BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025346
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
SG+VA++GKPNVGKSTL N ++G K++ ++ +PQTTR R+ GI + Q++ DTPG +
Sbjct: 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPG-L 65
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234
K + L M + V A + + +V +VD P DE++ + K+PILLV N
Sbjct: 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 125
Query: 235 KKDLIKPGEIAKK 247
K D K E A K
Sbjct: 126 KLDAAKYPEEAMK 138
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+
Sbjct: 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLV 232
++ ++ +M K S+ + + ++ +V+ + E + L EG K P++L
Sbjct: 66 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREG------KAPVILA 119
Query: 233 LNKKD 237
+NK D
Sbjct: 120 VNKVD 124
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPG 172
K GYVA++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPG
Sbjct: 8 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 67
Query: 173 IIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
I E KK +L M++ + + AD I+ ++DA + DE + + +K P+++
Sbjct: 68 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIV 126
Query: 232 VLNKKDLIKPGE 243
V+NK D I P +
Sbjct: 127 VINKIDKIGPAK 138
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPG 172
K GYVA++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P E Q+I DTPG
Sbjct: 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68
Query: 173 IIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
I E KK +L M++ + + AD I+ ++DA + DE + + +K P+++
Sbjct: 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIV 127
Query: 232 VLNKKDLIKPGE 243
V+NK D I P +
Sbjct: 128 VINKIDKIGPAK 139
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTPG+
Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLV 232
++ ++ +M K S+ + + ++ +V+ + E + L EG K P++L
Sbjct: 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREG------KAPVILA 122
Query: 233 LNKKD 237
+NK D
Sbjct: 123 VNKVD 127
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG----- 60
Query: 178 IHMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPI 229
I + D + +R A AD I+ V+ A E + +IL ++ K P+
Sbjct: 61 IDIGDEPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKIL------YRTKKPV 114
Query: 230 LLVLNKKD 237
+L +NK D
Sbjct: 115 VLAVNKLD 122
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
++G+PNVGKS+L N +G++ IV+N TTR + + + + ++ DT G +K
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKK 236
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 19/128 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKST+ N++ G+++SIV + P TR RI Y L DT G
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG----- 80
Query: 178 IHMLDSMMMKNVRS----AGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPI 229
I + D + +R A AD I+ +V+ A E + +IL ++ K P+
Sbjct: 81 IDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL------YRTKKPV 134
Query: 230 LLVLNKKD 237
+L +NK D
Sbjct: 135 VLAVNKLD 142
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
++G+PNVGKS+L N M+G++ IV+N TTR + + + + ++ DT G+ +K
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G PNVGK+T+ N + G + V N P T + GI E + ++ D PGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
H +D ++ +N G NAD IV +VD+ + LE + K+ I+LVLNK D
Sbjct: 65 AHSIDELIARNFILDG-NADVIVDIVDSTCLMRNLFLTLELFEMEVKN---IILVLNKFD 120
Query: 238 LIK 240
L+K
Sbjct: 121 LLK 123
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
VA++G+PNVGKS+L N +IVT+ P TTR + + G Q++ DT GI E
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVL--DTAGIRE 284
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
++ + ++ R A AD +++ +DA D+ + E V H+ P++LV+NK
Sbjct: 285 TS-DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV-KHR---PLILVMNK 339
Query: 236 KDLIK 240
DL++
Sbjct: 340 IDLVE 344
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GICSGPEYQMILYDTPGIIE 175
Y+ V G+ NVGKS+ N ++GQ +SIV++ TT + + P + L DTPG+
Sbjct: 36 YIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL-- 93
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD-KLPILLVLN 234
+ L + ++ R ADC +++ D+ P D V K+ ++P ++V+N
Sbjct: 94 DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDV-----VNLFKEMEIPFVVVVN 148
Query: 235 KKDLIKPGEIAKKLE 249
K D++ GE A++L+
Sbjct: 149 KIDVL--GEKAEELK 161
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
+ ++GKPNVGKSTL N+++ + +IVT+ P TTR I + G ++++ DT G+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIV--DTAGVRS 303
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
+ +++ + ++ AD ++ ++DA + D + E + + + L+V+NK
Sbjct: 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR----YLVVINK 359
Query: 236 KDLIK 240
D+++
Sbjct: 360 VDVVE 364
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G PNVGKSTL + K I + P TTR +G ++ + DTPG++++
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY-PFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAP-ERIDEILEEGVGDHKDKLPILLVL 233
I + + + + + + I+ + D C P E + EE G+ KD LP L+V+
Sbjct: 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD-LPFLVVI 287
Query: 234 NKKDLIKPGEIAKKLE 249
NK D+ I K+LE
Sbjct: 288 NKIDVADEENI-KRLE 302
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
VA++G+PNVGKSTL N ++ ++ ++V+ P TTR + G +Y + DT G+
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY--VFVDTAGLRR 240
Query: 176 K-KIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
K ++ N R AD +V+++DA + R D+ G+ + + + + +V
Sbjct: 241 KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RXAGLXERRGRASV-VV 298
Query: 233 LNKKDLI 239
NK DL+
Sbjct: 299 FNKWDLV 305
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G+PNVGKSTL N+++ +K +IV ++ TR + L DT G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 178 IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
++ S K V I AD ++ +VD + + DE L + + K + +LV NK
Sbjct: 64 QDII-SQKXKEVTLNXIREADLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKA 120
Query: 237 DLIKPGE 243
+ ++ E
Sbjct: 121 ENLREFE 127
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179
+ GKPN GKSTL N ++GQ+ +IV++ P TTR I + L DT G+ E
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-E 296
Query: 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218
++ ++ R AD I+ L+D ER+D+ L E
Sbjct: 297 EIEHEGIRRSRMKMAEADLILYLLDL--GTERLDDELTE 333
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169
P KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVD 60
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDK 226
T G E I S IN +V V + K+ E I I L + VG K +
Sbjct: 61 TAGQDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQ 111
Query: 227 LPILLVLNKKDL 238
+PI+LV NKKDL
Sbjct: 112 IPIMLVGNKKDL 123
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169
P KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L D
Sbjct: 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVD 60
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDK 226
T G E I S IN +V V + K+ E I I L + VG K +
Sbjct: 61 TAGQDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQ 111
Query: 227 LPILLVLNKKDL 238
+PI+LV NKKDL
Sbjct: 112 IPIMLVGNKKDL 123
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
V ++G+PNVGKS+L N+++ ++ ++V + P TR G+ + +L DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 174 -IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
EKKI + V A +A+ ++ VD + D + E + + P++LV
Sbjct: 64 KWEKKIQ-------EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL--RRKGKPVILV 114
Query: 233 LNKKD 237
K D
Sbjct: 115 ATKVD 119
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
KS +A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV-NGQEYHLQLVDTAG 61
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPI 229
E I S IN +V V + K+ E I I L + VG K ++PI
Sbjct: 62 QDEYSI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPI 112
Query: 230 LLVLNKKDL 238
+LV NKKDL
Sbjct: 113 MLVGNKKDL 121
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER 211
+D + ++ G +AD ++++ D+ PE+
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVN-PEQ 98
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
+D + ++ G +AD ++++ D+ + + +LE
Sbjct: 67 YSSIDEKIARDYLLKG-DADLVILVADSVNPEQSLYLLLE 105
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 118 VAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
+A+LG +VGKS+L Q + GQ + + T +++ + +G EY + L DT G E
Sbjct: 4 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEY 62
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVL 233
I S IN +V V + K+ E I I L + VG K ++PI+LV
Sbjct: 63 SI-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG--KVQIPIMLVG 113
Query: 234 NKKDL 238
NKKDL
Sbjct: 114 NKKDL 118
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGMP 53
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ +VD + +D EI E +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL 112
Query: 224 KDKLPILLVLNKKDL 238
KLPI +V NK D+
Sbjct: 113 PAKLPITVVRNKADI 127
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGMP 56
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ +VD + +D EI E +
Sbjct: 57 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARL 115
Query: 224 KDKLPILLVLNKKDL 238
KLPI +V NK D+
Sbjct: 116 PAKLPITVVRNKADI 130
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR +L + I
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD-------------VLREHIHIDGXP 53
Query: 178 IHMLDSMMMK----NVRSAGI--------NADCIVVLVDACKAPERID--EILEEGVGDH 223
+H++D+ ++ V GI AD ++ VD + +D EI E +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFXVDGTTT-DAVDPAEIWPEFIARL 112
Query: 224 KDKLPILLVLNKKDL 238
KLPI +V NK D+
Sbjct: 113 PAKLPITVVRNKADI 127
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 62
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 63 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 114
Query: 226 KLPILLVLNKKDLIK 240
+LL LNK DL K
Sbjct: 115 ---LLLALNKMDLAK 126
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 59
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER ++ E G
Sbjct: 60 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLXEXGAN---- 111
Query: 226 KLPILLVLNKKDLIK 240
+LL LNK DL K
Sbjct: 112 ---LLLALNKXDLAK 123
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 58
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 59 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 110
Query: 226 KLPILLVLNKKDLIK 240
+LL LNK DL K
Sbjct: 111 ---LLLALNKMDLAK 122
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 22/135 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP 171
KS +A++G PNVGKST+ N + G+ + I N P T + G +G +++++ D P
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVYI-GNWPGVTVEKKEGEFEYNGEKFKVV--DLP 58
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINA--DCIVVLVDACKAPER----IDEILEEGVGDHKD 225
G+ + +D ++ R IN D +V +VDA A ER +++E G
Sbjct: 59 GVYSLTANSIDEII---ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGAN---- 110
Query: 226 KLPILLVLNKKDLIK 240
+LL LNK DL K
Sbjct: 111 ---LLLALNKMDLAK 122
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
V ++G PN GK+TL NQ+ G + V N T R GI + ++Q+ L D PG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 93 NMASPDDYEI--EEFDY--ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ 148
N P EI E+FD A ++ ++G PNVGKSTL N++ + ++ ++P
Sbjct: 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG 153
Query: 149 TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206
T + + G E + L DTPGI+ K D ++ + G D I+ L D
Sbjct: 154 ITTSQ-QWVKVGKELE--LLDTPGILWPKFE--DELVGLRLAVTGAIKDSIINLQDVA 206
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIE- 175
V ++G PN GKS+L M I P TT LG+ E + L D PGIIE
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218
Query: 176 -KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL---PILL 231
+ L ++++ ++ ++DA P + E L + VG + L P L+
Sbjct: 219 ASEGKGLGLEFLRHI----ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 274
Query: 232 VLNKKDLIK 240
LNK DL++
Sbjct: 275 ALNKVDLLE 283
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI-----LYDTPG 172
V ++G PN GKST+ N++ G++ S V +P GI G ++ + + DTPG
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQP--------GITKGIQWFSLENGVKILDTPG 153
Query: 173 IIEKKIHMLD 182
I+ K I D
Sbjct: 154 ILYKNIFSED 163
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG----- 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDA 205
I + + + + + S +AD ++ +VDA
Sbjct: 65 TISSQTSLDEQIACHYILSG--DADLLINVVDA 95
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+ ++G PN GK+TL NQ+ G + V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++LA+Q + + S + + + E+ + L DT G E
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLN 234
I ++ G++ +V V + + + I+ + L EG G K ++P++LV N
Sbjct: 87 ILPYSFII-------GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG--KTRVPVVLVGN 137
Query: 235 KKDL 238
K DL
Sbjct: 138 KADL 141
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQ---KLSIVTNK--PQTTRHRILGICSGP-EYQMI 166
+ G V V+G NVGKST N++I + K +++T P TT L + P E
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT----LDMIEIPLESGAT 215
Query: 167 LYDTPGIIE--KKIHMLDSMMMK 187
LYDTPGII + H +D+ +K
Sbjct: 216 LYDTPGIINHHQMAHFVDARDLK 238
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 16 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 75
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 76 MVSRTMGGFTINIIDTPGLVE 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154
A+ + IE F + S V VLGK VGKS+ N +IG+++ V+ +
Sbjct: 15 AATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPV 74
Query: 155 LGICSGPEYQMILYDTPGIIE 175
+ + + + + DTPG++E
Sbjct: 75 MVSRTMGGFTINIIDTPGLVE 95
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTTRHRILGI 157
FD A G+V G P+VGKSTL +++ G + + + P R++
Sbjct: 65 FDVARTGVASVGFV---GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK---- 117
Query: 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
G + QM+ D PGII+ K V + + + +++D K P +I+E
Sbjct: 118 --GAKIQML--DLPGIIDGAKD--GRGRGKQVIAVARTCNLLFIILDVNK-PLHHKQIIE 170
Query: 218 ---EGVGDHKDKLPILLVLNKKD 237
EGVG +K P +++ KK+
Sbjct: 171 KELEGVGIRLNKTPPDILIKKKE 193
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 25/148 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K S N+ + T I + + ++ D +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFS---NQYKAT------IGADFLTKEVMVDDRLVT--- 58
Query: 178 IHMLDSMMMKNVRSAGI----NADCIVVLVDACKAPERI-------DEILEEGVGDHKDK 226
+ + D+ ++ +S G+ ADC V++ D AP DE L + +
Sbjct: 59 MQIWDTAGLERFQSLGVAFYRGADCCVLVFDV-TAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 227 LPILLVLNKKDLIKPGEIAKKLEVTTCF 254
P +++ NK DL + ++A K C+
Sbjct: 118 FPFVVLGNKIDL-ENRQVATKRAQAWCY 144
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
V +LG P VGK++LA+ G Q+ + + R L + G + +++ DT
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTW----- 60
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNK 235
+ LD + G +A IV + + E E+ + H+ D +PI+LV NK
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
Query: 236 KDLIKPGEIA 245
DL + E++
Sbjct: 121 ADLARCREVS 130
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+GK VGKS+ N +IG+++ ++ ++ S + + + DTPG+IE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG- 100
Query: 178 IHMLDSMMMKNVRSAGINADCIVVL----VDACKAPERIDEILEEGVGD 222
++ M + ++S ++ V+L +DA + + +D+++ + + D
Sbjct: 101 -GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV-DNLDKLVAKAITD 147
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ ++ + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEAKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V +LG+ VGKSTLA + G + N T RI+ E +I+YD
Sbjct: 15 VMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQG 72
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 73 DAGGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 126
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 127 NKSDLARSREVS 138
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K S N+ + T I + + ++ D +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFS---NQYKAT------IGADFLTKEVMVDDRLVT--- 58
Query: 178 IHMLDSMMMKNVRSAGI----NADCIVVLVDACKAPERI-------DEILEEGVGDHKDK 226
+ + D+ + +S G+ ADC V++ D AP DE L + +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT-APNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 227 LPILLVLNKKDLIKPGEIAKKLEVTTCF 254
P +++ NK DL + ++A K C+
Sbjct: 118 FPFVVLGNKIDL-ENRQVATKRAQAWCY 144
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---RILGICSGP-EYQMILYDTPGI 173
V V+G NVGKST N+ I ++ S T TT H L + P + + LYDTPGI
Sbjct: 163 VYVVGCTNVGKSTFINRXI-KEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
Query: 174 I 174
I
Sbjct: 222 I 222
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K S N+ + T I + + ++ D +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFS---NQYKAT------IGADFLTKEVMVDDRLVT--- 58
Query: 178 IHMLDSMMMKNVRSAGI----NADCIVVLVDACKAPERI-------DEILEEGVGDHKDK 226
+ + D+ + +S G+ ADC V++ D AP DE L + +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDV-TAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 227 LPILLVLNKKDLIKPGEIAKKLEVTTCF 254
P +++ NK DL + ++A K C+
Sbjct: 118 FPFVVLGNKIDL-ENRQVATKRAQAWCY 144
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQ---MIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V ++G+ VGKSTLA + G + N T RI+ E +I+YD
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM--VDKEEVTLIVYDIWEQG 62
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 63 DAGGWLQDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 117 NKSDLARSREVS 128
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE- 175
+ ++G PN GK+TL N + V N P T + G E+ + + D PG+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 176 ----KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLP 228
+ I + + ++V + DCI+ ++DAC + ++ E G P
Sbjct: 62 VANAEGISQDEQIAAQSV--IDLEYDCIINVIDACHLERHLYLTSQLFELGK-------P 112
Query: 229 ILLVLNKKDL 238
+++ LN D+
Sbjct: 113 VVVALNMMDI 122
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 25/148 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K S N+ + T I + + ++ D +
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFS---NQYKAT------IGADFLTKEVMVDDRLVT--- 58
Query: 178 IHMLDSMMMKNVRSAGI----NADCIVVLVDACKAPERI-------DEILEEGVGDHKDK 226
+ + D+ + +S G+ ADC V++ D AP DE L + +
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDV-TAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 227 LPILLVLNKKDLIKPGEIAKKLEVTTCF 254
P +++ NK D + ++A K C+
Sbjct: 118 FPFVVLGNKIDF-ENRQVATKRAQAWCY 144
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGIC-SGPEYQMILYDTPGIIE 175
+ V GK VGKS+ N +IG++ +V+ P Q+ R + + S + + + DTPG+IE
Sbjct: 42 ILVXGKGGVGKSSTVNSIIGER--VVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIE 99
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPAEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P + R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMI--LYDTPG 172
+A G+ N GKST N + QK L+ + P T+H I GP + + L D PG
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH-INYFSVGPAAEPVAHLVDLPG 88
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PN GK++L N + G V N P R G+ + + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-----SGPEYQ 164
P + + ++GK GKS N ++G+K+ T I C S E +
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVF----HSGTAAKSITKKCEKRSSSWKETE 79
Query: 165 MILYDTPGIIEKKI 178
+++ DTPGI + ++
Sbjct: 80 LVVVDTPGIFDTEV 93
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+K G + LG N GK+TL + + +L+ + Q T H + + +D G
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGG 76
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE-----GVGDHKDKL 227
I+ + D N IV LVDA PER DE E + + KD +
Sbjct: 77 HIQARRLWKDYFPEVN---------GIVFLVDAAD-PERFDEARVELDALFNIAELKD-V 125
Query: 228 PILLVLNKKD 237
P +++ NK D
Sbjct: 126 PFVILGNKID 135
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICSGPEYQMILYDTPGII 174
V ++G+ VGKSTLA G + N T RI+ E +++YD
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM--VDKEEVTLVVYDIWEQG 83
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVL 233
+ + D + +A IV V ++ ++ E +L G LP++LV
Sbjct: 84 DAGGWLRDHCLQTG------DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 234 NKKDLIKPGEIA 245
NK DL + E++
Sbjct: 138 NKSDLARSREVS 149
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-----IEK 176
G+ NVGKSTL ++ G+K+ +P TR +I+ I +++I D PG + K
Sbjct: 8 GRSNVGKSTLIYRLTGKKVR-RGKRPGVTR-KIIEI-EWKNHKII--DXPGFGFXXGLPK 62
Query: 177 KIH-MLDSMMMKNVRSAGINADCIVVLVDACKAPE 210
++ + ++ + N D V++VD APE
Sbjct: 63 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPE 97
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 24/140 (17%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 77
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 78 GHIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 127
Query: 228 PILLVLNKKDLIKPGEIAKK 247
PIL++ NK D +P I+++
Sbjct: 128 PILILGNKID--RPEAISEE 145
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158
V ++G PNVGKSTL N + + ++ N P T + +G+
Sbjct: 4 VGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVV 43
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158
V ++G PNVGKSTL N + + ++ N P T + +G+
Sbjct: 4 VGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVV 43
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G P GK++L N + G V N P T R G+ + + + D PGI
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYSMS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI---DEILEEGVGDHKDKLPILLVLN 234
+ + + ++ + AD I+ +VDA + +++E G+ P+ + LN
Sbjct: 64 PYSPEEKVARDYLLSQ-RADSILNVVDATNLERNLYLTTQLIETGI-------PVTIALN 115
Query: 235 KKDLI 239
D++
Sbjct: 116 MIDVL 120
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMIL 167
+P+ K+ + + G PNVGKS+ N ++ + V + TT++ +G +YQ+I
Sbjct: 26 NPHKKT--IILSGAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQII- 81
Query: 168 YDTPGIIEKKIHMLDSMMMKNVRS-AGINADCIVVLVD 204
DTPG++++ +++ M + + A IN I+ ++D
Sbjct: 82 -DTPGLLDRAFENRNTIEMTTITALAHING-VILFIID 117
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 21 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 74
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 75 GHIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 124
Query: 228 PILLVLNKKD 237
PIL++ NK D
Sbjct: 125 PILILGNKID 134
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 10 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY- 68
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVD---ACKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + N +G + + + E ++IL V +DK+P+L+V N
Sbjct: 69 -----AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVVGN 121
Query: 235 KKDL 238
K DL
Sbjct: 122 KSDL 125
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTP 171
K+G + LG N GK+TL + + +L + T P + I G+ +D
Sbjct: 15 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT------FTTFDLG 68
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----L 227
G I+ + + KN A IN IV LVD C ER+ E EE D+ +
Sbjct: 69 GGIQAR------RVWKNYLPA-ING--IVFLVD-CADHERLLESKEELDSLMTDETIANV 118
Query: 228 PILLVLNKKD 237
PIL++ NK D
Sbjct: 119 PILILGNKID 128
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L Q + + + +R + G E Q+ + DT G+ +
Sbjct: 6 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVD---ACKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + N +G + + + E ++IL V +DK+P+L+V N
Sbjct: 65 -----AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILR--VKAEEDKIPLLVVGN 117
Query: 235 KKDL 238
K DL
Sbjct: 118 KSDL 121
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G + LG N GK+TL + + +L+ + Q T H + + +D G I+
Sbjct: 2 GKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQ 57
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE-----GVGDHKDKLPIL 230
+ D N IV LVDA PER DE E + + KD +P +
Sbjct: 58 ARRLWKDYFPEVN---------GIVFLVDAAD-PERFDEARVELDALFNIAELKD-VPFV 106
Query: 231 LVLNKKD 237
++ NK D
Sbjct: 107 ILGNKID 113
>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp
Length = 366
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 186
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGTDREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 187 KNVRSAGINADCIVVLVDACKAPE 210
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Glucose
pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
With Nadp And Xylose
Length = 366
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML---DSMMM 186
T+ N + G IV K + + G ++ ++ ++ G++E+ H D +M
Sbjct: 33 TIYNGICGADREIVNGKLTLST-----LPKGKDFLVLGHEAIGVVEESYHGFSQGDLVMP 87
Query: 187 KNVRSAGINADCIVVLVDACKAPE 210
N R GI +C+V D C+ E
Sbjct: 88 VNRRGCGICRNCLVGRPDFCETGE 111
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNK 235
S M G C V ++ K+ E I + E+ V D D +P++LV NK
Sbjct: 65 -----SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117
Query: 236 KDL 238
DL
Sbjct: 118 CDL 120
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G P VGKS L Q+I + +R + G + + DT G E
Sbjct: 6 LVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY- 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVLNK 235
S M G C V ++ K+ E I + E+ V D D +P++LV NK
Sbjct: 65 -----SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNK 117
Query: 236 KDL 238
DL
Sbjct: 118 CDL 120
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158
+ V+GKPNVGKST + + I N P TT +G+
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEI-ANYPFTTIEANVGVT 42
>pdb|3QML|C Chain C, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|D Chain D, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 315
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 104 EFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT 150
EF S PN KS +A L N +N +I + LSI+ P T+
Sbjct: 106 EFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS 152
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 61 IR-------PYWRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 112
Query: 234 NKKDLIKPG---EIAKKLEVTT 252
NK+DL+ EIA+ L + T
Sbjct: 113 NKQDLLTAAPASEIAEGLNLHT 134
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G+ + +
Sbjct: 7 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGGLRKIR 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
+ RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 63 PYW---------RSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 112
Query: 234 NKKDLIKPG---EIAKKLEVTT 252
NK+DL+ EIA+ L + T
Sbjct: 113 NKQDLLTAAPASEIAEGLNLHT 134
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMI----GQKLSIVTNK 146
K +A +G PN GKS L N +I G LS +K
Sbjct: 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK 161
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMI----GQKLSIVTNK 146
K +A +G PN GKS L N +I G LS +K
Sbjct: 122 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK 158
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 115 SGYVAVL-GKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152
+G +++ G+ VGKS+L N ++G + I+TN H
Sbjct: 159 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNTAARLYH 197
>pdb|2JXM|B Chain B, Ensemble Of Twenty Structures Of The Prochlorothrix
Hollandica Plastocyanin- Cytochrome F Complex
Length = 249
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 192 AGINADCIVVLVDACK--APERIDEILEEGVGD 222
+G+N +++L + K PER+DE L E VGD
Sbjct: 67 SGLNVGAVLMLPEGFKLAPPERVDEELMEEVGD 99
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 20 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 73
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 74 IR-------PYWRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 125
Query: 234 NKKDLIKPG---EIAKKLEVTT 252
NK+DL+ EIA+ L + T
Sbjct: 126 NKQDLLTAAPASEIAEGLNLHT 147
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T T I + S +++ ++D G ++K
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQS-QGFKLNVWDIGG--QRK 72
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK----LPILLVL 233
I RS N D ++ ++D+ +R +E +E +++ +P+L+
Sbjct: 73 IRPY-------WRSYFENTDILIYVIDSADR-KRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 234 NKKDLIKPG---EIAKKLEVTT 252
NK+DL+ EIA+ L + T
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHT 146
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH-RILGICSGPEYQMILY 168
P+ VA G+ N GKS+ N + QK L+ + P T+ + + G L
Sbjct: 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR----LV 77
Query: 169 DTPGIIEKKIHMLDSMMMKNVRSAG------INADCIVVLVDACKAPERIDEILEEGVGD 222
D PG ++ + M K R+ G + +VVL+D + +D+ + E D
Sbjct: 78 DLPGYGYAEVP--EEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD 135
Query: 223 HKDKLPILLVLNKKDLIKPG 242
+ +L++L K D + G
Sbjct: 136 S--NIAVLVLLTKADKLASG 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,046,402
Number of Sequences: 62578
Number of extensions: 260166
Number of successful extensions: 859
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 96
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)