Query 025346
Match_columns 254
No_of_seqs 315 out of 2126
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1084 Predicted GTPase [Gene 100.0 1.5E-31 3.2E-36 225.5 8.8 225 10-250 71-304 (346)
2 KOG1490 GTP-binding protein CR 99.9 2.8E-27 6.2E-32 208.2 0.8 223 11-248 72-303 (620)
3 COG0486 ThdF Predicted GTPase 99.9 5.8E-24 1.3E-28 187.7 10.5 222 11-243 104-341 (454)
4 COG1159 Era GTPase [General fu 99.9 6.9E-21 1.5E-25 159.7 15.2 128 113-243 4-131 (298)
5 COG1160 Predicted GTPases [Gen 99.8 1.7E-20 3.7E-25 165.4 13.9 126 116-243 4-129 (444)
6 TIGR00450 mnmE_trmE_thdF tRNA 99.8 6.3E-21 1.4E-25 172.7 11.3 216 11-241 94-325 (442)
7 PRK05291 trmE tRNA modificatio 99.8 1.2E-20 2.6E-25 171.6 10.0 220 11-243 102-338 (449)
8 TIGR00436 era GTP-binding prot 99.8 2.4E-19 5.2E-24 153.2 16.0 128 117-248 2-129 (270)
9 PRK00089 era GTPase Era; Revie 99.8 1.8E-18 4E-23 149.4 17.0 135 114-251 4-139 (292)
10 KOG0084 GTPase Rab1/YPT1, smal 99.8 5E-19 1.1E-23 139.4 12.0 122 115-246 9-134 (205)
11 PRK15494 era GTPase Era; Provi 99.8 2.8E-18 6E-23 151.0 15.9 126 113-241 50-175 (339)
12 PF01926 MMR_HSR1: 50S ribosom 99.8 7.1E-18 1.5E-22 125.9 14.1 116 117-235 1-116 (116)
13 cd01897 NOG NOG1 is a nucleola 99.8 7.4E-18 1.6E-22 133.4 15.0 129 116-246 1-133 (168)
14 PF02421 FeoB_N: Ferrous iron 99.8 4.8E-19 1E-23 138.1 7.9 120 117-242 2-121 (156)
15 cd04163 Era Era subfamily. Er 99.8 2.6E-17 5.6E-22 128.9 16.1 133 115-250 3-136 (168)
16 cd04120 Rab12 Rab12 subfamily. 99.8 1.5E-17 3.3E-22 136.1 14.4 117 117-244 2-123 (202)
17 cd01894 EngA1 EngA1 subfamily. 99.8 1.8E-17 3.8E-22 129.2 13.9 123 119-244 1-123 (157)
18 KOG1191 Mitochondrial GTPase [ 99.8 1.8E-18 3.9E-23 153.0 8.9 224 11-241 154-404 (531)
19 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.8E-17 3.9E-22 130.4 13.4 126 112-248 19-150 (221)
20 PRK03003 GTP-binding protein D 99.8 2.4E-17 5.2E-22 151.2 16.2 124 115-241 38-161 (472)
21 KOG0092 GTPase Rab5/YPT51 and 99.8 5.7E-18 1.2E-22 133.0 9.7 122 114-245 4-129 (200)
22 cd01898 Obg Obg subfamily. Th 99.7 1.7E-17 3.6E-22 131.4 12.0 129 117-248 2-136 (170)
23 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.6E-17 1.2E-21 126.3 14.7 123 116-243 2-124 (157)
24 KOG0098 GTPase Rab2, small G p 99.7 2.1E-17 4.5E-22 129.1 11.9 124 115-247 6-132 (216)
25 TIGR03156 GTP_HflX GTP-binding 99.7 4.1E-17 8.9E-22 143.9 15.1 130 114-245 188-320 (351)
26 cd01895 EngA2 EngA2 subfamily. 99.7 1E-16 2.2E-21 126.7 15.5 125 115-241 2-128 (174)
27 cd01861 Rab6 Rab6 subfamily. 99.7 6.8E-17 1.5E-21 126.8 14.5 115 117-241 2-120 (161)
28 cd04122 Rab14 Rab14 subfamily. 99.7 4.1E-17 8.8E-22 129.1 13.2 117 116-243 3-124 (166)
29 COG0218 Predicted GTPase [Gene 99.7 1.4E-16 3.1E-21 127.1 16.0 136 111-251 20-160 (200)
30 cd01874 Cdc42 Cdc42 subfamily. 99.7 4.5E-17 9.7E-22 130.4 13.3 115 116-242 2-121 (175)
31 TIGR03594 GTPase_EngA ribosome 99.7 3.7E-17 7.9E-22 148.5 14.4 124 117-243 1-124 (429)
32 cd01864 Rab19 Rab19 subfamily. 99.7 8.6E-17 1.9E-21 127.1 14.6 118 115-242 3-124 (165)
33 cd04142 RRP22 RRP22 subfamily. 99.7 6E-17 1.3E-21 132.2 13.6 123 117-241 2-131 (198)
34 PRK12299 obgE GTPase CgtA; Rev 99.7 6.6E-17 1.4E-21 141.6 14.7 126 116-244 159-289 (335)
35 TIGR03598 GTPase_YsxC ribosome 99.7 2.5E-16 5.3E-21 126.5 16.7 134 111-249 14-152 (179)
36 PRK00093 GTP-binding protein D 99.7 9.3E-17 2E-21 146.1 15.3 122 116-240 2-123 (435)
37 cd01865 Rab3 Rab3 subfamily. 99.7 1.1E-16 2.4E-21 126.6 13.8 116 116-242 2-122 (165)
38 cd04136 Rap_like Rap-like subf 99.7 7.2E-17 1.6E-21 126.9 12.5 116 116-242 2-122 (163)
39 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.7E-16 3.7E-21 126.0 14.4 117 117-246 1-120 (167)
40 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.1E-16 2.5E-21 125.8 13.2 117 115-242 2-123 (164)
41 cd01867 Rab8_Rab10_Rab13_like 99.7 1.4E-16 3E-21 126.3 13.7 118 115-242 3-124 (167)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.6E-16 3.4E-21 125.6 13.9 117 116-242 3-123 (166)
43 cd01868 Rab11_like Rab11-like. 99.7 1.8E-16 4E-21 125.0 14.2 117 116-242 4-124 (165)
44 cd01866 Rab2 Rab2 subfamily. 99.7 1.5E-16 3.2E-21 126.3 13.7 117 116-242 5-125 (168)
45 PRK12298 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.4E-21 142.8 14.3 130 117-249 161-298 (390)
46 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.2E-16 2.6E-21 127.6 13.1 118 116-244 3-125 (172)
47 TIGR03594 GTPase_EngA ribosome 99.7 2.1E-16 4.4E-21 143.6 16.2 131 114-246 171-304 (429)
48 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.5E-16 3.3E-21 125.7 13.4 118 117-243 1-124 (167)
49 cd04149 Arf6 Arf6 subfamily. 99.7 2.9E-16 6.3E-21 124.9 15.0 114 114-240 8-124 (168)
50 cd01875 RhoG RhoG subfamily. 99.7 1.4E-16 3E-21 129.4 13.3 115 115-241 3-122 (191)
51 cd04144 Ras2 Ras2 subfamily. 99.7 7E-17 1.5E-21 130.9 11.6 116 117-243 1-123 (190)
52 cd01878 HflX HflX subfamily. 99.7 2.4E-16 5.1E-21 129.1 14.8 129 114-245 40-172 (204)
53 cd04140 ARHI_like ARHI subfami 99.7 1.2E-16 2.5E-21 126.5 12.5 117 116-243 2-125 (165)
54 cd04121 Rab40 Rab40 subfamily. 99.7 2.1E-16 4.6E-21 128.0 14.2 117 115-243 6-127 (189)
55 cd04134 Rho3 Rho3 subfamily. 99.7 9.5E-17 2.1E-21 130.0 12.2 116 116-243 1-121 (189)
56 cd04112 Rab26 Rab26 subfamily. 99.7 1.8E-16 3.8E-21 128.6 13.8 115 117-241 2-121 (191)
57 KOG0078 GTP-binding protein SE 99.7 1.3E-16 2.8E-21 127.5 12.6 125 111-246 8-137 (207)
58 cd04125 RabA_like RabA-like su 99.7 1.7E-16 3.7E-21 128.3 13.6 117 116-242 1-121 (188)
59 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.5E-16 3.3E-21 130.0 13.3 116 117-243 2-146 (202)
60 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.9E-16 4.2E-21 125.4 13.3 116 118-246 2-119 (164)
61 cd04119 RJL RJL (RabJ-Like) su 99.7 2E-16 4.3E-21 124.6 13.4 114 117-240 2-124 (168)
62 cd04117 Rab15 Rab15 subfamily. 99.7 2.6E-16 5.7E-21 124.1 14.0 117 117-243 2-122 (161)
63 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.9E-16 4.1E-21 124.0 13.1 115 116-241 2-121 (162)
64 PRK09518 bifunctional cytidyla 99.7 2.5E-16 5.5E-21 150.9 16.6 124 115-241 275-398 (712)
65 PRK12296 obgE GTPase CgtA; Rev 99.7 1.8E-16 4E-21 144.2 14.7 128 116-246 160-304 (500)
66 cd04171 SelB SelB subfamily. 99.7 4.6E-16 1E-20 122.1 15.1 115 117-242 2-120 (164)
67 cd04113 Rab4 Rab4 subfamily. 99.7 2.8E-16 6E-21 123.5 13.8 116 117-242 2-121 (161)
68 cd04175 Rap1 Rap1 subgroup. T 99.7 1.5E-16 3.2E-21 125.5 12.2 115 116-241 2-121 (164)
69 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.4E-16 3E-21 128.4 12.2 115 114-240 4-123 (182)
70 TIGR02729 Obg_CgtA Obg family 99.7 1.7E-16 3.6E-21 138.9 13.6 131 116-249 158-296 (329)
71 PRK00093 GTP-binding protein D 99.7 4.8E-16 1.1E-20 141.4 17.2 132 114-247 172-305 (435)
72 smart00175 RAB Rab subfamily o 99.7 3.4E-16 7.4E-21 123.0 14.1 115 117-241 2-120 (164)
73 smart00173 RAS Ras subfamily o 99.7 1.6E-16 3.4E-21 125.2 12.2 115 117-242 2-121 (164)
74 cd04154 Arl2 Arl2 subfamily. 99.7 4.5E-16 9.8E-21 124.1 14.9 117 113-242 12-131 (173)
75 cd04157 Arl6 Arl6 subfamily. 99.7 3.2E-16 6.8E-21 123.0 13.8 114 117-241 1-119 (162)
76 cd01893 Miro1 Miro1 subfamily. 99.7 1.9E-16 4.2E-21 125.4 12.6 116 117-243 2-120 (166)
77 cd04131 Rnd Rnd subfamily. Th 99.7 1.4E-16 3.1E-21 127.9 11.8 113 116-240 2-119 (178)
78 cd04158 ARD1 ARD1 subfamily. 99.7 3.4E-16 7.4E-21 124.4 13.9 112 117-241 1-115 (169)
79 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 2.4E-16 5.2E-21 130.7 13.4 115 116-241 2-120 (222)
80 cd04176 Rap2 Rap2 subgroup. T 99.7 2E-16 4.3E-21 124.6 12.3 115 116-241 2-121 (163)
81 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 3.4E-16 7.4E-21 124.7 13.6 115 117-242 2-122 (170)
82 PLN00223 ADP-ribosylation fact 99.7 5.2E-16 1.1E-20 124.9 14.8 118 114-244 16-136 (181)
83 cd04133 Rop_like Rop subfamily 99.7 1.7E-16 3.7E-21 127.2 11.9 114 116-241 2-120 (176)
84 PRK03003 GTP-binding protein D 99.7 3.4E-16 7.4E-21 143.7 15.5 127 114-242 210-338 (472)
85 smart00177 ARF ARF-like small 99.7 4.5E-16 9.7E-21 124.6 14.3 115 114-241 12-129 (175)
86 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 5.3E-16 1.1E-20 126.8 14.9 113 117-240 2-124 (201)
87 smart00178 SAR Sar1p-like memb 99.7 5.2E-16 1.1E-20 125.2 14.6 115 113-240 15-132 (184)
88 smart00174 RHO Rho (Ras homolo 99.7 1.6E-16 3.5E-21 126.4 11.5 112 118-241 1-117 (174)
89 PTZ00369 Ras-like protein; Pro 99.7 2.9E-16 6.3E-21 127.1 13.1 117 115-242 5-126 (189)
90 cd04109 Rab28 Rab28 subfamily. 99.7 4.4E-16 9.5E-21 128.7 14.4 115 117-242 2-125 (215)
91 cd04127 Rab27A Rab27a subfamil 99.7 4.8E-16 1E-20 124.4 14.1 118 115-242 4-136 (180)
92 cd04132 Rho4_like Rho4-like su 99.7 4.5E-16 9.8E-21 125.5 14.0 113 117-241 2-120 (187)
93 cd01860 Rab5_related Rab5-rela 99.7 8.4E-16 1.8E-20 120.8 15.2 116 116-240 2-120 (163)
94 cd01881 Obg_like The Obg-like 99.7 1.1E-16 2.4E-21 127.3 10.2 125 120-247 1-141 (176)
95 PRK11058 GTPase HflX; Provisio 99.7 2.9E-16 6.3E-21 141.7 14.0 125 115-241 197-324 (426)
96 COG1160 Predicted GTPases [Gen 99.7 1.9E-16 4.2E-21 139.9 12.5 126 114-241 177-304 (444)
97 KOG0087 GTPase Rab11/YPT3, sma 99.7 9.1E-17 2E-21 128.0 9.2 122 115-245 14-138 (222)
98 cd04150 Arf1_5_like Arf1-Arf5- 99.7 5.5E-16 1.2E-20 122.1 13.7 112 117-241 2-116 (159)
99 cd00154 Rab Rab family. Rab G 99.7 6.8E-16 1.5E-20 119.9 14.1 113 117-239 2-118 (159)
100 cd01879 FeoB Ferrous iron tran 99.7 2.7E-16 5.9E-21 122.8 11.8 119 120-244 1-119 (158)
101 cd04124 RabL2 RabL2 subfamily. 99.7 7.8E-16 1.7E-20 121.3 14.4 113 117-240 2-118 (161)
102 cd01871 Rac1_like Rac1-like su 99.7 4.3E-16 9.4E-21 124.6 13.0 113 116-240 2-119 (174)
103 cd04115 Rab33B_Rab33A Rab33B/R 99.7 7.1E-16 1.5E-20 122.6 14.2 120 115-243 2-126 (170)
104 cd04101 RabL4 RabL4 (Rab-like4 99.7 9.8E-16 2.1E-20 120.6 14.6 117 117-243 2-124 (164)
105 PLN03110 Rab GTPase; Provision 99.7 8.6E-16 1.9E-20 127.1 14.9 119 115-243 12-134 (216)
106 cd04126 Rab20 Rab20 subfamily. 99.7 4.2E-16 9.2E-21 129.1 12.9 111 117-240 2-114 (220)
107 PLN03118 Rab family protein; P 99.7 6.4E-16 1.4E-20 127.3 13.9 123 112-243 11-137 (211)
108 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 4.7E-16 1E-20 129.7 13.1 115 114-240 12-131 (232)
109 cd04146 RERG_RasL11_like RERG/ 99.7 1.9E-16 4.2E-21 125.1 10.3 116 117-242 1-122 (165)
110 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1E-15 2.3E-20 120.0 14.4 112 117-240 1-115 (160)
111 PLN03071 GTP-binding nuclear p 99.7 7.3E-16 1.6E-20 127.8 13.9 118 113-240 11-131 (219)
112 PRK12297 obgE GTPase CgtA; Rev 99.7 7.3E-16 1.6E-20 138.4 14.9 122 117-241 160-289 (424)
113 cd00877 Ran Ran (Ras-related n 99.7 6.1E-16 1.3E-20 122.7 12.9 113 117-241 2-119 (166)
114 cd04106 Rab23_lke Rab23-like s 99.7 9.5E-16 2.1E-20 120.4 13.5 116 117-243 2-123 (162)
115 cd04123 Rab21 Rab21 subfamily. 99.7 1.2E-15 2.6E-20 119.4 14.0 116 117-242 2-121 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.5E-15 3.3E-20 121.3 14.8 113 115-240 15-130 (174)
117 PTZ00133 ADP-ribosylation fact 99.7 1.2E-15 2.7E-20 122.8 14.3 115 114-241 16-133 (182)
118 cd00879 Sar1 Sar1 subfamily. 99.7 1.9E-15 4.1E-20 122.2 15.1 116 113-241 17-135 (190)
119 cd04116 Rab9 Rab9 subfamily. 99.7 1.5E-15 3.3E-20 120.4 14.2 116 115-240 5-128 (170)
120 KOG0095 GTPase Rab30, small G 99.7 9.1E-16 2E-20 115.7 11.9 123 116-248 8-134 (213)
121 cd04114 Rab30 Rab30 subfamily. 99.7 1.7E-15 3.6E-20 119.9 14.2 119 115-243 7-129 (169)
122 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.1E-15 4.6E-20 121.5 14.8 115 115-240 3-123 (183)
123 cd04110 Rab35 Rab35 subfamily. 99.7 1.5E-15 3.3E-20 124.0 14.0 117 115-242 6-126 (199)
124 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.7E-15 3.8E-20 122.0 14.0 111 117-239 2-117 (182)
125 cd04135 Tc10 TC10 subfamily. 99.7 7.7E-16 1.7E-20 122.5 11.8 114 117-241 2-119 (174)
126 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.6E-15 3.4E-20 123.6 13.9 131 117-247 2-137 (196)
127 cd04143 Rhes_like Rhes_like su 99.7 7.3E-16 1.6E-20 129.9 12.2 113 117-240 2-127 (247)
128 KOG1423 Ras-like GTPase ERA [C 99.7 4.6E-16 1E-20 130.5 10.7 133 110-243 67-202 (379)
129 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2E-15 4.4E-20 118.2 13.8 113 117-242 1-116 (158)
130 cd04118 Rab24 Rab24 subfamily. 99.7 1.3E-15 2.8E-20 123.5 12.8 113 117-240 2-119 (193)
131 cd04151 Arl1 Arl1 subfamily. 99.7 1.9E-15 4.1E-20 118.6 13.4 112 117-241 1-115 (158)
132 cd01863 Rab18 Rab18 subfamily. 99.7 2.3E-15 5E-20 118.1 13.8 115 117-240 2-120 (161)
133 PRK09518 bifunctional cytidyla 99.7 1.9E-15 4.2E-20 144.9 15.9 128 114-243 449-578 (712)
134 cd00881 GTP_translation_factor 99.7 1.2E-15 2.7E-20 122.5 12.4 118 117-245 1-133 (189)
135 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.9E-15 8.5E-20 117.5 15.0 113 116-241 1-117 (168)
136 cd01870 RhoA_like RhoA-like su 99.7 1.2E-15 2.6E-20 121.5 12.0 116 116-242 2-121 (175)
137 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.3E-15 2.9E-20 121.4 11.8 113 117-241 2-119 (173)
138 cd04111 Rab39 Rab39 subfamily. 99.7 2.3E-15 4.9E-20 124.1 13.3 117 116-242 3-125 (211)
139 cd00157 Rho Rho (Ras homology) 99.7 1.1E-15 2.5E-20 120.9 11.1 116 117-243 2-121 (171)
140 cd01862 Rab7 Rab7 subfamily. 99.7 7.2E-15 1.6E-19 116.4 15.7 114 117-240 2-123 (172)
141 PRK04213 GTP-binding protein; 99.7 1.9E-15 4.1E-20 123.4 12.7 122 114-242 8-146 (201)
142 PRK00454 engB GTP-binding prot 99.7 7.7E-15 1.7E-19 119.0 16.1 130 112-246 21-155 (196)
143 cd00876 Ras Ras family. The R 99.6 2.6E-15 5.7E-20 117.2 12.7 114 117-241 1-119 (160)
144 cd04159 Arl10_like Arl10-like 99.6 5.3E-15 1.1E-19 114.9 14.3 116 118-245 2-120 (159)
145 KOG0394 Ras-related GTPase [Ge 99.6 8.5E-16 1.8E-20 119.9 9.4 122 113-246 7-140 (210)
146 PLN00023 GTP-binding protein; 99.6 3.4E-15 7.5E-20 128.6 14.2 120 111-241 17-166 (334)
147 cd01891 TypA_BipA TypA (tyrosi 99.6 4.1E-15 9E-20 120.9 13.8 114 116-241 3-132 (194)
148 PF00071 Ras: Ras family; Int 99.6 1.3E-15 2.8E-20 119.7 10.5 117 117-244 1-122 (162)
149 cd04105 SR_beta Signal recogni 99.6 3.4E-15 7.5E-20 122.3 13.2 117 116-243 1-126 (203)
150 KOG0080 GTPase Rab18, small G 99.6 1.4E-15 3E-20 116.1 9.7 124 114-246 10-137 (209)
151 PLN03108 Rab family protein; P 99.6 5.3E-15 1.2E-19 121.8 14.1 118 115-242 6-127 (210)
152 cd04148 RGK RGK subfamily. Th 99.6 3.6E-15 7.7E-20 123.8 12.8 116 117-244 2-124 (221)
153 cd04103 Centaurin_gamma Centau 99.6 1.9E-15 4.2E-20 119.0 10.6 107 117-239 2-112 (158)
154 cd04177 RSR1 RSR1 subgroup. R 99.6 4E-15 8.7E-20 118.0 12.4 116 116-242 2-122 (168)
155 cd04147 Ras_dva Ras-dva subfam 99.6 3E-15 6.4E-20 122.2 12.0 113 117-240 1-118 (198)
156 KOG0093 GTPase Rab3, small G p 99.6 4.3E-15 9.2E-20 111.8 11.6 121 115-246 21-146 (193)
157 cd01889 SelB_euk SelB subfamil 99.6 7E-15 1.5E-19 119.3 14.0 116 117-243 2-137 (192)
158 TIGR00231 small_GTP small GTP- 99.6 6.5E-15 1.4E-19 113.8 13.1 117 116-242 2-124 (161)
159 PF08477 Miro: Miro-like prote 99.6 1.9E-15 4.1E-20 112.9 9.6 111 117-237 1-119 (119)
160 cd04139 RalA_RalB RalA/RalB su 99.6 8.4E-15 1.8E-19 114.9 13.8 113 117-240 2-119 (164)
161 cd01892 Miro2 Miro2 subfamily. 99.6 4.1E-15 8.9E-20 118.3 12.1 117 114-242 3-124 (169)
162 cd04155 Arl3 Arl3 subfamily. 99.6 1.5E-14 3.3E-19 114.9 14.8 121 113-246 12-135 (173)
163 cd01890 LepA LepA subfamily. 99.6 1E-14 2.2E-19 116.6 12.5 114 116-241 1-134 (179)
164 cd00880 Era_like Era (E. coli 99.6 1.3E-14 2.7E-19 112.3 12.6 124 120-247 1-125 (163)
165 smart00176 RAN Ran (Ras-relate 99.6 9.3E-15 2E-19 119.4 12.1 108 121-240 1-113 (200)
166 cd04137 RheB Rheb (Ras Homolog 99.6 9.5E-15 2.1E-19 117.0 11.8 116 116-242 2-122 (180)
167 KOG0079 GTP-binding protein H- 99.6 6.7E-15 1.4E-19 110.9 10.0 117 116-244 9-130 (198)
168 cd01853 Toc34_like Toc34-like 99.6 2.5E-14 5.4E-19 120.5 14.7 133 111-243 27-166 (249)
169 PF00025 Arf: ADP-ribosylation 99.6 1.1E-14 2.3E-19 116.7 11.9 121 113-246 12-135 (175)
170 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.3E-14 2.7E-19 119.4 12.6 114 117-240 1-144 (208)
171 cd01896 DRG The developmentall 99.6 2.4E-14 5.3E-19 119.7 14.0 90 117-209 2-91 (233)
172 KOG0086 GTPase Rab4, small G p 99.6 1.1E-14 2.3E-19 110.4 10.5 119 116-245 10-133 (214)
173 PRK09554 feoB ferrous iron tra 99.6 2.4E-14 5.1E-19 137.5 14.9 124 115-244 3-130 (772)
174 PF00009 GTP_EFTU: Elongation 99.6 2.4E-14 5.2E-19 115.9 12.3 122 115-248 3-143 (188)
175 cd01884 EF_Tu EF-Tu subfamily. 99.6 5.8E-14 1.3E-18 114.3 14.5 117 116-243 3-135 (195)
176 cd04168 TetM_like Tet(M)-like 99.6 4.2E-14 9.2E-19 118.5 13.0 114 117-241 1-131 (237)
177 TIGR02528 EutP ethanolamine ut 99.6 2.6E-14 5.6E-19 110.0 10.8 102 117-241 2-103 (142)
178 cd01873 RhoBTB RhoBTB subfamil 99.6 3.4E-14 7.4E-19 115.7 11.5 113 116-240 3-134 (195)
179 cd01850 CDC_Septin CDC/Septin. 99.6 2.4E-13 5.2E-18 116.4 17.2 131 116-249 5-166 (276)
180 KOG0088 GTPase Rab21, small G 99.6 1.6E-15 3.5E-20 115.5 3.4 122 114-247 12-139 (218)
181 COG3596 Predicted GTPase [Gene 99.5 1.4E-14 3E-19 120.5 8.1 127 112-241 36-163 (296)
182 cd04129 Rho2 Rho2 subfamily. 99.5 5.1E-14 1.1E-18 113.8 11.4 113 116-240 2-119 (187)
183 PTZ00132 GTP-binding nuclear p 99.5 1.5E-13 3.2E-18 113.5 14.3 121 111-241 5-128 (215)
184 cd01876 YihA_EngB The YihA (En 99.5 2.6E-13 5.7E-18 106.4 14.9 123 118-245 2-129 (170)
185 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.6E-13 3.4E-18 117.7 14.6 130 111-242 34-169 (313)
186 KOG0395 Ras-related GTPase [Ge 99.5 4.1E-14 9E-19 115.0 10.4 122 115-247 3-129 (196)
187 cd01886 EF-G Elongation factor 99.5 2.4E-13 5.3E-18 116.0 14.7 113 117-240 1-130 (270)
188 TIGR00475 selB selenocysteine- 99.5 2.2E-13 4.8E-18 127.6 15.8 118 117-245 2-122 (581)
189 KOG1489 Predicted GTP-binding 99.5 4E-14 8.6E-19 119.5 9.6 122 117-241 198-327 (366)
190 cd04169 RF3 RF3 subfamily. Pe 99.5 2.9E-13 6.4E-18 115.3 15.0 115 116-241 3-138 (267)
191 COG1100 GTPase SAR1 and relate 99.5 3.6E-13 7.8E-18 111.2 14.8 120 116-244 6-129 (219)
192 KOG0073 GTP-binding ADP-ribosy 99.5 2.8E-13 6E-18 103.9 12.7 114 114-240 15-131 (185)
193 COG2262 HflX GTPases [General 99.5 2.5E-13 5.4E-18 118.7 13.8 130 112-243 189-321 (411)
194 TIGR00437 feoB ferrous iron tr 99.5 8.6E-14 1.9E-18 130.5 11.6 116 122-243 1-116 (591)
195 PRK12317 elongation factor 1-a 99.5 1.3E-13 2.9E-18 125.1 12.3 118 113-240 4-153 (425)
196 TIGR00487 IF-2 translation ini 99.5 4.2E-13 9.1E-18 125.5 15.5 117 112-240 84-201 (587)
197 cd01885 EF2 EF2 (for archaea a 99.5 5.4E-13 1.2E-17 110.6 14.6 112 116-239 1-138 (222)
198 PRK05306 infB translation init 99.5 3.9E-13 8.5E-18 128.7 15.6 117 112-240 287-403 (787)
199 PF04548 AIG1: AIG1 family; I 99.5 2.3E-13 4.9E-18 112.3 12.2 133 117-249 2-139 (212)
200 CHL00071 tufA elongation facto 99.5 5.1E-13 1.1E-17 120.6 14.8 121 113-244 10-146 (409)
201 PF09439 SRPRB: Signal recogni 99.5 4.4E-14 9.6E-19 112.6 6.7 118 115-242 3-128 (181)
202 cd04167 Snu114p Snu114p subfam 99.5 2.8E-13 6.1E-18 111.8 11.6 112 116-239 1-136 (213)
203 COG0370 FeoB Fe2+ transport sy 99.5 2.3E-13 5.1E-18 125.6 11.5 122 115-242 3-124 (653)
204 cd00882 Ras_like_GTPase Ras-li 99.5 4E-13 8.7E-18 102.6 11.1 116 120-245 1-121 (157)
205 COG0536 Obg Predicted GTPase [ 99.5 2.1E-13 4.6E-18 116.4 10.2 132 117-251 161-301 (369)
206 cd01888 eIF2_gamma eIF2-gamma 99.5 1.1E-12 2.4E-17 107.5 13.9 118 117-245 2-156 (203)
207 cd01883 EF1_alpha Eukaryotic e 99.5 9.3E-13 2E-17 109.2 13.1 113 117-240 1-151 (219)
208 cd04170 EF-G_bact Elongation f 99.5 1E-12 2.3E-17 112.2 13.7 114 117-241 1-131 (268)
209 PRK15467 ethanolamine utilizat 99.5 7.7E-13 1.7E-17 104.2 11.7 104 117-241 3-106 (158)
210 CHL00189 infB translation init 99.5 1.1E-12 2.3E-17 124.8 14.5 117 112-241 241-362 (742)
211 COG1163 DRG Predicted GTPase [ 99.5 3.2E-13 7E-18 114.5 9.4 90 116-208 64-153 (365)
212 PLN03126 Elongation factor Tu; 99.5 1.8E-12 3.9E-17 118.6 15.1 123 111-244 77-215 (478)
213 KOG0091 GTPase Rab39, small G 99.5 4E-13 8.8E-18 103.0 8.8 123 115-247 8-137 (213)
214 TIGR00483 EF-1_alpha translati 99.4 1.6E-12 3.6E-17 118.0 14.3 118 113-240 5-155 (426)
215 PRK12736 elongation factor Tu; 99.4 2E-12 4.4E-17 116.2 14.7 121 113-244 10-146 (394)
216 PLN03127 Elongation factor Tu; 99.4 1.7E-12 3.7E-17 118.1 14.2 121 113-244 59-195 (447)
217 TIGR00491 aIF-2 translation in 99.4 1.2E-12 2.5E-17 122.4 13.3 116 113-240 2-135 (590)
218 TIGR00484 EF-G translation elo 99.4 1.7E-12 3.6E-17 124.4 14.2 119 113-242 8-143 (689)
219 KOG0075 GTP-binding ADP-ribosy 99.4 5.4E-13 1.2E-17 100.5 8.3 119 115-245 20-141 (186)
220 PRK12735 elongation factor Tu; 99.4 3.5E-12 7.6E-17 114.7 15.1 120 113-243 10-145 (396)
221 cd04165 GTPBP1_like GTPBP1-lik 99.4 3E-12 6.6E-17 106.4 13.5 124 117-251 1-163 (224)
222 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 1.5E-12 3.2E-17 108.2 11.5 131 117-251 1-136 (232)
223 PRK10512 selenocysteinyl-tRNA- 99.4 4.7E-12 1E-16 119.2 15.7 121 117-248 2-126 (614)
224 TIGR01394 TypA_BipA GTP-bindin 99.4 4E-12 8.8E-17 119.2 15.1 114 116-241 2-131 (594)
225 PRK09866 hypothetical protein; 99.4 5E-12 1.1E-16 116.7 15.2 74 163-240 230-303 (741)
226 TIGR00485 EF-Tu translation el 99.4 5.3E-12 1.1E-16 113.5 15.1 121 113-244 10-146 (394)
227 PRK10218 GTP-binding protein; 99.4 4.3E-12 9.4E-17 119.0 15.0 117 114-241 4-135 (607)
228 PRK12739 elongation factor G; 99.4 3.8E-12 8.2E-17 122.0 14.7 118 113-241 6-140 (691)
229 KOG0097 GTPase Rab14, small G 99.4 2E-12 4.3E-17 96.9 9.9 119 115-244 11-134 (215)
230 TIGR00503 prfC peptide chain r 99.4 6.9E-12 1.5E-16 116.2 15.6 117 113-240 9-146 (527)
231 cd04104 p47_IIGP_like p47 (47- 99.4 4.4E-12 9.6E-17 103.4 12.4 117 116-241 2-122 (197)
232 PRK00049 elongation factor Tu; 99.4 7.9E-12 1.7E-16 112.4 15.0 120 113-243 10-145 (396)
233 cd01899 Ygr210 Ygr210 subfamil 99.4 4.9E-12 1.1E-16 110.1 13.0 86 118-206 1-110 (318)
234 PRK00741 prfC peptide chain re 99.4 6.4E-12 1.4E-16 116.4 14.4 118 113-241 8-146 (526)
235 PF10662 PduV-EutP: Ethanolami 99.4 6.3E-12 1.4E-16 96.2 11.2 112 116-250 2-114 (143)
236 PRK05124 cysN sulfate adenylyl 99.4 6.2E-12 1.3E-16 115.3 13.0 118 113-240 25-174 (474)
237 PRK00007 elongation factor G; 99.4 9.4E-12 2E-16 119.2 14.5 119 113-242 8-143 (693)
238 PRK04004 translation initiatio 99.4 9.7E-12 2.1E-16 116.5 14.2 115 112-239 3-136 (586)
239 COG2229 Predicted GTPase [Gene 99.4 2.7E-11 5.9E-16 95.0 14.2 125 112-246 7-141 (187)
240 TIGR02034 CysN sulfate adenyly 99.4 7.2E-12 1.6E-16 113.0 12.4 114 117-240 2-147 (406)
241 TIGR01393 lepA GTP-binding pro 99.4 1.3E-11 2.7E-16 116.1 14.4 114 115-240 3-136 (595)
242 KOG0070 GTP-binding ADP-ribosy 99.4 3.9E-12 8.6E-17 99.8 9.0 119 112-243 14-135 (181)
243 TIGR03680 eif2g_arch translati 99.3 1.4E-11 3.1E-16 111.1 13.3 121 114-245 3-153 (406)
244 PRK05506 bifunctional sulfate 99.3 9.1E-12 2E-16 118.3 12.4 118 113-240 22-171 (632)
245 PF00350 Dynamin_N: Dynamin fa 99.3 2E-11 4.4E-16 96.6 12.4 112 118-236 1-168 (168)
246 KOG0393 Ras-related small GTPa 99.3 1.7E-12 3.8E-17 104.1 6.0 116 115-241 4-124 (198)
247 PRK13351 elongation factor G; 99.3 1.5E-11 3.2E-16 118.0 13.3 117 114-241 7-140 (687)
248 PRK04000 translation initiatio 99.3 2.7E-11 5.8E-16 109.4 13.6 121 113-244 7-157 (411)
249 KOG0090 Signal recognition par 99.3 1.4E-11 3.1E-16 98.7 10.0 117 115-244 38-163 (238)
250 TIGR00993 3a0901s04IAP86 chlor 99.3 5.4E-11 1.2E-15 110.3 15.0 128 113-241 116-251 (763)
251 KOG0083 GTPase Rab26/Rab37, sm 99.3 6.1E-13 1.3E-17 98.7 1.4 115 120-244 2-121 (192)
252 KOG3883 Ras family small GTPas 99.3 4.5E-11 9.8E-16 90.9 11.4 124 114-245 8-137 (198)
253 KOG0074 GTP-binding ADP-ribosy 99.3 1.6E-11 3.5E-16 92.1 8.7 124 112-247 14-140 (185)
254 PRK05433 GTP-binding protein L 99.3 4.7E-11 1E-15 112.3 14.0 116 114-241 6-141 (600)
255 smart00053 DYNc Dynamin, GTPas 99.3 9.3E-11 2E-15 98.0 13.9 127 113-242 24-208 (240)
256 KOG1707 Predicted Ras related/ 99.3 2.4E-11 5.1E-16 110.0 10.7 121 113-244 7-133 (625)
257 KOG0081 GTPase Rab27, small G 99.3 3.4E-12 7.3E-17 97.5 4.5 119 117-247 11-145 (219)
258 PF00735 Septin: Septin; Inte 99.3 1E-10 2.2E-15 100.2 13.8 133 116-251 5-167 (281)
259 KOG0071 GTP-binding ADP-ribosy 99.3 1E-10 2.3E-15 87.6 11.6 120 115-247 17-139 (180)
260 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.8E-10 4E-15 95.8 14.4 111 112-241 36-148 (225)
261 PTZ00141 elongation factor 1- 99.3 1.3E-10 2.8E-15 105.9 14.2 114 113-238 5-157 (446)
262 PTZ00416 elongation factor 2; 99.2 8.4E-11 1.8E-15 114.6 13.5 117 112-239 16-157 (836)
263 TIGR00490 aEF-2 translation el 99.2 4.3E-11 9.2E-16 115.1 11.2 117 113-240 17-152 (720)
264 KOG4252 GTP-binding protein [S 99.2 5.5E-12 1.2E-16 98.2 2.7 120 113-244 18-142 (246)
265 PLN00116 translation elongatio 99.2 2.2E-10 4.8E-15 111.9 14.4 118 111-239 15-163 (843)
266 COG0532 InfB Translation initi 99.2 2.3E-10 4.9E-15 103.3 12.6 117 113-241 3-122 (509)
267 KOG1954 Endocytosis/signaling 99.2 2.4E-10 5.2E-15 98.6 12.1 133 113-248 56-233 (532)
268 PTZ00258 GTP-binding protein; 99.2 1.4E-10 3E-15 103.1 10.3 91 113-206 19-126 (390)
269 KOG1532 GTPase XAB1, interacts 99.2 8.4E-11 1.8E-15 97.8 8.3 90 163-254 116-209 (366)
270 cd01900 YchF YchF subfamily. 99.2 1.1E-10 2.3E-15 99.5 8.8 86 118-206 1-103 (274)
271 PRK09601 GTP-binding protein Y 99.2 2E-10 4.2E-15 101.1 10.5 88 116-206 3-107 (364)
272 PLN00043 elongation factor 1-a 99.2 1E-09 2.2E-14 100.1 15.2 115 113-239 5-158 (447)
273 KOG0077 Vesicle coat complex C 99.2 3E-10 6.4E-15 87.6 9.7 117 113-242 18-137 (193)
274 KOG0076 GTP-binding ADP-ribosy 99.1 2.2E-10 4.8E-15 88.9 7.9 126 115-249 17-149 (197)
275 PRK12740 elongation factor G; 99.1 4.9E-10 1.1E-14 107.3 12.1 110 121-241 1-127 (668)
276 PRK09602 translation-associate 99.1 6.7E-10 1.5E-14 99.6 11.5 88 116-206 2-113 (396)
277 KOG1145 Mitochondrial translat 99.1 1.6E-09 3.4E-14 97.8 13.1 117 112-241 150-268 (683)
278 PRK07560 elongation factor EF- 99.1 5.1E-10 1.1E-14 108.0 10.5 117 112-239 17-152 (731)
279 PTZ00327 eukaryotic translatio 99.1 1.5E-09 3.3E-14 98.9 12.5 129 113-251 32-196 (460)
280 TIGR02836 spore_IV_A stage IV 99.1 1E-09 2.2E-14 97.0 10.6 121 116-239 18-193 (492)
281 PTZ00099 rab6; Provisional 99.0 1.7E-09 3.6E-14 86.7 9.6 75 158-241 24-100 (176)
282 COG5256 TEF1 Translation elong 99.0 5.3E-09 1.1E-13 91.9 13.0 118 113-240 5-159 (428)
283 PF03029 ATP_bind_1: Conserved 99.0 5.2E-10 1.1E-14 93.7 6.4 76 164-242 92-172 (238)
284 COG5019 CDC3 Septin family pro 99.0 1.3E-08 2.9E-13 88.2 15.1 136 113-251 21-187 (373)
285 KOG0462 Elongation factor-type 99.0 2.4E-09 5.2E-14 96.6 10.3 127 111-248 56-201 (650)
286 KOG1547 Septin CDC10 and relat 99.0 1.1E-08 2.3E-13 83.9 12.2 134 115-251 46-209 (336)
287 COG0480 FusA Translation elong 99.0 5.1E-09 1.1E-13 99.3 11.7 120 112-242 7-144 (697)
288 PRK13768 GTPase; Provisional 99.0 3.5E-09 7.5E-14 89.7 9.4 86 163-250 97-186 (253)
289 KOG2655 Septin family protein 99.0 2.1E-08 4.6E-13 87.5 14.1 134 115-251 21-183 (366)
290 KOG0410 Predicted GTP binding 98.9 3.1E-09 6.6E-14 90.5 7.5 129 111-241 174-309 (410)
291 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 5.6E-09 1.2E-13 82.3 8.2 118 113-242 8-130 (216)
292 PF05049 IIGP: Interferon-indu 98.9 3.4E-09 7.4E-14 93.5 7.8 114 115-238 35-153 (376)
293 COG2895 CysN GTPases - Sulfate 98.9 1.7E-08 3.7E-13 86.9 11.5 119 114-242 5-155 (431)
294 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.2E-09 9E-14 82.7 7.3 56 115-173 102-157 (157)
295 COG1217 TypA Predicted membran 98.9 1.2E-08 2.6E-13 90.7 10.0 116 115-241 5-135 (603)
296 cd04178 Nucleostemin_like Nucl 98.9 5.7E-09 1.2E-13 83.2 7.2 58 113-173 115-172 (172)
297 COG4108 PrfC Peptide chain rel 98.9 2.5E-08 5.3E-13 88.1 11.3 119 113-242 10-149 (528)
298 COG4917 EutP Ethanolamine util 98.8 1.3E-08 2.8E-13 75.2 7.0 111 116-248 2-112 (148)
299 KOG2486 Predicted GTPase [Gene 98.8 3.6E-08 7.7E-13 82.5 10.2 124 112-241 133-263 (320)
300 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.3E-08 2.7E-13 78.5 6.9 55 117-174 85-139 (141)
301 KOG0468 U5 snRNP-specific prot 98.8 1.9E-08 4.1E-13 92.6 8.6 128 100-239 113-262 (971)
302 KOG3886 GTP-binding protein [S 98.8 2.1E-08 4.5E-13 81.7 7.7 129 115-248 4-138 (295)
303 KOG1486 GTP-binding protein DR 98.8 1.9E-08 4E-13 83.0 7.2 91 116-209 63-153 (364)
304 COG0012 Predicted GTPase, prob 98.8 2.4E-08 5.2E-13 87.1 7.6 89 115-206 2-108 (372)
305 cd01851 GBP Guanylate-binding 98.7 1.2E-07 2.6E-12 78.9 11.0 93 114-208 6-104 (224)
306 cd01849 YlqF_related_GTPase Yl 98.7 3.2E-08 6.9E-13 77.5 7.0 58 113-173 98-155 (155)
307 COG1161 Predicted GTPases [Gen 98.7 2.9E-08 6.3E-13 86.9 7.1 63 112-177 129-191 (322)
308 cd01855 YqeH YqeH. YqeH is an 98.7 2.5E-08 5.5E-13 80.7 6.0 57 114-173 126-190 (190)
309 TIGR03596 GTPase_YlqF ribosome 98.7 6.6E-08 1.4E-12 82.9 8.4 63 113-178 116-178 (276)
310 KOG1144 Translation initiation 98.7 4.9E-08 1.1E-12 90.9 8.0 117 111-239 471-605 (1064)
311 cd01856 YlqF YlqF. Proteins o 98.7 6.6E-08 1.4E-12 77.0 7.8 58 113-173 113-170 (171)
312 COG0481 LepA Membrane GTPase L 98.7 1.1E-07 2.3E-12 84.9 9.6 126 113-249 7-153 (603)
313 PRK09563 rbgA GTPase YlqF; Rev 98.7 1E-07 2.2E-12 82.2 9.3 62 113-177 119-180 (287)
314 KOG1673 Ras GTPases [General f 98.7 7.8E-08 1.7E-12 73.6 7.3 119 111-239 16-137 (205)
315 TIGR03597 GTPase_YqeH ribosome 98.7 3.4E-08 7.3E-13 87.8 6.1 127 115-248 154-288 (360)
316 KOG0072 GTP-binding ADP-ribosy 98.7 9.7E-08 2.1E-12 72.2 7.2 118 114-244 17-137 (182)
317 COG3276 SelB Selenocysteine-sp 98.6 5.9E-07 1.3E-11 79.7 12.7 125 117-251 2-128 (447)
318 COG0050 TufB GTPases - transla 98.6 3.5E-07 7.6E-12 77.2 10.6 124 113-247 10-149 (394)
319 TIGR00092 GTP-binding protein 98.6 1E-07 2.2E-12 84.2 7.7 89 116-206 3-108 (368)
320 PRK14845 translation initiatio 98.6 3E-07 6.4E-12 90.8 11.2 103 126-240 472-592 (1049)
321 KOG0458 Elongation factor 1 al 98.6 3.5E-07 7.6E-12 83.4 10.8 126 114-249 176-340 (603)
322 cd00066 G-alpha G protein alph 98.6 3.6E-07 7.7E-12 79.9 10.1 73 159-240 157-242 (317)
323 PRK09435 membrane ATPase/prote 98.6 3.8E-07 8.3E-12 79.8 9.7 65 161-243 147-211 (332)
324 COG5257 GCD11 Translation init 98.5 6.4E-07 1.4E-11 76.5 9.8 128 114-254 9-168 (415)
325 smart00275 G_alpha G protein a 98.5 8.5E-07 1.8E-11 78.3 10.6 73 159-240 180-265 (342)
326 KOG0461 Selenocysteine-specifi 98.5 1.5E-06 3.4E-11 74.9 11.6 119 115-244 7-140 (522)
327 PRK12289 GTPase RsgA; Reviewed 98.5 1.9E-07 4E-12 82.6 6.2 60 116-178 173-239 (352)
328 cd01859 MJ1464 MJ1464. This f 98.5 4.7E-07 1E-11 70.8 7.4 57 114-173 100-156 (156)
329 PRK12288 GTPase RsgA; Reviewed 98.5 4E-07 8.6E-12 80.4 7.6 59 117-178 207-272 (347)
330 TIGR00750 lao LAO/AO transport 98.5 3.2E-06 7E-11 73.4 12.6 65 161-243 125-189 (300)
331 TIGR03348 VI_IcmF type VI secr 98.4 4.9E-07 1.1E-11 91.5 8.2 123 112-240 108-257 (1169)
332 PF03193 DUF258: Protein of un 98.4 2.5E-07 5.5E-12 72.5 4.8 61 116-179 36-103 (161)
333 TIGR00157 ribosome small subun 98.4 5.4E-07 1.2E-11 75.9 6.9 61 115-179 120-187 (245)
334 KOG1491 Predicted GTP-binding 98.4 7.3E-07 1.6E-11 76.7 7.6 92 112-206 17-125 (391)
335 PRK13796 GTPase YqeH; Provisio 98.4 4.9E-07 1.1E-11 80.6 6.6 58 115-175 160-222 (365)
336 cd03112 CobW_like The function 98.4 3.6E-06 7.8E-11 66.2 9.4 71 162-238 86-158 (158)
337 KOG0464 Elongation factor G [T 98.3 4.5E-07 9.7E-12 79.8 4.4 120 111-241 33-169 (753)
338 KOG4423 GTP-binding protein-li 98.3 1.9E-08 4.1E-13 79.2 -3.9 118 115-243 25-152 (229)
339 KOG0447 Dynamin-like GTP bindi 98.3 3.5E-06 7.5E-11 76.6 9.7 130 111-241 304-494 (980)
340 COG1162 Predicted GTPases [Gen 98.3 1.6E-06 3.5E-11 74.1 7.0 63 113-178 162-231 (301)
341 KOG1424 Predicted GTP-binding 98.3 1.3E-06 2.9E-11 78.7 6.1 63 115-180 314-376 (562)
342 KOG3887 Predicted small GTPase 98.3 3E-06 6.6E-11 69.8 7.6 122 115-242 27-151 (347)
343 KOG0448 Mitofusin 1 GTPase, in 98.3 9.9E-06 2.1E-10 75.4 11.6 120 113-241 107-276 (749)
344 PF03308 ArgK: ArgK protein; 98.3 2.2E-06 4.7E-11 71.7 6.8 113 114-246 28-187 (266)
345 PRK00098 GTPase RsgA; Reviewed 98.3 3.1E-06 6.6E-11 73.4 7.7 60 114-176 163-229 (298)
346 PRK12727 flagellar biosynthesi 98.2 4.7E-06 1E-10 76.7 8.5 203 16-240 254-498 (559)
347 COG5192 BMS1 GTP-binding prote 98.2 9.4E-06 2E-10 74.1 10.2 116 109-242 63-179 (1077)
348 TIGR01425 SRP54_euk signal rec 98.2 1.8E-05 3.9E-10 71.5 12.1 118 115-241 100-254 (429)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.9E-06 8.4E-11 64.6 6.8 64 188-251 4-67 (141)
350 KOG0467 Translation elongation 98.2 8.1E-06 1.8E-10 76.7 9.4 117 111-238 5-136 (887)
351 cd01854 YjeQ_engC YjeQ/EngC. 98.2 8.1E-06 1.8E-10 70.4 8.6 58 115-175 161-225 (287)
352 KOG3859 Septins (P-loop GTPase 98.2 1.1E-05 2.4E-10 67.7 8.8 131 115-248 42-198 (406)
353 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.8E-06 1E-10 65.2 6.1 61 191-251 4-64 (157)
354 smart00010 small_GTPase Small 98.1 1.2E-05 2.7E-10 59.6 7.3 90 117-240 2-91 (124)
355 KOG2485 Conserved ATP/GTP bind 98.1 8.4E-06 1.8E-10 69.5 6.6 73 111-183 139-216 (335)
356 KOG0465 Mitochondrial elongati 98.1 8.6E-06 1.9E-10 74.9 6.8 120 113-243 37-173 (721)
357 KOG0082 G-protein alpha subuni 98.1 3.7E-05 7.9E-10 67.4 10.3 78 155-241 187-277 (354)
358 PRK14722 flhF flagellar biosyn 98.1 3.3E-05 7.2E-10 68.7 10.1 123 113-240 135-295 (374)
359 PRK10416 signal recognition pa 98.0 9.1E-05 2E-09 64.8 12.5 121 114-240 113-273 (318)
360 COG1703 ArgK Putative periplas 98.0 5.1E-05 1.1E-09 64.7 10.4 113 111-243 47-206 (323)
361 PF06858 NOG1: Nucleolar GTP-b 98.0 2.3E-05 4.9E-10 50.1 6.3 51 186-237 4-58 (58)
362 KOG0460 Mitochondrial translat 98.0 4.4E-05 9.6E-10 65.9 10.1 125 112-246 51-190 (449)
363 PF00448 SRP54: SRP54-type pro 98.0 3.7E-05 8E-10 62.6 9.3 119 116-241 2-155 (196)
364 PF02492 cobW: CobW/HypB/UreG, 98.0 3.9E-06 8.5E-11 67.2 3.5 128 116-252 1-168 (178)
365 KOG1487 GTP-binding protein DR 98.0 7.7E-06 1.7E-10 68.1 5.1 91 116-209 60-150 (358)
366 TIGR00073 hypB hydrogenase acc 98.0 5.9E-05 1.3E-09 61.9 10.3 27 112-138 19-45 (207)
367 TIGR00064 ftsY signal recognit 98.0 0.00012 2.6E-09 62.6 12.4 122 114-241 71-232 (272)
368 COG5258 GTPBP1 GTPase [General 98.0 1.1E-05 2.4E-10 70.6 5.4 135 107-251 109-280 (527)
369 COG0523 Putative GTPases (G3E 97.9 6.6E-05 1.4E-09 65.6 9.3 131 116-252 2-171 (323)
370 PRK11889 flhF flagellar biosyn 97.9 5.1E-05 1.1E-09 67.6 8.5 120 114-240 240-391 (436)
371 KOG2423 Nucleolar GTPase [Gene 97.9 1.1E-05 2.4E-10 70.8 4.1 65 110-177 302-366 (572)
372 cd03115 SRP The signal recogni 97.8 0.00019 4.1E-09 57.0 10.1 73 162-241 82-154 (173)
373 PRK14721 flhF flagellar biosyn 97.8 0.00013 2.8E-09 65.9 9.8 119 113-240 189-340 (420)
374 PRK12724 flagellar biosynthesi 97.8 8.3E-05 1.8E-09 66.9 8.4 120 115-240 223-373 (432)
375 COG3523 IcmF Type VI protein s 97.8 5.9E-05 1.3E-09 75.3 7.6 126 113-240 123-270 (1188)
376 PRK11537 putative GTP-binding 97.8 0.0001 2.3E-09 64.4 8.3 25 114-138 3-27 (318)
377 PRK12726 flagellar biosynthesi 97.8 9E-05 2E-09 65.8 7.9 119 113-240 204-356 (407)
378 COG1419 FlhF Flagellar GTP-bin 97.8 0.00013 2.8E-09 64.9 8.8 117 114-240 202-352 (407)
379 PRK12723 flagellar biosynthesi 97.8 0.00039 8.5E-09 62.3 11.8 121 114-240 173-326 (388)
380 KOG2484 GTPase [General functi 97.8 2.3E-05 4.9E-10 68.9 3.6 63 112-177 249-311 (435)
381 cd04178 Nucleostemin_like Nucl 97.7 5.9E-05 1.3E-09 60.1 5.6 56 197-252 1-56 (172)
382 TIGR02475 CobW cobalamin biosy 97.7 0.00033 7.1E-09 61.9 10.7 24 115-138 4-27 (341)
383 KOG1533 Predicted GTPase [Gene 97.7 3.4E-05 7.3E-10 63.4 4.0 78 163-242 97-179 (290)
384 PRK14974 cell division protein 97.7 0.00047 1E-08 60.7 11.4 121 114-241 139-294 (336)
385 TIGR00101 ureG urease accessor 97.7 0.0003 6.5E-09 57.4 9.6 23 116-138 2-24 (199)
386 KOG1707 Predicted Ras related/ 97.7 0.00037 8.1E-09 64.1 11.0 116 112-242 422-542 (625)
387 cd03114 ArgK-like The function 97.7 0.00023 4.9E-09 55.3 8.3 20 118-137 2-21 (148)
388 KOG1534 Putative transcription 97.7 3E-05 6.5E-10 62.8 3.3 78 163-241 98-179 (273)
389 KOG2743 Cobalamin synthesis pr 97.7 0.00043 9.4E-09 59.0 9.9 136 109-252 51-237 (391)
390 PRK05703 flhF flagellar biosyn 97.7 0.00014 3.1E-09 66.1 7.5 121 115-241 221-372 (424)
391 PRK14723 flhF flagellar biosyn 97.6 0.00049 1.1E-08 66.3 10.7 121 114-240 184-337 (767)
392 cd01859 MJ1464 MJ1464. This f 97.6 0.00019 4.1E-09 55.9 6.7 55 189-245 6-60 (156)
393 cd01856 YlqF YlqF. Proteins o 97.6 0.00019 4.2E-09 56.9 6.8 58 186-247 10-67 (171)
394 cd01849 YlqF_related_GTPase Yl 97.6 0.00015 3.3E-09 56.5 5.7 50 197-248 1-51 (155)
395 TIGR03596 GTPase_YlqF ribosome 97.6 0.00023 5.1E-09 61.0 7.0 60 187-250 13-72 (276)
396 COG0378 HypB Ni2+-binding GTPa 97.5 0.00013 2.9E-09 58.5 4.9 23 115-137 13-35 (202)
397 KOG2484 GTPase [General functi 97.5 0.00029 6.3E-09 62.1 6.9 71 183-253 134-204 (435)
398 cd02038 FleN-like FleN is a me 97.5 0.0022 4.8E-08 49.1 10.8 104 119-239 4-110 (139)
399 cd01855 YqeH YqeH. YqeH is an 97.5 0.00021 4.5E-09 57.7 5.3 54 185-242 24-77 (190)
400 PRK00771 signal recognition pa 97.5 0.0002 4.4E-09 65.1 5.6 117 114-240 94-246 (437)
401 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00035 7.5E-09 60.3 6.7 60 187-250 16-75 (287)
402 PRK06995 flhF flagellar biosyn 97.4 0.0009 1.9E-08 61.5 9.5 120 114-240 255-405 (484)
403 PRK06731 flhF flagellar biosyn 97.4 0.00047 1E-08 58.9 7.2 120 114-240 74-225 (270)
404 KOG1143 Predicted translation 97.4 0.00017 3.7E-09 63.1 4.4 127 116-251 168-328 (591)
405 PRK10867 signal recognition pa 97.4 0.0021 4.6E-08 58.4 11.6 71 162-239 183-253 (433)
406 PRK10463 hydrogenase nickel in 97.4 0.00038 8.3E-09 59.7 6.1 27 112-138 101-127 (290)
407 KOG0466 Translation initiation 97.3 0.0003 6.6E-09 60.1 4.4 79 163-254 125-207 (466)
408 TIGR00157 ribosome small subun 97.2 0.00084 1.8E-08 56.6 6.6 51 192-245 33-86 (245)
409 PRK12289 GTPase RsgA; Reviewed 97.2 0.00081 1.7E-08 59.6 6.6 56 193-251 87-145 (352)
410 COG0552 FtsY Signal recognitio 97.2 0.00056 1.2E-08 59.3 5.3 118 113-238 137-296 (340)
411 PRK01889 GTPase RsgA; Reviewed 97.2 0.00055 1.2E-08 60.9 5.1 60 114-176 194-260 (356)
412 KOG3905 Dynein light intermedi 97.2 0.0062 1.4E-07 52.7 11.1 27 113-139 50-76 (473)
413 COG1618 Predicted nucleotide k 97.1 0.013 2.9E-07 45.8 11.4 115 115-238 5-142 (179)
414 KOG0780 Signal recognition par 97.1 0.0028 6.1E-08 56.0 8.3 91 113-208 99-226 (483)
415 TIGR00959 ffh signal recogniti 97.1 0.0034 7.4E-08 57.1 9.2 71 162-239 182-252 (428)
416 KOG0469 Elongation factor 2 [T 97.1 0.0021 4.5E-08 58.5 7.5 116 111-238 15-162 (842)
417 KOG0463 GTP-binding protein GP 97.0 0.0016 3.5E-08 57.2 6.4 130 112-251 130-298 (641)
418 KOG0446 Vacuolar sorting prote 97.0 0.00049 1.1E-08 65.6 3.4 130 111-241 25-214 (657)
419 PF00004 AAA: ATPase family as 97.0 0.0035 7.6E-08 46.8 7.4 21 118-138 1-21 (132)
420 cd02042 ParA ParA and ParB of 97.0 0.0091 2E-07 43.0 9.2 71 118-207 2-73 (104)
421 cd03111 CpaE_like This protein 97.0 0.002 4.4E-08 46.9 5.7 100 120-235 5-106 (106)
422 PRK14737 gmk guanylate kinase; 97.0 0.00048 1E-08 55.6 2.6 39 114-152 3-41 (186)
423 KOG0099 G protein subunit Galp 97.0 0.0018 3.8E-08 54.3 5.6 75 160-243 199-286 (379)
424 KOG0056 Heavy metal exporter H 96.9 0.00018 4E-09 65.2 -0.7 72 57-136 503-585 (790)
425 KOG1424 Predicted GTP-binding 96.9 0.0025 5.5E-08 58.0 6.5 66 187-252 166-231 (562)
426 KOG0058 Peptide exporter, ABC 96.8 0.00019 4.1E-09 67.7 -1.4 101 18-137 404-516 (716)
427 COG1132 MdlB ABC-type multidru 96.8 0.00018 4E-09 67.9 -1.7 99 21-138 271-378 (567)
428 COG3640 CooC CO dehydrogenase 96.8 0.017 3.6E-07 47.9 9.8 46 193-239 153-198 (255)
429 COG0541 Ffh Signal recognition 96.7 0.021 4.6E-07 51.4 11.0 43 162-209 182-226 (451)
430 cd02036 MinD Bacterial cell di 96.7 0.03 6.5E-07 44.1 11.1 64 164-240 64-128 (179)
431 KOG2423 Nucleolar GTPase [Gene 96.7 0.0057 1.2E-07 54.2 7.2 65 187-251 205-269 (572)
432 PRK14738 gmk guanylate kinase; 96.7 0.0012 2.5E-08 54.2 2.9 27 113-139 11-37 (206)
433 PF13401 AAA_22: AAA domain; P 96.7 0.0033 7.1E-08 47.1 5.1 25 115-139 4-28 (131)
434 TIGR03597 GTPase_YqeH ribosome 96.7 0.0041 8.9E-08 55.4 6.5 51 187-241 55-105 (360)
435 COG0194 Gmk Guanylate kinase [ 96.7 0.00067 1.5E-08 54.1 1.2 38 114-152 3-40 (191)
436 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0053 1.2E-07 53.0 6.9 49 192-243 75-126 (287)
437 PRK00098 GTPase RsgA; Reviewed 96.7 0.0041 8.9E-08 54.0 6.0 46 193-241 78-126 (298)
438 cd00009 AAA The AAA+ (ATPases 96.6 0.02 4.4E-07 42.8 9.2 24 115-138 19-42 (151)
439 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.03 6.6E-07 38.9 9.4 69 118-207 2-70 (99)
440 COG1116 TauB ABC-type nitrate/ 96.6 0.0011 2.5E-08 55.2 2.0 29 111-139 25-53 (248)
441 COG2884 FtsE Predicted ATPase 96.6 0.0016 3.5E-08 52.2 2.5 49 83-139 4-52 (223)
442 PF00503 G-alpha: G-protein al 96.5 0.0038 8.2E-08 56.2 5.2 79 153-240 225-317 (389)
443 KOG0057 Mitochondrial Fe/S clu 96.5 0.0013 2.7E-08 60.5 2.0 50 80-137 351-400 (591)
444 PF05621 TniB: Bacterial TniB 96.5 0.013 2.8E-07 50.5 7.8 110 111-235 57-189 (302)
445 PF13207 AAA_17: AAA domain; P 96.5 0.0027 5.8E-08 47.0 3.3 22 117-138 1-22 (121)
446 KOG0085 G protein subunit Galp 96.5 0.0015 3.3E-08 53.8 2.0 24 112-135 36-59 (359)
447 TIGR02868 CydC thiol reductant 96.4 0.0017 3.7E-08 60.8 2.4 50 81-138 335-384 (529)
448 TIGR03263 guanyl_kin guanylate 96.4 0.0031 6.7E-08 50.2 3.3 24 116-139 2-25 (180)
449 PRK13695 putative NTPase; Prov 96.3 0.051 1.1E-06 43.0 10.1 21 117-137 2-22 (174)
450 COG2274 SunT ABC-type bacterio 96.3 0.00066 1.4E-08 65.4 -1.3 51 81-139 472-523 (709)
451 COG1126 GlnQ ABC-type polar am 96.3 0.003 6.6E-08 51.7 2.6 29 111-139 24-52 (240)
452 PF05729 NACHT: NACHT domain 96.3 0.022 4.8E-07 44.0 7.4 22 117-138 2-23 (166)
453 COG3839 MalK ABC-type sugar tr 96.2 0.0024 5.1E-08 56.1 2.0 29 111-139 25-53 (338)
454 PF00005 ABC_tran: ABC transpo 96.2 0.0051 1.1E-07 46.5 3.6 27 113-139 9-35 (137)
455 KOG0705 GTPase-activating prot 96.2 0.0047 1E-07 56.8 3.7 107 115-236 30-139 (749)
456 COG4987 CydC ABC-type transpor 96.2 0.0072 1.6E-07 55.6 4.8 49 82-138 338-387 (573)
457 PRK00300 gmk guanylate kinase; 96.2 0.005 1.1E-07 50.1 3.6 25 114-138 4-28 (205)
458 PF09547 Spore_IV_A: Stage IV 96.1 0.069 1.5E-06 48.2 10.5 22 117-138 19-40 (492)
459 COG1136 SalX ABC-type antimicr 96.1 0.0055 1.2E-07 50.7 3.5 29 111-139 27-55 (226)
460 KOG0459 Polypeptide release fa 96.1 0.0052 1.1E-07 54.6 3.4 119 112-240 76-231 (501)
461 PRK08118 topology modulation p 96.1 0.0052 1.1E-07 48.6 3.2 23 116-138 2-24 (167)
462 COG1161 Predicted GTPases [Gen 96.1 0.016 3.5E-07 50.8 6.6 63 186-252 25-87 (322)
463 cd00071 GMPK Guanosine monopho 96.1 0.0047 1E-07 47.2 2.7 21 118-138 2-22 (137)
464 cd03226 ABC_cobalt_CbiO_domain 96.1 0.004 8.7E-08 50.7 2.5 28 112-139 23-50 (205)
465 PF13671 AAA_33: AAA domain; P 96.1 0.0056 1.2E-07 46.5 3.0 20 118-137 2-21 (143)
466 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.0031 6.8E-08 53.0 1.7 44 85-137 9-52 (254)
467 COG1120 FepC ABC-type cobalami 96.0 0.003 6.5E-08 53.4 1.5 28 111-138 24-51 (258)
468 PRK07261 topology modulation p 96.0 0.0057 1.2E-07 48.6 3.0 21 117-137 2-22 (171)
469 PRK13796 GTPase YqeH; Provisio 96.0 0.024 5.1E-07 50.7 7.2 49 189-241 62-111 (365)
470 COG3840 ThiQ ABC-type thiamine 96.0 0.0067 1.5E-07 48.5 3.2 28 112-139 22-49 (231)
471 TIGR02315 ABC_phnC phosphonate 96.0 0.0055 1.2E-07 51.3 2.9 28 111-138 24-51 (243)
472 COG3638 ABC-type phosphate/pho 96.0 0.0044 9.5E-08 51.4 2.2 44 86-137 9-52 (258)
473 TIGR02673 FtsE cell division A 95.9 0.0049 1.1E-07 50.6 2.4 29 111-139 24-52 (214)
474 smart00382 AAA ATPases associa 95.9 0.0081 1.8E-07 44.5 3.4 25 115-139 2-26 (148)
475 PF13555 AAA_29: P-loop contai 95.9 0.011 2.3E-07 38.7 3.4 21 116-136 24-44 (62)
476 TIGR00958 3a01208 Conjugate Tr 95.9 0.0011 2.4E-08 64.3 -1.8 50 81-138 479-530 (711)
477 COG0563 Adk Adenylate kinase a 95.9 0.007 1.5E-07 48.5 3.0 22 117-138 2-23 (178)
478 cd03292 ABC_FtsE_transporter F 95.9 0.0044 9.4E-08 50.8 1.8 27 112-138 24-50 (214)
479 cd03110 Fer4_NifH_child This p 95.8 0.097 2.1E-06 41.5 9.4 66 161-240 91-157 (179)
480 KOG0781 Signal recognition par 95.8 0.043 9.3E-07 49.9 7.9 76 161-241 465-545 (587)
481 COG4988 CydD ABC-type transpor 95.8 0.0088 1.9E-07 55.5 3.6 46 85-138 325-370 (559)
482 COG3842 PotA ABC-type spermidi 95.8 0.0051 1.1E-07 54.3 2.0 29 111-139 27-55 (352)
483 cd03223 ABCD_peroxisomal_ALDP 95.8 0.0065 1.4E-07 47.9 2.4 29 111-139 23-51 (166)
484 cd03257 ABC_NikE_OppD_transpor 95.8 0.0068 1.5E-07 50.1 2.6 29 111-139 27-55 (228)
485 PF02263 GBP: Guanylate-bindin 95.8 0.015 3.2E-07 49.5 4.7 62 114-175 20-86 (260)
486 cd03222 ABC_RNaseL_inhibitor T 95.8 0.0097 2.1E-07 47.6 3.3 27 113-139 23-49 (177)
487 TIGR01166 cbiO cobalt transpor 95.7 0.01 2.2E-07 47.8 3.5 29 111-139 14-42 (190)
488 PRK10078 ribose 1,5-bisphospho 95.7 0.01 2.2E-07 47.7 3.4 23 116-138 3-25 (186)
489 TIGR00235 udk uridine kinase. 95.7 0.0095 2.1E-07 48.7 3.3 25 113-137 4-28 (207)
490 cd03238 ABC_UvrA The excision 95.7 0.011 2.3E-07 47.3 3.5 27 111-137 17-43 (176)
491 cd03254 ABCC_Glucan_exporter_l 95.7 0.0079 1.7E-07 49.9 2.7 29 111-139 25-53 (229)
492 PRK08181 transposase; Validate 95.7 0.021 4.6E-07 48.7 5.3 24 114-137 105-128 (269)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.011 2.4E-07 48.5 3.5 29 111-139 26-54 (218)
494 cd03290 ABCC_SUR1_N The SUR do 95.7 0.0079 1.7E-07 49.5 2.6 29 111-139 23-51 (218)
495 COG1341 Predicted GTPase or GT 95.7 0.073 1.6E-06 47.5 8.7 26 112-137 70-95 (398)
496 TIGR00960 3a0501s02 Type II (G 95.6 0.012 2.5E-07 48.4 3.5 28 111-138 25-52 (216)
497 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.5E-07 39.4 2.9 21 118-138 2-22 (69)
498 COG4525 TauB ABC-type taurine 95.6 0.0096 2.1E-07 48.2 2.8 28 111-138 27-54 (259)
499 PF05783 DLIC: Dynein light in 95.6 0.056 1.2E-06 49.8 8.1 88 113-209 23-114 (472)
500 COG1117 PstB ABC-type phosphat 95.6 0.011 2.4E-07 48.4 3.2 27 111-137 29-55 (253)
No 1
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=225.52 Aligned_cols=225 Identities=21% Similarity=0.253 Sum_probs=187.9
Q ss_pred cCCccccccCCcchhhhccccccCCceeeeeecccccccccchHHHHHHHHhhhc-ccccCCCCC-CC---CccChHhhh
Q 025346 10 SFGSLFPHYSTLTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQ-REMDLDDGD-EM---EFDDASSFL 84 (254)
Q Consensus 10 ~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~-~~---~~~~~~~~~ 84 (254)
.|++|||||++| ++..++.++++..++++..+. ....++...+ +.+...++. .. -....+++.
T Consensus 71 ~id~LhpFY~eL---idvl~d~d~~k~sLs~v~~A~---------~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~a 138 (346)
T COG1084 71 SLDDLHPFYREL---IDVLVDIDHLKISLSAVSWAS---------KIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVA 138 (346)
T ss_pred CccccChHHHHH---HHHHhCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 689999999999 999999999999999998766 4455555555 223333211 11 122346888
Q ss_pred hhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCee
Q 025346 85 SLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ 164 (254)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~ 164 (254)
++.++....+.++.... .++...+..++..+.+++.|.||+|||||++++.+.+.. +.+||+||.....+++..+..+
T Consensus 139 Siik~i~~~L~fL~~~r-~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R 216 (346)
T COG1084 139 SIIKKIDDDLEFLRKAR-DHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLR 216 (346)
T ss_pred HHHHHhhHHHHHHHHHH-HHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCce
Confidence 88888888888888886 888899999999999999999999999999999999876 8999999999999999999999
Q ss_pred EEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC----CchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----APERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~----~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++++||||+.+.+.+.++...+++..+..+..++|+|++|.+. +.+.+...+.++...+ +.|+++|+||+|..+
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~ 294 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIAD 294 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccc
Confidence 9999999999999999999999999999999999999999987 3455566666666654 389999999999998
Q ss_pred hHhHHHHHHH
Q 025346 241 PGEIAKKLEV 250 (254)
Q Consensus 241 ~~~~~~~~~~ 250 (254)
.+.+++....
T Consensus 295 ~e~~~~~~~~ 304 (346)
T COG1084 295 EEKLEEIEAS 304 (346)
T ss_pred hhHHHHHHHH
Confidence 8877766544
No 2
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.93 E-value=2.8e-27 Score=208.17 Aligned_cols=223 Identities=15% Similarity=0.227 Sum_probs=184.1
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecccccccccchHHHHHHHHhhhcccc-cCCCC----CCCCccChHhhhh
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREM-DLDDG----DEMEFDDASSFLS 85 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~----~~~~~~~~~~~~~ 85 (254)
+++|||||++| ++..|+..+++..+++++.+. ...+.++..+..+ ...|. ........+.+..
T Consensus 72 ~~~ihPfy~dL---~~~ly~~dhYk~aLgqv~~ak---------~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~t 139 (620)
T KOG1490|consen 72 LNDIHPFYADL---LNILYDRDHYKIALGQVSTAK---------HLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMAT 139 (620)
T ss_pred ccccCcchHHH---HHHHhcccHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 57899999999 999999999999999999887 4445555544222 22222 1112344578888
Q ss_pred hccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeE
Q 025346 86 LSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQM 165 (254)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~ 165 (254)
+.++....+.++.++. +++++.+..++..++++++|.+++|||||+|.+...+.. +.++++||.....++++..-.+|
T Consensus 140 v~k~q~~sl~yLeqVr-qhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrw 217 (620)
T KOG1490|consen 140 IIKRQKSSLEYLEQVR-QHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRW 217 (620)
T ss_pred HHHHhcchHHHHHHHH-HHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeee
Confidence 9999999999999998 888899999999999999999999999999999988876 89999999999999999999999
Q ss_pred EEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC----chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~----~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+++||||+.+.+.+..+...+..+.+..+.-.+|+|++|.+.. .......+ .-++....+.|+|+|+||||++.+
T Consensus 218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLf-hsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLY-HSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHH-HHhHHHhcCCceEEEeecccccCc
Confidence 9999999999999999999989989999999999999999872 23333333 345555678999999999999998
Q ss_pred HhHHHHH
Q 025346 242 GEIAKKL 248 (254)
Q Consensus 242 ~~~~~~~ 248 (254)
+.+.+.-
T Consensus 297 edL~~~~ 303 (620)
T KOG1490|consen 297 EDLDQKN 303 (620)
T ss_pred cccCHHH
Confidence 8775443
No 3
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=5.8e-24 Score=187.69 Aligned_cols=222 Identities=23% Similarity=0.223 Sum_probs=159.4
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecc---------------cccccccchHHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSN---------------EHQSLVLSEKEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.|=..|.++.-+||+|.+.++.+......-+.. .....-.+........++.-+..++|+++ +.
T Consensus 104 aR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpee-di 182 (454)
T COG0486 104 ARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQLQGALSQLINELREALLELLAQVEANIDFPEE-DI 182 (454)
T ss_pred CeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcc-cc
Confidence 567899999999999999998774432222211 11111112222233334445666889997 66
Q ss_pred CccChHhhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE
Q 025346 76 EFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~ 154 (254)
+......+....+.....+ .++..... ......+.+++++|.||+|||||+|.+++.+.+++++.|+||++.+
T Consensus 183 ~~~~~~~i~~~l~~~~~~l~~ll~~~~~------g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDvi 256 (454)
T COG0486 183 EELVLEKIREKLEELIAELDELLATAKQ------GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVI 256 (454)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhh------hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceE
Confidence 6555544444333332222 22222221 1234567899999999999999999999999999999999999999
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEe
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~n 234 (254)
...++.+|.++.++||+|+.+. ...++....+.....+..||.|+||+|++......+..+.+ ....+.|+++|.|
T Consensus 257 ee~i~i~G~pv~l~DTAGiRet-~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~~~~~i~v~N 332 (454)
T COG0486 257 EEDINLNGIPVRLVDTAGIRET-DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE---LLPKKKPIIVVLN 332 (454)
T ss_pred EEEEEECCEEEEEEecCCcccC-ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---hcccCCCEEEEEe
Confidence 9999999999999999999754 46777888888889999999999999999975555544444 2356799999999
Q ss_pred cCCCCChHh
Q 025346 235 KKDLIKPGE 243 (254)
Q Consensus 235 K~Dl~~~~~ 243 (254)
|+||..+..
T Consensus 333 K~DL~~~~~ 341 (454)
T COG0486 333 KADLVSKIE 341 (454)
T ss_pred chhcccccc
Confidence 999988654
No 4
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=6.9e-21 Score=159.72 Aligned_cols=128 Identities=48% Similarity=0.693 Sum_probs=113.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+...++++|.|++|||||+|++++.+.+++++.+.||+..+.+....+..++.|+||||+-.+ ...+...+.......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999998665 566777777888888
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|+|+||+|+.+.+..-+++..+.++. .+.|+++++||+|..++..
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHH
Confidence 999999999999999887777776666553 4689999999999998877
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.7e-20 Score=165.38 Aligned_cols=126 Identities=35% Similarity=0.500 Sum_probs=114.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
+.|+++|.||+|||||+|++++.+.+++++.|++|++...+...+.+..+.++||+|+.....+.+.....++....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999999999999999999999999999999999999998666567777888888899999
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
||+++||+|...+.+..++.+..+++ ..+.|+++|+||+|-...++
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~e~ 129 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILR--RSKKPVILVVNKIDNLKAEE 129 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEEcccCchhhh
Confidence 99999999999998888888888777 45799999999999985443
No 6
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=6.3e-21 Score=172.69 Aligned_cols=216 Identities=24% Similarity=0.231 Sum_probs=139.3
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecc---c------------ccccccchHHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSN---E------------HQSLVLSEKEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.|-..|.+.+-+||+|.+-++.+......-+.. . ......+..+....-++.-+..++|+||+ .
T Consensus 94 ~R~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~-~ 172 (442)
T TIGR00450 94 ARLAQPGEFTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDD-D 172 (442)
T ss_pred CeEcCCchhhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCC-c
Confidence 567889999999999999998874433222222 1 11111122222233334445668899864 2
Q ss_pred CccChHhhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE
Q 025346 76 EFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~ 154 (254)
+. ..+..........+ .++..+.. .....+.+++++|.+|+|||||+|++++.....+++++++|++..
T Consensus 173 ~~---~~~~~~l~~~~~~l~~ll~~~~~-------~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~ 242 (442)
T TIGR00450 173 EQ---DSLNQLLLSIIAELKDILNSYKL-------EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVV 242 (442)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHH-------HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEE
Confidence 21 12222222111111 11222210 122446789999999999999999999988777899999999988
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEe
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~n 234 (254)
...+..++.++.+|||||+.+.. ..++.........++..+|++++|+|+++.......++.... ..+.|+++|+|
T Consensus 243 ~~~i~~~g~~v~l~DTaG~~~~~-~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~---~~~~piIlV~N 318 (442)
T TIGR00450 243 EGDFELNGILIKLLDTAGIREHA-DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLN---KSKKPFILVLN 318 (442)
T ss_pred EEEEEECCEEEEEeeCCCcccch-hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHh---hCCCCEEEEEE
Confidence 88888888999999999975432 222333334455678899999999999875543333443322 24689999999
Q ss_pred cCCCCCh
Q 025346 235 KKDLIKP 241 (254)
Q Consensus 235 K~Dl~~~ 241 (254)
|+|+...
T Consensus 319 K~Dl~~~ 325 (442)
T TIGR00450 319 KIDLKIN 325 (442)
T ss_pred CccCCCc
Confidence 9999754
No 7
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=1.2e-20 Score=171.62 Aligned_cols=220 Identities=25% Similarity=0.249 Sum_probs=138.6
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecc---------------cccccccchHHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSN---------------EHQSLVLSEKEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.|-.-|.+.+.+||+|.+-++.+......-+.. ..........+.....++.-+..++|++|+..
T Consensus 102 ~r~A~pGEFt~RAflngk~dL~qaEai~~li~a~t~~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~ 181 (449)
T PRK05291 102 ARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIE 181 (449)
T ss_pred CEEccCccchHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcc
Confidence 566789999999999999997774433332222 11111111111122222333555888886443
Q ss_pred CccChHhhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE
Q 025346 76 EFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~ 154 (254)
......+..........+ .++.+.... .....+.+++++|.+|+|||||+|++++.+...+++.+++|++..
T Consensus 182 -~~~~~~i~~~i~~l~~~l~~l~~~~~~~------~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~ 254 (449)
T PRK05291 182 -FLSDEKILEKLEELIAELEALLASARQG------EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVI 254 (449)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccE
Confidence 233333333333322222 111111110 012335789999999999999999999988777889999999888
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEE
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVL 233 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~ 233 (254)
...+..++.++.+|||||+.+. ...++.........++..+|++++|+|+++...... ..+.. ..+.|+++|+
T Consensus 255 ~~~i~~~g~~i~l~DT~G~~~~-~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~ 328 (449)
T PRK05291 255 EEHINLDGIPLRLIDTAGIRET-DDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVL 328 (449)
T ss_pred EEEEEECCeEEEEEeCCCCCCC-ccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEE
Confidence 8877778889999999997542 223333333445567899999999999987543222 22221 4568999999
Q ss_pred ecCCCCChHh
Q 025346 234 NKKDLIKPGE 243 (254)
Q Consensus 234 nK~Dl~~~~~ 243 (254)
||+|+.+...
T Consensus 329 NK~DL~~~~~ 338 (449)
T PRK05291 329 NKADLTGEID 338 (449)
T ss_pred Ehhhccccch
Confidence 9999976543
No 8
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=2.4e-19 Score=153.22 Aligned_cols=128 Identities=44% Similarity=0.556 Sum_probs=98.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||+|++++.++..+++.++||+....+.....+.++.+|||||+.... ..+...+.......+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~-~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK-HSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc-chHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999988889999999988877777777889999999986542 333444445566778999
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
|++++|+|+++..... ..+...+. ..+.|+++|+||+|+..++++....
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~ 129 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQ--NLKRPVVLTRNKLDNKFKDKLLPLI 129 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHH--hcCCCEEEEEECeeCCCHHHHHHHH
Confidence 9999999998854433 33333333 2468999999999998766554433
No 9
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=1.8e-18 Score=149.40 Aligned_cols=135 Identities=47% Similarity=0.661 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+...|+++|.+|+|||||+|++++.++..+++.+.||+....+....++.++.++||||+.... ..+...+.......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~-~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK-RALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch-hHHHHHHHHHHHHHH
Confidence 4668999999999999999999999988888999999888887777667899999999986543 333444445555668
Q ss_pred cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC-ChHhHHHHHHHH
Q 025346 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEVT 251 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~-~~~~~~~~~~~~ 251 (254)
..+|++++|+|+++........+...+. ..+.|+++|+||+|+. +..++....+.+
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l 139 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEEL 139 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHH
Confidence 8999999999999865555444444443 2368999999999999 445555544443
No 10
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5e-19 Score=139.43 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=96.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..||+++|.+|+|||.|+.+|.+..+.. +.......+ .....+++...++++|||+| +.++ +..+..+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERF-------rtit~sy 78 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERF-------RTITSSY 78 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHH-------hhhhHhh
Confidence 4589999999999999999999988752 111111222 22334556678999999999 4443 3556788
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+++|++||+|+|+++ ++..+..|+.++-+....++|.++|+||||+.+...++.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~ 134 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST 134 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH
Confidence 999999999999987 788999999999888888899999999999998876654
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=2.8e-18 Score=150.95 Aligned_cols=126 Identities=39% Similarity=0.544 Sum_probs=97.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|.+|+|||||+|++++.++..+++.+.+|+....+.+..++.++.+|||||+... ...+...+.......
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~-~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP-KGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC-cccHHHHHHHHHHHH
Confidence 4556999999999999999999999998878888899988777777788889999999997543 233444444444455
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++++......+...+.. .+.|.++|+||+|+...
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc
Confidence 789999999999988777665544443332 35688899999999754
No 12
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=7.1e-18 Score=125.88 Aligned_cols=116 Identities=39% Similarity=0.534 Sum_probs=87.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||+|.+++.+...++..+++|.......+...+..+.++||||+.+.............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999977767889999998887777777888899999999876543333222334455666999
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
|+++||+|+++........+...+ ..+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l---~~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILREL---KNKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHH---HTTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH---hcCCCEEEEEcC
Confidence 999999998774333333332223 267999999998
No 13
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=7.4e-18 Score=133.35 Aligned_cols=129 Identities=25% Similarity=0.371 Sum_probs=87.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
++++++|.+|+|||||++++.+..+. +..++++|...........+..+.+|||||+.+....................
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 47999999999999999999998764 45567777776666666677899999999975422111111111112222334
Q ss_pred ccEEEEEEeCCCCc----hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 196 ADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 196 ~d~iv~vid~~~~~----~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+|++++|+|+++.. .....++..+... ..+.|+++|+||+|+...+.+.+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~ 133 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE 133 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH
Confidence 68999999998632 2333444444332 24799999999999987766543
No 14
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=4.8e-19 Score=138.08 Aligned_cols=120 Identities=33% Similarity=0.395 Sum_probs=87.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.|++|||||+|++++.+.. ++++|++|.+...+.+...+..+.++||||+.+....+.+......+.. ...+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 6899999999999999999999954 8999999999999999988999999999997554333333322222211 4789
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
|+++.|+|+++. +.......+++ ..++|+++|+||+|+....
T Consensus 80 D~ii~VvDa~~l-~r~l~l~~ql~---e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 80 DLIIVVVDATNL-ERNLYLTLQLL---ELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp SEEEEEEEGGGH-HHHHHHHHHHH---HTTSSEEEEEETHHHHHHT
T ss_pred CEEEEECCCCCH-HHHHHHHHHHH---HcCCCEEEEEeCHHHHHHc
Confidence 999999999883 32223333333 3479999999999997653
No 15
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=2.6e-17 Score=128.92 Aligned_cols=133 Identities=46% Similarity=0.657 Sum_probs=96.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++++|.+|+|||||+|++++.+.....+.+.++...........+..+.+|||||+..... .....+.......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK-KLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchH-HHHHHHHHHHHHHHH
Confidence 4689999999999999999999998776777777777776666667778899999999765432 222223334455678
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC-ChHhHHHHHHH
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEV 250 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~-~~~~~~~~~~~ 250 (254)
.+|++++|+|+++........+...+.. .+.|+++|+||+|+. ..+++.+....
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~ 136 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEK 136 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHH
Confidence 9999999999998644444444343332 368999999999998 45555444433
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.76 E-value=1.5e-17 Score=136.10 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=84.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCc-eEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t-t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.|+++|..|+|||||++++....+. ..+..| +.+.....+. +....+.+|||+| +..+. ..+..++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~-------~l~~~y~ 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFN-------SITSAYY 70 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhH-------HHHHHHh
Confidence 4899999999999999999988874 233333 2233322233 3347899999999 33322 3345668
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+++|++|+|+|+++ +++.+..|+..+.+....+.|+++|+||+|+...+++
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v 123 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc
Confidence 99999999999988 4666777776554444467999999999999765544
No 17
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.8e-17 Score=129.23 Aligned_cols=123 Identities=35% Similarity=0.467 Sum_probs=92.2
Q ss_pred EEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccE
Q 025346 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (254)
Q Consensus 119 ~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 198 (254)
+++|.+|+|||||++++++.........+++|...........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 478999999999999999987655677888888777777777788999999999765432 2333343455566788999
Q ss_pred EEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 199 iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+++|+|+.+........+...++. .+.|+++|+||+|+...+..
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~ 123 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE 123 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH
Confidence 999999987554444444444432 35899999999999887654
No 18
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.8e-18 Score=152.97 Aligned_cols=224 Identities=25% Similarity=0.254 Sum_probs=147.2
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecc---cccccccc------------hHHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSN---EHQSLVLS------------EKEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.+-+-|.++...+|.|...++.+....+.-+.. +.+..++. +.......++.-.-.++|.++...
T Consensus 154 ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l 233 (531)
T KOG1191|consen 154 IRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFGWRKILIEALAGLEARIDFEEERPL 233 (531)
T ss_pred ccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhhHHHHHHHHHhccceeechhhcCch
Confidence 345678899999999999998776655443332 22211111 222222233333344566654333
Q ss_pred CccChHhhhhhccCCcCCCCCCCchhhhhc--cccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE
Q 025346 76 EFDDASSFLSLSEKPDRNMASPDDYEIEEF--DYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR 153 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~ 153 (254)
+......+..-... ++.++. .++ .........+..++++|.||+|||||+|.+...+..++++.++||++.
T Consensus 234 ~~~~t~~~~~~~~~------l~d~v~-s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDa 306 (531)
T KOG1191|consen 234 EEIETVEIFIESLS------LLDDVL-SHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDA 306 (531)
T ss_pred hhccchhhhhHHHH------HHHHHH-HHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhh
Confidence 32222211111111 111111 111 111223345678999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc----hhHHHHHHHhhcccC-----
Q 025346 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHK----- 224 (254)
Q Consensus 154 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~----~~~~~~~~~~~~~~~----- 224 (254)
+...++..|+++.++||+|+.+.....++....+.....+..+|+|++|+|+..+. ..+...+...-....
T Consensus 307 iea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~ 386 (531)
T KOG1191|consen 307 IEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNK 386 (531)
T ss_pred heeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecc
Confidence 99999999999999999999886667777777788888899999999999994422 222333333222111
Q ss_pred -CCCCEEEEEecCCCCCh
Q 025346 225 -DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 225 -~~~piivV~nK~Dl~~~ 241 (254)
.+.|++++.||.|+..+
T Consensus 387 ~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 387 MEKQRIILVANKSDLVSK 404 (531)
T ss_pred ccccceEEEechhhccCc
Confidence 34799999999999876
No 19
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.8e-17 Score=130.39 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=97.7
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
..+..|++++|..++||||||++++...+. ..|..|- .+-. .-.+.+..+++++|||+| ++++.. .
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrs-------l 87 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRS-------L 87 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc--ccccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhh-------h
Confidence 344579999999999999999999998875 3333322 2222 223445578999999999 554444 4
Q ss_pred HHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCC-CCEEEEEecCCCCChHhHHHHH
Q 025346 189 VRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~-~piivV~nK~Dl~~~~~~~~~~ 248 (254)
...|++++.++|.|+|+++ +++....|+.........+ .-+++|+||.||.++++++...
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE 150 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE 150 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH
Confidence 5567999999999999987 7889999999998887764 7789999999999998876543
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=2.4e-17 Score=151.23 Aligned_cols=124 Identities=29% Similarity=0.383 Sum_probs=98.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.++|+++|.+|+|||||+|++++.....+.+.+++|++.........+..+.+|||||+... ...+...+...+..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~-~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD-AKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc-chhHHHHHHHHHHHHHH
Confidence 46899999999999999999999887778889999998888877888889999999997532 23344445556667789
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++........+...++ ..+.|+++|+||+|+...
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~--~~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLR--RSGKPVILAANKVDDERG 161 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCcc
Confidence 999999999999865544444444444 357899999999999653
No 21
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.7e-18 Score=133.00 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=95.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...|++++|.+++|||||+.++...+|... ..+..... .....+....+++.||||+| +++++++.+++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slapMY------ 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAPMY------ 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEEEeCCcEEEEEEEEcCC--cccccccccce------
Confidence 346899999999999999999999988632 12222211 22223344568899999999 66677776654
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+++|+++|+|+|+++ ++...+.|+.++.+...+++-+.+|+||+||...+++.
T Consensus 75 -yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~ 129 (200)
T KOG0092|consen 75 -YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVE 129 (200)
T ss_pred -ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccccc
Confidence 899999999999988 67889999999888877888889999999999866654
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.75 E-value=1.7e-17 Score=131.45 Aligned_cols=129 Identities=26% Similarity=0.268 Sum_probs=88.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCe-eEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.|+++|.+|+|||||+|++.+... .++..+++|.....+.....+. .+.+|||||+.+..... + .....+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~-~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG-K-GLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc-C-CchHHHHHHHHh
Confidence 489999999999999999998665 3666677776666665555555 89999999975322110 0 111223344567
Q ss_pred ccEEEEEEeCCCC---chhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHhHHHHH
Q 025346 196 ADCIVVLVDACKA---PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 196 ~d~iv~vid~~~~---~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
+|++++|+|+++. .+....+...+.... ..+.|+++|+||+|+.+.....+..
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 136 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELL 136 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHH
Confidence 9999999999875 344555555443322 1368999999999998776654433
No 23
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=5.6e-17 Score=126.27 Aligned_cols=123 Identities=33% Similarity=0.419 Sum_probs=91.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.+++++|++|+|||||++++.+.......+.++++...........+.++.+|||||+.+... .............+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED-EIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc-hHHHHHHHHHHHHHhh
Confidence 479999999999999999999988766777888888777666777788999999999765432 2222222344456789
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+|++++|+|+++............ ..+.|+++|+||+|+.+...
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCccc
Confidence 999999999997444333222211 35789999999999986543
No 24
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.1e-17 Score=129.07 Aligned_cols=124 Identities=20% Similarity=0.275 Sum_probs=98.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..|++++|..|+|||+|+.++..+.|..+.+.. +..-......++....++++|||+| ++. +..-..+++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~-------frsv~~syY 76 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QES-------FRSVTRSYY 76 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHH-------HHHHHHHHh
Confidence 458999999999999999999999986544421 1111223345667788999999999 333 335566789
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+++-++++|+|+++ ++..+..|+.++.+....|.-+++++||+||...+++++.
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~E 132 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKE 132 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHH
Confidence 99999999999987 6788999999988877789999999999999988877544
No 25
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.74 E-value=4.1e-17 Score=143.92 Aligned_cols=130 Identities=27% Similarity=0.300 Sum_probs=92.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..++|+++|.+|+|||||+|++++.+. .+.+.+++|.+.....+.. ++..+.+|||||+...........+ ......
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHH
Confidence 347899999999999999999999874 4678888888877766665 5679999999997443222222223 334456
Q ss_pred ccCccEEEEEEeCCCCchhH-HHHHHHhhccc-CCCCCEEEEEecCCCCChHhHH
Q 025346 193 GINADCIVVLVDACKAPERI-DEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+..+|++++|+|++++.... ...+..++... ..+.|+++|+||+|+.+..++.
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~ 320 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE 320 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH
Confidence 88999999999998754221 11122223322 2468999999999998765543
No 26
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1e-16 Score=126.71 Aligned_cols=125 Identities=27% Similarity=0.346 Sum_probs=89.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||||++++++.......+.++++...........+..+.+|||||+.+... ..++..........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4579999999999999999999987655677778877766666666777899999999754421 11112111223345
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+.++.......+..... ..+.|+++|+||+|+...
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLIL--EEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHH--hcCCCEEEEEeccccCCc
Confidence 67999999999998865443322222222 246899999999999876
No 27
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=6.8e-17 Score=126.81 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=85.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++++.++. ....+.++.+.....+..++ ..+.+|||||. ..+ ...+..++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~-------~~~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERF-------RSLIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHH-------HHHHHHHhc
Confidence 7999999999999999999998875 34455555554444444333 57999999993 222 123445678
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++ +++....++..+......+.|+++|+||+|+...
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 9999999999987 3566677777766555457999999999999543
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.74 E-value=4.1e-17 Score=129.13 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=83.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE---EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~---~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+++++|++|+|||||++++...++. ..++++..... ....++....+.+|||||. ..+ ...+..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~-------~~~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERF-------RAVTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHH-------HHHHHHH
Confidence 47999999999999999999988764 33443332221 1223344567899999993 222 1233456
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++.++++++|+|+++ ++..+..|+..+.....++.|+++|+||+|+..+.+
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~ 124 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD 124 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 889999999999987 446666777666554456789999999999976543
No 29
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=127.09 Aligned_cols=136 Identities=27% Similarity=0.366 Sum_probs=102.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh-hhhH---HH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDS---MM 185 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~---~~ 185 (254)
+....+-|+++|.+++|||||||.+++++ .++++..||.|+......++.. +.++|.||++-.... .... ..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 44567789999999999999999999966 7889999999988776555433 889999998754321 1111 22
Q ss_pred HHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
...+...-....+++.++|+.++....+....+++. ..++|+++|+||+|.+...+..+.+..+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~--~~~i~~~vv~tK~DKi~~~~~~k~l~~v 160 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLL--ELGIPVIVVLTKADKLKKSERNKQLNKV 160 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHH--HcCCCeEEEEEccccCChhHHHHHHHHH
Confidence 233444444678999999999988888877777666 3589999999999999987765544433
No 30
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.74 E-value=4.5e-17 Score=130.41 Aligned_cols=115 Identities=24% Similarity=0.238 Sum_probs=80.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++..+.+. ..+.+|........ ..+....+.+|||+|. ..+..+ ...++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhh-------hhhhc
Confidence 47999999999999999999988873 34555544333222 2333467899999994 333222 22357
Q ss_pred cCccEEEEEEeCCCC--chhHHH-HHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA--PERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++. ++.+.. |+..+.. ...+.|+++|+||+|+....
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~-~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEECHhhhhCh
Confidence 899999999999873 445543 5444433 34579999999999997653
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=3.7e-17 Score=148.52 Aligned_cols=124 Identities=35% Similarity=0.448 Sum_probs=101.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||+|++++...+.+.+.+++|++.......+.+..+.+|||||+.... ..+...+...+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD-DGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc-hhHHHHHHHHHHHHHhhC
Confidence 4899999999999999999998877788999999988888888888999999999975432 334455556677788999
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
|++++|+|+..+.......+...++. .+.|+++|+||+|+...+.
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDA 124 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccc
Confidence 99999999998766666555555543 4689999999999986543
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=8.6e-17 Score=127.09 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=81.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++....+..... +..+.+.....+... ...+.+|||||. ..+ ......+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~-------~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERF-------RTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCCh--HHH-------HHHHHHH
Confidence 3689999999999999999999877642221 222222222223333 367899999993 221 1234455
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++.+|++++|+|+++. ++.+..|+..+......+.|+++|+||+|+...+
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 7899999999999883 4556667776655445679999999999997553
No 33
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.73 E-value=6e-17 Score=132.25 Aligned_cols=123 Identities=23% Similarity=0.319 Sum_probs=81.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|.+|+|||||++++.+.++... ..|.++....... .++....+.+|||||....... ............+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~-~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT-AGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc-chhHHHHHHHhhhc
Confidence 799999999999999999999887532 2333332322222 2333467899999996432211 11111122334578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc---CCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++. ++....++..+.... ..++|+++|+||+|+...
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 99999999999874 444555655554432 367999999999999654
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=6.6e-17 Score=141.60 Aligned_cols=126 Identities=29% Similarity=0.306 Sum_probs=95.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..|+++|.+++|||||+|++...+.. ++++++||.....+.+.. +..++.+|||||+.+..... ..+...+...+.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccHHHHHHHHhh
Confidence 46999999999999999999987754 789999999998888876 56789999999986543221 112245556678
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccC--CCCCEEEEEecCCCCChHhH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~--~~~piivV~nK~Dl~~~~~~ 244 (254)
.++++++|+|+++. .+....|..++..... .+.|+++|+||+|+.+..++
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence 99999999999863 4555555555443322 46899999999999876543
No 35
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=2.5e-16 Score=126.49 Aligned_cols=134 Identities=27% Similarity=0.335 Sum_probs=88.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh-hhHHHHH-
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMK- 187 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~- 187 (254)
+..+.++++++|.+|+|||||+|++.+.. ...+++.+++|........+ ..+.+|||||+....... ....+..
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 44567799999999999999999999876 45566677777665433332 369999999975432111 1111111
Q ss_pred --HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHH
Q 025346 188 --NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 188 --~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
.+......++++++|+|+++........+...+. ..+.|+++|+||+|+..+.+.....+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~~~~~~ 152 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLR--ERGIPVLIVLTKADKLKKSELNKQLK 152 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCCHHHHHHHHH
Confidence 2222234578999999998865555444333333 24689999999999987655444333
No 36
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=9.3e-17 Score=146.13 Aligned_cols=122 Identities=34% Similarity=0.449 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
++|+++|.+|+|||||+|++.+.....+.+.+++|++.........+..+.+|||||+.... .............++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD-DGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 57999999999999999999998877788899999888888788888999999999986522 22334444556667889
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+|++++|+|++++.......+..+++. .+.|+++|+||+|+..
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~ 123 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPD 123 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCcc
Confidence 999999999988766555555444443 3789999999999765
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=1.1e-16 Score=126.59 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=81.4
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+++++|.+|+|||||++++.+.++.. .+.++.. ... ....+.....+.+|||||. ..+. ..+..+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~-------~~~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYR-------TITTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHH
Confidence 479999999999999999999988642 2222221 111 1122334478999999993 2221 234566
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++.++++++|+|.++ +++.+..|+..+.+....+.|+++|+||+|+...+
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 899999999999987 34556677766655444578999999999997654
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=7.2e-17 Score=126.85 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=81.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++....+. ..+.+|+........ ++....+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchH-------HHHHh
Confidence 47999999999999999999988763 334444433322222 333467889999994 333322 33457
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+.++++++|+|+++ +++....++..+.... ..+.|+++|+||+|+.+.+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 88999999999987 3455666666554432 3578999999999997643
No 39
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=1.7e-16 Score=125.99 Aligned_cols=117 Identities=22% Similarity=0.234 Sum_probs=82.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++.+. +. ..+.+|. ......+...+..+.+|||||. .. +...+..++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~--~~~~~t~-g~~~~~~~~~~~~~~i~D~~G~--~~-------~~~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IP--KKVAPTV-GFTPTKLRLDKYEVCIFDLGGG--AN-------FRGIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CC--ccccCcc-cceEEEEEECCEEEEEEECCCc--HH-------HHHHHHHHHcCC
Confidence 3789999999999999999876 21 2222221 1223344557789999999993 22 223355678999
Q ss_pred cEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHHH
Q 025346 197 DCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 197 d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
|++++|+|+++. +.....++..+.+.. ..+.|+++|+||+|+.......+
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~ 120 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH
Confidence 999999999874 455566676665542 25789999999999987654333
No 40
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=1.1e-16 Score=125.81 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=81.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||||++++++..+ ...+++++....... .++....+.+|||||.. .+.. ....+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~ 70 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE--EFSA-------MREQY 70 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc--chhH-------HHHHH
Confidence 35899999999999999999998765 344444544333332 33334678999999943 2222 23345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +.....++..+.+.. ..+.|+++|+||+|+....
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence 7789999999999873 345556665554432 3578999999999997654
No 41
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.72 E-value=1.4e-16 Score=126.29 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=81.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|++|+|||||++++.+.++.. ...+..+...... ...+....+.+|||||. ..+. .....+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~-------~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFR-------TITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHH-------HHHHHH
Confidence 3589999999999999999999887642 2222222222222 22333467899999993 2222 223455
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++ ++..+..|+..+......+.|+++|+||+|+.+..
T Consensus 73 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 789999999999987 34556666666655444678999999999998543
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.72 E-value=1.6e-16 Score=125.61 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=82.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|++|+|||||++++.+.++.. ...++.+.......+ .+....+.+|||||. ..+ ......++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~-------~~~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERF-------RTITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhH-------HHHHHHHh
Confidence 589999999999999999999887652 222333322222222 333467899999993 222 12334567
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+.+|++++|+|+++ ++..+..|+..+......+.|+++|+||+|+....
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 89999999999987 45566677766554444678999999999997654
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=1.8e-16 Score=125.02 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=81.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++.+.++.. ...+..+.......+. +....+.+|||||. ..+. .....++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYR-------AITSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHH-------HHHHHHH
Confidence 589999999999999999999887652 2233333333232333 33357899999993 2222 2233457
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..++++++|+|+++ ++..+..|+..+......+.|+++|+||+|+...+
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 88999999999986 34556667666555444568999999999997543
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=1.5e-16 Score=126.27 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=82.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE--EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++.+.++..... +..+... ...........+.+|||||. ..+ ......++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~-------~~~~~~~~ 74 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESF-------RSITRSYY 74 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCc--HHH-------HHHHHHHh
Confidence 589999999999999999999887643222 2222222 22233344568999999993 221 22334567
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++ ++..+..|+..+.....++.|+++|+||+|+..+.
T Consensus 75 ~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~ 125 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125 (168)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 89999999999987 45566677766655445689999999999997543
No 45
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.1e-16 Score=142.84 Aligned_cols=130 Identities=26% Similarity=0.290 Sum_probs=94.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.|+++|.+|+|||||+|++++.+. .++++|+||+....+.+...+ ..+.++||||+....... ......+...+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~--~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG--AGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch--hhHHHHHHHHHHh
Confidence 699999999999999999998875 589999999999999887764 469999999986543221 1122334456889
Q ss_pred ccEEEEEEeCCC-----CchhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHhHHHHHH
Q 025346 196 ADCIVVLVDACK-----APERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 196 ~d~iv~vid~~~-----~~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
++++++|+|++. .......+..++.... ..+.|+++|+||+|+....++.+...
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~ 298 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAK 298 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHH
Confidence 999999999872 2233344444433321 13689999999999987766544433
No 46
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.72 E-value=1.2e-16 Score=127.56 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=80.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++...++. ..+.++...... ...++....+.+|||||. ..+.. .+..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTA-------MRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHH-------HhHHHh
Confidence 57999999999999999999988774 233333332222 233344567999999993 33222 233457
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChHhH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~~~ 244 (254)
..+|++++|+|+++ ++.....|+..+.+. ...+.|+++|+||+|+...+++
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v 125 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQV 125 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCcc
Confidence 88999999999987 345555554443332 2357999999999999765443
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=2.1e-16 Score=143.62 Aligned_cols=131 Identities=27% Similarity=0.321 Sum_probs=97.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~ 191 (254)
...+++++|.+|+|||||+|++++.+...+++.+++|.+.....+...+..+.+|||||+..... +.++.........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 34689999999999999999999988766888999999888777777778999999999754321 1122222233445
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC-ChHhHHH
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAK 246 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~-~~~~~~~ 246 (254)
.+..+|++++|+|++++.......+..... ..+.|+++|+||+|+. +.+...+
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~--~~~~~iiiv~NK~Dl~~~~~~~~~ 304 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLIL--EAGKALVIVVNKWDLVKDEKTREE 304 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEECcccCCCHHHHHH
Confidence 688999999999999876655544333332 2468999999999998 4443333
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=1.5e-16 Score=125.65 Aligned_cols=118 Identities=20% Similarity=0.231 Sum_probs=79.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccc---cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+++++|++|+|||||++++.+.... .......+|.......+..++..+.+|||||... + ...+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--~-------~~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES--L-------RSLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh--h-------HHHHHHHh
Confidence 4889999999999999999864321 0111223333333444556688999999999432 1 12344568
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
..+|++++|+|+++. ......++..+.+.. ..+.|+++|+||+|+.....
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~ 124 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS 124 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC
Confidence 899999999999874 334445555544432 25799999999999976543
No 49
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.72 E-value=2.9e-16 Score=124.86 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+|+++|.+|+|||||++++....+.. ..|+++... .........+.+|||||. ..+. ..+..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~--~~~t~g~~~--~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIPTVGFNV--ETVTYKNVKFNVWDVGGQ--DKIR-------PLWRHYY 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc--ccCCcccce--EEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 35689999999999999999998766532 222222221 233456788999999994 2221 2234568
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
..+|++++|+|+++ ++.....++...+... ..+.|+++|+||+|+..
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 89999999999988 3555666666665432 25689999999999864
No 50
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.72 E-value=1.4e-16 Score=129.38 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=81.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||||+.++..+.+. ..+.+|....... .+++....+.+|||+| +..+..+ ...+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l-------~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRL-------RTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhh
Confidence 358999999999999999999988774 2333343332221 2344457899999999 4433333 3345
Q ss_pred ccCccEEEEEEeCCC--CchhHHH-HHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACK--APERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++++|++|+|+|+++ +++.+.. |...+.. ...+.|+++|+||+||.+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~-~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCH-HCPNVPILLVGTKKDLRND 122 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEeChhhhcC
Confidence 889999999999987 3555643 4444433 3467999999999999654
No 51
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=7e-17 Score=130.90 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=79.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|.+|+|||||++++....+. ..+++++...... ..++....+.+|||||. ..+.. ....++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTA-------LRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHH-------HHHHHHH
Confidence 4899999999999999999987764 3344444322222 23344456899999993 22222 2334678
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc---CCCCCEEEEEecCCCCChHh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|++++|+|+++. +..+..++..+.... ..+.|+++|+||+|+.+.+.
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~ 123 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE 123 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc
Confidence 99999999999873 455666665554332 25789999999999965433
No 52
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.71 E-value=2.4e-16 Score=129.06 Aligned_cols=129 Identities=27% Similarity=0.350 Sum_probs=84.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..++++++|.+|+|||||+|++.+..+. +.+.+++|...........+ ..+.+|||||+...........+.. ....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TLEE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HHHH
Confidence 3468999999999999999999998753 44445555554444444434 3899999999754322222222222 2334
Q ss_pred ccCccEEEEEEeCCCCchh--HHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHH
Q 025346 193 GINADCIVVLVDACKAPER--IDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~--~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+..+|++++|+|+++.... ...+. ..+... ..+.|+++|+||+|+.......
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~-~~l~~~~~~~~~viiV~NK~Dl~~~~~~~ 172 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVE-KVLKELGAEDIPMILVLNKIDLLDDEELE 172 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHH-HHHHHcCcCCCCEEEEEEccccCChHHHH
Confidence 6789999999999874322 22222 222222 2468999999999998765543
No 53
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.71 E-value=1.2e-16 Score=126.45 Aligned_cols=117 Identities=24% Similarity=0.254 Sum_probs=78.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++++..+.. .+.++... ......+.....+.+|||||.. .+..+ ...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~-------~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSH--QFPAM-------QRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCC--cchHH-------HHHHh
Confidence 479999999999999999999887642 22222221 1122234445779999999953 22222 22346
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcc---cCCCCCEEEEEecCCCCChHh
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~---~~~~~piivV~nK~Dl~~~~~ 243 (254)
..++++++|+|+++ ++..+..++..+... ...+.|+++|+||+|+.+.++
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~ 125 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE 125 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe
Confidence 78999999999987 344555555443322 225799999999999976443
No 54
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.71 E-value=2.1e-16 Score=128.05 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+|+++|..|+|||||+.++....+. ..+. ..+...... .+++....+.+|||+|. ..+. ..+..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~-------~l~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--GRFC-------TIFRS 74 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 468999999999999999999987664 2222 222222222 23344578999999993 3222 23445
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+++.+|++++|+|+++ +++.+..|+.++... .++.|++||+||+|+...+.
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccC
Confidence 6789999999999987 567777787776543 36899999999999976433
No 55
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=9.5e-17 Score=130.03 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=79.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++.+..+.. .+.++...... ...++....+.+|||||. ..+..+ ...++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQ--EEFDRL-------RSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCC--hhcccc-------ccccc
Confidence 379999999999999999999987742 22233222222 223344568999999994 322222 22347
Q ss_pred cCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 194 INADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
..++++++|+|+++. +..+. .|+..+.. ...+.|+++|+||+|+.+..+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~-~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIRE-HCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhccChh
Confidence 899999999999884 44444 35555443 345799999999999987654
No 56
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.8e-16 Score=128.65 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=80.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+|||||++++.+..+. ...+++++. .... ..+++....+.+||||| +..+. .....++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~-------~~~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFR-------SVTHAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHH-------HhhHHHc
Confidence 7999999999999999999988764 223333332 2211 22334457899999999 32221 2234567
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++. ++.+..|+..+......+.|+++|+||+|+..+
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE 121 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc
Confidence 899999999999873 455666666665544457899999999999754
No 57
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.3e-16 Score=127.50 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=95.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCc-eEE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t-t~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (254)
+.....+++++|.+++|||+++.+|....+. ..+..| ..+ .....+++....+++|||+| +++ +..
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~--~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qer-------f~t 76 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN--TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QER-------FRT 76 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCc--CCccceEEEEEEEEEEEeCCeEEEEEEEEccc--chh-------HHH
Confidence 3445679999999999999999999988874 222211 111 22233455667899999999 443 335
Q ss_pred HHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 188 NVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
.+.+|+++|+++++|+|+++ +++.+..|+..+-+....+.|+++|+||+|+..++++..
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~ 137 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSK 137 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccH
Confidence 56788999999999999987 678888888877776667899999999999999777653
No 58
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=1.7e-16 Score=128.25 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=81.4
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++.+..+.. ...+..+.+.. ....++....+.+|||||. ..+. ..+..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~-------~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFR-------SLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHH-------hhHHHHc
Confidence 379999999999999999999887742 11222222222 2223344567899999993 2221 2344568
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++ ++..+..|+..+......+.|+++|+||+|+.+..
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 89999999999987 34556667666655445568999999999998544
No 59
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.71 E-value=1.5e-16 Score=130.01 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=81.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEEEEEe-------cCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICS-------GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~~~~~-------~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
+|+++|.+|+|||||++++....+.. .+.+|.. ........ .....+.+|||+| +..+..+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l------- 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKST------- 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHH-------
Confidence 79999999999999999999987642 2322221 11111111 2346799999999 3333322
Q ss_pred HHHHccCccEEEEEEeCCC--CchhHHHHHHHhhccc-------------------CCCCCEEEEEecCCCCChHh
Q 025346 189 VRSAGINADCIVVLVDACK--APERIDEILEEGVGDH-------------------KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-------------------~~~~piivV~nK~Dl~~~~~ 243 (254)
...++.+++++|+|+|+++ +++.+..|+.++.... ..++|+++|+||+|+.+.+.
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 3345889999999999988 4667778877765421 24689999999999987653
No 60
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.71 E-value=1.9e-16 Score=125.36 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=82.2
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 197 (254)
|+++|.+|+|||||++++.+..+. ..+.+|... ....++..+..+.+|||||. ..+. ..+..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~-~~~~i~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGF-NSVAIPTQDAIMELLEIGGS--QNLR-------KYWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCc-ceEEEeeCCeEEEEEECCCC--cchh-------HHHHHHHhhCC
Confidence 789999999999999999987653 223223221 12334566789999999994 2222 23345688999
Q ss_pred EEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 198 CIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 198 ~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
++++|+|+++. +.....++..+.... .++|+++|+||+|+.....+++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~ 119 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQE 119 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHH
Confidence 99999999884 345556666655432 6799999999999987655543
No 61
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.71 E-value=2e-16 Score=124.61 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=79.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|++|+|||||++++.+.++.. ...+..+.+.. .....+....+.+|||||. ..+. .....++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYL-------EVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHH-------HHHHHHhc
Confidence 79999999999999999999988642 22222222221 2223345678999999994 2211 23345578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccC-----CCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK-----DKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-----~~~piivV~nK~Dl~~ 240 (254)
.++++++|+|.++. +.....|+..+.+... .+.|+++|+||+|+..
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 99999999999873 4556666666655433 4689999999999974
No 62
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=2.6e-16 Score=124.10 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=81.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++....+. ....+....+.....+ ......+.+|||||. ..+.. ....++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~-------~~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQT-------ITKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHh-------hHHHHhc
Confidence 6999999999999999999988774 2222222222222222 333467899999993 32222 2334578
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|++++|+|+++ +++.+..|+..+......+.|+++|+||+|+...+.
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 9999999999987 456667777666554445789999999999976554
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.71 E-value=1.9e-16 Score=123.98 Aligned_cols=115 Identities=22% Similarity=0.197 Sum_probs=79.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++.+..+. ..+.+++....... ++.....+.+|||||. ..+.. .+..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSA-------MRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHH-------HHHHHH
Confidence 47999999999999999999988763 33444443333322 3333456889999994 32222 233467
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..++++++|+|.++. +.....++..+.+.. ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 889999999999873 345555665555432 357899999999999763
No 64
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=2.5e-16 Score=150.93 Aligned_cols=124 Identities=31% Similarity=0.414 Sum_probs=102.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.++|+++|.+|+|||||+|++++.+...+.+.+++|++.......+.+..+.+|||||+... ...+...+..+...++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD-VEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC-CccHHHHHHHHHHHHHH
Confidence 46899999999999999999999888778899999999888887888889999999997632 23455556667777889
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|++++....+..+...++ ..+.|+++|+||+|+...
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr--~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLR--RAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECcccccc
Confidence 999999999999877666655555444 357999999999999754
No 65
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.8e-16 Score=144.18 Aligned_cols=128 Identities=25% Similarity=0.310 Sum_probs=94.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
..|+++|.+|+|||||+|++.+.+.. ++++|+||.....+.+...+.++.++||||+...... ...+...+...+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 47999999999999999999988765 6899999999999988888889999999998643211 11122334556788
Q ss_pred ccEEEEEEeCCC------CchhHHHHHHHhhccc-----------CCCCCEEEEEecCCCCChHhHHH
Q 025346 196 ADCIVVLVDACK------APERIDEILEEGVGDH-----------KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 196 ~d~iv~vid~~~------~~~~~~~~~~~~~~~~-----------~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
++++++|+|+++ +......+..++.... ..+.|+++|+||+|+.+..++.+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e 304 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE 304 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence 999999999974 2223333332332211 24689999999999987655543
No 66
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.71 E-value=4.6e-16 Score=122.15 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccc--cCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~--~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.++++|.+|+|||||++++.+...... ...+++|........... +..+.+|||||... +...+...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~---------~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK---------FIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH---------HHHHHHhhh
Confidence 589999999999999999997532211 223455555444444444 67899999999421 223344567
Q ss_pred cCccEEEEEEeCCCCchhH-HHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++..... ...+. ..... ...|+++|+||+|+....
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~-~~~~~-~~~~~ilv~NK~Dl~~~~ 120 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLE-ILELL-GIKRGLVVLTKADLVDED 120 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHH-HHHHh-CCCcEEEEEECccccCHH
Confidence 8999999999998743222 22222 22211 224999999999998764
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.71 E-value=2.8e-16 Score=123.52 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=80.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++.+.++... ..+..+.... ....+.....+.+|||||.. .+ ......++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--~~-------~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE--RF-------RSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEECcchH--HH-------HHhHHHHhc
Confidence 799999999999999999998876422 2222222222 22233444678999999942 21 123345578
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+|++++|+|+++ ++..+..++..+.....++.|+++|+||+|+....
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 9999999999988 34556667666544445789999999999997643
No 68
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=1.5e-16 Score=125.53 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=81.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++....+. ..+++++.......+ .+....+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAM-------RDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhH-------HHHHH
Confidence 47999999999999999999977653 344455543333223 333567889999994 333332 33457
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|.++ +++....++..+.... ..+.|+++|+||+|+...
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 88999999999976 3455666766665432 367999999999999754
No 69
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.71 E-value=1.4e-16 Score=128.41 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+++++|.+|+|||||++++....+. ..+.+|....... .++.....+.+|||+| +..+..+ ...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~-------~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNV-------RPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhh-------hhh
Confidence 3468999999999999999999998774 3444443332222 2344557899999999 4333332 234
Q ss_pred HccCccEEEEEEeCCC--CchhH-HHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACK--APERI-DEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+++++|++++|+|+++ +++.+ ..|+..+.. ..++.|+++|+||+||..
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEeEChhhhc
Confidence 5889999999999988 45555 456555544 346799999999999854
No 70
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.71 E-value=1.7e-16 Score=138.93 Aligned_cols=131 Identities=27% Similarity=0.316 Sum_probs=95.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..|+++|.+++|||||++++...+.. ++++++||..+..+.+...+ .++.++||||+....... ..+...+...+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccHHHHHHHHHH
Confidence 46999999999999999999987654 78899999888888777665 889999999986433211 112234455578
Q ss_pred CccEEEEEEeCCCC-----chhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHhHHHHHH
Q 025346 195 NADCIVVLVDACKA-----PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 195 ~~d~iv~vid~~~~-----~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
.++++++|+|+++. .+....+..++.... ..+.|+++|+||+|+..++...+..+
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~ 296 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLK 296 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHH
Confidence 89999999999853 234444444433321 14689999999999987765544433
No 71
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=4.8e-16 Score=141.45 Aligned_cols=132 Identities=26% Similarity=0.314 Sum_probs=99.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh--hhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~ 191 (254)
...+++++|.+|+|||||+|++++.....+++.+++|++.....+...+..+.+|||||+...... .++.........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 467999999999999999999999887668889999999887777778888999999997543211 122222233445
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
.+..+|++++|+|++.+.......+..... ..+.|+++|+||+|+.+++...+.
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~ 305 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLAL--EAGRALVIVVNKWDLVDEKTMEEF 305 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCcEEEEEECccCCCHHHHHHH
Confidence 678999999999999876655544443333 246899999999999866544433
No 72
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.71 E-value=3.4e-16 Score=122.99 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=79.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|++|+|||||++++.+..+. ....+..+......... .....+.+|||||. ..+. .....++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFR-------SITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHHHHhC
Confidence 7999999999999999999988763 22223323222222222 33367899999993 2211 23345578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++. ++.+..|+..+......+.|+++|+||+|+...
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 89999999999873 344555666655544468999999999999764
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=1.6e-16 Score=125.21 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=78.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|++|+|||||++++.+..+. ..+.+++.+... ...+.....+.+|||||.. .+..+ ...++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~~-------~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE--EFSAM-------RDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcc--cchHH-------HHHHHh
Confidence 7999999999999999999987764 233333332222 2233445688999999943 22222 234577
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
.++++++|+|+++. +.....+...+.+.. ..+.|+++|+||+|+....
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 89999999999873 345555555544332 2468999999999997643
No 74
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=4.5e-16 Score=124.07 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=81.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
....+++++|++|+|||||++++.+..+.... +|.. ........++..+.+|||||.. .+ ...+..+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~---~t~g-~~~~~~~~~~~~l~l~D~~G~~--~~-------~~~~~~~ 78 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTIS---PTLG-FQIKTLEYEGYKLNIWDVGGQK--TL-------RPYWRNY 78 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcC---Cccc-cceEEEEECCEEEEEEECCCCH--HH-------HHHHHHH
Confidence 44578999999999999999999987543222 2211 1122233457889999999942 21 1234456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +.....++..++.. ...+.|+++|+||+|+....
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 8899999999999884 44455556555432 23679999999999997643
No 75
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=3.2e-16 Score=123.05 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=77.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++.+.... ...+.+|.. .........+..+.+|||||.. .+. ..+..++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~~~t~g-~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~~~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQIIVPTVG-FNVESFEKGNLSFTAFDMSGQG--KYR-------GLWEHYYKNI 69 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-cceecCccc-cceEEEEECCEEEEEEECCCCH--hhH-------HHHHHHHccC
Confidence 4789999999999999999986532 122222221 1122344567889999999942 221 2344567899
Q ss_pred cEEEEEEeCCCCc--hhHHHHHHHhhccc---CCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~~--~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++.. .....++..+.+.. ..+.|+++|+||+|+...
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999998743 33445555544421 257999999999999764
No 76
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=1.9e-16 Score=125.36 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=78.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE-EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
+++++|.+|+|||||++++....+.. .++.+.... ....+......+.+|||||..... ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQDR---------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchhhh---------HHHhhhccc
Confidence 79999999999999999999987742 233322211 122334566789999999953221 223344688
Q ss_pred ccEEEEEEeCCCCc--hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 196 ~d~iv~vid~~~~~--~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+|++++|+|+++.. +.+...+...++....+.|+++|+||+|+.+...
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 99999999998743 3333333333333345799999999999976543
No 77
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=1.4e-16 Score=127.86 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++.+..+. ..+.+|....... .++.....+.+|||+| +..+..+ ...++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNV-------RPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhc-------chhhc
Confidence 47999999999999999999988774 3344443322222 2344557899999999 3333332 22357
Q ss_pred cCccEEEEEEeCCC--CchhH-HHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACK--APERI-DEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+.+|++++|+|+++ +++.+ ..|+..+.+ ..++.|+++|+||+||..
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~-~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQE-FCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHH-HCCCCCEEEEEEChhhhc
Confidence 89999999999987 45554 456655543 346799999999999854
No 78
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.70 E-value=3.4e-16 Score=124.42 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=81.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|.+|+|||||++++.+..+. . +.+| ...........+..+.+|||||.... ...+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~T-~~~~~~~~~~~~~~i~l~Dt~G~~~~---------~~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIPT-IGFNVETVEYKNLKFTIWDVGGKHKL---------RPLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCCc-CceeEEEEEECCEEEEEEECCCChhc---------chHHHHHhccC
Confidence 5889999999999999999987543 2 2222 22222345567889999999994321 12344567899
Q ss_pred cEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 999999999873 566667777766543 245899999999999654
No 79
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.70 E-value=2.4e-16 Score=130.67 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=81.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++....+. ..+.+|...... ..+++....+.+|||+| +..+..+ ...++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l-------~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNV-------RPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHH-------hHHhc
Confidence 47999999999999999999988774 334444332222 23344567899999999 3333333 22458
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++. ++.+...|...+....++.|+++|+||+|+...
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc
Confidence 999999999999884 455544444444445578999999999999653
No 80
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=2e-16 Score=124.60 Aligned_cols=115 Identities=23% Similarity=0.221 Sum_probs=79.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++....+. ..+.++...... ...++....+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccch-------HHHHH
Confidence 47999999999999999999988764 223333322222 223344456889999994 333333 23457
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++ ++.....++..+.... ..+.|+++|+||+|+...
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 88999999999988 3456666665555432 257999999999999654
No 81
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.70 E-value=3.4e-16 Score=124.70 Aligned_cols=115 Identities=24% Similarity=0.343 Sum_probs=81.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+|||||++++.++.+. ..+.+|.. ..... ...+....+.+|||||. ..+. .....++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ--ERFK-------CIASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh--HHHH-------hhHHHHh
Confidence 6899999999999999999998774 33333332 22222 22344568999999993 3222 2234558
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+.+|++++|+|+++ ++.....|+..+.+.. ..+.|+++|+||+|+.+..
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 89999999999987 5666777777665443 3357899999999996543
No 82
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=5.2e-16 Score=124.94 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=82.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+++++|.+++|||||++++....+.. ..|.... ........+..+.+|||||. .. +...+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~--~~~~~~~~~~~~~i~D~~Gq--~~-------~~~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGF--NVETVEYKNISFTVWDVGGQ--DK-------IRPLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcce--eEEEEEECCEEEEEEECCCC--HH-------HHHHHHHHh
Confidence 34689999999999999999998766532 2222222 22234566789999999993 22 223455678
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChHhH
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.++|++|+|+|+++. ......++...+.. ...+.|+++|+||+|+.+....
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~ 136 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA 136 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH
Confidence 999999999999873 44444555554432 2257899999999999765433
No 83
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.70 E-value=1.7e-16 Score=127.17 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=81.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||+.++..+.+. ..+.+|....... ..++....+.+|||+| +..+..+.. .++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhc
Confidence 37999999999999999999998874 2333343322222 2344457899999999 444443332 358
Q ss_pred cCccEEEEEEeCCC--CchhH-HHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACK--APERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++++++++|+|.++ +++.+ ..|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHY-APNVPIVLVGTKLDLRDD 120 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhccC
Confidence 89999999999987 45565 4566665433 457999999999999654
No 84
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.4e-16 Score=143.67 Aligned_cols=127 Identities=27% Similarity=0.302 Sum_probs=92.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhh-hHHHH-HHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML-DSMMM-KNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~-~~~~~ 191 (254)
...+++++|.+|+|||||+|++++.....+++.+++|.+.....+...+..+.+|||||+........ ...+. .....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45799999999999999999999988766888999998887777777788899999999743221111 11111 11223
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+..+|++++|+|+++........+..... ..+.|+++|+||+|+...+
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~--~~~~piIiV~NK~Dl~~~~ 338 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVI--EAGRALVLAFNKWDLVDED 338 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCChh
Confidence 568999999999999865443332222222 3578999999999998643
No 85
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=4.5e-16 Score=124.56 Aligned_cols=115 Identities=20% Similarity=0.212 Sum_probs=81.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
...+++++|.+|+|||||++++...++. . +.+|+.... .........+.+|||||. ..+ ...+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~-~~~t~~~~~-~~~~~~~~~l~l~D~~G~--~~~-------~~~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--T-TIPTIGFNV-ETVTYKNISFTVWDVGGQ--DKI-------RPLWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--C-cCCccccce-EEEEECCEEEEEEECCCC--hhh-------HHHHHHHh
Confidence 3478999999999999999999866653 2 222322211 233456788999999994 222 23345668
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++|+|+|+++. ++....++..+++.. ..+.|+++|+||+|+.+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999874 455666666655432 256899999999999654
No 86
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=5.3e-16 Score=126.85 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=78.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEEE--Ee-cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~~--~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+|+++|.+|+|||||++++.+..+. ..+.+|. .+..... .+ +....+.+|||||. ..+. ..+..+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~--~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~~ 70 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS--QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFG-------GMTRVY 70 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhh-------hhHHHH
Confidence 7999999999999999999988764 2232332 2222222 23 44678999999994 2222 223456
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcc----cCCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGD----HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~----~~~~~piivV~nK~Dl~~ 240 (254)
+..++++++|+|+++ +++.+..|+..+... ...++|+++|+||+|+.+
T Consensus 71 ~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 899999999999987 355565565544322 135789999999999973
No 87
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=5.2e-16 Score=125.18 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|.+|+|||||++++.+..+..+.+ |...........+..+.+|||||.... ...+..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~ 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQA---------RRLWKDY 81 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHH---------HHHHHHH
Confidence 445789999999999999999999887643221 222223344456788999999994221 1334466
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
+..+|++++|+|+++. ......++..+++.. ..+.|+++|+||+|+..
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 8899999999999874 344444555554421 25789999999999963
No 88
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.70 E-value=1.6e-16 Score=126.45 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=76.3
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
|+++|.+|+|||||++++.+..+. ..+.++........ .++....+.+|||||.. .+..+. ..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~~-------~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQE--DYDRLR-------PLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc--ccchhc-------hhhcCC
Confidence 578999999999999999998774 23333333322222 23344579999999943 222222 234789
Q ss_pred ccEEEEEEeCCCC--chhHHH-HHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 196 ADCIVVLVDACKA--PERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 196 ~d~iv~vid~~~~--~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+|++++|+|+++. ++.+.. |+..+.. ..++.|+++|+||+|+...
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKH-FCPNTPIILVGTKLDLRED 117 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEecChhhhhC
Confidence 9999999999873 444443 4444433 3468999999999999763
No 89
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=2.9e-16 Score=127.15 Aligned_cols=117 Identities=22% Similarity=0.212 Sum_probs=81.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||||++++....+. ..+.+|....... .++.....+.+|||||... +..+ +..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~l-------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE--YSAM-------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc--chhh-------HHHH
Confidence 468999999999999999999988763 2333333222222 3344456788999999433 2222 3345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+..++++++|+|+++. ++....|+..+.... ..+.|+++|+||+|+....
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER 126 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 7899999999999873 455666666655432 3578999999999986543
No 90
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=4.4e-16 Score=128.71 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=79.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCc-eEEEEEEEEec---CCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t-t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+++++|.+|+|||||++++.+..+. ..+.+| +.+.....+.. ....+.+|||||. ..+. ..+..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--~~~~-------~l~~~~ 70 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--SIGG-------KMLDKY 70 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--HHHH-------HHHHHH
Confidence 7999999999999999999988764 333333 33333322322 3578999999993 2222 233455
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhccc---CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~~ 242 (254)
++.+|++++|+|+++ +++.+..|+..+.+.. ..+.|+++|+||+|+.+.+
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~ 125 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR 125 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc
Confidence 889999999999987 4555666666554432 2356899999999997554
No 91
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.70 E-value=4.8e-16 Score=124.45 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=79.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe------------cCCeeEEEEecCCCcccchhhhh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------GPEYQMILYDTPGIIEKKIHMLD 182 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~------------~~~~~~~liDtpG~~~~~~~~~~ 182 (254)
..+++++|++|+|||||++++....+.. ...+..+.+....... .....+.+|||||. ..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~----- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--ER----- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--HH-----
Confidence 3589999999999999999999887642 1122222222111111 23467999999993 22
Q ss_pred HHHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 183 SMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 183 ~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+...+..++..+|++++|+|+++ ++..+..|+..+.... ..+.|+++|+||+|+.+.+
T Consensus 76 --~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~ 136 (180)
T cd04127 76 --FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR 136 (180)
T ss_pred --HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC
Confidence 22334456889999999999987 3455666666554432 3578999999999997643
No 92
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=4.5e-16 Score=125.50 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=76.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe---cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+|||||++++.+..+. ..+.++.......... .....+.+|||||. ..+.. ....++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDR-------LRPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHH-------HHHHhC
Confidence 7999999999999999999988774 3333333322222222 33567999999993 22222 223357
Q ss_pred cCccEEEEEEeCCCC--chhHHH-HHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++. ++.... |+..+. ....+.|+++|+||+|+...
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVN-HFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhCCCCCEEEEEeChhhhhC
Confidence 899999999999873 344433 443333 33467999999999999653
No 93
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=8.4e-16 Score=120.82 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=81.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.+++++|++|+|||||++++.+.++.. ..+..+.+........+.....+.+|||||. ..+. .....+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ--ERYR-------SLAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--HHHH-------HHHHHHhc
Confidence 479999999999999999999988753 1122222222223334455678999999993 2221 22334578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+|++++|+|+++. +.....++..+......+.|+++|+||+|+..
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 89999999999873 45556666665554446789999999999874
No 94
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.70 E-value=1.1e-16 Score=127.28 Aligned_cols=125 Identities=32% Similarity=0.362 Sum_probs=87.4
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccE
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 198 (254)
++|++|+|||||+|++.+.+. .+..++++|.....+..... +..+.+|||||+....... ......+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CCccHHHHHHHhccCE
Confidence 479999999999999999876 46778888877777666666 8899999999974321110 0111233455778999
Q ss_pred EEEEEeCCCCc--------hhHHHHHHHhhcccC-------CCCCEEEEEecCCCCChHhHHHH
Q 025346 199 IVVLVDACKAP--------ERIDEILEEGVGDHK-------DKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 199 iv~vid~~~~~--------~~~~~~~~~~~~~~~-------~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+++|+|+++.. .....+...+..... .+.|+++|+||+|+.........
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 141 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEE 141 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHH
Confidence 99999998752 223334333332221 36899999999999877665543
No 95
>PRK11058 GTPase HflX; Provisional
Probab=99.70 E-value=2.9e-16 Score=141.66 Aligned_cols=125 Identities=25% Similarity=0.291 Sum_probs=88.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.++++++|.+|+|||||+|++.+.+.. +.+.+++|.+.....+...+ ..+.+|||||+...........+ ..+...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f-~~tl~~~ 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF-KATLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHH-HHHHHHh
Confidence 468999999999999999999998876 77888888887776665544 38899999997443222222223 3345667
Q ss_pred cCccEEEEEEeCCCCchh-HHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKAPER-IDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~-~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|++++... ....+..++... ..+.|+++|+||+|+...
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 899999999999885321 111122222222 246899999999999754
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.70 E-value=1.9e-16 Score=139.89 Aligned_cols=126 Identities=28% Similarity=0.367 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc--hhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~~~~~ 191 (254)
...+++++|.|++|||||+|++++.+...+++.++||++.+...+..++..+.++||+|+.... .+..+.+-......
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 5689999999999999999999999999999999999999999999999999999999975322 11222222234445
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+..++++++|+|++.+..+.+..+..... ..+.++++|+||.|+++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~--~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIE--EAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHH--HcCCCeEEEEEccccCCc
Confidence 678999999999999998888877766555 457899999999999886
No 97
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=9.1e-17 Score=127.97 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=95.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+++++|.+++|||-|+.++...++...+..+ +..-......+++...+.+||||+| +.++. ....+|+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyr-------AitSaYY 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYR-------AITSAYY 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhc-------cccchhh
Confidence 458999999999999999999999986332221 2222222344567778899999999 44433 4456789
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++|.+.++|+|+++ .++.+..|+.++.....+++++++|+||+||.+.+.+.
T Consensus 85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~ 138 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVP 138 (222)
T ss_pred cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccc
Confidence 99999999999987 57889999999888888999999999999999865554
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.69 E-value=5.5e-16 Score=122.07 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=78.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++....+. . +.+|+... ..........+.+|||||. .. +...+..++.++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~-~~pt~g~~-~~~~~~~~~~~~l~D~~G~--~~-------~~~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--T-TIPTIGFN-VETVEYKNISFTVWDVGGQ--DK-------IRPLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--c-cCCCCCcc-eEEEEECCEEEEEEECCCC--Hh-------HHHHHHHHhcCC
Confidence 7999999999999999999877664 2 22222211 1234456788999999994 22 223345678999
Q ss_pred cEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++. +.....++..++.. ...+.|+++|+||+|+.+.
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 999999999873 45555556555443 2246899999999999653
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.69 E-value=6.8e-16 Score=119.88 Aligned_cols=113 Identities=23% Similarity=0.248 Sum_probs=79.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++.+.++... ..+..+...... ........+.+||+||.. .+.......+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE---------RFRSITPSYYR 71 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChH---------HHHHHHHHHhc
Confidence 799999999999999999998887532 222222222222 223345789999999942 12233455678
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
.+|++++|+|+++. ......++..+......+.|+++|+||+|+.
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 89999999999873 4455566665555444679999999999996
No 100
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=2.7e-16 Score=122.82 Aligned_cols=119 Identities=26% Similarity=0.280 Sum_probs=81.5
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEE
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 199 (254)
++|.+|+|||||++++.+... .++..+++|.......+..++..+.+|||||+........+.......... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 479999999999999998764 366778888776666666667889999999975433221122221221111 589999
Q ss_pred EEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 200 v~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
++|+|+.+.... ..++..+.. .+.|+++|+||+|+.+...+
T Consensus 79 i~v~d~~~~~~~-~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 79 VNVVDATNLERN-LYLTLQLLE---LGLPVVVALNMIDEAEKRGI 119 (158)
T ss_pred EEEeeCCcchhH-HHHHHHHHH---cCCCEEEEEehhhhcccccc
Confidence 999999874322 233323222 36899999999999876443
No 101
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=7.8e-16 Score=121.32 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=77.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCc--eEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|.+|+|||||++++....+... ..+.. +........+.....+.+|||||. ..+. ..+..++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ-QLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--ERFQ-------TMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCceeeEEEEEEEEECCEEEEEEEEeCCCc--hhhh-------hhhHHHhC
Confidence 799999999999999999998876422 11111 111122233445567899999993 2222 23445688
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+|++++|+|+++. +.....|+..+.+ ...+.|+++|+||+|+..
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELRE-YRPEIPCIVVANKIDLDP 118 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCcEEEEEECccCch
Confidence 99999999999873 3445566655543 335799999999999854
No 102
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.69 E-value=4.3e-16 Score=124.59 Aligned_cols=113 Identities=21% Similarity=0.189 Sum_probs=78.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||+.++....+. ..+.++...... ...++....+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCc--hhhhhh-------hhhhc
Confidence 47999999999999999999988763 333334333222 223344567899999993 332222 23457
Q ss_pred cCccEEEEEEeCCCC--chhHHH-HHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACKA--PERIDE-ILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++|++|+|+|+++. +..+.. |+..+.. ...+.|+++|+||+|+.+
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRD 119 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhcc
Confidence 899999999999873 445543 4444333 345799999999999964
No 103
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=7.1e-16 Score=122.58 Aligned_cols=120 Identities=21% Similarity=0.235 Sum_probs=81.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|++|+|||||+++++...+.. ...+......... ..++....+.+|||||.. .+.. ..+..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~------~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQE--RFRK------SMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChH--HHHH------hhHHHh
Confidence 3589999999999999999999877542 1222222222222 233445789999999932 2110 123445
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
++.+|++++|+|+++ ++.....|+..+.... ..++|+++|+||+|+....+
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 126 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ 126 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC
Confidence 789999999999987 3455666665554432 35799999999999976554
No 104
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.69 E-value=9.8e-16 Score=120.65 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=79.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEEE--EE-ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG--IC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~~--~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+++++|.+|+|||||++++..........+.+++. +.... .. ......+.+|||||. ..+. ......
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ--ELYS-------DMVSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH--HHHH-------HHHHHH
Confidence 79999999999999999998653211334444442 22111 22 244578999999993 2222 223345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|++++|+|.++. +.....|+..+... ..+.|+++|+||+|+.+..+
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTA-SKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccC
Confidence 7899999999999873 44555666554433 35689999999999976543
No 105
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=8.6e-16 Score=127.10 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=84.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++.+..+.. ...+....+..... .++....+.+|||||. ..+. ..+..+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~~ 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYR-------AITSAY 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHHH
Confidence 4689999999999999999999887642 22233323322222 3344568999999993 2222 234456
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++.++++++|+|+++ +++.+..|+..+......+.|+++|+||+|+...+.
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~ 134 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS 134 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC
Confidence 789999999999987 455666777666555456799999999999965543
No 106
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.69 E-value=4.2e-16 Score=129.08 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=80.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++...++.. ..+..... ..........+.+|||||. ..+..+ ...++..+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~--~~~~~~~~~~l~iwDt~G~--e~~~~l-------~~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGA--FYLKQWGPYNISIWDTAGR--EQFHGL-------GSMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceE--EEEEEeeEEEEEEEeCCCc--ccchhh-------HHHHhccC
Confidence 79999999999999999999988742 22222222 1222335677999999994 333332 23457899
Q ss_pred cEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 197 DCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 197 d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
|++|+|+|+++ ++..+..++..+.+....+.|+++|+||+|+..
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999988 466677777766655456799999999999975
No 107
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=6.4e-16 Score=127.32 Aligned_cols=123 Identities=19% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
.....+++++|.+|+|||||++++++..+....+..+.+........+.....+.+|||||. ..+.. .+..
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~ 81 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRT-------LTSS 81 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHH-------HHHH
Confidence 34457999999999999999999998876432222222222222223344568999999994 22222 2345
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcc--cCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~--~~~~~piivV~nK~Dl~~~~~ 243 (254)
+++.+|++++|+|+++. +..+...+...+.. ...+.|+++|+||+|+...+.
T Consensus 82 ~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 137 (211)
T PLN03118 82 YYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD 137 (211)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc
Confidence 57899999999999873 34444433332322 134689999999999975443
No 108
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=4.7e-16 Score=129.68 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=81.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++....+. ..+.+|....... .+++....+.+|||+| +..+..+ ...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~-------~~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNV-------RPL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHH
Confidence 4568999999999999999999988774 3343343222222 2344567899999999 4333332 234
Q ss_pred HccCccEEEEEEeCCCC--chh-HHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKA--PER-IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++.++|++++|+|+++. +.. ...|+..+... .++.|+++|+||+|+..
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~-~~~~piilVgNK~DL~~ 131 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDY-CPSTRILLIGCKTDLRT 131 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccccc
Confidence 68999999999999883 444 34566655443 35789999999999854
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.69 E-value=1.9e-16 Score=125.07 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE--EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||+++++...+. ..+++++... .....++....+.+|||||...... .....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--------EQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--------chHHHHHH
Confidence 4899999999999999999987653 3344443222 2223344456789999999543111 11234467
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc--CCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~ 242 (254)
.+|++++|+|+++. ++.+..|+..+.... ..+.|+++|+||+|+...+
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 122 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYR 122 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhC
Confidence 89999999999873 444555554443322 3479999999999986543
No 110
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=1e-15 Score=120.00 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++.+..+... .+ +...............+.+|||||... +...+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~-t~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP-TVGFNVEMLQLEKHLSLTVWDVGGQEK---------MRTVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC-ccCcceEEEEeCCceEEEEEECCCCHh---------HHHHHHHHhccC
Confidence 488999999999999999998876422 22 211111111123457899999999421 112344567899
Q ss_pred cEEEEEEeCCCCc--hhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 197 d~iv~vid~~~~~--~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
|++++|+|+++.. .....++..+++.. ..+.|+++|+||+|+..
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 9999999998853 55556666655432 25799999999999964
No 111
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=7.3e-16 Score=127.79 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=82.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccc-cCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+++++|.+|+|||||+++++..++... .+..+.+..............+.+|||||. ..+.. .+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGG-------LRDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhh-------hhHH
Confidence 5567999999999999999999988776421 111112222222223344578999999994 32222 2334
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++..++++|+|+|.++ ++..+..|+..+.+. ..+.|+++|+||+|+..
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN 131 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhh
Confidence 5789999999999988 456666777666543 46799999999999864
No 112
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=7.3e-16 Score=138.45 Aligned_cols=122 Identities=27% Similarity=0.267 Sum_probs=90.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.|+++|.+++|||||++++++.+.. ++++|+||..+..+.+... +..+.++||||+...... ...+...+...+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhh
Confidence 7999999999999999999988755 6889999999888877765 688999999998653211 11222445566788
Q ss_pred ccEEEEEEeCCCC-----chhHHHHHHHhhccc--CCCCCEEEEEecCCCCCh
Q 025346 196 ADCIVVLVDACKA-----PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 196 ~d~iv~vid~~~~-----~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~ 241 (254)
++++++|+|+++. .+....+..++.... ..+.|+++|+||+|+...
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA 289 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence 9999999999742 233444444433321 146899999999998544
No 113
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=6.1e-16 Score=122.69 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+++++|.+|+|||||+++++...+. ..+.++.. .... ...+.....+.+|||||.. .+..+. ..++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~~-------~~~~ 70 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE--KFGGLR-------DGYY 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh--hhcccc-------HHHh
Confidence 7999999999999999999977653 22222221 1111 1223445789999999953 222222 2346
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++|+|+|+++. +..+..|+..+.... .+.|+++|+||+|+...
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-GNIPIVLCGNKVDIKDR 119 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhcccc
Confidence 789999999999873 445556666655443 37999999999999743
No 114
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=9.5e-16 Score=120.40 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=79.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+|+++|.+|+|||||++++.+..+.. ...+..+.+.... .+. .....+.+|||||. ..+. .....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ--EEFD-------AITKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch--HHHH-------HhHHHH
Confidence 79999999999999999999887642 1122222222222 222 44578999999993 2222 223456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++.+|++++|+|+++. +..+..|+..+.. ...+.|+++|+||+|+..+..
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKVEA-ECGDIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhcccccC
Confidence 7899999999999873 4555566555432 345799999999999976543
No 115
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=1.2e-15 Score=119.38 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=79.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|.+|+|||||++++.+..+.. ...+.++........ ......+.+|||||. ..+.. ....++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--ERYHA-------LGPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCch--HHHHH-------hhHHHhc
Confidence 79999999999999999999887642 222222222222222 233457999999993 22222 2334467
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+|++++|+|+++. ++....++..+......+.|+++|+||+|+....
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 89999999999873 3455566655555444578999999999998543
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.68 E-value=1.5e-15 Score=121.27 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++++|.+|+|||||++++...++... .+ |..............+.+|||||.. . +...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~--~-------~~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQE--S-------LRSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCH--H-------HHHHHHHHhh
Confidence 46899999999999999999998776422 22 2112223445567899999999942 1 2233455678
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
.+|++++|+|+++. +.....++..+++.. ..+.|+++|+||+|+..
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999999999874 334445555554432 24689999999999975
No 117
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=1.2e-15 Score=122.83 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+|+++|++|+|||||++++....+.. +.+|+. ......+..+..+.+|||||. .. +...+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~T~~-~~~~~~~~~~~~~~l~D~~G~--~~-------~~~~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT---TIPTIG-FNVETVEYKNLKFTMWDVGGQ--DK-------LRPLWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCccc-cceEEEEECCEEEEEEECCCC--Hh-------HHHHHHHHh
Confidence 34689999999999999999998766532 222222 222344567789999999994 22 223345668
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++|+|+|+++. +.....++..++.. ...+.|+++|+||+|+...
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 999999999999873 34455555555432 1246899999999998653
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.68 E-value=1.9e-15 Score=122.17 Aligned_cols=116 Identities=25% Similarity=0.255 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|++|+|||||++++.+..+.... + |.......+...+..+.+|||||... +...+..+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~---~-T~~~~~~~i~~~~~~~~l~D~~G~~~---------~~~~~~~~ 83 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHV---P-TLHPTSEELTIGNIKFKTFDLGGHEQ---------ARRLWKDY 83 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccC---C-ccCcceEEEEECCEEEEEEECCCCHH---------HHHHHHHH
Confidence 44678999999999999999999987753221 1 22222334455678899999999422 11334566
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..++++++|+|+++. +.....++..+.+.. ..+.|+++|+||+|+...
T Consensus 84 ~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 84 FPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 7899999999999873 344555666655433 256999999999999743
No 119
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.67 E-value=1.5e-15 Score=120.41 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=79.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||||++++.+..+.. ...+..+.... ....+.....+.+|||||. ..+. ..+..+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~-------~~~~~~ 74 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ--ERFR-------SLRTPF 74 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCCh--HHHH-------HhHHHH
Confidence 4689999999999999999999887642 22222222222 2223455567899999993 2222 233456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc----CCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH----KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~----~~~~piivV~nK~Dl~~ 240 (254)
++.+|++++|+|+++. ++....|...+.... ..+.|+++|+||+|+..
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 7899999999999873 455666665554322 25689999999999964
No 120
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.1e-16 Score=115.74 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=94.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCC--CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|..|+|||.|+.+|...-++. +... +..-......+.++..++++|||+| ++++. ..+.+|+
T Consensus 8 fkivlvgnagvgktclvrrftqglfpp-gqgatigvdfmiktvev~gekiklqiwdtag--qerfr-------sitqsyy 77 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFR-------SITQSYY 77 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCC-CCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHH-------HHHHHHh
Confidence 589999999999999999999776652 2222 2222233344567788999999999 44433 4455779
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
+.|+++|+|+|++. +++-+.+|+.++-+..+.+.--|+|+||+|+.+.+++....
T Consensus 78 rsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qi 134 (213)
T KOG0095|consen 78 RSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQI 134 (213)
T ss_pred hhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHH
Confidence 99999999999976 67888899999888777777789999999999988776543
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.7e-15 Score=119.94 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=79.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec--CCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++.+..+. ....+..+.......+.. ....+.+|||||.. . +......+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~--~-------~~~~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE--R-------FRSITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH--H-------HHHHHHHH
Confidence 468999999999999999999876653 222222222233322333 33668899999932 1 11233456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|++++|+|+++. +.....|+..+......+.|+++|+||+|+.+.++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 8899999999999863 34455565554443345789999999999976544
No 122
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=2.1e-15 Score=121.49 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=78.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce--EEEEEEE-EecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt--~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+|+++|.+|+|||||++++....+. ...|..+ ....... .++.+..+.+|||||. ..+ ...+..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~-------~~~~~~ 71 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKL-------RPLWKS 71 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCc--HhH-------HHHHHH
Confidence 458999999999999999999987764 2233222 1111111 1345688999999993 221 123445
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
++..+|++++|+|+++. ......++..+.... ..+.|+++|+||+|+..
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 68899999999999874 334444555444332 25689999999999864
No 123
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=1.5e-15 Score=124.00 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=80.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|++|+|||||++++.+..+. ....+....+.....+ .+....+.+|||||. ..+. ..+..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFR-------TITSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHH-------HHHHHH
Confidence 468999999999999999999988764 1112222222222222 233467899999993 2222 234456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+..++++++|+|+++. ++.+..|+..+.. .....|+++|+||+|+....
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~-~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ-NCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECccccccc
Confidence 7889999999999873 4556666665443 34578999999999997643
No 124
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=1.7e-15 Score=122.00 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+++++|..|+|||||++++....+. ..+.+|. .+.... ..++....+.+|||+|. ..+.. .+..++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~-------~~~~~~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ--REFIN-------MLPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--hhHHH-------hhHHHC
Confidence 7999999999999999999988774 2333333 222222 23334577999999993 33222 233468
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
+.+|++++|+|+++. +..+..|+..+.+......| ++|+||+|+.
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 899999999999883 55666777766554334566 6889999996
No 125
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.67 E-value=7.7e-16 Score=122.49 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=76.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++...++. ..+.++........+ +.....+.+|||||.. .+.... ..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~~-------~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRLR-------PLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc--cccccc-------cccCC
Confidence 7999999999999999999988764 333344433322222 3334568899999943 222222 23478
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|.++. ++.....+...+.....+.|+++|+||+|+.+.
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 89999999999873 334433233333333578999999999998654
No 126
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=1.6e-15 Score=123.61 Aligned_cols=131 Identities=14% Similarity=0.220 Sum_probs=90.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccC-CCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+||||++|.+++.+...... .++.|...........+..+.++||||+.+... +.+.......+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 69999999999999999999987543332 446676666666666788999999999976542 233333444444456
Q ss_pred cCccEEEEEEeCCCCchhHHHHHHHhhcccCC--CCCEEEEEecCCCCChHhHHHH
Q 025346 194 INADCIVVLVDACKAPERIDEILEEGVGDHKD--KLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~--~~piivV~nK~Dl~~~~~~~~~ 247 (254)
.++|+++||+++.+........+..+.+.++. ..++++|+|++|.+....+++.
T Consensus 82 ~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~ 137 (196)
T cd01852 82 PGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDY 137 (196)
T ss_pred CCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHH
Confidence 78999999999988333333333333333332 2689999999999876555443
No 127
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.67 E-value=7.3e-16 Score=129.94 Aligned_cols=113 Identities=20% Similarity=0.318 Sum_probs=79.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|.+|+|||||+++++...+. ..+.+|+.+.....+ .+....+.+|||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 6999999999999999999988774 244444433333333 334467899999994 3322222 23467
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhcc---------cCCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGD---------HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~---------~~~~~piivV~nK~Dl~~ 240 (254)
.+|++|+|+|+++ +++.+..++.++... ...+.|+++|+||+|+..
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 8999999999987 345566666555432 235789999999999975
No 128
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=4.6e-16 Score=130.49 Aligned_cols=133 Identities=48% Similarity=0.733 Sum_probs=102.6
Q ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHH---HH
Q 025346 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM---MM 186 (254)
Q Consensus 110 ~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~---~~ 186 (254)
..+.+...++++|.||+|||||.|.+++.++..++....||+..+.+.+..+..++.|+||||+........+.. ..
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 345667899999999999999999999999999999999999999999999999999999999876543322222 22
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+.....+..||+|+.|+|+++....+.-.+...+.. ..++|-++|.||+|.+.+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCceeeccchhcchhhh
Confidence 345566889999999999996433333222111111 25689999999999987654
No 129
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=2e-15 Score=118.20 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=79.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|.+|+|||||++++.+..........+. ........+..+.+|||||... + ...+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~D~~G~~~--~-------~~~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGF----NVETVEYKNVSFTVWDVGGQDK--I-------RPLWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCc----ceEEEEECCEEEEEEECCCChh--h-------HHHHHHHhccC
Confidence 589999999999999999998874322222222 2223445578899999999432 1 12344567889
Q ss_pred cEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 197 DCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 197 d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
|++++|+|+++. ......++..+.... ..+.|+++|+||+|+....
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 999999999874 444555555544432 3578999999999998754
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.66 E-value=1.3e-15 Score=123.49 Aligned_cols=113 Identities=23% Similarity=0.264 Sum_probs=77.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE-E--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-L--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~-~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+|||||+++++...+. ...+.++..... . ...++....+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 7999999999999999999988764 223444433222 1 222333456789999994 322222 23357
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+|++++|+|+++. ++....|+..+.. ...+.|+++|+||+|+..
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHh-cCCCCCEEEEEEcccccc
Confidence 899999999999874 3444556555443 345799999999999864
No 131
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.66 E-value=1.9e-15 Score=118.61 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=76.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|.+++|||||++++....+.. ..+ +.. ......+..+..+.+|||||... +...+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~-t~~-~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP-TIG-FNVETVTYKNLKFQVWDLGGQTS---------IRPYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC-ccC-cCeEEEEECCEEEEEEECCCCHH---------HHHHHHHHhcCC
Confidence 58999999999999999998766532 222 211 11223445678899999999432 113345668899
Q ss_pred cEEEEEEeCCCCc--hhHHHHHHHhhcc-cCCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~~--~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~ 241 (254)
+++++|+|+++.. .....++...++. ...+.|+++|+||+|+...
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 9999999998742 3333444443332 2246899999999999754
No 132
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=2.3e-15 Score=118.15 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=77.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
+++++|++|+|||||++++.+..+.. ..+..+.+..............+.+|||||. ..+. ......++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFR-------TLTSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhh-------hhhHHHhCC
Confidence 79999999999999999999887642 1222222222222233344578999999993 2211 223445789
Q ss_pred ccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 196 ADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 196 ~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
+|++++|+|.++. +.....++..+.... ..+.|+++|+||+|+..
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 9999999999873 344555555444332 35789999999999973
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.9e-15 Score=144.89 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=93.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHH--HHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~--~~~~ 191 (254)
..++++++|.+|+|||||+|++++.+...+++.++||++.....+...+..+.+|||||+...........+.. ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 35799999999999999999999998766788999999888777777788899999999753221111111111 1234
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+..+|++++|+|+++........+..... ..+.|+++|+||+|+.+...
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~--~~~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAV--DAGRALVLVFNKWDLMDEFR 578 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEEchhcCChhH
Confidence 578999999999999865544332222222 24689999999999987544
No 134
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=1.2e-15 Score=122.49 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=80.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccccc---------------CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhh
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 181 (254)
+|+++|.+|+|||||+|.+.+....... ...+++...........+..+.+|||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4889999999999999999887654211 11233444444445566788999999995321
Q ss_pred hHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 182 ~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
...+..++..+|++++|+|++++.......+...... .+.|+++|+||+|+..+++..
T Consensus 76 ----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~ 133 (189)
T cd00881 76 ----SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLE 133 (189)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHH
Confidence 1334455678999999999988554333322222222 578999999999999754443
No 135
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.66 E-value=3.9e-15 Score=117.48 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=76.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec---CCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+.++++|.+|+|||||++++....+.. ...+++|.......... .+..+.+|||||... +. ..+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~--~~-------~~~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--FT-------NMRARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH--HH-------HHHHHH
Confidence 468999999999999999999887652 33445555443334443 367899999999422 11 222344
Q ss_pred ccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++...... ..+.. .. ..+.|+++|+||+|+...
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~-~~--~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKL-AK--AANVPFIVALNKIDKPNA 117 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHH-HH--HcCCCEEEEEEceecccc
Confidence 678999999999987533222 22222 22 246899999999999754
No 136
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=1.2e-15 Score=121.46 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=76.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|++|+|||||++++....+. ..+.++........ .+.....+.+|||||.. .+..+ ....+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~-------~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCch--hhhhc-------ccccc
Confidence 57999999999999999999988764 22333333222222 23344678999999942 22221 12346
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++. +......+...+.....+.|+++|+||+|+.+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 889999999999863 3444332222233334579999999999987643
No 137
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.65 E-value=1.3e-15 Score=121.35 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=78.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|.+|+|||||++++....+. ..+.+|+.+..... .++....+.+|||||. ..+..+ ...++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKL-------RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhccc-------cccccC
Confidence 7899999999999999999987763 44555554433322 3333467899999994 222222 223578
Q ss_pred CccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++. ++... .|+..+. ....+.|+++|+||+|+...
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIR-KHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHH-hhCCCCCEEEEeeChhhccC
Confidence 99999999999884 44443 3444443 23357999999999999653
No 138
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=2.3e-15 Score=124.13 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=81.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE---ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC---SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+|+++|.+|+|||||++++.+..+.... .+..+.+.....+ .+....+.+|||||. ..+. .....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFR-------SITRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHH-------HHHHHH
Confidence 58999999999999999999988765332 2222222222222 233468999999993 2221 223456
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++ ++..+..|+..+..... ...|+++|+||+|+....
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~ 125 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR 125 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc
Confidence 889999999999987 45666777776655433 357889999999997643
No 139
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.65 E-value=1.1e-15 Score=120.90 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=76.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|.+|+|||||++++.+.++. ..+.++...... ....+....+.+|||||.... .... ...+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~--~~~~-------~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY--DRLR-------PLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc--cccc-------hhhcC
Confidence 7999999999999999999988763 222222222222 223344567999999995432 1111 12357
Q ss_pred CccEEEEEEeCCCCc--hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 195 ~~d~iv~vid~~~~~--~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|++++|+|+++.. ......+...+.....+.|+++|+||+|+.....
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 899999999998732 2222222232333345799999999999987654
No 140
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=7.2e-15 Score=116.43 Aligned_cols=114 Identities=25% Similarity=0.327 Sum_probs=75.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|++|+|||||++++....+.. ...+..+.+..... .......+.+|||||. .. +...+..+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~-------~~~~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ER-------FQSLGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HH-------HHhHHHHHhc
Confidence 79999999999999999999887642 22222222222222 2333456889999993 21 1233445688
Q ss_pred CccEEEEEEeCCCCc--hhHHHHHHHhhccc----CCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~~--~~~~~~~~~~~~~~----~~~~piivV~nK~Dl~~ 240 (254)
.+|++++|+|+.+.. .....|...+.... ..++|+++|+||+|+..
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 999999999998743 34444444433332 23789999999999984
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=1.9e-15 Score=123.35 Aligned_cols=122 Identities=25% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHH--
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV-- 189 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~-- 189 (254)
...+|+++|.+|+|||||+|++.+..+. ++..+++|....... .. .+.+|||||+..... ......+...+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4578999999999999999999988754 666777776544322 22 689999999632210 00011121222
Q ss_pred --HHHccCccEEEEEEeCCCCchh-----------HHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 190 --RSAGINADCIVVLVDACKAPER-----------IDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 --~~~~~~~d~iv~vid~~~~~~~-----------~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
...+..++++++|+|.+..... ....+...+. ..++|+++|+||+|+...+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcH
Confidence 2234567899999998653211 1111222222 2478999999999997654
No 142
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.65 E-value=7.7e-15 Score=119.03 Aligned_cols=130 Identities=26% Similarity=0.320 Sum_probs=85.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh-hhhHHHH---
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMM--- 186 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~--- 186 (254)
....++++++|.+|+|||||++++++.+ ...+.+.+++|........ +..+.+|||||+...... .....+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 3456789999999999999999999876 4556666777765443222 468999999997532211 1111111
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
..+.......+++++|+|.+.+.......+...+. ..+.|+++|+||+|+.+..+...
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~--~~~~~~iiv~nK~Dl~~~~~~~~ 155 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK--EYGIPVLIVLTKADKLKKGERKK 155 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHH--HcCCcEEEEEECcccCCHHHHHH
Confidence 22222234557889999988765554433333333 24689999999999988765443
No 143
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=2.6e-15 Score=117.22 Aligned_cols=114 Identities=25% Similarity=0.240 Sum_probs=80.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|++|+|||||++++++..+ ...+.+++........... ...+.+||+||... +. ......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~-------~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE--FS-------AMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH--HH-------HHHHHHHh
Confidence 589999999999999999998774 4455555554444444333 46789999999422 11 22334577
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|.++. ......++..+..... ...|+++|+||+|+...
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 89999999999873 3445555555554433 57999999999999863
No 144
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=5.3e-15 Score=114.95 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=78.8
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 197 (254)
++++|++|+|||||++++.+.++. ....+...... .....+...+.+|||||... +...+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPR---------FRSMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcce--EEEEECCEEEEEEECCCCHh---------HHHHHHHHHhcCC
Confidence 789999999999999999998764 22222222221 22344558899999999421 2233455678999
Q ss_pred EEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHH
Q 025346 198 CIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 198 ~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++++|+|+++. ......++....... ..+.|+++|+||+|+.......
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 99999999873 233344455544322 2578999999999998765443
No 145
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.65 E-value=8.5e-16 Score=119.86 Aligned_cols=122 Identities=22% Similarity=0.321 Sum_probs=89.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC----CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP----QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~----~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
....+|+++|.+|+|||||+|++..+++....... +.|+. ..++...+.+++|||+| ++++.++..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKe---v~Vd~~~vtlQiWDTAG--QERFqsLg~----- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKE---VQVDDRSVTLQIWDTAG--QERFQSLGV----- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeE---EEEcCeEEEEEEEeccc--HHHhhhccc-----
Confidence 34569999999999999999999999875322111 12222 23445567799999999 666665543
Q ss_pred HHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccC----CCCCEEEEEecCCCCCh--HhHHH
Q 025346 189 VRSAGINADCIVVLVDACK--APERIDEILEEGVGDHK----DKLPILLVLNKKDLIKP--GEIAK 246 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~----~~~piivV~nK~Dl~~~--~~~~~ 246 (254)
..++++|++++|+|... +++.+..|..+.+.+.. ...|++|++||+|+... ++++.
T Consensus 77 --aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~ 140 (210)
T KOG0394|consen 77 --AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE 140 (210)
T ss_pred --ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH
Confidence 44899999999999876 67888888888776544 45799999999999763 44443
No 146
>PLN00023 GTP-binding protein; Provisional
Probab=99.65 E-value=3.4e-15 Score=128.62 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEE--EEe-------------cCCeeEEEEecCCCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICS-------------GPEYQMILYDTPGII 174 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~--~~~-------------~~~~~~~liDtpG~~ 174 (254)
+.....+|+++|..|+|||||++++.+..+. ..+..|. ...... .++ ...+.+.||||+|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~--~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG-- 92 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSI--ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG-- 92 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcc--cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--
Confidence 4455679999999999999999999988764 2222222 111111 121 1246799999999
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhccc------------CCCCCEEEEEecCCCCC
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDH------------KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~------------~~~~piivV~nK~Dl~~ 240 (254)
+..+.. .+..++.+++++|+|+|+++ +++.+..|+..+.... ..++|++||+||+||..
T Consensus 93 qErfrs-------L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 93 HERYKD-------CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred Chhhhh-------hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 433333 34456899999999999988 4566777777765432 13589999999999976
Q ss_pred h
Q 025346 241 P 241 (254)
Q Consensus 241 ~ 241 (254)
.
T Consensus 166 ~ 166 (334)
T PLN00023 166 K 166 (334)
T ss_pred c
Confidence 4
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=4.1e-15 Score=120.87 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=77.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhc--Ccccccc-------------CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG--QKLSIVT-------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~--~~~~~~~-------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (254)
++|+++|.+++|||||+++++. ..+.... ...++|.......+.+.+..+.+|||||...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 5799999999999999999996 3322110 1123344444445566788999999999532
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCCchhH-HHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+...+..+++.+|++++|+|+++..... ..++.... ..++|+++|+||+|+...
T Consensus 78 ----~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 ----FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKAL---ELGLKPIVVINKIDRPDA 132 (194)
T ss_pred ----HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHH---HcCCCEEEEEECCCCCCC
Confidence 2233455688999999999998754332 22233222 246899999999999643
No 148
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.64 E-value=1.3e-15 Score=119.69 Aligned_cols=117 Identities=26% Similarity=0.387 Sum_probs=85.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
||+++|+.++|||||++++.+..+. ..+.++. .+.....+ +.....+.+||++|. ..+..+. ...+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~~-------~~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ--ERFDSLR-------DIFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTS--GGGHHHH-------HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccccccccccccccccccccccccccccccc--ccccccc-------cccc
Confidence 6899999999999999999988764 2333332 33333333 344567999999993 3333322 2347
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
..+|++++|+|.++ ++..+..|+..+......+.|+++|+||+|+...+++
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v 122 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV 122 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 89999999999987 5677777877766655557999999999999874443
No 149
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=3.4e-15 Score=122.34 Aligned_cols=117 Identities=25% Similarity=0.331 Sum_probs=76.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+.++++|++|+|||||++++...++.. ..+.++......... ..+..+.+|||||... +...+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~---------~~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK---------LRDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHH---------HHHHHHHHH
Confidence 368999999999999999999886532 222222221111121 3467899999999432 223344556
Q ss_pred cCc-cEEEEEEeCCCCc---hhHHHHHHHhhcc---cCCCCCEEEEEecCCCCChHh
Q 025346 194 INA-DCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 194 ~~~-d~iv~vid~~~~~---~~~~~~~~~~~~~---~~~~~piivV~nK~Dl~~~~~ 243 (254)
..+ +++|||+|+++.. .....++..++.. ...++|+++|+||+|+.....
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 777 9999999998752 2333444443321 235799999999999976533
No 150
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=1.4e-15 Score=116.13 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCC-CCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
-..+++++|.+|+|||||+.+|....+....+. .+..-....-.+++...++.+|||+| ++++..+ +.+|
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSy 80 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSY 80 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhH
Confidence 357999999999999999999999887532222 12222222334566678899999999 5554444 4467
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+++|-+||+|+|++. .+..++.|+.++-.. .++++-.++|+||+|....+.+..
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~r 137 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDR 137 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccH
Confidence 999999999999987 566677777765433 235667789999999987666544
No 151
>PLN03108 Rab family protein; Provisional
Probab=99.64 E-value=5.3e-15 Score=121.83 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=81.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++.+..+... ..+....... ..........+.+|||||. ..+. .....+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~-------~~~~~~ 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFR-------SITRSY 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHHH
Confidence 36899999999999999999998876532 2222222221 2223334467899999993 2211 233455
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+.+.+
T Consensus 76 ~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 127 (210)
T PLN03108 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (210)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 7889999999999873 4555566665554444679999999999997643
No 152
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.64 E-value=3.6e-15 Score=123.84 Aligned_cols=116 Identities=26% Similarity=0.281 Sum_probs=77.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCce---EEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt---~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+|||||++++....+. ...+.++. .......+++....+.+|||||.. . ... ..++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~--~~~-------~~~~ 69 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M--WTE-------DSCM 69 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--h--HHH-------hHHh
Confidence 7999999999999999999877663 12222221 112222334556789999999953 1 111 1234
Q ss_pred c-CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhH
Q 025346 194 I-NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~-~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~ 244 (254)
. .+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...+++
T Consensus 70 ~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v 124 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREV 124 (221)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccccee
Confidence 4 89999999999883 455556665554432 257999999999999765543
No 153
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.64 E-value=1.9e-15 Score=118.98 Aligned_cols=107 Identities=11% Similarity=0.187 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE-EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
+++++|++|+|||||+.++....+.. .++++.... ....+++....+.+|||+|... ..++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~--------------~~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD--------------AQFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCccceEEEEEECCEEEEEEEEECCCCCc--------------hhHHhc
Confidence 69999999999999999999877642 222222211 1122233346799999999421 123578
Q ss_pred ccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCC
Q 025346 196 ADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLI 239 (254)
Q Consensus 196 ~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~ 239 (254)
+|++++|+|+++ +++.+..|+..+..... .+.|+++|+||+|+.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 999999999988 45666677776655432 568999999999985
No 154
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=4e-15 Score=117.97 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=79.4
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|.+|+|||||++++....+. ..+.+++....... .+.....+.+|||||.. .+..+ ...++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE--QFTAM-------RELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcc--cchhh-------hHHHH
Confidence 37999999999999999999987763 23333333222222 33445688999999943 22222 33446
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
..++++++|+|.++ .++....+...+.+.. ..+.|+++|+||+|+...+
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 78999999999987 3445555555544322 3579999999999997654
No 155
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=3e-15 Score=122.16 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=78.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+|+++|.+|+|||||++++++.++. ..+..++.......+...+ ..+.+|||||... +..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS--FPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh--hhHH-------HHHHhh
Confidence 5899999999999999999988764 2333343322222333333 6789999999432 2222 234578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~ 240 (254)
.+|++++|+|+++. ++....++..+..... .++|+++|+||+|+..
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99999999999873 4555555555554333 5799999999999976
No 156
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.3e-15 Score=111.85 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=88.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EE-EEEEEE-ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RH-RILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~-~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+++++|.+.+|||||+-+.++..+.. .+..|. .+ .....+ .....++++|||+| ++. +...+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~--afvsTvGidFKvKTvyr~~kRiklQiwDTag--qEr-------yrtiTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAG--QER-------YRTITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccc--ceeeeeeeeEEEeEeeecccEEEEEEEeccc--chh-------hhHHHHH
Confidence 3489999999999999999999988752 111111 11 111112 23457899999999 332 3345667
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
++++++++|+++|+++ ++..+..|...+....-.+.|+|+|+||||+.+++.++.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~ 146 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH 146 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH
Confidence 8999999999999987 566677777766655567899999999999998876643
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.63 E-value=7e-15 Score=119.33 Aligned_cols=116 Identities=23% Similarity=0.212 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCc------cccccCCCCceEEEEEEEEe--------------cCCeeEEEEecCCCccc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICS--------------GPEYQMILYDTPGIIEK 176 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~------~~~~~~~~~tt~~~~~~~~~--------------~~~~~~~liDtpG~~~~ 176 (254)
+++++|.+++|||||++++++.. .......+++|......... ..+..+.+|||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 68999999999999999998731 11122334555544332222 236789999999952
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+...+......+|++++|+|++++.............. .+.|+++|+||+|+.....
T Consensus 80 -------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~ 137 (192)
T cd01889 80 -------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEE 137 (192)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHH
Confidence 122333344678999999999988543332211112221 2579999999999986544
No 158
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=6.5e-15 Score=113.84 Aligned_cols=117 Identities=29% Similarity=0.417 Sum_probs=76.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++.+.+.. ......++++..........++ ..+.+|||||. ..+..+... ..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~-------~~ 71 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRL-------YY 71 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHH-------HH
Confidence 479999999999999999999988 4356666777766665555555 78999999994 322222222 23
Q ss_pred cCccEEEEEEeCCCC---chh-HHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA---PER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~---~~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..++.++.++|.... ... ...+...+......+.|+++|+||+|+....
T Consensus 72 ~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 72 RAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK 124 (161)
T ss_pred hhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch
Confidence 455566666665432 111 1122222222222378999999999998743
No 159
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.63 E-value=1.9e-15 Score=112.91 Aligned_cols=111 Identities=22% Similarity=0.313 Sum_probs=70.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccc---cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
||+++|.+|+|||||++++.+.... ......+.+..............+.+||++|.. .+..... ..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~--~~~~~~~-------~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQE--EFYSQHQ-------FFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSH--CHHCTSH-------HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccc--eeccccc-------chh
Confidence 6899999999999999999988765 122233333333344444555569999999942 2222111 126
Q ss_pred cCccEEEEEEeCCCC--chhHHH---HHHHhhcccCCCCCEEEEEecCC
Q 025346 194 INADCIVVLVDACKA--PERIDE---ILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~---~~~~~~~~~~~~~piivV~nK~D 237 (254)
..+|++++|+|+++. +..+.. ++..+.. ...++|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~-~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRK-RDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHH-HSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEeccC
Confidence 779999999999983 233332 3333322 246699999999998
No 160
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=8.4e-15 Score=114.94 Aligned_cols=113 Identities=23% Similarity=0.258 Sum_probs=79.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
+++++|.+|+|||||+++++...+. ..+.+++...... ..+.....+.+|||||... +. ......+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~-------~~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED--YA-------AIRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhh--hh-------HHHHHHhh
Confidence 7999999999999999999987764 3444443332222 3334457899999999422 22 22334578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
.++++++|+|+++. +.....++..+.... ..++|+++|+||+|+..
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 89999999999773 344556666555432 35799999999999976
No 161
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=4.1e-15 Score=118.31 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE---EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~---~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
+..+++++|.+|+|||||++++.+..+. +..+.+|+.... ...+++....+.+|||+|. ..+..+ ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------ND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------ch
Confidence 3568999999999999999999998874 244444443221 1223344467899999994 322222 22
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. ++.+..++..... ..++|+++|+||+|+.+..
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccc
Confidence 346899999999999874 2333344443221 2479999999999996543
No 162
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=1.5e-14 Score=114.88 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|++|+|||||++++.+..+....+..+ .....+...+..+.+|||||... +...+..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~---------~~~~~~~~ 78 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRA---------IRPYWRNY 78 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHH---------HHHHHHHH
Confidence 446789999999999999999999876542222222 11223344578899999999421 11334456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+..++++++|+|+++. +.....++....+.. ..++|+++++||+|+.......+
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 135 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEE 135 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHH
Confidence 7899999999999873 333344444444322 24689999999999977544433
No 163
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.61 E-value=1e-14 Score=116.57 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccc--------c------cCCCCceEEEEEEEE-----ecCCeeEEEEecCCCccc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------V------TNKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~--------~------~~~~~tt~~~~~~~~-----~~~~~~~~liDtpG~~~~ 176 (254)
++++++|.+++|||||++++++..... . ....+.+........ +.....+.+|||||....
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 368999999999999999998743110 0 001122322221111 445678999999995332
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
...+..++..+|++++|+|+++...... ..+.... ..++|+++|+||+|+...
T Consensus 81 ---------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 81 ---------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSA 134 (179)
T ss_pred ---------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcC
Confidence 1234456788999999999987543211 2222222 246899999999998643
No 164
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=1.3e-14 Score=112.30 Aligned_cols=124 Identities=33% Similarity=0.373 Sum_probs=87.9
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccE
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 198 (254)
++|++|+|||||++.+.+.........+++|........... ...+.+|||||+...... ...........+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~--~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL--GREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc--hhhHHHHHHHHHHhCCE
Confidence 479999999999999998876656667777766555555443 678999999997654321 11112344556788999
Q ss_pred EEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 199 iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+++|+|++.........+.... ...+.|+++|+||+|+.........
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELL--RERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH--HhcCCeEEEEEEccccCChhhHHHH
Confidence 9999999986554444322211 2357899999999999987666543
No 165
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.61 E-value=9.3e-15 Score=119.43 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=76.0
Q ss_pred EeCCCCChHHHHHHHhcCccccccCCCCceE-EE--EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc
Q 025346 121 LGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (254)
Q Consensus 121 ~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 197 (254)
+|.+|+|||||+++++...+. ..+.+|.. .. .....+.....+.+|||||. ..+. ..+..++++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~--e~~~-------~l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ--EKFG-------GLRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--hhhh-------hhhHHHhcCCC
Confidence 599999999999999987663 23333321 22 22223445678999999993 3222 23345689999
Q ss_pred EEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 198 CIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 198 ~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++|+|+|+++. +..+..|+..+.+. ..++|+++|+||+|+..
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCEEEEEECccccc
Confidence 99999999883 45566676666543 36799999999999854
No 166
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.60 E-value=9.5e-15 Score=116.98 Aligned_cols=116 Identities=26% Similarity=0.316 Sum_probs=78.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++....+. ..+.+++........ ......+.+|||||... +. .....++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~-------~~~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE--YS-------ILPQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHh--hH-------HHHHHHH
Confidence 47999999999999999999987753 333333322222222 22345688999999432 11 2223456
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
..++++++|+|.++. ++....++..+.... ..+.|+++|+||+|+...+
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 789999999999873 455556666555543 3568999999999997543
No 167
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=6.7e-15 Score=110.91 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=89.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+++|+|.+|+|||+|+.+|....|. ..|..|+ .+.... .+++..+.++||||+| ++ .+...+..+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qE-------rFrtitsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QE-------RFRTITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HH-------HHHHHHHHH
Confidence 36788999999999999999988764 3443332 232222 3346667899999999 43 344556677
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+++.++++.|+|.++ ++.....|++++... ....|-++|+||+|....+.+
T Consensus 78 yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n-cdsv~~vLVGNK~d~~~RrvV 130 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN-CDSVPKVLVGNKNDDPERRVV 130 (198)
T ss_pred ccCCceEEEEEECcchhhhHhHHHHHHHHHhc-CccccceecccCCCCccceee
Confidence 999999999999987 677889999887654 457899999999999876544
No 168
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.60 E-value=2.5e-14 Score=120.48 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=90.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh-hhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~ 189 (254)
......+|+++|.+|+|||||+|.+++.....++...++|...........+..+.+|||||+.+..... .........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3455678999999999999999999998876677777777776666666778899999999998664321 222222334
Q ss_pred HHHcc--CccEEEEEEeCCC-CchhH-HHHHHHhhcccCC--CCCEEEEEecCCCCChHh
Q 025346 190 RSAGI--NADCIVVLVDACK-APERI-DEILEEGVGDHKD--KLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 190 ~~~~~--~~d~iv~vid~~~-~~~~~-~~~~~~~~~~~~~--~~piivV~nK~Dl~~~~~ 243 (254)
..++. ..++++||..+.. ..... ...+..+...++. ..++++|.||+|...++.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 44443 6788999876653 22222 2333333332332 257999999999986654
No 169
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.60 E-value=1.1e-14 Score=116.69 Aligned_cols=121 Identities=26% Similarity=0.295 Sum_probs=86.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|..|+||||+++++....... ...|.......+...+..+.+||.+| +..... .|..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~~~~~~~~~~d~gG--~~~~~~-------~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIKYKGYSLTIWDLGG--QESFRP-------LWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEEETTEEEEEEEESS--SGGGGG-------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceeeeCcEEEEEEeccc--cccccc-------cceee
Confidence 556799999999999999999999776542 22222333445566889999999999 433322 34456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+..++++|||+|+++. ..+....+..++... ..+.|+++++||+|+.+.-...+
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~ 135 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEE 135 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHH
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhH
Confidence 8899999999999973 345555566655532 35799999999999976544333
No 170
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=1.3e-14 Score=119.45 Aligned_cols=114 Identities=25% Similarity=0.258 Sum_probs=78.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccc------------------------------cCCCCceEEEEEEEEecCCeeEE
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEYQMI 166 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~~~~ 166 (254)
+++++|.+++|||||+++++...-... ....++|.+.....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999976432211 11256677777777778888999
Q ss_pred EEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+|||||+.+ +...+...+..+|++++|+|++.+..........+.... ...++++|+||+|+..
T Consensus 81 liDTpG~~~---------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQ---------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHH---------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 999999522 112233457899999999999886544333222222222 1245788999999975
No 171
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.60 E-value=2.4e-14 Score=119.72 Aligned_cols=90 Identities=32% Similarity=0.358 Sum_probs=70.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|.+|+|||||++++.+.... +..++++|.....+.+...+..+++|||||+........ .........++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~--~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK--GRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccch--hHHHHHHHhhccC
Confidence 6899999999999999999987644 678889998888888778889999999999754321111 1223345668999
Q ss_pred cEEEEEEeCCCCc
Q 025346 197 DCIVVLVDACKAP 209 (254)
Q Consensus 197 d~iv~vid~~~~~ 209 (254)
|++++|+|+++..
T Consensus 79 d~il~V~D~t~~~ 91 (233)
T cd01896 79 DLILMVLDATKPE 91 (233)
T ss_pred CEEEEEecCCcch
Confidence 9999999997643
No 172
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-14 Score=110.40 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=92.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceE---EEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~---~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+++++|+.|+|||.|+.+|..+++.. +..+|.. ......+....+++++|||+| +++ ++.-...|
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--dssHTiGveFgSrIinVGgK~vKLQIWDTAG--QEr-------FRSVtRsY 78 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD--DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QER-------FRSVTRSY 78 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc--cccceeeeeecceeeeecCcEEEEEEeeccc--HHH-------HHHHHHHH
Confidence 579999999999999999999988752 2222221 111122334567899999999 433 34456678
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+++|.+.++|+|+++ ++..+..|+.+......+++-+++++||.||..++++.
T Consensus 79 YRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt 133 (214)
T KOG0086|consen 79 YRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT 133 (214)
T ss_pred hccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh
Confidence 999999999999976 67888899998887778899999999999999988875
No 173
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.59 E-value=2.4e-14 Score=137.47 Aligned_cols=124 Identities=27% Similarity=0.331 Sum_probs=90.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch----hhhhHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVR 190 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~ 190 (254)
..+++++|.+|+|||||+|++.+.+. .+++.+++|.+...+.+...+..+.++||||..+... ...++..... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~-~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-Y 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH-H
Confidence 45799999999999999999998876 4889999999988888888899999999999754321 1122221111 1
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
-....+|++++|+|+++..... .+..++. ..++|+++|+||+|+.+.+.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~l-~l~~ql~---e~giPvIvVlNK~Dl~~~~~i 130 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL-YLTLQLL---ELGIPCIVALNMLDIAEKQNI 130 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH-HHHHHHH---HcCCCEEEEEEchhhhhccCc
Confidence 1135899999999998854332 2333322 246899999999999765443
No 174
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=2.4e-14 Score=115.87 Aligned_cols=122 Identities=25% Similarity=0.322 Sum_probs=82.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc-----------------ccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~-----------------~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~ 175 (254)
..+|+++|+.++|||||+.+++...... .....+.|.......+. ..+..+.++||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4589999999999999999998543210 00112233333333444 7788999999999422
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
+.......+..+|++++|+|+.++............. ..++|+++|+||+|+. ..+..+..
T Consensus 83 ---------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~--~~~~p~ivvlNK~D~~-~~~~~~~~ 143 (188)
T PF00009_consen 83 ---------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILR--ELGIPIIVVLNKMDLI-EKELEEII 143 (188)
T ss_dssp ---------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHH--HTT-SEEEEEETCTSS-HHHHHHHH
T ss_pred ---------eeecccceecccccceeeeeccccccccccccccccc--ccccceEEeeeeccch-hhhHHHHH
Confidence 3344555688999999999999877665554444443 3478999999999999 43333333
No 175
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.58 E-value=5.8e-14 Score=114.25 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=81.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccc---------------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (254)
.+++++|..++|||||+++++..... ......++|.+.....+...+..+.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 47999999999999999999854100 011244566666666666778899999999952
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHh
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE 243 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~ 243 (254)
.+.......+..+|++++|+|+..+.......+...+.. .++| +++|+||+|+....+
T Consensus 77 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~ 135 (195)
T cd01884 77 ---DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEE 135 (195)
T ss_pred ---HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHH
Confidence 233444556789999999999988765544433333332 3466 789999999975443
No 176
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.57 E-value=4.2e-14 Score=118.51 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=78.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc-----cc------------CCCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~-----~~------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
+++++|..|+|||||+++++...-.. +. ...+.|.......+.+.+.++.+|||||+.+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 37899999999999999998642110 11 111223344455667788999999999964321
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+..+++.+|++++|+|++++.......+..... ..++|+++|+||+|+...
T Consensus 79 -------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~--~~~~P~iivvNK~D~~~a 131 (237)
T cd04168 79 -------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLR--KLNIPTIIFVNKIDRAGA 131 (237)
T ss_pred -------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccccCC
Confidence 23445678899999999999865544333333333 246899999999999853
No 177
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=2.6e-14 Score=110.03 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=66.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||+|++.+..+. +..|.. .+... .+|||||... .....+ ......++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~~------~~~~~---~~iDt~G~~~----~~~~~~-~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQA------VEYND---GAIDTPGEYV----ENRRLY-SALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccccee------EEEcC---eeecCchhhh----hhHHHH-HHHHHHhhcC
Confidence 7999999999999999999987642 222211 11111 6899999421 111122 2233457899
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++........+.... ..|+++|+||+|+.+.
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEA 103 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCc
Confidence 999999999875433222232221 2499999999999753
No 178
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=3.4e-14 Score=115.71 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=74.2
Q ss_pred cEEEEEeCCCCChHHHHH-HHhcCcccc---ccCCCCceE--EEEE----------EEEecCCeeEEEEecCCCcccchh
Q 025346 116 GYVAVLGKPNVGKSTLAN-QMIGQKLSI---VTNKPQTTR--HRIL----------GICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~-~~~~~~~~~---~~~~~~tt~--~~~~----------~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
.+|+++|.+|+|||||+. ++....+.. ...+.+|.. +... ..+++....+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 589999999999999996 555443310 122333331 1111 124455678999999994321
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCC--CchhHHH-HHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACK--APERIDE-ILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+ ...+++.+|++++|+|+++ +++.+.. |+..+.. ...+.|+++|+||+||.+
T Consensus 80 -~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~-~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -D-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRH-FCPRVPVILVGCKLDLRY 134 (195)
T ss_pred -h-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHH-hCCCCCEEEEEEchhccc
Confidence 1 1235789999999999987 3455543 5554433 235789999999999964
No 179
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.56 E-value=2.4e-13 Score=116.42 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=80.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccC--------CCCce-EEEEEEEEecCC--eeEEEEecCCCcccch-----h
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~--------~~~tt-~~~~~~~~~~~~--~~~~liDtpG~~~~~~-----~ 179 (254)
.+|+++|.+|+|||||+|++++..+..... ...++ ...........+ .++.+|||||+++... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 589999999999999999999987653322 22232 222223333334 5799999999876432 1
Q ss_pred hhhHHHHHHHHH------------Hc--cCccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 180 MLDSMMMKNVRS------------AG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 180 ~~~~~~~~~~~~------------~~--~~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+..+..+++.. .+ ..+|+++|+++.+. +....+..+...+. .++|+++|+||+|++.++++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 111111111111 11 15789999999875 45454333333232 36899999999999987766
Q ss_pred HHHHH
Q 025346 245 AKKLE 249 (254)
Q Consensus 245 ~~~~~ 249 (254)
.....
T Consensus 162 ~~~k~ 166 (276)
T cd01850 162 KEFKQ 166 (276)
T ss_pred HHHHH
Confidence 54433
No 180
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=1.6e-15 Score=115.48 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=93.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccC----CCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN----KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~----~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
-..+++++|..-+|||||+-+++..+|...+- ..+.++.. .+......+.||||+| +++++.+.+.+
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~---n~ed~ra~L~IWDTAG--QErfHALGPIY---- 82 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKV---NVEDCRADLHIWDTAG--QERFHALGPIY---- 82 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccc---ccccceeeeeeeeccc--hHhhhccCceE----
Confidence 35689999999999999999999888742110 01111111 1223455799999999 67666666554
Q ss_pred HHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 190 RSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+++.+++++|+|+++ +++.++.|..++....+..+-++||+||+||..++.+...
T Consensus 83 ---YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~q 139 (218)
T KOG0088|consen 83 ---YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQ 139 (218)
T ss_pred ---EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHH
Confidence 899999999999987 7888999999999888888999999999999988877543
No 181
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=120.48 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=92.4
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+.+++++|.+|+||||+||+++......++..+.++..........++..+.+|||||+++.. ..+..+...+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~--~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK--DKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch--hhhHHHHHHHHH
Confidence 345668899999999999999999977766666666555544444445666889999999998753 223445567788
Q ss_pred HccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++...|++++++++.+..-..+ ..+.+++. ..-+.|+++|+|.+|...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~-~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVII-LGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHH-hccCceeEEEEehhhhhcc
Confidence 8999999999999988543333 23333332 2344899999999999766
No 182
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.55 E-value=5.1e-14 Score=113.76 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=74.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+++++|++|+|||||++++....+.. .+.++........ ..+....+.+|||||.. .+..... ..+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~~~~-------~~~ 70 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQE--EYERLRP-------LSY 70 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCCh--hccccch-------hhc
Confidence 479999999999999999998766532 2222322222222 23334568899999943 2222211 236
Q ss_pred cCccEEEEEEeCCCC--chhHHH-HHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACKA--PERIDE-ILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..++++++++|.++. +..+.. |+..+.+ ...+.|+++|+||+|+..
T Consensus 71 ~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 71 SKAHVILIGFAVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhh
Confidence 789999999999763 444443 4444433 345799999999999854
No 183
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.55 E-value=1.5e-13 Score=113.52 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=79.7
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
......+++++|++|+|||||+++++...+.. ..+..+..........+.....+.+|||+|. ..+..+ .
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~-------~ 75 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGL-------R 75 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------h
Confidence 34455799999999999999999887765531 1111111121222223455678999999993 322222 2
Q ss_pred HHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..++..++++++|+|.++ ++..+..|+..+... ..+.|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDR 128 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccc
Confidence 345678999999999987 345555666555433 357899999999998653
No 184
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.55 E-value=2.6e-13 Score=106.39 Aligned_cols=123 Identities=28% Similarity=0.357 Sum_probs=76.7
Q ss_pred EEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh-hhhHHHH---HHHHHH
Q 025346 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMM---KNVRSA 192 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~-~~~~~~~---~~~~~~ 192 (254)
|+++|.+|+|||||++.+.+.. ....+..++.|........ . ..+.+|||||+...... .....+. ..+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999543 3334455555554333222 2 28999999997654211 1111111 222233
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
....+++++++|...........+...+.. .+.|+++|+||+|+..+.+..
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~ 129 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELA 129 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHH
Confidence 345788999999987544433333333332 358999999999998765543
No 185
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=1.6e-13 Score=117.67 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+....+|+++|.+|+||||++|++++.+...++...+++...........+..+.+|||||+.+... .+....+...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~--~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY--INDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH--HHHHHHHHHH
Confidence 44567789999999999999999999988765666665554444444455788999999999876532 2222222232
Q ss_pred HHc--cCccEEEEEEeCC--CCchhHHHHHHHhhcccC--CCCCEEEEEecCCCCChH
Q 025346 191 SAG--INADCIVVLVDAC--KAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~--~~~d~iv~vid~~--~~~~~~~~~~~~~~~~~~--~~~piivV~nK~Dl~~~~ 242 (254)
.++ ...|+++||.... +........+..+...++ ...++++|+|++|..+++
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 222 3799999996543 322222333333333332 235799999999988553
No 186
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=115.03 Aligned_cols=122 Identities=23% Similarity=0.286 Sum_probs=91.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|.+|+|||+|+.++++..+. ..+.+|..+.+. ..+++....+.|+||+| +..+..+.. .+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------LY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------Hh
Confidence 468999999999999999999999984 556666554444 34456667899999999 333333332 34
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChHhHHHH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+..+++.++|+++++ +++.+..++..+.+... .++|+++|+||+|+...+++...
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~e 129 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEE 129 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHH
Confidence 778899999999987 67777787777754433 45799999999999987666543
No 187
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.53 E-value=2.4e-13 Score=115.97 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=80.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCc-----ccccc------------CCCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQK-----LSIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
+|+++|.+++|||||+++++... ...+. ...+.|.......+.+.+.++.++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 47899999999999999997421 11111 2335566666667778899999999999543
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+...+...++.+|++++|+|+..+.......+..... ..++|+++++||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~--~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQAD--RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECCCCCC
Confidence 2234556688999999999998866544433333333 34689999999999975
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.53 E-value=2.2e-13 Score=127.64 Aligned_cols=118 Identities=22% Similarity=0.268 Sum_probs=84.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.|+++|..++|||||++++.+..... ....++.|.+.....+...+..+.+|||||. ..+...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh---------e~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH---------EKFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH---------HHHHHHHHhhhc
Confidence 58999999999999999999743211 2234566766666666666789999999993 223345566688
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhHH
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~~ 245 (254)
++|++++|+|++++..........++.. .++| +++|+||+|+.+++.+.
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHH
Confidence 9999999999998653333222223332 3577 99999999999876543
No 189
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=4e-14 Score=119.52 Aligned_cols=122 Identities=26% Similarity=0.309 Sum_probs=94.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCee-EEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~-~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.+.++|.|++|||||+|++...+.. +..|++||..+..+.+.+++.. +.+-|.||+.... .++..+-..+...+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA--h~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA--HMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccc--cccCcccHHHHHHHHh
Confidence 5889999999999999999998875 8999999999998888877665 9999999998764 3333344566777899
Q ss_pred ccEEEEEEeCCCC-----chhHHHHHHHhh--cccCCCCCEEEEEecCCCCCh
Q 025346 196 ADCIVVLVDACKA-----PERIDEILEEGV--GDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 196 ~d~iv~vid~~~~-----~~~~~~~~~~~~--~~~~~~~piivV~nK~Dl~~~ 241 (254)
++.++||+|++.. ++.+...+.++- .....+.|.++|+||+|+.+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 9999999999874 344443333322 222367899999999999643
No 190
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.53 E-value=2.9e-13 Score=115.32 Aligned_cols=115 Identities=22% Similarity=0.225 Sum_probs=77.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccc-----cc----------cCC------CCceEEEEEEEEecCCeeEEEEecCCCc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLS-----IV----------TNK------PQTTRHRILGICSGPEYQMILYDTPGII 174 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~-----~~----------~~~------~~tt~~~~~~~~~~~~~~~~liDtpG~~ 174 (254)
++|+++|++|+|||||+++++...-. .+ .++ .+.+.......+.+.+..+.+|||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999853211 01 011 1122233444667888999999999953
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+.. ......+..+|++++|+|++.+.......+..... ..++|+++++||+|+...
T Consensus 83 df~---------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~--~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFS---------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCR--LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHH---------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHH--hcCCCEEEEEECCccCCC
Confidence 321 22334567899999999998865443333323332 247899999999998754
No 191
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=3.6e-13 Score=111.17 Aligned_cols=120 Identities=27% Similarity=0.270 Sum_probs=80.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.+++++|++|+|||||++++.+..+.................... ....+.+|||+|. .. +...+..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq--~~-------~~~~~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ--EE-------YRSLRPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH--HH-------HHHHHHHHhc
Confidence 689999999999999999999988753222221222222222222 2567999999993 22 2234556689
Q ss_pred CccEEEEEEeCCC--Cch-hHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 195 NADCIVVLVDACK--APE-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~-~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+++++++++|... ... ....|...+......+.|+++|+||+|+......
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 9999999999986 233 3344444433333347999999999999887543
No 192
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.52 E-value=2.8e-13 Score=103.91 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+|+++|..|+||||+++++.+.....+ ..|..........++..+.+||..| + ..+++.|..|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i----~pt~gf~Iktl~~~~~~L~iwDvGG--q-------~~lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI----SPTLGFQIKTLEYKGYTLNIWDVGG--Q-------KTLRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc----CCccceeeEEEEecceEEEEEEcCC--c-------chhHHHHHHhh
Confidence 356899999999999999999998764322 2233333445567789999999999 2 33456788999
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~ 240 (254)
..+|++|||+|+++. .++....+...+.. ...+.|+++++||.|+..
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 999999999999873 34444445444432 235689999999999974
No 193
>COG2262 HflX GTPases [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=118.72 Aligned_cols=130 Identities=30% Similarity=0.340 Sum_probs=99.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+.|+++|.+|+|||||+|.+.+.... +.+..++|.+.....+... +..+.+-||-|+...-++.+-..| ..+.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF-ksTL 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF-KSTL 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH-HHHH
Confidence 345678999999999999999999987754 6777788877776666554 688999999999988777776666 4555
Q ss_pred HHccCccEEEEEEeCCCCc-hhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKAP-ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~-~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
.....+|++++|+|++++. .........++... ...+|+++|.||+|++....
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 6688999999999999962 22222233334433 35589999999999987665
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.52 E-value=8.6e-14 Score=130.55 Aligned_cols=116 Identities=27% Similarity=0.308 Sum_probs=82.0
Q ss_pred eCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEE
Q 025346 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (254)
Q Consensus 122 G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~ 201 (254)
|.+|+|||||+|++.+... .+++.+++|.+...+....++..+.+|||||..+......+......+ .....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEE
Confidence 8899999999999999876 478899999988877777778889999999965432221121111111 11357999999
Q ss_pred EEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 202 vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
|+|+++.... .....+.. ..+.|+++|+||+|+.+...
T Consensus 79 VvDat~ler~-l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~ 116 (591)
T TIGR00437 79 VVDASNLERN-LYLTLQLL---ELGIPMILALNLVDEAEKKG 116 (591)
T ss_pred EecCCcchhh-HHHHHHHH---hcCCCEEEEEehhHHHHhCC
Confidence 9999874332 22222222 34789999999999975443
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.51 E-value=1.3e-13 Score=125.09 Aligned_cols=118 Identities=20% Similarity=0.179 Sum_probs=82.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc------------------------------ccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~ 162 (254)
.+..+++++|..++|||||+++++...-.. ....+++|.+.....+...+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 345689999999999999999998442111 11256888888888888889
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+.+|||||+.+.. ......+..+|++++|+|+++ +..........+.... ...|+++|+||+|+..
T Consensus 84 ~~i~liDtpG~~~~~---------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFV---------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccch---------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 999999999953211 222233678999999999987 5444333333333222 1246999999999975
No 196
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.51 E-value=4.2e-13 Score=125.49 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=81.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
..+.++++++|+.++|||||++++.+..+. ....++.|.......+...+ ..+.||||||... +.. .+.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~--F~~-------~r~ 153 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA--FTS-------MRA 153 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcc--hhh-------HHH
Confidence 456789999999999999999999987765 34445666654444444433 3899999999532 222 223
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+..+|++++|+|+.++............. ..++|+++++||+|+..
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~--~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAK--AANVPIIVAINKIDKPE 201 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHH--HcCCCEEEEEECccccc
Confidence 4578899999999998754332222112222 34789999999999964
No 197
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.51 E-value=5.4e-13 Score=110.55 Aligned_cols=112 Identities=26% Similarity=0.353 Sum_probs=71.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCC---------------CCceEE--EEEEEEe--------cCCeeEEEEec
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK---------------PQTTRH--RILGICS--------GPEYQMILYDT 170 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~---------------~~tt~~--~~~~~~~--------~~~~~~~liDt 170 (254)
++++++|..++|||||+.+++...-...... .+.|.. .....+. ..+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3689999999999999999985431111011 111111 1111222 23678999999
Q ss_pred CCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHH-HHHHhhcccCCCCCEEEEEecCCCC
Q 025346 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 171 pG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
||..+.. ......+..+|++++|+|+.++...... .+.... ..++|+++|+||+|+.
T Consensus 81 PG~~~f~---------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~---~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS---------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQAL---KERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccH---------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHH---HcCCCEEEEEECCCcc
Confidence 9964422 3345567899999999999986544332 333222 2357999999999986
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.51 E-value=3.9e-13 Score=128.72 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+.+.|+++|..++|||||++++....+. .....+.|.......+.+.+..+.||||||+... .. .+..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F--~~-------m~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF--TA-------MRAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccc--hh-------HHHh
Confidence 467889999999999999999999877664 3344556655554556666788999999995432 22 2234
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+..+|++++|+|+.++............. ..++|+++|+||+|+..
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~--~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAK--AAGVPIIVAINKIDKPG 403 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHH--hcCCcEEEEEECccccc
Confidence 567899999999998864332222112222 35689999999999965
No 199
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=2.3e-13 Score=112.31 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=84.8
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccccc-CCCCceEEEEEEEEecCCeeEEEEecCCCcccchh--hhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~ 193 (254)
+|+++|.+|+||||++|.+++....... ...+.|...........+..+.++||||+.+.... .+.......+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6999999999999999999998865433 23344555555555778899999999999765432 22222333344456
Q ss_pred cCccEEEEEEeCCCCchhHHHHHHHhhcccCC--CCCEEEEEecCCCCChHhHHHHHH
Q 025346 194 INADCIVVLVDACKAPERIDEILEEGVGDHKD--KLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~--~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
.+.+++++|+...+........+..+...++. ...++||.|.+|...+..+++.++
T Consensus 82 ~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~ 139 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLK 139 (212)
T ss_dssp T-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHH
T ss_pred CCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHh
Confidence 78999999999996444444444444443332 246999999999988776554433
No 200
>CHL00071 tufA elongation factor Tu
Probab=99.50 E-value=5.1e-13 Score=120.59 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=85.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc---------------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|.+++|||||++++++.... ......+.|.+.....+..++.++.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 44568999999999999999999864211 011235666666555666677889999999942
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhH
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEI 244 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~ 244 (254)
.+.......+..+|++++|+|+..+..........+.. ..++| +++|+||+|+.+.++.
T Consensus 87 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~--~~g~~~iIvvvNK~D~~~~~~~ 146 (409)
T CHL00071 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAK--QVGVPNIVVFLNKEDQVDDEEL 146 (409)
T ss_pred ------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEEEccCCCCHHHH
Confidence 22344445577899999999999876554444444443 23578 7789999999876553
No 201
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.49 E-value=4.4e-14 Score=112.57 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=68.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+.++++|++|+|||+|..++..++... . .|......... ...+..+.++|+||...-+ ..+...+ .+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--T--~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-----~~~~~~~-~~ 72 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--T--VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR-----SKLLDEL-KY 72 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-----B-----SSEEEECCGSSTCGTCECEEEETT-HCCC-----HHHHHHH-HH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC--e--eccccCCceEEeecCCCCEEEEEECCCcHHHH-----HHHHHhh-hc
Confidence 4579999999999999999999874321 1 11111112111 2345689999999954332 2221221 24
Q ss_pred ccCccEEEEEEeCCCCc---hhHHHHHHHhhcc---cCCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~---~~~~~~~~~~~~~---~~~~~piivV~nK~Dl~~~~ 242 (254)
...+.+||||+|++... ....+.+..++.. ....+|++|++||.|+....
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 67899999999998522 3334444444432 24678999999999998654
No 202
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.49 E-value=2.8e-13 Score=111.78 Aligned_cols=112 Identities=26% Similarity=0.375 Sum_probs=71.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccccc------------------CCCCceEEEEEEEE-----ecCCeeEEEEecCC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------NKPQTTRHRILGIC-----SGPEYQMILYDTPG 172 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~------------------~~~~tt~~~~~~~~-----~~~~~~~~liDtpG 172 (254)
++++++|+.++|||||+++++........ ...+.+.......+ +.....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 36899999999999999999875432110 00111111111111 23357899999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..+. .......+..+|++++|+|+++...... .++.... ..+.|+++|+||+|+.
T Consensus 81 ~~~f---------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~---~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF---------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAI---LEGLPIVLVINKIDRL 136 (213)
T ss_pred Ccch---------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---HcCCCEEEEEECcccC
Confidence 5432 1234455789999999999987654332 2222222 2358999999999986
No 203
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.3e-13 Score=125.58 Aligned_cols=122 Identities=28% Similarity=0.285 Sum_probs=94.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++++|+||+|||||+|++.+.... +++.|++|.+...+.+...+..+.++|+||.-.-...+.++...+.+.. -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 346999999999999999999998876 9999999999999999999999999999997654444444433222222 35
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+|+||-|+|+++-..++.-.+ +...-+.|+++++|++|....+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl----QLlE~g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL----QLLELGIPMILALNMIDEAKKR 124 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH----HHHHcCCCeEEEeccHhhHHhc
Confidence 7899999999998444433222 2223578999999999987653
No 204
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=4e-13 Score=102.57 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=74.4
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 197 (254)
++|++|+|||||++++.+.... ......+......... ......+.+|||||..... .........+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR---------SLRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHH---------hHHHHHhcCCC
Confidence 4799999999999999987652 1122222222222222 2336789999999954321 22245578999
Q ss_pred EEEEEEeCCCCchh--HHHH-HHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 198 CIVVLVDACKAPER--IDEI-LEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 198 ~iv~vid~~~~~~~--~~~~-~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++++|+|+++.... ...+ ..........+.|+++|+||+|+.......
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 99999999985332 2222 122233345679999999999998765443
No 205
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.48 E-value=2.1e-13 Score=116.40 Aligned_cols=132 Identities=24% Similarity=0.250 Sum_probs=95.6
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
-|.++|.|++|||||++.+...+.. +.+||+||..+..+.+.. .+.++.+-|.||+++...+.. .+-..+...+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~--GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGV--GLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCC--CccHHHHHHHHh
Confidence 3789999999999999999988876 899999999988888774 566799999999987653322 122445667889
Q ss_pred ccEEEEEEeCCCC-----chhHHHHHHHhhcc--cCCCCCEEEEEecCCCC-ChHhHHHHHHHH
Q 025346 196 ADCIVVLVDACKA-----PERIDEILEEGVGD--HKDKLPILLVLNKKDLI-KPGEIAKKLEVT 251 (254)
Q Consensus 196 ~d~iv~vid~~~~-----~~~~~~~~~~~~~~--~~~~~piivV~nK~Dl~-~~~~~~~~~~~~ 251 (254)
+.++++|+|++.. .+.......++.+. .-.+.|.+||+||+|+. ..++.+...+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l 301 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKAL 301 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHH
Confidence 9999999999852 22333333333222 22578999999999954 445555444433
No 206
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.48 E-value=1.1e-12 Score=107.49 Aligned_cols=118 Identities=23% Similarity=0.228 Sum_probs=70.5
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEEEEe---------------------------cCC-----
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICS---------------------------GPE----- 162 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~~~~---------------------------~~~----- 162 (254)
+++++|+.|+|||||+..+.+..... .....+.+.......+. ..+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999997542100 00001111111100000 112
Q ss_pred -eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-c-hhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 163 -YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-P-ERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 163 -~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~-~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..+.||||||.. .+...+...+..+|++++|+|++++ . ......+..+ .. ....|+++|+||+|+.
T Consensus 82 ~~~i~~iDtPG~~---------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~-~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 82 VRHVSFVDCPGHE---------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EI-MGLKHIIIVQNKIDLV 150 (203)
T ss_pred ccEEEEEECCChH---------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HH-cCCCcEEEEEEchhcc
Confidence 679999999931 2334556667889999999999873 2 2222333222 21 1225799999999998
Q ss_pred ChHhHH
Q 025346 240 KPGEIA 245 (254)
Q Consensus 240 ~~~~~~ 245 (254)
...+..
T Consensus 151 ~~~~~~ 156 (203)
T cd01888 151 KEEQAL 156 (203)
T ss_pred CHHHHH
Confidence 765443
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.47 E-value=9.3e-13 Score=109.20 Aligned_cols=113 Identities=21% Similarity=0.235 Sum_probs=76.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcc------------------------------ccccCCCCceEEEEEEEEecCCeeEE
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKL------------------------------SIVTNKPQTTRHRILGICSGPEYQMI 166 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~~~ 166 (254)
+|+++|+.++|||||+.+++...- .......++|.+.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 378999999999999999963210 00112346677777777888899999
Q ss_pred EEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-------ch-hHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PE-RIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-------~~-~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
+|||||+.+ +...+...+..+|++++|+|+++. .. .....+ ..... ....|+++|+||+|+
T Consensus 81 liDtpG~~~---------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRD---------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHH---------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEcccc
Confidence 999999422 123344557789999999999873 11 111211 12221 123689999999999
Q ss_pred CC
Q 025346 239 IK 240 (254)
Q Consensus 239 ~~ 240 (254)
..
T Consensus 150 ~~ 151 (219)
T cd01883 150 VT 151 (219)
T ss_pred cc
Confidence 83
No 208
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.47 E-value=1e-12 Score=112.16 Aligned_cols=114 Identities=26% Similarity=0.304 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc-----ccC------------CCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~-----~~~------------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
+|+++|.+|+|||||+++++...... +.. ..+.+.......+.+.+..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 47899999999999999997542110 100 011222233345566788999999999532
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+...+...+..+|++++|+|++.+.......+..... ..++|+++|+||+|+...
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~--~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFAD--EAGIPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECCccCCC
Confidence 1233445678899999999998865443222222222 246899999999999865
No 209
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.46 E-value=7.7e-13 Score=104.16 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=66.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||+|++.+... .. ..|... .+... .+|||||....... ........+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~~~~~v---~~~~~----~~iDtpG~~~~~~~-----~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---RKTQAV---EFNDK----GDIDTPGEYFSHPR-----WYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---ccceEE---EECCC----CcccCCccccCCHH-----HHHHHHHHHhcC
Confidence 799999999999999999886531 11 122111 11111 26999996332211 112233447899
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++.......++... ..+.|+++|+||+|+.+.
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc
Confidence 99999999987544333443332 246799999999998653
No 210
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.46 E-value=1.1e-12 Score=124.82 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=79.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--E--ecCCeeEEEEecCCCcccchhhhhHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--C--SGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (254)
..+.+.|+++|..++|||||++++....+. ....++.|....... . ...+..+.||||||.. .+..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe---------~F~~ 310 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE---------AFSS 310 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHH---------HHHH
Confidence 356789999999999999999999877664 233334443221111 1 2246889999999942 2223
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 188 NVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+...+..+|++++|+|+.++..... +.+.. .. ..++|+++|+||+|+...
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~-~k--~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAINY-IQ--AANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHHH-HH--hcCceEEEEEECCCcccc
Confidence 34456788999999999988643322 22222 22 356899999999999753
No 211
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.46 E-value=3.2e-13 Score=114.52 Aligned_cols=90 Identities=36% Similarity=0.441 Sum_probs=75.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
-.++++|.|++|||||++++.+.+.. +.++++||...+.+.+.+.+..++++|+||+.......... -.+..+.++.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr--G~~vlsv~R~ 140 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR--GRQVLSVARN 140 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCCC--cceeeeeecc
Confidence 47999999999999999999998876 89999999999999999999999999999987654333211 0334566889
Q ss_pred ccEEEEEEeCCCC
Q 025346 196 ADCIVVLVDACKA 208 (254)
Q Consensus 196 ~d~iv~vid~~~~ 208 (254)
||+|++|+|+...
T Consensus 141 ADlIiiVld~~~~ 153 (365)
T COG1163 141 ADLIIIVLDVFED 153 (365)
T ss_pred CCEEEEEEecCCC
Confidence 9999999999753
No 212
>PLN03126 Elongation factor Tu; Provisional
Probab=99.46 E-value=1.8e-12 Score=118.60 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccc---------------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
...+..+++++|..++|||||+++++..... ......+.|.+.....+...+..+.++||||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3455678999999999999999999853211 1122345566655556667788999999999422
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhH
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEI 244 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~ 244 (254)
+.......+..+|++++|+|+..+.......+..+... .++| +++++||+|+.+.++.
T Consensus 157 ---------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~ 215 (478)
T PLN03126 157 ---------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEEL 215 (478)
T ss_pred ---------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHH
Confidence 22344455678999999999998765544333333332 3577 7889999999875543
No 213
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.45 E-value=4e-13 Score=102.99 Aligned_cols=123 Identities=20% Similarity=0.301 Sum_probs=89.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE---EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL---GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~---~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+++++|.+.+|||+|+..+...+++..++ |....+-.. ..-++...++++|||+| +++ ++..+.+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag--qer-------frsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG--QER-------FRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc--hHH-------HHHHHHH
Confidence 3579999999999999999999999875543 322222111 12234467899999999 443 3455667
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CC-CCEEEEEecCCCCChHhHHHH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHK-DK-LPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~-~piivV~nK~Dl~~~~~~~~~ 247 (254)
|+++.-++++|+|+++ +++.+..|+.+...... +. +-+.+|++|+||..++++...
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~E 137 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAE 137 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHH
Confidence 8999999999999987 67888888887554433 33 446899999999998887543
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=1.6e-12 Score=118.00 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=79.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc--cc----------------------c------ccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------I------VTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~--~~----------------------~------~~~~~~tt~~~~~~~~~~~~ 162 (254)
.+..+++++|+.++|||||+++++... +. . .....+.|.+.....+...+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 445689999999999999999998521 10 0 11234667777777777888
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC---chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~---~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..+.+|||||.. .+.......+..+|++++|+|++++ ..........+.... ...|+++|+||+|+.
T Consensus 85 ~~i~iiDtpGh~---------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 85 YEVTIVDCPGHR---------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSV 154 (426)
T ss_pred eEEEEEECCCHH---------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhcc
Confidence 999999999932 1223344456889999999999885 222111111222222 235799999999997
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
+
T Consensus 155 ~ 155 (426)
T TIGR00483 155 N 155 (426)
T ss_pred C
Confidence 4
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.45 E-value=2e-12 Score=116.16 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=82.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc---------------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|+.++|||||++++++.... ......+.|.+.....+...+..+.++||||+.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 44568999999999999999999863110 011245667766655666677889999999942
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhH
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEI 244 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~ 244 (254)
.+.......+..+|++++|+|+..+.......+..+... .++| +++|+||+|+.+.+++
T Consensus 87 ------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~ 146 (394)
T PRK12736 87 ------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEEL 146 (394)
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHH
Confidence 222334445678999999999988654444333333332 3577 6789999999865443
No 216
>PLN03127 Elongation factor Tu; Provisional
Probab=99.45 E-value=1.7e-12 Score=118.07 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccc---------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLS---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|..++|||||++++.+. ... ......+.|.+.....+..++.++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 44568999999999999999999732 100 0122367788777777777788999999999632
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhH
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEI 244 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~ 244 (254)
+.......+..+|++++|+|+.++..........++.. .++| +++|+||+|+.+.++.
T Consensus 137 -------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~ 195 (447)
T PLN03127 137 -------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEEL 195 (447)
T ss_pred -------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHH
Confidence 22333334567999999999988655544444444432 3578 5789999999875443
No 217
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.44 E-value=1.2e-12 Score=122.36 Aligned_cols=116 Identities=23% Similarity=0.223 Sum_probs=74.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe------------------cCCeeEEEEecCCCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGII 174 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~------------------~~~~~~~liDtpG~~ 174 (254)
.+.+.|+++|.+++|||||++++.+..+.. ....++|.......+. .....+.+|||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 356789999999999999999999886532 1122233321111111 011248899999942
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+.. ....++..+|++++|+|++++...........+. ..+.|+++|+||+|+..
T Consensus 81 --~f~~-------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~--~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 --AFTN-------LRKRGGALADLAILIVDINEGFKPQTQEALNILR--MYKTPFVVAANKIDRIP 135 (590)
T ss_pred --hHHH-------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHH--HcCCCEEEEEECCCccc
Confidence 2222 2334578999999999998854433322222222 24689999999999974
No 218
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.44 E-value=1.7e-12 Score=124.42 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc-----cccC------------CCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~~~------------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+.++|+++|..++|||||+++++...-. .+.+ ..++|.......+.+.+..+.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 34568999999999999999999743211 1111 345666666777788899999999999754
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.. ......+..+|++++|+|+.++.......+..... ..++|+++|+||+|+...+
T Consensus 88 ~~---------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~--~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FT---------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQAN--RYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hh---------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHH--HcCCCEEEEEECCCCCCCC
Confidence 22 22345578899999999998865544333333333 2468999999999998643
No 219
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.43 E-value=5.4e-13 Score=100.55 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=87.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
...+.++|-.++|||||+|.+....+. .+-..|.......++.+...+.+||.|| ++.+.. .|..+.+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrs-------mWerycR 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRS-------MWERYCR 87 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHH-------HHHHHhh
Confidence 346899999999999999998876653 3444455555556677788999999999 554444 4556789
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++++|+||+|++++ .+..+..+..++... -.++|+++.+||.|+...-.-.
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~ 141 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI 141 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH
Confidence 99999999999883 233444555544432 3679999999999998764433
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.43 E-value=3.5e-12 Score=114.71 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=80.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC-------ccc--------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ-------KLS--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~-------~~~--------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|..++|||||++++++. ++. ......+.|.+.....+..++..+.++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 44568999999999999999999862 110 011234666666555666677889999999952
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEE-EEEecCCCCChHh
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGE 243 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pii-vV~nK~Dl~~~~~ 243 (254)
.+.......+..+|++++|+|+..+.......+..... ..++|.+ +|+||+|+.+.++
T Consensus 87 ------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~--~~gi~~iivvvNK~Dl~~~~~ 145 (396)
T PRK12735 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR--QVGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred ------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEEEecCCcchHH
Confidence 22244445577899999999998865443322223332 2457855 6799999986433
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.43 E-value=3e-12 Score=106.38 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=78.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccC-------------CCCceEE------------------------EEEEEEe
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-------------KPQTTRH------------------------RILGICS 159 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~-------------~~~tt~~------------------------~~~~~~~ 159 (254)
+++++|..++|||||++++....+..... ..+.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999999998654321000 0011100 0001223
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc--cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
..+..+.++||||.... .......+ ..+|++++|+|+..+.......+..++. ..++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~~---------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~--~~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHERY---------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLAL--ALNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHHH---------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEECcc
Confidence 44678999999995221 12222223 3689999999998876665554444444 24689999999999
Q ss_pred CCChHhHHHHHHHH
Q 025346 238 LIKPGEIAKKLEVT 251 (254)
Q Consensus 238 l~~~~~~~~~~~~~ 251 (254)
+.++++..+....+
T Consensus 150 ~~~~~~~~~~~~~l 163 (224)
T cd04165 150 LAPANILQETLKDL 163 (224)
T ss_pred ccCHHHHHHHHHHH
Confidence 98876666555444
No 222
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.43 E-value=1.5e-12 Score=108.16 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=79.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe-cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
||+++|+.++||||+.+.+..+-.+......+.|.......+. .+...+.+||+||....- +. .+.......++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~-~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM-EN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT-HT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc-cc---cccccHHHHHhc
Confidence 6899999999999999999987655444555555555555553 566799999999954321 11 111222344789
Q ss_pred ccEEEEEEeCC-CCchhHHHHHHH---hhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 196 ADCIVVLVDAC-KAPERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 196 ~d~iv~vid~~-~~~~~~~~~~~~---~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
+.++|||+|+. +........+.. .+....+++.+.+.++|+|++.++...+....+
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~ 136 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDI 136 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHH
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHH
Confidence 99999999998 333332222222 222346889999999999999887665554443
No 223
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.42 E-value=4.7e-12 Score=119.24 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=82.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.|+++|..++|||||++++.+..... .....+.|.+........ ++..+.+|||||+. .+.......+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe---------~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE---------KFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH---------HHHHHHHHHh
Confidence 48899999999999999998743221 223346666554444433 45678999999942 2334455667
Q ss_pred cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCCChHhHHHHH
Q 025346 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~~~~~~~~ 248 (254)
..+|++++|+|+.++..........++... ++| +++|+||+|+.+++.+....
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~ 126 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVR 126 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHH
Confidence 899999999999987655444443444432 455 67999999998765554433
No 224
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.42 E-value=4e-12 Score=119.16 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=80.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCc--ccc---c----------cCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQK--LSI---V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~--~~~---~----------~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (254)
++|+++|+.++|||||+++++... +.. + ....+.|.......+.+.+..+.+|||||+.+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 479999999999999999998632 111 0 112245555555567788999999999995332
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCCchhH-HHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
...+...+..+|++++|+|+.++.... ..++.... ..++|+++|+||+|+...
T Consensus 78 -----~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~---~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 78 -----GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKAL---ELGLKPIVVINKIDRPSA 131 (594)
T ss_pred -----HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHH---HCCCCEEEEEECCCCCCc
Confidence 234456678899999999998865433 33333332 246899999999999653
No 225
>PRK09866 hypothetical protein; Provisional
Probab=99.42 E-value=5e-12 Score=116.69 Aligned_cols=74 Identities=24% Similarity=0.293 Sum_probs=51.5
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++.|+||||+.......+..... ..+..+|+|+||+|+.......+..+...++..+.+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 468899999986543232333332 35889999999999988554444445454544433469999999999975
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.42 E-value=5.3e-12 Score=113.53 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcc------c---------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL------S---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~------~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|..++|||||++++++... . ......+.|.+.....+...+..+.+|||||+.+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 4456899999999999999999974310 0 0112356777766666666778899999999532
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEE-EEEecCCCCChHhH
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEI 244 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pii-vV~nK~Dl~~~~~~ 244 (254)
+.......+..+|++++|+|+.++............. ..++|.+ +|+||+|+.+.++.
T Consensus 88 -------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~--~~gi~~iIvvvNK~Dl~~~~~~ 146 (394)
T TIGR00485 88 -------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLAR--QVGVPYIVVFLNKCDMVDDEEL 146 (394)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEEEecccCCHHHH
Confidence 2233344467899999999998865444333333333 2356755 68999999876543
No 227
>PRK10218 GTP-binding protein; Provisional
Probab=99.42 E-value=4.3e-12 Score=118.96 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=81.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--cccc-------------cCCCCceEEEEEEEEecCCeeEEEEecCCCcccch
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--~~~~-------------~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (254)
..++|+++|+.++|||||+++++... +... ....+.|.......+.+.+..+.+|||||..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG- 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence 35689999999999999999999632 2110 1123445555555667888999999999954332
Q ss_pred hhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+..++..+|++++|+|+.++............. ..++|.++|+||+|+...
T Consensus 83 --------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~--~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 83 --------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAF--AYGLKPIVVINKVDRPGA 135 (607)
T ss_pred --------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHH--HcCCCEEEEEECcCCCCC
Confidence 33445678999999999998865433322222222 246899999999999643
No 228
>PRK12739 elongation factor G; Reviewed
Probab=99.41 E-value=3.8e-12 Score=121.96 Aligned_cols=118 Identities=20% Similarity=0.255 Sum_probs=85.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc-----ccccc------------CCCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+.++++++|..++|||||+++++... ...+. ...++|.......+.+.+..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 345689999999999999999997431 11111 2445666666667778899999999999532
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+...+..+|++++|+|+..+.+.....+..... ..++|+++++||+|+...
T Consensus 86 ---------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~--~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 86 ---------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQAD--KYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred ---------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECCCCCCC
Confidence 2234566678899999999999876555444433333 346899999999999864
No 229
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-12 Score=96.89 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=92.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE---EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~---~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+.+++|.-|+|||.|+..|..+++ ..+.|++... .....+.+...++++|||+| ++ .++.-..+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtriievsgqkiklqiwdtag--qe-------rfravtrs 79 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QE-------RFRAVTRS 79 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH--hhcCCcccceecceeEEEecCcEEEEEEeeccc--HH-------HHHHHHHH
Confidence 35789999999999999999999887 3555554321 11223566778999999999 33 34455667
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+++++.+.++|+|+++. ...+..|+.+.....+++.-+++++||.||..++++
T Consensus 80 yyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv 134 (215)
T KOG0097|consen 80 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV 134 (215)
T ss_pred HhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccC
Confidence 89999999999999873 355678888877777788889999999999988765
No 230
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.41 E-value=6.9e-12 Score=116.17 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=79.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc--ccc---cc----------C------CCCceEEEEEEEEecCCeeEEEEecC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK--LSI---VT----------N------KPQTTRHRILGICSGPEYQMILYDTP 171 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~--~~~---~~----------~------~~~tt~~~~~~~~~~~~~~~~liDtp 171 (254)
.+.++++++|.+++|||||+++++... ... +. + ..+.+.......+.+.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456789999999999999999986321 111 11 0 01222333344567788999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
|..+. .......+..+|++|+|+|++.+.......+..... ..++|+++++||+|+..
T Consensus 89 G~~df---------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~--~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDF---------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTR--LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhH---------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECccccC
Confidence 95321 123344578899999999999876544443334333 24689999999999963
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.40 E-value=4.4e-12 Score=103.42 Aligned_cols=117 Identities=20% Similarity=0.142 Sum_probs=70.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccC----CCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN----KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~----~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
.+++++|.+|+|||||+|.+++........ ...+|..... +.......+.+|||||+.+... ..+.+. .. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~-~~~~~l-~~--~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAF-PPDDYL-EE--M 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccC-CHHHHH-HH--h
Confidence 479999999999999999999854321111 1112221111 1111234789999999865322 112221 11 1
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+..+|++++|.+. .+...+..+...+... +.|+++|+||+|+..+
T Consensus 77 ~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 77 KFSEYDFFIIISST--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLS 122 (197)
T ss_pred CccCcCEEEEEeCC--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhh
Confidence 25678988887543 3455554444444432 5799999999999643
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=99.40 E-value=7.9e-12 Score=112.39 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=83.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc---------------cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+++++|..++|||||++++++.... ......+.|.+.....+...+..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 44568999999999999999999863110 011245667766665666677889999999952
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEE-EEEecCCCCChHh
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGE 243 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pii-vV~nK~Dl~~~~~ 243 (254)
.+.......+..+|++++|+|+..+.......+...... .++|.+ +++||+|+.+.++
T Consensus 87 ------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~ 145 (396)
T PRK00049 87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred ------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHH
Confidence 233444455789999999999988665544333333332 357875 6899999986443
No 233
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.40 E-value=4.9e-12 Score=110.09 Aligned_cols=86 Identities=26% Similarity=0.312 Sum_probs=65.1
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec------------------------CCeeEEEEecCCC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~~~liDtpG~ 173 (254)
++++|.+++|||||+|++.+... .++++|++|..+..+.... ...++++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 47899999999999999999876 4889999987766653321 2367999999998
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
...... .......+...++.+|++++|+|+.
T Consensus 80 v~ga~~--~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHE--GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCccc--hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 543211 1223355667799999999999996
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.39 E-value=6.4e-12 Score=116.36 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=78.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc--cccccC-------------------CCCceEEEEEEEEecCCeeEEEEecC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK--LSIVTN-------------------KPQTTRHRILGICSGPEYQMILYDTP 171 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~--~~~~~~-------------------~~~tt~~~~~~~~~~~~~~~~liDtp 171 (254)
.+.++++++|+.++|||||+++++... ....+. ..+.+.......+.+.+..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 356789999999999999999997321 111100 01122233334566778999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
|..+.. ......+..+|++++|+|++++.......+..... ..++|+++++||+|+...
T Consensus 88 G~~df~---------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~--~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFS---------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCR--LRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhH---------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHH--hcCCCEEEEEECCccccc
Confidence 954322 22344567899999999998865544333333332 357999999999998754
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.38 E-value=6.3e-12 Score=96.18 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=74.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.+++++|+.|+|||||++++.+.+.. +. .|..... . =.++|||| +.- .++.+...+......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~----~~-KTq~i~~-----~---~~~IDTPG--Eyi---E~~~~y~aLi~ta~d 63 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR----YK-KTQAIEY-----Y---DNTIDTPG--EYI---ENPRFYHALIVTAQD 63 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC----cC-ccceeEe-----c---ccEEECCh--hhe---eCHHHHHHHHHHHhh
Confidence 47999999999999999999986542 21 1211111 1 13599999 211 123444666677789
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC-ChHhHHHHHHH
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEV 250 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~-~~~~~~~~~~~ 250 (254)
||+|++|.|+++........+... .+.|+|-|+||+|+. +..+++...+.
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~ 114 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKW 114 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHH
Confidence 999999999998544333333221 257999999999999 45555554443
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.37 E-value=6.2e-12 Score=115.33 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccccc--------------------------------CCCCceEEEEEEEEec
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSG 160 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~--------------------------------~~~~tt~~~~~~~~~~ 160 (254)
....+++++|..++|||||+++++...-.... ...+.|.+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44568999999999999999999854311110 0113344555556667
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++.++.|+||||+.. +.......+..+|++++|+|+..+..........+..... ..|+++|+||+|+..
T Consensus 105 ~~~~i~~iDTPGh~~---------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHEQ---------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-IKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcHH---------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-CCceEEEEEeecccc
Confidence 788999999999421 2223333468999999999998865432222222222222 247899999999984
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.37 E-value=9.4e-12 Score=119.24 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc-----ccccc------------CCCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+.++|+++|..++|||||+++++... ...+. ...++|.+.....+.+.+..+.++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 345689999999999999999997321 11111 2446677766667778889999999999533
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
. .......+..+|++++|+|+..+.......+..... ..++|+++++||+|+...+
T Consensus 88 f---------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~--~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 88 F---------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQAD--KYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred H---------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHH--HcCCCEEEEEECCCCCCCC
Confidence 2 223445577899999999998876655544444443 3468999999999998643
No 238
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.37 E-value=9.7e-12 Score=116.54 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=72.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecC------------------CeeEEEEecCC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGP------------------EYQMILYDTPG 172 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~------------------~~~~~liDtpG 172 (254)
..+++.|+++|.+++|||||++++.+..+. ...+ +.|........+.. ...+.+|||||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 356788999999999999999999876542 2222 22222111111100 01278999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
... +. ......+..+|++++|+|++++...........+. ..+.|+++|+||+|+.
T Consensus 81 ~e~--f~-------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~--~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 81 HEA--FT-------NLRKRGGALADIAILVVDINEGFQPQTIEAINILK--RRKTPFVVAANKIDRI 136 (586)
T ss_pred hHH--HH-------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHH--HcCCCEEEEEECcCCc
Confidence 532 22 22234567899999999999864433322222232 2478999999999986
No 239
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=2.7e-11 Score=95.03 Aligned_cols=125 Identities=21% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccc-----c-CCC---CceEEEEEEEEecC-CeeEEEEecCCCcccchhhh
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-----T-NKP---QTTRHRILGICSGP-EYQMILYDTPGIIEKKIHML 181 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~-----~-~~~---~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~ 181 (254)
.....+|++.|+.++||||++..+.......+ + ... .||...-.+.+... +..+.++|||| +.++.-+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm 84 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM 84 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH
Confidence 34567899999999999999999998764222 1 111 24444444444443 47899999999 4443333
Q ss_pred hHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 182 ~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
|.-+.+++.++|+++|.+++.......+..++....+ +|++|.+||.||.+..-.++
T Consensus 85 -------~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~ppe~ 141 (187)
T COG2229 85 -------WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-IPVVVAINKQDLFDALPPEK 141 (187)
T ss_pred -------HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC-CCEEEEeeccccCCCCCHHH
Confidence 3445788999999999999766544444444443322 99999999999987644433
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.36 E-value=7.2e-12 Score=113.02 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=76.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccc--------------------------------cCCCCceEEEEEEEEecCCee
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPEYQ 164 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~--------------------------------~~~~~tt~~~~~~~~~~~~~~ 164 (254)
+++++|+.++|||||+++++...-... ....+.|.+.....+.+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 689999999999999999974321100 011234456666666778889
Q ss_pred EEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+.++||||+.+ +.......+..+|++++|+|+..+..........+..... ..++++|+||+|+..
T Consensus 82 ~~liDtPGh~~---------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-~~~iivviNK~D~~~ 147 (406)
T TIGR02034 82 FIVADTPGHEQ---------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-IRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEeCCCHHH---------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-CCcEEEEEEeccccc
Confidence 99999999422 2223334578999999999998866444332223333222 246899999999975
No 241
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.36 E-value=1.3e-11 Score=116.05 Aligned_cols=114 Identities=25% Similarity=0.297 Sum_probs=74.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc--------ccC------CCCceEEEEEEEE-----ecCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~--------~~~------~~~tt~~~~~~~~-----~~~~~~~~liDtpG~~~ 175 (254)
.++++++|+.++|||||+++++...... ..+ ..+.|.......+ ++....+.+|||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999998643110 111 1234433322222 23347899999999543
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
. ...+..++..+|++++|+|++++.+... ..+.... ..++|+++|+||+|+..
T Consensus 83 F---------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~---~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 F---------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL---ENDLEIIPVINKIDLPS 136 (595)
T ss_pred H---------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH---HcCCCEEEEEECcCCCc
Confidence 2 2334456788999999999988543322 1122222 24689999999999964
No 242
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.9e-12 Score=99.79 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=88.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+..+|+++|-.++||||++.++-..++- .. ..|.......+...+.++.+||..|. .+.. .-|..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v--tt--vPTiGfnVE~v~ykn~~f~vWDvGGq--~k~R-------~lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--VPTIGFNVETVEYKNISFTVWDVGGQ--EKLR-------PLWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcc--cC--CCccccceeEEEEcceEEEEEecCCC--cccc-------cchhh
Confidence 445568999999999999999998877763 22 23333445556677899999999993 3222 34667
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~~ 243 (254)
|+.+.+++|||+|+++. ..+..+.+..++.... .+.|+++.+||.|+...-.
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence 89999999999999983 3455566666655443 6799999999999975543
No 243
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.35 E-value=1.4e-11 Score=111.13 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEE--------------------EEec------CCeeE
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG--------------------ICSG------PEYQM 165 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~--------------------~~~~------~~~~~ 165 (254)
+..+++++|..++|||||++.+.+..... .....+.|...... .++. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34579999999999999999997542210 01111222111100 0011 24679
Q ss_pred EEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc--hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~--~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|||||.. .+...+...+..+|++++|+|++++. ....+.+. .+... ...|+++|+||+|+.+.+.
T Consensus 83 ~liDtPGh~---------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~-gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 83 SFVDAPGHE---------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII-GIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred EEEECCCHH---------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc-CCCeEEEEEEccccCCHHH
Confidence 999999942 23344555677899999999999753 22223332 22222 2247999999999987655
Q ss_pred HH
Q 025346 244 IA 245 (254)
Q Consensus 244 ~~ 245 (254)
..
T Consensus 152 ~~ 153 (406)
T TIGR03680 152 AL 153 (406)
T ss_pred HH
Confidence 43
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.34 E-value=9.1e-12 Score=118.31 Aligned_cols=118 Identities=24% Similarity=0.225 Sum_probs=77.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccc----------cCCC----------------------CceEEEEEEEEec
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV----------TNKP----------------------QTTRHRILGICSG 160 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~----------~~~~----------------------~tt~~~~~~~~~~ 160 (254)
....+++++|.+++|||||+++++...-... +... +.|.+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3345799999999999999999986542211 1112 3344444556667
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+.++.++||||+.+ +.......+..+|++++|+|+..+..........+.... ...|+++|+||+|+..
T Consensus 102 ~~~~~~liDtPG~~~---------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQ---------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHH---------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEeccccc
Confidence 778899999999422 112233447899999999999876543322222222222 1257899999999985
No 245
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=2e-11 Score=96.56 Aligned_cols=112 Identities=29% Similarity=0.318 Sum_probs=70.3
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE----------------------------------------
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~---------------------------------------- 157 (254)
|+++|..++|||||+|.+++.++...+..+.|.......+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 6899999999999999999987654444433321111000
Q ss_pred ---------------EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhH-HHHHHHhhc
Q 025346 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVG 221 (254)
Q Consensus 158 ---------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~-~~~~~~~~~ 221 (254)
.......+.|+||||+.+...... +.+..++..+|+++||+++....... ...+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-----EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-----HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-----HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 011224699999999865322111 34556679999999999999865533 333444343
Q ss_pred ccCCCCCEEEEEecC
Q 025346 222 DHKDKLPILLVLNKK 236 (254)
Q Consensus 222 ~~~~~~piivV~nK~ 236 (254)
. ....+++|.||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 2 234599999995
No 246
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.34 E-value=1.7e-12 Score=104.09 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=84.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEE-ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+++++|..++|||+|+..+....++ ..+.+|.-+... ..+ ++..+.+.+|||+| ++.+..++..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl------- 72 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL------- 72 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc-------
Confidence 468999999999999999999988774 444444433332 334 35667899999999 4444443321
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+..+|++++++++.+ +++++...|..-++.+.++.|+++|++|.||.+.
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhC
Confidence 3788999999999877 4566555555556667799999999999999854
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=1.5e-11 Score=118.03 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccc-----cc------cC------CCCceEEEEEEEEecCCeeEEEEecCCCccc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~------~~------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (254)
..++|+++|..++|||||+++++...-. .+ .+ ..+.|.......+.+.+..+.+|||||..+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4578999999999999999999853210 00 00 1223333334456677899999999995432
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
...+...+..+|++++|+|++++............. ..++|+++|+||+|+...
T Consensus 87 ---------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~--~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ---------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQAD--RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred ---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEECCCCCCC
Confidence 233455678999999999998865433322222222 246899999999999864
No 248
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.32 E-value=2.7e-11 Score=109.38 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=72.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc--cccCCCCceEEEEEEE--------------E------ec------CCee
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGI--------------C------SG------PEYQ 164 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~--~~~~~~~tt~~~~~~~--------------~------~~------~~~~ 164 (254)
.+..+++++|+.++|||||+..+.+.... ......+.|....... + +. ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 44568999999999999999998653111 0111223343321110 0 00 0257
Q ss_pred EEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc-hhH-HHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 165 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~-~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+.+|||||.. .+...+...+..+|++++|+|++++. ... ...+. .+... ...|+++|+||+|+.+.+
T Consensus 87 i~liDtPG~~---------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~-~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGHE---------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDII-GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc-CCCcEEEEEEeeccccch
Confidence 9999999932 22334445567789999999999753 222 22222 22211 224799999999998765
Q ss_pred hH
Q 025346 243 EI 244 (254)
Q Consensus 243 ~~ 244 (254)
+.
T Consensus 156 ~~ 157 (411)
T PRK04000 156 RA 157 (411)
T ss_pred hH
Confidence 43
No 249
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-11 Score=98.70 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=79.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
++.++++|+.++|||+|..++..+... ...|......+.+......+.++|.||. ...+.....++.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH---------~rlR~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGH---------SRLRRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCc---------HHHHHHHHHHcc
Confidence 357999999999999999999876321 2222333334444445556899999993 223344445555
Q ss_pred ---CccEEEEEEeCCCCc---hhHHHHHHHhhccc---CCCCCEEEEEecCCCCChHhH
Q 025346 195 ---NADCIVVLVDACKAP---ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 195 ---~~d~iv~vid~~~~~---~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+.+||||+|+.... ....+.+..++... ...+|+++++||.|+.....-
T Consensus 105 ~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 105 HNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred ccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence 799999999997744 34445555554433 456899999999999765433
No 250
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=5.4e-11 Score=110.28 Aligned_cols=128 Identities=17% Similarity=0.085 Sum_probs=84.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCC-CCceEEEEEEEEecCCeeEEEEecCCCcccchhh-hhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~ 190 (254)
....+|+++|.+|+||||++|.+++.+...+... +.||. .........+..+.+|||||+.+..... ........+.
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 3456899999999999999999999876555554 45554 3333334457889999999998754322 2223334444
Q ss_pred HHcc--CccEEEEEEeCCCCch--hHHHHHHHhhcccCC--CCCEEEEEecCCCCCh
Q 025346 191 SAGI--NADCIVVLVDACKAPE--RIDEILEEGVGDHKD--KLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~--~~d~iv~vid~~~~~~--~~~~~~~~~~~~~~~--~~piivV~nK~Dl~~~ 241 (254)
.++. .+|+|+||........ .....+..+...++. -..+|||.|..|...+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 4433 5899999987754222 222344444444443 3579999999999974
No 251
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=6.1e-13 Score=98.72 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=83.8
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
++|.+++|||.|+-++-...+- ..+...|. .+.... ..+...+++++|||+| +++ ++.-+.+|++.+
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~~kvklqiwdtag--qer-------frsvt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QER-------FRSVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCCcEEEEEEeeccc--hHH-------HhhhhHhhhccc
Confidence 5799999999999887766553 12222111 111111 2344567899999999 443 334466789999
Q ss_pred cEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 197 DCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 197 d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
|++++++|+.+ +++....|+.++.........+.+++||||+.+++.+
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV 121 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc
Confidence 99999999987 7889999999887776677889999999999876544
No 252
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.30 E-value=4.5e-11 Score=90.86 Aligned_cols=124 Identities=24% Similarity=0.273 Sum_probs=86.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC---CeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
+..+++++|..++|||+++..++...-.......+|..+.+...++.+ ...+.+.||.|+.+... +--.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~--------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ--------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh--------hhhH
Confidence 456899999999999999999987665445555566666666655432 34689999999865421 2234
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChHhHH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.|+.-+|+.++|++..+. +..+...-.++-+. ....+||++++||+|+.++.++.
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd 137 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVD 137 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcC
Confidence 567889999999999873 33333222222221 23568999999999998776654
No 253
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=92.11 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=87.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+..+++++|-.++|||||++.+.+.+.. ...+|........-......+.+||..| +.. + +.-|..
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~---hltpT~GFn~k~v~~~g~f~LnvwDiGG--qr~---I----RpyWsN 81 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPR---HLTPTNGFNTKKVEYDGTFHLNVWDIGG--QRG---I----RPYWSN 81 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChh---hccccCCcceEEEeecCcEEEEEEecCC--ccc---c----chhhhh
Confidence 345568999999999999999999987653 2222222222222233458999999999 322 2 234678
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChHhHHHH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
|+.+.|.+|||+|+++ .++++.+.+-+++...+ ...|+.+..||.|++.+..+++.
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eei 140 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEI 140 (185)
T ss_pred hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHH
Confidence 8999999999999876 45666666666655433 56899999999999877555543
No 254
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.29 E-value=4.7e-11 Score=112.35 Aligned_cols=116 Identities=25% Similarity=0.283 Sum_probs=74.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccc--------cc------CCCCceEEEEEEEE-----ecCCeeEEEEecCCCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGII 174 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~--------~~------~~~~tt~~~~~~~~-----~~~~~~~~liDtpG~~ 174 (254)
..++++++|+.++|||||+.+++...-.. .. ...+.|.......+ ++....+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999998632110 00 11123322222222 3346789999999964
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHH-HHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+.. ..+..++..+|++++|+|++++.+.... .+.... ..++|+++|+||+|+...
T Consensus 86 dF~---------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~---~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 86 DFS---------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHH---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCcc
Confidence 422 3344557789999999999986543322 222221 246899999999999653
No 255
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=9.3e-11 Score=98.00 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE--------------------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-------------------------------------- 154 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~-------------------------------------- 154 (254)
...+.++++|+.|+||||+++.+.+..+...... ..|+.+.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999998753211110 1110000
Q ss_pred -------------EEEEe-cCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHcc-CccEEEEEEeCCCCchhHH-H
Q 025346 155 -------------LGICS-GPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-E 214 (254)
Q Consensus 155 -------------~~~~~-~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~-~~d~iv~vid~~~~~~~~~-~ 214 (254)
.-.+. .....+.++||||+.... .........+....++. ..++|++|+|+........ .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 00001 112569999999996431 12333445456777777 4569999999877554433 1
Q ss_pred HHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 215 ILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 215 ~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+...+. ..+.|+++|+||+|..++.
T Consensus 183 ~ia~~ld--~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 183 KLAKEVD--PQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHH--HcCCcEEEEEECCCCCCcc
Confidence 2222222 3568999999999998754
No 256
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=2.4e-11 Score=110.03 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=85.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCC-ceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
.+..+|+++|..|+||||||..++..++. ...|. -....+...+..+..+..++||+.-.+.. ..+.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~--~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~---------~~l~~ 75 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR---------LCLRK 75 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcc--ccccccCCccccCCccCcCcCceEEEecccccchh---------HHHHH
Confidence 45578999999999999999999998874 22222 11222234445566779999998632221 34456
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccC---CCCCEEEEEecCCCCChHhH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~---~~~piivV~nK~Dl~~~~~~ 244 (254)
.++.||+|++|+..++ ..+.+...|..+++... .++|+|+|+||+|.......
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 6899999999998877 34555555555555555 78999999999999865443
No 257
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=3.4e-12 Score=97.53 Aligned_cols=119 Identities=19% Similarity=0.225 Sum_probs=82.0
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE----EEEEEEe---------cCCeeEEEEecCCCcccchhhhhH
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----RILGICS---------GPEYQMILYDTPGIIEKKIHMLDS 183 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~----~~~~~~~---------~~~~~~~liDtpG~~~~~~~~~~~ 183 (254)
+.+.+|.+|+||||++.++...++.. .. .+|.. .....++ ...+.+++|||+| ++++.++
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~--qF-IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSL-- 83 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT--QF-ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSL-- 83 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc--ee-EEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHH--
Confidence 46778999999999999998877631 11 11110 0011111 1125699999999 5544443
Q ss_pred HHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChHhHHHH
Q 025346 184 MMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 184 ~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+.+.++.|-+.++++|.++ ++-++..|+..+..... .+.-+++++||+||.+.+++++.
T Consensus 84 -----TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~ 145 (219)
T KOG0081|consen 84 -----TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSED 145 (219)
T ss_pred -----HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHH
Confidence 4456888999999999987 66777888877554332 45669999999999999888654
No 258
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.27 E-value=1e-10 Score=100.24 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=77.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccccc-CCC-------Cce-EEEEEEEEe--cCCeeEEEEecCCCcccch-----h
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKP-------QTT-RHRILGICS--GPEYQMILYDTPGIIEKKI-----H 179 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~-~~~-------~tt-~~~~~~~~~--~~~~~~~liDtpG~~~~~~-----~ 179 (254)
.+++++|.+|+|||||+|.|++....... ..+ .+. ......... +....++++||||+++... .
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 47999999999999999999987654332 111 111 111122222 2345799999999876431 1
Q ss_pred hhhHHHHHHHHHHc-------------cCccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 180 MLDSMMMKNVRSAG-------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 180 ~~~~~~~~~~~~~~-------------~~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.+.....+++..++ ...|+++|+++.+. +....+-.... ......++|-|+.|+|.+.++++.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk---~Ls~~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMK---RLSKRVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHH---HHTTTSEEEEEESTGGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHH---HhcccccEEeEEecccccCHHHHH
Confidence 22222222222221 25799999999864 55555543333 234568899999999999999987
Q ss_pred HHHHHH
Q 025346 246 KKLEVT 251 (254)
Q Consensus 246 ~~~~~~ 251 (254)
.....+
T Consensus 162 ~~k~~i 167 (281)
T PF00735_consen 162 AFKQRI 167 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 259
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1e-10 Score=87.64 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=85.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++.+|-.++||||++..+.-.... ... .|..-....+.+.+..+.+||..| +.. .+.-|..|+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~--~~i--pTvGFnvetVtykN~kfNvwdvGG--qd~-------iRplWrhYy~ 83 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGG--QDK-------IRPLWRHYYT 83 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc--ccc--cccceeEEEEEeeeeEEeeeeccC--chh-------hhHHHHhhcc
Confidence 457999999999999999998765432 222 222333455677889999999999 322 2245678899
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCChHhHHHH
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+..++|||+|+.++ .++.+..+..++.... .+.|++|.+||.|+.+.....+.
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei 139 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEI 139 (180)
T ss_pred CCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHH
Confidence 99999999999774 3445555555555432 56899999999999766444443
No 260
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=1.8e-10 Score=95.84 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=73.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcc-ccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
...+..++++|.+|+|||||++.+.+... .......++ + ......+.++.++||||.. ....
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l 98 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMI 98 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHH
Confidence 45567899999999999999999986521 112222221 1 1123457789999999832 1222
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCE-EEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pi-ivV~nK~Dl~~~ 241 (254)
..+..+|++++|+|++.+.......+...+.. .+.|. ++|+||+|+.++
T Consensus 99 ~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 99 DIAKVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCc
Confidence 33678999999999988665544444443332 34674 559999999854
No 261
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.25 E-value=1.3e-10 Score=105.91 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=77.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcc--c----------------------------cccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL--S----------------------------IVTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~--~----------------------------~~~~~~~tt~~~~~~~~~~~~ 162 (254)
.+..+++++|+.++|||||+.+++...- . ......+.|.+.....+.+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3456899999999999999999875210 0 011123455565556667788
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc--------hhHHHHHHHhhcccCCCCC-EEEEE
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--------ERIDEILEEGVGDHKDKLP-ILLVL 233 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~--------~~~~~~~~~~~~~~~~~~p-iivV~ 233 (254)
..+.|+||||+. .+.......+..+|++++|+|+..+. ....+.+. +.. ..++| +++++
T Consensus 85 ~~i~lIDtPGh~---------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~--~~gi~~iiv~v 152 (446)
T PTZ00141 85 YYFTIIDAPGHR---------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF--TLGVKQMIVCI 152 (446)
T ss_pred eEEEEEECCChH---------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH--HcCCCeEEEEE
Confidence 899999999943 23344555678999999999998753 12223332 222 23555 78999
Q ss_pred ecCCC
Q 025346 234 NKKDL 238 (254)
Q Consensus 234 nK~Dl 238 (254)
||+|.
T Consensus 153 NKmD~ 157 (446)
T PTZ00141 153 NKMDD 157 (446)
T ss_pred Ecccc
Confidence 99995
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=99.25 E-value=8.4e-11 Score=114.60 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCc---------------eEEEEEEEEec----------CCeeEE
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRILGICSG----------PEYQMI 166 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t---------------t~~~~~~~~~~----------~~~~~~ 166 (254)
....++|+++|+.++|||||+++++...-.......++ |.......+.+ .+..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34566899999999999999999986432111111111 11111111112 256799
Q ss_pred EEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 167 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
++||||+.+ +.......+..+|++++|+|+..+.......+..... ..++|+++++||+|+.
T Consensus 96 liDtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~--~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQAL--QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHH--HcCCCEEEEEEChhhh
Confidence 999999643 2234455678999999999999876544443333332 2468999999999997
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.24 E-value=4.3e-11 Score=115.15 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc---------------cccccCCCCceEEEE----EEEEecCCeeEEEEecCCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK---------------LSIVTNKPQTTRHRI----LGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~---------------~~~~~~~~~tt~~~~----~~~~~~~~~~~~liDtpG~ 173 (254)
...++|+++|+.++|||||+++++... +.......+.|.... ...+.+.+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345789999999999999999997531 100001112232211 1124567889999999996
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+.. ......+..+|++++|+|+..+.......+..... ..+.|+++|+||+|...
T Consensus 97 ~~f~---------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~--~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFG---------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQAL--KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccH---------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHH--HcCCCEEEEEEChhccc
Confidence 5422 22345578899999999998865433322222221 24578899999999974
No 264
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=5.5e-12 Score=98.24 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEE--EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~--~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
....+++++|..++||||++.+++..-|. .++..+. .+. -...+..++.+..+|||+| +..+. ...
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifT--kdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfD-------aIt 86 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFT--KDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFD-------AIT 86 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccc--cccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHH-------HHH
Confidence 44568999999999999999999965543 2222111 111 1112345667889999999 33322 445
Q ss_pred HHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 190 RSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+|+++|.+.++|+..++ +++....|...+... ...+|.++|-||+|+++...+
T Consensus 87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~ 142 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQM 142 (246)
T ss_pred HHHhccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhc
Confidence 678999999999999988 677777777765544 356999999999999877654
No 265
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.21 E-value=2.2e-10 Score=111.90 Aligned_cols=118 Identities=23% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC---------------CceEEEEEEEEe----------------
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILGICS---------------- 159 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~---------------~tt~~~~~~~~~---------------- 159 (254)
...+.++|+++|+.++|||||+.+++...-....... +.|.......+.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3455678999999999999999999854321111111 112111111111
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..+..++++||||+.+. .......+..+|++++|+|+..+.....+.+..... ..++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF---------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~--~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHH---------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH--HCCCCEEEEEECCccc
Confidence 13567899999995332 244455678999999999999876544433322222 3578999999999998
No 266
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.3e-10 Score=103.28 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=87.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec---CCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.++|-+.++|+-..|||||+..+-..... ....-+.|.......+.. ....++|+|||| ...|..++..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaR----- 74 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRAR----- 74 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhc-----
Confidence 46788999999999999999999888775 455556777666655554 346899999999 4444444432
Q ss_pred HHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
-..-+|++++|+++.++.......-....+ ..+.|+++.+||+|+.+.
T Consensus 75 --Ga~vtDIaILVVa~dDGv~pQTiEAI~hak--~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 75 --GASVTDIAILVVAADDGVMPQTIEAINHAK--AAGVPIVVAINKIDKPEA 122 (509)
T ss_pred --CCccccEEEEEEEccCCcchhHHHHHHHHH--HCCCCEEEEEecccCCCC
Confidence 367899999999999987665443333333 468999999999999853
No 267
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.4e-10 Score=98.60 Aligned_cols=133 Identities=19% Similarity=0.266 Sum_probs=86.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEEEEecC-----------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGP----------------------------- 161 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~~~~~~----------------------------- 161 (254)
...+.|+++|..+.||||+|+.++..+++- +++.|.|......-+.+..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 346789999999999999999999988753 3334433332222111100
Q ss_pred ----------CeeEEEEecCCCcccchhhhhHH--HHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCC
Q 025346 162 ----------EYQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKL 227 (254)
Q Consensus 162 ----------~~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~ 227 (254)
-.++.++||||+.......+... +.....-.+..+|.|++++|+..- ..+..+.+..+ + +..-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL-k--G~Ed 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL-K--GHED 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh-h--CCcc
Confidence 04699999999987664433221 223333447899999999998652 23333333332 2 4556
Q ss_pred CEEEEEecCCCCChHhHHHHH
Q 025346 228 PILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 228 piivV~nK~Dl~~~~~~~~~~ 248 (254)
.+-||+||+|.++.+++....
T Consensus 213 kiRVVLNKADqVdtqqLmRVy 233 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQLMRVY 233 (532)
T ss_pred eeEEEeccccccCHHHHHHHH
Confidence 789999999999999876543
No 268
>PTZ00258 GTP-binding protein; Provisional
Probab=99.18 E-value=1.4e-10 Score=103.15 Aligned_cols=91 Identities=24% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~ 175 (254)
....+++++|.||+|||||+|++.+.+. .++++|+||.....+.+...+ .++.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3455899999999999999999988775 589999999988888776542 3589999999875
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
.... .......+...++.+|++++|+|+.
T Consensus 98 ga~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4322 1223345667789999999999984
No 269
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.18 E-value=8.4e-11 Score=97.80 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=57.9
Q ss_pred eeEEEEecCCCcccc-hhhhhHHHHHHHHHHccCccEEEEEEeCCCC---chhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 163 ~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~---~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
..++++||||.++.- .+.......+.+. -...-+|+||+|..++ .+.+...+....-..+.+.|+++|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 569999999965421 1222222223222 2356789999998663 334444444322223467999999999999
Q ss_pred CChHhHHHHHHHHhcC
Q 025346 239 IKPGEIAKKLEVTTCF 254 (254)
Q Consensus 239 ~~~~~~~~~~~~~~~~ 254 (254)
.+.+-..++...++.|
T Consensus 194 ~d~~fa~eWm~DfE~F 209 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAF 209 (366)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9998888887777654
No 270
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.17 E-value=1.1e-10 Score=99.52 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=67.3
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCe-----------------eEEEEecCCCcccchhh
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~~~~ 180 (254)
++++|.+++|||||+|++.+.+. .++++|++|.+...+.+...+. .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 47899999999999999999887 5899999998888776655443 4899999998754322
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
.......+...++.+|++++|+|+.
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223355667788999999999873
No 271
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=2e-10 Score=101.11 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=69.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCcccch
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 178 (254)
.+++++|.|++|||||+|++.+.+ ..++++|+||..+..+.+...+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 579999999999999999999988 4689999999888877665443 2589999999875432
Q ss_pred hhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
. .......+...++.+|++++|+|+.
T Consensus 82 ~--g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 K--GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred h--HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2 2233356667789999999999984
No 272
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.16 E-value=1e-09 Score=100.06 Aligned_cols=115 Identities=22% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcc------------------------c------cccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL------------------------S------IVTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~------------------------~------~~~~~~~tt~~~~~~~~~~~~ 162 (254)
.+..+++++|+.++|||||+.+++...- + ......+.|.+.....+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3456799999999999999998874210 0 011122445555555667788
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-ch-------hHHHHHHHhhcccCCCC-CEEEEE
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PE-------RIDEILEEGVGDHKDKL-PILLVL 233 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~-------~~~~~~~~~~~~~~~~~-piivV~ 233 (254)
..+.++||||. ..+.......+..+|++++|+|+..+ ++ ...+.+. +.. ..++ ++++++
T Consensus 85 ~~i~liDtPGh---------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~-~~~--~~gi~~iIV~v 152 (447)
T PLN00043 85 YYCTVIDAPGH---------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHAL-LAF--TLGVKQMICCC 152 (447)
T ss_pred EEEEEEECCCH---------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHH-HHH--HcCCCcEEEEE
Confidence 89999999993 23334555667899999999999874 21 2223222 222 2356 578899
Q ss_pred ecCCCC
Q 025346 234 NKKDLI 239 (254)
Q Consensus 234 nK~Dl~ 239 (254)
||+|+.
T Consensus 153 NKmD~~ 158 (447)
T PLN00043 153 NKMDAT 158 (447)
T ss_pred EcccCC
Confidence 999987
No 273
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3e-10 Score=87.60 Aligned_cols=117 Identities=24% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|-.|+|||||++.+-..+...-.+..+.| .......+.+++.+|..|. ..-+..|..+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT----SE~l~Ig~m~ftt~DLGGH---------~qArr~wkdy 84 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELSIGGMTFTTFDLGGH---------LQARRVWKDY 84 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCC----hHHheecCceEEEEccccH---------HHHHHHHHHH
Confidence 45678999999999999999999888765433333322 3344566789999999994 3334778889
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|+|||++|+.+. +.+.+..+...+... -.+.|+++.+||+|...+-
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999999999999772 334444444333322 2679999999999998653
No 274
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.2e-10 Score=88.93 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=85.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccccc----CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~----~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
...++++|..++|||||+...-........ ..-.+|.....+.......++.+||..| +. .....|.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe-------~lrSlw~ 87 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QE-------SLRSLWK 87 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hH-------HHHHHHH
Confidence 346899999999999999876543211111 1223455566677777788999999999 33 2335567
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhc-ccCCCCCEEEEEecCCCCChHhHHHHHH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~-~~~~~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
.|+..+++|+|+||++++ ++.....+..... ..-.+.|+++.+||.|+.+..+..+.-.
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~ 149 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDG 149 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHH
Confidence 789999999999999883 2333333333222 2236799999999999988766555433
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.13 E-value=4.9e-10 Score=107.32 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=74.0
Q ss_pred EeCCCCChHHHHHHHhcCcccc-----------cc------CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhH
Q 025346 121 LGKPNVGKSTLANQMIGQKLSI-----------VT------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (254)
Q Consensus 121 ~G~~~~gKssl~~~~~~~~~~~-----------~~------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 183 (254)
+|+.++|||||+++++...-.+ +. ...+.|.......+.+.+..+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 5899999999999996542211 00 1133444555556677889999999999532
Q ss_pred HHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 184 ~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+...+...+..+|++++|+|++.........+..... ..++|+++|+||+|+...
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAE--KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHH--HcCCCEEEEEECCCCCCC
Confidence 1133445577899999999998865443332222222 246899999999999754
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.11 E-value=6.7e-10 Score=99.55 Aligned_cols=88 Identities=26% Similarity=0.298 Sum_probs=67.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe------------------------cCCeeEEEEecC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTP 171 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~------------------------~~~~~~~liDtp 171 (254)
.+++++|.+++|||||+|++.+.+.. ++++|++|..+..+... ....+++++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 47999999999999999999988764 68899999877776432 122568999999
Q ss_pred CCcccchhhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
|+....... ......+...++.+|++++|+|+.
T Consensus 81 Gl~~ga~~g--~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEG--RGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccch--hhHHHHHHHHHHHCCEEEEEEeCC
Confidence 986532111 123345666789999999999996
No 277
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-09 Score=97.80 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+++|.|-++|.-..|||||+..+-...++ ....-+.|...-. ..+. .+.+++|.|||| ...|..|+.
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPG--HaAF~aMRa------ 219 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLP-SGKSITFLDTPG--HAAFSAMRA------ 219 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecC-CCCEEEEecCCc--HHHHHHHHh------
Confidence 457889999999999999999999888765 3444455554332 2233 678999999999 333444433
Q ss_pred HHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+-+..+|.+|+|+.+.++.......-....+ ..+.|+++.+||||....
T Consensus 220 -RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk--~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 220 -RGANVTDIVVLVVAADDGVMPQTLEAIKHAK--SANVPIVVAINKIDKPGA 268 (683)
T ss_pred -ccCccccEEEEEEEccCCccHhHHHHHHHHH--hcCCCEEEEEeccCCCCC
Confidence 3367899999999999976554332222222 468999999999998754
No 278
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.09 E-value=5.1e-10 Score=108.00 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC---------------CceEEEEEE----EEecCCeeEEEEecCC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILG----ICSGPEYQMILYDTPG 172 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~---------------~tt~~~~~~----~~~~~~~~~~liDtpG 172 (254)
..+.++|+++|+.++|||||+.+++...-....... +.|...... .....+..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345678999999999999999999854211111111 112111111 1123467899999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
+.+. .......+..+|++++|+|+..+.......+..... ..+.|.++++||+|+.
T Consensus 97 ~~df---------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~--~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDF---------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL--RERVKPVLFINKVDRL 152 (731)
T ss_pred ccCh---------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH--HcCCCeEEEEECchhh
Confidence 6542 133445578899999999998865443333222221 2356889999999986
No 279
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.08 E-value=1.5e-09 Score=98.89 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccc--cCCCCceEEEEEE---------------------------EEe----
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILG---------------------------ICS---- 159 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~--~~~~~tt~~~~~~---------------------------~~~---- 159 (254)
....+|+++|+-..|||||+.++.+.....- ....+.|.+.-.. .+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4456899999999999999999997532110 0111111110000 000
Q ss_pred --cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chhHHHHHHHhhcccCCCCCEEEEEecC
Q 025346 160 --GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 160 --~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~~~~~~~~~~~~~~~~~piivV~nK~ 236 (254)
.....+.++||||. ..+.......+..+|++++|+|+.++ ..........+.... .-.|+++|+||+
T Consensus 112 ~~~~~~~i~~IDtPGH---------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKi 181 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGH---------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKI 181 (460)
T ss_pred cccccceEeeeeCCCH---------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecc
Confidence 00246899999993 23345555667899999999999974 333222222222222 124789999999
Q ss_pred CCCChHhHHHHHHHH
Q 025346 237 DLIKPGEIAKKLEVT 251 (254)
Q Consensus 237 Dl~~~~~~~~~~~~~ 251 (254)
|+.+.+.+.+..+.+
T Consensus 182 Dlv~~~~~~~~~~ei 196 (460)
T PTZ00327 182 DLVKEAQAQDQYEEI 196 (460)
T ss_pred cccCHHHHHHHHHHH
Confidence 999876655544444
No 280
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.07 E-value=1e-09 Score=96.99 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=76.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC----ccc-----------cccCCCC---ceEEEEE---E-----EEecCCeeEEEEe
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G-----ICSGPEYQMILYD 169 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~----~~~-----------~~~~~~~---tt~~~~~---~-----~~~~~~~~~~liD 169 (254)
.-++++|+.++|||||+|+|++. ... .+++.++ +|.++.. . ..++-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 35899999999999999999998 555 5667777 5544333 1 1123347899999
Q ss_pred cCCCcccchh-hhh--H-------H------HH----HHHHHHcc-CccEEEEEE-eCC------CCchhH-HHHHHHhh
Q 025346 170 TPGIIEKKIH-MLD--S-------M------MM----KNVRSAGI-NADCIVVLV-DAC------KAPERI-DEILEEGV 220 (254)
Q Consensus 170 tpG~~~~~~~-~~~--~-------~------~~----~~~~~~~~-~~d~iv~vi-d~~------~~~~~~-~~~~~~~~ 220 (254)
|+|+.....- .++ . + |. -.+...+. +++..++|. |.+ ...... ..++.+ +
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e-L 176 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE-L 176 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH-H
Confidence 9998643210 000 0 0 00 01333455 899999888 764 223333 333433 3
Q ss_pred cccCCCCCEEEEEecCCCC
Q 025346 221 GDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 221 ~~~~~~~piivV~nK~Dl~ 239 (254)
+ ..++|+++|+||+|-.
T Consensus 177 k--~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 177 K--ELNKPFIILLNSTHPY 193 (492)
T ss_pred H--hcCCCEEEEEECcCCC
Confidence 3 3579999999999944
No 281
>PTZ00099 rab6; Provisional
Probab=99.03 E-value=1.7e-09 Score=86.66 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=56.2
Q ss_pred EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 158 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
+++....+.||||||. ..+.. .+..+++++|++++|+|+++ +++....|+..+......+.|+++|+||
T Consensus 24 ~~~~~v~l~iwDt~G~--e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQ--ERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCCh--HHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3455678999999993 33222 23345799999999999988 4667777777776554567899999999
Q ss_pred CCCCCh
Q 025346 236 KDLIKP 241 (254)
Q Consensus 236 ~Dl~~~ 241 (254)
+|+...
T Consensus 95 ~DL~~~ 100 (176)
T PTZ00099 95 TDLGDL 100 (176)
T ss_pred cccccc
Confidence 999653
No 282
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.3e-09 Score=91.87 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=80.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc------------------------ccc------ccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK------------------------LSI------VTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~------------------------~~~------~~~~~~tt~~~~~~~~~~~~ 162 (254)
.+..+++++|+..+|||||+-+++..- ++. .....+.|.+.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 455689999999999999999997541 111 12234556666666667777
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-------chhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-------~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
..++++|+||..+ +.......+..||+.|+|+|+..+ ...+.....-+.+..+ -..+|+++||
T Consensus 85 ~~~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNK 154 (428)
T COG5256 85 YNFTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNK 154 (428)
T ss_pred ceEEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEc
Confidence 8899999999433 334445567889999999999875 2222222222222222 3578999999
Q ss_pred CCCCC
Q 025346 236 KDLIK 240 (254)
Q Consensus 236 ~Dl~~ 240 (254)
+|+.+
T Consensus 155 MD~v~ 159 (428)
T COG5256 155 MDLVS 159 (428)
T ss_pred ccccc
Confidence 99985
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.02 E-value=5.2e-10 Score=93.73 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=39.1
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHc--cCccEEEEEEeCCCCc---hhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vid~~~~~---~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
.+.++||||. -+.-..+... ..+...+ ...-++|+++|+.... ..+...+.......+.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQ--iElf~~~~~~-~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQ--IELFTHSDSG-RKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SS--HHHHHHSHHH-HHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCC--EEEEEechhH-HHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 7999999994 3333333333 2222223 3466899999987532 23333333333333457999999999999
Q ss_pred CChH
Q 025346 239 IKPG 242 (254)
Q Consensus 239 ~~~~ 242 (254)
.++.
T Consensus 169 ~~~~ 172 (238)
T PF03029_consen 169 LSKY 172 (238)
T ss_dssp S-HH
T ss_pred ccch
Confidence 9854
No 284
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=1.3e-08 Score=88.20 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=84.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccccc---CCCC----ce--EEEEEEEEecC--CeeEEEEecCCCcccc----
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT---NKPQ----TT--RHRILGICSGP--EYQMILYDTPGIIEKK---- 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~---~~~~----tt--~~~~~~~~~~~--~~~~~liDtpG~~~~~---- 177 (254)
.-...++++|++|.|||||+|.+++....... +..+ .| .......+..+ ...++++||||+++.-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 34568999999999999999999987432111 1111 11 12222233333 3578999999998643
Q ss_pred -hhhhhHHHHHHHHHHcc--------------CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 178 -IHMLDSMMMKNVRSAGI--------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 178 -~~~~~~~~~~~~~~~~~--------------~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++.+-.+...++..++. ..|+++|.+..+. +...++-....-+ ...+.+|-|+.|+|.+..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l---s~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL---SKRVNLIPVIAKADTLTD 177 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH---hcccCeeeeeeccccCCH
Confidence 22222333333333321 4789999998755 5666554433322 345778888999999999
Q ss_pred HhHHHHHHHH
Q 025346 242 GEIAKKLEVT 251 (254)
Q Consensus 242 ~~~~~~~~~~ 251 (254)
+++....+++
T Consensus 178 ~El~~~K~~I 187 (373)
T COG5019 178 DELAEFKERI 187 (373)
T ss_pred HHHHHHHHHH
Confidence 9987765554
No 285
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.4e-09 Score=96.60 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCcccc--------------ccCCCCceEEEEEEEEe---cCCeeEEEEecCCC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS---GPEYQMILYDTPGI 173 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--------------~~~~~~tt~~~~~~~~~---~~~~~~~liDtpG~ 173 (254)
+..+.+++.++.+-..|||||..+++...-.+ +....+.|......... +...-+++|||||.
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 34556789999999999999999998543211 22334445443333332 44588999999998
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh--HhHHHHH
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKL 248 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~--~~~~~~~ 248 (254)
.+...+.. +.+.-++++++|+|++.+.+.....- +...+..+..+|.|+||+|+... +++...+
T Consensus 136 vDFs~EVs---------Rslaac~G~lLvVDA~qGvqAQT~an--f~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~ 201 (650)
T KOG0462|consen 136 VDFSGEVS---------RSLAACDGALLVVDASQGVQAQTVAN--FYLAFEAGLAIIPVLNKIDLPSADPERVENQL 201 (650)
T ss_pred ccccceeh---------ehhhhcCceEEEEEcCcCchHHHHHH--HHHHHHcCCeEEEeeeccCCCCCCHHHHHHHH
Confidence 87765443 33667999999999999865543221 12222457899999999999754 4555443
No 286
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-08 Score=83.89 Aligned_cols=134 Identities=16% Similarity=0.241 Sum_probs=84.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccc-------cCCCCceEEEEEE-EEecCC--eeEEEEecCCCcccc-----hh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILG-ICSGPE--YQMILYDTPGIIEKK-----IH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~-------~~~~~tt~~~~~~-~~~~~~--~~~~liDtpG~~~~~-----~~ 179 (254)
..+|.++|.+|.||||++|.++..+.... .+.+.|+...... .+...+ .+++++||||+++.- .+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 35899999999999999999986654321 1334444433333 233333 468899999998643 33
Q ss_pred hhhHHHHHHHHHHcc--------------CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 180 MLDSMMMKNVRSAGI--------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~--------------~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+.++..+++..|++ ..++++|.+..+. +...++-.+...+ ..-..++-|+-|+|-+.-++.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrL---t~vvNvvPVIakaDtlTleEr 202 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRL---TEVVNVVPVIAKADTLTLEER 202 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHH---hhhheeeeeEeecccccHHHH
Confidence 444444455444433 4688888888764 4555443332222 223567888899999988887
Q ss_pred HHHHHHH
Q 025346 245 AKKLEVT 251 (254)
Q Consensus 245 ~~~~~~~ 251 (254)
++...++
T Consensus 203 ~~FkqrI 209 (336)
T KOG1547|consen 203 SAFKQRI 209 (336)
T ss_pred HHHHHHH
Confidence 7665554
No 287
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.1e-09 Score=99.34 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcc-----cccc------------CCCCceEEEEEEEEecCC-eeEEEEecCCC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPE-YQMILYDTPGI 173 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~-----~~~~------------~~~~tt~~~~~~~~~~~~-~~~~liDtpG~ 173 (254)
..+.+++.++|+-.+||||+..+++...- ..+. ...+.|.......+.+.+ ..+++|||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 34567899999999999999999985421 1111 112334444444556674 99999999998
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.+.. ....+.++-+|+.|.|+|+..+.+...+....... ..++|.++++||+|....+
T Consensus 87 VDFt---------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~--~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFT---------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD--KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccH---------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh--hcCCCeEEEEECccccccC
Confidence 7764 33445578899999999999977665544333222 3579999999999997653
No 288
>PRK13768 GTPase; Provisional
Probab=98.96 E-value=3.5e-09 Score=89.68 Aligned_cols=86 Identities=27% Similarity=0.336 Sum_probs=49.8
Q ss_pred eeEEEEecCCCcccc-hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH---HHHHHhhcccCCCCCEEEEEecCCC
Q 025346 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 163 ~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~---~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
..+.+|||||..+.. .......+.+..... .++++++|+|++......+ ..+.........+.|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 369999999954322 111222222222111 1899999999976443322 2221111112357999999999999
Q ss_pred CChHhHHHHHHH
Q 025346 239 IKPGEIAKKLEV 250 (254)
Q Consensus 239 ~~~~~~~~~~~~ 250 (254)
.+..+..+..+.
T Consensus 175 ~~~~~~~~~~~~ 186 (253)
T PRK13768 175 LSEEELERILKW 186 (253)
T ss_pred cCchhHHHHHHH
Confidence 988766554443
No 289
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.1e-08 Score=87.49 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=83.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccc------cCCCCceE--EEEEEEEecC--CeeEEEEecCCCcccc-----hh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTTR--HRILGICSGP--EYQMILYDTPGIIEKK-----IH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~------~~~~~tt~--~~~~~~~~~~--~~~~~liDtpG~~~~~-----~~ 179 (254)
...++++|++|.|||||+|.++...+... ...+..|. ......+..+ ..+++++||||+++.- +.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36899999999999999999988754311 11111121 1222223333 3578999999987633 22
Q ss_pred hhhHHHHHHHHHHc-----------c--CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 180 MLDSMMMKNVRSAG-----------I--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 180 ~~~~~~~~~~~~~~-----------~--~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.+-.....++..|+ . ..|+++|.+..+. +...++-.+..-+ ....++|-|+.|+|.+.++++.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l---~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL---SKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH---hccccccceeeccccCCHHHHH
Confidence 22222223333222 1 5889999998765 5666665444333 3457888888999999999887
Q ss_pred HHHHHH
Q 025346 246 KKLEVT 251 (254)
Q Consensus 246 ~~~~~~ 251 (254)
....++
T Consensus 178 ~~K~~I 183 (366)
T KOG2655|consen 178 QFKKRI 183 (366)
T ss_pred HHHHHH
Confidence 665544
No 290
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.92 E-value=3.1e-09 Score=90.49 Aligned_cols=129 Identities=22% Similarity=0.186 Sum_probs=90.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe-cCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.....+.|.++|.+++|||||++.+.+.... ..+..+.|.+....... ..+..+.+.||-|+.+.-+..+-..| +++
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF-~AT 251 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAF-QAT 251 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHH-HHH
Confidence 3455678999999999999999999955443 45555666655543333 34667889999999887766666666 666
Q ss_pred HHHccCccEEEEEEeCCCCc-hhHHHHHHHhhcccC-C----CCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHK-D----KLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~-~~~~~~~~~~~~~~~-~----~~piivV~nK~Dl~~~ 241 (254)
.+....+|+++.|+|++++. +.........++... + ...++-|-||+|..+.
T Consensus 252 LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 252 LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 77788999999999999964 333333333333322 1 2347889999998653
No 291
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.6e-09 Score=82.33 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecC-CeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
....+++++|..|.|||+++++.+..++. ..++.|+.-..... .++. ..++..|||.|. +.+..+..
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe--~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq--Ek~gglrd------ 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFE--KTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ--EKKGGLRD------ 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccce--ecccCcceeEEeeeeeecccCcEEEEeeecccc--eeeccccc------
Confidence 34678999999999999999999999885 44444443322221 1233 489999999994 32222211
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++-...+.++++|.+.. ......|..++.+. ..++||++++||.|.....
T Consensus 78 -gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv-~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 78 -GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV-RENIPIVLCGNKVDIKARK 130 (216)
T ss_pred -ccEEecceeEEEeeeeehhhhhcchHHHHHHHHH-hcCCCeeeeccceeccccc
Confidence 235566777888998764 35566777665554 4569999999999997765
No 292
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.91 E-value=3.4e-09 Score=93.45 Aligned_cols=114 Identities=19% Similarity=0.161 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc-----cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
...|+|+|.+|+|||||||.+.|-. .+.++ ...||....... ...-..+.+||.||++...+.. +.++ +.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~-~~Yl-~~- 109 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPP-EEYL-KE- 109 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--H-HHHH-HH-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCH-HHHH-HH-
Confidence 4589999999999999999997632 11111 122333332222 2222359999999987654322 2222 11
Q ss_pred HHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
..+...|.+|++.+ ++ +...+.++...++ ..+.|+++|-||+|.
T Consensus 110 -~~~~~yD~fiii~s-~r-f~~ndv~La~~i~--~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 -VKFYRYDFFIIISS-ER-FTENDVQLAKEIQ--RMGKKFYFVRTKVDS 153 (376)
T ss_dssp -TTGGG-SEEEEEES-SS---HHHHHHHHHHH--HTT-EEEEEE--HHH
T ss_pred -ccccccCEEEEEeC-CC-CchhhHHHHHHHH--HcCCcEEEEEecccc
Confidence 12567787655443 33 4455555444444 247899999999996
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.7e-08 Score=86.94 Aligned_cols=119 Identities=22% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccc--------------------------------ccCCCCceEEEEEEEEecC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------------------------------VTNKPQTTRHRILGICSGP 161 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~--------------------------------~~~~~~tt~~~~~~~~~~~ 161 (254)
...+.+.+|.-.-||||||-+++...-.. .....+.|.+....++..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999998652110 1223355677777777888
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+++.+.||||. ..+.+....-...||+.|+++|+..+..+......-+....+ -..+++.+||+||++-
T Consensus 85 KRkFIiADTPGH---------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy 154 (431)
T COG2895 85 KRKFIIADTPGH---------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDY 154 (431)
T ss_pred cceEEEecCCcH---------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC-CcEEEEEEeeeccccc
Confidence 899999999994 334455555577899999999998876555544444443332 2568999999999864
Q ss_pred H
Q 025346 242 G 242 (254)
Q Consensus 242 ~ 242 (254)
+
T Consensus 155 ~ 155 (431)
T COG2895 155 S 155 (431)
T ss_pred C
Confidence 3
No 294
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=4.2e-09 Score=82.68 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
..+++++|.+|+|||||+|++.+.+...+++.+++|+....... +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 45788999999999999999999888778999999987544332 234889999994
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.88 E-value=1.2e-08 Score=90.69 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=79.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc---------------ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
.++|+++.+-..|||||+..++.+.-.. .....+.|.-....-+.+.+.++.++||||..+...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG- 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc-
Confidence 4579999999999999999999764211 011123333333344578889999999999766542
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
...+.+.-.|++++++|+.++.......... +.+..+.+-|+|+||+|..+.
T Consensus 84 --------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlk--KAl~~gL~PIVVvNKiDrp~A 135 (603)
T COG1217 84 --------EVERVLSMVDGVLLLVDASEGPMPQTRFVLK--KALALGLKPIVVINKIDRPDA 135 (603)
T ss_pred --------hhhhhhhhcceEEEEEEcccCCCCchhhhHH--HHHHcCCCcEEEEeCCCCCCC
Confidence 2233467799999999999976554443221 122346677899999999765
No 296
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=5.7e-09 Score=83.22 Aligned_cols=58 Identities=34% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
....+++++|.+|+|||||+|++.+.+...+++.|++|+....... +..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3446899999999999999999999888779999999987655444 246899999994
No 297
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.5e-08 Score=88.10 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=86.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC--cccc-------------------ccCCCCceEEEEEEEEecCCeeEEEEecC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ--KLSI-------------------VTNKPQTTRHRILGICSGPEYQMILYDTP 171 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~--~~~~-------------------~~~~~~tt~~~~~~~~~~~~~~~~liDtp 171 (254)
.+.+..+|+..|.+|||||...++-- .+.. .....+.+.....-.+++.+..++++|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 34567899999999999999987622 1100 01111222233334567889999999999
Q ss_pred CCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
|..+.+ +.+.+.+..+|..|.|+|+..+.+.....+.+..+ .+++||+-.+||.|....+
T Consensus 90 GHeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcr--lR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCR--LRDIPIFTFINKLDREGRD 149 (528)
T ss_pred Cccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHh--hcCCceEEEeeccccccCC
Confidence 977665 33445567799999999999998887777777766 4689999999999997543
No 298
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.83 E-value=1.3e-08 Score=75.15 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.+++++|..|+|||||.+.+.+.... +.- |.. ..+.. =-.+||||-.-. ++.+...+......
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l----ykK-TQA---ve~~d----~~~IDTPGEy~~-----~~~~Y~aL~tt~~d 64 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL----YKK-TQA---VEFND----KGDIDTPGEYFE-----HPRWYHALITTLQD 64 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh----hcc-cce---eeccC----ccccCCchhhhh-----hhHHHHHHHHHhhc
Confidence 47999999999999999999987642 111 110 01111 125899993211 23333556667889
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
+|++++|-.+.+........+..+ ...|+|-|++|+|+.+..+++...
T Consensus 65 advi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~ 112 (148)
T COG4917 65 ADVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVK 112 (148)
T ss_pred cceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHH
Confidence 999999999988655544443332 235699999999999877666543
No 299
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.82 E-value=3.6e-08 Score=82.49 Aligned_cols=124 Identities=24% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEEEEecCCeeEEEEecCCC-----cccchhhhhHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGI-----IEKKIHMLDSM 184 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~-----~~~~~~~~~~~ 184 (254)
..+.+.+++.|.+++|||||+|.+++.+... ....++-|+..... .-+.++.++|.||+ .......+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence 4556799999999999999999999876422 12244555443322 33668999999994 33333333332
Q ss_pred HHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 185 ~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
...+...-...-.+++++|++-+....+.....++. ..+.|+.+|.||||....
T Consensus 210 -t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g--e~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 -TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG--ENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred -HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh--hcCCCeEEeeehhhhhhh
Confidence 233333344566678889998877666655555554 358999999999998643
No 300
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=1.3e-08 Score=78.52 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=45.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~ 174 (254)
+++++|.+|+||||++|++.+.....++..+++|+......++. .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 89999999999999999999988766788888887755444422 68999999974
No 301
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.9e-08 Score=92.64 Aligned_cols=128 Identities=22% Similarity=0.365 Sum_probs=84.5
Q ss_pred hhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCcccccc-------CCCCc---------eEEEE--EEE---E
Q 025346 100 YEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQT---------TRHRI--LGI---C 158 (254)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~-------~~~~t---------t~~~~--~~~---~ 158 (254)
+.+..+............++++|+-.+|||+|+..+....-+... .++.+ +.... .-. .
T Consensus 113 y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~ 192 (971)
T KOG0468|consen 113 YDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS 192 (971)
T ss_pred hhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC
Confidence 444555555666777889999999999999999999876432110 11111 11111 111 1
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchh-HHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~-~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
.+..+-++++||||..+.. ....+.++.+|++++|+|+.++..- ..+.+...++ .+.|+++|+||+|
T Consensus 193 ~~KS~l~nilDTPGHVnF~---------DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiD 260 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFS---------DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVD 260 (971)
T ss_pred cCceeeeeeecCCCcccch---------HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhH
Confidence 2334568999999965443 5555668899999999999986543 3344444443 4689999999999
Q ss_pred CC
Q 025346 238 LI 239 (254)
Q Consensus 238 l~ 239 (254)
++
T Consensus 261 RL 262 (971)
T KOG0468|consen 261 RL 262 (971)
T ss_pred HH
Confidence 84
No 302
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=2.1e-08 Score=81.69 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=88.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+||||+-..+...-.+.-...++.|.+....++..-| .-+.+||..|. . .-++.++..+-...+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq--e--~fmen~~~~q~d~iF 79 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ--E--EFMENYLSSQEDNIF 79 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc--H--HHHHHHHhhcchhhh
Confidence 468999999999999998877766555556667777777776665443 67999999993 2 123333333333457
Q ss_pred cCccEEEEEEeCCCCc-----hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 194 INADCIVVLVDACKAP-----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~-----~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
...+++++|+|++... ......++.+++ ..+...+.+.++|.|++..+..+...
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~-~SP~AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ-NSPEAKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHh-cCCcceEEEEEeechhcccchHHHHH
Confidence 8899999999997631 222233333333 34667899999999998876655443
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=1.9e-08 Score=83.01 Aligned_cols=91 Identities=31% Similarity=0.361 Sum_probs=73.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
-+++++|.|++|||||+..+...+.. ...+.+||..++.+...+.+..++++|.||+.+...+.... . ++..+.++.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR-G-RQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR-G-RQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC-C-ceEEEEeec
Confidence 48999999999999999999877654 67888999999999999999999999999987654322111 1 333455778
Q ss_pred ccEEEEEEeCCCCc
Q 025346 196 ADCIVVLVDACKAP 209 (254)
Q Consensus 196 ~d~iv~vid~~~~~ 209 (254)
||+|+.|.|++.+.
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 99999999998853
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.4e-08 Score=87.09 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=69.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC------------------CeeEEEEecCCCccc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEK 176 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~~~liDtpG~~~~ 176 (254)
..++.++|.|++|||||.|.++... ....+||++|.++..+..... ...+.++|.+|+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4579999999999999999999988 558999999988877765321 135889999998654
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
..+. ..+-.++...++.+|+|+.|+|+.
T Consensus 81 As~G--eGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKG--EGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccC--CCcchHHHHhhhhcCeEEEEEEec
Confidence 3221 122356677789999999999986
No 305
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.74 E-value=1.2e-07 Score=78.87 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=65.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC--ccccccCCCCceEEEEEEEEec---CCeeEEEEecCCCcccchhh-hhHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHM-LDSMMMK 187 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~--~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~-~~~~~~~ 187 (254)
+...|+++|++++|||+|+|.+++. .+........+|+......... .+..+.++||||+.+..... ......-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3457999999999999999999999 7776666678888766655544 36789999999987654333 1111111
Q ss_pred HHHHHccCccEEEEEEeCCCC
Q 025346 188 NVRSAGINADCIVVLVDACKA 208 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~ 208 (254)
.+ ..-.++++||.++....
T Consensus 86 ~l--~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 AL--ATLLSSVLIYNSWETIL 104 (224)
T ss_pred HH--HHHHhCEEEEeccCccc
Confidence 11 12258899998888653
No 306
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.73 E-value=3.2e-08 Score=77.47 Aligned_cols=58 Identities=40% Similarity=0.473 Sum_probs=48.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
....+++++|.+|+||||++|.+.+.....++..+++|+........ ..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 34678999999999999999999998766678889999887665442 46899999995
No 307
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=2.9e-08 Score=86.87 Aligned_cols=63 Identities=41% Similarity=0.571 Sum_probs=53.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.....+++++|.+++||||+||++.++....+++.|++|........+. .+.++||||+.-..
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~ 191 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPK 191 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCC
Confidence 3455789999999999999999999999988999999998876655543 38999999987654
No 308
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.71 E-value=2.5e-08 Score=80.68 Aligned_cols=57 Identities=42% Similarity=0.482 Sum_probs=45.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcc--------ccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~--------~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
....++++|.+|+|||||+|.+.+... ..++..|+||+......... .+.++||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 346899999999999999999997542 24677889998877665533 5799999995
No 309
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=6.6e-08 Score=82.95 Aligned_cols=63 Identities=37% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (254)
....+++++|.+|+|||||+|++.+.+...+++.|++|+....... +..+.++||||+.....
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCC
Confidence 3457899999999999999999999887778999999987654433 23589999999865543
No 310
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.9e-08 Score=90.88 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=81.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe------------------cCCeeEEEEecCC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPG 172 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~------------------~~~~~~~liDtpG 172 (254)
.+.+.+.++++|+..+|||-|+..+-+..+. .+...+.|...-..++. ..-..+.+|||||
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVq-egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQ-EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccc-cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 4667889999999999999999999887654 34444555432222221 1123488999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
...|..++. .....||.+|+|+|+.++.+...-.-..+++ .++.|+||.+||+|.+
T Consensus 550 --hEsFtnlRs-------rgsslC~~aIlvvdImhGlepqtiESi~lLR--~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 550 --HESFTNLRS-------RGSSLCDLAILVVDIMHGLEPQTIESINLLR--MRKTPFIVALNKIDRL 605 (1064)
T ss_pred --chhhhhhhh-------ccccccceEEEEeehhccCCcchhHHHHHHH--hcCCCeEEeehhhhhh
Confidence 444444433 3367899999999999987654433333333 4679999999999986
No 311
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.69 E-value=6.6e-08 Score=76.97 Aligned_cols=58 Identities=43% Similarity=0.526 Sum_probs=47.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
....+++++|.+|+|||||+|++.+..+..++..+++|........+ ..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34568999999999999999999998876677888888776654443 56899999996
No 312
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=1.1e-07 Score=84.95 Aligned_cols=126 Identities=23% Similarity=0.289 Sum_probs=82.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc--------------ccCCCCceEEEEEEEE-----ecCCeeEEEEecCCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGIC-----SGPEYQMILYDTPGI 173 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--------------~~~~~~tt~~~~~~~~-----~~~~~~~~liDtpG~ 173 (254)
.+.++..++.+-..|||||..+++...-.. .....+.|.-.....+ ++..+.+.++||||.
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 344567888889999999999998542211 1223344433222222 335678999999998
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh--HhHHHHHH
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLE 249 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~--~~~~~~~~ 249 (254)
.+..++..+. +..|.+.++|+|++.+.+... +.........+.-++-|+||+||... +.+....+
T Consensus 87 VDFsYEVSRS---------LAACEGalLvVDAsQGveAQT--lAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe 153 (603)
T COG0481 87 VDFSYEVSRS---------LAACEGALLVVDASQGVEAQT--LANVYLALENNLEIIPVLNKIDLPAADPERVKQEIE 153 (603)
T ss_pred cceEEEehhh---------HhhCCCcEEEEECccchHHHH--HHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHH
Confidence 8887665433 567889999999999765422 22222223457889999999999754 44444443
No 313
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=1e-07 Score=82.25 Aligned_cols=62 Identities=35% Similarity=0.501 Sum_probs=51.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
....+++++|.+|+||||++|++.+.+...+++.|++|+....... +..+.++||||+....
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCC
Confidence 3456899999999999999999999988778999999988654333 2358899999987654
No 314
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.68 E-value=7.8e-08 Score=73.56 Aligned_cols=119 Identities=20% Similarity=0.252 Sum_probs=78.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCcccccc-CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+....++.++|.+..|||||+..+.+....... ...+...........+....+.+||..| +.++.. .+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG--~~~~~n-------~l 86 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG--QREFIN-------ML 86 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC--cHhhhc-------cC
Confidence 4455679999999999999999999988763211 1112111111223345567899999999 332222 12
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
--....+-+|+|++|.++. ...+..|+.+.......-+| ++|++|.|+.
T Consensus 87 Piac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 87 PIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred ceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhh
Confidence 2235678899999999873 45677887776655445567 5689999984
No 315
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.67 E-value=3.4e-08 Score=87.83 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=75.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc-----cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHH-
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN- 188 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~- 188 (254)
...++++|.+|+|||||+|.+++.. ...++..|+||........ +..+.++||||+.... .+.......
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~--~~~~~l~~~~ 228 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH--QMAHYLDKKD 228 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh--HhhhhcCHHH
Confidence 3689999999999999999999753 2457889999988765544 2236799999986542 222211111
Q ss_pred HHH--HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 189 VRS--AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 189 ~~~--~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
... --.....+++.++.......-.-...+.+. ..+..+.+.++|.+..+.-..++..
T Consensus 229 l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~--~~~~~~~~~~~~~~~~h~t~~~~a~ 288 (360)
T TIGR03597 229 LKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLK--GEKTSFTFYVSNELNIHRTKLENAD 288 (360)
T ss_pred HhhcCCCCccCceEEEeCCCCEEEEceEEEEEEec--CCceEEEEEccCCceeEeechhhhH
Confidence 111 123567778888876532110000001111 2345677788887777664444333
No 316
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9.7e-08 Score=72.16 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+++++|--|+|||++.-++--.+. +...|+... ....+...+.++++||..| +.+ ++ --|..|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev--vttkPtigf--nve~v~yKNLk~~vwdLgg--qtS---ir----PyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV--VTTKPTIGF--NVETVPYKNLKFQVWDLGG--QTS---IR----PYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc--cccCCCCCc--CccccccccccceeeEccC--ccc---cc----HHHHHHh
Confidence 556899999999999999887765554 233333222 2334556788999999999 332 22 3356779
Q ss_pred cCccEEEEEEeCCCCc--hhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhH
Q 025346 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~--~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+.|.+|||+|.++.. ......+...+++. -.+..+++++||.|.......
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~ 137 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR 137 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH
Confidence 9999999999998732 12222233333322 245778999999998655433
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.9e-07 Score=79.73 Aligned_cols=125 Identities=18% Similarity=0.080 Sum_probs=94.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccc--cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.++..|.--.|||||+..+.+.... ......++|.+....+.+.++..+.|+|.||+.+. .......+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~---------i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF---------ISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH---------HHHHHhhhc
Confidence 3677888889999999999886532 23455688888888888877889999999995332 344555678
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
..|+.++|+++.++..........++..++ ....++|+||+|+.++..++...+++
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdllg-i~~giivltk~D~~d~~r~e~~i~~I 128 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLLG-IKNGIIVLTKADRVDEARIEQKIKQI 128 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhcC-CCceEEEEeccccccHHHHHHHHHHH
Confidence 899999999998877766665555565542 24569999999999987776665554
No 318
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.5e-07 Score=77.20 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=83.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC----------cccccc-----CCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ----------KLSIVT-----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~----------~~~~~~-----~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+..+|..+|.-..|||||...+... .+.... ...+.|.......+......+-.+|+||..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa--- 86 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH---
Confidence 44568999999999999998877532 111111 223455555555667778889999999943
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC-CEEEEEecCCCCChHhHHHH
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~-piivV~nK~Dl~~~~~~~~~ 247 (254)
-+......-....|+.|+|+.+.++..........+.++ -+. .+++++||+|+++.+++.+.
T Consensus 87 ------DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 87 ------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred ------HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHH
Confidence 233444455678899999999999765544433333332 245 47888999999987665443
No 319
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.63 E-value=1e-07 Score=84.18 Aligned_cols=89 Identities=21% Similarity=0.155 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCcccch
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 178 (254)
.+++++|.|++|||||+|.+.+.....+.++|++|..+..+.+...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 57999999999999999999998874588999999887777665433 3589999999876432
Q ss_pred hhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
... .....+...++.+|++++|+++.
T Consensus 83 ~g~--Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGE--GLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ccc--CcchHHHHHHHhCCEEEEEEeCC
Confidence 221 12245667789999999999984
No 320
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.61 E-value=3e-07 Score=90.83 Aligned_cols=103 Identities=22% Similarity=0.201 Sum_probs=65.7
Q ss_pred CChHHHHHHHhcCccccccCCCCceEEEEEEEEecC------------------CeeEEEEecCCCcccchhhhhHHHHH
Q 025346 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (254)
Q Consensus 126 ~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (254)
++||||+.++.+...+ ....-+.|...-...+..+ ...+.||||||. ..+..+
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh--e~F~~l------ 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH--EAFTSL------ 542 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--HHHHHH------
Confidence 3599999999988764 3334455554333322221 113899999994 222222
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
....+..+|++++|+|++++...........+.. .++|+++|+||+|+..
T Consensus 543 -r~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 -RKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred -HHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCcc
Confidence 2234678999999999988654443333333332 3689999999999974
No 321
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.5e-07 Score=83.44 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------------------------cccc------ccCCCCceEEEEEEEEecCCe
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------------------------KLSI------VTNKPQTTRHRILGICSGPEY 163 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------------------------~~~~------~~~~~~tt~~~~~~~~~~~~~ 163 (254)
....++++|...+|||||+-+++.. .+++ .....+.|.+.....++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4568999999999999999988743 0111 122345566666667777788
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-----ch--hHHHHHHHhhcccCCCCCEEEEEecC
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-----PE--RIDEILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-----~~--~~~~~~~~~~~~~~~~~piivV~nK~ 236 (254)
.++++|+||+.+.. .........||+.++|+|++.+ ++ ........+++.++ -..++|++||+
T Consensus 256 ~~tliDaPGhkdFi---------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFI---------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccccc---------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecc
Confidence 99999999965543 2233446789999999999752 21 12222333444443 35789999999
Q ss_pred CCCC--hHhHHHHHH
Q 025346 237 DLIK--PGEIAKKLE 249 (254)
Q Consensus 237 Dl~~--~~~~~~~~~ 249 (254)
|+++ ++...+...
T Consensus 326 D~V~Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKN 340 (603)
T ss_pred cccCccHHHHHHHHH
Confidence 9975 333444433
No 322
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.59 E-value=3.6e-07 Score=79.94 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=51.1
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC------------chhHHHHHHHhhcc-cCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD-HKD 225 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~------------~~~~~~~~~~~~~~-~~~ 225 (254)
...+..+.+||++|... .+..|..++.++++|+||+|.++. ..+....+..++.. ...
T Consensus 157 ~~~~~~~~~~DvgGq~~---------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 157 TIKNLKFRMFDVGGQRS---------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred EecceEEEEECCCCCcc---------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 34567899999999432 236677889999999999999863 12222334444432 226
Q ss_pred CCCEEEEEecCCCCC
Q 025346 226 KLPILLVLNKKDLIK 240 (254)
Q Consensus 226 ~~piivV~nK~Dl~~ 240 (254)
+.|+++++||.|+..
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 799999999999864
No 323
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.57 E-value=3.8e-07 Score=79.81 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+..+.|+||+|..+.... ....+|.+++|.+...+. .+......++ ...-++|+||+|+..
T Consensus 147 ~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd-~iq~~k~gi~-----E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGD-ELQGIKKGIM-----ELADLIVINKADGDN 208 (332)
T ss_pred cCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchH-HHHHHHhhhh-----hhhheEEeehhcccc
Confidence 3578999999998754311 245699999997643322 2211111111 122389999999987
Q ss_pred hHh
Q 025346 241 PGE 243 (254)
Q Consensus 241 ~~~ 243 (254)
...
T Consensus 209 ~~~ 211 (332)
T PRK09435 209 KTA 211 (332)
T ss_pred hhH
Confidence 543
No 324
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.4e-07 Score=76.50 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=82.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccccc-----------CCCCce-----------EEEEEEEEecC------CeeE
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-----------NKPQTT-----------RHRILGICSGP------EYQM 165 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~-----------~~~~tt-----------~~~~~~~~~~~------~~~~ 165 (254)
...+|..+|.-..|||||...+.+-....-+ .|..+. .......+... -+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4568999999999999999999865211000 000000 00001111111 2568
Q ss_pred EEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc-hhHH-HHH--HHhhcccCCCCCEEEEEecCCCCCh
Q 025346 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERID-EIL--EEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~-~~~~-~~~--~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.|+|.|| +..+|....+-..--|+.++|+.++.+. +... +.+ .+++. -..+++|-||+|+++.
T Consensus 89 SfVDaPG---------He~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~ 155 (415)
T COG5257 89 SFVDAPG---------HETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSR 155 (415)
T ss_pred EEeeCCc---------hHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecH
Confidence 8999999 4455666666677789999999998742 2222 222 22222 2578999999999999
Q ss_pred HhHHHHHHHHhcC
Q 025346 242 GEIAKKLEVTTCF 254 (254)
Q Consensus 242 ~~~~~~~~~~~~~ 254 (254)
++..+..+++++|
T Consensus 156 E~AlE~y~qIk~F 168 (415)
T COG5257 156 ERALENYEQIKEF 168 (415)
T ss_pred HHHHHHHHHHHHH
Confidence 9988888888776
No 325
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.52 E-value=8.5e-07 Score=78.30 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=51.3
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC------------chhHHHHHHHhhcc-cCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD-HKD 225 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~------------~~~~~~~~~~~~~~-~~~ 225 (254)
...+..+.+||.+|... .+..|..++.++++|+||+|+++. ..+....+..++.. ...
T Consensus 180 ~~~~~~~~~~DvgGqr~---------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 180 IVKKLFFRMFDVGGQRS---------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred EECCeEEEEEecCCchh---------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 34567789999999322 235677789999999999999863 12233344444432 236
Q ss_pred CCCEEEEEecCCCCC
Q 025346 226 KLPILLVLNKKDLIK 240 (254)
Q Consensus 226 ~~piivV~nK~Dl~~ 240 (254)
+.|+++++||.|+..
T Consensus 251 ~~piil~~NK~D~~~ 265 (342)
T smart00275 251 NTSIILFLNKIDLFE 265 (342)
T ss_pred CCcEEEEEecHHhHH
Confidence 799999999999864
No 326
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.5e-06 Score=74.85 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=74.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc-ccCC-----CCceEEEEEEEE---------ecCCeeEEEEecCCCcccchh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNK-----PQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~-----~~tt~~~~~~~~---------~~~~~~~~liDtpG~~~~~~~ 179 (254)
..++.++|.-.+|||||..++..-.... .... .+.|.+.-...+ ..+..++.++|+||.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------ 80 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------ 80 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc------
Confidence 4689999999999999999987532111 1111 222322221111 234567899999993
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
....+.+.....-.|..++|+|+..+.+........+-+.. -...++|+||+|.+.+.+.
T Consensus 81 ---asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 81 ---ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--CKKLVVVINKIDVLPENQR 140 (522)
T ss_pred ---HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--ccceEEEEeccccccchhh
Confidence 23334455556778999999999887655444333322222 2456889999999877543
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.9e-07 Score=82.57 Aligned_cols=60 Identities=33% Similarity=0.352 Sum_probs=44.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCC-------ceEEEEEEEEecCCeeEEEEecCCCcccch
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~-------tt~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (254)
..++++|++|+|||||+|.+++.....++..++ ||+......+..++ .++||||+.....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence 358999999999999999999876555555555 77766444343322 7999999876554
No 328
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.49 E-value=4.7e-07 Score=70.81 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=43.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
...+++++|.+++||||++|++.+.....+.+.+++|........ +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 456789999999999999999998776556677777755332222 236999999994
No 329
>PRK12288 GTPase RsgA; Reviewed
Probab=98.49 E-value=4e-07 Score=80.42 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=42.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCC-------CceEEEEEEEEecCCeeEEEEecCCCcccch
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (254)
.++++|.+|+|||||+|++++.....++..+ +||.......+..++ .++||||+.....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccC
Confidence 5899999999999999999987654444443 366655544443332 5999999866544
No 330
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.46 E-value=3.2e-06 Score=73.39 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=41.1
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+..+.|+||+|...... .....+|.++++.+... ..++......+ .++|.++|+||+|+..
T Consensus 125 ~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~-~~el~~~~~~l-----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGT-GDDLQGIKAGL-----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCc-cHHHHHHHHHH-----hhhccEEEEEcccccc
Confidence 357899999999754321 12456788887754432 23333322222 2577899999999987
Q ss_pred hHh
Q 025346 241 PGE 243 (254)
Q Consensus 241 ~~~ 243 (254)
...
T Consensus 187 ~~~ 189 (300)
T TIGR00750 187 ATN 189 (300)
T ss_pred hhH
Confidence 653
No 331
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.45 E-value=4.9e-07 Score=91.51 Aligned_cols=123 Identities=24% Similarity=0.271 Sum_probs=76.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccC---C----CCceEEEEEEEEe-cCCeeEEEEecCCCccc--c----
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN---K----PQTTRHRILGICS-GPEYQMILYDTPGIIEK--K---- 177 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~---~----~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~--~---- 177 (254)
...-|..+++|++|+||||+++.- +.+++.... . .+.|+ .|+ +-.....++||+|..-. .
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-----~c~wwf~~~avliDtaG~y~~~~~~~~~ 181 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-----NCDWWFTDEAVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-----ccceEecCCEEEEcCCCccccCCCcccc
Confidence 345678999999999999999986 444432110 0 11111 111 12345779999994321 1
Q ss_pred hhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCc-----------hhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 178 IHMLDSMMMKNVRSA--GINADCIVVLVDACKAP-----------ERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~-----------~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.......+...+..+ ..-.++||+++|+.+-. ..++..+.++....+...||+||+||||++.
T Consensus 182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 111122232333333 24689999999986521 2344556667777778899999999999973
No 332
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=2.5e-07 Score=72.46 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=36.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccc---c----CCCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~---~----~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
..++++|++|+|||||+|.+.+.....+ + ...+||.......++ ....++||||+.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCccccc
Confidence 5799999999999999999998742222 1 223455544443442 23589999997655443
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.43 E-value=5.4e-07 Score=75.93 Aligned_cols=61 Identities=28% Similarity=0.259 Sum_probs=42.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccC-------CCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
...++++|.+|+|||||+|.+++.....++. ..+||+......+ .. -.++||||+......
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEFGLW 187 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCccccCCC
Confidence 3579999999999999999999865433322 2347766555444 22 279999998765443
No 334
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.43 E-value=7.3e-07 Score=76.66 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-----------------CeeEEEEecCCCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-----------------EYQMILYDTPGII 174 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~~~liDtpG~~ 174 (254)
.....++.++|.+++||||+.|.+...... ..++|++|.++....+.-. ...+++.|++|+.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 345679999999999999999999998887 8999999988776654211 2458999999986
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCC
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~ 206 (254)
..... ...+-..+...++.+|+++.|+++.
T Consensus 96 kGAs~--G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASA--GEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCccc--CcCchHHHHHhhhhccceeEEEEec
Confidence 54322 1223356677789999999999874
No 335
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=4.9e-07 Score=80.56 Aligned_cols=58 Identities=41% Similarity=0.497 Sum_probs=45.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc-----cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
...+.++|.+|+|||||+|+++... ...++..|+||.......++.. ..++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 4579999999999999999998542 3336889999998776554332 47999999863
No 336
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=3.6e-06 Score=66.16 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=40.4
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH--HHHHHhhcccCCCCCEEEEEecCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~--~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
.....++||||+.+.. ..++..............+.+++++|+.+...... ..+...+. .-=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~-~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-----~ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPG-PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-----FADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHH-HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-----HCCEEEEecccC
Confidence 3567899999986542 22222222223334567899999999976433221 11222121 112679999996
No 337
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.5e-07 Score=79.80 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccc-----------------cccCCCCceEEEEEEEEecCCeeEEEEecCCC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLS-----------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----------------~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~ 173 (254)
+..+.++|.++..-.+||||...+++.-.-. ......+.|.......++|.+.++.++||||.
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 3445678999999999999999988743211 11223344555666678999999999999997
Q ss_pred cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+...+. .+.++-.|+++.|+|++.+.+... +..+.+..+.++|-+..+||+|....
T Consensus 113 vdf~lev---------erclrvldgavav~dasagve~qt--ltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 113 VDFRLEV---------ERCLRVLDGAVAVFDASAGVEAQT--LTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEEEEH---------HHHHHHhcCeEEEEeccCCcccce--eeeehhccccCCchhhhhhhhhhhhh
Confidence 7765332 345677899999999998765432 22222333568999999999999754
No 338
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=1.9e-08 Score=79.19 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=77.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCc-eEEEEEEEEecC---CeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t-t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
-.+++++|..|+|||+++.+.+...+. ..+..| ..+.....+.++ -+++++||..| +..+..+ ..
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs--~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------tr 93 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFS--YHYRATIGVDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TR 93 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHH--HHHHHHHhHHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EE
Confidence 357999999999999999998866543 111111 111111222333 35789999999 4333333 22
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhccc----CCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~----~~~~piivV~nK~Dl~~~~~ 243 (254)
-+++.+++.++|||.+++ ++....|..++-... +...|+++..||||..+...
T Consensus 94 Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~ 152 (229)
T KOG4423|consen 94 VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK 152 (229)
T ss_pred EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh
Confidence 357899999999999885 456667776654432 24478999999999976543
No 339
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.33 E-value=3.5e-06 Score=76.61 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=77.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccc-cccC--------------------------------------------
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTN-------------------------------------------- 145 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~-~~~~-------------------------------------------- 145 (254)
....-++|+++|..++||||.+..+....+. +.+.
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 4455689999999999999999988754321 1000
Q ss_pred --------CCCceE--EEEEEEEecCC-eeEEEEecCCCcccchhhhh----HHHHHHHHHHccCccEEEEEEeCCCCch
Q 025346 146 --------KPQTTR--HRILGICSGPE-YQMILYDTPGIIEKKIHMLD----SMMMKNVRSAGINADCIVVLVDACKAPE 210 (254)
Q Consensus 146 --------~~~tt~--~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~----~~~~~~~~~~~~~~d~iv~vid~~~~~~ 210 (254)
..+.|. ..+.-.+.+++ .+..++|.||+...--..+. ........+++.++++||+|+-...- +
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-D 462 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-D 462 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc-c
Confidence 000011 11112223333 36889999998754322221 12235567889999999999865442 1
Q ss_pred hHHHHHHHhh-cccCCCCCEEEEEecCCCCCh
Q 025346 211 RIDEILEEGV-GDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 211 ~~~~~~~~~~-~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+.....+. +.-+.+...|+|++|+|+...
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 1122222222 223467889999999998643
No 340
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=74.12 Aligned_cols=63 Identities=29% Similarity=0.341 Sum_probs=43.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc---cc----CCCCceEEEEEEEEecCCeeEEEEecCCCcccch
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~---~~----~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~ 178 (254)
..+...+++|.+|+|||||+|++....-.. ++ ...+||+......+..++ .++||||+.+...
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 345578999999999999999999743221 22 234667666665554333 6899999866554
No 341
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.29 E-value=1.3e-06 Score=78.68 Aligned_cols=63 Identities=32% Similarity=0.433 Sum_probs=53.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 180 (254)
...|.+||.||+||||+||.+.|.+.-.++..|+-|+.-.+..++. .++++|+||+..+++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence 4689999999999999999999999777999999999877776643 48999999997766543
No 342
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=3e-06 Score=69.76 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=77.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
.++++++|...+||||+.+....+-.+...-....|......++.+.-..+.+||.||..+.--...+. ....+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~------e~iF~ 100 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDY------EMIFR 100 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCH------HHHHh
Confidence 467999999999999998876654322111122222222233334455679999999975543222222 12367
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhh---cccCCCCCEEEEEecCCCCChH
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~---~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++.+++||+|+.+...+....+.... -..++++.+-+.+.|+|-+..+
T Consensus 101 ~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 101 GVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred ccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 89999999999875443333222222 2345788999999999998764
No 343
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.9e-06 Score=75.40 Aligned_cols=120 Identities=25% Similarity=0.339 Sum_probs=73.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE----------------------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH---------------------------------------- 152 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~---------------------------------------- 152 (254)
....+|++.|.+++||||++|+++.+++-+ +...++|..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 345689999999999999999999887542 222233210
Q ss_pred ----EEEEEEecCC------eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcc
Q 025346 153 ----RILGICSGPE------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (254)
Q Consensus 153 ----~~~~~~~~~~------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~ 222 (254)
.....+...+ ..+.++|.||+.-.. ....-.-+....+|++|||+++.+..+.....+......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCch------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 0000111111 258899999975432 111223344678999999999988655444433332222
Q ss_pred cCCCCCEEEEEecCCCCCh
Q 025346 223 HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 223 ~~~~~piivV~nK~Dl~~~ 241 (254)
.+..|.|+.||.|....
T Consensus 260 --~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 --EKPNIFILNNKWDASAS 276 (749)
T ss_pred --cCCcEEEEechhhhhcc
Confidence 24567888899899754
No 344
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.28 E-value=2.2e-06 Score=71.74 Aligned_cols=113 Identities=19% Similarity=0.332 Sum_probs=64.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc------CccccccCCC--CceE-----------------EEEEEE-----------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKP--QTTR-----------------HRILGI----------- 157 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~------~~~~~~~~~~--~tt~-----------------~~~~~~----------- 157 (254)
+...|.+.|+||+|||||++.+.. .+++...-.| +.|. ..+...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 467899999999999999998863 2222211111 1110 111111
Q ss_pred ---------EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCC
Q 025346 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK 226 (254)
Q Consensus 158 ---------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~ 226 (254)
++..++.+.|+.|.|.++... ....-+|.+++|+-... ..+-++.-+.++-.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~------------~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD----- 170 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV------------DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD----- 170 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH------------HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH------------HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-----
Confidence 123458899999999877642 22567999999987754 44555555555433
Q ss_pred CCEEEEEecCCCCChHhHHH
Q 025346 227 LPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 227 ~piivV~nK~Dl~~~~~~~~ 246 (254)
++|+||+|+...+....
T Consensus 171 ---i~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 171 ---IFVVNKADRPGADRTVR 187 (266)
T ss_dssp ---EEEEE--SHHHHHHHHH
T ss_pred ---EEEEeCCChHHHHHHHH
Confidence 88999999665544433
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.26 E-value=3.1e-06 Score=73.45 Aligned_cols=60 Identities=30% Similarity=0.277 Sum_probs=40.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-------CceEEEEEEEEecCCeeEEEEecCCCccc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (254)
....++++|.+|+|||||+|.+++.....++..+ +||+.......... ..++||||+...
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 3567999999999999999999987543333332 35554443333322 378999998743
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=4.7e-06 Score=76.65 Aligned_cols=203 Identities=16% Similarity=0.202 Sum_probs=105.2
Q ss_pred cccCCcchhhhccccccCCceeeeeecccccccccchHHHHHHHHhhhcccccCCCCCCCCc-----------cChHhhh
Q 025346 16 PHYSTLTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEF-----------DDASSFL 84 (254)
Q Consensus 16 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~ 84 (254)
|-..+-..+..|..++...+.++..+.....| +....+..+..+.++....+++++-.... .....+.
T Consensus 254 ~~~~~~~~l~~m~~El~~lR~lle~q~~~l~~-~~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~ 332 (559)
T PRK12727 254 PAPQNDEELKQLRGELALMRQMIEREMNRLTD-ERLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLML 332 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHH
Confidence 33444455688889999999999888887766 33334455555555555555544210000 0011111
Q ss_pred hhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC--------ccccccCCCCce------
Q 025346 85 SLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQTT------ 150 (254)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~--------~~~~~~~~~~tt------ 150 (254)
... .+.+... .......+..++++|++|+||||++..+... ++..+...+...
T Consensus 333 ~~L---~~~l~v~----------~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL 399 (559)
T PRK12727 333 GLL---SKRLPVA----------PVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL 399 (559)
T ss_pred HHH---HHhcCcC----------ccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH
Confidence 111 1111100 0112345678999999999999999887642 121111111000
Q ss_pred ------EE-EEEEEE----------ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH
Q 025346 151 ------RH-RILGIC----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID 213 (254)
Q Consensus 151 ------~~-~~~~~~----------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~ 213 (254)
.. ...... ...+..+.||||||........+... ..+.... ....++|++.+.....+.
T Consensus 400 k~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~s~~D~~l~eeL--~~L~aa~--~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 400 HSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQL--NWLRAAR--QVTSLLVLPANAHFSDLD 475 (559)
T ss_pred HHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCCcchhhHHHHHHH--HHHHHhh--cCCcEEEEECCCChhHHH
Confidence 00 000000 11346799999999754322211111 1122211 235678888877655655
Q ss_pred HHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 214 EILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 214 ~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+..+.. ..+.-+|+||.|...
T Consensus 476 eii~~f~~----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 476 EVVRRFAH----AKPQGVVLTKLDETG 498 (559)
T ss_pred HHHHHHHh----hCCeEEEEecCcCcc
Confidence 55444322 246779999999854
No 347
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=9.4e-06 Score=74.14 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHH
Q 025346 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (254)
Q Consensus 109 ~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (254)
+...+++..++++|++|+||||||..+...-... .....+. ...+.+...+++++.+|. +- .
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~--Dl----------~ 125 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPS--DL----------H 125 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChH--HH----------H
Confidence 3455667788899999999999999887542111 1111111 113456678899999985 21 2
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+......-+|+|++++|..-+++-..-.+..++...+ -..++-|++..|+....
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HG-mPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHG-MPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcC-CCceEEEEeecccccCh
Confidence 3334567899999999998876543333334444322 23478899999997653
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.23 E-value=1.8e-05 Score=71.48 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=66.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCc-----------eE--EEEEEEEe----------------
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TR--HRILGICS---------------- 159 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~t-----------t~--~~~~~~~~---------------- 159 (254)
+..++++|.+|+||||++..+. +.++..+...+.. .. ........
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999886 3333323222211 00 01111111
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
..+..+.|+||||....... .+..+... ...++.+++|+|+..+...... ...+.+ .-.+.-+|+||.|
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-----lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~-a~~F~~---~~~~~g~IlTKlD 250 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-----LFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ-AKAFKD---SVDVGSVIITKLD 250 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-----HHHHHHHHhhhcCCcEEEEEeccccChhHHHH-HHHHHh---ccCCcEEEEECcc
Confidence 12568999999995443222 22222222 3467889999999765333222 122211 1235678899999
Q ss_pred CCCh
Q 025346 238 LIKP 241 (254)
Q Consensus 238 l~~~ 241 (254)
....
T Consensus 251 ~~ar 254 (429)
T TIGR01425 251 GHAK 254 (429)
T ss_pred CCCC
Confidence 8543
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.22 E-value=3.9e-06 Score=64.58 Aligned_cols=64 Identities=23% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
.....+..+|++++|+|+.++.......+...+.....+.|+++|+||+|+.+++++......+
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~ 67 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYF 67 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHH
Confidence 3455688999999999998865443333333333223578999999999998776665544443
No 350
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=8.1e-06 Score=76.68 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCc---------------eEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t---------------t~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
+....++++++.+-..|||||+..++....-+.+...+. |........-..+..+++||+||..+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 344567899999999999999999986543222222222 11111111223577899999999777
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
.. ....+....+|+.+.++|+-.+.......+.+ +....+...++|+||+|.
T Consensus 85 f~---------sevssas~l~d~alvlvdvvegv~~qt~~vlr--q~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FS---------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLR--QAWIEGLKPILVINKIDR 136 (887)
T ss_pred hh---------hhhhhhhhhcCCcEEEEeeccccchhHHHHHH--HHHHccCceEEEEehhhh
Confidence 64 33445567899999999998865433222211 111235778999999993
No 351
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.18 E-value=8.1e-06 Score=70.45 Aligned_cols=58 Identities=34% Similarity=0.390 Sum_probs=39.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccC-------CCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
...++++|++|+|||||+|.+++.....++. ..+||........... ..++||||+..
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 3689999999999999999999865432222 2245555444333322 26899999854
No 352
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.1e-05 Score=67.72 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=79.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc---ccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccc-----hhhhhHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKK-----IHMLDSM 184 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~---~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~-----~~~~~~~ 184 (254)
..+|+.+|.+|.|||||+..++..++.. ....|..........+. +-..++.++||.|+++.- +..+-.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4689999999999999999999887641 11122222222222222 224578999999998643 2222222
Q ss_pred HHHHHHH-------------Hcc--CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 185 MMKNVRS-------------AGI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 185 ~~~~~~~-------------~~~--~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
...++.+ .++ ..++++|.|..+. +...++..... ....+..||-|+-|.|.....++....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk---~LdskVNIIPvIAKaDtisK~eL~~FK 198 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMK---KLDSKVNIIPVIAKADTISKEELKRFK 198 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHH---HHhhhhhhHHHHHHhhhhhHHHHHHHH
Confidence 2122211 222 4677788777654 55555554433 234567778888999999988876543
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.16 E-value=4.8e-06 Score=65.22 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
..+..+|++++|+|++++.......+...+.....+.|+++|+||+|+.+++++......+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~ 64 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKIL 64 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHH
Confidence 3468899999999998864443344444443334458999999999998877665555544
No 354
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.11 E-value=1.2e-05 Score=59.60 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|..|+|||+|+.++....+. ..+...|.. +..+| ....+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~--~~~~~~t~~------------~~~~~--------------------~~~~~s~ 47 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFD--YVPTVFTIG------------IDVYD--------------------PTSYESF 47 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcc--ccCceehhh------------hhhcc--------------------ccccCCC
Confidence 7899999999999999999665543 111101111 11111 1125667
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+.++.|++..........|...+......+.|.++++||+|+..
T Consensus 48 ~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 48 DVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred CEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHh
Confidence 88888787765322111144444433345688999999999844
No 355
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.09 E-value=8.4e-06 Score=69.54 Aligned_cols=73 Identities=33% Similarity=0.373 Sum_probs=55.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC-----ccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 183 (254)
.......+.++|.||+|||||+|.+... +.+.++..|+.|+.......-.....+.++||||+..++....+.
T Consensus 139 t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 139 TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 3455678999999999999999977543 456688899999876654444556679999999998776544443
No 356
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=8.6e-06 Score=74.87 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=82.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc-----cccc------------cCCCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-----LSIV------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~------------~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+.++|.+..+-.+||||+-++++... +..+ ....+.|.......+.|...++.+|||||..+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 355678899999999999999887432 1111 11223344444456678889999999999877
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.-++.. ..++-.|+.|+|+|+..+.+........... .-+.|.+..+||+|.+...-
T Consensus 117 FT~EVe---------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~--ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 117 FTFEVE---------RALRVLDGAVLVLDAVAGVESQTETVWRQMK--RYNVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEEeh---------hhhhhccCeEEEEEcccceehhhHHHHHHHH--hcCCCeEEEEehhhhcCCCh
Confidence 654443 2356789999999998876554433322222 45799999999999987644
No 357
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.06 E-value=3.7e-05 Score=67.40 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=53.1
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCch------------hHHHHHHHhhcc
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE------------RIDEILEEGVGD 222 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~------------~~~~~~~~~~~~ 222 (254)
...+...+.++.++|.+|.. ..+..|.....++++|+||+..++..+ +....+..+...
T Consensus 187 e~~F~~k~~~f~~~DvGGQR---------seRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQR---------SERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred EEEEEeCCCceEEEeCCCcH---------HHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 33455667889999999932 233667778999999999999986211 111223333322
Q ss_pred -cCCCCCEEEEEecCCCCCh
Q 025346 223 -HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 223 -~~~~~piivV~nK~Dl~~~ 241 (254)
...+.++|+.+||.||..+
T Consensus 258 ~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred cccccCcEEEEeecHHHHHH
Confidence 2367899999999999754
No 358
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=3.3e-05 Score=68.68 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc--------cccCCCC----------------ceEEEEEEE-------EecC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS--------IVTNKPQ----------------TTRHRILGI-------CSGP 161 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~--------~~~~~~~----------------tt~~~~~~~-------~~~~ 161 (254)
..+..++++|++|+||||++..+...-.. .+..... ......... ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 45678999999999999999988753211 0110000 000000000 0124
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCchhHHHHHHHhhcccC--C-C--CCEEEEEe
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHK--D-K--LPILLVLN 234 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~--~-~--~piivV~n 234 (254)
+..+.+|||+|...... ...+..... ...+.-.++|++++.....+.+.+........ . . ..--+|+|
T Consensus 215 ~~DlVLIDTaG~~~~d~-----~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDR-----TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCCEEEEcCCCCCcccH-----HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEe
Confidence 56899999999654321 111222221 23455678999998877666655444332210 0 0 12357789
Q ss_pred cCCCCC
Q 025346 235 KKDLIK 240 (254)
Q Consensus 235 K~Dl~~ 240 (254)
|.|...
T Consensus 290 KlDEt~ 295 (374)
T PRK14722 290 KLDEAS 295 (374)
T ss_pred ccccCC
Confidence 999854
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=9.1e-05 Score=64.79 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc-----------eE-E-EEEEEE----------------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-----------TR-H-RILGIC---------------- 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t-----------t~-~-~~~~~~---------------- 158 (254)
++..++++|++|+||||++..+.+. ++......+.. .+ . ......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999988642 11111111100 00 0 000000
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH-----ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEE
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~ 233 (254)
...+..+.++||||........++.. ..+... ...++.+++|+|++.+...+.+. ....+. -.+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL--~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEEL--KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHH--HHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHHhh---CCCCEEEE
Confidence 02346799999999755433322221 122221 23578899999999765554433 222211 13457899
Q ss_pred ecCCCCC
Q 025346 234 NKKDLIK 240 (254)
Q Consensus 234 nK~Dl~~ 240 (254)
||.|...
T Consensus 267 TKlD~t~ 273 (318)
T PRK10416 267 TKLDGTA 273 (318)
T ss_pred ECCCCCC
Confidence 9999654
No 360
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.04 E-value=5.1e-05 Score=64.65 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=68.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC------ccccc--cCCCCceEEEEEE-----------------E--------
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIV--TNKPQTTRHRILG-----------------I-------- 157 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~--~~~~~tt~~~~~~-----------------~-------- 157 (254)
...+...|.+.|.||+|||||+..|... +++.. .+..+-|...+.+ .
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3455668999999999999999988632 22221 1211222111110 0
Q ss_pred ------------EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhccc
Q 025346 158 ------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDH 223 (254)
Q Consensus 158 ------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~ 223 (254)
++..++.+.|+.|.|.++.... ....+|.+++|.-..-+ .+-++.-+.++-
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--- 191 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDDLQGIKAGIMEIA--- 191 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcHHHHHHhhhhhhh---
Confidence 1224578999999998776421 24568888888766543 333444444433
Q ss_pred CCCCCEEEEEecCCCCChHh
Q 025346 224 KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 224 ~~~~piivV~nK~Dl~~~~~ 243 (254)
=++|+||.|....+.
T Consensus 192 -----Di~vINKaD~~~A~~ 206 (323)
T COG1703 192 -----DIIVINKADRKGAEK 206 (323)
T ss_pred -----heeeEeccChhhHHH
Confidence 289999999665543
No 361
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.04 E-value=2.3e-05 Score=50.07 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHHccCccEEEEEEeCCCC----chhHHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 186 MKNVRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~----~~~~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
+....+..+.+++|+|++|.+.. .+.....+.++.. ...+.|+++|+||+|
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~-~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKP-LFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH-HTTTS-EEEEE--TT
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHH-HcCCCCEEEEEeccC
Confidence 45666778889999999999872 2344444444443 345899999999998
No 362
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=4.4e-05 Score=65.93 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC----------cccccc-----CCCCceEEEEEEEEecCCeeEEEEecCCCccc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ----------KLSIVT-----NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~----------~~~~~~-----~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (254)
..+..+|.-+|.-..|||||.-.+..- ++..+. ...+.|.......+....+.+-=+|+||..+
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD- 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD- 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH-
Confidence 344568999999999999998766521 122122 2234555544444555667788899999432
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+......-...-|+.|+|+.++++.....+....+.++.+- ..+++.+||.|+++..++-+
T Consensus 130 --------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV-~~ivvfiNKvD~V~d~e~le 190 (449)
T KOG0460|consen 130 --------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGV-KHIVVFINKVDLVDDPEMLE 190 (449)
T ss_pred --------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCC-ceEEEEEecccccCCHHHHH
Confidence 33444445677899999999999766555544444444432 46889999999996555433
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.04 E-value=3.7e-05 Score=62.59 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=64.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCc------cccccCCCCce-------------EEEEEEEE----------------ec
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTT-------------RHRILGIC----------------SG 160 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~------~~~~~~~~~tt-------------~~~~~~~~----------------~~ 160 (254)
..++++|++|+||||.+-++...- +..++...... .-...... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 468999999999999998876431 11111110000 00101000 11
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++..+.++||||......+.+... ..+.... ..+-+++|++++...+...... ...+.. + +--+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el--~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~-~~~~~~--~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEEL--KKLLEAL-NPDEVHLVLSATMGQEDLEQAL-AFYEAF--G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHH--HHHHHHH-SSSEEEEEEEGGGGGHHHHHHH-HHHHHS--S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHH--HHHhhhc-CCccceEEEecccChHHHHHHH-HHhhcc--c-CceEEEEeecCCC
Confidence 346799999999654432222221 2333333 6788999999988666555333 222222 1 2356789999864
Q ss_pred h
Q 025346 241 P 241 (254)
Q Consensus 241 ~ 241 (254)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 364
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.03 E-value=3.9e-06 Score=67.23 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=68.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhc-----CccccccCCCCce----------EEEEEEEE--------------------ec
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTT----------RHRILGIC--------------------SG 160 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~-----~~~~~~~~~~~tt----------~~~~~~~~--------------------~~ 160 (254)
|.+++.|..|+|||||++.++. .+.....+..+.. ........ ..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 3578999999999999999993 2222222221110 00011110 11
Q ss_pred C--CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecC
Q 025346 161 P--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 161 ~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~ 236 (254)
. .....++.+.|..+.. .+ .+........-..+.+|.|+|+.+. .......+...+.. -=++|+||+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~ 151 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKI 151 (178)
T ss_dssp CHGC-SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-G
T ss_pred cCCCcCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEecc
Confidence 2 3578899999965543 22 1112222234567899999999762 12223333333331 117899999
Q ss_pred CCCChHh-HHHHHHHHh
Q 025346 237 DLIKPGE-IAKKLEVTT 252 (254)
Q Consensus 237 Dl~~~~~-~~~~~~~~~ 252 (254)
|+.++++ ++...+.++
T Consensus 152 D~~~~~~~i~~~~~~ir 168 (178)
T PF02492_consen 152 DLVSDEQKIERVREMIR 168 (178)
T ss_dssp GGHHHH--HHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHH
Confidence 9998873 355444443
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.03 E-value=7.7e-06 Score=68.09 Aligned_cols=91 Identities=29% Similarity=0.329 Sum_probs=71.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.++.++|.|++||||++..+.+...+ +..+-++|-..+.+.....+.++++.|.||+.+......... .+..+.++.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg--~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG--KQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCc--cEEEEEeec
Confidence 38999999999999999999876544 778889999899999989999999999999986543322110 233345678
Q ss_pred ccEEEEEEeCCCCc
Q 025346 196 ADCIVVLVDACKAP 209 (254)
Q Consensus 196 ~d~iv~vid~~~~~ 209 (254)
+++|++|.|+-.+.
T Consensus 137 cnli~~vld~~kp~ 150 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPL 150 (358)
T ss_pred ccEEEEEeeccCcc
Confidence 99999999997643
No 366
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.02 E-value=5.9e-05 Score=61.88 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
....+.++++|+.|+|||||+++++..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998754
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.01 E-value=0.00012 Score=62.63 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc------CccccccCCCCc--------------eEEEEEEE---------------E
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------------TRHRILGI---------------C 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~------~~~~~~~~~~~t--------------t~~~~~~~---------------~ 158 (254)
++..++++|++|+||||++..+.. .+...+...+.. ........ .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 456889999999999999887753 122111111100 00000000 0
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc-----cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEE
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~ 233 (254)
...+..+.++||||........+.. ...+.... ..+|.+++|+|++.+....... ....+.. .+.-+|+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~e--l~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~---~~~g~Il 224 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDE--LKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV---GLTGIIL 224 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHH--HHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC---CCCEEEE
Confidence 0245689999999965532222111 12222222 2489999999998654444332 3322222 2457899
Q ss_pred ecCCCCCh
Q 025346 234 NKKDLIKP 241 (254)
Q Consensus 234 nK~Dl~~~ 241 (254)
||+|....
T Consensus 225 TKlDe~~~ 232 (272)
T TIGR00064 225 TKLDGTAK 232 (272)
T ss_pred EccCCCCC
Confidence 99998654
No 368
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.98 E-value=1.1e-05 Score=70.61 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=84.8
Q ss_pred ccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCcccccc--------C-----CCCceEEEEEEEE---------------
Q 025346 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------N-----KPQTTRHRILGIC--------------- 158 (254)
Q Consensus 107 ~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~--------~-----~~~tt~~~~~~~~--------------- 158 (254)
+.....+....+...|.-..|||||+-.+...+..-.. . ..+.+.+.....+
T Consensus 109 r~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 109 RKTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred ecccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 33444566778999999999999999988765432100 0 0011111111111
Q ss_pred --------ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH-ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCE
Q 025346 159 --------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (254)
Q Consensus 159 --------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pi 229 (254)
...+.-+.|+||.|.+ .+++..+.-. ....|..++++-+.++.+.+......+.. ....|+
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHE--------pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~--a~~lPv 258 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHE--------PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIAL--AMELPV 258 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCcc--------HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhh--hhcCCE
Confidence 1122457899999942 2222222222 45789999999999987776655544433 357999
Q ss_pred EEEEecCCCCChHhHHHHHHHH
Q 025346 230 LLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 230 ivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
++|+||||+.+.+......+.+
T Consensus 259 iVvvTK~D~~~ddr~~~v~~ei 280 (527)
T COG5258 259 IVVVTKIDMVPDDRFQGVVEEI 280 (527)
T ss_pred EEEEEecccCcHHHHHHHHHHH
Confidence 9999999999988776655544
No 369
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=6.6e-05 Score=65.59 Aligned_cols=131 Identities=22% Similarity=0.340 Sum_probs=74.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcc-----------ccccCCC-----Cce---EEEEEE--EEe---------------
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKL-----------SIVTNKP-----QTT---RHRILG--ICS--------------- 159 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~-----------~~~~~~~-----~tt---~~~~~~--~~~--------------- 159 (254)
+..++-|.-|+||||++|.++...- ..++-.. .+. .....+ +|+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 3567889999999999999986532 1111110 000 010111 111
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH---HHHHHhhcccCCCCCEEEEEecC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~---~~~~~~~~~~~~~~piivV~nK~ 236 (254)
.+.....+|.|.|+.++. ..+............-..|.+|-|+|+.+...... +.....+. .-=+||+||+
T Consensus 82 ~~~~D~ivIEtTGlA~P~-pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~ 155 (323)
T COG0523 82 RDRPDRLVIETTGLADPA-PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKT 155 (323)
T ss_pred cCCCCEEEEeCCCCCCCH-HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecc
Confidence 223568899999986652 22222221111112345688999999988544332 33333222 1228899999
Q ss_pred CCCChHhHHHHHHHHh
Q 025346 237 DLIKPGEIAKKLEVTT 252 (254)
Q Consensus 237 Dl~~~~~~~~~~~~~~ 252 (254)
|+.++++++.....+.
T Consensus 156 Dlv~~~~l~~l~~~l~ 171 (323)
T COG0523 156 DLVDAEELEALEARLR 171 (323)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999987666555443
No 370
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=5.1e-05 Score=67.60 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc---e----------EEEEEEEEe-------------cC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT---T----------RHRILGICS-------------GP 161 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t---t----------~~~~~~~~~-------------~~ 161 (254)
.+..++++|++|+||||++..+... ++..+...+.. . ........+ ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999988632 11111111110 0 000000000 11
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+..+.|+||||........+... ..+.. ....+.+++|+|++............+.. -..--+++||.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL--~~~lk-~~~PdevlLVLsATtk~~d~~~i~~~F~~----~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIEIITNFKD----IHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHH--HHHHh-hcCCCeEEEEECCccChHHHHHHHHHhcC----CCCCEEEEEcccCCC
Confidence 35799999999654333333222 11111 23467889999987655554444443322 123467889999754
No 371
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=70.78 Aligned_cols=65 Identities=29% Similarity=0.420 Sum_probs=51.2
Q ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 110 ~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.++.+...|.++|.+++||||+||.+-.++++.+.+.|+.|.......+ -.++.+||+||+.-..
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence 3566677899999999999999999999999999999998864222111 2468899999976543
No 372
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=0.00019 Score=57.00 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=41.2
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+.++||||........+... ..+.. ....+.+++|+|+....+.. +......+.. + ..-+|+||+|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l--~~l~~-~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~--~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEEL--KKIKR-VVKPDEVLLVVDAMTGQDAV-NQAKAFNEAL--G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHH--HHHHh-hcCCCeEEEEEECCCChHHH-HHHHHHHhhC--C-CCEEEEECCcCCCC
Confidence 45689999999543211111111 11111 23589999999996543333 3333333322 2 35678899998654
No 373
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00013 Score=65.90 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc--------cccCCCCce------------EE-EEEEE----------EecC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS--------IVTNKPQTT------------RH-RILGI----------CSGP 161 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~--------~~~~~~~tt------------~~-~~~~~----------~~~~ 161 (254)
..+..++++|++|+||||++..+.+.... .+....... .. ..... ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 45678999999999999999988753210 000000000 00 00000 0123
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
+..+.++||+|....... .++.+... .....-.++|++++.....+.+...... .--.--+++||.|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~-----~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~----~~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQM-----LAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ----GHGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHH-----HHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc----CCCCCEEEEEeeeCC
Confidence 467899999996543221 12222222 2335568899999876666665554432 112345778999975
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
.
T Consensus 340 ~ 340 (420)
T PRK14721 340 A 340 (420)
T ss_pred C
Confidence 4
No 374
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=8.3e-05 Score=66.86 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc-------cccccCCCCce-----------E-E-EEEEE---------EecCCeeE
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK-------LSIVTNKPQTT-----------R-H-RILGI---------CSGPEYQM 165 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~-------~~~~~~~~~tt-----------~-~-~~~~~---------~~~~~~~~ 165 (254)
+..++++|++|+||||++..+.... ...+...+..+ . . ..... ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999887421 11111111000 0 0 00000 01135678
Q ss_pred EEEecCCCcccchhhhhHHHHHHHHHHcc--CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 166 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++||||........+... ..+..... ...-+++|+|++............. +.. -+--+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL--~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~---~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESL---NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHH--HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCC---CCCEEEEEcccCCC
Confidence 9999999754433333222 12222221 2446889999988766665555443 211 23467789999754
No 375
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=5.9e-05 Score=75.33 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=73.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccC--CCCceEEEEEEEEe-cCCeeEEEEecCCCcccc--hhhhhHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICS-GPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~--~~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~~--~~~~~~~~~~ 187 (254)
..-+..+++|++|+||||++.. .+.+++.... ..+..... +.+|+ +-+....+|||.|-.-.. ....+.....
T Consensus 123 yeLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHH
Confidence 3456789999999999999875 3333332111 11111110 22333 335568899999943221 1112222112
Q ss_pred H----HHHH--ccCccEEEEEEeCCCC----c-------hhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 188 N----VRSA--GINADCIVVLVDACKA----P-------ERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 188 ~----~~~~--~~~~d~iv~vid~~~~----~-------~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
. +..+ .+..++||+.+++.+. . ..++..+.++........|+++++||.|+++
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 1 1222 4568999999998651 1 1233445666666677899999999999987
No 376
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=0.0001 Score=64.44 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+.+..++.|.-|+|||||+|+++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3467889999999999999999854
No 377
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=9e-05 Score=65.77 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCce------------EE-EEEEEEe-------------c
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT------------RH-RILGICS-------------G 160 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~tt------------~~-~~~~~~~-------------~ 160 (254)
.++..++++|++|+||||++..+... +...+...+... .. ......+ .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 34668999999999999999988642 121111111110 00 0110001 1
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHc--cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
.+..+.++||||........+ ..+.... ...+.+++|++++.........+.. +..-.+--+|+||.|.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l-----~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~----f~~l~i~glI~TKLDE 354 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESV-----SEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK----LAEIPIDGFIITKMDE 354 (407)
T ss_pred CCCCEEEEECCCCCccCHHHH-----HHHHHHhhccCCceEEEECCCcccHHHHHHHHHh----cCcCCCCEEEEEcccC
Confidence 246899999999644322222 2222222 2457777888775544444443332 1221234678899997
Q ss_pred CC
Q 025346 239 IK 240 (254)
Q Consensus 239 ~~ 240 (254)
..
T Consensus 355 T~ 356 (407)
T PRK12726 355 TT 356 (407)
T ss_pred CC
Confidence 54
No 378
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=0.00013 Score=64.87 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcc--ccccCCCCceEEEEE-------------------EEE----------ecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRIL-------------------GIC----------SGPE 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~--~~~~~~~~tt~~~~~-------------------~~~----------~~~~ 162 (254)
++..++++||+|+||||.+-.+...-. .........|.+.+. ... ....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 377899999999999999887765432 000011111111110 000 1245
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHcc--CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~Dl~ 239 (254)
+.+.++||.|..... .....++..+.. ...-+.+|++++.-...+...+..... .| --+++||.|-.
T Consensus 282 ~d~ILVDTaGrs~~D-----~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~-----~~i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYD-----KEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSL-----FPIDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccC-----HHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhcc-----CCcceeEEEccccc
Confidence 789999999954433 222233334333 334456777777655666555554321 22 24567999975
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
.
T Consensus 352 ~ 352 (407)
T COG1419 352 T 352 (407)
T ss_pred C
Confidence 3
No 379
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00039 Score=62.31 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC----------ccccccCCCCce-------------EEEEEEEE----------ec
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ----------KLSIVTNKPQTT-------------RHRILGIC----------SG 160 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~----------~~~~~~~~~~tt-------------~~~~~~~~----------~~ 160 (254)
.+..++++|++|+||||.+..+... ++..++..+... ........ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999877632 111111111000 00001000 12
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+..+.++||+|........+.. ...+........-+++|+|++.....+.+.+..... --+--+++||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~e--l~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAE--MKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSP----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHH--HHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcC----CCCCEEEEEeccCCC
Confidence 45789999999965432111111 122222222233688999998876666655544321 123467789998754
No 380
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.75 E-value=2.3e-05 Score=68.92 Aligned_cols=63 Identities=33% Similarity=0.420 Sum_probs=53.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.....++.|+|-+++||||+||.+...+.+.+++.|+.|+......+ +..+.|+|.||+.-.+
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPS 311 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeecC
Confidence 45567899999999999999999999998889999999987666555 3468999999986443
No 381
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.74 E-value=5.9e-05 Score=60.11 Aligned_cols=56 Identities=29% Similarity=0.283 Sum_probs=39.4
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHh
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTT 252 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~ 252 (254)
|+|++|+|+..+.......+.........+.|+++|+||+|+.+++.+.++.+.++
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 78999999988654433334333211134689999999999999888777766654
No 382
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.74 E-value=0.00033 Score=61.94 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..++.|.-|+|||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 456888999999999999999854
No 383
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.73 E-value=3.4e-05 Score=63.44 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=43.8
Q ss_pred eeEEEEecCCCcccc--hhhhhHHHHHHHHHHccCccEEEEEEeC---CCCchhHHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 163 YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 163 ~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~~~~~d~iv~vid~---~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
....++|.||..+-- ...+...+ +.... ..-.-++|-++|+ +++...+...+..+.....-..|=+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIF-RKLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHH-HHHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 468899999954321 12233332 22222 2333445566665 44444455554444444445678888999999
Q ss_pred CCChH
Q 025346 238 LIKPG 242 (254)
Q Consensus 238 l~~~~ 242 (254)
+....
T Consensus 175 l~~~y 179 (290)
T KOG1533|consen 175 LLKKY 179 (290)
T ss_pred HHHhh
Confidence 97653
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=97.73 E-value=0.00047 Score=60.67 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCce--------------EEEEEEEE---------------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT--------------RHRILGIC--------------- 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~tt--------------~~~~~~~~--------------- 158 (254)
++..++++|++|+||||++..+... ++..+...+... ........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3568999999999999977776531 121111111000 00000000
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
...+..+.++||+|........+... ..+.. ....|.+++|+|+..+.....+. ....... ..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL--~~i~~-~~~pd~~iLVl~a~~g~d~~~~a-~~f~~~~---~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDEL--KKIVR-VTKPDLVIFVGDALAGNDAVEQA-REFNEAV---GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHH--HHHHH-hhCCceEEEeeccccchhHHHHH-HHHHhcC---CCCEEEEeeecC
Confidence 11245699999999765433322221 12211 23678999999997653333222 2222111 234678899998
Q ss_pred CCh
Q 025346 239 IKP 241 (254)
Q Consensus 239 ~~~ 241 (254)
...
T Consensus 292 ~~~ 294 (336)
T PRK14974 292 DAK 294 (336)
T ss_pred CCC
Confidence 643
No 385
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.72 E-value=0.0003 Score=57.41 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+++++|+.|+||||+++++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988754
No 386
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.72 E-value=0.00037 Score=64.12 Aligned_cols=116 Identities=24% Similarity=0.268 Sum_probs=70.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE---EEEecCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL---GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~---~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
..+-..+.++|+.++|||.+++.++++.+.. ...+++...+. ....+....+.+-|.+-.......+
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~-------- 491 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS-------- 491 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCccccccccC--------
Confidence 3445679999999999999999999988764 22222211111 1122344456666655321111111
Q ss_pred HHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 189 VRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.-..+|++++++|.+++ +............ ....|+++|++|+|+-...
T Consensus 492 ---ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~--~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 492 ---KEAACDVACLVYDSSNPRSFEYLAEVYNKYFD--LYKIPCLMVATKADLDEVP 542 (625)
T ss_pred ---ccceeeeEEEecccCCchHHHHHHHHHHHhhh--ccCCceEEEeeccccchhh
Confidence 01579999999999963 3333333322222 2679999999999997654
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=0.00023 Score=55.32 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=17.7
Q ss_pred EEEEeCCCCChHHHHHHHhc
Q 025346 118 VAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~ 137 (254)
+.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68899999999999998764
No 388
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.70 E-value=3e-05 Score=62.75 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=43.6
Q ss_pred eeEEEEecCCCcccchh-hhhHHHHHHHHHHccCccEEEEEEeCCC---CchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 163 YQMILYDTPGIIEKKIH-MLDSMMMKNVRSAGINADCIVVLVDACK---APERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~~d~iv~vid~~~---~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
..+.++|+||..+--.+ .+-+.+.+.+.. ..---+++|++|+.= ..+.+.-.+..+.....-.+|-|-|++|+||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 46889999996543211 111222233333 233446788887642 2222333333333333456899999999999
Q ss_pred CCh
Q 025346 239 IKP 241 (254)
Q Consensus 239 ~~~ 241 (254)
+..
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 876
No 389
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.67 E-value=0.00043 Score=58.99 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEEeCCCCChHHHHHHHhcCc----cccccCCCCce------------------------EEEEEEEEe-
Q 025346 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTT------------------------RHRILGICS- 159 (254)
Q Consensus 109 ~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~----~~~~~~~~~tt------------------------~~~~~~~~~- 159 (254)
.++..+.+.-++.|.-|+|||||+|.++.+. ++..-+..+.. ..+....+.
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 4455666778889999999999999998652 22111111110 001111111
Q ss_pred ------------cCCeeEEEEecCCCcccchhhhhHHHH-HHHHHHccCccEEEEEEeCCCCch---------hHHHHHH
Q 025346 160 ------------GPEYQMILYDTPGIIEKKIHMLDSMMM-KNVRSAGINADCIVVLVDACKAPE---------RIDEILE 217 (254)
Q Consensus 160 ------------~~~~~~~liDtpG~~~~~~~~~~~~~~-~~~~~~~~~~d~iv~vid~~~~~~---------~~~~~~~ 217 (254)
.+.....++.|.|+.++.+ +.+.+. ..-...--..|+||-|+|+.+... .+.+...
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPaP--ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPAP--IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcHH--HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 1224578899999866542 222221 111111235799999999965211 1112222
Q ss_pred HhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHh
Q 025346 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTT 252 (254)
Q Consensus 218 ~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~ 252 (254)
++.- -=.++.||.|+...+++....+.++
T Consensus 209 QiA~------AD~II~NKtDli~~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 209 QIAL------ADRIIMNKTDLVSEEEVKKLRQRIR 237 (391)
T ss_pred HHhh------hheeeeccccccCHHHHHHHHHHHH
Confidence 2111 1146789999999988877666554
No 390
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00014 Score=66.06 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=65.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC--------ccccccCCCCce-------------EEEEEEEE----------ecCCe
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQTT-------------RHRILGIC----------SGPEY 163 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~--------~~~~~~~~~~tt-------------~~~~~~~~----------~~~~~ 163 (254)
+..++++|++|+||||++..+... ++..+...+... ........ ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 458999999999999988876532 121111111100 00000000 12346
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+.++||||........+... ..+........-+++|++++.....+.+.+..+.. . .+--+++||.|....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L--~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~-~---~~~~vI~TKlDet~~ 372 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEEL--KALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR-L---PLDGLIFTKLDETSS 372 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHH--HHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC-C---CCCEEEEeccccccc
Confidence 799999999654332222211 12222122345678889988766666665544321 1 123688999998543
No 391
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00049 Score=66.28 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcc--------ccccCCCCc--e----------EE-EEEEEE----------ecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQT--T----------RH-RILGIC----------SGPE 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~--------~~~~~~~~t--t----------~~-~~~~~~----------~~~~ 162 (254)
.+..++++|++|+||||++..+.+.-. ..+...... . .. ...... ...+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 356889999999999999998875321 111100000 0 00 000000 1234
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+.||||||........+ +..... ....+-+++|+|++...+.+.+....+...... -+-=+|+||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~-----eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-~i~glIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVS-----EQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-DVDGCIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHH-----HHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-CCCEEEEeccCCCC
Confidence 5799999999654432211 222221 345677899999987555555444332211001 13457789999754
No 392
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.62 E-value=0.00019 Score=55.94 Aligned_cols=55 Identities=27% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+......+|++++|+|++++.......+..... ..+.|+++|+||+|+.+.....
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~~~~ 60 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVL--ELGKKLLIVLNKADLVPKEVLE 60 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHH--hCCCcEEEEEEhHHhCCHHHHH
Confidence 444566799999999998754332222322222 2368999999999998654443
No 393
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.61 E-value=0.00019 Score=56.94 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=39.8
Q ss_pred HHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+++....+..+|++++|+|++.+.......+.... .+.|+++|+||+|+.+++.+...
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~ 67 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKW 67 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHH
Confidence 35566778999999999999875433222222221 35799999999999876555433
No 394
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.58 E-value=0.00015 Score=56.54 Aligned_cols=50 Identities=28% Similarity=0.307 Sum_probs=34.6
Q ss_pred cEEEEEEeCCCCchhHHHHHH-HhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~-~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
|++++|+|+.++......++. .... ..+.|+++|+||+|+.+++++.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~~~~ 51 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK--EKGKKLILVLNKADLVPKEVLRKWL 51 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh--cCCCCEEEEEechhcCCHHHHHHHH
Confidence 789999999875444333443 2222 3468999999999998876655443
No 395
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.56 E-value=0.00023 Score=61.03 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=42.2
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEV 250 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~ 250 (254)
.++...+..+|+|++|+|+..+.......+...+ .+.|+++|+||+|+.++.+.....+.
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~ 72 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKY 72 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHH
Confidence 5566778999999999999875444333343433 25799999999999876555544333
No 396
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.54 E-value=0.00013 Score=58.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+.+.|++|+|||+|+.+++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 36899999999999999998764
No 397
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.51 E-value=0.00029 Score=62.09 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHhc
Q 025346 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTTC 253 (254)
Q Consensus 183 ~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~~ 253 (254)
..+...+...+..+|+|+.|+|+.++...-....++.......+...|+|+||+|+++.+.+.+++.++..
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 33446677778899999999999986533222233333222345889999999999999999999988754
No 398
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.47 E-value=0.0022 Score=49.08 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=58.0
Q ss_pred EEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 119 ~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+.-|.+|+|||++...+...-.. .+...-...... ..-...+.++|||+..+.. ....+..+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-----~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~~-----------~~~~l~~a 67 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-----LGKRVLLLDADLGLANLDYDYIIIDTGAGISDN-----------VLDFFLAA 67 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-----CCCcEEEEECCCCCCCCCCCEEEEECCCCCCHH-----------HHHHHHhC
Confidence 45578899999998766532110 010000000000 0111678999999843221 12346789
Q ss_pred cEEEEEEeCCCC-chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 197 DCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 197 d~iv~vid~~~~-~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
|.++++++.+.. .......+..+.. .....++.+|+|+++-.
T Consensus 68 D~vviv~~~~~~s~~~~~~~l~~l~~-~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 68 DEVIVVTTPEPTSITDAYALIKKLAK-QLRVLNFRVVVNRAESP 110 (139)
T ss_pred CeEEEEcCCChhHHHHHHHHHHHHHH-hcCCCCEEEEEeCCCCH
Confidence 999999998763 2333333333322 22456788999999754
No 399
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.47 E-value=0.00021 Score=57.69 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 185 ~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+...+..++..+|++++|+|+++........+.. ...+.|+++|+||+|+.+++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~----~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL----FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH----hcCCCcEEEEEEchhcCCCC
Confidence 3455667789999999999998754333222211 12468999999999997543
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.46 E-value=0.0002 Score=65.13 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCce-------------EEEEEEEE--------------ec
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~tt-------------~~~~~~~~--------------~~ 160 (254)
++..++++|.+|+||||++..+... ++..+...+... ........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4568999999999999999877531 111111111000 00001000 01
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~D 237 (254)
....+.++||||....... .++.+... ...+|.+++|+|++.+.... ..... +....+ .-+|+||+|
T Consensus 174 ~~~DvVIIDTAGr~~~d~~-----lm~El~~l~~~~~pdevlLVvda~~gq~av-~~a~~----F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 174 KKADVIIVDTAGRHALEED-----LIEEMKEIKEAVKPDEVLLVIDATIGQQAK-NQAKA----FHEAVGIGGIIITKLD 243 (437)
T ss_pred hcCCEEEEECCCcccchHH-----HHHHHHHHHHHhcccceeEEEeccccHHHH-HHHHH----HHhcCCCCEEEEeccc
Confidence 2247899999996443222 22222222 44688999999997753222 22222 222233 357889999
Q ss_pred CCC
Q 025346 238 LIK 240 (254)
Q Consensus 238 l~~ 240 (254)
...
T Consensus 244 ~~a 246 (437)
T PRK00771 244 GTA 246 (437)
T ss_pred CCC
Confidence 743
No 401
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.45 E-value=0.00035 Score=60.32 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=42.3
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEV 250 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~ 250 (254)
.++...+..+|+|++|+|+..+.......+..... +.|+++|+||+|+.+........+.
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~ 75 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEY 75 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHH
Confidence 55667789999999999998765443344444332 5899999999999876545444433
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0009 Score=61.55 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=62.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--------cccccCCCC-ce-----------EE-EEEEE----------EecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQ-TT-----------RH-RILGI----------CSGPE 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--------~~~~~~~~~-tt-----------~~-~~~~~----------~~~~~ 162 (254)
.+..++++|++|+||||++..+.+.- +..+...+. .+ .. ..... ....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 45689999999999999999887532 111111111 00 00 00000 01134
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
....++||+|...... .+.. ....+.. .....-.++|+|++.....+.+...... .....-+|+||+|-..
T Consensus 335 ~d~VLIDTaGr~~~d~-~~~e-~~~~l~~-~~~p~e~~LVLdAt~~~~~l~~i~~~f~----~~~~~g~IlTKlDet~ 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-MVSE-QIAMLHG-AGAPVKRLLLLNATSHGDTLNEVVQAYR----GPGLAGCILTKLDEAA 405 (484)
T ss_pred CCeEEeCCCCcChhhH-HHHH-HHHHHhc-cCCCCeeEEEEeCCCcHHHHHHHHHHhc----cCCCCEEEEeCCCCcc
Confidence 5689999999654321 1111 1111111 1113347899999876655554443322 2234467789999754
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00047 Score=58.87 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------e----EE-EEEEEEe-------------cC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T----RH-RILGICS-------------GP 161 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------t----~~-~~~~~~~-------------~~ 161 (254)
+..+++++|++|+||||++..+... ....+...+.. + .. ......+ ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4579999999999999998877543 11111111100 0 00 0000000 12
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+..+.++||||........+... ..+.. ....+-+++|++++............... -.+--+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el--~~~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f~~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIEIITNFKD----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHH--HHHHh-hhCCCeEEEEEcCccCHHHHHHHHHHhCC----CCCCEEEEEeecCCC
Confidence 46899999999654332333222 11111 23567789999998755555555544322 233467889999764
No 404
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00017 Score=63.10 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=72.4
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccccc-------------CCCCceEEEEEE---------EE------------ecC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------------NKPQTTRHRILG---------IC------------SGP 161 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~-------------~~~~tt~~~~~~---------~~------------~~~ 161 (254)
.+++++|...+|||||+-.+...+..... -..+.|...... .+ +..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 58999999999999999887755332100 011111110000 01 112
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..-++++|.+|....-...+ ..+.. -..|..++|+.+..+.....+....+.. .-++|++++++|+|+.++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi-----~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~--AL~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTI-----HGLTG--YTPHFACLVVSADRGITWTTREHLGLIA--ALNIPFFVLVTKMDLVDR 318 (591)
T ss_pred cceEEEeecccchhhheeee-----eeccc--CCCceEEEEEEcCCCCccccHHHHHHHH--HhCCCeEEEEEeeccccc
Confidence 23488999999321100011 11111 1467888999888765443333333333 347999999999999999
Q ss_pred HhHHHHHHHH
Q 025346 242 GEIAKKLEVT 251 (254)
Q Consensus 242 ~~~~~~~~~~ 251 (254)
..+++.++.+
T Consensus 319 ~~~~~tv~~l 328 (591)
T KOG1143|consen 319 QGLKKTVKDL 328 (591)
T ss_pred hhHHHHHHHH
Confidence 7766655544
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=97.42 E-value=0.0021 Score=58.45 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=37.8
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
+..+.++||||........+... ..+.. ...++.+++|+|+..+ +........+.... ...-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL--~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~~---~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDEL--KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEAL---GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHH--HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhhC---CCCEEEEeCccCc
Confidence 46799999999644322222111 22222 2367788999998653 22222222222211 1235777999964
No 406
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.39 E-value=0.00038 Score=59.73 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
......+.++|.+|+|||||++++++.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999887753
No 407
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0003 Score=60.06 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=52.3
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chh-HHHHH--HHhhcccCCCCCEEEEEecCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PER-IDEIL--EEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~-~~~~~--~~~~~~~~~~~piivV~nK~Dl 238 (254)
+.+.|+|+|| +..+|.....-..-.|+.++++....+ .+. ..+.+ .++.+ -..++++-||+||
T Consensus 125 RHVSfVDCPG---------HDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----LkhiiilQNKiDl 191 (466)
T KOG0466|consen 125 RHVSFVDCPG---------HDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDL 191 (466)
T ss_pred EEEEeccCCc---------hHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----hceEEEEechhhh
Confidence 4578999999 344555555555566888888877653 111 11222 22222 2578999999999
Q ss_pred CChHhHHHHHHHHhcC
Q 025346 239 IKPGEIAKKLEVTTCF 254 (254)
Q Consensus 239 ~~~~~~~~~~~~~~~~ 254 (254)
..+++..+..+++++|
T Consensus 192 i~e~~A~eq~e~I~kF 207 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKF 207 (466)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9998888887777665
No 408
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.25 E-value=0.00084 Score=56.58 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=38.3
Q ss_pred HccCccEEEEEEeCCC---CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 192 AGINADCIVVLVDACK---APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~---~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++.++|.+++|+|+.+ ++..+..|+.... ..++|+++|+||+||.+.+++.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~---~~~i~~vIV~NK~DL~~~~~~~ 86 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAE---AQNIEPIIVLNKIDLLDDEDME 86 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECcccCCCHHHH
Confidence 5789999999999986 3455666665432 2579999999999998765554
No 409
>PRK12289 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00081 Score=59.63 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=39.1
Q ss_pred ccCccEEEEEEeCCCCc-h--hHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 193 GINADCIVVLVDACKAP-E--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~-~--~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
+.++|.+++|+|+.++. . .+..++... ...++|+++|+||+||.++++.....+.+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a---~~~~ip~ILVlNK~DLv~~~~~~~~~~~~ 145 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKA---ESTGLEIVLCLNKADLVSPTEQQQWQDRL 145 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHH---HHCCCCEEEEEEchhcCChHHHHHHHHHH
Confidence 68899999999997632 2 234444432 13579999999999999776655444433
No 410
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.00056 Score=59.29 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=65.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------------eEEEEEEE---------E-----
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------------TRHRILGI---------C----- 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------------t~~~~~~~---------~----- 158 (254)
.++..++++|-.|+||||.|-.+... ++-......+. ....+... +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45678999999999999999877632 11000000000 00111111 0
Q ss_pred -ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc-----EEEEEEeCCCCchhHHH--HHHHhhcccCCCCCEE
Q 025346 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD-----CIVVLVDACKAPERIDE--ILEEGVGDHKDKLPIL 230 (254)
Q Consensus 159 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d-----~iv~vid~~~~~~~~~~--~~~~~~~~~~~~~pii 230 (254)
...+..+.++||+|-.+...+-|+.. +.+.+.....+ -+++++|++.+-..+.+ .+.+... + --
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL--~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-----l-~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDEL--KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-----L-DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHH--HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-----C-ce
Confidence 12457799999999877765555443 33334344333 38888899876544333 2333221 1 24
Q ss_pred EEEecCCC
Q 025346 231 LVLNKKDL 238 (254)
Q Consensus 231 vV~nK~Dl 238 (254)
+++||+|-
T Consensus 289 iIlTKlDg 296 (340)
T COG0552 289 IILTKLDG 296 (340)
T ss_pred EEEEeccc
Confidence 56788884
No 411
>PRK01889 GTPase RsgA; Reviewed
Probab=97.19 E-value=0.00055 Score=60.89 Aligned_cols=60 Identities=38% Similarity=0.500 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccC-------CCCceEEEEEEEEecCCeeEEEEecCCCccc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (254)
.+.+++++|.+|+|||||+|.+++......+. ...+|.......+... ..++||||+...
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~~ 260 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMREL 260 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhhh
Confidence 35689999999999999999999754322211 1123332222233222 358899998543
No 412
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.19 E-value=0.0062 Score=52.69 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
+.+..|+++|..++||||||.++-+.+
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc
Confidence 455689999999999999999998765
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.013 Score=45.77 Aligned_cols=115 Identities=21% Similarity=0.292 Sum_probs=59.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec--CCeeEEEEecC-CC---------cc-------
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTP-GI---------IE------- 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDtp-G~---------~~------- 175 (254)
..++.+.|+||+||||++.++...=- .........+...+.. .-..+.++|+. |= ..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~----~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR----EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH----hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 45899999999999999998874211 0101111111111111 12235555555 20 00
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCC----chhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~----~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
...+.++......+...+..||+|+ +|--.+ .......+.+.+ ....|++.++.+-+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl---~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVL---KSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHh---cCCCcEEEEEecccC
Confidence 1123344445556666677788654 554322 223334444444 356788888886643
No 414
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0028 Score=55.96 Aligned_cols=91 Identities=20% Similarity=0.361 Sum_probs=52.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCC-------------ceEEEEEEEE---------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQ-------------TTRHRILGIC--------------- 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~-------------tt~~~~~~~~--------------- 158 (254)
.++..|.++|-.|+||||.+..+... +...+....+ .++.++.+.+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 34457999999999999999877632 1111111110 0112222221
Q ss_pred -ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH--HccCccEEEEEEeCCCC
Q 025346 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS--AGINADCIVVLVDACKA 208 (254)
Q Consensus 159 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~~d~iv~vid~~~~ 208 (254)
..+++.+.|+||.|-.... ..+.+.... ..-.+|-||||+|++-+
T Consensus 179 fKke~fdvIIvDTSGRh~qe-----~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQE-----ASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred HHhcCCcEEEEeCCCchhhh-----HHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 1245789999999943332 222222222 24569999999999864
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.08 E-value=0.0034 Score=57.08 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=38.6
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
+..+.++||||........+... ..+.. ...++.+++|+|+..+. ............. ...-+|+||+|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL--~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~v---~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEEL--AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNERL---GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHH--HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhhC---CCCEEEEeCccCc
Confidence 45699999999644322222111 22222 34578899999987542 3222222222211 1246778999953
No 416
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0021 Score=58.49 Aligned_cols=116 Identities=23% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceE---------------EEE--EEE--------------Ee
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRI--LGI--------------CS 159 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~---------------~~~--~~~--------------~~ 159 (254)
.....+++.++.....|||||...+..+.--+.....+.++ ... .-+ .+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 33445567888888999999999987653221112222211 000 000 12
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCch-hHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~-~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
..+.-+.+||.||..+.+ ....+.++-.|+.+.|+|.-++.- ..+..+.+.+. ..+.=++|.||+|.
T Consensus 95 ~~~FLiNLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~---ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---ERIKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH---hhccceEEeehhhH
Confidence 345668999999976654 445566888999999999977531 11222222221 22333678899997
No 417
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.04 E-value=0.0016 Score=57.19 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccc-------------cCCCCceEE-------------------------E
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------------TNKPQTTRH-------------------------R 153 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~-------------~~~~~tt~~-------------------------~ 153 (254)
+.-..+++++|...+|||||+-.+...+.... .-..+.|.. .
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 33456899999999999999876654322100 000011100 0
Q ss_pred EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEE
Q 025346 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLV 232 (254)
Q Consensus 154 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV 232 (254)
....+.....-++|||.+|.+..-...+ +....+..|...+++-+..+.--.. +.+-..+ .-..|+++|
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTv-------FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLAL---aL~VPVfvV 279 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTV-------FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLAL---ALHVPVFVV 279 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheee-------eccccCCCCceEEEecccccceeccHHhhhhhh---hhcCcEEEE
Confidence 0111222334588999999432111110 1112456788888888876432222 2222111 246899999
Q ss_pred EecCCCCChHhHHHHHHHH
Q 025346 233 LNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 233 ~nK~Dl~~~~~~~~~~~~~ 251 (254)
++|+|..+...+++..+.+
T Consensus 280 VTKIDMCPANiLqEtmKll 298 (641)
T KOG0463|consen 280 VTKIDMCPANILQETMKLL 298 (641)
T ss_pred EEeeccCcHHHHHHHHHHH
Confidence 9999999988777766554
No 418
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.03 E-value=0.00049 Score=65.62 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE-------------------------------------
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR------------------------------------- 153 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~------------------------------------- 153 (254)
.....+.|+++|..++||||.++.+.|..+..-+ ....|+.+
T Consensus 25 ~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg-~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 25 SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRG-VGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred CcccCCceEEecCCCCcchhHHHHhhcccccccc-ccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 3455678999999999999999999997553211 11111100
Q ss_pred -------------------EEEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHccCccEEEEEEeCCCCch
Q 025346 154 -------------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAPE 210 (254)
Q Consensus 154 -------------------~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~ 210 (254)
........-..++++|.||+...+ ++.+..........++.....+++.+...+..-
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ 183 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI 183 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh
Confidence 000111122468899999986433 345556666777788899999998888765322
Q ss_pred hHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 211 RIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 211 ~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
....++......-..+..++.|++|.|+++.
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 2223333333333455667777777777654
No 419
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.01 E-value=0.0035 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEeCCCCChHHHHHHHhcC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~ 138 (254)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999998853
No 420
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.99 E-value=0.0091 Score=42.95 Aligned_cols=71 Identities=28% Similarity=0.335 Sum_probs=41.4
Q ss_pred EEEEe-CCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 118 VAVLG-KPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 118 ~~~~G-~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++.| ..|+||||+...+...- .. .+. .......+ ....+.++|+|+..... ....+..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~----~~~--~vl~~d~d-~~~d~viiD~p~~~~~~-----------~~~~l~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-AR----RGK--RVLLIDLD-PQYDYIIIDTPPSLGLL-----------TRNALAAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-Hh----CCC--cEEEEeCC-CCCCEEEEeCcCCCCHH-----------HHHHHHHC
Confidence 45555 66899999987665321 10 111 01111111 12679999999943321 12345679
Q ss_pred cEEEEEEeCCC
Q 025346 197 DCIVVLVDACK 207 (254)
Q Consensus 197 d~iv~vid~~~ 207 (254)
|.++.+++.+.
T Consensus 63 d~viv~~~~~~ 73 (104)
T cd02042 63 DLVLIPVQPSP 73 (104)
T ss_pred CEEEEeccCCH
Confidence 99999998876
No 421
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.99 E-value=0.002 Score=46.92 Aligned_cols=100 Identities=17% Similarity=0.023 Sum_probs=52.6
Q ss_pred EEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEE
Q 025346 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (254)
Q Consensus 120 ~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 199 (254)
+-+..|+||||+...+...-.. .. +...-....... .+..+.++|||+.... .....+..+|.+
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~-~~---~~~~~l~d~d~~-~~~D~IIiDtpp~~~~-----------~~~~~l~~aD~v 68 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAK-EA---GRRVLLVDLDLQ-FGDDYVVVDLGRSLDE-----------VSLAALDQADRV 68 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHh-cC---CCcEEEEECCCC-CCCCEEEEeCCCCcCH-----------HHHHHHHHcCeE
Confidence 3456789999987766532110 00 000000000000 1127899999984332 122345778999
Q ss_pred EEEEeCCCC-chhHHHHHHHhhcccCC-CCCEEEEEec
Q 025346 200 VVLVDACKA-PERIDEILEEGVGDHKD-KLPILLVLNK 235 (254)
Q Consensus 200 v~vid~~~~-~~~~~~~~~~~~~~~~~-~~piivV~nK 235 (254)
+++++.+.. .......+..+.+.... ..++.+|+|+
T Consensus 69 lvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 69 FLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 999988763 33333333333222222 4578888886
No 422
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00048 Score=55.57 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~ 152 (254)
++..++++|++|+|||||+++++..........+.||+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~ 41 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRA 41 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCC
Confidence 345699999999999999999987643323344566654
No 423
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.95 E-value=0.0018 Score=54.34 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=48.5
Q ss_pred cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc---------hhHHHHHH---Hhhc-ccCCC
Q 025346 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERIDEILE---EGVG-DHKDK 226 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~---------~~~~~~~~---~~~~-~~~~~ 226 (254)
.+..++..+|..|..+.+ ..|...+...-+|+||+.++..- ..+.+.+. .+.. .....
T Consensus 199 Vdkv~FhMfDVGGQRDeR---------rKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t 269 (379)
T KOG0099|consen 199 VDKVNFHMFDVGGQRDER---------RKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT 269 (379)
T ss_pred ccccceeeeccCCchhhh---------hhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence 344668888888854443 66778899999999999987621 11122111 1111 11245
Q ss_pred CCEEEEEecCCCCChHh
Q 025346 227 LPILLVLNKKDLIKPGE 243 (254)
Q Consensus 227 ~piivV~nK~Dl~~~~~ 243 (254)
+.+|+.+||.|++.+.-
T Consensus 270 isvIlFLNKqDllaeKi 286 (379)
T KOG0099|consen 270 ISVILFLNKQDLLAEKI 286 (379)
T ss_pred hheeEEecHHHHHHHHH
Confidence 78999999999986543
No 424
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00018 Score=65.20 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHhhhcccccCCCCCCCCc-----------cChHhhhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCC
Q 025346 57 QQKLWSNQREMDLDDGDEMEF-----------DDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPN 125 (254)
Q Consensus 57 ~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 125 (254)
|.++-..++.+++..|+.+-. .....+.++.+.|....+.+.++.+ ...++..++++|++|
T Consensus 503 Q~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF--------~v~pGktvAlVG~SG 574 (790)
T KOG0056|consen 503 QKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISF--------TVQPGKTVALVGPSG 574 (790)
T ss_pred HHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceE--------EecCCcEEEEECCCC
Confidence 555555566666554332211 1235788889999999999998876 567788999999999
Q ss_pred CChHHHHHHHh
Q 025346 126 VGKSTLANQMI 136 (254)
Q Consensus 126 ~gKssl~~~~~ 136 (254)
+||||++..++
T Consensus 575 aGKSTimRlLf 585 (790)
T KOG0056|consen 575 AGKSTIMRLLF 585 (790)
T ss_pred CchhHHHHHHH
Confidence 99999998765
No 425
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.88 E-value=0.0025 Score=58.01 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=50.8
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTT 252 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~ 252 (254)
+++-..+...|+||.++|+.++.-.....+....+........++++||+||+.++++..+.+++.
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~ 231 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFR 231 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHH
Confidence 445566889999999999999654444445555555556678899999999999999988877763
No 426
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.00019 Score=67.68 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=68.8
Q ss_pred cCCcchhhhccccccCCceeeeeecccccccccchHHHHHHHHhhhcccccCCCCCCC----------CccChHhhhhhc
Q 025346 18 YSTLTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEM----------EFDDASSFLSLS 87 (254)
Q Consensus 18 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~~~~~~~~ 87 (254)
..+|++|+-|.+..-..-..++...++. .+.+....|+|++.|-+.. ......++.++.
T Consensus 404 ~g~L~sFllY~~~~g~sl~~ls~~ys~l-----------mkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~Vs 472 (716)
T KOG0058|consen 404 SGALSSFLLYQVQLGSSLSGLSSFYSEL-----------MKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVS 472 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEee
Confidence 4567888888887766666665555544 4455555666665542111 122345788888
Q ss_pred cCCcCCC--CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 88 EKPDRNM--ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 88 ~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++|-..- +.++++.. ...++..++++||+|.||||+++.+.+
T Consensus 473 FaYP~Rp~~~Vlk~lsf--------ti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSF--------TIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eecCCCCCchhhcCcee--------eeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 8887554 46666665 667788999999999999999998874
No 427
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.77 E-value=0.00018 Score=67.89 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=60.4
Q ss_pred cchhhhccccccCCceeeeeecccccccccchHHHHHHHHhhhcccccCCCCCCC-C--------ccChHhhhhhccCCc
Q 025346 21 LTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEM-E--------FDDASSFLSLSEKPD 91 (254)
Q Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--------~~~~~~~~~~~~~~~ 91 (254)
+.+|+.+...+..+...+....... +......+|..++.+++.. . ......+.++...|.
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~ 339 (567)
T COG1132 271 LAAFILYLLRLLTPILQLGEVVSLL-----------QRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYP 339 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcC
Confidence 4555666655555555555444444 3333444444444443111 1 112246777788887
Q ss_pred CCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 92 RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+.++++.. ...++.+++++|++|+||||+++.+.+-
T Consensus 340 ~~~~vl~~is~--------~i~~Ge~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 340 GKKPVLKDISF--------SIEPGEKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred CCCccccCceE--------EEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 65555666654 4567789999999999999999998864
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.76 E-value=0.017 Score=47.90 Aligned_cols=46 Identities=28% Similarity=0.243 Sum_probs=32.0
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..++|.++.|+|.+...-...+.+.++..... =.++.+|+||.|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg-~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELG-IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-CceEEEEEeeccch
Confidence 56899999999998633333344444444332 26899999999966
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.021 Score=51.36 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=29.2
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCCc
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAP 209 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~~ 209 (254)
...+.|+||+|-... +..++...... .-.+|-+++|+|+.-+-
T Consensus 182 ~~DvvIvDTAGRl~i-----de~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 182 GYDVVIVDTAGRLHI-----DEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CCCEEEEeCCCcccc-----cHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 367999999994332 33334443332 45789999999997753
No 430
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.73 E-value=0.03 Score=44.13 Aligned_cols=64 Identities=17% Similarity=0.092 Sum_probs=39.0
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+.++|||+-... .....+..+|.++++++.+.. .......+..+.. . ....+.+|+|++|...
T Consensus 64 d~viiD~p~~~~~-----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~-~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER-----------GFITAIAPADEALLVTTPEISSLRDADRVKGLLEA-L-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH-----------HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHH-c-CCceEEEEEeCCcccc
Confidence 6999999983221 112335679999999988763 3333333333222 1 2235778999998754
No 431
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.73 E-value=0.0057 Score=54.23 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
..+...+...|+||-|+|+.++...-...++..++...+...++.|+|||||++......++..+
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~l 269 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHL 269 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHH
Confidence 33445567899999999999976555566666677667788999999999999987776666544
No 432
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.72 E-value=0.0012 Score=54.19 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..+..++++|++|+|||||++.+....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 345678899999999999999997543
No 433
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.71 E-value=0.0033 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=19.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...+++.|++|+|||++++.+...-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
No 434
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.71 E-value=0.0041 Score=55.45 Aligned_cols=51 Identities=31% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.....+...+++|++|+|+.+........+.... .+.|+++|+||+|+++.
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k 105 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPK 105 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCC
Confidence 4455566789999999999875544444444432 26799999999999764
No 435
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.00067 Score=54.12 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~ 152 (254)
++..+++.||+|+||||++++++... ...-....||+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~ 40 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRK 40 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCC
Confidence 45678999999999999999999776 323333445543
No 436
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.69 E-value=0.0053 Score=52.98 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=36.1
Q ss_pred HccCccEEEEEEeCCCCc---hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~---~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.+.++|.+++|+|+.++. ..++.++.... ..++|+++|+||+||.++.+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~---~~~ip~iIVlNK~DL~~~~~ 126 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAE---AAGIEPVIVLTKADLLDDEE 126 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHH---HcCCCEEEEEEHHHCCChHH
Confidence 378899999999998754 44455544332 24689999999999987643
No 437
>PRK00098 GTPase RsgA; Reviewed
Probab=96.66 E-value=0.0041 Score=53.97 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=32.9
Q ss_pred ccCccEEEEEEeCCCCc--hh-HHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKAP--ER-IDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~--~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+.++|.+++|+|+.++. .. +..++.... ..++|+++|+||+|+.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~---~~~ip~iIVlNK~DL~~~ 126 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAE---ANGIKPIIVLNKIDLLDD 126 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEhHHcCCC
Confidence 68999999999997632 22 344443322 357899999999999743
No 438
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.64 E-value=0.02 Score=42.76 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998864
No 439
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.63 E-value=0.03 Score=38.90 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=43.7
Q ss_pred EEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCcc
Q 025346 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 197 (254)
+++.|..|+||||+...+...-.. .+.. ...++ .+.++|+|+........ .......++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----VLLID----DYVLIDTPPGLGLLVLL--------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----EEEEC----CEEEEeCCCCccchhhh--------hhhhhhhCC
Confidence 678899999999999987743211 1110 11111 78999999954432100 123466889
Q ss_pred EEEEEEeCCC
Q 025346 198 CIVVLVDACK 207 (254)
Q Consensus 198 ~iv~vid~~~ 207 (254)
.++.+++...
T Consensus 61 ~vi~v~~~~~ 70 (99)
T cd01983 61 LVIIVTTPEA 70 (99)
T ss_pred EEEEecCCch
Confidence 9999998876
No 440
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0011 Score=55.17 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++-.++++|++|||||||++.+.|-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567789999999999999999998754
No 441
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.56 E-value=0.0016 Score=52.25 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred hhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 83 FLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
+.++.++|......+.++.+ ...++-.+.++|++|+|||||++.+++..
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~--------~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 4 FENVSKAYPGGREALRDVSF--------HIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ehhhhhhcCCCchhhhCceE--------eecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45567777766546666654 45667789999999999999999998754
No 442
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.54 E-value=0.0038 Score=56.23 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=53.4
Q ss_pred EEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc---------hhH---HHHHHHh
Q 025346 153 RILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERI---DEILEEG 219 (254)
Q Consensus 153 ~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~---------~~~---~~~~~~~ 219 (254)
.....+.. .+..+.++|+.|....+ ..|..++.+.++||||++.++.. ..+ ...+..+
T Consensus 225 i~e~~f~~~~~~~~~~~DvGGqr~eR---------kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i 295 (389)
T PF00503_consen 225 ITEIDFNFSGSRKFRLIDVGGQRSER---------KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESI 295 (389)
T ss_dssp EEEEEEEE-TTEEEEEEEETSSGGGG---------GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHH
T ss_pred eeEEEEEeecccccceecCCCCchhh---------hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHH
Confidence 33444555 78899999999954332 55677889999999999986521 122 2334444
Q ss_pred hcc-cCCCCCEEEEEecCCCCC
Q 025346 220 VGD-HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 220 ~~~-~~~~~piivV~nK~Dl~~ 240 (254)
... ...+.|++|++||.|+..
T Consensus 296 ~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 296 CNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp HTSGGGTTSEEEEEEE-HHHHH
T ss_pred HhCcccccCceEEeeecHHHHH
Confidence 432 236799999999999854
No 443
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0013 Score=60.50 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=43.1
Q ss_pred hHhhhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 80 ASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+.++...|.+..+.++.+.+ ..+++.+++++|.+|+||||+++.+++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf--------~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSF--------TIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeE--------EecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 36788888889888888888776 678889999999999999999998873
No 444
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.49 E-value=0.013 Score=50.48 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc-------------
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------------- 177 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~------------- 177 (254)
...+.+.++++|++|.|||+++++|...... ..+ .. ....++..+.+|.-.+..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d-~~-----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSD-ED-----------AERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCC-CC-----------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 4566778999999999999999999976532 111 11 112356677776532211
Q ss_pred h---hhhhHHHHHHHHHHccCccEEEEEEeCCC-----CchhHHHHHHHhhcccC--CCCCEEEEEec
Q 025346 178 I---HMLDSMMMKNVRSAGINADCIVVLVDACK-----APERIDEILEEGVGDHK--DKLPILLVLNK 235 (254)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~~~d~iv~vid~~~-----~~~~~~~~~~~~~~~~~--~~~piivV~nK 235 (254)
+ .... .........++...+=+++||=-+ +.......+.. ++... -++|++.||++
T Consensus 124 ~~~~~~~~-~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~-LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVA-KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNA-LKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHH-HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHH-HHHHhhccCCCeEEeccH
Confidence 0 1111 112334456677777788898533 22333333322 22222 46899998875
No 445
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.49 E-value=0.0027 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.|++.|++|+||||+++.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 446
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=96.48 E-value=0.0015 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQM 135 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~ 135 (254)
..+..+++++|...+||||+|+.+
T Consensus 36 arrelkllllgtgesgkstfikqm 59 (359)
T KOG0085|consen 36 ARRELKLLLLGTGESGKSTFIKQM 59 (359)
T ss_pred hhhhheeeeecCCCcchhhHHHHH
Confidence 344568999999999999999876
No 447
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.44 E-value=0.0017 Score=60.79 Aligned_cols=50 Identities=26% Similarity=0.194 Sum_probs=36.3
Q ss_pred HhhhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++..+|......+++++. ...++.+++++|++|+|||||++.+++-
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl--------~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSL--------DLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEEEEEecCCCCceeecceE--------EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455566666543334555543 5567889999999999999999999865
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.39 E-value=0.0031 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++++|++|+||||+++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 368999999999999999998754
No 449
>PRK13695 putative NTPase; Provisional
Probab=96.34 E-value=0.051 Score=43.05 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
++++.|.+|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
No 450
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.30 E-value=0.00066 Score=65.41 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=40.4
Q ss_pred HhhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 81 SSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..+.++.+.|...- ..+++++. ..+++.+++++|.+|+|||||.+.+.+--
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL--------~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSL--------EIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeE--------EeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57777788887774 35666654 55677899999999999999999998753
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.27 E-value=0.003 Score=51.66 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++-.++++|++|+|||||+.++-+-+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45667789999999999999999998654
No 452
>PF05729 NACHT: NACHT domain
Probab=96.25 E-value=0.022 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+++.|++|+|||+++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4889999999999999988754
No 453
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.0024 Score=56.08 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
....+-.++++||+||||||+++.+.|-.
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556679999999999999999998764
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.24 E-value=0.0051 Score=46.54 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
.++..++++|++|+|||||++.+.+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 445689999999999999999998764
No 455
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.21 E-value=0.0047 Score=56.76 Aligned_cols=107 Identities=15% Similarity=0.250 Sum_probs=67.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..++.|+|..++|||+|+.+++...+. ....|...+..-....++...-+.+.|-.|..+ ..+..
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~-~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~--------------aQft~ 94 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYT-QDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD--------------AQFCQ 94 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceec-cccCCcCccceeeEEeeccceEeeeecccCCch--------------hhhhh
Confidence 458999999999999999999988775 233333333333444555566677778777211 12345
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecC
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKK 236 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~ 236 (254)
..|++|||+...+ +++.+........... ...+|+++|+++-
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD 139 (749)
T ss_pred hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc
Confidence 6788888888766 4444444433333222 2457788777763
No 456
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0072 Score=55.58 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=37.9
Q ss_pred hhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 82 SFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 82 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++.++|.... +.+.+++. ....+.+++++|.+||||||+++.+.+.
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l--------~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNL--------TLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred eeccceeecCCCccchhhccce--------eecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 5566667766555 56666664 5567889999999999999999999863
No 457
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.005 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++..++++|++|+|||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999875
No 458
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.13 E-value=0.069 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
-+.++||--+||||||++|+..
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred EEEeecCcccCchhHHHHHHHH
Confidence 5899999999999999999854
No 459
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.13 E-value=0.0055 Score=50.74 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++-.++++|++|+|||||+|.+.+-.
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44667789999999999999999987654
No 460
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0052 Score=54.57 Aligned_cols=119 Identities=16% Similarity=0.107 Sum_probs=72.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcc------------------------------ccccCCCCceEEEEEEEEecC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL------------------------------SIVTNKPQTTRHRILGICSGP 161 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~ 161 (254)
.....+++++|.-.+||||+-..++.... .......+.|......++...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 35567899999999999999887764310 001122334555556667777
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-----chh--HHHHHHHhhcccCCCCCEEEEEe
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-----PER--IDEILEEGVGDHKDKLPILLVLN 234 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-----~~~--~~~~~~~~~~~~~~~~piivV~n 234 (254)
..++.+.|+||.-..-+ ....-+.+||+-++|+.+..+ ++. .......+.+. ..-...++++|
T Consensus 156 ~~~ftiLDApGHk~fv~---------nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vN 225 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVP---------NMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLIN 225 (501)
T ss_pred ceeEEeeccCcccccch---------hhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEE
Confidence 88999999999533322 222336788999999988542 110 11111111111 12357899999
Q ss_pred cCCCCC
Q 025346 235 KKDLIK 240 (254)
Q Consensus 235 K~Dl~~ 240 (254)
|+|-..
T Consensus 226 KMddPt 231 (501)
T KOG0459|consen 226 KMDDPT 231 (501)
T ss_pred eccCCc
Confidence 999754
No 461
>PRK08118 topology modulation protein; Reviewed
Probab=96.11 E-value=0.0052 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+|+|+|++|+||||+...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 462
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.11 E-value=0.016 Score=50.83 Aligned_cols=63 Identities=29% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHh
Q 025346 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTT 252 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~ 252 (254)
.......+...|+|+.|+|+.++.......+..+.. +.|.++|+||+||.+....+++.+.+.
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~ 87 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFK 87 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHH
Confidence 356667789999999999999876655555555544 345599999999999988877766654
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.08 E-value=0.0047 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEeCCCCChHHHHHHHhcC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~ 138 (254)
++++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999875
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.08 E-value=0.004 Score=50.75 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++..++++|++|+|||||++.+.+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556789999999999999999998753
No 465
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.05 E-value=0.0056 Score=46.55 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.4
Q ss_pred EEEEeCCCCChHHHHHHHhc
Q 025346 118 VAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~ 137 (254)
++++|++|+||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 466
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.0031 Score=53.05 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=32.2
Q ss_pred hhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 85 SLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++...|... ..++++.. ...++..++++||.|+|||||++.+++
T Consensus 9 nl~v~y~~~-~vl~~i~l--------~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 9 NLTVSYGNR-PVLEDISL--------SVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eeEEEECCE-eeeeccEE--------EEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 344445533 35666554 445567899999999999999999998
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.02 E-value=0.003 Score=53.36 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+++..++++|+.|||||||++++.+-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4556778999999999999999999873
No 468
>PRK07261 topology modulation protein; Provisional
Probab=96.02 E-value=0.0057 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
+|+++|++|+|||||+..+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 469
>PRK13796 GTPase YqeH; Provisional
Probab=96.01 E-value=0.024 Score=50.71 Aligned_cols=49 Identities=29% Similarity=0.221 Sum_probs=34.6
Q ss_pred HHHHccCcc-EEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 189 VRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 189 ~~~~~~~~d-~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
....+...+ +|++|+|+.+........+.... .+.|+++|+||+|+.+.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~ 111 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPK 111 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCC
Confidence 334455555 99999999886555544444433 36799999999999863
No 470
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.99 E-value=0.0067 Score=48.49 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...+..++++|++|+|||||+|.+.+=.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 3556789999999999999999998643
No 471
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.98 E-value=0.0055 Score=51.28 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456678999999999999999999875
No 472
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0044 Score=51.37 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=31.5
Q ss_pred hccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 86 LSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+.+.|......+.+++. ....+-.++++|++|+|||||+..+-+
T Consensus 9 l~k~yp~~~~aL~~Vnl--------~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 9 LSKTYPGGHQALKDVNL--------EINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eeeecCCCceeeeeEeE--------EeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 44444333344555543 456677899999999999999999887
No 473
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.95 E-value=0.0049 Score=50.56 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566789999999999999999998753
No 474
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.92 E-value=0.0081 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++++|++|+|||+++..+...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3579999999999999999998654
No 475
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.91 E-value=0.011 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCChHHHHHHHh
Q 025346 116 GYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~ 136 (254)
...++.|++|+||||++..+.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998775
No 476
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.90 E-value=0.0011 Score=64.28 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=35.6
Q ss_pred HhhhhhccCCcC--CCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDR--NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++...|.. ....+++++. ...++.+++++|++|+|||||++.+.+-
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl--------~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTF--------TLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceE--------EEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 345556666642 2234555543 4567889999999999999999999875
No 477
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.007 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+++++|+||+||||+...+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 478
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.86 E-value=0.0044 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356678999999999999999999985
No 479
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.82 E-value=0.097 Score=41.51 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
....+.++|||+.... .....+..+|.+++++..+.. .......+.. ++. .+.|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~-l~~--~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVEL-VRH--FGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHH-HHH--cCCCEEEEEeCCCCC
Confidence 4567999999973321 122335789999999998763 3333344333 222 356789999999976
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
.
T Consensus 157 ~ 157 (179)
T cd03110 157 D 157 (179)
T ss_pred c
Confidence 4
No 480
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.043 Score=49.92 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHH--ccCccEEEEEEeCCCC---chhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~iv~vid~~~~---~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
.+..+.++||+|-.......| ..+... ...+|.|+||-.+--+ ...+...-..+.....+..-=-++++|
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm-----~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk 539 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLM-----TSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTK 539 (587)
T ss_pred cCCCEEEEeccccccCChhHH-----HHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEe
Confidence 467899999999665543333 333333 5689999999776333 333332222222211111112467899
Q ss_pred CCCCCh
Q 025346 236 KDLIKP 241 (254)
Q Consensus 236 ~Dl~~~ 241 (254)
+|.++.
T Consensus 540 ~dtv~d 545 (587)
T KOG0781|consen 540 FDTVDD 545 (587)
T ss_pred ccchhh
Confidence 998765
No 481
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0088 Score=55.48 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=35.1
Q ss_pred hhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 85 SLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++...+.+....+.++++ ...++.+++++|++|+|||||++.++|-
T Consensus 325 ~l~~~y~~g~~~l~~l~~--------t~~~g~~talvG~SGaGKSTLl~lL~G~ 370 (559)
T COG4988 325 NLSFRYPDGKPALSDLNL--------TIKAGQLTALVGASGAGKSTLLNLLLGF 370 (559)
T ss_pred ceEEecCCCCcccCCcee--------EecCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 555555555455566554 5567789999999999999999999875
No 482
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.78 E-value=0.0051 Score=54.28 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++-.+.++||+||||||++..+.|-.
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556679999999999999999998754
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.76 E-value=0.0065 Score=47.92 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567789999999999999999999863
No 484
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.76 E-value=0.0068 Score=50.12 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567789999999999999999999763
No 485
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.75 E-value=0.015 Score=49.47 Aligned_cols=62 Identities=26% Similarity=0.339 Sum_probs=41.2
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--cccccCCCCceEEEEEEE---EecCCeeEEEEecCCCcc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LSIVTNKPQTTRHRILGI---CSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--~~~~~~~~~tt~~~~~~~---~~~~~~~~~liDtpG~~~ 175 (254)
+...|.|+|+..+|||.|+|.+++.. +.......+.|....... ...+...+.++||.|+.+
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 34478999999999999999999753 332222334444333221 134567899999999876
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.75 E-value=0.0097 Score=47.61 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
.++..++++|++|+|||||++.+.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456689999999999999999998753
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.75 E-value=0.01 Score=47.77 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556689999999999999999998753
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.01 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++++|++|+||||+++.+.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999999765
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.73 E-value=0.0095 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+++..++++|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999875
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.72 E-value=0.011 Score=47.29 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+|||||++.++.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 445677899999999999999998863
No 491
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0079 Score=49.86 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34566789999999999999999998764
No 492
>PRK08181 transposase; Validated
Probab=95.69 E-value=0.021 Score=48.75 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....++++|++|+|||.|+..+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHH
Confidence 345799999999999999998864
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.67 E-value=0.011 Score=48.53 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34566789999999999999999998763
No 494
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.67 E-value=0.0079 Score=49.51 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34567789999999999999999999764
No 495
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.66 E-value=0.073 Score=47.51 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.....+++++|+.++|||||...+..
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 44567899999999999999776653
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.65 E-value=0.012 Score=48.42 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456678999999999999999999985
No 497
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.65 E-value=0.011 Score=39.36 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.6
Q ss_pred EEEEeCCCCChHHHHHHHhcC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~ 138 (254)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988753
No 498
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.0096 Score=48.17 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
....+-.++++|++|||||||+|-+.+-
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 3445567999999999999999998863
No 499
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.63 E-value=0.056 Score=49.84 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec----CCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG----PEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~----~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
.....|+|+|..++|||||+.+|.+.+- ..++.........+.. +..++.+|-..| +..+..+-...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~----~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g--~~~~~~LLk~~--- 93 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED----PKKGLALEYTYLDVKDEDRDDLARLNVWELDG--DPSHSDLLKFA--- 93 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC----CCCCcccceEEEeeccCcCCcCceeeEEEcCC--CcchHhHhccc---
Confidence 4456899999999999999999876532 2223222222221211 123567776655 32222211110
Q ss_pred HHHHccCccEEEEEEeCCCCc
Q 025346 189 VRSAGINADCIVVLVDACKAP 209 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~ 209 (254)
+...--.--+||+|+|.+.++
T Consensus 94 lt~~~l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 94 LTPENLPNTLVVIVLDLSKPW 114 (472)
T ss_pred CCcccccceEEEEEecCCChH
Confidence 000011235788889998764
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.011 Score=48.41 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++....+++||+|||||||+.++-+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 455666789999999999999988754
Done!