Query 025346
Match_columns 254
No_of_seqs 315 out of 2126
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wf3_A GTP-binding protein; GT 99.8 2.2E-20 7.6E-25 160.7 16.5 133 113-246 5-138 (301)
2 3iev_A GTP-binding protein ERA 99.8 1.6E-19 5.5E-24 155.9 14.4 137 111-249 6-146 (308)
3 3gee_A MNME, tRNA modification 99.8 1.4E-21 4.7E-26 177.9 0.9 222 11-245 120-362 (476)
4 4dhe_A Probable GTP-binding pr 99.8 7.5E-19 2.6E-23 143.9 15.1 135 112-248 26-166 (223)
5 2qu8_A Putative nucleolar GTP- 99.8 1.3E-18 4.6E-23 143.3 15.2 132 111-244 25-160 (228)
6 2dyk_A GTP-binding protein; GT 99.8 5.4E-19 1.9E-23 136.9 11.7 122 116-241 2-123 (161)
7 1mky_A Probable GTP-binding pr 99.8 6E-19 2E-23 159.4 12.2 123 116-240 2-124 (439)
8 2gj8_A MNME, tRNA modification 99.8 1.1E-18 3.9E-23 137.7 12.2 126 114-240 3-129 (172)
9 4dkx_A RAS-related protein RAB 99.8 9.2E-19 3.1E-23 143.7 10.0 121 113-244 11-136 (216)
10 1svi_A GTP-binding protein YSX 99.8 9.2E-18 3.2E-22 134.3 14.9 132 111-247 19-155 (195)
11 3geh_A MNME, tRNA modification 99.8 1.2E-20 4.1E-25 171.1 -2.4 220 11-243 112-347 (462)
12 2nzj_A GTP-binding protein REM 99.8 3.1E-18 1.1E-22 134.4 11.7 122 115-243 4-128 (175)
13 3pqc_A Probable GTP-binding pr 99.8 1.9E-17 6.7E-22 132.0 16.1 133 112-249 20-156 (195)
14 4bas_A ADP-ribosylation factor 99.8 4.7E-18 1.6E-22 136.3 12.2 122 110-242 12-143 (199)
15 2hjg_A GTP-binding protein ENG 99.8 1.9E-18 6.4E-23 156.0 10.9 123 116-241 4-126 (436)
16 1ega_A Protein (GTP-binding pr 99.8 2.8E-18 9.5E-23 147.7 11.4 135 113-250 6-141 (301)
17 3tkl_A RAS-related protein RAB 99.8 6.4E-18 2.2E-22 135.2 12.2 120 114-243 15-138 (196)
18 3q72_A GTP-binding protein RAD 99.7 6.7E-18 2.3E-22 131.4 11.2 119 115-243 2-123 (166)
19 2g6b_A RAS-related protein RAB 99.7 6.2E-18 2.1E-22 133.4 11.0 121 113-242 8-132 (180)
20 1upt_A ARL1, ADP-ribosylation 99.7 1.9E-17 6.4E-22 129.4 13.6 117 113-242 5-124 (171)
21 4dcu_A GTP-binding protein ENG 99.7 3.7E-18 1.3E-22 154.9 10.5 126 113-241 21-146 (456)
22 2bme_A RAB4A, RAS-related prot 99.7 1E-17 3.5E-22 132.9 11.8 119 113-241 8-130 (186)
23 1z0j_A RAB-22, RAS-related pro 99.7 5.3E-18 1.8E-22 132.3 9.9 120 115-243 6-128 (170)
24 1fzq_A ADP-ribosylation factor 99.7 3.9E-17 1.3E-21 129.7 15.0 119 113-244 14-135 (181)
25 3lxx_A GTPase IMAP family memb 99.7 5.4E-18 1.9E-22 140.8 10.0 133 112-245 26-164 (239)
26 2h17_A ADP-ribosylation factor 99.7 1.9E-17 6.4E-22 131.3 12.7 118 111-241 17-137 (181)
27 1zd9_A ADP-ribosylation factor 99.7 2.9E-17 1E-21 131.1 13.6 116 114-241 21-139 (188)
28 2h57_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 131.4 13.3 121 113-244 19-144 (190)
29 1f6b_A SAR1; gtpases, N-termin 99.7 1.9E-17 6.4E-22 133.6 12.3 115 113-240 23-140 (198)
30 2il1_A RAB12; G-protein, GDP, 99.7 9.1E-18 3.1E-22 134.6 10.3 121 112-242 23-147 (192)
31 1z0f_A RAB14, member RAS oncog 99.7 1.9E-17 6.4E-22 130.2 11.9 121 113-242 13-136 (179)
32 1kao_A RAP2A; GTP-binding prot 99.7 1.3E-17 4.4E-22 129.4 10.8 118 115-243 3-125 (167)
33 2y8e_A RAB-protein 6, GH09086P 99.7 7E-18 2.4E-22 132.7 9.4 120 114-243 13-136 (179)
34 1r2q_A RAS-related protein RAB 99.7 7E-18 2.4E-22 131.4 9.3 118 115-241 6-126 (170)
35 1r8s_A ADP-ribosylation factor 99.7 3.6E-17 1.2E-21 127.0 13.2 112 117-241 2-116 (164)
36 1ksh_A ARF-like protein 2; sma 99.7 3.2E-17 1.1E-21 130.3 13.1 121 113-246 16-139 (186)
37 2fh5_B SR-beta, signal recogni 99.7 3.5E-17 1.2E-21 133.1 13.6 123 113-245 5-134 (214)
38 2fg5_A RAB-22B, RAS-related pr 99.7 1.3E-17 4.5E-22 133.6 10.8 119 114-241 22-143 (192)
39 2efe_B Small GTP-binding prote 99.7 2.2E-17 7.7E-22 130.2 12.0 121 113-242 10-133 (181)
40 1m2o_B GTP-binding protein SAR 99.7 4.2E-17 1.4E-21 130.6 13.5 116 113-241 21-139 (190)
41 1u8z_A RAS-related protein RAL 99.7 1.4E-17 4.8E-22 129.3 10.3 117 115-242 4-125 (168)
42 1z06_A RAS-related protein RAB 99.7 2.1E-17 7.1E-22 131.9 11.5 121 113-242 18-143 (189)
43 2fn4_A P23, RAS-related protei 99.7 1.4E-17 4.9E-22 131.1 10.4 122 111-243 5-131 (181)
44 3kkq_A RAS-related protein M-R 99.7 2.3E-17 8E-22 130.6 11.7 121 111-242 14-139 (183)
45 2oil_A CATX-8, RAS-related pro 99.7 1.3E-17 4.5E-22 133.4 10.3 120 113-241 23-145 (193)
46 1ek0_A Protein (GTP-binding pr 99.7 1.5E-17 5E-22 129.6 10.3 117 115-241 3-123 (170)
47 2ew1_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 134.1 11.3 119 114-242 25-147 (201)
48 1zbd_A Rabphilin-3A; G protein 99.7 2.6E-17 8.7E-22 132.7 12.0 119 115-242 8-129 (203)
49 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.5E-17 1.2E-21 128.7 12.4 117 114-240 6-130 (177)
50 3t5g_A GTP-binding protein RHE 99.7 1.3E-17 4.3E-22 131.9 9.8 118 114-242 5-127 (181)
51 1g16_A RAS-related protein SEC 99.7 2.1E-17 7.4E-22 128.8 11.0 116 115-240 3-122 (170)
52 1zj6_A ADP-ribosylation factor 99.7 7.4E-17 2.5E-21 128.4 14.4 116 113-241 14-132 (187)
53 3tw8_B RAS-related protein RAB 99.7 1.1E-17 3.8E-22 131.7 9.5 119 113-242 7-129 (181)
54 1c1y_A RAS-related protein RAP 99.7 1.7E-17 6E-22 128.9 10.4 117 115-242 3-124 (167)
55 3iby_A Ferrous iron transport 99.7 9E-18 3.1E-22 141.2 9.2 119 116-242 2-126 (256)
56 2hup_A RAS-related protein RAB 99.7 1.9E-17 6.6E-22 133.8 10.6 119 113-241 27-149 (201)
57 4dsu_A GTPase KRAS, isoform 2B 99.7 2.7E-17 9.2E-22 130.6 11.2 116 115-241 4-124 (189)
58 2e87_A Hypothetical protein PH 99.7 1.7E-16 5.9E-21 139.5 17.4 134 113-248 165-302 (357)
59 3cph_A RAS-related protein SEC 99.7 3.7E-17 1.3E-21 132.6 12.2 118 113-240 18-139 (213)
60 3oes_A GTPase rhebl1; small GT 99.7 1.5E-17 5E-22 134.3 9.5 122 111-243 20-146 (201)
61 3a1s_A Iron(II) transport prot 99.7 1.8E-17 6.3E-22 139.5 10.4 121 115-241 5-125 (258)
62 3bc1_A RAS-related protein RAB 99.7 5.9E-17 2E-21 128.9 12.7 119 113-241 9-142 (195)
63 2ce2_X GTPase HRAS; signaling 99.7 6.1E-17 2.1E-21 125.3 12.5 115 116-241 4-123 (166)
64 3lxw_A GTPase IMAP family memb 99.7 3.5E-17 1.2E-21 136.9 11.6 129 113-241 19-154 (247)
65 2a9k_A RAS-related protein RAL 99.7 2.7E-17 9.1E-22 130.2 10.4 119 112-241 15-138 (187)
66 2b6h_A ADP-ribosylation factor 99.7 5.5E-17 1.9E-21 130.2 12.3 116 113-241 27-145 (192)
67 3r7w_A Gtpase1, GTP-binding pr 99.7 3.9E-17 1.3E-21 140.9 12.2 122 115-241 3-130 (307)
68 1h65_A Chloroplast outer envel 99.7 7E-17 2.4E-21 136.7 13.5 128 113-242 37-170 (270)
69 1moz_A ARL1, ADP-ribosylation 99.7 5.8E-17 2E-21 128.2 12.1 116 113-241 16-134 (183)
70 2gf9_A RAS-related protein RAB 99.7 2.3E-17 7.8E-22 131.7 9.8 119 115-242 22-143 (189)
71 2bov_A RAla, RAS-related prote 99.7 4.7E-17 1.6E-21 131.1 11.7 120 112-242 11-135 (206)
72 2a5j_A RAS-related protein RAB 99.7 2.6E-17 8.8E-22 131.7 10.0 120 113-241 19-141 (191)
73 3llu_A RAS-related GTP-binding 99.7 9.5E-17 3.3E-21 129.0 13.4 125 111-242 16-145 (196)
74 2atv_A RERG, RAS-like estrogen 99.7 3.3E-17 1.1E-21 131.6 10.6 117 113-241 26-147 (196)
75 2erx_A GTP-binding protein DI- 99.7 3.2E-17 1.1E-21 127.9 10.0 118 115-243 3-126 (172)
76 2wjg_A FEOB, ferrous iron tran 99.7 2.9E-17 9.9E-22 130.6 9.9 121 113-241 5-127 (188)
77 2j1l_A RHO-related GTP-binding 99.7 4.7E-17 1.6E-21 132.8 11.3 120 113-244 32-156 (214)
78 2p5s_A RAS and EF-hand domain 99.7 3.2E-17 1.1E-21 132.0 10.1 118 113-239 26-146 (199)
79 2lkc_A Translation initiation 99.7 2.4E-17 8E-22 129.8 9.0 117 112-241 5-122 (178)
80 2fu5_C RAS-related protein RAB 99.7 7.4E-18 2.5E-22 133.5 6.0 117 115-241 8-128 (183)
81 2iwr_A Centaurin gamma 1; ANK 99.7 1.7E-16 5.7E-21 125.1 13.6 110 113-239 5-121 (178)
82 1z08_A RAS-related protein RAB 99.7 1.9E-17 6.4E-22 129.3 7.9 118 114-241 5-126 (170)
83 4gzl_A RAS-related C3 botulinu 99.7 4.3E-17 1.5E-21 132.0 10.3 120 113-244 28-152 (204)
84 3dz8_A RAS-related protein RAB 99.7 2.1E-17 7.1E-22 132.2 8.3 120 113-241 21-143 (191)
85 2atx_A Small GTP binding prote 99.7 4.7E-17 1.6E-21 130.2 10.2 117 114-242 17-138 (194)
86 2bcg_Y Protein YP2, GTP-bindin 99.7 4.2E-17 1.4E-21 131.9 10.0 119 114-242 7-129 (206)
87 3con_A GTPase NRAS; structural 99.7 8.3E-17 2.8E-21 128.3 11.6 117 113-240 19-140 (190)
88 3ihw_A Centg3; RAS, centaurin, 99.7 1.6E-16 5.6E-21 126.6 13.2 112 111-239 16-132 (184)
89 2gco_A H9, RHO-related GTP-bin 99.7 4.4E-17 1.5E-21 131.5 10.0 120 114-243 24-146 (201)
90 2wji_A Ferrous iron transport 99.7 9.9E-17 3.4E-21 125.4 11.6 119 115-241 3-123 (165)
91 2fv8_A H6, RHO-related GTP-bin 99.7 5.1E-17 1.8E-21 131.7 10.3 119 115-244 25-147 (207)
92 2o52_A RAS-related protein RAB 99.7 2E-17 6.7E-22 133.6 7.8 120 113-242 23-146 (200)
93 3i8s_A Ferrous iron transport 99.7 2.5E-17 8.6E-22 139.8 8.6 121 115-241 3-127 (274)
94 4djt_A GTP-binding nuclear pro 99.7 5.8E-17 2E-21 132.2 10.5 122 113-244 9-135 (218)
95 3reg_A RHO-like small GTPase; 99.7 1.8E-17 6.2E-22 132.8 7.3 117 113-240 21-141 (194)
96 3cbq_A GTP-binding protein REM 99.7 6.7E-17 2.3E-21 130.1 10.6 122 112-242 20-146 (195)
97 2xtp_A GTPase IMAP family memb 99.7 2.2E-16 7.6E-21 132.6 14.2 130 111-241 18-154 (260)
98 2x77_A ADP-ribosylation factor 99.7 6.5E-17 2.2E-21 128.9 10.3 116 113-241 20-138 (189)
99 1ky3_A GTP-binding protein YPT 99.7 5.2E-17 1.8E-21 128.0 9.6 119 113-241 6-133 (182)
100 1vg8_A RAS-related protein RAB 99.7 6E-17 2E-21 130.7 10.0 119 113-241 6-132 (207)
101 2hjg_A GTP-binding protein ENG 99.7 2.8E-17 9.4E-22 148.4 8.9 129 113-243 173-303 (436)
102 1xzp_A Probable tRNA modificat 99.7 1.3E-17 4.6E-22 151.7 6.7 122 115-241 243-365 (482)
103 1nrj_B SR-beta, signal recogni 99.7 7.9E-17 2.7E-21 131.4 10.7 123 112-245 9-139 (218)
104 1z2a_A RAS-related protein RAB 99.7 9E-17 3.1E-21 125.0 10.5 118 114-242 4-125 (168)
105 2f7s_A C25KG, RAS-related prot 99.7 6.2E-17 2.1E-21 131.9 9.9 119 114-242 24-157 (217)
106 1mh1_A RAC1; GTP-binding, GTPa 99.7 5E-17 1.7E-21 128.6 9.1 117 114-242 4-125 (186)
107 3c5c_A RAS-like protein 12; GD 99.7 3.8E-17 1.3E-21 130.5 8.4 117 113-241 19-142 (187)
108 2gf0_A GTP-binding protein DI- 99.7 1.2E-16 4.1E-21 128.0 11.4 118 113-241 6-129 (199)
109 2q3h_A RAS homolog gene family 99.7 1E-16 3.4E-21 129.0 10.6 119 111-241 16-139 (201)
110 3clv_A RAB5 protein, putative; 99.7 2.9E-16 9.8E-21 125.8 13.2 114 113-238 5-159 (208)
111 2hxs_A RAB-26, RAS-related pro 99.7 3E-17 1E-21 129.1 7.2 119 113-241 4-130 (178)
112 3q3j_B RHO-related GTP-binding 99.7 2.3E-16 7.8E-21 128.8 12.7 118 111-240 23-145 (214)
113 1x3s_A RAS-related protein RAB 99.7 1.7E-16 5.8E-21 126.6 11.7 116 115-240 15-135 (195)
114 2yc2_C IFT27, small RAB-relate 99.7 4.9E-17 1.7E-21 131.1 8.5 118 114-240 19-146 (208)
115 3gj0_A GTP-binding nuclear pro 99.7 1.1E-16 3.9E-21 130.9 10.6 121 111-241 11-134 (221)
116 3q85_A GTP-binding protein REM 99.7 9E-17 3.1E-21 125.3 9.6 118 116-242 3-125 (169)
117 2ged_A SR-beta, signal recogni 99.7 1.1E-16 3.7E-21 127.9 10.0 127 113-251 46-181 (193)
118 3t5d_A Septin-7; GTP-binding p 99.7 6.4E-16 2.2E-20 131.0 15.2 132 115-249 8-167 (274)
119 3def_A T7I23.11 protein; chlor 99.7 4.6E-16 1.6E-20 131.1 13.5 127 113-241 34-166 (262)
120 1m7b_A RND3/RHOE small GTP-bin 99.7 1.6E-16 5.6E-21 126.2 10.0 116 113-240 5-125 (184)
121 2j0v_A RAC-like GTP-binding pr 99.7 1.6E-16 5.3E-21 129.1 10.0 119 113-243 7-130 (212)
122 3t1o_A Gliding protein MGLA; G 99.7 3.5E-16 1.2E-20 124.8 11.8 124 113-246 12-155 (198)
123 3k53_A Ferrous iron transport 99.7 1.5E-16 5E-21 134.8 10.1 122 115-241 3-124 (271)
124 3cpj_B GTP-binding protein YPT 99.7 5.3E-17 1.8E-21 133.2 6.9 119 114-242 12-134 (223)
125 3l0i_B RAS-related protein RAB 99.7 7.1E-18 2.4E-22 135.9 0.7 120 113-242 31-154 (199)
126 3b1v_A Ferrous iron uptake tra 99.7 2.6E-16 8.9E-21 133.4 10.3 120 115-241 3-122 (272)
127 2g3y_A GTP-binding protein GEM 99.7 5E-16 1.7E-20 126.9 11.6 121 114-242 36-161 (211)
128 4dcu_A GTP-binding protein ENG 99.7 1.8E-16 6.3E-21 143.7 9.8 128 113-242 193-322 (456)
129 3o47_A ADP-ribosylation factor 99.7 7.1E-16 2.4E-20 134.2 12.7 121 113-246 163-286 (329)
130 1gwn_A RHO-related GTP-binding 99.7 3.3E-16 1.1E-20 127.2 9.8 115 114-240 27-146 (205)
131 3bwd_D RAC-like GTP-binding pr 99.7 5.1E-17 1.7E-21 128.3 4.5 119 113-243 6-129 (182)
132 2zej_A Dardarin, leucine-rich 99.6 9.3E-16 3.2E-20 122.0 10.6 120 116-245 3-131 (184)
133 3qq5_A Small GTP-binding prote 99.6 1.4E-16 4.9E-21 142.6 5.8 127 112-244 31-158 (423)
134 2aka_B Dynamin-1; fusion prote 99.6 4.1E-15 1.4E-19 127.0 14.4 129 113-243 24-209 (299)
135 1mky_A Probable GTP-binding pr 99.6 6.4E-16 2.2E-20 139.5 9.5 128 114-243 179-309 (439)
136 3r7w_B Gtpase2, GTP-binding pr 99.6 1.5E-15 5.2E-20 131.0 11.1 119 117-242 1-122 (331)
137 3lvq_E ARF-GAP with SH3 domain 99.6 2.4E-15 8.1E-20 137.7 12.5 115 114-241 321-438 (497)
138 1lnz_A SPO0B-associated GTP-bi 99.6 4.6E-16 1.6E-20 135.9 7.2 123 116-243 159-291 (342)
139 2cxx_A Probable GTP-binding pr 99.6 4.3E-15 1.5E-19 117.9 12.0 122 116-242 2-138 (190)
140 2qtf_A Protein HFLX, GTP-bindi 99.6 3.5E-15 1.2E-19 131.4 12.5 125 116-242 180-308 (364)
141 2qpt_A EH domain-containing pr 99.6 4.1E-15 1.4E-19 137.6 12.7 136 113-251 63-243 (550)
142 1jwy_B Dynamin A GTPase domain 99.6 6.7E-15 2.3E-19 126.7 13.0 129 113-243 22-215 (315)
143 3th5_A RAS-related C3 botulinu 99.4 7.3E-17 2.5E-21 130.3 0.0 118 113-242 28-150 (204)
144 2wkq_A NPH1-1, RAS-related C3 99.6 3.8E-15 1.3E-19 128.7 10.8 118 113-242 153-275 (332)
145 2cjw_A GTP-binding protein GEM 99.6 1.5E-15 5.1E-20 121.9 7.1 119 115-241 6-129 (192)
146 4a9a_A Ribosome-interacting GT 99.6 3E-15 1E-19 131.9 9.5 121 116-239 73-195 (376)
147 3j2k_7 ERF3, eukaryotic polype 99.6 2.1E-14 7.1E-19 129.6 15.1 117 112-240 14-169 (439)
148 1wb1_A Translation elongation 99.6 1.1E-14 3.6E-19 132.9 12.1 122 114-246 18-145 (482)
149 3izq_1 HBS1P, elongation facto 99.6 7.9E-15 2.7E-19 137.2 10.4 118 112-240 164-319 (611)
150 3tr5_A RF-3, peptide chain rel 99.6 6.8E-15 2.3E-19 135.4 9.5 117 114-241 12-149 (528)
151 3sjy_A Translation initiation 99.5 2.1E-14 7.3E-19 128.2 11.1 129 112-251 5-154 (403)
152 3p26_A Elongation factor 1 alp 99.5 1.9E-14 6.6E-19 131.3 11.0 118 113-240 31-185 (483)
153 1zun_B Sulfate adenylate trans 99.5 5.4E-14 1.9E-18 126.7 13.6 115 115-240 24-171 (434)
154 3t34_A Dynamin-related protein 99.5 6.6E-14 2.3E-18 123.1 13.7 129 114-243 33-220 (360)
155 2f9l_A RAB11B, member RAS onco 99.5 6.3E-14 2.2E-18 112.7 12.1 117 115-241 5-125 (199)
156 1d2e_A Elongation factor TU (E 99.5 1.1E-13 3.7E-18 123.4 13.1 114 115-240 3-133 (397)
157 2c78_A Elongation factor TU-A; 99.5 3.8E-14 1.3E-18 126.6 10.1 116 113-240 9-142 (405)
158 2qag_A Septin-2, protein NEDD5 99.5 8.6E-14 2.9E-18 122.5 12.0 129 115-246 37-194 (361)
159 1pui_A ENGB, probable GTP-bind 99.5 2E-13 7E-18 110.3 12.9 128 111-243 22-154 (210)
160 2x2e_A Dynamin-1; nitration, h 99.5 1.1E-13 3.6E-18 121.5 11.9 129 113-243 29-214 (353)
161 2h5e_A Peptide chain release f 99.5 1.4E-13 4.9E-18 126.7 13.2 118 114-242 12-150 (529)
162 1jny_A EF-1-alpha, elongation 99.5 6.7E-14 2.3E-18 126.1 9.9 117 114-240 5-158 (435)
163 1wxq_A GTP-binding protein; st 99.5 6.7E-14 2.3E-18 124.6 9.5 89 117-208 2-114 (397)
164 1f60_A Elongation factor EEF1A 99.5 3.3E-14 1.1E-18 128.9 7.5 115 114-240 6-159 (458)
165 2elf_A Protein translation elo 99.5 1.1E-13 3.8E-18 122.1 10.4 108 117-246 23-132 (370)
166 1kk1_A EIF2gamma; initiation o 99.5 2.6E-13 8.9E-18 121.4 12.5 121 113-244 8-155 (410)
167 2j69_A Bacterial dynamin-like 99.5 1.9E-13 6.6E-18 129.7 12.2 121 114-242 68-246 (695)
168 1oix_A RAS-related protein RAB 99.5 2.2E-13 7.5E-18 109.0 10.7 117 115-241 29-149 (191)
169 3c5h_A Glucocorticoid receptor 99.5 1.3E-13 4.4E-18 115.6 9.6 137 111-247 15-219 (255)
170 3izy_P Translation initiation 99.5 3.8E-15 1.3E-19 136.9 -0.2 116 113-240 2-118 (537)
171 1s0u_A EIF-2-gamma, translatio 99.5 5.3E-13 1.8E-17 119.3 12.6 119 113-242 6-151 (408)
172 3dpu_A RAB family protein; roc 99.4 1.9E-13 6.3E-18 126.3 9.3 119 112-243 38-167 (535)
173 3mca_A HBS1, elongation factor 99.4 7.8E-15 2.7E-19 136.8 -0.1 118 112-240 174-329 (592)
174 1zo1_I IF2, translation initia 99.4 1.7E-14 5.8E-19 131.5 2.1 115 113-240 2-117 (501)
175 2xex_A Elongation factor G; GT 99.4 4.5E-13 1.5E-17 127.1 11.4 117 113-241 8-142 (693)
176 1dar_A EF-G, elongation factor 99.4 5.7E-13 1.9E-17 126.4 11.4 117 113-241 10-144 (691)
177 1r5b_A Eukaryotic peptide chai 99.4 4.6E-13 1.6E-17 121.7 10.0 115 114-240 42-195 (467)
178 2rdo_7 EF-G, elongation factor 99.4 2.4E-12 8.2E-17 122.3 14.3 117 113-241 8-149 (704)
179 3avx_A Elongation factor TS, e 99.4 2E-12 6.9E-17 126.5 12.0 117 113-241 294-427 (1289)
180 3cb4_D GTP-binding protein LEP 99.4 1.2E-12 4.2E-17 121.8 9.9 114 115-241 4-138 (599)
181 2ywe_A GTP-binding protein LEP 99.4 1.2E-12 4.1E-17 121.8 9.7 115 115-241 6-140 (600)
182 1g7s_A Translation initiation 99.4 5.9E-13 2E-17 124.0 6.3 114 114-240 4-136 (594)
183 3zvr_A Dynamin-1; hydrolase, D 99.3 1.3E-11 4.5E-16 117.1 15.0 127 114-243 50-234 (772)
184 3vqt_A RF-3, peptide chain rel 99.3 3.5E-12 1.2E-16 117.9 10.6 117 114-241 30-167 (548)
185 2qag_C Septin-7; cell cycle, c 99.3 2.2E-11 7.7E-16 108.8 14.3 130 115-248 31-189 (418)
186 2dy1_A Elongation factor G; tr 99.3 1.1E-11 3.8E-16 117.1 12.3 116 113-239 7-139 (665)
187 1udx_A The GTP-binding protein 99.3 6.2E-12 2.1E-16 112.3 9.7 128 115-247 157-290 (416)
188 1n0u_A EF-2, elongation factor 99.3 3.2E-12 1.1E-16 123.6 8.2 114 114-239 18-163 (842)
189 1jal_A YCHF protein; nucleotid 99.2 5.1E-12 1.7E-16 110.7 5.6 90 115-207 2-108 (363)
190 3p32_A Probable GTPase RV1496/ 99.2 5.7E-12 2E-16 110.6 5.8 115 113-245 77-236 (355)
191 3h2y_A GTPase family protein; 99.2 2.9E-12 9.9E-17 113.0 2.8 128 115-252 160-299 (368)
192 3ec1_A YQEH GTPase; atnos1, at 99.2 1.5E-12 5.2E-17 114.8 0.5 126 115-250 162-298 (369)
193 2p67_A LAO/AO transport system 99.2 1.8E-11 6.1E-16 106.9 7.1 115 113-245 54-213 (341)
194 2www_A Methylmalonic aciduria 99.2 8.2E-12 2.8E-16 109.3 4.7 112 113-242 72-228 (349)
195 2qnr_A Septin-2, protein NEDD5 99.2 8.3E-11 2.8E-15 100.9 10.7 128 115-245 18-174 (301)
196 2qag_B Septin-6, protein NEDD5 99.2 3.1E-10 1.1E-14 101.2 14.0 137 113-252 38-202 (427)
197 4fn5_A EF-G 1, elongation fact 99.2 9.5E-11 3.2E-15 111.6 10.0 118 113-241 11-152 (709)
198 3j25_A Tetracycline resistance 99.2 1.6E-11 5.5E-16 115.5 4.6 116 115-241 2-134 (638)
199 3sop_A Neuronal-specific septi 99.1 6.8E-10 2.3E-14 93.7 11.4 133 116-251 3-165 (270)
200 2ohf_A Protein OLA1, GTP-bindi 99.1 8.8E-11 3E-15 103.9 5.9 91 114-207 21-128 (396)
201 4fid_A G protein alpha subunit 99.1 3E-10 1E-14 98.6 8.8 78 155-241 153-243 (340)
202 1yrb_A ATP(GTP)binding protein 99.0 2.8E-10 9.5E-15 95.0 6.0 128 113-244 12-189 (262)
203 2dby_A GTP-binding protein; GD 99.0 1.2E-10 4.1E-15 102.4 3.7 87 116-207 2-111 (368)
204 2wsm_A Hydrogenase expression/ 99.0 6.2E-10 2.1E-14 90.5 6.0 110 114-241 29-169 (221)
205 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 6E-10 2E-14 98.6 6.2 93 113-207 18-127 (392)
206 3ohm_A Guanine nucleotide-bind 98.9 1.2E-09 4E-14 94.5 7.2 79 154-241 158-249 (327)
207 2qm8_A GTPase/ATPase; G protei 98.9 1.1E-09 3.9E-14 95.2 6.9 112 112-241 52-208 (337)
208 1cip_A Protein (guanine nucleo 98.9 1.6E-09 5.5E-14 94.8 7.2 75 156-239 186-273 (353)
209 1puj_A YLQF, conserved hypothe 98.7 1.7E-08 5.7E-13 85.7 7.2 62 113-177 118-179 (282)
210 2j37_W Signal recognition part 98.7 2.2E-08 7.5E-13 91.3 8.4 120 114-241 100-255 (504)
211 1f5n_A Interferon-induced guan 98.6 6.7E-08 2.3E-12 89.6 7.6 62 114-177 37-105 (592)
212 2v3c_C SRP54, signal recogniti 98.5 2.3E-07 7.9E-12 83.2 7.5 117 115-241 99-253 (432)
213 1azs_C GS-alpha; complex (lyas 98.5 1.6E-07 5.4E-12 83.3 6.3 76 156-240 210-298 (402)
214 3cnl_A YLQF, putative uncharac 98.5 5.2E-08 1.8E-12 81.7 2.9 59 116-177 100-158 (262)
215 1zcb_A G alpha I/13; GTP-bindi 98.5 1.2E-07 4.2E-12 83.1 4.9 76 155-239 193-281 (362)
216 2hf9_A Probable hydrogenase ni 98.4 2.8E-07 9.6E-12 74.8 6.5 26 114-139 37-62 (226)
217 3szr_A Interferon-induced GTP- 98.4 2.8E-06 9.4E-11 79.5 11.7 77 163-242 147-230 (608)
218 1tq4_A IIGP1, interferon-induc 98.3 2E-06 7E-11 76.5 10.1 116 114-239 68-188 (413)
219 1u0l_A Probable GTPase ENGC; p 98.3 1.6E-07 5.3E-12 80.4 2.8 99 130-244 32-133 (301)
220 3dm5_A SRP54, signal recogniti 98.3 3.4E-06 1.2E-10 75.6 11.4 122 114-242 99-255 (443)
221 2xtz_A Guanine nucleotide-bind 98.3 6.8E-07 2.3E-11 78.1 4.9 71 161-240 181-264 (354)
222 3kl4_A SRP54, signal recogniti 98.1 9E-06 3.1E-10 72.7 8.7 121 114-241 96-253 (433)
223 3q5d_A Atlastin-1; G protein, 97.9 4E-05 1.4E-09 68.8 8.6 64 113-177 65-154 (447)
224 1j8m_F SRP54, signal recogniti 97.9 5.2E-05 1.8E-09 64.5 8.7 119 115-241 98-254 (297)
225 2xxa_A Signal recognition part 97.8 5.4E-05 1.9E-09 67.8 8.5 120 114-241 99-255 (433)
226 2px0_A Flagellar biosynthesis 97.6 0.00022 7.7E-09 60.5 9.5 119 114-241 104-254 (296)
227 1puj_A YLQF, conserved hypothe 97.6 0.00014 4.7E-09 61.4 6.9 61 187-251 15-75 (282)
228 1rj9_A FTSY, signal recognitio 97.6 0.00085 2.9E-08 57.2 11.8 123 114-240 101-261 (304)
229 3e70_C DPA, signal recognition 97.5 0.00019 6.6E-09 61.8 7.6 121 113-240 127-282 (328)
230 2yhs_A FTSY, cell division pro 97.5 0.00057 2E-08 61.9 9.9 121 113-239 291-451 (503)
231 1zu4_A FTSY; GTPase, signal re 97.4 0.00096 3.3E-08 57.3 10.7 74 161-241 190-269 (320)
232 2yv5_A YJEQ protein; hydrolase 97.3 0.00037 1.3E-08 59.3 6.0 49 192-243 76-127 (302)
233 1t9h_A YLOQ, probable GTPase E 97.2 8.2E-05 2.8E-09 63.6 1.7 58 114-175 172-236 (307)
234 3cnl_A YLQF, putative uncharac 97.2 0.00018 6E-09 60.1 3.3 59 187-251 13-71 (262)
235 3l82_B F-box only protein 4; T 97.2 0.00072 2.5E-08 54.4 6.4 57 185-241 115-178 (227)
236 1vma_A Cell division protein F 97.1 0.0018 6E-08 55.3 8.8 24 114-137 103-126 (306)
237 2yv5_A YJEQ protein; hydrolase 97.1 0.00078 2.7E-08 57.3 6.1 25 114-139 164-188 (302)
238 2ffh_A Protein (FFH); SRP54, s 97.1 0.00043 1.5E-08 61.7 4.6 119 114-240 97-251 (425)
239 2rcn_A Probable GTPase ENGC; Y 97.0 0.00047 1.6E-08 60.1 4.0 27 114-140 214-240 (358)
240 4dzz_A Plasmid partitioning pr 96.9 0.0012 4E-08 52.2 5.5 68 162-240 75-144 (206)
241 3h2y_A GTPase family protein; 96.9 0.00078 2.7E-08 59.0 4.6 54 185-242 59-112 (368)
242 3ney_A 55 kDa erythrocyte memb 96.8 0.0006 2E-08 54.4 2.9 28 111-138 15-42 (197)
243 1u0l_A Probable GTPase ENGC; p 96.8 0.001 3.6E-08 56.4 4.3 26 115-140 169-194 (301)
244 1t9h_A YLOQ, probable GTPase E 96.7 0.0024 8E-08 54.5 5.9 59 192-251 83-146 (307)
245 3ec1_A YQEH GTPase; atnos1, at 96.7 0.00097 3.3E-08 58.3 3.5 51 187-241 63-113 (369)
246 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0088 3E-07 53.5 9.6 65 113-177 65-154 (457)
247 1ls1_A Signal recognition part 96.6 0.016 5.5E-07 48.9 10.7 119 114-240 97-251 (295)
248 1kgd_A CASK, peripheral plasma 96.6 0.0012 4E-08 51.5 3.4 25 114-138 4-28 (180)
249 1bif_A 6-phosphofructo-2-kinas 96.6 0.00023 7.8E-09 64.3 -1.0 101 114-220 38-145 (469)
250 1lvg_A Guanylate kinase, GMP k 96.6 0.001 3.4E-08 52.9 2.6 23 115-137 4-26 (198)
251 1ex7_A Guanylate kinase; subst 96.6 0.00037 1.3E-08 55.1 0.0 36 117-152 3-39 (186)
252 3end_A Light-independent proto 96.5 0.014 4.8E-07 49.2 9.4 67 162-238 156-225 (307)
253 1z6g_A Guanylate kinase; struc 96.4 0.0015 5.1E-08 52.7 2.9 27 112-138 20-46 (218)
254 3qf4_B Uncharacterized ABC tra 96.4 0.00049 1.7E-08 64.1 -0.0 50 81-138 355-404 (598)
255 1zp6_A Hypothetical protein AT 96.3 0.0028 9.6E-08 49.4 4.0 26 113-138 7-32 (191)
256 1mv5_A LMRA, multidrug resista 96.3 0.0012 4.2E-08 54.2 1.8 28 111-138 24-51 (243)
257 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.7E-08 50.5 3.3 25 114-138 6-30 (205)
258 1znw_A Guanylate kinase, GMP k 96.3 0.0022 7.5E-08 51.1 3.2 27 112-138 17-43 (207)
259 3gfo_A Cobalt import ATP-bindi 96.3 0.00069 2.4E-08 56.9 0.2 28 111-138 30-57 (275)
260 1s96_A Guanylate kinase, GMP k 96.3 0.0023 7.8E-08 51.8 3.2 26 113-138 14-39 (219)
261 1ye8_A Protein THEP1, hypothet 96.3 0.0021 7.3E-08 50.2 2.9 22 117-138 2-23 (178)
262 3nh6_A ATP-binding cassette SU 96.2 0.0006 2.1E-08 58.2 -0.6 50 81-138 54-103 (306)
263 3c8u_A Fructokinase; YP_612366 96.2 0.0027 9.4E-08 50.6 3.2 26 113-138 20-45 (208)
264 3a00_A Guanylate kinase, GMP k 96.2 0.0023 7.8E-08 50.1 2.6 22 117-138 3-24 (186)
265 3tau_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 50.1 3.4 25 114-138 7-31 (208)
266 3tif_A Uncharacterized ABC tra 96.1 0.0036 1.2E-07 51.1 3.7 28 111-138 27-54 (235)
267 4b4t_K 26S protease regulatory 96.0 0.042 1.4E-06 48.9 10.4 25 113-137 204-228 (428)
268 3asz_A Uridine kinase; cytidin 96.0 0.0039 1.3E-07 49.5 3.2 26 113-138 4-29 (211)
269 4b4t_L 26S protease subunit RP 96.0 0.053 1.8E-06 48.4 10.7 27 112-138 212-238 (437)
270 2j41_A Guanylate kinase; GMP, 96.0 0.0043 1.5E-07 48.9 3.4 25 114-138 5-29 (207)
271 4gp7_A Metallophosphoesterase; 95.9 0.0044 1.5E-07 47.8 3.2 23 114-136 8-30 (171)
272 2pcj_A ABC transporter, lipopr 95.9 0.0048 1.7E-07 50.0 3.6 27 112-138 27-53 (224)
273 2cbz_A Multidrug resistance-as 95.9 0.0052 1.8E-07 50.2 3.7 29 111-139 27-55 (237)
274 3l2o_B F-box only protein 4; s 95.9 0.0062 2.1E-07 51.4 4.0 55 187-241 202-263 (312)
275 3h4m_A Proteasome-activating n 95.9 0.034 1.2E-06 46.0 8.7 24 114-137 50-73 (285)
276 1htw_A HI0065; nucleotide-bind 95.9 0.0056 1.9E-07 46.8 3.5 27 113-139 31-57 (158)
277 1b0u_A Histidine permease; ABC 95.8 0.0056 1.9E-07 50.8 3.6 28 111-138 28-55 (262)
278 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.12 4E-06 42.0 11.7 23 115-137 39-61 (262)
279 1knq_A Gluconate kinase; ALFA/ 95.8 0.0064 2.2E-07 46.7 3.7 25 113-137 6-30 (175)
280 2qor_A Guanylate kinase; phosp 95.8 0.0051 1.7E-07 48.7 3.1 24 114-137 11-34 (204)
281 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.092 3.1E-06 44.7 11.2 23 115-137 45-67 (322)
282 1d2n_A N-ethylmaleimide-sensit 95.8 0.087 3E-06 43.4 10.8 26 113-138 62-87 (272)
283 2ff7_A Alpha-hemolysin translo 95.8 0.0061 2.1E-07 50.2 3.5 27 112-138 32-58 (247)
284 2ghi_A Transport protein; mult 95.8 0.0065 2.2E-07 50.4 3.7 28 111-138 42-69 (260)
285 4g1u_C Hemin import ATP-bindin 95.7 0.0061 2.1E-07 50.8 3.5 28 111-138 33-60 (266)
286 1g6h_A High-affinity branched- 95.7 0.0063 2.2E-07 50.4 3.5 28 111-138 29-56 (257)
287 2pze_A Cystic fibrosis transme 95.7 0.0064 2.2E-07 49.4 3.5 27 112-138 31-57 (229)
288 2v9p_A Replication protein E1; 95.7 0.0064 2.2E-07 51.7 3.6 27 111-137 122-148 (305)
289 2olj_A Amino acid ABC transpor 95.7 0.0068 2.3E-07 50.4 3.6 28 111-138 46-73 (263)
290 4eun_A Thermoresistant glucoki 95.7 0.006 2.1E-07 48.2 3.2 25 113-137 27-51 (200)
291 2eyu_A Twitching motility prot 95.7 0.006 2E-07 50.7 3.3 26 113-138 23-48 (261)
292 1vpl_A ABC transporter, ATP-bi 95.7 0.0071 2.4E-07 50.1 3.6 28 111-138 37-64 (256)
293 2ixe_A Antigen peptide transpo 95.7 0.0072 2.5E-07 50.5 3.7 28 111-138 41-68 (271)
294 1sgw_A Putative ABC transporte 95.7 0.0062 2.1E-07 49.1 3.1 26 113-138 33-58 (214)
295 2zu0_C Probable ATP-dependent 95.7 0.0074 2.5E-07 50.3 3.7 28 111-138 42-69 (267)
296 1ji0_A ABC transporter; ATP bi 95.6 0.0073 2.5E-07 49.4 3.5 27 112-138 29-55 (240)
297 3t15_A Ribulose bisphosphate c 95.6 0.038 1.3E-06 46.4 8.0 23 115-137 36-58 (293)
298 1kag_A SKI, shikimate kinase I 95.6 0.0062 2.1E-07 46.6 2.8 22 116-137 5-26 (173)
299 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0079 2.7E-07 49.6 3.6 27 112-138 26-52 (250)
300 2qi9_C Vitamin B12 import ATP- 95.6 0.0077 2.6E-07 49.7 3.5 27 112-138 23-49 (249)
301 4b4t_M 26S protease regulatory 95.6 0.062 2.1E-06 47.9 9.6 26 113-138 213-238 (434)
302 2yz2_A Putative ABC transporte 95.6 0.0082 2.8E-07 49.9 3.7 28 111-138 29-56 (266)
303 2onk_A Molybdate/tungstate ABC 95.6 0.0084 2.9E-07 49.1 3.6 23 116-138 25-47 (240)
304 2ihy_A ABC transporter, ATP-bi 95.5 0.0081 2.8E-07 50.4 3.5 27 112-138 44-70 (279)
305 2qt1_A Nicotinamide riboside k 95.5 0.012 4E-07 46.6 4.3 28 111-138 17-44 (207)
306 3uie_A Adenylyl-sulfate kinase 95.5 0.0079 2.7E-07 47.5 3.2 26 113-138 23-48 (200)
307 1z47_A CYSA, putative ABC-tran 95.5 0.004 1.4E-07 54.2 1.5 28 112-139 38-65 (355)
308 2bbw_A Adenylate kinase 4, AK4 95.5 0.0089 3E-07 48.8 3.6 22 115-136 27-48 (246)
309 3lnc_A Guanylate kinase, GMP k 95.5 0.0056 1.9E-07 49.5 2.3 26 113-138 25-51 (231)
310 3gd7_A Fusion complex of cysti 95.5 0.0047 1.6E-07 54.4 1.9 49 82-138 21-70 (390)
311 4b4t_J 26S protease regulatory 95.5 0.13 4.5E-06 45.2 11.1 26 113-138 180-205 (405)
312 3aez_A Pantothenate kinase; tr 95.5 0.0085 2.9E-07 51.1 3.4 26 112-137 87-112 (312)
313 2nq2_C Hypothetical ABC transp 95.5 0.0089 3.1E-07 49.4 3.4 27 112-138 28-54 (253)
314 2bbs_A Cystic fibrosis transme 95.4 0.01 3.5E-07 50.1 3.8 29 111-139 60-88 (290)
315 4b4t_H 26S protease regulatory 95.4 0.13 4.5E-06 46.1 11.0 26 113-138 241-266 (467)
316 3lw7_A Adenylate kinase relate 95.4 0.0089 3E-07 45.4 3.1 20 116-135 2-21 (179)
317 2f6r_A COA synthase, bifunctio 95.4 0.013 4.3E-07 49.1 4.3 23 114-136 74-96 (281)
318 3vaa_A Shikimate kinase, SK; s 95.4 0.01 3.5E-07 46.8 3.5 25 113-137 23-47 (199)
319 2jeo_A Uridine-cytidine kinase 95.4 0.0092 3.1E-07 48.8 3.3 27 111-137 21-47 (245)
320 3b85_A Phosphate starvation-in 95.4 0.0078 2.7E-07 48.2 2.7 24 115-138 22-45 (208)
321 3kb2_A SPBC2 prophage-derived 95.4 0.0099 3.4E-07 45.2 3.2 21 117-137 3-23 (173)
322 3ec2_A DNA replication protein 95.3 0.0079 2.7E-07 46.5 2.6 24 115-138 38-61 (180)
323 2bdt_A BH3686; alpha-beta prot 95.3 0.0089 3E-07 46.6 2.9 21 117-137 4-24 (189)
324 1ly1_A Polynucleotide kinase; 95.3 0.011 3.7E-07 45.3 3.4 22 116-137 3-24 (181)
325 3fvq_A Fe(3+) IONS import ATP- 95.3 0.012 4E-07 51.2 3.8 29 111-139 26-54 (359)
326 1y63_A LMAJ004144AAA protein; 95.3 0.014 4.7E-07 45.4 3.9 26 113-138 8-33 (184)
327 2chg_A Replication factor C sm 95.3 0.064 2.2E-06 41.9 8.0 21 117-137 40-60 (226)
328 1qhx_A CPT, protein (chloramph 95.3 0.012 4.1E-07 45.1 3.5 22 116-137 4-25 (178)
329 4a74_A DNA repair and recombin 95.3 0.011 3.6E-07 47.3 3.2 27 111-137 21-47 (231)
330 1np6_A Molybdopterin-guanine d 95.3 0.011 3.8E-07 45.9 3.2 24 115-138 6-29 (174)
331 2i3b_A HCR-ntpase, human cance 95.2 0.0091 3.1E-07 47.1 2.6 22 117-138 3-24 (189)
332 3b60_A Lipid A export ATP-bind 95.2 0.0066 2.3E-07 56.2 2.1 49 82-138 343-392 (582)
333 3t61_A Gluconokinase; PSI-biol 95.2 0.01 3.5E-07 46.8 2.9 23 115-137 18-40 (202)
334 3b5x_A Lipid A export ATP-bind 95.2 0.0076 2.6E-07 55.8 2.4 28 111-138 365-392 (582)
335 2wwf_A Thymidilate kinase, put 95.2 0.017 5.8E-07 45.6 4.2 24 114-137 9-32 (212)
336 2rhm_A Putative kinase; P-loop 95.2 0.014 4.7E-07 45.3 3.6 23 115-137 5-27 (193)
337 2ehv_A Hypothetical protein PH 95.2 0.013 4.4E-07 47.5 3.5 25 112-136 27-51 (251)
338 3tui_C Methionine import ATP-b 95.2 0.013 4.6E-07 51.0 3.7 28 111-138 50-77 (366)
339 3eie_A Vacuolar protein sortin 95.1 0.068 2.3E-06 45.4 8.1 23 115-137 51-73 (322)
340 1cke_A CK, MSSA, protein (cyti 95.1 0.013 4.4E-07 46.9 3.4 22 116-137 6-27 (227)
341 4b4t_I 26S protease regulatory 95.1 0.1 3.6E-06 46.3 9.4 26 113-138 214-239 (437)
342 2yvu_A Probable adenylyl-sulfa 95.1 0.017 5.7E-07 44.9 3.9 25 113-137 11-35 (186)
343 3b9p_A CG5977-PA, isoform A; A 95.1 0.24 8.2E-06 41.1 11.3 23 115-137 54-76 (297)
344 3rlf_A Maltose/maltodextrin im 95.1 0.014 4.9E-07 51.1 3.7 29 111-139 25-53 (381)
345 2cdn_A Adenylate kinase; phosp 95.1 0.017 5.9E-07 45.4 3.9 26 112-137 17-42 (201)
346 1kht_A Adenylate kinase; phosp 95.1 0.014 4.8E-07 45.2 3.3 23 115-137 3-25 (192)
347 2pjz_A Hypothetical protein ST 95.1 0.014 4.9E-07 48.4 3.5 25 115-139 30-54 (263)
348 3trf_A Shikimate kinase, SK; a 95.1 0.014 4.9E-07 45.0 3.4 23 115-137 5-27 (185)
349 2yyz_A Sugar ABC transporter, 95.1 0.015 5.2E-07 50.6 3.7 27 112-138 26-52 (359)
350 2it1_A 362AA long hypothetical 95.0 0.015 5.2E-07 50.6 3.7 28 111-138 25-52 (362)
351 3iij_A Coilin-interacting nucl 95.0 0.018 6E-07 44.4 3.7 24 114-137 10-33 (180)
352 2kjq_A DNAA-related protein; s 95.0 0.012 4.1E-07 44.4 2.7 25 114-138 35-59 (149)
353 2gza_A Type IV secretion syste 95.0 0.013 4.5E-07 50.9 3.3 25 114-138 174-198 (361)
354 2vp4_A Deoxynucleoside kinase; 95.0 0.016 5.4E-07 46.9 3.5 28 111-138 16-43 (230)
355 1sq5_A Pantothenate kinase; P- 95.0 0.016 5.4E-07 49.2 3.6 25 113-137 78-102 (308)
356 4f4c_A Multidrug resistance pr 95.0 0.0069 2.3E-07 61.4 1.5 51 80-138 1076-1128(1321)
357 2f1r_A Molybdopterin-guanine d 95.0 0.0067 2.3E-07 47.1 1.1 23 116-138 3-25 (171)
358 4f4c_A Multidrug resistance pr 94.9 0.0099 3.4E-07 60.3 2.6 50 81-138 416-467 (1321)
359 3n70_A Transport activator; si 94.9 0.085 2.9E-06 39.2 7.3 23 116-138 25-47 (145)
360 3cm0_A Adenylate kinase; ATP-b 94.9 0.014 4.8E-07 45.1 3.0 23 115-137 4-26 (186)
361 1v43_A Sugar-binding transport 94.9 0.017 5.8E-07 50.5 3.7 28 111-138 33-60 (372)
362 1nks_A Adenylate kinase; therm 94.9 0.016 5.6E-07 44.8 3.3 21 117-137 3-23 (194)
363 1gvn_B Zeta; postsegregational 94.9 0.017 5.9E-07 48.5 3.6 24 114-137 32-55 (287)
364 1rz3_A Hypothetical protein rb 94.9 0.018 6.2E-07 45.4 3.6 25 113-137 20-44 (201)
365 2c95_A Adenylate kinase 1; tra 94.9 0.02 6.9E-07 44.5 3.7 24 114-137 8-31 (196)
366 2if2_A Dephospho-COA kinase; a 94.9 0.016 5.5E-07 45.6 3.2 21 117-137 3-23 (204)
367 3syl_A Protein CBBX; photosynt 94.8 0.17 5.8E-06 42.2 9.7 25 113-137 65-89 (309)
368 4a82_A Cystic fibrosis transme 94.8 0.0066 2.3E-07 56.2 0.9 49 82-138 341-390 (578)
369 3jvv_A Twitching mobility prot 94.8 0.016 5.4E-07 50.4 3.2 25 114-138 122-146 (356)
370 1g29_1 MALK, maltose transport 94.8 0.018 6.2E-07 50.3 3.6 28 112-139 26-53 (372)
371 4e22_A Cytidylate kinase; P-lo 94.8 0.02 7E-07 47.0 3.7 23 114-136 26-48 (252)
372 1odf_A YGR205W, hypothetical 3 94.8 0.02 6.8E-07 48.3 3.7 25 113-137 29-53 (290)
373 2plr_A DTMP kinase, probable t 94.8 0.019 6.4E-07 45.2 3.4 23 115-137 4-26 (213)
374 1jjv_A Dephospho-COA kinase; P 94.8 0.019 6.3E-07 45.3 3.3 22 116-137 3-24 (206)
375 3b9q_A Chloroplast SRP recepto 94.7 0.018 6.2E-07 48.8 3.4 25 113-137 98-122 (302)
376 2ewv_A Twitching motility prot 94.7 0.016 5.6E-07 50.5 3.1 26 113-138 134-159 (372)
377 1ukz_A Uridylate kinase; trans 94.7 0.025 8.7E-07 44.4 4.0 23 114-136 14-36 (203)
378 2v54_A DTMP kinase, thymidylat 94.7 0.022 7.4E-07 44.7 3.5 24 115-138 4-27 (204)
379 2jaq_A Deoxyguanosine kinase; 94.6 0.02 6.8E-07 44.7 3.2 21 117-137 2-22 (205)
380 3vfd_A Spastin; ATPase, microt 94.6 0.18 6.2E-06 43.9 9.7 23 115-137 148-170 (389)
381 1qf9_A UMP/CMP kinase, protein 94.6 0.029 9.8E-07 43.3 4.1 23 115-137 6-28 (194)
382 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 7E-07 44.3 3.2 23 115-137 3-25 (196)
383 1zd8_A GTP:AMP phosphotransfer 94.6 0.022 7.4E-07 45.8 3.4 22 115-136 7-28 (227)
384 1zak_A Adenylate kinase; ATP:A 94.6 0.022 7.4E-07 45.6 3.4 23 115-137 5-27 (222)
385 1lw7_A Transcriptional regulat 94.6 0.014 4.8E-07 50.7 2.4 24 115-138 170-193 (365)
386 3d31_A Sulfate/molybdate ABC t 94.6 0.014 4.9E-07 50.5 2.5 29 111-139 22-50 (348)
387 1nn5_A Similar to deoxythymidy 94.6 0.025 8.6E-07 44.6 3.8 24 114-137 8-31 (215)
388 2rcn_A Probable GTPase ENGC; Y 94.6 0.029 9.9E-07 48.7 4.3 57 193-251 128-188 (358)
389 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.018 6.2E-07 49.4 3.0 25 114-138 170-194 (330)
390 1aky_A Adenylate kinase; ATP:A 94.6 0.023 8E-07 45.3 3.5 23 115-137 4-26 (220)
391 3tqc_A Pantothenate kinase; bi 94.6 0.022 7.6E-07 48.7 3.5 25 113-137 90-114 (321)
392 1jbk_A CLPB protein; beta barr 94.5 0.024 8.4E-07 43.3 3.4 24 115-138 43-66 (195)
393 3hu3_A Transitional endoplasmi 94.5 0.076 2.6E-06 48.1 7.1 24 114-137 237-260 (489)
394 1xjc_A MOBB protein homolog; s 94.4 0.026 9E-07 43.6 3.3 23 115-137 4-26 (169)
395 3fb4_A Adenylate kinase; psych 94.4 0.023 7.9E-07 45.1 3.2 21 117-137 2-22 (216)
396 3qf4_A ABC transporter, ATP-bi 94.4 0.011 3.8E-07 54.8 1.3 50 81-138 342-392 (587)
397 1oxx_K GLCV, glucose, ABC tran 94.4 0.014 4.7E-07 50.7 1.8 28 112-139 28-55 (353)
398 1nij_A Hypothetical protein YJ 94.3 0.02 6.7E-07 48.9 2.7 24 115-138 4-27 (318)
399 2bwj_A Adenylate kinase 5; pho 94.3 0.029 9.9E-07 43.7 3.5 23 115-137 12-34 (199)
400 1uf9_A TT1252 protein; P-loop, 94.3 0.03 1E-06 43.7 3.6 25 114-138 7-31 (203)
401 3dl0_A Adenylate kinase; phosp 94.3 0.026 8.8E-07 44.8 3.2 21 117-137 2-22 (216)
402 2vli_A Antibiotic resistance p 94.3 0.021 7.1E-07 43.9 2.5 23 115-137 5-27 (183)
403 3tlx_A Adenylate kinase 2; str 94.3 0.029 9.8E-07 45.8 3.5 24 114-137 28-51 (243)
404 3umf_A Adenylate kinase; rossm 94.3 0.035 1.2E-06 44.7 3.9 25 113-137 27-51 (217)
405 2oap_1 GSPE-2, type II secreti 94.3 0.025 8.5E-07 51.6 3.3 25 114-138 259-283 (511)
406 3u61_B DNA polymerase accessor 94.3 0.31 1.1E-05 41.0 10.1 22 116-137 49-70 (324)
407 2qp9_X Vacuolar protein sortin 94.3 0.099 3.4E-06 45.1 7.0 24 115-138 84-107 (355)
408 2pez_A Bifunctional 3'-phospho 94.2 0.027 9.3E-07 43.3 3.1 24 114-137 4-27 (179)
409 2w0m_A SSO2452; RECA, SSPF, un 94.2 0.028 9.6E-07 44.7 3.2 26 112-137 20-45 (235)
410 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.024 8.1E-07 51.0 2.9 26 113-138 136-161 (460)
411 2x8a_A Nuclear valosin-contain 94.2 0.023 7.8E-07 47.4 2.6 20 118-137 47-66 (274)
412 3cf2_A TER ATPase, transitiona 94.1 0.24 8.2E-06 47.5 9.9 26 113-138 236-261 (806)
413 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.031 1E-06 46.1 3.4 23 115-137 4-26 (260)
414 2iyv_A Shikimate kinase, SK; t 94.1 0.027 9.3E-07 43.4 2.9 22 116-137 3-24 (184)
415 1p9r_A General secretion pathw 94.1 0.027 9.2E-07 50.0 3.2 26 113-138 165-190 (418)
416 2og2_A Putative signal recogni 94.1 0.03 1E-06 48.7 3.4 124 113-240 155-317 (359)
417 2cvh_A DNA repair and recombin 94.1 0.033 1.1E-06 44.0 3.5 27 111-137 16-42 (220)
418 3ozx_A RNAse L inhibitor; ATP 94.1 0.036 1.2E-06 50.8 4.0 28 112-139 22-49 (538)
419 1ixz_A ATP-dependent metallopr 94.0 0.025 8.6E-07 46.2 2.6 21 117-137 51-71 (254)
420 3be4_A Adenylate kinase; malar 94.0 0.028 9.7E-07 44.8 2.9 23 115-137 5-27 (217)
421 1cr0_A DNA primase/helicase; R 94.0 0.034 1.2E-06 46.6 3.5 28 111-138 31-58 (296)
422 2obl_A ESCN; ATPase, hydrolase 94.0 0.032 1.1E-06 48.3 3.3 28 111-138 67-94 (347)
423 1via_A Shikimate kinase; struc 94.0 0.029 9.9E-07 43.0 2.8 21 117-137 6-26 (175)
424 2p5t_B PEZT; postsegregational 94.0 0.026 8.9E-07 46.3 2.6 25 113-137 30-54 (253)
425 3bos_A Putative DNA replicatio 94.0 0.037 1.3E-06 44.1 3.5 25 114-138 51-75 (242)
426 1e4v_A Adenylate kinase; trans 93.9 0.037 1.3E-06 43.9 3.3 21 117-137 2-22 (214)
427 2yl4_A ATP-binding cassette SU 93.8 0.032 1.1E-06 51.8 3.2 28 111-138 366-393 (595)
428 2ze6_A Isopentenyl transferase 93.8 0.032 1.1E-06 45.8 2.9 21 117-137 3-23 (253)
429 1m7g_A Adenylylsulfate kinase; 93.8 0.039 1.3E-06 43.8 3.3 25 113-137 23-47 (211)
430 2dpy_A FLII, flagellum-specifi 93.8 0.038 1.3E-06 49.4 3.5 29 110-138 152-180 (438)
431 3sr0_A Adenylate kinase; phosp 93.8 0.038 1.3E-06 44.1 3.2 21 117-137 2-22 (206)
432 2zan_A Vacuolar protein sortin 93.8 0.22 7.5E-06 44.3 8.5 24 114-137 166-189 (444)
433 1yqt_A RNAse L inhibitor; ATP- 93.8 0.048 1.7E-06 50.0 4.3 28 112-139 44-71 (538)
434 1e6c_A Shikimate kinase; phosp 93.8 0.036 1.2E-06 42.1 3.0 22 116-137 3-24 (173)
435 3nwj_A ATSK2; P loop, shikimat 93.8 0.033 1.1E-06 45.8 2.8 23 115-137 48-70 (250)
436 1uj2_A Uridine-cytidine kinase 93.8 0.041 1.4E-06 45.0 3.4 25 113-137 20-44 (252)
437 3kta_A Chromosome segregation 93.8 0.047 1.6E-06 42.0 3.6 21 117-137 28-48 (182)
438 1gtv_A TMK, thymidylate kinase 93.7 0.018 6.1E-07 45.5 1.1 21 117-137 2-22 (214)
439 2pt5_A Shikimate kinase, SK; a 93.7 0.041 1.4E-06 41.6 3.1 21 117-137 2-22 (168)
440 2p65_A Hypothetical protein PF 93.7 0.033 1.1E-06 42.4 2.6 24 115-138 43-66 (187)
441 1ak2_A Adenylate kinase isoenz 93.7 0.048 1.6E-06 44.0 3.6 24 114-137 15-38 (233)
442 1lv7_A FTSH; alpha/beta domain 93.7 0.042 1.4E-06 44.9 3.3 22 116-137 46-67 (257)
443 2pbr_A DTMP kinase, thymidylat 93.6 0.042 1.5E-06 42.4 3.1 21 117-137 2-22 (195)
444 2z0h_A DTMP kinase, thymidylat 93.6 0.039 1.3E-06 42.8 3.0 21 117-137 2-22 (197)
445 1in4_A RUVB, holliday junction 93.6 0.035 1.2E-06 47.5 2.8 23 116-138 52-74 (334)
446 1vht_A Dephospho-COA kinase; s 93.6 0.045 1.5E-06 43.5 3.2 23 115-137 4-26 (218)
447 1n0w_A DNA repair protein RAD5 93.5 0.038 1.3E-06 44.4 2.8 27 111-137 20-46 (243)
448 2w58_A DNAI, primosome compone 93.5 0.049 1.7E-06 42.6 3.4 23 116-138 55-77 (202)
449 4eaq_A DTMP kinase, thymidylat 93.5 0.056 1.9E-06 43.7 3.8 24 114-137 25-48 (229)
450 1iy2_A ATP-dependent metallopr 93.4 0.037 1.3E-06 45.9 2.6 21 117-137 75-95 (278)
451 1svm_A Large T antigen; AAA+ f 93.3 0.054 1.9E-06 47.4 3.6 27 111-137 165-191 (377)
452 3d8b_A Fidgetin-like protein 1 93.3 0.21 7.3E-06 43.0 7.4 24 114-137 116-139 (357)
453 2xb4_A Adenylate kinase; ATP-b 93.3 0.051 1.7E-06 43.6 3.1 21 117-137 2-22 (223)
454 3j16_B RLI1P; ribosome recycli 93.2 0.064 2.2E-06 49.9 4.2 28 112-139 100-127 (608)
455 3r20_A Cytidylate kinase; stru 93.2 0.058 2E-06 43.9 3.3 22 115-136 9-30 (233)
456 3qf7_A RAD50; ABC-ATPase, ATPa 93.1 0.34 1.1E-05 42.0 8.3 21 116-136 24-44 (365)
457 3bk7_A ABC transporter ATP-bin 93.0 0.073 2.5E-06 49.5 4.2 28 112-139 114-141 (607)
458 3k9g_A PF-32 protein; ssgcid, 93.0 0.33 1.1E-05 39.6 7.8 66 162-238 144-209 (267)
459 1q3t_A Cytidylate kinase; nucl 92.9 0.074 2.5E-06 42.9 3.7 27 111-137 12-38 (236)
460 1zuh_A Shikimate kinase; alpha 92.9 0.066 2.3E-06 40.6 3.2 23 115-137 7-29 (168)
461 3cf0_A Transitional endoplasmi 92.8 0.065 2.2E-06 45.1 3.3 24 114-137 48-71 (301)
462 2ce7_A Cell division protein F 92.8 0.41 1.4E-05 43.1 8.7 22 116-137 50-71 (476)
463 2qmh_A HPR kinase/phosphorylas 92.8 0.078 2.7E-06 42.1 3.5 25 115-139 34-58 (205)
464 1nlf_A Regulatory protein REPA 92.7 0.069 2.4E-06 44.3 3.3 25 113-137 28-52 (279)
465 3ozx_A RNAse L inhibitor; ATP 92.7 0.069 2.3E-06 49.0 3.5 26 113-138 292-317 (538)
466 3a8t_A Adenylate isopentenyltr 92.7 0.083 2.8E-06 45.4 3.8 24 115-138 40-63 (339)
467 1njg_A DNA polymerase III subu 92.7 0.075 2.6E-06 42.0 3.3 22 116-137 46-67 (250)
468 3euj_A Chromosome partition pr 92.7 0.057 2E-06 48.7 2.9 22 116-137 30-51 (483)
469 2grj_A Dephospho-COA kinase; T 92.7 0.073 2.5E-06 41.9 3.2 26 113-138 10-35 (192)
470 3g5u_A MCG1178, multidrug resi 92.6 0.035 1.2E-06 56.1 1.6 49 82-138 389-439 (1284)
471 1tue_A Replication protein E1; 92.5 0.063 2.2E-06 42.9 2.6 24 114-137 57-80 (212)
472 4fcw_A Chaperone protein CLPB; 92.5 0.086 2.9E-06 44.1 3.6 24 115-138 47-70 (311)
473 1ltq_A Polynucleotide kinase; 92.5 0.078 2.7E-06 44.3 3.4 22 116-137 3-24 (301)
474 1yqt_A RNAse L inhibitor; ATP- 92.5 0.079 2.7E-06 48.5 3.6 26 114-139 311-336 (538)
475 3exa_A TRNA delta(2)-isopenten 92.4 0.082 2.8E-06 45.0 3.3 24 115-138 3-26 (322)
476 2dr3_A UPF0273 protein PH0284; 92.4 0.094 3.2E-06 42.1 3.6 26 112-137 20-45 (247)
477 3foz_A TRNA delta(2)-isopenten 92.4 0.095 3.2E-06 44.6 3.6 23 115-137 10-32 (316)
478 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.092 3.2E-06 39.4 3.2 22 115-136 23-44 (149)
479 1zcb_A G alpha I/13; GTP-bindi 92.2 0.09 3.1E-06 45.7 3.4 23 113-135 31-53 (362)
480 2qby_A CDC6 homolog 1, cell di 92.2 0.08 2.7E-06 45.4 3.1 24 115-138 45-68 (386)
481 3bk7_A ABC transporter ATP-bin 92.2 0.089 3.1E-06 48.9 3.6 26 114-139 381-406 (607)
482 1sxj_E Activator 1 40 kDa subu 92.1 0.079 2.7E-06 45.2 3.0 20 118-137 39-58 (354)
483 3zvl_A Bifunctional polynucleo 92.1 0.12 4E-06 45.7 4.1 25 114-138 257-281 (416)
484 3ake_A Cytidylate kinase; CMP 92.1 0.11 3.7E-06 40.6 3.5 21 117-137 4-24 (208)
485 3crm_A TRNA delta(2)-isopenten 92.0 0.1 3.5E-06 44.6 3.5 22 116-137 6-27 (323)
486 3cwq_A Para family chromosome 91.9 0.35 1.2E-05 38.2 6.4 66 162-240 67-134 (209)
487 1ofh_A ATP-dependent HSL prote 91.9 0.099 3.4E-06 43.5 3.3 23 115-137 50-72 (310)
488 3g5u_A MCG1178, multidrug resi 91.9 0.065 2.2E-06 54.2 2.4 28 111-138 1055-1082(1284)
489 1fnn_A CDC6P, cell division co 91.8 0.088 3E-06 45.3 2.9 23 116-138 45-67 (389)
490 1l8q_A Chromosomal replication 91.8 0.09 3.1E-06 44.5 2.9 24 115-138 37-60 (324)
491 3co5_A Putative two-component 91.8 0.078 2.7E-06 39.3 2.2 22 116-137 28-49 (143)
492 1a7j_A Phosphoribulokinase; tr 91.8 0.071 2.4E-06 44.8 2.2 23 115-137 5-27 (290)
493 1pzn_A RAD51, DNA repair and r 91.7 0.089 3E-06 45.4 2.8 29 110-138 126-154 (349)
494 1ypw_A Transitional endoplasmi 91.6 0.36 1.2E-05 46.4 7.2 26 113-138 236-261 (806)
495 3tqf_A HPR(Ser) kinase; transf 91.6 0.12 4.1E-06 40.1 3.2 26 115-140 16-41 (181)
496 2ocp_A DGK, deoxyguanosine kin 91.6 0.13 4.3E-06 41.6 3.5 23 115-137 2-24 (241)
497 1sxj_B Activator 1 37 kDa subu 91.6 0.19 6.6E-06 41.9 4.7 21 118-138 45-65 (323)
498 3j16_B RLI1P; ribosome recycli 91.5 0.12 4.1E-06 48.1 3.7 24 116-139 379-402 (608)
499 3d3q_A TRNA delta(2)-isopenten 91.3 0.12 4.1E-06 44.5 3.1 22 116-137 8-29 (340)
500 1jr3_A DNA polymerase III subu 91.3 0.12 4.2E-06 44.2 3.3 22 116-137 39-60 (373)
No 1
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=2.2e-20 Score=160.74 Aligned_cols=133 Identities=39% Similarity=0.567 Sum_probs=107.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|.+|+|||||+|++++.++..+++.++||+....+.....+.++.+|||||+.... ..+...+......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~-~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM-DALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC-SHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh-hHHHHHHHHHHHHH
Confidence 34568999999999999999999999988788888899887777777888999999999986543 34555566677788
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh-HHH
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~-~~~ 246 (254)
+..+|++++|+|+++.......++...+.....+.|+++|+||+|+...+. +.+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 138 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK 138 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH
Confidence 999999999999998776666666544443334799999999999987665 433
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.6e-19 Score=155.88 Aligned_cols=137 Identities=39% Similarity=0.584 Sum_probs=105.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccc-hhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~-~~~~~~~~~~~ 188 (254)
+.++...|+++|.+|+|||||+|++++.++..+++.+++|+....+..... +.++.+|||||+.+.. ...+...+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 455667999999999999999999999998888899999998888888887 8999999999986543 13344555566
Q ss_pred HHHHccCccEEEEEEeCCCCchhHHHHH-HHhhcccCCCCCEEEEEecCCCC-ChHhHHHHHH
Q 025346 189 VRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLE 249 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~~~~~~~~-~~~~~~~~~~~piivV~nK~Dl~-~~~~~~~~~~ 249 (254)
...++..+|++++|+|+++......... ...+.. .+.|+++|+||+|+. +.+...+...
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~ 146 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLID 146 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHH
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHH
Confidence 7778899999999999998544333322 333332 468999999999998 5555444433
No 3
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=1.4e-21 Score=177.85 Aligned_cols=222 Identities=23% Similarity=0.219 Sum_probs=115.0
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeeccc---ccccccch------------HHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSNE---HQSLVLSE------------KEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.|-.-|.+++.+||+|.+.|+.+......-+... .+....+. .+....-++.-+..++|++| +.
T Consensus 120 ~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~ee-di 198 (476)
T 3gee_A 120 CRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEE-DV 198 (476)
T ss_dssp CEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSS-CC
T ss_pred CeecCCcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcc-cc
Confidence 4667799999999999999988754433322221 11111100 01111112223445778874 55
Q ss_pred CccChHhhhhhccCCcCCCC-CCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE
Q 025346 76 EFDDASSFLSLSEKPDRNMA-SPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~ 154 (254)
+...+..+..........+. ++....... ....+.+|+++|.+|+|||||+|++++.+...+++.+++|++..
T Consensus 199 ~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~------~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~ 272 (476)
T 3gee_A 199 EFQSRDELTMQIETLRSEVNRLIDSYQHGR------IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI 272 (476)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCEEEEEECCTTSSHHHHHHHCC------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhH------hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEE
Confidence 55555444443333322221 111111111 11234679999999999999999999988777889999999988
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchh-----HHHHHHHhhcccCCCCCE
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-----IDEILEEGVGDHKDKLPI 229 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~-----~~~~~~~~~~~~~~~~pi 229 (254)
...+...+..+.+|||||+.+.. ..++.........++..+|++++|+|+++.... ...++.. .. +.|+
T Consensus 273 ~~~i~~~g~~l~liDT~G~~~~~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~----l~-~~pi 346 (476)
T 3gee_A 273 EECFIHDKTMFRLTDTAGLREAG-EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA----HP-AAKF 346 (476)
T ss_dssp CEEEEETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH----CT-TSEE
T ss_pred EEEEEECCeEEEEEECCCCCcch-hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh----cC-CCCE
Confidence 88888889999999999975421 222333334455678999999999999985432 2223222 22 6899
Q ss_pred EEEEecCCCCChHhHH
Q 025346 230 LLVLNKKDLIKPGEIA 245 (254)
Q Consensus 230 ivV~nK~Dl~~~~~~~ 245 (254)
++|+||+|+.......
T Consensus 347 IvV~NK~Dl~~~~~~~ 362 (476)
T 3gee_A 347 LTVANKLDRAANADAL 362 (476)
T ss_dssp EEEEECTTSCTTTHHH
T ss_pred EEEEECcCCCCccchh
Confidence 9999999998776553
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=7.5e-19 Score=143.86 Aligned_cols=135 Identities=22% Similarity=0.231 Sum_probs=97.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEe-cCCeeEEEEecCCCcccchhhh-hH---HH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHML-DS---MM 185 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~-~~---~~ 185 (254)
....++|+++|.+|+|||||+|++++.. ...+...+++|......... ..+..+.+|||||+........ .. ..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3456799999999999999999999987 45677888888876655555 6678999999999765321111 11 12
Q ss_pred HHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
...+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+...+++....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~ 166 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINAL 166 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHH
Confidence 2233334556899999999998766555544444443 568999999999999877654433
No 5
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=1.3e-18 Score=143.35 Aligned_cols=132 Identities=18% Similarity=0.249 Sum_probs=89.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
......+|+++|.+|+|||||+|++++..+. +...+++|...........+..+.+|||||+.+.............+.
T Consensus 25 ~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 25 INPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 3456789999999999999999999998876 667778888777777777788999999999754332222222123334
Q ss_pred HHccCccEEEEEEeCCCCc--h--hHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 191 SAGINADCIVVLVDACKAP--E--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~--~--~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+...+|++++|+|+++.. . ....++..+.. ...+.|+++|+||+|+...+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~-~~~~~piilv~nK~Dl~~~~~~ 160 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS-VFSNKSIVIGFNKIDKCNMDSL 160 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT-CC-CCCEEEEEECGGGCC--CC
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH-hhcCCcEEEEEeCcccCCchhh
Confidence 4578899999999998742 2 12234433332 2347999999999999876543
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=5.4e-19 Score=136.87 Aligned_cols=122 Identities=26% Similarity=0.370 Sum_probs=87.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
++++++|.+|+|||||++++.+..+......+++|...........+..+.+|||||..... .........+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD--KWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSS--SCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCcc--chHHHHHHHHHHHHHh
Confidence 58999999999999999999998866566777777766666667777899999999965432 1233344556677899
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+|++++|+|+++.......++...+.. .+.|+++|+||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 999999999998766665555555443 46899999999999765
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=6e-19 Score=159.39 Aligned_cols=123 Identities=26% Similarity=0.364 Sum_probs=88.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
++|+++|.+|+|||||+|++++.+.+.+.+.+++|++.......+.+..+.+|||||+.......+...+...+..++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 57999999999999999999999877789999999988888888888999999999986543333444555667778999
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+|++++|+|++.+....+.++..+++. .+.|+++|+||+|+..
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLR 124 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCcc
Confidence 999999999998776666555555542 3689999999999864
No 8
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=1.1e-18 Score=137.74 Aligned_cols=126 Identities=28% Similarity=0.356 Sum_probs=90.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+++++|.+|+|||||+|++.+.....+.+.+++|.+.....+...+..+.+|||||+.... ...+.........++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERAWQEI 81 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch-hHHHHHHHHHHHHHH
Confidence 3468999999999999999999998766567788888777666677777889999999975432 122222122233457
Q ss_pred cCccEEEEEEeCCCCch-hHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 194 INADCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~-~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
..+|++++|+|+++... ....++..+......++|+++|+||+|+..
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 89999999999987332 233444444443345799999999999853
No 9
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.77 E-value=9.2e-19 Score=143.69 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=87.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+..||+++|.+|+|||||++++....+. ..+.+|. .+ ......+...+.+.+|||+| +..+..+..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~--~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------ 80 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD--NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------ 80 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCC--CCcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH------
Confidence 45579999999999999999999988774 2332222 22 22233445567899999999 444444433
Q ss_pred HHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 190 RSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.+++.++++++|+|+++ ++..+..|+..+......+.|++||+||+|+.+.+++
T Consensus 81 -~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V 136 (216)
T 4dkx_A 81 -SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV 136 (216)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS
T ss_pred -HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcc
Confidence 45899999999999988 5677888888877766788999999999999766543
No 10
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=9.2e-18 Score=134.29 Aligned_cols=132 Identities=25% Similarity=0.315 Sum_probs=81.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhh-hHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML-DSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~ 188 (254)
+.....+|+++|.+|+|||||+|++++.. ...+.+.+++|........ +..+.+|||||+........ ...+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 34456899999999999999999999887 3445556666655443333 23799999999765432111 1112222
Q ss_pred HHHHc---cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHH
Q 025346 189 VRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 189 ~~~~~---~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
+..++ ..+|++++|+|+++........+...+.. .+.|+++|+||+|+.+.+++...
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~ 155 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKH 155 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHH
Confidence 23333 44599999999988655544433333332 57899999999999988766543
No 11
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=1.2e-20 Score=171.05 Aligned_cols=220 Identities=23% Similarity=0.237 Sum_probs=124.0
Q ss_pred CCccccccCCcchhhhccccccCCceeeeeecccc--------cc-------cccchHHHHHHHHhhhcccccCCCCCCC
Q 025346 11 FGSLFPHYSTLTAYREIKFGFQGRSSSITCRSNEH--------QS-------LVLSEKEVQQQKLWSNQREMDLDDGDEM 75 (254)
Q Consensus 11 ~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 75 (254)
.|-.-|.+++.+||+|-+.++.+......-+...- ++ ......+....-++.-+..++|++ +.
T Consensus 112 ~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~e--d~ 189 (462)
T 3geh_A 112 ARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE--DL 189 (462)
T ss_dssp CEECCTTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSS--SS
T ss_pred CeecCCchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccc--cC
Confidence 35677999999999999998877543333322111 00 000111111112223344467766 33
Q ss_pred CccChHhhhhhccCCcCCC-CCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE
Q 025346 76 EFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI 154 (254)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~ 154 (254)
+......+..........+ .++........ ...+.+|+++|.+|+|||||+|++++.+...+++.+++|++..
T Consensus 190 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~------~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~ 263 (462)
T 3geh_A 190 PPLDDEAIISDIENIAAEISQLLATKDKGEL------LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV 263 (462)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHTTTHHHHHH------HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhh------hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE
Confidence 3333322222211111111 11111111111 1234679999999999999999999988777888899998766
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEe
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~n 234 (254)
...+..++..+.+|||||+.+. ...++.........++..+|++++|+|++++.......+...+. +.|+++|+|
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~-~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~N 338 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRET-SDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMN 338 (462)
T ss_dssp HHEEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEE
T ss_pred EEEEEECCEEEEEEECCccccc-hhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEE
Confidence 6666677889999999997542 22233333344556788999999999999876555444433332 369999999
Q ss_pred cCCCCChHh
Q 025346 235 KKDLIKPGE 243 (254)
Q Consensus 235 K~Dl~~~~~ 243 (254)
|+|+.....
T Consensus 339 K~Dl~~~~~ 347 (462)
T 3geh_A 339 KIDLVEKQL 347 (462)
T ss_dssp CTTSSCGGG
T ss_pred CCCCCcchh
Confidence 999987654
No 12
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=134.36 Aligned_cols=122 Identities=23% Similarity=0.231 Sum_probs=79.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+|+++|.+|+|||||++++.+..+....+.++++........++....+.+|||||....... .....++.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~~ 76 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKS-------WSQESCLQ 76 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------C-------HHHHHTTT
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchh-------hhHHhhcc
Confidence 46899999999999999999999887655555555544443344444568999999995432111 12234578
Q ss_pred CccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 195 NADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 195 ~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|++++|+|+++ ++.....++..+.... ..+.|+++|+||+|+.+.++
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~ 128 (175)
T 2nzj_A 77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE 128 (175)
T ss_dssp SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc
Confidence 8999999999987 3445556665554432 35799999999999986543
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=1.9e-17 Score=132.02 Aligned_cols=133 Identities=29% Similarity=0.376 Sum_probs=90.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhh----hHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML----DSMMMK 187 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~ 187 (254)
....++|+++|.+|+|||||++++++.......+.+++|........ +..+.+|||||+........ ......
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34567999999999999999999999886666777777765544333 34688999999754322111 111223
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHH
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~ 249 (254)
.+......++++++|+|++.........+...+.. .+.|+++|+||+|+.++++.....+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~ 156 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLE 156 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHH
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHH
Confidence 33334456799999999988655444433333332 3689999999999987766554433
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.76 E-value=4.7e-18 Score=136.35 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=85.0
Q ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 110 ~~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+.....+|+++|.+|+|||||++++.+..+..+. +.+|.. .....++.....+.+|||||... +..+ +
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~ 80 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-ITATVG-YNVETFEKGRVAFTVFDMGGAKK--FRGL-------W 80 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----C-CCCCSS-EEEEEEEETTEEEEEEEECCSGG--GGGG-------G
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc-cccccc-eeEEEEEeCCEEEEEEECCCCHh--HHHH-------H
Confidence 34556679999999999999999999998876322 222222 23334567889999999999533 2222 2
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC--------CCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~--------~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++|+|+|+++. +.....++..++.... .+.|+++|+||+|+....
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 3557899999999999984 4566677776655411 379999999999998773
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=1.9e-18 Score=156.03 Aligned_cols=123 Identities=32% Similarity=0.422 Sum_probs=85.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
++|+++|.+|+|||||+|++++.....+.+.+++|++.......+.+..+.+|||||+..... .+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE-PFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch-hHHHHHHHHHHHHHHh
Confidence 689999999999999999999998887899999999988888888889999999999753322 2444555666777899
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+|++++|+|++++....+.++...++ ..+.|+++|+||+|+...
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~--~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT--TCCSCEEEEEECCCC---
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCccc
Confidence 99999999999877777776666665 357899999999999754
No 16
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=2.8e-18 Score=147.65 Aligned_cols=135 Identities=35% Similarity=0.596 Sum_probs=100.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|++|+|||||+|++++.++..+++.+++|+....+.+...+.++.+|||||+.......+...+.......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34568999999999999999999999887778888888877777778888999999999975122222322332333456
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC-hHhHHHHHHH
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEV 250 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~-~~~~~~~~~~ 250 (254)
+..+|++++|+|+++ ......++...+. ..+.|+++|+||+|+.. ...+.+....
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~ 141 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQF 141 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHH
Confidence 789999999999988 6655555554443 34689999999999997 4555444443
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=135.20 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=87.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+. ....++++.......+...+ ..+.+|||||.. .+..+ +..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE--RFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG--GGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcH--hhhhh-------HHH
Confidence 4568999999999999999999988765 33344555444444444443 679999999943 22222 334
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.+.+.
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~ 138 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV 138 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence 57899999999999883 45566676666555556899999999999986643
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.75 E-value=6.7e-18 Score=131.43 Aligned_cols=119 Identities=25% Similarity=0.233 Sum_probs=72.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++++|.+|+|||||++++.+.......+.++++.. .....+.....+.+|||||... +. .....++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~--~~-------~~~~~~~~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG--GR-------WLPGHCMA 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCcc--ch-------hhhhhhhh
Confidence 45899999999999999999998877655566666653 2334455667899999999432 22 22334578
Q ss_pred CccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 195 ~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
.+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.++
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc
Confidence 99999999999873 455666666655432 36799999999999986543
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=6.2e-18 Score=133.38 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=83.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+......+.++......... +....+.+|||||.... ...+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~ 78 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF---------RSVTH 78 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH---------HHHHH
Confidence 44568999999999999999999988775333344444443333333 33458999999994321 12344
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +..+..++..+......+.|+++|+||+|+.+++
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 567899999999999883 3445566666554444679999999999998643
No 20
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=1.9e-17 Score=129.40 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=85.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+..+.. ..+ +. ......+...+..+.+|||||... +.. .+..+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~-t~-~~~~~~~~~~~~~~~~~Dt~G~~~--~~~-------~~~~~ 71 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT--TIP-TI-GFNVETVTYKNLKFQVWDLGGLTS--IRP-------YWRCY 71 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC-CS-SEEEEEEEETTEEEEEEEECCCGG--GGG-------GGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC--cCC-cC-ccceEEEEECCEEEEEEECCCChh--hhH-------HHHHH
Confidence 345789999999999999999999877642 222 22 223334555688999999999533 222 23355
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +.....++..++... ..+.|+++|+||+|+.+..
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 7899999999999874 566667776665542 2679999999999998763
No 21
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=3.7e-18 Score=154.92 Aligned_cols=126 Identities=31% Similarity=0.395 Sum_probs=88.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
...++|+++|.+|+|||||+|++.+.++..+.+.+++|++.......+.+..+.+|||||+... .......+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG-DEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc-chHHHHHHHHHHHhh
Confidence 3457999999999999999999999998888899999999888888888999999999997632 233445555667778
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+..+......++...++. .+.|+++|+||+|+...
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhh
Confidence 899999999999998888877777777663 57899999999998754
No 22
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=1e-17 Score=132.92 Aligned_cols=119 Identities=21% Similarity=0.134 Sum_probs=84.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+.. ...+..+........... ...+.+|||||.... . ..+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~~ 77 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF--R-------SVTR 77 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG--H-------HHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH--H-------HHHH
Confidence 345689999999999999999999887652 333444433333333333 368999999994322 1 3345
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+...
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 678899999999999873 344556665555444568999999999999754
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=5.3e-18 Score=132.27 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=84.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+|||||++++.+..+.. ..+..+++..............+.+|||||... +... ...++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~~~ 76 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER--FRAL-------APMYY 76 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--GGGG-------THHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh--hhcc-------cHhhC
Confidence 4689999999999999999999887542 122233333333334444557899999999532 2222 23457
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
..+|++++|+|+++. ......++..+.....++.|+++|+||+|+.+.++
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1z0j_A 77 RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE 128 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc
Confidence 889999999999884 34455566655554456799999999999976533
No 24
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=3.9e-17 Score=129.74 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
....+++++|.+|+|||||++++.+..+....+..+.+ ...+...+..+.+|||||... +. ..+..+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~--~~-------~~~~~~ 80 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGQRK--IR-------PYWRSY 80 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE----EEEEEETTEEEEEEECSSCGG--GH-------HHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE----EEEEEECCEEEEEEECCCCHH--HH-------HHHHHH
Confidence 45679999999999999999999988654333333322 223344578999999999432 21 234456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~ 244 (254)
+..+|++++|+|+++. +.....++..++... ..+.|+++|+||+|+.+....
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 135 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH
Confidence 7899999999999874 455566666665542 367999999999999876443
No 25
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=140.81 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=85.8
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC--CceEEEEEEEEecCCeeEEEEecCCCcccchh--hhhHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMK 187 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~ 187 (254)
.....+|+++|.+|+|||||+|++++..+. ....+ ++|...........+..+.+|||||+.+.... .....+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 345679999999999999999999998874 33333 56666666667778889999999998764322 12233445
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccC--CCCCEEEEEecCCCCChHhHH
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~--~~~piivV~nK~Dl~~~~~~~ 245 (254)
.+...+..+|++++|+|+++.......++..+..... ...|+++|+||+|+...+.+.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 5556678899999999998644444444444433221 235999999999998776555
No 26
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.74 E-value=1.9e-17 Score=131.35 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=85.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
...+..+|+++|.+|+|||||++++.+.++....+..+.+.. .+...+..+.+|||||... +... +.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~--~~~~-------~~ 83 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQES--LRSS-------WN 83 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGG--GTCG-------GG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHh--HHHH-------HH
Confidence 345567999999999999999999999887544444443322 2334578999999999533 2222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 557899999999999874 566667777666542 367999999999999764
No 27
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=2.9e-17 Score=131.09 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+|+++|.+|+|||||++++.+..+. ..+.+|... ....+...+..+.+|||||.. .+. ..+..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN--EDMIPTVGF-NMRKITKGNVTIKLWDIGGQP--RFR-------SMWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCCCCSE-EEEEEEETTEEEEEEEECCSH--HHH-------TTHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC--CccCCCCce-eEEEEEeCCEEEEEEECCCCH--hHH-------HHHHHHH
Confidence 3568999999999999999999987764 122222221 223356678899999999942 211 2344557
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++ ++.....++..+.... ..+.|+++|+||+|+...
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 89999999999987 3456666776665542 267999999999999865
No 28
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=131.40 Aligned_cols=121 Identities=21% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+...... .+..|. ......+...+..+.+|||||.... ... +..+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~-------~~~~ 87 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ-NILPTI-GFSIEKFKSSSLSFTVFDMSGQGRY--RNL-------WEHY 87 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS-SCCCCS-SEEEEEEECSSCEEEEEEECCSTTT--GGG-------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC-CcCCcc-ceeEEEEEECCEEEEEEECCCCHHH--HHH-------HHHH
Confidence 4567999999999999999999998873212 222222 2344455666789999999995432 222 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccC---CCCCEEEEEecCCCCChHhH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~---~~~piivV~nK~Dl~~~~~~ 244 (254)
+..+|++++|+|+++. +.....++..+..... .+.|+++|+||+|+......
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 144 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS 144 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH
Confidence 7899999999999884 5566667766665433 57999999999999865333
No 29
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.74 E-value=1.9e-17 Score=133.63 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=79.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|++|+|||||++++.+.++....+..+.+ ...+..++..+.+|||||.... ..+ +..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~--~~~-------~~~~ 89 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQA--RRV-------WKNY 89 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC------CCG-------GGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhh--HHH-------HHHH
Confidence 44568999999999999999999988765333222222 2344455689999999995332 221 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~ 240 (254)
+..+|++++|+|+++. +.....++..+.+. ...+.|+++|+||+|+.+
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 7899999999999874 45566777766554 235799999999999975
No 30
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=9.1e-18 Score=134.59 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.....+|+++|.+|+|||||++++.+..+.. ...+..+.+.....+. .....+.+|||||... +. ..+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~~-------~~~ 92 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER--FN-------SIT 92 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG--GH-------HHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH--HH-------HHH
Confidence 3445689999999999999999999887652 2233333333333333 3346899999999432 22 223
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+...+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 4557789999999999883 4445555555444444679999999999997653
No 31
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=1.9e-17 Score=130.23 Aligned_cols=121 Identities=20% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccC-CCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+|+++|.+|+|||||++++.+..+..... ..+.+........+.....+.+|||||... +. ..+..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~-------~~~~~ 83 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER--FR-------AVTRS 83 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG--TC-------HHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH--hh-------hhHHH
Confidence 345799999999999999999999887642111 112222222233344456899999999432 22 22345
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.+.+
T Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred HhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 57899999999999873 3455566665555445689999999999997543
No 32
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.74 E-value=1.3e-17 Score=129.40 Aligned_cols=118 Identities=21% Similarity=0.179 Sum_probs=81.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+.. .+.+++....... .+.....+.+|||||.... .. ....+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~-------~~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF--AS-------MRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--HH-------HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhh--HH-------HHHHH
Confidence 4689999999999999999999887642 3333333322333 3333456999999995332 22 23345
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|++++|+|+++ ++.....++..+.... ..+.|+++|+||+|+.+.++
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 125 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc
Confidence 678999999999998 3445556665555433 25799999999999976433
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=7e-18 Score=132.66 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
+..+|+++|.+|+|||||++++++..+. ....+..+.+......... ...+.+|||||.. .+... +..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSL-------IPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGGGG-------SHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH--HHHHH-------HHH
Confidence 3468999999999999999999987765 2334444444444333333 4689999999943 22222 224
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.++++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 136 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ 136 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc
Confidence 46789999999999873 45566666666554456799999999999976543
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=7e-18 Score=131.44 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCC-CCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+|||||++++.+..+...... .+.+..............+.+|||||... +... +..++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~-------~~~~~ 76 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER--YHSL-------APMYY 76 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG--GGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH--hhhh-------hHHhc
Confidence 46899999999999999999998776432222 22222233333444567899999999432 2222 33457
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.+.
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 899999999999874 455666666666555568999999999999754
No 35
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=3.6e-17 Score=126.99 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=82.1
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+|+++|.+|+|||||++++.+..+.. ..|... .....+...+..+.+|||||... +. ..+..++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIPTIG--FNVETVEYKNISFTVWDVGGQDK--IR-------PLWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSS--CCEEEEECSSCEEEEEECCCCGG--GH-------HHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccCcCc--eeEEEEEECCEEEEEEEcCCChh--hH-------HHHHHHhccC
Confidence 79999999999999999999877642 222222 22334556778999999999532 11 2344568999
Q ss_pred cEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCCh
Q 025346 197 DCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 197 d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~ 241 (254)
|++++|+|+++. +.....++..+... ...+.|+++|+||+|+.+.
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999999999874 45566666665543 2357899999999999875
No 36
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=3.2e-17 Score=130.28 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=85.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+... ..+.+|.. .....+...+..+.+|||||... + ...+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~t~~-~~~~~~~~~~~~~~~~Dt~G~~~--~-------~~~~~~~ 82 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV---DTISPTLG-FNIKTLEHRGFKLNIWDVGGQKS--L-------RSYWRNY 82 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC---SSCCCCSS-EEEEEEEETTEEEEEEEECCSHH--H-------HTTGGGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC---CcccccCc-cceEEEEECCEEEEEEECCCCHh--H-------HHHHHHH
Confidence 4567999999999999999999998772 22222222 22334445688999999999522 1 1223456
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.....+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 139 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 139 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHH
Confidence 8899999999999874 455566766665542 35799999999999987644433
No 37
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=3.5e-17 Score=133.10 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=81.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
.+..+|+++|.+|+|||||++++.+..+. ..+++++........+.. +..+.+|||||... +.. ..+..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~------~~~~~ 74 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES--LRF------QLLDR 74 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH--HHH------HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCChh--HHH------HHHHH
Confidence 34578999999999999999999988763 344555544333333333 67899999999532 111 12344
Q ss_pred HccCccEEEEEEeCCCCc---hhHHHHHHHhhcc---cCCCCCEEEEEecCCCCChHhHH
Q 025346 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~---~~~~~~~~~~~~~---~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
++..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+.......
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 134 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAK 134 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHH
T ss_pred HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHH
Confidence 688999999999998732 2233334433322 23578999999999998765443
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.3e-17 Score=133.56 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=85.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccc-cccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
+..+|+++|.+|+|||||++++.+..+. ...+..+++..............+.+|||||.. .+... +..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE--RFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG--GGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch--hhHhh-------hHHh
Confidence 3568999999999999999999988753 233334444444444445567789999999943 22222 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +..+..++..+......+.|+++|+||+|+.+.
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 7889999999999874 345556666655544467999999999999753
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=2.2e-17 Score=130.25 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=84.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCC-CCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+|+++|.+|+|||||++++++..+...... .+.+..............+.+|||||.. .+... +..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 80 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--RYHSL-------APM 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG--GGGGG-------THH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh--hhhhh-------hHH
Confidence 4456899999999999999999998876532211 1222222223334445689999999943 22222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.+.+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 57889999999999874 4555666666665545689999999999997654
No 40
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=4.2e-17 Score=130.63 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+..+....+..+. ....+..++..+.+|||||.... ..+ +..+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~--~~~-------~~~~ 87 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQA--RRL-------WKDY 87 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGG--TTS-------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHH--HHH-------HHHH
Confidence 3456899999999999999999998876533222222 23445556789999999995432 221 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.
T Consensus 88 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 88 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 7899999999999884 455666776665532 367999999999999763
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=1.4e-17 Score=129.33 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=80.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+. ..+.+++........ +.....+.+|||||.... . ..+..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~-------~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--A-------AIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C--H-------HHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh--H-------HHHHHH
Confidence 468999999999999999999988753 344444443333333 333468999999994322 2 223445
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +.....++..+..... .+.|+++|+||+|+.+.+
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence 7789999999999973 3445555555544332 479999999999997643
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=2.1e-17 Score=131.90 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+..+... ..+..+.+.... ..+.....+.+|||||.. .+. ...+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~------~~~~~ 88 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDGERIKIQLWDTAGQE--RFR------KSMVQ 88 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETTEEEEEEEEECCCSH--HHH------TTTHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCcceEEEEEEEEECCEEEEEEEEECCCch--hhh------hhhhH
Confidence 3457999999999999999999998876422 222222222222 233334689999999942 211 02234
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +..+..|+..+.... ..+.|+++|+||+|+.+.+
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI 143 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 557899999999999873 345556666655543 4679999999999997653
No 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=1.4e-17 Score=131.09 Aligned_cols=122 Identities=22% Similarity=0.307 Sum_probs=86.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
+..+..+|+++|.+|+|||||++++++..+ ...+.+++........... ...+.+|||||... +..+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE--FGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT--TSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchh--hHHHH------
Confidence 344567999999999999999999998865 3455556555444444444 35789999999533 22222
Q ss_pred HHHHccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 189 VRSAGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
..++..+|++++|+|+++ ++.....++..+.... ..+.|+++|+||+|+.+.++
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 131 (181)
T 2fn4_A 75 -EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131 (181)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC
T ss_pred -HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc
Confidence 234667999999999988 3455666666654432 35789999999999976543
No 44
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=2.3e-17 Score=130.61 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=83.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
...+..+|+++|.+|+|||||++++.+..+. ..+.+++......... .....+.+|||||.. .+..+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~~------ 83 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE--EFSAMR------ 83 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG--GGCSSH------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCch--hhHHHH------
Confidence 3455679999999999999999999987653 3343444333333333 334567789999943 333332
Q ss_pred HHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChH
Q 025346 189 VRSAGINADCIVVLVDACKA--PERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++++|+|+++. +..+..++..+... ...+.|+++|+||+|+.+.+
T Consensus 84 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 84 -EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 139 (183)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence 2346779999999999883 45556666655442 23678999999999997643
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=133.40 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=84.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+|+++|.+|+|||||++++.+..+......+ +.+..............+.+|||||.... ..+ +..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~-------~~~ 93 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY--RAI-------TSA 93 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT--CTT-------HHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh--hhh-------hHH
Confidence 33468999999999999999999988765322222 22222222333445678999999996432 222 334
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+...
T Consensus 94 ~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 57899999999999873 344566666665554567999999999999764
No 46
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=129.62 Aligned_cols=117 Identities=21% Similarity=0.220 Sum_probs=82.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE--EEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+.. ...+..+.. ......+.....+.+|||||... +... +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~-------~~~~ 72 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER--FASL-------APXY 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG--GGGG-------HHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChh--hhhh-------hhhh
Confidence 3589999999999999999999887642 222333222 22233344456899999999432 2222 3345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+......+.|+++|+||+|+...
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 7899999999999884 455566666666555568999999999999754
No 47
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.9e-17 Score=134.12 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=84.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec--CCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+. ....+..+.+.....+.. ....+.+|||||.. .+. ..+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE--RFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH--HHH-------HHHHH
Confidence 3468999999999999999999988764 233333333433333333 34689999999942 221 23446
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+.+.+
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~ 147 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 68899999999999873 4445666666555445679999999999997543
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=2.6e-17 Score=132.74 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=83.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccccc-CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+|||||++++++..+.... +..+.+..............+.+|||||.... . ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--R-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--H-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--c-------chHHHhh
Confidence 468999999999999999999998764221 11122222222333444678999999995322 1 2345668
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++. +.....|+..+......+.|+++|+||+|+.+.+
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 899999999999873 3445566666554444679999999999997643
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=3.5e-17 Score=128.65 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++++..+. ....+..+.......+... ...+.+|||||... +. ..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER--FR-------SLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGG--GH-------HHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh--hh-------hhHHH
Confidence 3568999999999999999999987764 2333333333333333333 46899999999432 21 23445
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccC----CCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHK----DKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~----~~~piivV~nK~Dl~~ 240 (254)
++..+|++++|+|+++. +.....++..+..... .+.|+++|+||+|+..
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 68899999999999883 3445555555443222 6789999999999974
No 50
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=1.3e-17 Score=131.94 Aligned_cols=118 Identities=28% Similarity=0.335 Sum_probs=82.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
+..+|+++|.+|+|||||++++.+..+ ...+.+++...........+ ..+.+|||||.... ..+ ...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~-------~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY--SIF-------PQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT--CCC-------CGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh--hHH-------HHH
Confidence 456899999999999999999997765 34444554444444444443 67899999995432 221 224
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++ ++..+..++..+.... ..+.|+++|+||+|+.+.+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 5788999999999987 3455556666554433 3578999999999997544
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=2.1e-17 Score=128.78 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=79.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+.++. ....++.+......... .....+.+|||||.. .+... +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE--RFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGG--GTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh--hhhhh-------HHHH
Confidence 358999999999999999999988764 22333333333333333 334689999999943 22222 2344
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+..+|++++|+|+++. +.....++..+......+.|+++|+||+|+..
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 7899999999999873 34556666665554456799999999999954
No 52
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=7.4e-17 Score=128.43 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+.++....+..+.+. ..+...+..+.+|||||... +... +..+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~ 80 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQES--LRSS-------WNTY 80 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC------CGG-------GHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHh--HHHH-------HHHH
Confidence 446799999999999999999999877653333222221 22334578999999999533 2222 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 7899999999999874 566777777766542 257999999999999864
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=131.74 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ....++.+.......+...+ ..+.+|||||... +... +.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~ 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER--FRTI-------TS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG--CSSC-------CG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh--hhhh-------HH
Confidence 34578999999999999999999998875 34455555555544444444 7899999999432 2222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +.....++..+.. ...+.|+++|+||+|+.+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDDPERK 129 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HCTTSEEEEEEECTTCGGGC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECCCCchhc
Confidence 457899999999999883 3444555555443 34579999999999987643
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=1.7e-17 Score=128.92 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=81.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+. ..+.+++....... .+.....+.+|||||.... ..+ +..+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~-------~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF--TAM-------RDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS--TTH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHH--HHH-------HHHH
Confidence 458999999999999999999987663 33334443333332 3344568999999995432 222 2244
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.+
T Consensus 72 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc
Confidence 6679999999999873 345555655554432 3579999999999997643
No 55
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.73 E-value=9e-18 Score=141.24 Aligned_cols=119 Identities=25% Similarity=0.352 Sum_probs=88.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh----hhhHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRS 191 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~~~~~~~~ 191 (254)
++|+++|.+|+|||||+|++.+.... +++.|++|.+...+.+...+..+.+|||||+...... ..+... ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 57999999999999999999998754 7888999988888888888889999999997654321 222222 222
Q ss_pred Hc--cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~--~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++ ..+|++++|+|+++. +....+...+. ..+.|+++|+||+|+...+
T Consensus 78 ~~~~~~~d~vi~VvDas~~-~~~~~l~~~l~---~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHL-ERHLYLTSQLF---ELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGH-HHHHHHHHHHT---TSCSCEEEEEECHHHHHHT
T ss_pred HHhhCCCCEEEEEeeCCCc-hhHHHHHHHHH---HcCCCEEEEEEChhcCCcC
Confidence 33 789999999999883 22223333322 2478999999999986543
No 56
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=133.81 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+.. ...+..+.+.....+... ...+.+|||||.. .+. ..+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~-------~~~~ 96 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE--RFR-------TITQ 96 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG--GGH-------HHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH--hHH-------HHHH
Confidence 345689999999999999999999877642 222222222223333333 3689999999943 222 2344
Q ss_pred HHccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++ ++..+..|+..+......+.|+++|+||+|+...
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 56889999999999987 3455666666665544567999999999999764
No 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=2.7e-17 Score=130.56 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=80.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+. ..+++++......... +....+.+|||||... +..+ +..+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~ 72 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAM-------RDQY 72 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTT-------HHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHH--HHHH-------HHHH
Confidence 468999999999999999999988763 4445555444444333 3345688899999433 2222 2234
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 73 MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 6679999999999883 345556665554432 357999999999999754
No 58
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=1.7e-16 Score=139.54 Aligned_cols=134 Identities=26% Similarity=0.389 Sum_probs=99.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
....+++++|.+|+|||||+|++.+.... +...+++|...........+..+.+|||||+...................
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 45679999999999999999999998743 66778888777777776678899999999987654433333333444455
Q ss_pred ccCccEEEEEEeCCCC----chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHH
Q 025346 193 GINADCIVVLVDACKA----PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~----~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~ 248 (254)
...+|++++|+|+++. ......++..+.... .+.|+++|+||+|+....++.+..
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~ 302 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLE 302 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHH
Confidence 6689999999998763 344455555554433 279999999999999877664433
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=3.7e-17 Score=132.58 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=82.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++++..+. ....++.+.......+...+ ..+.+|||||.. .+... +.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 87 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE--RFRTI-------TT 87 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG--GGTCC-------CH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcH--HHHHH-------HH
Confidence 44579999999999999999999988764 23334444333333344344 689999999943 22222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+..
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 457899999999999873 44555666665554455799999999999953
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=134.27 Aligned_cols=122 Identities=28% Similarity=0.340 Sum_probs=82.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
+..+..+|+++|.+|+|||||++++.+..+. ..+.+++........ ......+.+|||||.... ..+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY--SIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT--CCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccch--HHH-------
Confidence 3445679999999999999999999998875 334444443333333 345678899999995432 222
Q ss_pred HHHHccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHh
Q 025346 189 VRSAGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~ 243 (254)
+..++..+|++++|+|+++ ++..+..++..+.... ..++|+++|+||+|+.+.++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 3oes_A 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE 146 (201)
T ss_dssp CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC
T ss_pred HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc
Confidence 2345789999999999987 3455666666665542 24789999999999976543
No 61
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.72 E-value=1.8e-17 Score=139.48 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+|+++|.+|+|||||+|++++..+. +++.+++|.....+.+...+..+.+|||||.........+......+.. ..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-KG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-HS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-hc
Confidence 468999999999999999999998865 7788999988888888888899999999997554322222222111111 26
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++.. ....++..+.. .+.|+++|+||+|+...
T Consensus 83 ~~d~ii~V~D~t~~~-~~~~~~~~l~~---~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 83 DADLVILVADSVNPE-QSLYLLLEILE---MEKKVILAMTAIDEAKK 125 (258)
T ss_dssp CCSEEEEEEETTSCH-HHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEeCCCchh-hHHHHHHHHHh---cCCCEEEEEECcCCCCc
Confidence 899999999999843 33344444433 47999999999998654
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=5.9e-17 Score=128.92 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=81.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE-EEEEecC-----------CeeEEEEecCCCcccchhh
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~-~~~~~~~-----------~~~~~liDtpG~~~~~~~~ 180 (254)
....+|+++|.+|+|||||++++.+..+.. ...+..+.... ....... ...+.+|||||.... .
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~- 84 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF--R- 84 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG--H-
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH--H-
Confidence 345799999999999999999999877642 22222222222 2222222 468999999995321 1
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCCh
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~ 241 (254)
..+..++..+|++++|+|+++. ...+..++..+..... .+.|+++|+||+|+.+.
T Consensus 85 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 85 ------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp ------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred ------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3345668899999999999873 3445566655544333 57999999999999764
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=6.1e-17 Score=125.29 Aligned_cols=115 Identities=23% Similarity=0.209 Sum_probs=78.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++.+..+. ....+++........ ......+.+|||||.... .. .+..++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~-------~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--SA-------MRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC--CH-------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhh--hH-------HHHHhh
Confidence 57999999999999999999987654 233334333333323 333467899999995432 22 223446
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++. ......++..+.... ..+.|+++|+||+|+.+.
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 789999999999873 344455555544332 247999999999999763
No 64
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=3.5e-17 Score=136.92 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecCCeeEEEEecCCCcccchhh---hhHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHM---LDSMMMKN 188 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~ 188 (254)
....+|+++|.+|+|||||+|++++.+.......+ ++|...........+..+.+|||||+.+..... ........
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 34579999999999999999999998876443333 467666667777888999999999986543211 11222233
Q ss_pred HHHHccCccEEEEEEeCCCCchhHHHHHHHhhccc---CCCCCEEEEEecCCCCCh
Q 025346 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~ 241 (254)
+......+|++++|+|+++........+..+.... ..+.|+++|+||+|+...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 33445999999999999863322222233322222 236899999999999763
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=2.7e-17 Score=130.24 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=82.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
..+..+|+++|.+|+|||||++++.+..+. ..+.+++.......+. .....+.+|||||.... . ..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~ 83 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--A-------AIR 83 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--H-------HHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc--H-------HHH
Confidence 345679999999999999999999988763 3444454444433333 33457999999995432 2 223
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~ 241 (254)
..++..+|++++|+|+++. +.....++..+..... .+.|+++|+||+|+.+.
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3456789999999999873 3455556555554333 47999999999999764
No 66
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=5.5e-17 Score=130.17 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+..+... .| |.......+...+..+.+|||||... +.. .+..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~-------~~~~~ 93 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNICFTVWDVGGQDK--IRP-------LWRHY 93 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CT-------THHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc--CC--cCceeEEEEEECCEEEEEEECCCCHh--HHH-------HHHHH
Confidence 4567999999999999999999998776422 22 22233344566788999999999532 222 23345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 7899999999999874 455666666655432 357999999999999775
No 67
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=3.9e-17 Score=140.87 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=87.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe-cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+|||||++++++.....++..+++|......... .++..+.+|||||.. .+ ....+...+..++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~--~~--~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD--VF--MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH--HH--HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH--HH--hhhhhhhHHHHHh
Confidence 468999999999999999999988555466677777766665554 357899999999943 22 1112223344567
Q ss_pred cCccEEEEEEeCCCCc--hhHHHH---HHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~--~~~~~~---~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++.. ..+..| +..+. ...++.|+++|+||+|+.+.
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~-~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLR-KYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHH-HHCTTCEEEEEEECGGGSCH
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHH-HhCCCCeEEEEEecccccch
Confidence 8999999999998843 444333 22222 22467999999999999984
No 68
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.72 E-value=7e-17 Score=136.67 Aligned_cols=128 Identities=19% Similarity=0.295 Sum_probs=90.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
....+|+++|.+|+|||||+|++++..+..+++.+++|...........+..+.+|||||+.+.. .+.......+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~--~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG--YINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT--EECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc--cchHHHHHHHHHH
Confidence 34568999999999999999999998876677777777766666677788899999999975532 2222222333333
Q ss_pred --ccCccEEEEEEeCCC-CchhHH-HHHHHhhcccCCC--CCEEEEEecCCCCChH
Q 025346 193 --GINADCIVVLVDACK-APERID-EILEEGVGDHKDK--LPILLVLNKKDLIKPG 242 (254)
Q Consensus 193 --~~~~d~iv~vid~~~-~~~~~~-~~~~~~~~~~~~~--~piivV~nK~Dl~~~~ 242 (254)
...+|+++||+|++. ...... .++..+......+ .|+++|+||+|+.+++
T Consensus 115 ~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999988765 344333 4444443332222 6999999999998765
No 69
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=5.8e-17 Score=128.20 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|++|+|||||++++.+.++....+..+.+. ......+..+.+|||||.... .. .+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~--~~-------~~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSI--RP-------YWRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----C--CT-------TGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHhH--HH-------HHHHH
Confidence 456799999999999999999999887743333333222 233445789999999996432 11 12345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 7899999999999874 456667777666543 367999999999999765
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=2.3e-17 Score=131.67 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=83.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccc-cCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
..+|+++|.+|+|||||++++.+..+... ....+++..............+.+|||||.... ... +..++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY--RTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS--CCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH--hhh-------HHHhc
Confidence 46999999999999999999998876422 122222332233333445678999999995432 222 23457
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++. +.....++..+......+.|+++|+||+|+...+
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 899999999999873 4455566666554444679999999999997643
No 71
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=131.15 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=84.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
..+..+|+++|.+|+|||||++++.+..+. ..+.+++.......+... ...+.+|||||.... . ..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~ 79 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY--A-------AIR 79 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC--H-------HHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh--H-------HHH
Confidence 345679999999999999999999988753 445555544433333333 458999999995332 2 223
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence 3456789999999999873 345556666555433 2479999999999997643
No 72
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=2.6e-17 Score=131.66 Aligned_cols=120 Identities=20% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+|+++|.+|+|||||++++.+..+....... +.+........+.....+.+|||||.. .+..+ +..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 89 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE--SFRSI-------TRS 89 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG--GTSCC-------CHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch--hhhhh-------HHH
Confidence 33468999999999999999999988765322221 222222222333344689999999943 22222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+|++++|+|+++. +..+..++..+......+.|+++|+||+|+...
T Consensus 90 ~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 57889999999999873 455566666665544568999999999999754
No 73
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=9.5e-17 Score=129.02 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE-ecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
+..+..+|+++|.+|+|||||++++.+............+........ ......+.+|||||... +.... ...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~----~~~ 89 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD--FFDPT----FDY 89 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC--TTCTT----CCH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH--HHhhh----hhc
Confidence 445667999999999999999998887533221111111211222222 35668999999999533 22221 000
Q ss_pred HHHccCccEEEEEEeCCCCchh----HHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~~~----~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++++|+|+++.... +..++..... ...+.|+++|+||+|+...+
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHH
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchh
Confidence 2446789999999999985322 2233333211 24689999999999998753
No 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.3e-17 Score=131.57 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+.++.. .+.+++..... ...+.....+.+|||||... . ..+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~-------~~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED---T-------IQRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---C-------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---c-------cchh
Confidence 446799999999999999999999887642 23333322222 23344457799999999654 1 2233
Q ss_pred HHccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++ ++..+..++..+.... ..+.|+++|+||+|+...
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 45678999999999987 3445555555544432 357999999999999764
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.2e-17 Score=127.94 Aligned_cols=118 Identities=22% Similarity=0.209 Sum_probs=77.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+.. .+.++...... ...+.....+.+|||||.... . ..+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--~-------~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF--P-------AMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC--H-------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchhh--H-------HHHHHh
Confidence 4589999999999999999999877642 22222212122 223334467999999995432 2 223344
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+.+.++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~ 126 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE 126 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence 6779999999999873 334444544433321 25789999999999976543
No 76
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=2.9e-17 Score=130.63 Aligned_cols=121 Identities=31% Similarity=0.358 Sum_probs=87.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+++++|++|+|||||++++.+..+. +...+++|.......+...+..+.+|||||............. ...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~~ 80 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDY 80 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH---HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH---HHHH
Confidence 35579999999999999999999987654 5667788877777777777899999999996543211111111 1122
Q ss_pred c--cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 G--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~--~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+ ..++++++|+|.++ ......++..+.. .+.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA-LERNLYLTLQLME---MGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHHCCSEEEEEEEGGG-HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred HhccCCCEEEEEecchh-HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence 2 35899999999986 4445555555443 47899999999998654
No 77
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=132.77 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+..+. ..+.+++...... ..++....+.+|||||... +. ..+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~~-------~~~~ 100 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD--YD-------RLRP 100 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchh--hh-------HHHH
Confidence 34579999999999999999999988764 2333343333332 2333455799999999432 22 2233
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.++..+|++++|+|+++. +.... .|+..+ .....+.|+++|+||+|+......
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~ 156 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKDKSL 156 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHH-HHHCSSCCEEEEEECGGGGSCHHH
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhhhccchh
Confidence 457899999999999873 33333 343333 333457999999999999876543
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=132.02 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=76.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc-ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
.+..+|+++|.+|+|||||++++++..+.. ..+..+.+.......++.....+.+|||||.... . ..+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~-------~~~~~ 96 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF--R-------SIAKS 96 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC--H-------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch--h-------hhHHH
Confidence 446799999999999999999999887532 1122222222233334444577999999995332 2 22345
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
++..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+.
T Consensus 97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 57789999999999873 4455566655544444579999999999996
No 79
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.71 E-value=2.4e-17 Score=129.78 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=81.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
..+..+|+++|.+|+|||||++++.+..+. ....++++.......+...+..+.+|||||.... ..+ +..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~-------~~~ 74 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAF--TTM-------RAR 74 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSS--SCS-------CCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHH--HHH-------HHH
Confidence 356779999999999999999999988765 3334444433333344556778999999995432 222 124
Q ss_pred HccCccEEEEEEeCCCCchh-HHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+|++++|+|+++.... ....+.... ..+.|+++|+||+|+.+.
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAK---AANVPIIVAINKMDKPEA 122 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGSCCEEEEEETTTSSCS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCCCCEEEEEECccCCcC
Confidence 47889999999999874322 222332222 347899999999999864
No 80
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=7.4e-18 Score=133.52 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=63.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC--CeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+. ....++++.+.....+..+ ...+.+|||||.... . ..+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~~~~ 77 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--R-------TITTAY 77 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh--h-------hhHHHH
Confidence 468999999999999999999977653 2222333333333333333 478999999994321 1 223355
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+.+.
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 7899999999999883 455556666665544567999999999999764
No 81
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.71 E-value=1.7e-16 Score=125.09 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+..+.. +.+|....... ..++....+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD--------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC--------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch--------------h
Confidence 445789999999999999999999988753 22222222222 2333446789999999532 1
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHH---HHhhcccCCCCCEEEEEecCCCC
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEIL---EEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~---~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
.++..+|++++|+|+++. +.....|+ .........+.|+++|+||+|+.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 345679999999999883 44455543 33333223679999999999993
No 82
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=1.9e-17 Score=129.27 Aligned_cols=118 Identities=19% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+. ....+..+........ ++....+.+|||||.... . .....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~-------~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF--H-------ALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh--h-------hhHHH
Confidence 3468999999999999999999988764 2223333333332333 344568999999994321 1 22334
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+|++++|+|+++. +.....++..+......+.|+++|+||+|+.++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 57899999999999873 345555665554433457899999999999764
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.70 E-value=4.3e-17 Score=132.02 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=81.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+..+. ..+.+++......... +....+.+|||||... +... +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~-------~~ 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED--YDRL-------RP 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG--GTTT-------GG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchh--hHHH-------HH
Confidence 45679999999999999999999987763 4455555554444443 3445677999999532 2222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.++..+|++++|+|+++. +.... .++.. +.....+.|+++|+||+|+......
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~ 152 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNTPIILVGTKLDLRDDKDT 152 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHH-HHHHCSSCCEEEEEECHHHHTCHHH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHH-HHHhCCCCCEEEEEechhhccchhh
Confidence 457899999999999983 33343 33333 3333367999999999999876543
No 84
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.1e-17 Score=132.22 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=86.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccc-cCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
....+|+++|.+|+|||||++++.+..+... ....+++..............+.+|||||. .. +...+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~-------~~~~~~~ 91 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ--ER-------YRTITTA 91 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH--HH-------CHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh--HH-------HHHHHHH
Confidence 3456999999999999999999998765321 122233444444455667789999999992 22 1233456
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
++..+|++++|+|+++ ++..+..|+..+......+.|+++|+||+|+...
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 6889999999999987 3455666666665544568999999999999654
No 85
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.7e-17 Score=130.25 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=81.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec--CCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+. ..+.+++.......... ....+.+|||||.... ..+ +..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY--DRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS--TTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcch--hHH-------HHH
Confidence 4468999999999999999999988653 34444443333333333 3478999999995432 222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +.... .|+..+.. ...+.|+++|+||+|+.+..
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhcccc
Confidence 57899999999999884 34444 34444333 23579999999999998753
No 86
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=4.2e-17 Score=131.85 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+.. ...+..+.......+ +.....+.+|||||... +..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER--FRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT--TTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHH--HHHH-------HHH
Confidence 34689999999999999999999887652 223333333333233 33346899999999533 2222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+.+.+
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 57899999999999883 4455566666555445679999999999998653
No 87
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=8.3e-17 Score=128.28 Aligned_cols=117 Identities=21% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec--CCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++++..+. ..+.+++.......+.. ....+.+|||||.... . ..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~-------~~~~ 87 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--S-------AMRD 87 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHH--H-------HHHH
Confidence 34569999999999999999999987653 33444444433333333 3456999999994321 1 2334
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
.++..+|++++|+|+++. +..+..++..+.... ..+.|+++|+||+|+..
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 568899999999999873 344455555443322 24789999999999975
No 88
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.70 E-value=1.6e-16 Score=126.59 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=79.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
...+..+|+++|.+|+|||||++++++..+.. .+.++. ......+. +....+.+|||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPEL--Q--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCH--H---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCCc-ceEEEEEEECCEEEEEEEEECCCChhh--h---------
Confidence 34556799999999999999999999887642 222232 22223333 33467888999995322 1
Q ss_pred HHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCC
Q 025346 189 VRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLI 239 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~ 239 (254)
++..+|++++|+|+++. +..+..|+..+..... .+.|+++|+||+|+.
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 45679999999999983 4555667766655432 578999999999994
No 89
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=4.4e-17 Score=131.50 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=79.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE-EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
...+|+++|.+|+|||||++++.+..+.. ...+.++... .....++....+.+|||||... +..+ +..+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQED--YDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGG--GTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCchh--HHHH-------HHHh
Confidence 34689999999999999999999887642 2222222211 1122333446899999999432 2222 2245
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+..+|++++|+|+++. +......+...+.....+.|+++|+||+|+.....
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 7899999999999873 34442223333333345799999999999987643
No 90
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.70 E-value=9.9e-17 Score=125.43 Aligned_cols=119 Identities=30% Similarity=0.359 Sum_probs=79.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc-
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG- 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~- 193 (254)
..+++++|++|+|||||++++.+..+. +...+++|.......+...+..+.+|||||............. ...++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHH---HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHH---HHHHHh
Confidence 358999999999999999999987654 4556666665555556666789999999997543221111111 11222
Q ss_pred -cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 -~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..++++++|+|+++ ......++..+.. .+.|+++|+||+|+...
T Consensus 79 ~~~~~~~i~v~D~~~-~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 79 NEKPDLVVNIVDATA-LERNLYLTLQLME---MGANLLLALNKMDLAKS 123 (165)
T ss_dssp HHCCSEEEEEEETTC-HHHHHHHHHHHHH---TTCCEEEEEECHHHHHH
T ss_pred cCCCCEEEEEecCCc-hhHhHHHHHHHHh---cCCCEEEEEEchHhccc
Confidence 37999999999987 3334445444433 36899999999998643
No 91
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.1e-17 Score=131.72 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=77.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+.. .+.+++........ ++....+.+|||||.... ... +..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~-------~~~~ 93 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDY--DRL-------RPLS 93 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTC--TTT-------GGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHH--HHH-------HHhh
Confidence 4689999999999999999999887642 22233322222222 333468999999995432 221 2245
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+..+|++++|+|+++. +......+...+.....+.|+++|+||+|+......
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 147 (207)
T 2fv8_A 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHV 147 (207)
T ss_dssp CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccc
Confidence 7899999999999873 344422222333333457999999999999876443
No 92
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=133.56 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++++..+.. ...++.+.......+. +....+.+|||||. ..+... +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 92 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TR 92 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HH
Confidence 345689999999999999999999887652 2223323222222333 33478999999993 222222 33
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +..+..++..+......+.|+++|+||+|+...+
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 146 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGC
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 457899999999999873 3555666666555445689999999999997543
No 93
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=2.5e-17 Score=139.84 Aligned_cols=121 Identities=28% Similarity=0.320 Sum_probs=89.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch----hhhhHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVR 190 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~----~~~~~~~~~~~~ 190 (254)
..+|+++|.+|+|||||+|++++... .+++.+++|.+.....+...+..+.+|||||+.+... ...+...... .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-Y 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-H
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-H
Confidence 46899999999999999999999885 4788999999888888888888999999999765431 1222222111 1
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.....+|++++|+|+++. +....+...+.. .++|+++|+||+|+.+.
T Consensus 81 ~~~~~~d~ii~VvD~~~~-~~~~~~~~~l~~---~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNL-ERNLYLTLQLLE---LGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHTCCSEEEEEEEGGGH-HHHHHHHHHHHH---HTCCEEEEEECHHHHHH
T ss_pred HhhcCCCEEEEEecCCCh-HHHHHHHHHHHh---cCCCEEEEEECccchhh
Confidence 224799999999999873 333333333322 37999999999998654
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=5.8e-17 Score=132.18 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=80.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccC-CCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
....+|+++|.+|+|||||+|++++..+..... ..+.+.... ......+ ..+.+|||||... +..+..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~------ 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV-TFLDDQGNVIKFNVWDTAGQEK--KAVLKD------ 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE-EEEBTTSCEEEEEEEEECSGGG--TSCCCH------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE-EEEeCCCcEEEEEEEecCCchh--hchHHH------
Confidence 345799999999999999999999877542222 222222222 2222222 6799999999532 222222
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.++..+|++++|+|+++. +.....|+..+......+.|+++|+||+|+.+.+++
T Consensus 80 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 135 (218)
T 4djt_A 80 -VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI 135 (218)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C
T ss_pred -HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc
Confidence 346789999999999983 345556666655544566999999999999876443
No 95
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=1.8e-17 Score=132.80 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=80.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ..+.+++......... +....+.+|||||.. .+..+ +.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~ 89 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE--EYDRL-------RP 89 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGTTT-------GG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcH--HHHHH-------hH
Confidence 44579999999999999999999988763 3444454444333333 344567999999943 32222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++..+|++++|+|+++. +..+...+...+.....+.|+++|+||+|+.+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 457899999999999983 33332333333333446799999999999975
No 96
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=130.12 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.....+|+++|.+|+|||||++++.+.... ....++++.+..... +++....+.+|||||.... .. . ..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~---~---~~ 90 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA--GG---W---LR 90 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG--GH---H---HH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc--hh---h---hH
Confidence 344579999999999999999999865443 223344443333332 3344567899999995432 11 1 12
Q ss_pred HHHccCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChH
Q 025346 190 RSAGINADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~ 242 (254)
..++..+|++++|+|+++ ++..+..|+..+..... .+.|+++|+||+|+...+
T Consensus 91 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 146 (195)
T 3cbq_A 91 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 146 (195)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTC
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccC
Confidence 234678999999999987 34566677766554332 479999999999997653
No 97
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=2.2e-16 Score=132.58 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=86.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCC-ceEEEEEEEEecCCeeEEEEecCCCcccchhhh--hHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHML--DSMMMK 187 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~ 187 (254)
+.....+|+++|.+|+|||||+|++++.........+. +|.......+.+.+..+.+|||||+.+.....- ......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999999987543444444 676666667777889999999999765432111 112234
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHH-HHhhcccC--CCCCEEEEEe-cCCCCCh
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHK--DKLPILLVLN-KKDLIKP 241 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~-~~~~~~~~--~~~piivV~n-K~Dl~~~ 241 (254)
.+..++..+|++++|+|+++ +......+ ..+..... ...|+++|+| |+|+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 44556889999999999987 43333322 22222111 1356676666 9999854
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=6.5e-17 Score=128.88 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=83.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+..+....+..+ .....+...+..+.+|||||..... .. +..+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~--~~-------~~~~ 86 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG----VNLETLQYKNISFEVWDLGGQTGVR--PY-------WRCY 86 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT----CCEEEEEETTEEEEEEEECCSSSSC--CC-------CSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc----eEEEEEEECCEEEEEEECCCCHhHH--HH-------HHHH
Confidence 356799999999999999999998877643222112 1122344567899999999964322 11 2234
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~ 241 (254)
+..+|++++|+|+++. +.....++..++... ..+.|+++|+||+|+.+.
T Consensus 87 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 7899999999999874 566666666665532 357999999999999876
No 99
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=5.2e-17 Score=127.99 Aligned_cols=119 Identities=23% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe---cCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
....+|+++|.+|+|||||++++.+..+.. ...+..+.+.....+. .....+.+|||||... + ...+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~-------~~~~ 75 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER--F-------QSLG 75 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH--h-------hhhh
Confidence 345789999999999999999999887642 2222222222233333 3356899999999322 1 1234
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhccc----CCCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDH----KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~----~~~~piivV~nK~Dl~~~ 241 (254)
..++..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 4568899999999999883 345555655544332 267899999999999643
No 100
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=6e-17 Score=130.74 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ....+..+.+.....+. .....+.+|||||... +..+ +.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~ 75 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER--FQSL-------GV 75 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG--GSCS-------CC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH--HHHh-------HH
Confidence 34568999999999999999999988764 22333333443333333 3446899999999432 2222 22
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC----CCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHK----DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~----~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++. +.....|+..+..... .+.|+++|+||+|+...
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 457899999999999873 3445555555443322 46899999999999743
No 101
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=2.8e-17 Score=148.35 Aligned_cols=129 Identities=23% Similarity=0.315 Sum_probs=87.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~ 190 (254)
....+++++|.+|+|||||+|++++.+...+++.+++|.+.....+...+..+.+|||||+..... +.++........
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 345799999999999999999999998777888999999888777777888999999999643221 111222212233
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.++..+|++++|+|++++.......+..... ..+.|+++|+||+|+.+.++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~--~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSCCCT
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHH--HcCCcEEEEEECccCCCcch
Confidence 4577899999999999865544433333222 25789999999999987543
No 102
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.70 E-value=1.3e-17 Score=151.75 Aligned_cols=122 Identities=28% Similarity=0.395 Sum_probs=92.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCc-ccchhhhhHHHHHHHHHHc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII-EKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 193 (254)
+.+|+++|.+|+|||||+|++++.+...++++++||++.....+..++..+.+|||||+. ... ...+.........++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~-~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN-DLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC-TTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch-hhHHHHHHHHHHHHh
Confidence 468999999999999999999998877789999999988877788888999999999986 322 222221123334567
Q ss_pred cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+|++++|+|+++........+.+.+ .+.|+++|+||+|+...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCC
T ss_pred hcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccc
Confidence 889999999999885443322222222 36899999999999754
No 103
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=7.9e-17 Score=131.39 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=83.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcccccc-CCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....++++++|++|+|||||++++.+..+.... .+.+++ ........+.+|||||.... ..... ..+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~--~~~~~---~~~~ 77 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKL--RYKLS---DYLK 77 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE------ETTGGGSSCEEEECCCCGGG--THHHH---HHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE------EEEeeCceEEEEECCCcHHH--HHHHH---HHHH
Confidence 345679999999999999999999987754211 111111 11225678999999996432 22111 1122
Q ss_pred HHccCccEEEEEEeCC---CCchhHHHHHHHhhcc----cCCCCCEEEEEecCCCCChHhHH
Q 025346 191 SAGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~---~~~~~~~~~~~~~~~~----~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.....++++++|+|++ .++.....++..++.. ...+.|+++|+||+|+.....+.
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 2234589999999998 4667777777766543 24679999999999998875544
No 104
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.69 E-value=9e-17 Score=124.99 Aligned_cols=118 Identities=20% Similarity=0.252 Sum_probs=80.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+.. ...+..+.+..... .+.....+.+|||||.. .+..+ +..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE--EFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG--GTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH--hHHHH-------HHH
Confidence 34689999999999999999999877642 22222222222222 23335689999999943 22222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +.....++..+.... .+.|+++|+||+|+.+.+
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCccc
Confidence 47899999999999883 345555655554433 578999999999997643
No 105
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=6.2e-17 Score=131.91 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecC----------CeeEEEEecCCCcccchhhh
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGP----------EYQMILYDTPGIIEKKIHML 181 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~----------~~~~~liDtpG~~~~~~~~~ 181 (254)
...+|+++|.+|+|||||++++++..+. ....+..+.+.... .+... ...+.+|||||. .
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~----- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--E----- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--H-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--H-----
Confidence 3468999999999999999999987653 11112222222111 22222 568999999992 2
Q ss_pred hHHHHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCChH
Q 025346 182 DSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 182 ~~~~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~ 242 (254)
.+...+..++..+|++++|+|+++. +..+..|+..+..... .+.|+++|+||+|+...+
T Consensus 96 --~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~ 157 (217)
T 2f7s_A 96 --RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 157 (217)
T ss_dssp --HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred --hHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc
Confidence 2223455678999999999999873 3445555555444332 678999999999997643
No 106
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.69 E-value=5e-17 Score=128.65 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
+..+|+++|.+|+|||||++++.+..+. ..+.+++...... ..++....+.+|||||... +... +..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED--YDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG--GTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHh--HHHH-------HHH
Confidence 3468999999999999999999987763 3333443333222 2334456788999999533 2222 224
Q ss_pred HccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +.... .++..+.. ...+.|+++|+||+|+.+..
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCH
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHH-hCCCCCEEEEeEcccccccc
Confidence 57899999999999883 33443 34433332 23479999999999997654
No 107
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=130.50 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++++..+. ..+.+|+...... ..+.....+.+|||||... +..+ .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~--------~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT--PRNC--------E 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCc--chhH--------H
Confidence 34569999999999999999999988753 4445555443322 2344457899999999532 2222 2
Q ss_pred HHccCccEEEEEEeCCC--CchhHHHHHHHhhccc---CCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACK--APERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~---~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++ ++..+..|+..+.... ..+.|+++|+||+|+...
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 35788999999999987 3455566666555432 257999999999999654
No 108
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-16 Score=128.03 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE--EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+.. .+.++...... ...+.....+.+|||||.... .. .+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~-------~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF--PA-------MQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC--HH-------HHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHh--HH-------HHH
Confidence 446799999999999999999999877642 22222211112 223344568999999994332 22 233
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhccc--CCCCCEEEEEecCCCCCh
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDH--KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~ 241 (254)
.++..+|++++|+|+++. +.....++..+.... ..+.|+++|+||+|+...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 446779999999999873 334444443333221 246899999999999753
No 109
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=129.05 Aligned_cols=119 Identities=21% Similarity=0.191 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
......+|+++|.+|+|||||++++.+..+ ...+.+|+...........+ ..+.+|||||.... ..+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~------- 84 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF--DKL------- 84 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC--SSS-------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH--HHH-------
Confidence 345567999999999999999999998875 34555555554444444333 57889999996432 222
Q ss_pred HHHHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 189 VRSAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..++..+|++++|+|+++. +.... .|+..+.. ...+.|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCSSSCEEEEEECGGGGGC
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEECHhhhhc
Confidence 22457899999999999873 33443 34444333 2357999999999999753
No 110
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.69 E-value=2.9e-16 Score=125.76 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC------------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------ 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------------------ 162 (254)
....+|+++|.+|+|||||++++++..+. ....+.+........+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 34578999999999999999999998764 22222222233333333222
Q ss_pred ---------eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEE
Q 025346 163 ---------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILL 231 (254)
Q Consensus 163 ---------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piiv 231 (254)
..+.+|||||... +... +..++..+|++++|+|+++. +.....++..+.... +.|+++
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piil 152 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQER--YASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIIL 152 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGG--CTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEE
T ss_pred ccccCccceeEEEEEECCCcHH--HHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEE
Confidence 7899999999432 2222 33457899999999999884 445556665554432 389999
Q ss_pred EEecCCC
Q 025346 232 VLNKKDL 238 (254)
Q Consensus 232 V~nK~Dl 238 (254)
|+||+|+
T Consensus 153 v~NK~D~ 159 (208)
T 3clv_A 153 VANKIDK 159 (208)
T ss_dssp EEECTTC
T ss_pred EEECCCc
Confidence 9999993
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.69 E-value=3e-17 Score=129.14 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecC---CeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+..+|+++|.+|+|||||++++.+..+.. ...+..+.+.....+... ...+.+|||||... +... +
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~ 73 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI--GGKM-------L 73 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT--TCTT-------H
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc--ccch-------h
Confidence 345789999999999999999999877541 112222222233333333 37899999999432 2222 2
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC--CCCC-EEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK--DKLP-ILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~--~~~p-iivV~nK~Dl~~~ 241 (254)
..++..+|++++|+|+++. +.....|+..+..... .+.| +++|+||+|+.+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 3457899999999999883 3445555554433211 2455 8999999999754
No 112
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.69 E-value=2.3e-16 Score=128.82 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
+.....+|+++|.+|+|||||++++.+..+. ..+.+|+...... ..+.....+.+|||||.. .+..+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~------- 91 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSP--YYDNV------- 91 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG--GGTTT-------
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH--hHHHH-------
Confidence 3445679999999999999999999988764 3444444333332 334455789999999943 33222
Q ss_pred HHHHccCccEEEEEEeCCCCc--hh-HHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 189 VRSAGINADCIVVLVDACKAP--ER-IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~--~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+..++..+|++++|+|+++.. .. ...|+..+.. ...+.|+++|+||+|+..
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-YCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH-HCTTSEEEEEEECGGGGG
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhcc
Confidence 234578999999999999843 33 3445444433 346899999999999965
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.7e-16 Score=126.63 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=81.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCc--eEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~t--t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+..+.. ...+.. +.......++.....+.+|||||... +... +..+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER--FRTL-------TPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG--GCCS-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchh--hhhh-------hHHH
Confidence 4689999999999999999999887642 222222 22222233344567899999999432 2222 2345
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhccc-CCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~ 240 (254)
+..+|++++|+|+++. +..+..|+..+.... ..+.|+++|+||+|+..
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 7899999999999874 445566666665543 25789999999999954
No 114
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=4.9e-17 Score=131.10 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEEEEEecC----CeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
...+|+++|.+|+|||||++++.+........+.+|+. +.....+... ...+.+|||||... +...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL---------YKEQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH---------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH---------HHHH
Confidence 34689999999999999999999883221334444443 3333333333 56899999999522 2233
Q ss_pred HHHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccC---CCCCEEEEEecCCCCC
Q 025346 189 VRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHK---DKLPILLVLNKKDLIK 240 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~---~~~piivV~nK~Dl~~ 240 (254)
+..++..+|++++|+|+++. +.....|+..+..... .+.|+++|+||+|+..
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 55668899999999999884 4556666666655444 5799999999999987
No 115
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.69 E-value=1.1e-16 Score=130.87 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=88.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCcc-ccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
......+|+++|.+|+|||||+++++...+ ....+..+++..............+.+|||||. ..+..+.
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~------- 81 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLR------- 81 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCC-------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHH-------
Confidence 334557999999999999999999765553 234556667776666666667788999999994 3333322
Q ss_pred HHHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..++..+|++++|+|+++. +.....|+..+... ..+.|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccc
Confidence 2346799999999999983 44555666655543 357999999999999764
No 116
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=9e-17 Score=125.34 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=74.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
.+|+++|.+|+|||||++++.+.........+ ++....... .+.....+.+|||||..... . .....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~------~~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGDAG--G------WLQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccccc--h------hhhhhhh
Confidence 57999999999999999999977654333222 233333332 33445678999999954321 1 0112235
Q ss_pred cCccEEEEEEeCCC--CchhHHHHHHHhhcccC-CCCCEEEEEecCCCCChH
Q 025346 194 INADCIVVLVDACK--APERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 194 ~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~~ 242 (254)
..+|++++|+|+++ ++.....++..+..... .+.|+++|+||+|+.+.+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 125 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence 66999999999988 34566667766655433 479999999999997543
No 117
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-16 Score=127.89 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=82.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccc--cCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+... ...+.++ .+.....+.+|||||..... .... ..+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~--~~~~---~~~~ 113 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-------ADYDGSGVTLVDFPGHVKLR--YKLS---DYLK 113 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSS--CCHH---HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-------eeecCCeEEEEECCCCchHH--HHHH---HHHH
Confidence 4567999999999999999999998765321 1112221 12256789999999964432 1111 2223
Q ss_pred HHccCccEEEEEEeCC-C--CchhHHHHHHHhhcc----cCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 191 SAGINADCIVVLVDAC-K--APERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~-~--~~~~~~~~~~~~~~~----~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
.....+|++++|+|++ + ++.....++..++.. ...+.|+++|+||+|+.....+.+..+.+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 3356699999999998 4 234444555555432 23579999999999998876655544443
No 118
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.68 E-value=6.4e-16 Score=131.03 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=81.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccC-------CCCceEEEEEEEEecCC--eeEEEEecCCCcccc-----hhh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEKK-----IHM 180 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~-------~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~-----~~~ 180 (254)
..+|+++|.+|+|||||+|++++.+...... .++++.......+...+ ..+.+|||||+.+.. +..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3589999999999999999998877543322 23333333334444433 589999999985432 222
Q ss_pred hhHHHHHHHHHHcc-------------CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 181 LDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 181 ~~~~~~~~~~~~~~-------------~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+......++..++. .+|+++++++.+. +.......+...+.. +.|+++|+||+|+....++..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 22222233333333 3779999997765 555555544444432 799999999999998877655
Q ss_pred HHH
Q 025346 247 KLE 249 (254)
Q Consensus 247 ~~~ 249 (254)
..+
T Consensus 165 ~~~ 167 (274)
T 3t5d_A 165 FKK 167 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 119
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.68 E-value=4.6e-16 Score=131.10 Aligned_cols=127 Identities=21% Similarity=0.286 Sum_probs=89.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||+|++++.....+..++++|...........+..+.+|||||+.+.. .......+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~--~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG--YVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT--EECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc--cchHHHHHHHHHH
Confidence 34678999999999999999999999876677888888777777777888999999999975532 2222222323332
Q ss_pred c--cCccEEEEEEeCCC-CchhHH-HHHHHhhcccCCC--CCEEEEEecCCCCCh
Q 025346 193 G--INADCIVVLVDACK-APERID-EILEEGVGDHKDK--LPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~--~~~d~iv~vid~~~-~~~~~~-~~~~~~~~~~~~~--~piivV~nK~Dl~~~ 241 (254)
+ ..+|++++|+++.. ...... .++..+......+ .|+++|+||+|+.++
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 47899999988765 243333 4444443333322 499999999999643
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=1.6e-16 Score=126.21 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=78.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ..+.++........ .+.....+.+|||||.. .+..+ ..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~ 73 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP--YYDNV-------RP 73 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG--GGTTT-------GG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCCh--hhhhh-------HH
Confidence 34568999999999999999999988764 23333333222222 33445789999999943 22222 22
Q ss_pred HHccCccEEEEEEeCCCC--chhH-HHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 191 SAGINADCIVVLVDACKA--PERI-DEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.++..+|++++|+|+++. +... ..|+..+ .....+.|+++|+||+|+.+
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i-~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH-HHHCTTCEEEEEEECGGGGG
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHH-HHHCCCCCEEEEEEcchhhc
Confidence 357899999999999873 3333 3343333 22345799999999999974
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=1.6e-16 Score=129.07 Aligned_cols=119 Identities=22% Similarity=0.160 Sum_probs=81.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ..+.+++....... .++....+.+|||||.... ..+ +.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~-------~~ 75 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY--SRL-------RP 75 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC--CC---------C
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH--HHH-------HH
Confidence 45579999999999999999999987763 34444443333322 3344568999999995432 222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.++..+|++++|+|+++. +.... .|+..+.. ...+.|+++|+||+|+.+...
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRR-FAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECHHHHTCHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEeCHHhhhCcc
Confidence 457899999999999873 33333 34444332 235799999999999976543
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=3.5e-16 Score=124.83 Aligned_cols=124 Identities=20% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCC-------CCceEEEEEE-----EEecCCeeEEEEecCCCcccchhh
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-------~~tt~~~~~~-----~~~~~~~~~~liDtpG~~~~~~~~ 180 (254)
....+|+++|.+|+|||||++.+.+......... ...|...... ..++....+.+|||||.... ..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~ 89 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY--NA 89 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC--SH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH--HH
Confidence 3456899999999999999977765433211110 1112211111 12234567999999995432 22
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCC--------chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKA--------PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~--------~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
.+..++..+|++++|+|+++. +..+..|+..+ +....+.|+++|+||+|+.+....++
T Consensus 90 -------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~~~~~~~~ 155 (198)
T 3t1o_A 90 -------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLPDALPVEM 155 (198)
T ss_dssp -------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTSTTCCCHHH
T ss_pred -------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcccccCHHH
Confidence 233568999999999999842 23333444443 22346799999999999976533333
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.67 E-value=1.5e-16 Score=134.76 Aligned_cols=122 Identities=35% Similarity=0.408 Sum_probs=89.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+++++|++|+|||||+|++++..+ .++..+++|.......+...+..+.+|||||+...............+ ....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhcc
Confidence 46899999999999999999999877 478889999888888888888899999999976544333332221111 1237
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++.. ....++..+... ...|+++|+||+|+.+.
T Consensus 81 ~~d~vi~v~D~~~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 81 NADVIVDIVDSTCLM-RNLFLTLELFEM--EVKNIILVLNKFDLLKK 124 (271)
T ss_dssp CCSEEEEEEEGGGHH-HHHHHHHHHHHT--TCCSEEEEEECHHHHHH
T ss_pred CCcEEEEEecCCcch-hhHHHHHHHHhc--CCCCEEEEEEChhcCcc
Confidence 899999999998842 333333333321 23899999999998654
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.3e-17 Score=133.23 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+.... .+..+.......+. .....+.+|||||... +..+ +..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQER--YRAI-------TSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTT--TTCC-------CGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccc--hhhh-------HHH
Confidence 3468999999999999999999988765322 22222222222233 3346899999999532 2222 234
Q ss_pred HccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
++..+|++++|+|+++. +..+..|+..+......+.|+++|+||+|+...+
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~ 134 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 57899999999999873 4555566666555445679999999999997643
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=7.1e-18 Score=135.92 Aligned_cols=120 Identities=20% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+.. ...++++.......+. .....+.+|||||.... ..+ +.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~~~-------~~ 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--RTI-------TS 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC--CCC-------SC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH--HHH-------HH
Confidence 345799999999999999999999877542 2223333333333333 33468999999994332 221 22
Q ss_pred HHccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +..+..++..+......+.|+++|+||+|+.+.+
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 347889999999999884 3456667766665555689999999999997653
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=2.6e-16 Score=133.39 Aligned_cols=120 Identities=26% Similarity=0.361 Sum_probs=85.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (254)
..+|+++|.+|+|||||+|++.+.... ++++|++|.....+.+.. +..+.+|||||.........+......+.. ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cC
Confidence 458999999999999999999987643 778888888777777776 788999999996543322222222111111 14
Q ss_pred CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 195 ~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+|++++|+|+++. +....+...+.. .+.|+++|+||+|+...
T Consensus 80 ~~d~vi~V~D~t~~-e~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 80 RADSILNVVDATNL-ERNLYLTTQLIE---TGIPVTIALNMIDVLDG 122 (272)
T ss_dssp CCSEEEEEEEGGGH-HHHHHHHHHHHH---TCSCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCch-HhHHHHHHHHHh---cCCCEEEEEEChhhCCc
Confidence 79999999999873 333334433332 47899999999998643
No 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=5e-16 Score=126.89 Aligned_cols=121 Identities=22% Similarity=0.222 Sum_probs=79.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+........+++++.+.... .+++....+.+|||+|.... .. .....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-----~~---~l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NE---WLHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-----HH---HHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-----hh---hHHHH
Confidence 3468999999999999999999976543333334333332222 23334456789999994321 11 11234
Q ss_pred HccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 192 AGINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
++..++++++|+|+++ ++.....|+..+.... ..++|+++|+||+|+...+
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r 161 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR 161 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCc
Confidence 5788999999999987 4555666665554432 3579999999999997543
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=1.8e-16 Score=143.74 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=91.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch--hhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~ 190 (254)
....+++++|.+|+|||||+|++++.+...+++.+++|.+.....+...+..+.+|||||+..... ...+........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 456799999999999999999999887666888999998876666777788999999999754221 111222222334
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|++++.......+...+.. .+.|+++|+||+|+.+.+
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCC
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCc
Confidence 46788999999999999777666655554443 568999999999998653
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=134.20 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
.+..+|+++|.+|+|||||++++.+..+.. ..| |.......+...+..+.+|||||. ..+..+ +..+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 229 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ--DKIRPL-------WRHY 229 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHH
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCC--HhHHHH-------HHHH
Confidence 345689999999999999999999887642 222 333344456677899999999993 333332 3345
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhccc-CCCCCEEEEEecCCCCChHhHHH
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
+..+|++|+|+|+++ ++.....++..++... ..++|+++|+||+|+.+.....+
T Consensus 230 ~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 286 (329)
T 3o47_A 230 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 286 (329)
T ss_dssp HTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred hccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH
Confidence 789999999999976 4566666666655433 35799999999999987644433
No 130
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=3.3e-16 Score=127.16 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE--ecCCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
...+|+++|.+|+|||||++++.+..+. ..+.++........+ +.....+.+|||||.. .+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP--YYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG--GGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcH--hhhHH-------HHh
Confidence 4568999999999999999999988764 233333333222222 3445789999999943 22222 224
Q ss_pred HccCccEEEEEEeCCCC--chhH-HHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKA--PERI-DEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~--~~~~-~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
++..+|++++|+|+++. +... ..|+..+. ....+.|+++|+||+|+..
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH-HHCTTCEEEEEEECGGGGG
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEechhhcc
Confidence 57899999999999873 3333 34444333 2335799999999999974
No 131
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.65 E-value=5.1e-17 Score=128.30 Aligned_cols=119 Identities=20% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+|+++|.+|+|||||++++.+..+. ..+.+++...... ..++....+.+|||||... +... +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~ 74 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED--YNRL-------RP 74 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CT--TTTT-------GG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh--hhhh-------HH
Confidence 44679999999999999999999987753 3333443322211 1223345678999999532 2222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.++..+|++++|+|+++. +.... .|+..+.. ...+.|+++|+||+|+.+...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECHHHHTCHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEechhhhcCcc
Confidence 457889999999999873 33443 34433332 235799999999999976554
No 132
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.64 E-value=9.3e-16 Score=121.99 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=75.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCce-EEEEEEEE-----ecCCeeEEEEecCCCcccchhhhhHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt-~~~~~~~~-----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 189 (254)
.+++++|++|+|||||++++.+........+.+|. .+...... +.....+.+|||||. ..+..+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~------- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTH------- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTS-------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhh-------
Confidence 58999999999999999999985322122222222 22222221 124668999999993 3233322
Q ss_pred HHHccCccEEEEEEeCCCCc---hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 190 ~~~~~~~d~iv~vid~~~~~---~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
..++..++++++|+|+++.. ..+..|+..+... ..+.|+++|+||+|+.+...+.
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~ 131 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRK 131 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHH
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhH
Confidence 23456789999999998753 4455666554432 3578999999999998876654
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=1.4e-16 Score=142.64 Aligned_cols=127 Identities=26% Similarity=0.389 Sum_probs=82.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCe-eEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.....+|+++|.+|+|||||+|++++..+..++..+++|.+.........+. .+.+|||||+.+.. .+.......+.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~--~l~~~~~~~~~ 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG--ELGRLRVEKAR 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCC--TTCCCCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc--chhHHHHHHHH
Confidence 3456799999999999999999999998876778888887766665555444 89999999976532 22212224455
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
.++..+|++++|+|+ ........++..+.. .+.|+++|+||+|+...+..
T Consensus 109 ~~l~~aD~vllVvD~-~~~~~~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 109 RVFYRADCGILVTDS-APTPYEDDVVNLFKE---MEIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHHTSCSEEEEECSS-SCCHHHHHHHHHHHH---TTCCEEEECCCCTTTTCCCT
T ss_pred HHHhcCCEEEEEEeC-CChHHHHHHHHHHHh---cCCCEEEEEeCcCCCCccHH
Confidence 678899999999999 333444455544433 27899999999999876544
No 134
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=4.1e-15 Score=127.04 Aligned_cols=129 Identities=21% Similarity=0.298 Sum_probs=82.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc-----cccCCCC----------------------ceEE-------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH------------- 152 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~~~~~~----------------------tt~~------------- 152 (254)
...++|+++|.+|+|||||+|++++.++. .++..|+ +|.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998864 2333343 2211
Q ss_pred -----------EEEEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHccCccEEE-EEEeCCCCchhHHH-H
Q 025346 153 -----------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (254)
Q Consensus 153 -----------~~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~iv-~vid~~~~~~~~~~-~ 215 (254)
............+.+|||||+.... .+.....+...+..++..++.++ +|+|++........ .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000111124689999999986532 12223344455666777887666 79999876544332 1
Q ss_pred HHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 216 ~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+...+. ..+.|+++|+||+|+.++..
T Consensus 184 ~~~~~~--~~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 184 IAKEVD--PQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp HHHHHC--TTCSSEEEEEECGGGSCTTC
T ss_pred HHHHhC--CCCCeEEEEEEccccCCCCc
Confidence 222232 34689999999999987543
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=6.4e-16 Score=139.52 Aligned_cols=128 Identities=27% Similarity=0.348 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccch---hhhhHHHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVR 190 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~---~~~~~~~~~~~~ 190 (254)
...+++++|++|+|||||+|++++.....+++.+++|++...+.+...+..+.+|||||+..... +..+........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45799999999999999999999998777899999999888777777888999999999732211 000000001123
Q ss_pred HHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.++..+|++++|+|+++........+...+. ..+.|+++|+||+|+...+.
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~--~~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLME--RRGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSTTGG
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCCchh
Confidence 4567899999999998865544444444333 24789999999999987543
No 136
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.63 E-value=1.5e-15 Score=131.05 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=76.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
|++++|.+|+|||||++++.++-..........|.......+ ....++++|||||........+ ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l------~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSY------DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSH------HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchhh------hhhhhccCC
Confidence 589999999999999998876543321111222211111122 2357899999999443210111 123568999
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhc---ccCCCCCEEEEEecCCCCChH
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~---~~~~~~piivV~nK~Dl~~~~ 242 (254)
+++|+|+|+++.+.....++..++. ...+++|+++|+||+|+.+++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 9999999999864444444433322 224689999999999998754
No 137
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=2.4e-15 Score=137.73 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 193 (254)
+..+++++|.+|+|||||++++.+.++. ...+ |.......+...+..+.+|||||... +..+ +..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDK--IRPL-------WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEESSSCEEEEEEECCCGG--GSGG-------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEeCCEEEEEEECCCcHH--HHHH-------HHHHh
Confidence 3469999999999999999999988753 2222 44445556777889999999999433 2222 34568
Q ss_pred cCccEEEEEEeCCCC--chhHHHHHHHhhcccC-CCCCEEEEEecCCCCCh
Q 025346 194 INADCIVVLVDACKA--PERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (254)
Q Consensus 194 ~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~-~~~piivV~nK~Dl~~~ 241 (254)
..+|++|+|+|+++. +.....++..++.... .++|+++|+||+|+...
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 899999999999884 5566667777655432 57999999999999765
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=4.6e-16 Score=135.88 Aligned_cols=123 Identities=25% Similarity=0.269 Sum_probs=89.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccc--hhhhhHHHHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~--~~~~~~~~~~~~~~~ 192 (254)
.+|+++|.+|+|||||+|+++..+.. +.+++++|.......+...+ ..+.+|||||+.+.. ...+. ..+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~----~~fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLG----HQFLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTH----HHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhH----HHHHHH
Confidence 46899999999999999999987654 57888888777776666654 789999999965421 11121 233445
Q ss_pred ccCccEEEEEEeCCC-----CchhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHh
Q 025346 193 GINADCIVVLVDACK-----APERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 193 ~~~~d~iv~vid~~~-----~~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~ 243 (254)
+..++++++|+|+++ +.+....+..++.... ..++|+++|+||+|+...++
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e 291 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE 291 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH
Confidence 677999999999975 3344555555554432 24789999999999987654
No 139
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=4.3e-15 Score=117.91 Aligned_cols=122 Identities=26% Similarity=0.283 Sum_probs=74.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh--hhhHHHHHHHH---
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNVR--- 190 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~--- 190 (254)
.+|+++|.+|+|||||++++.+..+. ....+++|......... .+.+|||||+.....- .....+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999998764 45556666544333322 7899999996432110 00111111222
Q ss_pred HH-ccCccEEEEEEeCCCCchhHHHHHHH--------hhcc-cCCCCCEEEEEecCCCCChH
Q 025346 191 SA-GINADCIVVLVDACKAPERIDEILEE--------GVGD-HKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~-~~~~d~iv~vid~~~~~~~~~~~~~~--------~~~~-~~~~~piivV~nK~Dl~~~~ 242 (254)
.. ...++++++|+|..........|... +... ...+.|+++|+||+|+....
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 22 55677888888876522211222211 1111 12579999999999998764
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=3.5e-15 Score=131.40 Aligned_cols=125 Identities=22% Similarity=0.201 Sum_probs=81.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
+.++++|.+|+|||||+|++.+... .+.+.+++|.+.....+..++..+.+|||||+.......+-..+ ..+...+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~ 257 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKY 257 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHh
Confidence 3599999999999999999999876 36778888877777777777789999999997543222222223 334456889
Q ss_pred ccEEEEEEeCCCCch---hHHHHHHHhhccc-CCCCCEEEEEecCCCCChH
Q 025346 196 ADCIVVLVDACKAPE---RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 196 ~d~iv~vid~~~~~~---~~~~~~~~~~~~~-~~~~piivV~nK~Dl~~~~ 242 (254)
+|++++|+|+++... .....+...+... ..+.|+++|+||+|+.+..
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 999999999987541 1111222233222 2568999999999998753
No 141
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=4.1e-15 Score=137.55 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=88.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc--cccCCCCceEEEEEEEEe-------------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICS------------------------------- 159 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~--~~~~~~~tt~~~~~~~~~------------------------------- 159 (254)
...++|+++|.+|+|||||+|++++.++. .++..+.|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 34679999999999999999999998875 466666665432111100
Q ss_pred -----cCC---eeEEEEecCCCcccchhhhhHH--HHHHHHHHccCccEEEEEEeCCCC-c-hhHHHHHHHhhcccCCCC
Q 025346 160 -----GPE---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-P-ERIDEILEEGVGDHKDKL 227 (254)
Q Consensus 160 -----~~~---~~~~liDtpG~~~~~~~~~~~~--~~~~~~~~~~~~d~iv~vid~~~~-~-~~~~~~~~~~~~~~~~~~ 227 (254)
... ..+.+|||||+.......+... +......++..+|++++|+|+++. . .....++.. +. ..+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~-l~--~~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGA-LR--GHED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHH-TT--TCGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHH-HH--hcCC
Confidence 000 3689999999865322111111 223444567889999999999873 3 333444433 32 2357
Q ss_pred CEEEEEecCCCCChHhHHHHHHHH
Q 025346 228 PILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 228 piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
|+++|+||+|+..++++.+..+.+
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHHh
Confidence 999999999999988876655443
No 142
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.60 E-value=6.7e-15 Score=126.75 Aligned_cols=129 Identities=24% Similarity=0.320 Sum_probs=79.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcc-----ccccCCCC---ceEE--------------------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKPQ---TTRH-------------------------------- 152 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~-----~~~~~~~~---tt~~-------------------------------- 152 (254)
...++|+++|.+|+|||||+|++++.++ ..++..|+ +++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4457899999999999999999999876 22333331 1111
Q ss_pred ------EE-------------EEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHccCccEEEEEEeCC-CC
Q 025346 153 ------RI-------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDAC-KA 208 (254)
Q Consensus 153 ------~~-------------~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~iv~vid~~-~~ 208 (254)
.. .......+..+.+|||||+.... ...+...+...+..++..+|++++|+|++ ..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 00122345689999999986422 12334445566777889999999999974 33
Q ss_pred ch-hHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 209 PE-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 209 ~~-~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
.. .....+...+. ..+.|+++|+||+|+.....
T Consensus 182 ~~~~~~~~i~~~~~--~~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 182 LANSDALQLAKEVD--PEGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp STTCSHHHHHHHHC--SSCSSEEEEEECTTSSCSSC
T ss_pred hhhhHHHHHHHHhC--CCCCcEEEEEcCcccCCcch
Confidence 32 11112222233 24689999999999986544
No 143
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.39 E-value=7.3e-17 Score=130.33 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=79.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEE--EecCCeeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
.+..+|+++|.+|+|||||++++.+..+. ..+.+++....... .++....+.+|||||.... . ..+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~-------~~~~ 96 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY--D-------RLRP 96 (204)
Confidence 45678999999999999999999987653 33334443333322 2344567789999994321 1 2233
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +.... .++.. +.....+.|+++|+||+|+.+..
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~-l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 457889999999999873 44443 33333 33333479999999999998653
No 144
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=3.8e-15 Score=128.69 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=82.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 190 (254)
....+++++|.+|+|||||++++.+..+ ...+.+++.......+...+ ..+.+|||||.... ... ..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~-------~~ 221 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY--DRL-------RP 221 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--TTT-------GG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh--hHH-------HH
Confidence 3457899999999999999999998776 34555666655554444443 45669999995332 222 23
Q ss_pred HHccCccEEEEEEeCCCC--chhHH-HHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 191 SAGINADCIVVLVDACKA--PERID-EILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 191 ~~~~~~d~iv~vid~~~~--~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
.++..+|++++|+|+++. +.... .|+..+.. ...+.|+++|+||+|+....
T Consensus 222 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDK 275 (332)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSCEEEEEECHHHHTCH
T ss_pred HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-hCCCCcEEEEEEchhccccc
Confidence 457899999999999883 33333 23333332 33489999999999997643
No 145
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.59 E-value=1.5e-15 Score=121.86 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=75.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE--EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+|+++|.+|+|||||++++.+........+++++.+.... .+++....+.+|||+|.... ...+. ..+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~~-------~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWLH-------DHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTTG-------GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhHH-------Hhh
Confidence 468999999999999999999964432233333333222222 33344456789999995431 11111 223
Q ss_pred ccCccEEEEEEeCCC--CchhHHHHHHHhhcc-cCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACK--APERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~--~~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~ 241 (254)
++.++++++|+|+++ ++.....++..+... ...+.|+++|+||+|+...
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX 129 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence 567899999999987 445555665544432 2357899999999999754
No 146
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3e-15 Score=131.91 Aligned_cols=121 Identities=24% Similarity=0.267 Sum_probs=91.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (254)
.+|+++|.||+|||||+|++++.+. .++++|+||.+++.+.+...+.+++++||||+....... .....++...++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~--~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG--RGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh--hHHHHHHHHHHHh
Confidence 4799999999999999999999874 489999999999999999999999999999987653222 1122556677889
Q ss_pred ccEEEEEEeCCCCchhHHHHHHHhhcc--cCCCCCEEEEEecCCCC
Q 025346 196 ADCIVVLVDACKAPERIDEILEEGVGD--HKDKLPILLVLNKKDLI 239 (254)
Q Consensus 196 ~d~iv~vid~~~~~~~~~~~~~~~~~~--~~~~~piivV~nK~Dl~ 239 (254)
+|++++|+|++++.........++... ...+.|.++++||+|..
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999998654443332222111 11357888999999973
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.59 E-value=2.1e-14 Score=129.57 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=82.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCcccc------------------------------ccCCCCceEEEEEEEEecC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGP 161 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~ 161 (254)
.....+++++|.+++|||||+++++...... ....++.|.+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3455799999999999999999996542111 1122567777777777888
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCch--------hHHHHHHHhhcccCCCCC-EEEE
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--------RIDEILEEGVGDHKDKLP-ILLV 232 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~--------~~~~~~~~~~~~~~~~~p-iivV 232 (254)
+..+.+|||||+.+ +...+...+..+|++++|+|++++.. ...+.+.. .. ..++| +++|
T Consensus 94 ~~~~~iiDTPGh~~---------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~--~~~v~~iIvv 161 (439)
T 3j2k_7 94 KKHFTILDAPGHKS---------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AK--TAGVKHLIVL 161 (439)
T ss_pred CeEEEEEECCChHH---------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HH--HcCCCeEEEE
Confidence 88999999999432 23445566788999999999988542 22232222 22 23566 9999
Q ss_pred EecCCCCC
Q 025346 233 LNKKDLIK 240 (254)
Q Consensus 233 ~nK~Dl~~ 240 (254)
+||+|+..
T Consensus 162 iNK~Dl~~ 169 (439)
T 3j2k_7 162 INKMDDPT 169 (439)
T ss_pred eecCCCcc
Confidence 99999964
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.57 E-value=1.1e-14 Score=132.91 Aligned_cols=122 Identities=23% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc----c--ccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK----L--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~----~--~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 187 (254)
+..+++++|..++|||||++++.+.. . ......+++|.+.....+..++..+.+|||||+ ..+..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh---------~~~~~ 88 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH---------ADLIR 88 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH---------HHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh---------HHHHH
Confidence 45689999999999999999999876 1 112334455555444445557789999999994 22335
Q ss_pred HHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHH
Q 025346 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (254)
Q Consensus 188 ~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~ 246 (254)
.+...+..+|++++|+|++++..........++.. .++|+++|+||+|+.+++....
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~ 145 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKR 145 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHH
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHH
Confidence 56677899999999999998654433322223332 3688899999999998655443
No 149
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.9e-15 Score=137.19 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=81.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccC------------------------------CCCceEEEEEEEEecC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGP 161 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~------------------------------~~~tt~~~~~~~~~~~ 161 (254)
.....+|+++|.+++|||||++++++........ .+++|.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3456799999999999999999999764321110 2456666555667778
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-------chhHHHHHHHhhcccCCC-CCEEEEE
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVL 233 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-------~~~~~~~~~~~~~~~~~~-~piivV~ 233 (254)
+..+.||||||+.. +...+...+..+|++|+|+|++++ ..........+... .+ .|+++|+
T Consensus 244 ~~~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVv 312 (611)
T 3izq_1 244 RANFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAM 312 (611)
T ss_dssp SCEEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEE
T ss_pred CceEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEE
Confidence 88999999999643 224455668899999999999863 11122222222222 23 3599999
Q ss_pred ecCCCCC
Q 025346 234 NKKDLIK 240 (254)
Q Consensus 234 nK~Dl~~ 240 (254)
||+|+.+
T Consensus 313 NKiDl~~ 319 (611)
T 3izq_1 313 NKMDNVD 319 (611)
T ss_dssp ECTTTTT
T ss_pred ecccccc
Confidence 9999987
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.56 E-value=6.8e-15 Score=135.38 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=81.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccc---------------------ccCCCCceEEEEEEEEecCCeeEEEEecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------------VTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~---------------------~~~~~~tt~~~~~~~~~~~~~~~~liDtpG 172 (254)
+.++++++|.+|+|||||+++++...... ....++.|.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 35689999999999999999997211000 001123333333445667789999999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+.+.. ..+..++..+|++|+|+|++++.......+..... ..++|+++|+||+|+...
T Consensus 92 ~~df~---------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~--~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT---------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCR--LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC---------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHH--TTTCCEEEEEECTTSCCS
T ss_pred chhHH---------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEeCCCCccc
Confidence 75543 33556688999999999999866544433333333 347899999999999754
No 151
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.54 E-value=2.1e-14 Score=128.18 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=80.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEE------EE--------E-----ecCCeeEEEEecCC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL------GI--------C-----SGPEYQMILYDTPG 172 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~------~~--------~-----~~~~~~~~liDtpG 172 (254)
..+..+|+++|.+++|||||++++++........+..++..... .. . ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 34567999999999999999999998543211111111100000 00 0 01126799999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc--hhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHH
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEV 250 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~--~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~ 250 (254)
..+. ...+...+..+|++++|+|++++. ....+++.. +... ...|+++|+||+|+.+.++..+..+.
T Consensus 85 h~~~---------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~-~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~ 153 (403)
T 3sjy_A 85 HEVL---------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVA-LGII-GVKNLIIVQNKVDVVSKEEALSQYRQ 153 (403)
T ss_dssp CGGG---------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred cHHH---------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHH-HHHc-CCCCEEEEEECccccchHHHHHHHHH
Confidence 5322 244556678999999999999853 334444433 2222 22589999999999988765544443
Q ss_pred H
Q 025346 251 T 251 (254)
Q Consensus 251 ~ 251 (254)
+
T Consensus 154 i 154 (403)
T 3sjy_A 154 I 154 (403)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.54 E-value=1.9e-14 Score=131.33 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=79.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc------------------------------cccCCCCceEEEEEEEEecCC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPE 162 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~------------------------------~~~~~~~tt~~~~~~~~~~~~ 162 (254)
....+++++|.+++|||||++++++.... .....++.|.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 34568999999999999999999754110 011223556555556677788
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-------chhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-------~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
..+.+|||||+.+. ......++..+|++++|+|++++ ..........+.... ...|+++|+||
T Consensus 111 ~~~~iiDTPG~~~f---------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK 180 (483)
T 3p26_A 111 ANFTIVDAPGHRDF---------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNK 180 (483)
T ss_dssp CEEEEECCCCCGGG---------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEEC
T ss_pred ceEEEEECCCcHHH---------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEEC
Confidence 89999999996432 24455668899999999999884 222233322223222 22579999999
Q ss_pred CCCCC
Q 025346 236 KDLIK 240 (254)
Q Consensus 236 ~Dl~~ 240 (254)
+|+.+
T Consensus 181 ~Dl~~ 185 (483)
T 3p26_A 181 MDNVD 185 (483)
T ss_dssp GGGGT
T ss_pred cCccc
Confidence 99987
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=5.4e-14 Score=126.70 Aligned_cols=115 Identities=23% Similarity=0.213 Sum_probs=75.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc----------ccCCC----------------------CceEEEEEEEEecCC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKP----------------------QTTRHRILGICSGPE 162 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~----------~~~~~----------------------~tt~~~~~~~~~~~~ 162 (254)
..+++++|..++|||||++++++..... .+..+ +.|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4689999999999999999998653111 11112 223333334456677
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC-CEEEEEecCCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIK 240 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~-piivV~nK~Dl~~ 240 (254)
..+.+|||||+.+.. ..+..++..+|++++|+|++++.......+..+.... +. |+++|+||+|+.+
T Consensus 104 ~~~~iiDtpGh~~f~---------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHEQYT---------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSGGGH---------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChHHHH---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 899999999954321 2334567899999999999986543332222223222 34 6999999999986
No 154
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.54 E-value=6.6e-14 Score=123.11 Aligned_cols=129 Identities=21% Similarity=0.253 Sum_probs=81.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEE-----------------------------------------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~----------------------------------------- 152 (254)
..+.|+++|.+|+|||||+|++++..+....... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 4459999999999999999999998763222111 1100
Q ss_pred --------------EEEEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHH
Q 025346 153 --------------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE 214 (254)
Q Consensus 153 --------------~~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~ 214 (254)
............+.+|||||+.... ..............++..+|++++|+|.++.......
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0011112234579999999987642 1223334446667788999999999987653222122
Q ss_pred HHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 215 ILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 215 ~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++.........+.|+++|+||+|+.++..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcc
Confidence 22222222235689999999999987543
No 155
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.54 E-value=6.3e-14 Score=112.68 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=76.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEe--cCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++.+..+... ..+..+.....+.+. +....+.+|||||.. .+..+. ..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~--~~~~~~-------~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE--RYRRIT-------SAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGG--GTTCCC-------HHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCch--hhhhhh-------HHH
Confidence 35899999999999999999998876422 223222223333333 334578899999943 222222 233
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..++++++|+|+++. +.....++..+......+.|+++|+||+|+.+.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 5789999999999873 334445554443333357899999999999753
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.52 E-value=1.1e-13 Score=123.36 Aligned_cols=114 Identities=19% Similarity=0.164 Sum_probs=78.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcccc---------------ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 179 (254)
..+++++|..++|||||++++++..... .....+.|.......+...+..+.+|||||+.+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH----
Confidence 3589999999999999999998641100 001234455544445566778999999999422
Q ss_pred hhhHHHHHHHHHHccCccEEEEEEeCCCCchhH-HHHHHHhhcccCCCCC-EEEEEecCCCCC
Q 025346 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVGDHKDKLP-ILLVLNKKDLIK 240 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~~~~~p-iivV~nK~Dl~~ 240 (254)
+.......+..+|++++|+|++++.... .+.+ ..+.. .++| +++|+||+|+..
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCS
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCC
Confidence 2344556788999999999999865433 3333 22322 3678 789999999985
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.51 E-value=3.8e-14 Score=126.60 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=79.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC--------ccccc--c------CCCCceEEEEEEEEecCCeeEEEEecCCCccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~--------~~~~~--~------~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~ 176 (254)
....+++++|.+++|||||++++++. .+... . ...+.|.......+...+..+.+|||||+.+.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34568999999999999999999873 11000 0 02344444444456667789999999996532
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhH-HHHHHHhhcccCCCCC-EEEEEecCCCCC
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVGDHKDKLP-ILLVLNKKDLIK 240 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~-~~~~~~~~~~~~~~~p-iivV~nK~Dl~~ 240 (254)
...+...+..+|++++|+|++++.... .+++. .... .++| +++|+||+|+..
T Consensus 89 ---------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~-~~~~--~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 89 ---------IKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ--VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ---------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGCC
T ss_pred ---------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH--cCCCEEEEEEECccccC
Confidence 233445678999999999998865433 33333 2322 3678 899999999985
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=8.6e-14 Score=122.48 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=69.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCC--------CCceEEEEEEEEecCC--eeEEEEecCCCccc-----chh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~--------~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~-----~~~ 179 (254)
..+|+++|++|+|||||+|++++......... ++.+.......+...+ ..+.+|||||+.+. .+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 45799999999999999999887643322211 1111122222222233 47999999998543 222
Q ss_pred hhhHHHHHHHHHHcc-------------CccEEEEEEeC-CCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~-------------~~d~iv~vid~-~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.+.......+..++. .+++++|+++. ..+....+..+...+ ..+.|+++|+||+|+...+++.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 333322222223322 23578888876 456666654333333 3578999999999999988776
Q ss_pred H
Q 025346 246 K 246 (254)
Q Consensus 246 ~ 246 (254)
.
T Consensus 194 ~ 194 (361)
T 2qag_A 194 R 194 (361)
T ss_dssp H
T ss_pred H
Confidence 5
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=2e-13 Score=110.25 Aligned_cols=128 Identities=23% Similarity=0.292 Sum_probs=74.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc-cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhh-hhHHH---
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMM--- 185 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~--- 185 (254)
+..++.+++++|++|+|||||+|++++.. ...+.+.++++......... + .+.+|||||+....... ....+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 44567789999999999999999999876 33344555655532222222 2 68899999975321100 00111
Q ss_pred HHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 186 ~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
...+......++++++++|++.........+...+. ..+.|+++|+||+|+.+..+
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV--DSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH--HTTCCEEEEEECGGGSCHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEecccCCCchh
Confidence 112222246789999999998865443333333332 24689999999999998654
No 160
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.50 E-value=1.1e-13 Score=121.53 Aligned_cols=129 Identities=21% Similarity=0.260 Sum_probs=77.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc-----cccCCCC----------------------ceEE-------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH------------- 152 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~~~~~~----------------------tt~~------------- 152 (254)
...++|+++|.+|+|||||+|++++.++. .++..|. +|..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44578999999999999999999998764 2333333 1110
Q ss_pred -----------EEEEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHccCc-cEEEEEEeCCCCchhHHHH-
Q 025346 153 -----------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINA-DCIVVLVDACKAPERIDEI- 215 (254)
Q Consensus 153 -----------~~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~~~~-d~iv~vid~~~~~~~~~~~- 215 (254)
............+.+|||||+.... .......+......++..+ ++|++|+|++.........
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001111224679999999986532 1222223334444555444 5666677777655433321
Q ss_pred HHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 216 ~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+...+. ..+.|+++|+||+|+.++..
T Consensus 189 i~~~~~--~~~~~~i~V~NK~Dl~~~~~ 214 (353)
T 2x2e_A 189 VAKEVD--PQGQRTIGVITKLDLMDEGT 214 (353)
T ss_dssp HHHHHC--TTCTTEEEEEECGGGSCTTC
T ss_pred HHHHhC--cCCCceEEEeccccccCcch
Confidence 222222 35789999999999986543
No 161
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.50 E-value=1.4e-13 Score=126.67 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=78.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcccc---------------ccC------CCCceEEEEEEEEecCCeeEEEEecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~---------------~~~------~~~tt~~~~~~~~~~~~~~~~liDtpG 172 (254)
+..+++++|.+|+|||||+++++...... +.+ ..+.|.......+.+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35689999999999999999998632110 000 111222112234556788999999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+.+.. ..+..++..+|++|+|+|++++.......+..... ..++|+++|+||+|+...+
T Consensus 92 ~~df~---------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~--~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFS---------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCC---------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT--TTTCCEEEEEECTTSCCSC
T ss_pred ChhHH---------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH--HcCCCEEEEEcCcCCcccc
Confidence 75432 23445688999999999999876554443333333 3478999999999998653
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.49 E-value=6.7e-14 Score=126.13 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--ccc----------------------------ccCCCCceEEEEEEEEecCCe
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LSI----------------------------VTNKPQTTRHRILGICSGPEY 163 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--~~~----------------------------~~~~~~tt~~~~~~~~~~~~~ 163 (254)
...+++++|..++|||||+++++... +.. .....++|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45689999999999999999998641 110 011345666555556777888
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-------chhHHHHHHHhhcccCCCCCEEEEEecC
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-------~~~~~~~~~~~~~~~~~~~piivV~nK~ 236 (254)
.+.+|||||+.+. ...+..++..+|++++|+|++++ +.............. ...|+++|+||+
T Consensus 85 ~~~iiDtpG~~~f---------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~ 154 (435)
T 1jny_A 85 FFTIIDAPGHRDF---------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKM 154 (435)
T ss_dssp EEEECCCSSSTTH---------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECG
T ss_pred EEEEEECCCcHHH---------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCCeEEEEEEcc
Confidence 9999999996442 23355678999999999999985 221222222222211 123699999999
Q ss_pred CCCC
Q 025346 237 DLIK 240 (254)
Q Consensus 237 Dl~~ 240 (254)
|+.+
T Consensus 155 Dl~~ 158 (435)
T 1jny_A 155 DLTE 158 (435)
T ss_dssp GGSS
T ss_pred cCCC
Confidence 9987
No 163
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=6.7e-14 Score=124.56 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=48.4
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec---------------------C---CeeEEEEecCC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~~~liDtpG 172 (254)
+++++|.+|+|||||+|++++.+ ..++++|++|.....+.... . ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 68999999999999999999988 55788998887666554210 1 35799999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA 208 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~ 208 (254)
+..... ........+...++.+|++++|+|+++.
T Consensus 81 ~~~~a~--~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAH--EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchh--hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754211 1111123333557899999999999774
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.49 E-value=3.3e-14 Score=128.92 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=77.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--cc----------------------cccC------CCCceEEEEEEEEecCCe
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IVTN------KPQTTRHRILGICSGPEY 163 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--~~----------------------~~~~------~~~tt~~~~~~~~~~~~~ 163 (254)
...+++++|.+++|||||++++++.. +. .+.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34689999999999999999998641 10 0001 134454444445667788
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCch--------hHHHHHHHhhcccCCCCC-EEEEEe
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--------RIDEILEEGVGDHKDKLP-ILLVLN 234 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~--------~~~~~~~~~~~~~~~~~p-iivV~n 234 (254)
.+.+|||||+.+ +.......+..+|++++|+|++++.. ...+.+. +.. ..++| +++|+|
T Consensus 86 ~~~iiDtPGh~~---------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~--~~~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHRD---------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAF--TLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCTT---------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHH--HTTCCEEEEEEE
T ss_pred eEEEEECCCcHH---------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHH--HcCCCeEEEEEE
Confidence 999999999532 22345566899999999999987431 2222222 222 13565 999999
Q ss_pred cCCCCC
Q 025346 235 KKDLIK 240 (254)
Q Consensus 235 K~Dl~~ 240 (254)
|+|+..
T Consensus 154 K~Dl~~ 159 (458)
T 1f60_A 154 KMDSVK 159 (458)
T ss_dssp CGGGGT
T ss_pred cccccc
Confidence 999983
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=1.1e-13 Score=122.11 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=74.2
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCc
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (254)
+++++|.+++|||||+++++. .+.|.+.....+...+..+.+|||||+.+.. ......+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~---------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~---------~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK---------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTL---------KSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE---------EEEESSSEEEEECSSSSEEEEEECTTTTTCH---------HHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHh---------CCEEEEeeEEEEecCCeEEEEEECCChHHHH---------HHHHHHHHHC
Confidence 899999999999999999981 1223233334566777889999999964431 2334456899
Q ss_pred cEEEEEEeCCCCchhHHHHHHHhhcccCCCCCE-EEEEe-cCCCCChHhHHH
Q 025346 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAK 246 (254)
Q Consensus 197 d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pi-ivV~n-K~Dl~~~~~~~~ 246 (254)
|++++|+| ..+.......+...... .++|. ++|+| |+|+ +++.+++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~ 132 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDE 132 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHH
Confidence 99999999 76554333322222322 35777 99999 9999 6654443
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.48 E-value=2.6e-13 Score=121.37 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=76.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEE---EEe----------------cC----CeeEEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS----------------GP----EYQMIL 167 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~---~~~----------------~~----~~~~~l 167 (254)
....+++++|+.++|||||++++.+..... ....++.|...... ... .. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 344689999999999999999998643211 11223334321111 100 00 267999
Q ss_pred EecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc-h-hHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 168 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~-~-~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
|||||.. .+...+...+..+|++++|+|++++. . ...+.+.. +... ...|+++|+||+|+.+.+..
T Consensus 88 iDtPGh~---------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~~-~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 88 IDAPGHE---------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQII-GQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EECSSHH---------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHH-TCCCEEEEEECGGGSCHHHH
T ss_pred EECCChH---------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc-CCCcEEEEEECccCCCHHHH
Confidence 9999932 23344555677899999999999854 2 22333322 2222 23589999999999987654
No 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=1.9e-13 Score=129.66 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=81.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEE---------EEEE-e-----------------cCC----
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---------LGIC-S-----------------GPE---- 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~---------~~~~-~-----------------~~~---- 162 (254)
...+|+++|.+|+|||||+|++++.++..++..|+|..... .... + ..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35689999999999999999999998776666666621000 0000 0 000
Q ss_pred --------------------------eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHH-H
Q 025346 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-I 215 (254)
Q Consensus 163 --------------------------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~-~ 215 (254)
..+.+|||||+.+.. . ....+..++..+|+++||+|+++....... .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 469999999975432 1 123455677899999999999886543332 2
Q ss_pred HHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 216 LEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 216 ~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+...+. ..+.|+++|+||+|+....
T Consensus 222 l~~~l~--~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 222 LENYIK--GRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHHTT--TSCCCEEEEEECGGGGGGG
T ss_pred HHHHHH--hhCCCEEEEEECccccccc
Confidence 332333 2367899999999997553
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.48 E-value=2.2e-13 Score=109.00 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=77.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC--eeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
..+++++|++|+|||||++++.+..+.. ...+..+.+...+.+...+ ..+.+|||||.... ... +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~--~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY--RAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS--SCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcch--hhh-------hHHH
Confidence 4689999999999999999999887652 2233333333334444333 45678999995432 222 1233
Q ss_pred ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+..++++++|+|..+. +..+..++..+......+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 5778999999999873 334444554433323357899999999999653
No 169
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=115.63 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCCCCcEEEEEeCC---------CCChHHHHHHHhcCcccc-ccCCCCce--EEEE----------------EEEEecCC
Q 025346 111 PNHKSGYVAVLGKP---------NVGKSTLANQMIGQKLSI-VTNKPQTT--RHRI----------------LGICSGPE 162 (254)
Q Consensus 111 ~~~~~~~~~~~G~~---------~~gKssl~~~~~~~~~~~-~~~~~~tt--~~~~----------------~~~~~~~~ 162 (254)
......+|+++|.+ |+|||||++++.+.++.. ...+.+++ .+.. ....+...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34556799999999 999999999999843111 12222222 1000 00123445
Q ss_pred eeEEEEe------cCCCcccchhhhhHHHHHH--------HHHHcc---------------------CccEEEEEEeCCC
Q 025346 163 YQMILYD------TPGIIEKKIHMLDSMMMKN--------VRSAGI---------------------NADCIVVLVDACK 207 (254)
Q Consensus 163 ~~~~liD------tpG~~~~~~~~~~~~~~~~--------~~~~~~---------------------~~d~iv~vid~~~ 207 (254)
..+.+|| |||........+...+... ...++. ++|++++|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 6788888 6665433221111111000 001122 6999999999976
Q ss_pred ----CchhHHHHHHHhhcc-cCCCCCEEEEEecCCCCChHhHHHH
Q 025346 208 ----APERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 208 ----~~~~~~~~~~~~~~~-~~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
++..+..|+..+... ...+.|+++|+||+|+...+.+++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 219 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDA 219 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHH
Confidence 345566666665543 2357999999999999887666443
No 170
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.47 E-value=3.8e-15 Score=136.86 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec-CCeeEEEEecCCCcccchhhhhHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 191 (254)
++.++|+++|.+++|||||++++.+..+. ....+++|.+.....+.. .+..+.||||||.... ..+ ...
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f--~~~-------~~~ 71 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF--SAM-------RAR 71 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT--TTS-------BBS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH--HHH-------HHH
Confidence 35678999999999999999999987765 335556665443333333 4568999999995432 222 123
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
.+..+|++++|+|++++............. ..+.|+++|+||+|+..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~--~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAK--DAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHH--TTTCCEEECCBSGGGTT
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEecccccc
Confidence 467899999999999865443322222222 34689999999999975
No 171
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.45 E-value=5.3e-13 Score=119.27 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=73.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc--ccCCCCceEEEEEE---EEe--------c----C--------CeeEEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS--------G----P--------EYQMIL 167 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~--~~~~~~tt~~~~~~---~~~--------~----~--------~~~~~l 167 (254)
....+++++|..++|||||++++.+..... ....++.|...... ... . + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 345789999999999999999998653221 11123334321111 100 0 1 167999
Q ss_pred EecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc-h-hHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 168 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~-~-~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
|||||. ..+...+...+..+|++++|+|++++. . ...+.+.. +... ...|+++|+||+|+.+.+
T Consensus 86 iDtPGh---------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~l-~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 86 VDSPGH---------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-LEIL-GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EECSSH---------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-HHHT-TCCCEEEEEECTTSSCTT
T ss_pred EECCCH---------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-HHHc-CCCeEEEEEEccCCCCHH
Confidence 999993 223344555677889999999999853 2 22333322 2222 235899999999998754
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.44 E-value=1.9e-13 Score=126.32 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceE-EEEEEE------E----ecCCeeEEEEecCCCcccchhh
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGI------C----SGPEYQMILYDTPGIIEKKIHM 180 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~-~~~~~~------~----~~~~~~~~liDtpG~~~~~~~~ 180 (254)
.....+|+++|.+|+|||||++++.+.++. ..+.+|.. ...... + ...+..+.+|||||. ..+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--e~~~~ 113 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--EIMHA 113 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC--CTTTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH--HHHHH
Confidence 345579999999999999999999988764 22222221 111111 1 123578999999994 33333
Q ss_pred hhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
... .++..+|++++|+|+++. +....|+..+... ..+.|+++|+||+|+...++
T Consensus 114 ~~~-------~~l~~~d~ii~V~D~s~~-~~~~~~~~~l~~~-~~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 114 SHQ-------FFMTRSSVYMLLLDSRTD-SNKHYWLRHIEKY-GGKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp TCH-------HHHHSSEEEEEEECGGGG-GGHHHHHHHHHHH-SSSCCEEEEECCTTTCTTCC
T ss_pred HHH-------HHccCCcEEEEEEeCCCc-hhHHHHHHHHHHh-CCCCCEEEEEECCCcccccc
Confidence 333 235679999999999874 5556666554443 35799999999999986544
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.44 E-value=7.8e-15 Score=136.84 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCccccc------------------------------cCCCCceEEEEEEEEecC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGP 161 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~ 161 (254)
.....+|+++|.+++|||||+++|+....... ...+++|.+.....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34567899999999999999999975321111 113456666666666667
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc-------hhHHHHHHHhhcccCCCCC-EEEEE
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVL 233 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~-------~~~~~~~~~~~~~~~~~~p-iivV~ 233 (254)
+..+.||||||+.+..... ...+..+|++|+|+|++++. .........+... .++| +++|+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~---------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvvi 322 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGM---------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSV 322 (592)
T ss_dssp -----CCEEESSSEEEEEC---------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEE
T ss_pred CeEEEEEECCChHHHHHHH---------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEE
Confidence 7899999999976543221 23357899999999998631 2222222222222 2455 99999
Q ss_pred ecCCCCC
Q 025346 234 NKKDLIK 240 (254)
Q Consensus 234 nK~Dl~~ 240 (254)
||+|+..
T Consensus 323 NKiDl~~ 329 (592)
T 3mca_A 323 NKLDLMS 329 (592)
T ss_dssp ECGGGGT
T ss_pred ecccccc
Confidence 9999976
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.44 E-value=1.7e-14 Score=131.50 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 192 (254)
++.++++++|+.++|||||++++.+..+. ....++.|.+.....+..++..+.+|||||+.... .+ +...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~--~~-------~~~~ 71 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT--SM-------RARG 71 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT--TS-------BCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH--HH-------HHHH
Confidence 45678999999999999999999876543 23334444433333445567789999999964432 21 1234
Q ss_pred ccCccEEEEEEeCCCCchh-HHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~-~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+..+|++++|+|++++... ..+.+... . ..+.|+++|+||+|+..
T Consensus 72 ~~~aD~aILVVda~~g~~~qT~e~l~~~-~--~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 72 AQATDIVVLVVAADDGVMPQTIEAIQHA-K--AAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SBSCSSEEEEEETTTBSCTTTHHHHHHH-H--HTTCCEEEEEECSSSST
T ss_pred HhhCCEEEEEeecccCccHHHHHHHHHH-H--hcCceEEEEEEeccccc
Confidence 6789999999999874322 22222222 1 24689999999999975
No 175
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.43 E-value=4.5e-13 Score=127.12 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=77.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc--ccc---------ccC------CCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK--LSI---------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~--~~~---------~~~------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
...++++++|.+|+|||||+++++... +.. +.+ .+++|.......+.+.+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 446789999999999999999998521 110 111 123333333445566788999999999755
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.. ..+...+..+|++++|+|++++..... ..+.. +. ..+.|+++|+||+|+...
T Consensus 88 f~---------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~--~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FT---------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-AT--TYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CC---------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HH--HTTCCEEEEEECTTSTTC
T ss_pred hH---------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HH--HcCCCEEEEEECCCcccc
Confidence 32 223445677999999999988654433 23332 22 247899999999999864
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.42 E-value=5.7e-13 Score=126.38 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=76.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc-----cc------cC------CCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~------~~------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+.++++++|.+|+|||||+++++..... .+ .+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 34578999999999999999999842110 00 00 223333333444566788999999999654
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.. ..+...+..+|++|+|+|++++..... ..+.... ..++|+++|+||+|+...
T Consensus 90 f~---------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~---~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FT---------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE---KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH---HTTCCEEEEEECTTSTTC
T ss_pred hH---------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH---HcCCCEEEEEECCCcccC
Confidence 32 234455778999999999998654433 2233222 247899999999999865
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=4.6e-13 Score=121.68 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc--cc----------------------cccC------CCCceEEEEEEEEecCCe
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IVTN------KPQTTRHRILGICSGPEY 163 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~--~~----------------------~~~~------~~~tt~~~~~~~~~~~~~ 163 (254)
...+++++|..++|||||+++++... +. .+.+ ..+.|.+.....+..++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 34689999999999999999997421 10 0011 223444443345566788
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCc--------hhHHHHHHHhhcccCCCCC-EEEEEe
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--------ERIDEILEEGVGDHKDKLP-ILLVLN 234 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~--------~~~~~~~~~~~~~~~~~~p-iivV~n 234 (254)
.+.+|||||+.+. ...+...+..+|++|+|+|++++. ....+.+... . ..++| +++|+|
T Consensus 122 ~~~iiDtPGh~~f---------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~--~~~vp~iivviN 189 (467)
T 1r5b_A 122 RFSLLDAPGHKGY---------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-R--TQGINHLVVVIN 189 (467)
T ss_dssp EEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-H--HTTCSSEEEEEE
T ss_pred EEEEEECCCcHHH---------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-H--HcCCCEEEEEEE
Confidence 9999999995332 233445678999999999998863 1222322222 1 23577 999999
Q ss_pred cCCCCC
Q 025346 235 KKDLIK 240 (254)
Q Consensus 235 K~Dl~~ 240 (254)
|+|+..
T Consensus 190 K~Dl~~ 195 (467)
T 1r5b_A 190 KMDEPS 195 (467)
T ss_dssp CTTSTT
T ss_pred CccCCC
Confidence 999964
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.41 E-value=2.4e-12 Score=122.30 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc--ccc---c------cC------CCCceEEEEEEEEecCC-------eeEEEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK--LSI---V------TN------KPQTTRHRILGICSGPE-------YQMILY 168 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~--~~~---~------~~------~~~tt~~~~~~~~~~~~-------~~~~li 168 (254)
.+.++++++|..++|||||+++++... +.. + .+ ..+.|.......+.+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456789999999999999999997531 110 0 01 12333333333344444 889999
Q ss_pred ecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
||||..+.. ..+...+..+|++|+|+|++++..... ..+... . ..++|+++|+||+|+...
T Consensus 88 DTPG~~df~---------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~--~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFT---------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N--KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchH---------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H--HcCCCEEEEEeCCCcccc
Confidence 999964422 334455778999999999998654332 233222 2 347899999999999765
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.38 E-value=2e-12 Score=126.55 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc---------------ccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
....+|+++|.+++|||||++++.+..... .....+.|.......+...+..+.+|||||+.+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH--
Confidence 445789999999999999999998641100 001123333322233556678999999999432
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchh-HHHHHHHhhcccCCCCC-EEEEEecCCCCCh
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLP-ILLVLNKKDLIKP 241 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~-~~~~~~~~~~~~~~~~p-iivV~nK~Dl~~~ 241 (254)
+.......+..+|++|+|+|++++... ..+++.. +.. .++| +++|+||+|+.+.
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~l-l~~--lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILL-GRQ--VGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHH-HHH--HTCSCEEEEEECCTTCCC
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHH-HHH--cCCCeEEEEEeecccccc
Confidence 334555678999999999999885432 3333332 222 3578 8999999999863
No 180
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.37 E-value=1.2e-12 Score=121.80 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=67.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccc--------cC------CCCceEEEEEEEE-----ecCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------TN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~--------~~------~~~tt~~~~~~~~-----~~~~~~~~liDtpG~~~ 175 (254)
.++++++|+.++|||||+++++....... .+ ..+.|.......+ ++....+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 46899999999999999999986321100 00 1222322222222 22347899999999654
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCch--hHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~--~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.. ..+...+..+|++++|+|++++.. ....+... . ..++|+++|+||+|+...
T Consensus 84 F~---------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~-~---~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 84 FS---------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA-M---EMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GH---------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH-H---HTTCEEEEEEECTTSTTC
T ss_pred HH---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-H---HCCCCEEEeeeccCcccc
Confidence 32 233445778999999999988543 22233222 2 246899999999999864
No 181
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.37 E-value=1.2e-12 Score=121.79 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccc--------cC------CCCceEEEE--EEEE---ecCCeeEEEEecCCCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------TN------KPQTTRHRI--LGIC---SGPEYQMILYDTPGIIE 175 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~--------~~------~~~tt~~~~--~~~~---~~~~~~~~liDtpG~~~ 175 (254)
.++++++|+.++|||||+++++....... .+ ..+.|.... ...+ ++....+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46899999999999999999986321100 00 011121111 1111 22346899999999755
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHH-HHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~-~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.. ..+...+..+|++++|+|++++..... ..+.... ..++|+++|+||+|+...
T Consensus 86 F~---------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~---~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 86 FS---------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAV---EQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp GH---------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH---HTTCEEEEEEECTTSTTC
T ss_pred HH---------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH---HCCCCEEEEEeccCcccc
Confidence 32 233445788999999999998654322 2222222 247899999999999764
No 182
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.35 E-value=5.9e-13 Score=123.97 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=72.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-CceEEEEEEEEe------------------cCCeeEEEEecCCCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGII 174 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-~tt~~~~~~~~~------------------~~~~~~~liDtpG~~ 174 (254)
+.++++++|++++|||||++++++..+.. ..+ +.|......... .....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46789999999999999999998765431 111 222211111111 112259999999965
Q ss_pred ccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCC
Q 025346 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~ 240 (254)
+.. .+. ...+..+|++|+|+|++++...........+. ..++|+++|+||+|+..
T Consensus 82 ~F~--~~~-------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~--~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFT--TLR-------KRGGALADLAILIVDINEGFKPQTQEALNILR--MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCT--TSB-------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCCEEEEEECGGGST
T ss_pred HHH--HHH-------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHH--HcCCeEEEEeccccccc
Confidence 432 221 13467899999999999965443322222222 25789999999999974
No 183
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.34 E-value=1.3e-11 Score=117.15 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=79.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEE----------------------------------------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~---------------------------------------- 153 (254)
..++|+++|.+++||||++|.+++..+...+..+ +|+.+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4568999999999999999999998763222221 22110
Q ss_pred -----------E-EEEEecCCeeEEEEecCCCcccc----hhhhhHHHHHHHHHHc-cCccEEEEEEeCCCCchhHHH-H
Q 025346 154 -----------I-LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-I 215 (254)
Q Consensus 154 -----------~-~~~~~~~~~~~~liDtpG~~~~~----~~~~~~~~~~~~~~~~-~~~d~iv~vid~~~~~~~~~~-~ 215 (254)
+ ..........+.|+||||+.... ...+..........++ ..+|++++|+|++......+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 11111223468999999987632 1111222223333333 688999999999885543333 2
Q ss_pred HHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 216 ~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
+...+. ..+.|+++|+||+|++++..
T Consensus 209 ll~~L~--~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 209 IAKEVD--PQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHC--TTCSSEEEEEECTTSSCTTC
T ss_pred HHHHHH--hcCCCEEEEEeCcccCCcch
Confidence 333333 34689999999999987644
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.34 E-value=3.5e-12 Score=117.91 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccc-----cc----------cC------CCCceEEEEEEEEecCCeeEEEEecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV----------TN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~----------~~------~~~tt~~~~~~~~~~~~~~~~liDtpG 172 (254)
+.++++|+|+.++|||||..+++...-. .+ .+ ..+.|.......+.+.+..++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4678999999999999999999732110 01 11 112222222334678899999999999
Q ss_pred CcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
+.+.. ....+.++-+|++|+|+|+..+.+.....+..... ..++|.++++||+|....
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~--~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR--MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH--HTTCCEEEEEECTTSCCC
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH--HhCCceEEEEecccchhc
Confidence 87765 33445578899999999999987666554444333 357999999999999764
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.32 E-value=2.2e-11 Score=108.76 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=70.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccC------CCCceEEEEEE-EEe--cCCeeEEEEecCCCcccch-----hh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------KPQTTRHRILG-ICS--GPEYQMILYDTPGIIEKKI-----HM 180 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~------~~~tt~~~~~~-~~~--~~~~~~~liDtpG~~~~~~-----~~ 180 (254)
..+|+++|++|+|||||++.+++..+..... ...++.....+ ... .....+.+|||+|+..... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 3578999999999999999999876531210 11222211111 112 2234789999999864321 11
Q ss_pred hhHHHHHHHHHH-----------ccC--ccEEEEEEeCC-CCchhHHH-HHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 181 LDSMMMKNVRSA-----------GIN--ADCIVVLVDAC-KAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 181 ~~~~~~~~~~~~-----------~~~--~d~iv~vid~~-~~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+.......+..+ +.. +++++|+++.+ .++...+. ++..+ . .+.|+++|+||+|+..++++.
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h---ccCcEEEEEEcccCccHHHHH
Confidence 111111222222 223 44567777665 56666653 44333 2 378999999999999988776
Q ss_pred HHH
Q 025346 246 KKL 248 (254)
Q Consensus 246 ~~~ 248 (254)
...
T Consensus 187 ~~k 189 (418)
T 2qag_C 187 QFK 189 (418)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.31 E-value=1.1e-11 Score=117.07 Aligned_cols=116 Identities=24% Similarity=0.166 Sum_probs=78.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCcccc-----c------cC------CCCceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~-----~------~~------~~~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
.+..+++++|++|+|||||++++++..... + .+ ..+.|.......+.+....+.+|||||..+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456789999999999999999998432210 0 00 012233333344556788999999999643
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
.. ..+..++..+|++++|+|++++.......+..... ..++|+++|+||+|+.
T Consensus 87 f~---------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~--~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FV---------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAE--RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH--HTTCCEEEEEECGGGC
T ss_pred hH---------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHH--HccCCEEEEecCCchh
Confidence 21 33445577899999999998866544333333232 2478999999999997
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=6.2e-12 Score=112.29 Aligned_cols=128 Identities=26% Similarity=0.313 Sum_probs=87.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-eeEEEEecCCCcccchh--hhhHHHHHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRS 191 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDtpG~~~~~~~--~~~~~~~~~~~~ 191 (254)
...++++|++|+|||||++.+.+.... +.+++++|.....+.+...+ ..+.++||||+...... .+.. .+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~----~fl~ 231 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL----EFLR 231 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH----HHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH----HHHH
Confidence 457999999999999999999987653 67788887766666666554 78999999998643211 1111 1223
Q ss_pred HccCccEEEEEEeCC-CCchhHHHHHHHhhccc--CCCCCEEEEEecCCCCChHhHHHH
Q 025346 192 AGINADCIVVLVDAC-KAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKK 247 (254)
Q Consensus 192 ~~~~~d~iv~vid~~-~~~~~~~~~~~~~~~~~--~~~~piivV~nK~Dl~~~~~~~~~ 247 (254)
....++.+++++|++ ++...+..+..++.... ....|.++|+||+|+.....+...
T Consensus 232 ~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l 290 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKAL 290 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHH
Confidence 457899999999996 33444444443332211 125799999999999887433333
No 188
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=3.2e-12 Score=123.64 Aligned_cols=114 Identities=22% Similarity=0.297 Sum_probs=73.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccC---------------CCCceEEEEEE--EE--------------ecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN---------------KPQTTRHRILG--IC--------------SGPE 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~---------------~~~tt~~~~~~--~~--------------~~~~ 162 (254)
..++|+++|..++|||||+++++......... ..+.|...... .+ +..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35689999999999999999998653211111 11112111111 11 1236
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHH-HHHHhhcccCCCCCEEEEEecCCCC
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~-~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
..+.+|||||+.+.. ..+..+++.+|++|+|+|++++...... .+.... ..++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~---------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~---~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS---------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL---GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSC---------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH---HTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhH---------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---HcCCCeEEEEECCCcc
Confidence 789999999976543 2344557899999999999986443332 233222 2468999999999987
No 189
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=5.1e-12 Score=110.71 Aligned_cols=90 Identities=23% Similarity=0.269 Sum_probs=62.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCcccc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 177 (254)
..+++++|.+|+|||||+|++.+... .+.++|++|.....+.+..++ ..+.+|||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 35799999999999999999998874 477888888766555554443 469999999976432
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCC
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~ 207 (254)
.. .......+..+++.+|++++|+|+++
T Consensus 81 ~~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SK--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HH--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cc--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 11 01111234456789999999999986
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.24 E-value=5.7e-12 Score=110.58 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc------CccccccCCCCceEE-------------------EEEE-----------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH-------------------RILG----------- 156 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~------~~~~~~~~~~~tt~~-------------------~~~~----------- 156 (254)
.+.+.|+++|.+|+|||||++.+.. .++..+...+.++.. ....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 3567899999999999999999863 232222222222210 0000
Q ss_pred ---------EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC
Q 025346 157 ---------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227 (254)
Q Consensus 157 ---------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~ 227 (254)
.+...+..+.||||||+.+.. ...+..+|++++|+|.+..... . . +...-.+.
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~------------~~~~~~aD~vl~V~d~~~~~~~--~---~-l~~~~~~~ 218 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSE------------VAVANMVDTFVLLTLARTGDQL--Q---G-IKKGVLEL 218 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHH------------HHHHTTCSEEEEEEESSTTCTT--T---T-CCTTSGGG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHH------------HHHHHhCCEEEEEECCCCCccH--H---H-HHHhHhhc
Confidence 012246789999999975431 1225889999999998764222 1 1 11111246
Q ss_pred CEEEEEecCCCCChHhHH
Q 025346 228 PILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 228 piivV~nK~Dl~~~~~~~ 245 (254)
|+++|+||+|+.......
T Consensus 219 p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CSEEEEECCCGGGHHHHH
T ss_pred CCEEEEECCCCcChhHHH
Confidence 999999999998665443
No 191
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.22 E-value=2.9e-12 Score=112.96 Aligned_cols=128 Identities=23% Similarity=0.251 Sum_probs=82.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc------cccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc--hhhhhHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMM 186 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~------~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~ 186 (254)
..+++++|.+|+|||||+|++++.. ...++..+++|.......+.. .+.++||||+.... .+.+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~--- 233 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGK--- 233 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCH---
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhH---
Confidence 3579999999999999999999753 334678889998766654332 38999999987643 122222
Q ss_pred HHHHHH--ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHHh
Q 025346 187 KNVRSA--GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVTT 252 (254)
Q Consensus 187 ~~~~~~--~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~~ 252 (254)
+..... ....+.++|+++.... ...+.. .+.+. ..+.|+++|+||+|..+..+.+...+.++
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~~~~~ 299 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--FDYVS--GGRRAFTCHFSNRLTIHRTKLEKADELYK 299 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE--SSSEEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred HHHHHhccccccCceEEEEcCCCEEEEcceEE--EEEec--CCCceEEEEecCccccccccHHHHHHHHH
Confidence 222222 4678899999998532 111110 11122 34689999999999998877766655543
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=1.5e-12 Score=114.80 Aligned_cols=126 Identities=22% Similarity=0.275 Sum_probs=83.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC-----ccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc--hhhhhHHHHH
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~--~~~~~~~~~~ 187 (254)
..+++++|.+|+|||||+|.+++. ....+++.+++|.......... .+.++||||+.... .+.+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~--- 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDAR--- 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTT---
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHH---
Confidence 357999999999999999999986 4445788999998876654332 38999999987543 1112111
Q ss_pred HHHHH--ccCccEEEEEEeCCCC--chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHH
Q 025346 188 NVRSA--GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEV 250 (254)
Q Consensus 188 ~~~~~--~~~~d~iv~vid~~~~--~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~ 250 (254)
..... ....+.++|+++.... ...+.. .+.+. ..+.|+++++||+|..+..+++...+.
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~ 298 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR--LDYIK--GGRRSFVCYMANELTVHRTKLEKADSL 298 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTEE--EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHH
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEEE--EEEcc--CCCceEEEEecCCcccccccHHHHHHH
Confidence 11122 2678999999998542 111111 11122 346899999999999877655544443
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.20 E-value=1.8e-11 Score=106.86 Aligned_cols=115 Identities=21% Similarity=0.336 Sum_probs=69.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc------CccccccCCCCceEE--------------------EEEEE---------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH--------------------RILGI--------- 157 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~------~~~~~~~~~~~tt~~--------------------~~~~~--------- 157 (254)
.+...++++|++|+||||+++.+.+ .+...+...+.++.. .+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4567899999999999999999963 333333333333220 00000
Q ss_pred ----------EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC
Q 025346 158 ----------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227 (254)
Q Consensus 158 ----------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~ 227 (254)
+...+..+.+|||||+.+... .....+|++++|+|++.... . .. +.....+.
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------------~~~~~aD~vl~Vvd~~~~~~-~----~~-l~~~~~~~ 195 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDD-L----QG-IKKGLMEV 195 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC-----------CC-CCHHHHHH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH------------HHHHhCCEEEEEEeCCccHH-H----HH-HHHhhhcc
Confidence 013467899999999764321 12478999999999975321 0 00 00000146
Q ss_pred CEEEEEecCCCCChHhHH
Q 025346 228 PILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 228 piivV~nK~Dl~~~~~~~ 245 (254)
|.++|+||+|+.......
T Consensus 196 p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 196 ADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp CSEEEECCCCTTCHHHHH
T ss_pred cCEEEEECCCCCChHHHH
Confidence 889999999998765443
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.20 E-value=8.2e-12 Score=109.34 Aligned_cols=112 Identities=23% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCceE-------------------------EEEEEEE---
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTTR-------------------------HRILGIC--- 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~tt~-------------------------~~~~~~~--- 158 (254)
.....++++|++|+|||||+|++++. ++......+.+.. ....+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 44678999999999999999999862 2222222222111 0000000
Q ss_pred -----------ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC
Q 025346 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227 (254)
Q Consensus 159 -----------~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~ 227 (254)
...+..+.++||||+.... ......+|++++|+|++.+... ......+ ...
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~------------~~l~~~~d~vl~V~d~~~~~~~-~~i~~~i-----l~~ 213 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE------------FAVADMVDMFVLLLPPAGGDEL-QGIKRGI-----IEM 213 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH------------HHHHTTCSEEEEEECCC------------------CCS
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh------------hhHHhhCCEEEEEEcCCcchhH-HHhHHHH-----Hhc
Confidence 1356789999999975331 1225689999999999864221 1111111 245
Q ss_pred CEEEEEecCCCCChH
Q 025346 228 PILLVLNKKDLIKPG 242 (254)
Q Consensus 228 piivV~nK~Dl~~~~ 242 (254)
|.++|+||+|+.+..
T Consensus 214 ~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 214 ADLVAVTKSDGDLIV 228 (349)
T ss_dssp CSEEEECCCSGGGHH
T ss_pred CCEEEEeeecCCCch
Confidence 889999999998654
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.20 E-value=8.3e-11 Score=100.88 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=65.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccccccCC-------CCceE-EEEEEEE--ecCCeeEEEEecCCCccc-----chh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTR-HRILGIC--SGPEYQMILYDTPGIIEK-----KIH 179 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~-------~~tt~-~~~~~~~--~~~~~~~~liDtpG~~~~-----~~~ 179 (254)
..+|+++|++|+|||||++++++......+.. ..+.. ....... ......+.+|||+|+... .+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 45789999999999999999987632212111 11111 1111112 223457999999997421 122
Q ss_pred hhhHHHHHHHHHHcc-------------CccEEEEEEeCCC-CchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 180 ~~~~~~~~~~~~~~~-------------~~d~iv~vid~~~-~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
.+..........++. .+++++|+++.+. +++.... .+++....+.|+++|+||+|+..++++.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHHHH
Confidence 222211111111111 2455777777544 4665543 2222233567999999999999876654
No 196
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=3.1e-10 Score=101.24 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCCcE--EEEEeCCCCChHHHHHHHhcCcccc--c-cCCCCceEEEEEEEEecCC--eeEEEEecCCCcccch-----hh
Q 025346 113 HKSGY--VAVLGKPNVGKSTLANQMIGQKLSI--V-TNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKI-----HM 180 (254)
Q Consensus 113 ~~~~~--~~~~G~~~~gKssl~~~~~~~~~~~--~-~~~~~tt~~~~~~~~~~~~--~~~~liDtpG~~~~~~-----~~ 180 (254)
..+.. ++++|++|+|||||+|.+++..+.. . ...++.+...+.......+ ..+.++|++|+..... ..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 34445 9999999999999999999875321 1 1123344433333333333 3689999999865321 11
Q ss_pred hhHHHHHHH----HHHc---------cCc--c-EEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 181 LDSMMMKNV----RSAG---------INA--D-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 181 ~~~~~~~~~----~~~~---------~~~--d-~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+.......+ ..+. ..+ | +++|++|+..+....+..+...+ ..+.|+|+|.||+|.+.+.++
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L---~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL---DSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---CSCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---hhCCCEEEEEcchhccchHHH
Confidence 111111221 1111 112 2 46667777776666654443333 357899999999999999888
Q ss_pred HHHHHHHh
Q 025346 245 AKKLEVTT 252 (254)
Q Consensus 245 ~~~~~~~~ 252 (254)
......+.
T Consensus 195 ~~l~~~I~ 202 (427)
T 2qag_B 195 TKFKIKIT 202 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665553
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.15 E-value=9.5e-11 Score=111.56 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccc-----cccC------------CCCceEEEEEEEEec-------CCeeEEEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTN------------KPQTTRHRILGICSG-------PEYQMILY 168 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~~~------------~~~tt~~~~~~~~~~-------~~~~~~li 168 (254)
.+.++++|+|+.++|||||..+++...-. .+.. ..+.|.......+.+ .+..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 44578999999999999999999743211 1111 011111111111222 35789999
Q ss_pred ecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
||||+.+.. ....+.++-+|++|+|+|+..+.+...+.+..... ..++|.++|+||+|....
T Consensus 91 DTPGHvDF~---------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~--~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFT---------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN--KYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH--HHTCCEEEEEECSSSTTC
T ss_pred eCCCCcccH---------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEccccccCc
Confidence 999987765 33445577899999999999987665544333332 247999999999999754
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.15 E-value=1.6e-11 Score=115.49 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=80.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCccc-----ccc------CCC------CceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKLS-----IVT------NKP------QTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~~-----~~~------~~~------~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.++|+++|+.++|||||..+++...-. .+. +.. +.|.......+.+.+..++++||||+.+..
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 457999999999999999999732111 011 110 222222333456788999999999987764
Q ss_pred hhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
....+.++-+|++|+|+|+..+.+.....+..... ..++|.++++||+|....
T Consensus 82 ---------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~--~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 ---------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR--KMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ---------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH--HHTCSCEECCEECCSSSC
T ss_pred ---------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH--HcCCCeEEEEeccccccC
Confidence 33445578999999999999987655444333333 236899999999999754
No 199
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.09 E-value=6.8e-10 Score=93.71 Aligned_cols=133 Identities=17% Similarity=0.293 Sum_probs=75.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCcccccc-------CCCCceEEEEEEEE-ecC--CeeEEEEecCCCcccch-----hh
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGIC-SGP--EYQMILYDTPGIIEKKI-----HM 180 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~-------~~~~tt~~~~~~~~-~~~--~~~~~liDtpG~~~~~~-----~~ 180 (254)
.+++++|++|+|||||+|.+++...+..+ +.+.+......+.+ ... ...+.++|++|+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 47999999999999999999975432111 11122211112221 111 23689999999865321 11
Q ss_pred hhHHHHHHHH----HH----------ccCccEEEEEEeCC-CCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHH
Q 025346 181 LDSMMMKNVR----SA----------GINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (254)
Q Consensus 181 ~~~~~~~~~~----~~----------~~~~d~iv~vid~~-~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~ 245 (254)
+.......+. .. ...+++.++++|.. .+....+..+...+. ...++++|+||+|.+.++++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~---~~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS---KVVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH---TTSEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH---hcCcEEEEEeccccCCHHHHH
Confidence 2222211211 11 22368889999965 566665544333333 228999999999999998876
Q ss_pred HHHHHH
Q 025346 246 KKLEVT 251 (254)
Q Consensus 246 ~~~~~~ 251 (254)
.....+
T Consensus 160 ~~k~~i 165 (270)
T 3sop_A 160 EFKQRV 165 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.08 E-value=8.8e-11 Score=103.89 Aligned_cols=91 Identities=23% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCccc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 176 (254)
...+++++|.+|+|||||+|++.+.++ .++++|++|.....+.+...+ ..+.+|||||+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999877 578889888776666554432 24999999997643
Q ss_pred chhhhhHHHHHHHHHHccCccEEEEEEeCCC
Q 025346 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (254)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~ 207 (254)
... .......+..+++.+|++++|+|+++
T Consensus 100 as~--~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHN--GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cch--hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 211 11222345677899999999999864
No 201
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.08 E-value=3e-10 Score=98.61 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=56.8
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC------------CchhHHHHHHHhhcc
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK------------APERIDEILEEGVGD 222 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~------------~~~~~~~~~~~~~~~ 222 (254)
...+...+..+.+|||+| +. .++..|..++++++++|||+|+++ ...+...++..+...
T Consensus 153 ~~~~~~~~v~l~iwDtaG--Qe-------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG--QR-------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCS--CH-------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCC--cc-------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 344556778999999999 32 234567788999999999999972 233445566665543
Q ss_pred c-CCCCCEEEEEecCCCCCh
Q 025346 223 H-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 223 ~-~~~~piivV~nK~Dl~~~ 241 (254)
. ..+.|+++|+||+|+...
T Consensus 224 ~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp GGGTTSEEEEEEECHHHHHH
T ss_pred hccCCCeEEEEEECchhhhh
Confidence 2 367999999999998653
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.02 E-value=2.8e-10 Score=95.02 Aligned_cols=128 Identities=21% Similarity=0.179 Sum_probs=73.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHh-----cCccccccCCCCceEE------------EEEEEE-----------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC----------------- 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~-----~~~~~~~~~~~~tt~~------------~~~~~~----------------- 158 (254)
.+...+++.|.+|+||||+++.+. +.+...+...+..+.. ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 445688999999999999999998 6665544433321100 000000
Q ss_pred ------------e-cCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHH--HHHh-hcc
Q 025346 159 ------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI--LEEG-VGD 222 (254)
Q Consensus 159 ------------~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~--~~~~-~~~ 222 (254)
. .....+.+|||||..+. ...... .......+.. +++++++|+.........+ .... ...
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~--~~~~~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMET--FLFHEF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHH--HHHSHH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccch--hhhhhh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 01247999999996432 111111 1223334566 9999999986543322211 1111 001
Q ss_pred cCCCCCEEEEEecCCCCChHhH
Q 025346 223 HKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 223 ~~~~~piivV~nK~Dl~~~~~~ 244 (254)
...+.|+++|+||+|+....++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~ 189 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEK 189 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHH
T ss_pred cccCCCeEEEEecccccccccH
Confidence 1236899999999999887644
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.01 E-value=1.2e-10 Score=102.43 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=62.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEec---------------------CCeeEEEEecCCCc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGII 174 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~~~~~~liDtpG~~ 174 (254)
.+++++|.+|+|||||+|++.+.. ..+.+++++|.....+.... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999875 34677777776544444322 13569999999986
Q ss_pred ccch--hhhhHHHHHHHHHHccCccEEEEEEeCCC
Q 025346 175 EKKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (254)
Q Consensus 175 ~~~~--~~~~~~~~~~~~~~~~~~d~iv~vid~~~ 207 (254)
.... +.+. ..+...++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 5321 1122 334456789999999999986
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.97 E-value=6.2e-10 Score=90.46 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc-----cccccCCCCceEE--------EEEEEE------------------ecCC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRH--------RILGIC------------------SGPE 162 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~-----~~~~~~~~~tt~~--------~~~~~~------------------~~~~ 162 (254)
..++++++|.+|+|||||+++++... ...+...++++.+ ...... ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998642 2222223322100 000111 1234
Q ss_pred eeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+.+|||+|....+. .+....+.+++|+|++.......... .. .+.|+++|+||+|+.+.
T Consensus 109 ~d~iiidt~G~~~~~~------------~~~~~~~~~i~vvd~~~~~~~~~~~~-~~-----~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV------------DFDLGENYRVVMVSVTEGDDVVEKHP-EI-----FRVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG------------GCCCSCSEEEEEEEGGGCTTHHHHCH-HH-----HHTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCCc------------hhccccCcEEEEEeCCCcchhhhhhh-hh-----hhcCCEEEEecccCCcc
Confidence 5789999999422210 01125678999999987543322111 11 24789999999999643
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=6e-10 Score=98.64 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCC-----------------eeEEEEecCCCcc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIE 175 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDtpG~~~ 175 (254)
..+.+++++|.+|+|||||+|.+++.....++++|++|.....+.+...+ ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 34668999999999999999999998875688999998876666655443 3589999999754
Q ss_pred cchhhhhHHHHHHHHHHccCccEEEEEEeCCC
Q 025346 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (254)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~ 207 (254)
.... ...+...+...+..+|++++|+|+.+
T Consensus 98 ~~s~--~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GAST--GVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCS--SSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcH--HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3211 11111234556789999999999864
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.94 E-value=1.2e-09 Score=94.52 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=55.5
Q ss_pred EEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCC-------C-----CchhHHHHHHHhhc
Q 025346 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------K-----APERIDEILEEGVG 221 (254)
Q Consensus 154 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~-------~-----~~~~~~~~~~~~~~ 221 (254)
....+...+..+.+|||+| +.. ++..|..++++++++|||+|++ + ...+...++..+..
T Consensus 158 ~~~~~~~~~v~l~iwDtgG--Qe~-------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 158 IEYPFDLQSVIFRMVDVGG--QRS-------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp EEEEEEETTEEEEEEEECC--SHH-------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred EEEEEEeeceeeEEEEcCC--chh-------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 3344556788999999999 332 2344667899999999999775 2 12344455666554
Q ss_pred cc-CCCCCEEEEEecCCCCCh
Q 025346 222 DH-KDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 222 ~~-~~~~piivV~nK~Dl~~~ 241 (254)
.. ..+.|+++++||+|+...
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHH
T ss_pred hhccCCceEEEEEECchhhhh
Confidence 32 367999999999998653
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.93 E-value=1.1e-09 Score=95.21 Aligned_cols=112 Identities=23% Similarity=0.344 Sum_probs=66.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCceEE-------------------EEEE----------
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-------------------RILG---------- 156 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~tt~~-------------------~~~~---------- 156 (254)
..++..++++|++|+|||||++.+. +.+.......+.++.. ....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 3456789999999999999999998 3333322222211110 0000
Q ss_pred ----------EEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCC
Q 025346 157 ----------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 226 (254)
Q Consensus 157 ----------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~ 226 (254)
.+...+..+.++||||+.+... .....+|++++|+|.+.+.. . ..+.. ....
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~-~----~~i~~-~i~~ 193 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDE-L----QGIKK-GIFE 193 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC-----------CCT-THHH
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCccc-H----HHHHH-HHhc
Confidence 0123577899999999865421 12468999999999864321 1 11100 0012
Q ss_pred CCEEEEEecCCCCCh
Q 025346 227 LPILLVLNKKDLIKP 241 (254)
Q Consensus 227 ~piivV~nK~Dl~~~ 241 (254)
.+.++|+||+|+...
T Consensus 194 ~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 194 LADMIAVNKADDGDG 208 (337)
T ss_dssp HCSEEEEECCSTTCC
T ss_pred cccEEEEEchhccCc
Confidence 466888899998653
No 208
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.92 E-value=1.6e-09 Score=94.78 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=54.4
Q ss_pred EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC------------chhHHHHHHHhhcc-
Q 025346 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD- 222 (254)
Q Consensus 156 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~------------~~~~~~~~~~~~~~- 222 (254)
..+...+..+.+|||+|. ..+. ..|..++.+++++|||+|+++. ..+...++..+...
T Consensus 186 ~~~~~~~~~l~iwDt~GQ--e~~r-------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGGQ--RSER-------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp EEEEETTEEEEEEEECCS--GGGG-------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEEeeCCeeEEEEeCCCc--hhhh-------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344556789999999994 3322 3345678999999999999872 34445566665553
Q ss_pred cCCCCCEEEEEecCCCC
Q 025346 223 HKDKLPILLVLNKKDLI 239 (254)
Q Consensus 223 ~~~~~piivV~nK~Dl~ 239 (254)
...+.|+++|+||+|+.
T Consensus 257 ~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred cccCCcEEEEEECcCch
Confidence 23679999999999985
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.74 E-value=1.7e-08 Score=85.71 Aligned_cols=62 Identities=31% Similarity=0.449 Sum_probs=40.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
....+++++|.+|+|||||+|++.+.+...+++.|++|+....... +..+.++||||+....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPK 179 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCCC
Confidence 4567899999999999999999999887778889999877643222 3478999999987654
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.73 E-value=2.2e-08 Score=91.34 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCce--------------EEEEEEE---------------E
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILGI---------------C 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~tt--------------~~~~~~~---------------~ 158 (254)
+...|+++|.+|+||||+++.+. +.+...+...+... ...+... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 66544333321100 0011100 0
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCE-EEEEecCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~pi-ivV~nK~D 237 (254)
...+..+.||||||........+.. . ..... ...+|.+++|+|+..+..... ....+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~e-l-~~~~~-~i~pd~vllVvDa~~g~~~~~-~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEE-M-LQVAN-AIQPDNIVYVMDASIGQACEA-QAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHH-H-HHHHH-HHCCSEEEEEEETTCCTTHHH-HHHHHHH----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHH-H-HHHHh-hhcCceEEEEEeccccccHHH-HHHHHHh----hcCceEEEEeCCc
Confidence 1156789999999976432111111 1 11112 237899999999988644222 2222111 2575 89999999
Q ss_pred CCCh
Q 025346 238 LIKP 241 (254)
Q Consensus 238 l~~~ 241 (254)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 9754
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.60 E-value=6.7e-08 Score=89.63 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEE-------ecCCeeEEEEecCCCcccc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~~~liDtpG~~~~~ 177 (254)
+..+|+++|.+|+|||||+|++++..... +.+++|+....+.. ...+..+.++||||+.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 44679999999999999999999987431 33333322222221 2356789999999987644
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.48 E-value=2.3e-07 Score=83.18 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=67.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCC------------------------ceEEEE----EEEEec
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQ------------------------TTRHRI----LGICSG 160 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~------------------------tt~~~~----~~~~~~ 160 (254)
+..++++|.+|+||||+++.+... +...+...+. ++.+.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999998752 2221111100 111100 000012
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHH--HccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCC-C-EEEEEecC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS--AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKK 236 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~--~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~-p-iivV~nK~ 236 (254)
.+..+.++||||..... ...+..... .+..+|.+++|+|+..+.... ..... +.... | ..+|+||+
T Consensus 179 ~~~D~vIIDT~G~~~~~-----~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~-~~~~~----~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-----KGLLEEMKQIKEITNPDEIILVIDGTIGQQAG-IQAKA----FKEAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSH-----HHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH-HHHHH----HHTTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCcccc-----HHHHHHHHHHHHHhcCcceeEEeeccccHHHH-HHHHH----HhhcccCCeEEEEeCC
Confidence 45679999999975432 111122222 233789999999997754322 22222 12335 5 88999999
Q ss_pred CCCCh
Q 025346 237 DLIKP 241 (254)
Q Consensus 237 Dl~~~ 241 (254)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98654
No 213
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.48 E-value=1.6e-07 Score=83.32 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=55.8
Q ss_pred EEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCC------------CchhHHHHHHHhhcc-
Q 025346 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK------------APERIDEILEEGVGD- 222 (254)
Q Consensus 156 ~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~------------~~~~~~~~~~~~~~~- 222 (254)
..+...+..+.+|||+|. ..+. ..+..++.+++++|||+|+++ ++.....++..+...
T Consensus 210 ~~~~~~~v~l~iwDtaGQ--e~~r-------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQ--RDER-------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp EEEEETTEEEEEEEECCS--GGGG-------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred EEeecCCccceecccchh--hhhh-------hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 344556789999999994 3333 334567899999999999987 234556677766654
Q ss_pred cCCCCCEEEEEecCCCCC
Q 025346 223 HKDKLPILLVLNKKDLIK 240 (254)
Q Consensus 223 ~~~~~piivV~nK~Dl~~ 240 (254)
...+.|++||+||+|+..
T Consensus 281 ~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLA 298 (402)
T ss_dssp TCSSCCEEEEEECHHHHH
T ss_pred cCCCCeEEEEEEChhhhh
Confidence 236799999999999854
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.47 E-value=5.2e-08 Score=81.73 Aligned_cols=59 Identities=36% Similarity=0.495 Sum_probs=38.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~ 177 (254)
.+++++|.+|+|||||+|++.+.....+++.+++|........ +..+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCc
Confidence 5899999999999999999999887667778887765432221 3478999999987654
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.45 E-value=1.2e-07 Score=83.07 Aligned_cols=76 Identities=21% Similarity=0.119 Sum_probs=53.3
Q ss_pred EEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC------------chhHHHHHHHhhcc
Q 025346 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD 222 (254)
Q Consensus 155 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~------------~~~~~~~~~~~~~~ 222 (254)
...+...+..+.+|||+|... +...+..++.+++++|||+|+++. ..+...++..+...
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRS---------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp EEEEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EEEeeeCCeEEEEEeccchhh---------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 344556688999999999422 224455678999999999999872 34445566666553
Q ss_pred -cCCCCCEEEEEecCCCC
Q 025346 223 -HKDKLPILLVLNKKDLI 239 (254)
Q Consensus 223 -~~~~~piivV~nK~Dl~ 239 (254)
...+.|+++|+||+|+.
T Consensus 264 ~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 264 RVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred hhhCCCCEEEEEEChhhh
Confidence 23679999999999986
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.44 E-value=2.8e-07 Score=74.82 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
+.++++++|.+|+|||||+++++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998653
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.35 E-value=2.8e-06 Score=79.46 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred eeEEEEecCCCcccchhh----hhHHHHHHHHHHccCc-cEEEEEEeCCCCch--hHHHHHHHhhcccCCCCCEEEEEec
Q 025346 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGINA-DCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 163 ~~~~liDtpG~~~~~~~~----~~~~~~~~~~~~~~~~-d~iv~vid~~~~~~--~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
..+.++|.||+...+... ........+..++... .+++.+++...... ........+ ...+.++++|+||
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v---~~~g~rtI~VlTK 223 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV---DPEGDRTIGILTK 223 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH---CSSCCSEEEEEEC
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH---hhcCCceEEEecc
Confidence 358999999976543221 2223334455555544 55556666543221 222222222 2346799999999
Q ss_pred CCCCChH
Q 025346 236 KDLIKPG 242 (254)
Q Consensus 236 ~Dl~~~~ 242 (254)
.|++...
T Consensus 224 ~Dlv~~g 230 (608)
T 3szr_A 224 PDLVDKG 230 (608)
T ss_dssp GGGSSSS
T ss_pred hhhcCcc
Confidence 9998654
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.35 E-value=2e-06 Score=76.50 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccc----cccCCCCceEEEEEEEEecC-CeeEEEEecCCCcccchhhhhHHHHHH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~----~~~~~~~tt~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~ 188 (254)
....++++|++|+|||||+|.+.+.... .......+++..+ ..... ...+.++|+||+.... ....... +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-FPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-CCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-HHHHHHH-HH
Confidence 3448999999999999999999984321 1111111222111 11222 2368999999975321 1222221 11
Q ss_pred HHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 189 ~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
. .+...+.+++ ++... .+..+..+...+.. .+.|+++|.||.|++
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSD 188 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCccc
Confidence 1 1233455554 77664 33333333333332 368999999999986
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.6e-07 Score=80.38 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=63.1
Q ss_pred HHHHHHhcCccccccCCCCceEEEEEEEEecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-
Q 025346 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA- 208 (254)
Q Consensus 130 sl~~~~~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~- 208 (254)
+++.++....+.. ..+.+|..+........+ ..+.+||| ++++..+.. .++.++|++++|+|++++
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~-~~~~iwD~----qer~~~l~~-------~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDET-GSGVIENV----LHRKNLLTK-------PHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCS-SSEEEEEE----CCCSCEETT-------TTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCC-CeEEEEEE----ccccceeec-------cccccCCEEEEEEeCCCCC
Confidence 5777777666631 233333333333223232 37999999 333444332 468999999999999874
Q ss_pred --chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhH
Q 025346 209 --PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (254)
Q Consensus 209 --~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~ 244 (254)
+..+..|+..+.. .++|+++|+||+|+.+.+++
T Consensus 99 ~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 99 TSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp CCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH
Confidence 3455666654432 47899999999999887654
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=3.4e-06 Score=75.57 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCce--------------EEEEEEE---------------E
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILGI---------------C 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~tt--------------~~~~~~~---------------~ 158 (254)
++..++++|.+|+||||++..+. +.+...+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999887 33332222111100 0000000 0
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
...+..+.++||||........+... ..+.. ...+|.+++|+|+..+..... ....+.. .-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el--~~i~~-~~~pd~vlLVvDA~~gq~a~~-~a~~f~~---~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEM--KQISN-VIHPHEVILVIDGTIGQQAYN-QALAFKE---ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHH--HHHHH-HHCCSEEEEEEEGGGGGGHHH-HHHHHHH---SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHH--HHHHH-hhcCceEEEEEeCCCchhHHH-HHHHHHh---hCCCeEEEEECCCC
Confidence 01347899999999755432222221 22222 346899999999987533322 2222221 12356799999999
Q ss_pred CChH
Q 025346 239 IKPG 242 (254)
Q Consensus 239 ~~~~ 242 (254)
....
T Consensus 252 ~~~g 255 (443)
T 3dm5_A 252 SAKG 255 (443)
T ss_dssp CSSH
T ss_pred cccc
Confidence 7654
No 221
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.26 E-value=6.8e-07 Score=78.09 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=49.6
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCC----------C--CchhHHHHHHHhhccc-CCCC
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC----------K--APERIDEILEEGVGDH-KDKL 227 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~----------~--~~~~~~~~~~~~~~~~-~~~~ 227 (254)
....+.+|||+|. ..+.. .+..++++++++|+|+|++ + .+.....++..+.... ..+.
T Consensus 181 ~~v~l~iwDtaGQ--e~~r~-------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGGQ--RNERR-------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECCS--TTGGG-------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCCc--hhhhH-------HHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 4578999999994 33333 3456789999999999987 2 2344556666665532 3679
Q ss_pred CEEEEEecCCCCC
Q 025346 228 PILLVLNKKDLIK 240 (254)
Q Consensus 228 piivV~nK~Dl~~ 240 (254)
|+++|+||+|+..
T Consensus 252 piiLvgNK~DL~~ 264 (354)
T 2xtz_A 252 SFMLFLNKFDIFE 264 (354)
T ss_dssp EEEEEEECHHHHH
T ss_pred eEEEEEECcchhh
Confidence 9999999999853
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.09 E-value=9e-06 Score=72.70 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=66.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCc--------------eEEEEEE---------------EE
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--------------TRHRILG---------------IC 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~t--------------t~~~~~~---------------~~ 158 (254)
++..++++|++|+||||++..+. +.++..+...+.. ....... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45689999999999999999887 3322111100000 0000000 00
Q ss_pred ecCCeeEEEEecCCCcc--cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecC
Q 025346 159 SGPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~ 236 (254)
...+..+.++||||... .....+.. . ..+... ..++.+++|+|+..+.... .....+... -.+..+|+||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~e-l-~~i~~~-~~pd~vlLVlDa~~gq~a~-~~a~~f~~~---~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEE-M-KEMYDV-LKPDDVILVIDASIGQKAY-DLASRFHQA---SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHH-H-HHHHHH-HCCSEEEEEEEGGGGGGGH-HHHHHHHHH---CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHH-H-HHHHHh-hCCcceEEEEeCccchHHH-HHHHHHhcc---cCCcEEEEecc
Confidence 12356799999999654 32222211 1 222222 2578999999998743322 222222211 14578999999
Q ss_pred CCCCh
Q 025346 237 DLIKP 241 (254)
Q Consensus 237 Dl~~~ 241 (254)
|....
T Consensus 249 D~~a~ 253 (433)
T 3kl4_A 249 DGTAK 253 (433)
T ss_dssp GGCSC
T ss_pred ccccc
Confidence 98654
No 223
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.87 E-value=4e-05 Score=68.77 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=41.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC---------------ccccccCCCCceEEEEEEEEec-----------CCeeEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSG-----------PEYQMI 166 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~---------------~~~~~~~~~~tt~~~~~~~~~~-----------~~~~~~ 166 (254)
.+...|.|+|++++|||+|+|.+++. +....+. .++++..+.+...+ ....+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~-~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSW-RGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCS-CCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecC-CCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 34567999999999999999999864 2221221 22333333333222 246799
Q ss_pred EEecCCCcccc
Q 025346 167 LYDTPGIIEKK 177 (254)
Q Consensus 167 liDtpG~~~~~ 177 (254)
++||||+.+..
T Consensus 144 llDTeG~~~~~ 154 (447)
T 3q5d_A 144 LMDTQGTFDSQ 154 (447)
T ss_dssp EEEEECCCSSH
T ss_pred EEcCCcccccc
Confidence 99999987654
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.85 E-value=5.2e-05 Score=64.52 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=65.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHh------cCccccccCCCCce--------------EEEEEE---------------EEe
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG---------------ICS 159 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~------~~~~~~~~~~~~tt--------------~~~~~~---------------~~~ 159 (254)
+..++++|++|+||||++..+. +.+...+...+... ...... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999887 23322111111000 000000 001
Q ss_pred cCCeeEEEEecCCCcc--cchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecC
Q 025346 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (254)
Q Consensus 160 ~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~ 236 (254)
..+..+.++||||... .....+.. ...+. ....+|.+++|+|+..+. ........+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~e--l~~i~-~~~~~d~vllVvda~~g~-~~~~~~~~~~----~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEE--MKNIY-EAIKPDEVTLVIDASIGQ-KAYDLASKFN----QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHH--HHHHH-HHHCCSEEEEEEEGGGGG-GHHHHHHHHH----HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHH--HHHHH-HHhcCCEEEEEeeCCchH-HHHHHHHHHH----hhCCCCEEEEeCC
Confidence 1456799999999755 21111111 11111 234689999999997642 2222222221 2356 78899999
Q ss_pred CCCCh
Q 025346 237 DLIKP 241 (254)
Q Consensus 237 Dl~~~ 241 (254)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98654
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.81 E-value=5.4e-05 Score=67.78 Aligned_cols=120 Identities=23% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh-------cCccccccCCCCce--------------EEEEEE---------------E
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT--------------RHRILG---------------I 157 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~-------~~~~~~~~~~~~tt--------------~~~~~~---------------~ 157 (254)
++..++++|.+|+||||++..+. +.+...+...+... .+.+.. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 35678899999999999999887 44433222222110 000000 0
Q ss_pred EecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecC
Q 025346 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (254)
Q Consensus 158 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~ 236 (254)
....+..+.|+||||........+... ... .....++.+++|+|+..+... ......+. ...+ .-+|+||+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L--~~~-~~~~~p~~vllVvda~~g~~~-~~~~~~f~----~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEI--KQV-HASINPVETLFVVDAMTGQDA-ANTAKAFN----EALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHH--HHH-HHHSCCSEEEEEEETTBCTTH-HHHHHHHH----HHSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHH--HHH-HHhhcCcceeEEeecchhHHH-HHHHHHHh----ccCCCeEEEEecC
Confidence 012467899999999654321111111 111 224578999999999865332 22222221 1234 34789999
Q ss_pred CCCCh
Q 025346 237 DLIKP 241 (254)
Q Consensus 237 Dl~~~ 241 (254)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 98643
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.65 E-value=0.00022 Score=60.53 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC-------ccccccCCCC--ceE------------EEEEEE---------EecCCe
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQ--TTR------------HRILGI---------CSGPEY 163 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~-------~~~~~~~~~~--tt~------------~~~~~~---------~~~~~~ 163 (254)
++..++++|++|+||||++..+.+. ++..+...+. ... ...... ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4568999999999999999987632 1111111110 000 000000 011346
Q ss_pred eEEEEecCCCcccchhhhhHHHHHHHHHHcc--CccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 164 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
.+.++||||....... .+..+...+. ..+.+++|+|++.....+.++...+ ..-...-+|+||.|....
T Consensus 184 dlvIiDT~G~~~~~~~-----~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~----~~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQ-----YIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRF----SSVPVNQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHH-----HHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTT----SSSCCCEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHH-----HHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHH----hcCCCCEEEEeCCCcccc
Confidence 7999999997543211 1222333333 4678899999887544444433222 111124567799998644
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.57 E-value=0.00014 Score=61.43 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
.++...+..+|+|+.|+|+.++.......+..++ .+.|.++|+||+|+.+....+...+.+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 5566778999999999999885544323333333 468999999999999876666655554
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.55 E-value=0.00085 Score=57.17 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------------eEEEEEEEE---------------
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------------TRHRILGIC--------------- 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------------t~~~~~~~~--------------- 158 (254)
++..++++|++|+||||+++.+.+. ++......... ....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999998742 11111100000 000000000
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHH--HHHH-HHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEec
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMM--MKNV-RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~--~~~~-~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK 235 (254)
...+....++||+|........+.... ...+ ......++.+++++|+....... ..+..+.+.. + ..++++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~-~~~~~~~~~~--~-~t~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL-EQAKKFHEAV--G-LTGVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH-HHHHHHHHHH--C-CSEEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH-HHHHHHHHHc--C-CcEEEEEC
Confidence 011345779999997654332222211 1111 12345688889999987754333 2333322211 2 34678899
Q ss_pred CCCCC
Q 025346 236 KDLIK 240 (254)
Q Consensus 236 ~Dl~~ 240 (254)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 88653
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.54 E-value=0.00019 Score=61.83 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=64.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc------cccccCCCCc--------------eEEEEEEEE--------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQT--------------TRHRILGIC-------------- 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~------~~~~~~~~~t--------------t~~~~~~~~-------------- 158 (254)
.++..++++|++|+||||+++.+.+.- +......... .........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456789999999999999999987531 1111000000 000000000
Q ss_pred -ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCC
Q 025346 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (254)
Q Consensus 159 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~D 237 (254)
...+..+.++||+|........+... ..... .-.+|-.++++|+.... ........+.+.. ....+++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL--~~i~r-al~~de~llvLDa~t~~-~~~~~~~~~~~~~---~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEM--KKIAR-VTKPNLVIFVGDALAGN-AIVEQARQFNEAV---KIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHH--HHHHH-HHCCSEEEEEEEGGGTT-HHHHHHHHHHHHS---CCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHH--HHHHH-HhcCCCCEEEEecHHHH-HHHHHHHHHHHhc---CCCEEEEeCcC
Confidence 01234577899999755433333222 11112 23478899999987653 2223333322211 23477889999
Q ss_pred CCC
Q 025346 238 LIK 240 (254)
Q Consensus 238 l~~ 240 (254)
...
T Consensus 280 ~~a 282 (328)
T 3e70_C 280 ADA 282 (328)
T ss_dssp GCS
T ss_pred Ccc
Confidence 643
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.46 E-value=0.00057 Score=61.91 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCce-------E---EEEEEEE------------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-------R---HRILGIC------------------ 158 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~tt-------~---~~~~~~~------------------ 158 (254)
..+..++++|++|+||||+++.+.+. ++.......... . .....++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 45668999999999999999988753 221111111100 0 0000011
Q ss_pred -ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHc-----cCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEE
Q 025346 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232 (254)
Q Consensus 159 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~-----~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV 232 (254)
...+..+.++||+|........+... ....... ...+-+++|+|++.+...+. ....+.... ++ ..+|
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL--~kiv~iar~l~~~~P~evLLvLDattGq~al~-~ak~f~~~~--~i-tgvI 444 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEEL--KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEAV--GL-TGIT 444 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHH--HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-HHHHHHHHT--CC-SEEE
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHH--HHHHHHHHHhccCCCCeeEEEecCcccHHHHH-HHHHHHhhc--CC-CEEE
Confidence 01346789999999765443333211 1222211 23668899999877533332 222222211 22 3578
Q ss_pred EecCCCC
Q 025346 233 LNKKDLI 239 (254)
Q Consensus 233 ~nK~Dl~ 239 (254)
+||.|-.
T Consensus 445 lTKLD~t 451 (503)
T 2yhs_A 445 LTKLDGT 451 (503)
T ss_dssp EECGGGC
T ss_pred EEcCCCc
Confidence 8999964
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.44 E-value=0.00096 Score=57.27 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=40.7
Q ss_pred CCeeEEEEecCCCcccchhhhhHHHHHHHHHH-----ccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEe
Q 025346 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLN 234 (254)
Q Consensus 161 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~n 234 (254)
.+..+.++||||........++.. ...... ...+|.+++|+++......+... ... ....+ .-+|+|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL--~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~-~~~----~~~~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAEL--EKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQA-EEF----SKVADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHH--HHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHH-HHH----TTTSCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHH--HHHHHHHhcccCCCCceEEEEEECCCcHHHHHHH-HHH----hhcCCCcEEEEe
Confidence 356799999999654322222211 111111 13478999999998543333222 222 22233 357899
Q ss_pred cCCCCCh
Q 025346 235 KKDLIKP 241 (254)
Q Consensus 235 K~Dl~~~ 241 (254)
|+|....
T Consensus 263 k~d~~~~ 269 (320)
T 1zu4_A 263 KMDSTSK 269 (320)
T ss_dssp CGGGCSC
T ss_pred CCCCCCc
Confidence 9997543
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00037 Score=59.31 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=37.3
Q ss_pred HccCccEEEEEEeCCCC---chhHHHHHHHhhcccCCCCCEEEEEecCCCCChHh
Q 025346 192 AGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~---~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~ 243 (254)
++.++|++++|+|++++ +..++.++..+.. .++|+++|+||+|+.++++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~ 127 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEE 127 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccc
Confidence 58999999999999864 2344556554322 5799999999999998763
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.24 E-value=8.2e-05 Score=63.56 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCC-------CceEEEEEEEEecCCeeEEEEecCCCcc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~~~liDtpG~~~ 175 (254)
++..++++|++|+|||||+|.+.+......+... ++|..... .... .-.++||||+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 3568999999999999999999976433222222 23322111 1111 247899999765
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.20 E-value=0.00018 Score=60.08 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChHhHHHHHHHH
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEVT 251 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~~~~~~~~~~ 251 (254)
.++...+..+|+|+.|+|+..+.......+. ++ ++|.++|+||+|+.+++..+...+.+
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~ 71 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFF 71 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHH
Confidence 3455668999999999999875433211111 11 78999999999999887666555544
No 235
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.18 E-value=0.00072 Score=54.40 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHHccCccEEEEEEeCCCCc-hhHHHHH---HHhhccc--CCCCCEEEEEecC-CCCCh
Q 025346 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKP 241 (254)
Q Consensus 185 ~~~~~~~~~~~~d~iv~vid~~~~~-~~~~~~~---~~~~~~~--~~~~piivV~nK~-Dl~~~ 241 (254)
++..|..|+.++|++|||+|+++.. .+....+ ..++... ..+.|++|.+||. |+...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 3345778899999999999998742 1233333 3333332 2678999999995 67543
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.13 E-value=0.0018 Score=55.26 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..++++|++|+||||++..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 455799999999999999998874
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.08 E-value=0.00078 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
.+..++++|++|+|||||+|.+. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35679999999999999999998 53
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.07 E-value=0.00043 Score=61.69 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------------eEEEEEEE------------E---
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------------TRHRILGI------------C--- 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------------t~~~~~~~------------~--- 158 (254)
++..++++|++|+||||++..+.+. ++..+...+.. ....+... +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999987632 11111100000 00011100 0
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~D 237 (254)
...+..+.++||||........+... ..... ...++.+++|+|+....... .....+.. ..+ .-+|+||+|
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el--~~i~~-~~~pd~vlLVvDa~tgq~av-~~a~~f~~----~l~i~GVIlTKlD 248 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGEL--ARLKE-VLGPDEVLLVLDAMTGQEAL-SVARAFDE----KVGVTGLVLTKLD 248 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHH--HHHHH-HHCCSEEEEEEEGGGTTHHH-HHHHHHHH----HTCCCEEEEESGG
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHH--HHhhh-ccCCceEEEEEeccchHHHH-HHHHHHHh----cCCceEEEEeCcC
Confidence 01456799999999654321112111 11111 23688999999987643222 22222211 222 567889999
Q ss_pred CCC
Q 025346 238 LIK 240 (254)
Q Consensus 238 l~~ 240 (254)
...
T Consensus 249 ~~~ 251 (425)
T 2ffh_A 249 GDA 251 (425)
T ss_dssp GCS
T ss_pred Ccc
Confidence 754
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.99 E-value=0.00047 Score=60.08 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCcc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKL 140 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~ 140 (254)
.+..++++|++|+|||||+|.+.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 355899999999999999999998654
No 240
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.91 E-value=0.0012 Score=52.18 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=43.2
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcc--cCCCCCEEEEEecCCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD--HKDKLPILLVLNKKDLI 239 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~--~~~~~piivV~nK~Dl~ 239 (254)
...+.++|||+.... .....+..+|.+++++..+.........+..+... ...+.++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSSH-----------HHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCCH-----------HHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 467999999984421 12233556899999999877433344433333221 13457789999999964
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
.
T Consensus 144 ~ 144 (206)
T 4dzz_A 144 A 144 (206)
T ss_dssp E
T ss_pred c
Confidence 3
No 241
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.89 E-value=0.00078 Score=58.96 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCChH
Q 025346 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (254)
Q Consensus 185 ~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~~ 242 (254)
+...+..+.+.++++++|+|+++........+... ..+.|+++|+||+|+.+.+
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF----VGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH----SSSSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH----hCCCcEEEEEEChhcCCcc
Confidence 33445566778899999999987432221222222 2378999999999998654
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.80 E-value=0.0006 Score=54.38 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..++..++++|++|+|||||++.+++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456678999999999999999999864
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.76 E-value=0.001 Score=56.43 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKL 140 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~ 140 (254)
...++++|++|+|||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45799999999999999999997653
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.68 E-value=0.0024 Score=54.47 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred HccCccEEEEEEeCCCCchhHHHHHHHhhc-ccCCCCCEEEEEecCCCCChHh----HHHHHHHH
Q 025346 192 AGINADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGE----IAKKLEVT 251 (254)
Q Consensus 192 ~~~~~d~iv~vid~~~~~~~~~~~~~~~~~-~~~~~~piivV~nK~Dl~~~~~----~~~~~~~~ 251 (254)
.+.++|.+++|+|+..+..... .+...+. ....++|.++|+||+||.++.+ +....+.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y 146 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY 146 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH
Confidence 3789999999999986443333 3333321 1135789999999999998754 44444443
No 245
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.68 E-value=0.00097 Score=58.35 Aligned_cols=51 Identities=27% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCCCCh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~~~ 241 (254)
..+..+...++++++|+|++++.......+...+ .+.|+++|+||+|+.+.
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCT
T ss_pred HHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCC
Confidence 3444556788999999999986543322233322 36899999999999875
No 246
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.67 E-value=0.0088 Score=53.54 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc------------------CccccccCCCCceEEEEEEE----E---ecCCeeEEE
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG------------------QKLSIVTNKPQTTRHRILGI----C---SGPEYQMIL 167 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~------------------~~~~~~~~~~~tt~~~~~~~----~---~~~~~~~~l 167 (254)
.+...|.++|..++|||+|+|.+++ ..|........+|....... . ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3445788999999999999996541 12321112223444333221 1 233467999
Q ss_pred EecCCCcccc
Q 025346 168 YDTPGIIEKK 177 (254)
Q Consensus 168 iDtpG~~~~~ 177 (254)
+||.|+.+..
T Consensus 145 lDTEG~~d~~ 154 (457)
T 4ido_A 145 MDTQGTFDSQ 154 (457)
T ss_dssp EEECCBTCTT
T ss_pred EeccCCCCcc
Confidence 9999987654
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.62 E-value=0.016 Score=48.92 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------------eEEEEEEE------------E---
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------------TRHRILGI------------C--- 158 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------------t~~~~~~~------------~--- 158 (254)
++..++++|++|+||||++..+.+. +.......+.. ........ +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999987642 11111100000 00011000 0
Q ss_pred ecCCeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCC-EEEEEecCC
Q 025346 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (254)
Q Consensus 159 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~p-iivV~nK~D 237 (254)
...+..+.++||||........+... ...... ..++.+++|+|+... ............ ..+ .-+|+||+|
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l--~~~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~~~----~~~i~givlnk~d 248 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGEL--ARLKEV-LGPDEVLLVLDAMTG-QEALSVARAFDE----KVGVTGLVLTKLD 248 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHH--HHHHHH-HCCSEEEEEEEGGGT-HHHHHHHHHHHH----HTCCCEEEEECGG
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHH--HHHhhh-cCCCEEEEEEeCCCc-HHHHHHHHHHhh----cCCCCEEEEECCC
Confidence 01346799999998654322222221 111111 258888999998754 222222222211 223 457899999
Q ss_pred CCC
Q 025346 238 LIK 240 (254)
Q Consensus 238 l~~ 240 (254)
...
T Consensus 249 ~~~ 251 (295)
T 1ls1_A 249 GDA 251 (295)
T ss_dssp GCS
T ss_pred CCc
Confidence 754
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0012 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++..++++|++|+|||||++.+.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999863
No 249
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.61 E-value=0.00023 Score=64.34 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=52.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCccccccCCCCceEEEEEE----EEecCCeeEEEEecCCCcccchhhhhHH---HH
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG----ICSGPEYQMILYDTPGIIEKKIHMLDSM---MM 186 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~~~~~~~~~~tt~~~~~~----~~~~~~~~~~liDtpG~~~~~~~~~~~~---~~ 186 (254)
....|+++|.+|+||||+.+++...-.. ... .+...... ...+......+||+.| +..+...... ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l 111 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAAL 111 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHH
Confidence 3458999999999999999998754211 111 11110000 0001112334677776 2111111111 11
Q ss_pred HHHHHHccCccEEEEEEeCCCCchhHHHHHHHhh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGV 220 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~ 220 (254)
.....++....+.++|+|+++........+....
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~ 145 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 2224556567888999999986554444444433
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.56 E-value=0.001 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..++++|++|+|||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999986
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.56 E-value=0.00037 Score=55.10 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=24.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcCccc-cccCCCCceEE
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRH 152 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~~~~-~~~~~~~tt~~ 152 (254)
.|+++||+|+|||||+++++..... .....+.||+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 4899999999999999999854211 12344455543
No 252
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.47 E-value=0.014 Score=49.22 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=39.8
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chhHHHHHHHhhcc-cCCCCCEE-EEEecCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGD-HKDKLPIL-LVLNKKDL 238 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~~~~~~~~~~~~-~~~~~pii-vV~nK~Dl 238 (254)
...+.++|||+...... +...+..+|.+++|+..+.. .......+..+... ...+.+++ +|+|+++-
T Consensus 156 ~yD~ViiD~p~~~~~~~----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG----------FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG----------GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH----------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46789999988433210 11235789999999987652 33333333333221 12455654 99999994
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.43 E-value=0.0015 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445668999999999999999999864
No 254
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.42 E-value=0.00049 Score=64.11 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.8
Q ss_pred HhhhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++...|......+.++.. ...++..++++|++|+|||||++.+.+-
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl--------~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITF--------HIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEE--------ECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEEEEEECCCCCccccceEE--------EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3555666666544445565553 4566789999999999999999999874
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.34 E-value=0.0028 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999875
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.33 E-value=0.0012 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999999875
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.32 E-value=0.0022 Score=50.53 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++..++++|++|+||||+++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457999999999999999999864
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.32 E-value=0.0022 Score=51.10 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345668999999999999999998864
No 259
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.30 E-value=0.00069 Score=56.90 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3455678999999999999999999875
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.28 E-value=0.0023 Score=51.80 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+++..++++|++|+|||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45668999999999999999999864
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.27 E-value=0.0021 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 262
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.22 E-value=0.0006 Score=58.15 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=35.7
Q ss_pred HhhhhhccCCcCCCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++.+.|......+.++.+ ...++..++++|++|+|||||++.+.+-
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl--------~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSF--------TVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEE--------EECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEEEEEEcCCCCceeeeeeE--------EEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 4555666666433334455443 4466779999999999999999999874
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.19 E-value=0.0027 Score=50.56 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988753
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.18 E-value=0.0023 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++++|++|+||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999854
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.13 E-value=0.0033 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++..++++|++|+||||+++.+.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567999999999999999999865
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.12 E-value=0.0036 Score=51.12 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456678999999999999999999875
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.042 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+..+++.|+||+|||+++..+.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999999875
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.99 E-value=0.0039 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988764
No 269
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.053 Score=48.37 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+..+++.|+||+|||+++..+.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344567999999999999999998853
No 270
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.97 E-value=0.0043 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
++..++++|++|+||||+++.+.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998764
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.94 E-value=0.0044 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~ 136 (254)
++..++++|++|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45579999999999999999644
No 272
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.94 E-value=0.0048 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345668999999999999999999875
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.91 E-value=0.0052 Score=50.23 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566789999999999999999998753
No 274
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.88 E-value=0.0062 Score=51.36 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHHHccCccEEEEEEeCCCCch-hHHHHHH---Hhhccc--CCCCCEEEEEec-CCCCCh
Q 025346 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKP 241 (254)
Q Consensus 187 ~~~~~~~~~~d~iv~vid~~~~~~-~~~~~~~---~~~~~~--~~~~piivV~nK-~Dl~~~ 241 (254)
..|..|+.++|++|||||+++... +....+. .++... ..+.|++|.+|| .|+...
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 446788999999999999987421 1222222 223221 257999999997 588643
No 275
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.88 E-value=0.034 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....+++.|++|+|||+++..+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345699999999999999999864
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.86 E-value=0.0056 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
.++..++++|+.|+|||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455679999999999999999998754
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.84 E-value=0.0056 Score=50.84 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999999875
No 278
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.84 E-value=0.12 Score=42.00 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||+++..+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999875
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.81 E-value=0.0064 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+||||+++.+.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.80 E-value=0.0051 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..++++|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999874
No 281
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.79 E-value=0.092 Score=44.70 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||+++..+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45799999999999999999875
No 282
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.78 E-value=0.087 Score=43.38 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.....+++.|++|+|||+++..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457999999999999999988753
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.77 E-value=0.0061 Score=50.18 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345668999999999999999999875
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.75 E-value=0.0065 Score=50.40 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456678999999999999999999875
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.75 E-value=0.0061 Score=50.77 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3455678999999999999999999875
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.74 E-value=0.0063 Score=50.36 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445668999999999999999999875
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.74 E-value=0.0064 Score=49.42 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999875
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.72 E-value=0.0064 Score=51.71 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+|||||++.+.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 556778999999999999999998875
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.72 E-value=0.0068 Score=50.43 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3456678999999999999999999875
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.71 E-value=0.006 Score=48.16 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.71 E-value=0.006 Score=50.66 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+++.+.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45668999999999999999998863
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.69 E-value=0.0071 Score=50.08 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999999875
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.68 E-value=0.0072 Score=50.47 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456678999999999999999999875
No 294
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.68 E-value=0.0062 Score=49.06 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+|||||++.+.+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45567999999999999999999875
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.67 E-value=0.0074 Score=50.27 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456678999999999999999999985
No 296
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.64 E-value=0.0073 Score=49.42 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345668999999999999999999875
No 297
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.63 E-value=0.038 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..+++.|++|+|||+++..+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677889999999999998874
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.61 E-value=0.0062 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.60 E-value=0.0079 Score=49.55 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345668999999999999999999985
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.60 E-value=0.0077 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345668999999999999999999875
No 301
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.062 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..+++.||||+|||+++..+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 44567999999999999999998853
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.58 E-value=0.0082 Score=49.94 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3455678999999999999999999875
No 303
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.55 E-value=0.0084 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++++|++|+|||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999875
No 304
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.54 E-value=0.0081 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345668999999999999999999875
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.54 E-value=0.012 Score=46.61 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+||||+++.+.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445568999999999999999999875
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.52 E-value=0.0079 Score=47.48 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44668999999999999999988753
No 307
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.51 E-value=0.004 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++..++++|++|+|||||++.+.+-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456689999999999999999998753
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.51 E-value=0.0089 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~ 136 (254)
+..++++|++|+||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.50 E-value=0.0056 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHh-cC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMI-GQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~-~~ 138 (254)
.++..++++|++|+||||+++.+. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345679999999999999999998 54
No 310
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0047 Score=54.36 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred hhhhhccCCcC-CCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 82 SFLSLSEKPDR-NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 82 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++.+.|.. ....+.++.. ....+..++++|++|+|||||++.+.+-
T Consensus 21 ~~~~l~~~y~~~~~~~L~~vsl--------~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 21 TVKDLTAKYTEGGNAILENISF--------SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEEESSSSSCCSEEEEEE--------EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEEEEEecCCCeEEeeceeE--------EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44555666632 2334555543 4456778999999999999999999874
No 311
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.13 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..+++.|+||+|||.++..+.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34557999999999999999998753
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.46 E-value=0.0085 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++..++++|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45567899999999999999998876
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.46 E-value=0.0089 Score=49.37 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++..++++|++|+|||||++.+.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345668999999999999999999875
No 314
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.43 E-value=0.01 Score=50.05 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+-.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34566789999999999999999998753
No 315
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.13 Score=46.06 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..+++.|++|+|||+|+..+.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45668999999999999999998753
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.42 E-value=0.0089 Score=45.36 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.4
Q ss_pred cEEEEEeCCCCChHHHHHHH
Q 025346 116 GYVAVLGKPNVGKSTLANQM 135 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~ 135 (254)
..|+++|++|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 317
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.41 E-value=0.013 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~ 136 (254)
.+..|++.|.+|+||||+.+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999887
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.40 E-value=0.01 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+||||+...+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999998864
No 319
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.39 E-value=0.0092 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|+.|+||||+++.+.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 334566899999999999999998876
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.38 E-value=0.0078 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..++++|++|+|||||++.+.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999876
No 321
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.36 E-value=0.0099 Score=45.19 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 322
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.34 E-value=0.0079 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..+++.|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.34 E-value=0.0089 Score=46.55 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
No 324
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.32 E-value=0.011 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..|+++|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
No 325
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.32 E-value=0.012 Score=51.24 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+-.
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34556789999999999999999999753
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.31 E-value=0.014 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..|+++|++|+||||+.+.+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999988754
No 327
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.30 E-value=0.064 Score=41.89 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998875
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.29 E-value=0.012 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..|+++|++|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.25 E-value=0.011 Score=47.33 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+|||||++.+++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345566899999999999999999986
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.25 E-value=0.011 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++++|++|+|||||++.++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.23 E-value=0.0091 Score=47.07 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHhcC
Q 025346 117 YVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++++|++|+||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998864
No 332
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.23 E-value=0.0066 Score=56.25 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.2
Q ss_pred hhhhhccCCcCC-CCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 82 SFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 82 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++...|... ...+.++.. ...++..++++|++|+|||||++.+.+-
T Consensus 343 ~~~~v~~~y~~~~~~~l~~v~~--------~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 343 EFRNVTFTYPGREVPALRNINL--------KIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEEECSSSSSCCSEEEEEE--------EECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEEEEEcCCCCCccccceeE--------EEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 445555666422 334444443 3456778999999999999999999875
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.21 E-value=0.01 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...|+++|++|+||||+++.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 334
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.20 E-value=0.0076 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456778999999999999999999875
No 335
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.20 E-value=0.017 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..|++.|.+|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.19 E-value=0.014 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|+++|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 337
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.17 E-value=0.013 Score=47.46 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHh
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~ 136 (254)
..++..++++|++|+|||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3556689999999999999999887
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.16 E-value=0.013 Score=51.00 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4456778999999999999999999875
No 339
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.15 E-value=0.068 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||+++..+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999875
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.14 E-value=0.013 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 341
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.1 Score=46.27 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..+++.|+||+|||+++..+.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 44567999999999999999998853
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.14 E-value=0.017 Score=44.87 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|.+|+||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4466899999999999999998864
No 343
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.10 E-value=0.24 Score=41.10 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 344
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.09 E-value=0.014 Score=51.08 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
....+..++++|++|+|||||++.+.+-.
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34556789999999999999999999753
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.08 E-value=0.017 Score=45.39 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+..|++.|++|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455899999999999999998864
No 346
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.08 E-value=0.014 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|++|+||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.08 E-value=0.014 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
+..++++|++|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6689999999999999999998753
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.07 E-value=0.014 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...|+++|++|+||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.05 E-value=0.015 Score=50.56 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+..++++|++|+|||||++.+.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 455668999999999999999999875
No 350
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.04 E-value=0.015 Score=50.61 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
....+..++++|++|+|||||++.+.+-
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 3455678999999999999999999875
No 351
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.02 E-value=0.018 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....|+++|++|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999998873
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.01 E-value=0.012 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999998864
No 353
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.00 E-value=0.013 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..++++|++|+|||||++.+++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999874
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.99 E-value=0.016 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..++..+++.|+.|+||||+++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4455678999999999999999998764
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.98 E-value=0.016 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999998876
No 356
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.97 E-value=0.0069 Score=61.43 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=38.5
Q ss_pred hHhhhhhccCCcCC--CCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 80 ASSFLSLSEKPDRN--MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 80 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+.++..+|... .+.++++.. ...++.+++++|++|+|||||++.+++-
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl--------~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSF--------SVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEE--------EECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred eEEEEEEEEeCCCCCCCccccceeE--------EECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 35677777787533 345666654 4567789999999999999999999864
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.96 E-value=0.0067 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..++++|++|+|||||++.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998864
No 358
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.95 E-value=0.0099 Score=60.28 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=37.7
Q ss_pred HhhhhhccCCcC--CCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDR--NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++.+.|.. ..+.+++++. ..+++..++++|++|+|||||++.+++-
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl--------~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNL--------RVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEE--------EECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEeeeeCCCCCCCceeeceEE--------eecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 466677777743 3355666654 4567789999999999999999999864
No 359
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.95 E-value=0.085 Score=39.17 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+++.|++|+|||+++..+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999988653
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.94 E-value=0.014 Score=45.10 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..++++|++|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.91 E-value=0.017 Score=50.46 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
....+..++++|++|+|||||++.+.+-
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 3455678999999999999999999875
No 362
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.91 E-value=0.016 Score=44.78 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.89 E-value=0.017 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+..++++|++|+||||++..+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999999864
No 364
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.89 E-value=0.018 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.87 E-value=0.02 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..|++.|++|+||||+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.86 E-value=0.016 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|+++|++|+||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999875
No 367
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.83 E-value=0.17 Score=42.21 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.....+++.|++|+|||+++..+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987654
No 368
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.82 E-value=0.0066 Score=56.20 Aligned_cols=49 Identities=24% Similarity=0.191 Sum_probs=34.4
Q ss_pred hhhhhccCCcC-CCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 82 SFLSLSEKPDR-NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 82 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++...|.. ....+.++.. ...++..++++|++|+|||||++.+.+-
T Consensus 341 ~~~~v~~~y~~~~~~~l~~isl--------~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 341 DIDHVSFQYNDNEAPILKDINL--------SIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEEEECSCSSSCCSEEEEEE--------EECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEEEEEcCCCCCcceeeeEE--------EECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45555666643 2234455443 4466779999999999999999998864
No 369
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.82 E-value=0.016 Score=50.40 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+...++++|++|+||||+++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999998753
No 370
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.81 E-value=0.018 Score=50.31 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...+..++++|++|+|||||++.+.+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3456689999999999999999998753
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.79 E-value=0.02 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~ 136 (254)
++..++++|++|+||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.79 E-value=0.02 Score=48.27 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.1
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..|+++|++|+|||||++.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999987753
No 373
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.78 E-value=0.019 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.77 E-value=0.019 Score=45.33 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 375
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.74 E-value=0.018 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+||||+++.+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.72 E-value=0.016 Score=50.54 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+++.+++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45568999999999999999998863
No 377
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.71 E-value=0.025 Score=44.36 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHh
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~ 136 (254)
....|++.|++|+||||+++.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999998886
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.69 E-value=0.022 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..|++.|++|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 379
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.65 E-value=0.02 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 380
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.64 E-value=0.18 Score=43.92 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||+++..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.64 E-value=0.029 Score=43.34 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|.+|+||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.64 E-value=0.02 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|.+|+||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998753
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.64 E-value=0.022 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~ 136 (254)
+..|++.|++|+||||+++.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.64 E-value=0.022 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|+++|++|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 385
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.64 E-value=0.014 Score=50.70 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+++++|++|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998764
No 386
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.63 E-value=0.014 Score=50.49 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...++..++++|++|+|||||++.+.+-.
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34556689999999999999999998753
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.62 E-value=0.025 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..|++.|.+|+||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998874
No 388
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.60 E-value=0.029 Score=48.72 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=33.4
Q ss_pred ccCccEEEEEEeCCCCchhHHHHHHHhhc-ccCCCCCEEEEEecCCCCChHh---HHHHHHHH
Q 025346 193 GINADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGE---IAKKLEVT 251 (254)
Q Consensus 193 ~~~~d~iv~vid~~~~~~~~~~~~~~~~~-~~~~~~piivV~nK~Dl~~~~~---~~~~~~~~ 251 (254)
+.++|.+++|... .+..... .+...+. ....++|.++|+||+||.++.. +.+....+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y 188 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY 188 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEeC-CCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHH
Confidence 6789999977554 3321111 2222221 1124678899999999998765 34444443
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.59 E-value=0.018 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..++++|++|+|||||++.+.+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.58 E-value=0.023 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|+++|++|+||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.58 E-value=0.022 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+..++++|++|+||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988753
No 392
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.55 E-value=0.024 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 393
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.53 E-value=0.076 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....+++.|++|+|||+++..+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 345699999999999999999864
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.45 E-value=0.026 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+.++++|++|+||||++.+++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.45 E-value=0.023 Score=45.07 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
+|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 396
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.42 E-value=0.011 Score=54.82 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=34.8
Q ss_pred HhhhhhccCCcC-CCCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 81 SSFLSLSEKPDR-NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 81 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+.++...|.. ....+.++.. ...++..++++|++|+|||||++.+.+-
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl--------~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNF--------SVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEE--------EECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEEEEEEcCCCCCcceeceEE--------EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345556666643 2234455443 4466779999999999999999998874
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.38 E-value=0.014 Score=50.72 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
...+..++++|++|+|||||++.+.+-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556689999999999999999998753
No 398
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.34 E-value=0.02 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++++|+.|+||||+++.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999965
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.34 E-value=0.029 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|++|+||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 400
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.32 E-value=0.03 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+...|++.|++|+||||+.+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999998764
No 401
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.31 E-value=0.026 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
+|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.29 E-value=0.021 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=16.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.29 E-value=0.029 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..|++.|++|+||||++..+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.28 E-value=0.035 Score=44.71 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=20.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+...|+++|+||+||+|.+..+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344577899999999999988864
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.28 E-value=0.025 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..++++|++|+||||+++.+++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999999863
No 406
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.27 E-value=0.31 Score=41.01 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++.|++|+|||+++..+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 3467777799999999999864
No 407
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.26 E-value=0.099 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||+++..+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 446899999999999999988753
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.25 E-value=0.027 Score=43.34 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..++++|.+|+||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355799999999999999998865
No 409
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.22 E-value=0.028 Score=44.72 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.1
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++..++++|++|+|||||++.+++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34556799999999999999999884
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.024 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..++++|++|+|||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 46778999999999999999998865
No 411
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.15 E-value=0.023 Score=47.40 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=19.0
Q ss_pred EEEEeCCCCChHHHHHHHhc
Q 025346 118 VAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~ 137 (254)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999886
No 412
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.14 E-value=0.24 Score=47.54 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..|++.|++|+|||+|++.+...
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998753
No 413
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.13 E-value=0.031 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|+++|.+|+||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 414
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.13 E-value=0.027 Score=43.44 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+.|+++|.+|+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 415
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.13 E-value=0.027 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+||||+++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999998863
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.12 E-value=0.03 Score=48.67 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC------ccccccCCCCc--------e------EEEEEEEEe-------------
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T------RHRILGICS------------- 159 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~------~~~~~~~~~~t--------t------~~~~~~~~~------------- 159 (254)
.++..++++|++|+||||+++.+.+. ++......... + ...+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 34568999999999999999988753 11111111000 0 000000000
Q ss_pred ---cCCeeEEEEecCCCcccchhhhhHHH--HHH-HHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEE
Q 025346 160 ---GPEYQMILYDTPGIIEKKIHMLDSMM--MKN-VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (254)
Q Consensus 160 ---~~~~~~~liDtpG~~~~~~~~~~~~~--~~~-~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~ 233 (254)
..+....++||.|........+...- ... .......++-+++|+|++.+.+..... ..+... .+. .++++
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~-~~~~~~--~g~-t~iii 310 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA-REFNEV--VGI-TGLIL 310 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH-HHHHHH--TCC-CEEEE
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH-HHHHHh--cCC-eEEEE
Confidence 01234678999998654322222211 111 112345678889999976555444332 222211 122 36778
Q ss_pred ecCCCCC
Q 025346 234 NKKDLIK 240 (254)
Q Consensus 234 nK~Dl~~ 240 (254)
||.|-..
T Consensus 311 ThlD~~~ 317 (359)
T 2og2_A 311 TKLDGSA 317 (359)
T ss_dssp ESCTTCS
T ss_pred ecCcccc
Confidence 9988653
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.11 E-value=0.033 Score=44.01 Aligned_cols=27 Identities=30% Similarity=0.079 Sum_probs=23.3
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+|||||+..+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345566899999999999999999986
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.06 E-value=0.036 Score=50.81 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++..++++|++|+|||||++.+.+.-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4456689999999999999999999853
No 419
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.04 E-value=0.025 Score=46.15 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.04 E-value=0.028 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 421
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.02 E-value=0.034 Score=46.56 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456678999999999999999988754
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.01 E-value=0.032 Score=48.29 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..++.+++++|++|+|||||++.+.+.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5567789999999999999999999875
No 423
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.00 E-value=0.029 Score=42.99 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++++|++|+||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.98 E-value=0.026 Score=46.29 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+..++++|++|+||||+...+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 425
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.95 E-value=0.037 Score=44.15 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
....+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999988753
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.86 E-value=0.037 Score=43.94 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
+|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 427
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.85 E-value=0.032 Score=51.79 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++..++++|++|+|||||++.+.+-
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456778999999999999999999875
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.84 E-value=0.032 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++++|++|+||||+...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999864
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.039 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998764
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.80 E-value=0.038 Score=49.36 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 110 ~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
-+..++.+++++|++|+|||||++.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36677889999999999999999999874
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.80 E-value=0.038 Score=44.08 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|+++|+||+||+|....+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 432
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.79 E-value=0.22 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....+++.|++|+|||+++..+..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.79 E-value=0.048 Score=49.96 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++-.++++|++|+|||||++.+.+.-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566789999999999999999999853
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.77 E-value=0.036 Score=42.10 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.76 E-value=0.033 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..++++|++|+||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999998864
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.76 E-value=0.041 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+...|++.|++|+||||+.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999998754
No 437
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.75 E-value=0.047 Score=41.95 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998753
No 438
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.72 E-value=0.018 Score=45.52 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 439
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.68 E-value=0.041 Score=41.64 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 440
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.67 E-value=0.033 Score=42.44 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999988753
No 441
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.67 E-value=0.048 Score=43.98 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+..|++.|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.67 E-value=0.042 Score=44.87 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++.|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.62 E-value=0.042 Score=42.43 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 444
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.61 E-value=0.039 Score=42.81 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 445
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.60 E-value=0.035 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998764
No 446
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.56 E-value=0.045 Score=43.52 Aligned_cols=23 Identities=39% Similarity=0.391 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 447
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.54 E-value=0.038 Score=44.41 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+|||||+..+++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345566899999999999999999886
No 448
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.51 E-value=0.049 Score=42.64 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.51 E-value=0.056 Score=43.70 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
++..|++.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 556899999999999999998864
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.44 E-value=0.037 Score=45.91 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 399999999999999999875
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.35 E-value=0.054 Score=47.36 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....+..++++|++|+|||||++.+.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345566899999999999999998875
No 452
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.29 E-value=0.21 Score=42.98 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
....+++.|++|+|||+++..+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.26 E-value=0.051 Score=43.58 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 454
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.064 Score=49.89 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++..++++|++|+|||||++.+.+..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3567789999999999999999999753
No 455
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.17 E-value=0.058 Score=43.91 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~ 136 (254)
+..+++.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 456
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.07 E-value=0.34 Score=41.99 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCChHHHHHHHh
Q 025346 116 GYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~ 136 (254)
...+++|++|+|||||++.+.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357799999999999999876
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.03 E-value=0.073 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.4
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++..++++|++|+|||||++.+.+.-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4567789999999999999999998753
No 458
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.01 E-value=0.33 Score=39.63 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=41.8
Q ss_pred CeeEEEEecCCCcccchhhhhHHHHHHHHHHccCccEEEEEEeCCCCchhHHHHHHHhhcccCCCCCEEEEEecCCC
Q 025346 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (254)
Q Consensus 162 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~~~~~~~~~~~~~~~~~~~~piivV~nK~Dl 238 (254)
...+.++|||+.... .....+..+|.+++++..+...-.....+...++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 356899999984321 122335679999999998763322222233334444556788999999943
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.92 E-value=0.074 Score=42.92 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...++..++++|++|+||||+.+.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345566899999999999999998874
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.91 E-value=0.066 Score=40.57 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...|++.|.+|+||||+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 461
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.85 E-value=0.065 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.+..+++.|++|+|||++++.+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345799999999999999999875
No 462
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.83 E-value=0.41 Score=43.12 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+|||++++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999886
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.81 E-value=0.078 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
+..++++|++|+|||++...+...-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999998653
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.74 E-value=0.069 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
.++..++++|++|+|||||+..+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4566799999999999999998885
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.71 E-value=0.069 Score=48.96 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.++..++++|++|+|||||++.+.+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34668999999999999999999975
No 466
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.68 E-value=0.083 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...|+|+|++|+|||+|...+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 467
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.68 E-value=0.075 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.68 E-value=0.057 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6799999999999999999875
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.65 E-value=0.073 Score=41.87 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.....|++.|.+|+||||+.+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999988653
No 470
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.64 E-value=0.035 Score=56.12 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=34.6
Q ss_pred hhhhhccCCcCC--CCCCCchhhhhccccCCCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 82 SFLSLSEKPDRN--MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 82 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++.+.|... ...+.++.. ...++.+++++|++|+|||||++.+.+-
T Consensus 389 ~~~~v~~~y~~~~~~~vL~~isl--------~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 389 EFKNIHFSYPSRKEVQILKGLNL--------KVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEEEECCSSTTSCCSEEEEEE--------EECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEEEEEcCCCCCCcceecceE--------EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455556666432 234555543 4466789999999999999999998864
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.53 E-value=0.063 Score=42.91 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+...+++.|++|+|||+++..+..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999988877663
No 472
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.52 E-value=0.086 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||+++..+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988753
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.51 E-value=0.078 Score=44.28 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..|+++|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.47 E-value=0.079 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
++..++++|+.|+|||||++.+.+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46689999999999999999999853
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.41 E-value=0.082 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.5
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+.++++|++|+|||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346889999999999999998754
No 476
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.36 E-value=0.094 Score=42.08 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.5
Q ss_pred CCCCcEEEEEeCCCCChHHHHHHHhc
Q 025346 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 112 ~~~~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++..+++.|++|+|||||+..++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999887764
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.35 E-value=0.095 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..++++|++|+|||+|...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45688999999999999999874
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.33 E-value=0.092 Score=39.41 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=18.7
Q ss_pred CcEEEEEeCCCCChHHHHHHHh
Q 025346 115 SGYVAVLGKPNVGKSTLANQMI 136 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~ 136 (254)
....+++|+.|+||||++..+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999875
No 479
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.21 E-value=0.09 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred CCCcEEEEEeCCCCChHHHHHHH
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQM 135 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~ 135 (254)
.+..+++++|.+|+||||++..+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 44679999999999999999876
No 480
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.21 E-value=0.08 Score=45.38 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+..+++.|++|+|||++++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 481
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.17 E-value=0.089 Score=48.93 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcCc
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
++..++++|+.|+|||||++.+.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999853
No 482
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.11 E-value=0.079 Score=45.22 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=18.8
Q ss_pred EEEEeCCCCChHHHHHHHhc
Q 025346 118 VAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~ 137 (254)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 483
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.08 E-value=0.12 Score=45.72 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred CCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 114 ~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
.+..|+++|.+|+||||+.+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467889999999999999998753
No 484
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.05 E-value=0.11 Score=40.59 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChHHHHHHHhc
Q 025346 117 YVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 117 ~~~~~G~~~~gKssl~~~~~~ 137 (254)
.|++.|++|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.99 E-value=0.1 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..++++|++|+||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 486
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.92 E-value=0.35 Score=38.15 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=41.6
Q ss_pred CeeEEEEecCCC-cccchhhhhHHHHHHHHHHccCccEEEEEEeCCCC-chhHHHHHHHhhcccCCCCCEEEEEecCCCC
Q 025346 162 EYQMILYDTPGI-IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (254)
Q Consensus 162 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~d~iv~vid~~~~-~~~~~~~~~~~~~~~~~~~piivV~nK~Dl~ 239 (254)
...+.++|||+. .... ....+..+|.+++++..+.. .......+..+.. .. +.++.+|+|++|..
T Consensus 67 ~yD~viiD~p~~~~~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~-~~-~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQK-LG-NNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHH-TC-SSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHh-cc-CCCEEEEEEecCCc
Confidence 467999999984 3221 12335679999999988652 2333333333222 11 56789999999976
Q ss_pred C
Q 025346 240 K 240 (254)
Q Consensus 240 ~ 240 (254)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 5
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.91 E-value=0.099 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...+++.|++|+|||+++..+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 488
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.86 E-value=0.065 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 111 ~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...++.+++++|++|+|||||++.+.+-
T Consensus 1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1055 EVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4466789999999999999999999874
No 489
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.82 E-value=0.088 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhcC
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
+.+++.|++|+|||++++.+...
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988753
No 490
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.79 E-value=0.09 Score=44.47 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcC
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++.|++|+|||+++..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999988753
No 491
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.78 E-value=0.078 Score=39.30 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++.|++|+|||+++..+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3599999999999999988764
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.76 E-value=0.071 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.1
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
...|++.|++|+||||+.+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998764
No 493
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.70 E-value=0.089 Score=45.40 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 110 ~~~~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
...+++..+.++|++|+|||||+..+++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556778999999999999999998864
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.62 E-value=0.36 Score=46.39 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCChHHHHHHHhcC
Q 025346 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 113 ~~~~~~~~~G~~~~gKssl~~~~~~~ 138 (254)
..+..++++|++|+|||+|++.+.+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 44567999999999999999998764
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.62 E-value=0.12 Score=40.14 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhcCcc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIGQKL 140 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~~~~ 140 (254)
+.-+++.|++|+||||+.-.+.....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 45699999999999999999886543
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.57 E-value=0.13 Score=41.65 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCChHHHHHHHhc
Q 025346 115 SGYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 115 ~~~~~~~G~~~~gKssl~~~~~~ 137 (254)
+..|++.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 497
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.56 E-value=0.19 Score=41.92 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEeCCCCChHHHHHHHhcC
Q 025346 118 VAVLGKPNVGKSTLANQMIGQ 138 (254)
Q Consensus 118 ~~~~G~~~~gKssl~~~~~~~ 138 (254)
+++.|++|+|||+++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 999999999999999988754
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.12 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCChHHHHHHHhcCc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~~~ 139 (254)
..++++|++|+|||||++.+.+-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999999854
No 499
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.27 E-value=0.12 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..|+|+|++|+|||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998874
No 500
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.26 E-value=0.12 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCChHHHHHHHhc
Q 025346 116 GYVAVLGKPNVGKSTLANQMIG 137 (254)
Q Consensus 116 ~~~~~~G~~~~gKssl~~~~~~ 137 (254)
..+++.|++|+|||+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
Done!