T 4dmb_A 45 SVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI-------------VGDIAPA 90 (204)
T ss_dssp BHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH-------------HCCCCGG
T ss_pred cHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh-------------cCCCccc
Confidence 455777777765442221 222344568999999876 5788665
No 27
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=28.93 E-value=29 Score=28.72 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=32.9
Q ss_pred HHHHHHHhhhccCCC-CCC-CChhhHHHHHHHHHHHHhcCCCCCc-ceeeeeeecc
Q 025345 102 IWECCELLNEVVDES-DPD-LDEPQIQHLLQSAEAIRKDYPDEDW-LHLTALIHDL 154 (254)
Q Consensus 102 IwEA~e~Ln~lVDeS-DPD-~dlpqi~HllQTAEaIR~d~P~pdW-~qLtGLIHDL 154 (254)
|.+|+++-....... +.+ ...|-|.|.+.+|+.+..+..-.|. ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 445555544443322 223 4688999999999999844311133 4458999985
No 28
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=28.27 E-value=46 Score=30.38 Aligned_cols=39 Identities=5% Similarity=0.024 Sum_probs=29.9
Q ss_pred HHHHHHHHccCCCcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHH
Q 025345 85 VKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAI 135 (254)
Q Consensus 85 v~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaI 135 (254)
.++...+|...-|.+-++.+|++.|+.|-.+ ++++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 3445566778889999999999999988542 77777765
No 29
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=26.69 E-value=39 Score=27.96 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=25.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCc-ceeeeeeecc
Q 025345 121 DEPQIQHLLQSAEAIRKDYPDEDW-LHLTALIHDL 154 (254)
Q Consensus 121 dlpqi~HllQTAEaIR~d~P~pdW-~qLtGLIHDL 154 (254)
..|-|.|.+.+|+.+..+..-.|. ...+||+||.
T Consensus 28 G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 28 GTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp CCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 478999999999999655421244 5678999985
No 30
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=25.35 E-value=14 Score=34.49 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHH-HHhcCCCCCcceeeeeee-cccce
Q 025345 123 PQIQHLLQSAEA-IRKDYPDEDWLHLTALIH-DLGKV 157 (254)
Q Consensus 123 pqi~HllQTAEa-IR~d~P~pdW~qLtGLIH-DLGKv 157 (254)
...+|+|++... |..+.|.+.++-|++|+| |+||-
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~ 302 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLET 302 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhh
Confidence 456888887544 666667778999999999 99995
No 31
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=24.84 E-value=53 Score=30.77 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHccCCCcccCHHHHHHHhhhccCC-------CCCCCChhhHHHHHHHHHHH
Q 025345 85 VKKMREEYAKLDKAEMSIWECCELLNEVVDE-------SDPDLDEPQIQHLLQSAEAI 135 (254)
Q Consensus 85 v~~~r~~~~~~~~~~MsIwEA~e~Ln~lVDe-------SDPD~dlpqi~HllQTAEaI 135 (254)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++.+|++|
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~ 500 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELI 500 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 3445567777888888999999999887432 12222234678999999887
No 32
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=24.30 E-value=11 Score=31.70 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHH-------hcC-C--CCCcceeeeeeecccceee
Q 025345 122 EPQIQHLLQSAEAIR-------KDY-P--DEDWLHLTALIHDLGKVLT 159 (254)
Q Consensus 122 lpqi~HllQTAEaIR-------~d~-P--~pdW~qLtGLIHDLGKvl~ 159 (254)
.+..+|.+++|-... ... + +++=..+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 445688888875322 222 2 3344556699999999883
No 33
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.74 E-value=9 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=11.9
Q ss_pred cceeeeeeeccccee
Q 025345 144 WLHLTALIHDLGKVL 158 (254)
Q Consensus 144 W~qLtGLIHDLGKvl 158 (254)
-..++||+||+|+--
T Consensus 88 ~~~~AaLlHDiGh~P 102 (410)
T 2q14_A 88 AVQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhccCCCc
Confidence 356789999999954
No 34
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=22.09 E-value=1.3e+02 Score=31.41 Aligned_cols=77 Identities=21% Similarity=0.414 Sum_probs=48.1
Q ss_pred HHHHHHHHHccCCCc-ccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcce-----------eeeee
Q 025345 84 FVKKMREEYAKLDKA-EMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLH-----------LTALI 151 (254)
Q Consensus 84 fv~~~r~~~~~~~~~-~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~q-----------LtGLI 151 (254)
|.+++++.|++-+|. .| +..|+.- ..|++++..+-...+ ++|++..|+--|+. |.|+
T Consensus 459 F~~~q~~~yG~~~h~Y~~------D~FnE~~--~~~~~~l~~~~~~v~--~am~~~dp~AvWv~QgW~~~~~~~~L~~v- 527 (914)
T 4a4a_A 459 FYEKQKEVFGDVTNFYGV------DPFHQGG--NTGDLDNGKIYEIIQ--NKMIEHDNDAVWVIQNWQGNPSNNKLEGL- 527 (914)
T ss_dssp HHHHHHHHHCSCCSEEEC------CTTTTSC--CCTTCCHHHHHHHHH--HHHHHHCTTCEEEEEEBTTBSCHHHHTTC-
T ss_pred HHHHHHHHhCCccccccc------CccccCC--CCCCcCHHHHHHHHH--HHHHHhCCCCEEEEcccCCCChHHHHhCC-
Confidence 566688899985553 22 2344432 235577766655544 56778889888884 4444
Q ss_pred ecccceeeccCCCC-CCCcee
Q 025345 152 HDLGKVLTLPKFGG-LPQWAV 171 (254)
Q Consensus 152 HDLGKvl~l~~fg~-epQWaV 171 (254)
-+.||+|.|.-|.+ .|||..
T Consensus 528 p~~~~mlvLDL~se~~p~w~~ 548 (914)
T 4a4a_A 528 TKKDQAMVLDLFSEVSPDWNR 548 (914)
T ss_dssp SCGGGEEEEETTTTTSCCCHH
T ss_pred CCCCCEEEEEcccccccccch
Confidence 22589999866664 678843
No 35
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=20.89 E-value=36 Score=31.93 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=33.2
Q ss_pred HHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhcCCCCCcceeeeeeecc
Q 025345 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDL 154 (254)
Q Consensus 102 IwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d~P~pdW~qLtGLIHDL 154 (254)
|.+|+++-......--.....|-|.|.+.+|+.+..-+-+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 455555544433222112347889999999999987654333 5678999985
No 36
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=20.29 E-value=1e+02 Score=25.62 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHccCC---CcccCHHHHHHHhhhccCCCCCCCChhhHHHHHHHHHHHHhc
Q 025345 81 TYDFVKKMREEYAKLD---KAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD 138 (254)
Q Consensus 81 Tvdfv~~~r~~~~~~~---~~~MsIwEA~e~Ln~lVDeSDPD~dlpqi~HllQTAEaIR~d 138 (254)
|-+=..++|++|-.-- -++.-||+||..--.++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 4445677999997644 467889999988776664433 5777777654
Done!