BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025347
         (254 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 34/236 (14%)

Query: 27  DYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSC 84
           +Y G W +  AT+Y               G  N+    Y   TA  +  +F +G  CGSC
Sbjct: 14  NYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSC 73

Query: 85  YEMKCENDPKWCL--PGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ 142
           YE++C+  P+ C   P ++ +T  N+ P  +A              HFD++  AF  +A+
Sbjct: 74  YEVRCKEKPE-CSGNPVTVYITDMNYEP--IA------------PYHFDLSGKAFGSLAK 118

Query: 143 -------YRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN----LVLITNVGGAGDVHSVS 191
                     GI+ + FRR+ C    G +   +     N     VL+  V   GD+  + 
Sbjct: 119 PGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLME 178

Query: 192 IKGSKTG-WQAMSRNWGQNWQSNS--YLNGQSLSFQLTASDGRTVTSNNVVPGNWQ 244
           I+   +  W+ M  +WG  W+ ++   L G   S +LT+  G+ V + +V+P NW+
Sbjct: 179 IQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWR 233


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 30/239 (12%)

Query: 28  YGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCY 85
           YG  W    +T+Y                Y ++    +   T   +T +F +G  CGSC+
Sbjct: 15  YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCF 74

Query: 86  EMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ--- 142
           E+KC   P+ C    ++V           +++DN     P   HFD++  AF  +A+   
Sbjct: 75  EIKC-TKPEACSGEPVVV----------HITDDNEEPIAP--YHFDLSGHAFGAMAKKGD 121

Query: 143 ----YRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN----LVLITNVGGAGDVHSVSIKG 194
                 AG + + FRR+ C    G + T +     N     +L+  V G GDV +V IK 
Sbjct: 122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKE 181

Query: 195 S-KTGWQAMSRNWGQNWQSNS--YLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFE 250
             K  W  +  +WG  W+ ++   L G   + + T   G    + +V+P  W+   ++E
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYE 239


>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
          Length = 751

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 159 KKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSI--KGSKTGW 199
           ++ G+R+ V  H   +LV++TN GGA + H + I  +G  + W
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVN-HKLLIAPRGQPSDW 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,851,905
Number of Sequences: 62578
Number of extensions: 314688
Number of successful extensions: 594
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)