Query 025347
Match_columns 254
No_of_seqs 153 out of 1064
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 3.9E-70 8.4E-75 482.9 27.4 240 15-254 8-247 (247)
2 PLN00193 expansin-A; Provision 100.0 2E-69 4.3E-74 480.2 29.2 227 28-254 26-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 5.4E-63 1.2E-67 437.0 25.2 209 29-254 22-246 (247)
4 PLN03024 Putative EG45-like do 100.0 5E-29 1.1E-33 200.4 13.1 116 12-154 6-125 (125)
5 COG4305 Endoglucanase C-termin 100.0 2.5E-27 5.3E-32 197.4 21.1 194 18-242 16-216 (232)
6 smart00837 DPBB_1 Rare lipopro 99.9 4.2E-26 9.2E-31 172.9 8.1 86 67-152 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.4E-23 3E-28 167.0 11.1 87 162-254 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 5.3E-22 1.1E-26 149.0 9.6 77 163-240 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 6.3E-19 1.4E-23 130.6 6.5 73 67-152 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 1.6E-10 3.4E-15 90.7 3.4 60 77-157 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.0 2.6E-05 5.7E-10 62.4 8.1 65 67-156 45-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00014 3E-09 63.3 10.0 96 35-160 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.3 0.00093 2E-08 59.1 7.2 61 80-158 118-178 (233)
14 PRK10672 rare lipoprotein A; P 97.1 0.0053 1.1E-07 57.7 11.2 61 79-157 113-173 (361)
15 PF02015 Glyco_hydro_45: Glyco 86.5 0.67 1.4E-05 40.4 3.1 54 67-135 70-123 (201)
16 cd02854 Glycogen_branching_enz 78.5 4.2 9.2E-05 31.2 4.5 48 187-234 16-76 (99)
17 PF03404 Mo-co_dimer: Mo-co ox 65.9 13 0.00028 30.1 4.8 46 186-231 42-105 (131)
18 cd02110 SO_family_Moco_dimer S 57.4 23 0.0005 32.8 5.5 49 184-232 235-293 (317)
19 PF10417 1-cysPrx_C: C-termina 49.4 9.1 0.0002 24.6 1.0 11 237-247 10-20 (40)
20 TIGR02588 conserved hypothetic 46.1 1.6E+02 0.0034 23.8 8.1 35 160-195 33-73 (122)
21 PF04202 Mfp-3: Foot protein 3 45.1 19 0.00041 26.0 2.1 20 8-27 4-23 (71)
22 PRK10564 maltose regulon perip 39.5 67 0.0015 29.9 5.4 76 150-254 48-127 (303)
23 cd02855 Glycogen_branching_enz 38.7 1E+02 0.0023 22.7 5.7 34 200-233 49-85 (106)
24 PF04202 Mfp-3: Foot protein 3 38.2 29 0.00063 25.0 2.2 27 1-27 1-27 (71)
25 PF07172 GRP: Glycine rich pro 37.1 29 0.00064 26.6 2.3 15 7-21 6-20 (95)
26 PF07803 GSG-1: GSG1-like prot 36.3 32 0.0007 27.5 2.5 29 6-37 8-36 (118)
27 PF08770 SoxZ: Sulphur oxidati 34.1 69 0.0015 24.6 4.0 45 185-236 53-97 (100)
28 PLN00177 sulfite oxidase; Prov 33.5 1.1E+02 0.0024 29.4 6.1 27 178-204 289-316 (393)
29 PF12071 DUF3551: Protein of u 33.4 92 0.002 23.2 4.4 9 50-58 42-50 (82)
30 cd02113 bact_SoxC_Moco bacteri 32.2 75 0.0016 29.7 4.6 49 183-231 236-293 (326)
31 PRK10301 hypothetical protein; 30.1 63 0.0014 25.8 3.3 27 142-168 95-124 (124)
32 PF03100 CcmE: CcmE; InterPro 29.6 68 0.0015 25.7 3.4 30 219-248 71-101 (131)
33 cd02860 Pullulanase_N_term Pul 29.2 1.9E+02 0.0041 21.5 5.7 51 200-250 39-95 (100)
34 PF12273 RCR: Chitin synthesis 28.5 50 0.0011 26.3 2.5 17 6-22 6-22 (130)
35 cd02861 E_set_proteins_like E 28.2 1.2E+02 0.0026 21.8 4.3 44 188-233 14-60 (82)
36 PF07265 TAP35_44: Tapetum spe 28.0 59 0.0013 25.5 2.6 20 1-20 1-20 (119)
37 cd02114 bact_SorA_Moco sulfite 27.5 1E+02 0.0022 29.3 4.7 48 184-231 287-344 (367)
38 PF11770 GAPT: GRB2-binding ad 26.6 54 0.0012 27.4 2.3 19 6-25 12-30 (158)
39 PRK13701 psiB plasmid SOS inhi 25.5 2.2E+02 0.0047 23.5 5.6 44 146-193 58-105 (144)
40 PRK13159 cytochrome c-type bio 25.2 87 0.0019 26.3 3.3 28 220-247 73-101 (155)
41 COG2372 CopC Uncharacterized p 25.1 81 0.0018 25.6 3.0 27 142-168 96-125 (127)
42 cd02859 AMPKbeta_GBD_like AMP- 25.0 2.7E+02 0.0058 20.0 5.6 56 176-236 4-62 (79)
43 PRK13254 cytochrome c-type bio 24.0 1E+02 0.0023 25.5 3.6 28 220-247 72-100 (148)
44 cd02111 eukary_SO_Moco molybdo 23.5 2.1E+02 0.0046 27.1 6.1 55 178-232 269-339 (365)
45 PRK13150 cytochrome c-type bio 20.9 1.1E+02 0.0024 25.8 3.2 28 220-247 79-107 (159)
46 PF15240 Pro-rich: Proline-ric 20.6 45 0.00098 28.6 0.8 15 13-27 2-16 (179)
47 PF02922 CBM_48: Carbohydrate- 20.2 1.9E+02 0.0042 20.4 4.1 48 187-234 22-79 (85)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=3.9e-70 Score=482.89 Aligned_cols=240 Identities=75% Similarity=1.374 Sum_probs=223.3
Q ss_pred HHHHHhhhcccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCC
Q 025347 15 FVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPK 94 (254)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~ 94 (254)
++.|++++-....+..+|..++|||||++++.++++|||||+++..++++.++||+|+++|++|..||+||||+|.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~ 87 (247)
T PLN00050 8 IVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNI 87 (247)
T ss_pred HHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCc
Confidence 34445555555666778999999999999988999999999998888899999999999999999999999999977666
Q ss_pred CcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecccCCceEEEEcCccceE
Q 025347 95 WCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 174 (254)
Q Consensus 95 ~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~~~gni~~~v~~~~~w~ 174 (254)
+|.+++|+|+|||+||+++..|+++++||++++.|||||..||.+||....|+|+|+||||+|+++|+|+|++++++||+
T Consensus 88 ~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~ 167 (247)
T PLN00050 88 WCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFN 167 (247)
T ss_pred ccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeE
Confidence 89988999999999999888888899999988999999999999999999999999999999999999999999989999
Q ss_pred EEEEEeecCCcceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEcCccCCCCcCCeEEeCCCC
Q 025347 175 LVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGGQF 254 (254)
Q Consensus 175 av~v~n~~G~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~~vip~~w~~g~~Y~s~~~ 254 (254)
+|+|.|++|+++|++|+||+++++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|++|+++||
T Consensus 168 ~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 168 LVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 99999999999999999999877899999999999999888887799999999999999999999999999999999998
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2e-69 Score=480.17 Aligned_cols=227 Identities=70% Similarity=1.336 Sum_probs=214.6
Q ss_pred CCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcC--CCCCcCCC-cEEEE
Q 025347 28 YGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVT 104 (254)
Q Consensus 28 ~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~--~p~~C~~~-sv~v~ 104 (254)
..++|.+++|||||++++.++++|||||+++..++++.++||+|+++|++|..||+||||+|.. .+.+|.++ +|+|+
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 4558999999999999988899999999998878899999999999999999999999999952 35689776 99999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecccCCceEEEEcCccceEEEEEEeecCC
Q 025347 105 ATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGA 184 (254)
Q Consensus 105 V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~~~gni~~~v~~~~~w~av~v~n~~G~ 184 (254)
|||+||.++..|.+|++||++++.|||||..||.+||....|+++|+||||+|+++|+|+|++++++||++|+|.|++|+
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~ 185 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGA 185 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCC
Confidence 99999998888889999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEcCccCCCCcCCeEEeCC-CC
Q 025347 185 GDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNWQFGQTFEGG-QF 254 (254)
Q Consensus 185 ~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~~vip~~w~~g~~Y~s~-~~ 254 (254)
++|++||||+++++|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|+++ ||
T Consensus 186 gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 186 GSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred ccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 99999999998778999999999999999888877999999999999999999999999999999998 88
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=5.4e-63 Score=437.01 Aligned_cols=209 Identities=29% Similarity=0.653 Sum_probs=189.3
Q ss_pred CCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCCCcCCCcEEEEEecC
Q 025347 29 GGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNF 108 (254)
Q Consensus 29 ~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~ 108 (254)
.++|.+++|||||++++.|+++|||||+++..+.++.++||++ ++|++|.+||+||||+|.+ +.+|.+++|+|+|||.
T Consensus 22 ~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~~v~V~iTd~ 99 (247)
T PLN03023 22 SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDDGVNVVVTDY 99 (247)
T ss_pred cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCCCeEEEEEeC
Confidence 3459999999999999999999999999988778889999998 9999999999999999976 6689988999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcc-------cCCccceeEEEeecccCC-ceEEEEcC--c-cceEEEE
Q 025347 109 CPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-------RAGIVPISFRRIPCAKKG-GIRFTVNG--H-SYFNLVL 177 (254)
Q Consensus 109 Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~-------~~G~v~i~w~~V~C~~~g-ni~~~v~~--~-~~w~av~ 177 (254)
||. + +.|||||..||.+||.+ ..|+|+|+||||+|.++| +|+|+|++ + ++|++|+
T Consensus 100 ~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 100 GEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred CCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 985 3 68999999999999984 569999999999999999 99999983 3 7899999
Q ss_pred EEeecCCcceEEEEEEccC-CceeEccCCCCceEEeCCCCCCcceEEEE--EEcCCcE-EEEcCccCCCCcCCeEEeCC-
Q 025347 178 ITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQL--TASDGRT-VTSNNVVPGNWQFGQTFEGG- 252 (254)
Q Consensus 178 v~n~~G~~~I~sVeI~~~g-~~W~~m~r~~g~~W~~~~~l~g~pl~vRi--Ts~~G~~-v~~~~vip~~w~~g~~Y~s~- 252 (254)
|.|++|+++|++||||+++ .+|++|+|+||++|+++.+|+| ||+||+ |..+|++ |+++||||++|++|+||+++
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~v 244 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNI 244 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccc
Confidence 9999999999999999975 7899999999999999999998 555555 4557755 89999999999999999999
Q ss_pred CC
Q 025347 253 QF 254 (254)
Q Consensus 253 ~~ 254 (254)
||
T Consensus 245 q~ 246 (247)
T PLN03023 245 QL 246 (247)
T ss_pred cc
Confidence 87
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=5e-29 Score=200.39 Aligned_cols=116 Identities=33% Similarity=0.593 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhcccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcC
Q 025347 12 LLLFVLNFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN 91 (254)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~ 91 (254)
|+++.++.++++++++ .+|+||||++++ .||| |++ .+++.++||+++.+|++|..||+||||+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~-----~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~ 71 (125)
T PLN03024 6 LIFSTVLVFLFSVSYA-----TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKG 71 (125)
T ss_pred HHHHHHHHHHhhhhcc-----cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECC
Confidence 6677778888888888 789999999754 5899 444 2467899999999999999999999999965
Q ss_pred C----CCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEE
Q 025347 92 D----PKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRR 154 (254)
Q Consensus 92 ~----p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~ 154 (254)
. +.+|.+++|+|+|+|+||.. |. .|||||++||.+||++..|+++|+|.+
T Consensus 72 ~~~~~~~~c~gksV~V~VtD~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 72 PRNAVPHPCTGKSVTVKIVDHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCccccccccCCeEEEEEEcCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 3 24788889999999999951 73 599999999999999999999999974
No 5
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.5e-27 Score=197.35 Aligned_cols=194 Identities=20% Similarity=0.355 Sum_probs=158.5
Q ss_pred HHhhhcccccCCCCceEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCC----CCCCceEEEEEcCCC
Q 025347 18 NFCFRGTFGDYGGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG----LSCGSCYEMKCENDP 93 (254)
Q Consensus 18 ~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~p 93 (254)
.+|....+...=..-++|.|||-+... ++||-... +.+-+..+.|+|+++-+-| +.-|+.++|.+ |
T Consensus 16 ~~~~s~q~s~awd~~f~G~ATyTgsGY----sGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---P 85 (232)
T COG4305 16 IFCFSPQASAAWDDLFEGYATYTGSGY----SGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---P 85 (232)
T ss_pred hhccCCCcccccccccceeEEEecccc----cCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---C
Confidence 344444333333455789999877543 47887643 3345567999999988754 57899999998 5
Q ss_pred CCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecccCCceEEEEc--Ccc
Q 025347 94 KWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVN--GHS 171 (254)
Q Consensus 94 ~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~~~gni~~~v~--~~~ 171 (254)
+++++|.|+|+.|++ ..+.||||+.||.+|.++.+|+|+|+||.|+-++.||+.+++| ++.
T Consensus 86 ----KG~TTVYVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~ 148 (232)
T COG4305 86 ----KGKTTVYVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSR 148 (232)
T ss_pred ----CCceEEEEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCcc
Confidence 478899999999983 3689999999999999999999999999999999999999999 478
Q ss_pred ceEEEEEEeecCCcceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEc-CccCCC
Q 025347 172 YFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSN-NVVPGN 242 (254)
Q Consensus 172 ~w~av~v~n~~G~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~-~vip~~ 242 (254)
||.++|++|+. .||.++|+.+. +.|..|.+.+||+|.-.+ |...||.+|+|++.|++++.. -.+|+.
T Consensus 149 WWAAIQVRnH~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~ 216 (232)
T COG4305 149 WWAAIQVRNHK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKS 216 (232)
T ss_pred ceeeeeeeccc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccc
Confidence 99999999995 89999999887 789999999999998766 443499999999999998764 355543
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=4.2e-26 Score=172.89 Aligned_cols=86 Identities=76% Similarity=1.453 Sum_probs=79.6
Q ss_pred EEEechhhhCCCCCCCceEEEEEcCCCCCcCCC-cEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccC
Q 025347 67 TAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRA 145 (254)
Q Consensus 67 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~-sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~ 145 (254)
+||+|+++|++|+.||+||||+|.+.|.+|.++ +|+|+|||+||..+..++.+++||.+++.|||||..||.+||....
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997667789875 9999999999998888888899999889999999999999999999
Q ss_pred CccceeE
Q 025347 146 GIVPISF 152 (254)
Q Consensus 146 G~v~i~w 152 (254)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=1.4e-23 Score=166.96 Aligned_cols=87 Identities=22% Similarity=0.415 Sum_probs=78.8
Q ss_pred ceEEEEc--CccceEEEEEEeecCCcceEEEEEEccC-Ccee-EccCCCCceEEeCC--CCCCcceEEEEEEcCCcEEEE
Q 025347 162 GIRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQ-AMSRNWGQNWQSNS--YLNGQSLSFQLTASDGRTVTS 235 (254)
Q Consensus 162 ni~~~v~--~~~~w~av~v~n~~G~~~I~sVeI~~~g-~~W~-~m~r~~g~~W~~~~--~l~g~pl~vRiTs~~G~~v~~ 235 (254)
+|+|+|+ +|++|+++.+ | ++|.+||||+++ .+|+ +|+|+||++|++++ ||+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999999 4699997765 3 369999999986 6899 99999999999764 7888 9999999999999999
Q ss_pred cCccCCCCcCCeEEeCC-CC
Q 025347 236 NNVVPGNWQFGQTFEGG-QF 254 (254)
Q Consensus 236 ~~vip~~w~~g~~Y~s~-~~ 254 (254)
+||||++|+||++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999 87
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=5.3e-22 Score=148.97 Aligned_cols=77 Identities=45% Similarity=0.908 Sum_probs=64.2
Q ss_pred eEEEEc--CccceEEEEEEeecCCcceEEEEEEccC-CceeEccCCCCceEEeC-CCCCCcceEEEEEEcC-CcEEEEcC
Q 025347 163 IRFTVN--GHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSN-SYLNGQSLSFQLTASD-GRTVTSNN 237 (254)
Q Consensus 163 i~~~v~--~~~~w~av~v~n~~G~~~I~sVeI~~~g-~~W~~m~r~~g~~W~~~-~~l~g~pl~vRiTs~~-G~~v~~~~ 237 (254)
|+|+|+ +++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ +++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689999 3699999999999999999999999887 67999999999999998 66665 9999999976 99999999
Q ss_pred ccC
Q 025347 238 VVP 240 (254)
Q Consensus 238 vip 240 (254)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=6.3e-19 Score=130.63 Aligned_cols=73 Identities=36% Similarity=0.767 Sum_probs=61.1
Q ss_pred EEEechhhhCCCCCCCceEEEEEcCC-CCC--cCC--CcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhh
Q 025347 67 TAALSTALFNNGLSCGSCYEMKCEND-PKW--CLP--GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIA 141 (254)
Q Consensus 67 ~aA~s~~~~~~g~~CG~C~~V~c~~~-p~~--C~~--~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la 141 (254)
+||++..+|++|.+||+||+++|... ... |.. ++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999431 222 776 8999999999998 74 699999999999999
Q ss_pred cccCCccceeE
Q 025347 142 QYRAGIVPISF 152 (254)
Q Consensus 142 ~~~~G~v~i~w 152 (254)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.03 E-value=1.6e-10 Score=90.68 Aligned_cols=60 Identities=22% Similarity=0.496 Sum_probs=44.2
Q ss_pred CCCCCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhc----ccCCccceeE
Q 025347 77 NGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ----YRAGIVPISF 152 (254)
Q Consensus 77 ~g~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~----~~~G~v~i~w 152 (254)
+...||+|++||...+ +.+++|+|+|+|+. ++|||.+.+|++|-. ...|.+.|+|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 3468999999998653 45999999999986 589999999999963 3578999999
Q ss_pred EEeec
Q 025347 153 RRIPC 157 (254)
Q Consensus 153 ~~V~C 157 (254)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.03 E-value=2.6e-05 Score=62.36 Aligned_cols=65 Identities=20% Similarity=0.409 Sum_probs=46.3
Q ss_pred EEEech-hhhCCCCCCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhc---
Q 025347 67 TAALST-ALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ--- 142 (254)
Q Consensus 67 ~aA~s~-~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~--- 142 (254)
+.+.+. +-|+ ...||.|+|++.. +++|.|..+|.-+ ..|+|+.+||++|..
T Consensus 45 IGg~~~V~gWn-S~~CGtC~~lty~-------g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~a 99 (119)
T PF07249_consen 45 IGGAPAVAGWN-SPNCGTCWKLTYN-------GRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQA 99 (119)
T ss_dssp EEEETT--STT--TTTT-EEEEEET-------TEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-C
T ss_pred eccccccccCC-CCCCCCeEEEEEC-------CeEEEEEEEecCC-----------------CcccchHHHHHHhcCCcc
Confidence 555554 4464 5789999999994 3599999999743 359999999999986
Q ss_pred ccCCccceeEEEee
Q 025347 143 YRAGIVPISFRRIP 156 (254)
Q Consensus 143 ~~~G~v~i~w~~V~ 156 (254)
...|+|++++++|+
T Consensus 100 ~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 100 VELGRVDATYTQVD 113 (119)
T ss_dssp CCC-EEE-EEEEE-
T ss_pred cceeEEEEEEEEcC
Confidence 36799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.85 E-value=0.00014 Score=63.25 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=69.2
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhhhCCCCCCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCC
Q 025347 35 GHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLA 114 (254)
Q Consensus 35 g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~ 114 (254)
|.|+|||..-. ....|+|-.- + ...++||-. ....|..++|+...+ +.+|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~--G~~TAnGe~y-~---~~~~tAAHk------tLPlgT~V~VtNl~n-----grsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFH--GRKTANGEVY-N---MKALTAAHK------TLPFNTYVKVTNLHN-----NRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCC--CCcCCCCeec-C---CCccccccc------cCCCCCEEEEEECCC-----CCEEEEEEeCCCCCC--
Confidence 67999996321 0123443211 1 123455533 337899999999764 459999999999972
Q ss_pred CCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecccC
Q 025347 115 LSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKK 160 (254)
Q Consensus 115 ~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~~~ 160 (254)
+.--+|||..|+.+|.-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 24689999999999999999999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.00093 Score=59.11 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=52.5
Q ss_pred CCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeecc
Q 025347 80 SCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCA 158 (254)
Q Consensus 80 ~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C~ 158 (254)
.=|.-.+|+..++ +.+|+|+|.|++|- . ..-.||||..|+++|+-...|+.+|..+++.+.
T Consensus 118 P~~t~v~VtNl~N-----grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 118 PLPTYVRVTNLDN-----GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCCEEEEEEccC-----CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 3567899999875 46999999999995 2 246899999999999999999999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.13 E-value=0.0053 Score=57.70 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=49.6
Q ss_pred CCCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChHHHHHhhcccCCccceeEEEeec
Q 025347 79 LSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPC 157 (254)
Q Consensus 79 ~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~AF~~la~~~~G~v~i~w~~V~C 157 (254)
..-|...+|+..++ +++|+|+|.|++|-. +.--||||..|+.+|.-...+.++|+.-.|.=
T Consensus 113 LPlps~vrVtNl~n-----grsvvVrVnDRGP~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~~ 173 (361)
T PRK10672 113 LPIPSYVRVTNLAN-----GRMIVVRINDRGPYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVAP 173 (361)
T ss_pred CCCCCEEEEEECCC-----CcEEEEEEeCCCCCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeCC
Confidence 35788999999875 469999999999962 24679999999999988777778887777743
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=86.52 E-value=0.67 Score=40.35 Aligned_cols=54 Identities=30% Similarity=0.344 Sum_probs=31.1
Q ss_pred EEEechhhhCCCCCCCceEEEEEcCCCCCcCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceecChH
Q 025347 67 TAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEP 135 (254)
Q Consensus 67 ~aA~s~~~~~~g~~CG~C~~V~c~~~p~~C~~~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLS~~ 135 (254)
+||.+-.--.....|++|||++=.+.+ -.+++.+|++++.=-. - ..+||||.-.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d------------l-g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD------------L-GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT------------T-TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC------------C-CCCeEEEEeC
Confidence 566552211223679999999998643 2345999999986432 1 3589999753
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=78.50 E-value=4.2 Score=31.19 Aligned_cols=48 Identities=13% Similarity=0.342 Sum_probs=34.7
Q ss_pred eEEEEEEccCCcee----EccCCCCceEEeCCC---------CCCcceEEEEEEcCCcEEE
Q 025347 187 VHSVSIKGSKTGWQ----AMSRNWGQNWQSNSY---------LNGQSLSFQLTASDGRTVT 234 (254)
Q Consensus 187 I~sVeI~~~g~~W~----~m~r~~g~~W~~~~~---------l~g~pl~vRiTs~~G~~v~ 234 (254)
-++|+|.++-..|. +|.|....+|++.-+ ..|..+++||+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45788887646675 598887789976422 2567999999998887753
No 17
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=65.95 E-value=13 Score=30.05 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=26.7
Q ss_pred ceEEEEEEccC-CceeEccCCC--C-----------ceEEeCC---CCCCc-ceEEEEEEcCCc
Q 025347 186 DVHSVSIKGSK-TGWQAMSRNW--G-----------QNWQSNS---YLNGQ-SLSFQLTASDGR 231 (254)
Q Consensus 186 ~I~sVeI~~~g-~~W~~m~r~~--g-----------~~W~~~~---~l~g~-pl~vRiTs~~G~ 231 (254)
+|.+|||..++ .+|++..... . -.|++.= .++|. -+.+|-||.+|.
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 89999999886 6698665432 1 1355431 12342 566677777774
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=57.43 E-value=23 Score=32.81 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=31.5
Q ss_pred CcceEEEEEEccC-CceeEccCCCC-------ceEEeCC-CCCCc-ceEEEEEEcCCcE
Q 025347 184 AGDVHSVSIKGSK-TGWQAMSRNWG-------QNWQSNS-YLNGQ-SLSFQLTASDGRT 232 (254)
Q Consensus 184 ~~~I~sVeI~~~g-~~W~~m~r~~g-------~~W~~~~-~l~g~-pl~vRiTs~~G~~ 232 (254)
...|++|||..++ .+|++..-... -.|+++- +..|. -+.+|.+|.+|++
T Consensus 235 ~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 235 GRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 3579999999987 58987655321 1455542 22332 6777778887743
No 19
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=49.43 E-value=9.1 Score=24.56 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=9.5
Q ss_pred CccCCCCcCCe
Q 025347 237 NVVPGNWQFGQ 247 (254)
Q Consensus 237 ~vip~~w~~g~ 247 (254)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 58999999985
No 20
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=46.13 E-value=1.6e+02 Score=23.79 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.3
Q ss_pred CCceEEEEc------CccceEEEEEEeecCCcceEEEEEEcc
Q 025347 160 KGGIRFTVN------GHSYFNLVLITNVGGAGDVHSVSIKGS 195 (254)
Q Consensus 160 ~gni~~~v~------~~~~w~av~v~n~~G~~~I~sVeI~~~ 195 (254)
+..|.+.++ +.+||.-+.+.|.+| ...++|+|++.
T Consensus 33 pp~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 33 AAVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CCeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 446666665 246999999999987 58999999964
No 21
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=45.11 E-value=19 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhccccc
Q 025347 8 SSVALLLFVLNFCFRGTFGD 27 (254)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (254)
+|+|.||+++|.-+++.-++
T Consensus 4 ~Si~VLlaLvLIg~fAVqSd 23 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQSD 23 (71)
T ss_pred hhHHHHHHHHHHhhheeeec
Confidence 45666666666666555444
No 22
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.46 E-value=67 Score=29.85 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=45.4
Q ss_pred eeEEEeecccCCceEEEEc-CccceEEEEEEeecCCcceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEE-
Q 025347 150 ISFRRIPCAKKGGIRFTVN-GHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA- 227 (254)
Q Consensus 150 i~w~~V~C~~~gni~~~v~-~~~~w~av~v~n~~G~~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs- 227 (254)
+.|..|+ .+....|.+. +++.+ ...+|.++|...+|-.. .| +++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEEE
Confidence 5666665 3456777776 45544 12233344444444322 22 78888888
Q ss_pred cCCcEEEEcCcc--CCCCcCCeEEeCCCC
Q 025347 228 SDGRTVTSNNVV--PGNWQFGQTFEGGQF 254 (254)
Q Consensus 228 ~~G~~v~~~~vi--p~~w~~g~~Y~s~~~ 254 (254)
..++.|-+.+|+ =++|++-++|.+..|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 334477777644 488888888888754
No 23
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=38.72 E-value=1e+02 Score=22.71 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEccCCC-CceEEe--CCCCCCcceEEEEEEcCCcEE
Q 025347 200 QAMSRNW-GQNWQS--NSYLNGQSLSFQLTASDGRTV 233 (254)
Q Consensus 200 ~~m~r~~-g~~W~~--~~~l~g~pl~vRiTs~~G~~v 233 (254)
.+|.|.. ...|.. +....+..+.+|++..+|++.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3787765 667874 322333468999987555443
No 24
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=38.22 E-value=29 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=20.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhhccccc
Q 025347 1 MTNIAASSSVALLLFVLNFCFRGTFGD 27 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (254)
|.|+..+..|||+|+-++.--..+...
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSdag~~ 27 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDAGYY 27 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecCccc
Confidence 789999999999988776655555444
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.15 E-value=29 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.095 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhh
Q 025347 7 SSSVALLLFVLNFCF 21 (254)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (254)
.+.|+|||++|||..
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555554444433
No 26
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=36.32 E-value=32 Score=27.48 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCCCceEEEE
Q 025347 6 ASSSVALLLFVLNFCFRGTFGDYGGGWQSGHA 37 (254)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a 37 (254)
+.++|.|-+++|+|+..+.... -|..|+=
T Consensus 8 a~Ls~~ln~LAL~~S~tA~~sS---yWC~GTq 36 (118)
T PF07803_consen 8 ALLSLILNLLALAFSTTALLSS---YWCEGTQ 36 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---cccccce
Confidence 4566666666666666665544 4776643
No 27
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=34.10 E-value=69 Score=24.63 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=23.7
Q ss_pred cceEEEEEEccCCceeEccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEc
Q 025347 185 GDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSN 236 (254)
Q Consensus 185 ~~I~sVeI~~~g~~W~~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~ 236 (254)
.+|..+++..+ +.++-+-.|.+...-.| +++++.+|++|+.-.+.
T Consensus 53 ~~v~~~~~~~s------iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 53 KPVFRADWGPS------ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEE-TT------B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEeCCc------ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 35555555443 34443334444333344 88888889888776554
No 28
>PLN00177 sulfite oxidase; Provisional
Probab=33.52 E-value=1.1e+02 Score=29.42 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEeecCCcceEEEEEEccC-CceeEccC
Q 025347 178 ITNVGGAGDVHSVSIKGSK-TGWQAMSR 204 (254)
Q Consensus 178 v~n~~G~~~I~sVeI~~~g-~~W~~m~r 204 (254)
+...+|...|++|||..++ .+|+....
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeee
Confidence 4444543479999999987 58986643
No 29
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=33.39 E-value=92 Score=23.22 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=6.3
Q ss_pred ccccCCCcC
Q 025347 50 GGACGYGNL 58 (254)
Q Consensus 50 ~GaCGy~~~ 58 (254)
.|.|.|...
T Consensus 42 ~g~C~y~t~ 50 (82)
T PF12071_consen 42 PGDCSYSTY 50 (82)
T ss_pred CccCCcCCH
Confidence 378988763
No 30
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=32.23 E-value=75 Score=29.75 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=29.3
Q ss_pred CCcceEEEEEEccC-CceeEccCCC--C-c---eEEeC-CCCCC-cceEEEEEEcCCc
Q 025347 183 GAGDVHSVSIKGSK-TGWQAMSRNW--G-Q---NWQSN-SYLNG-QSLSFQLTASDGR 231 (254)
Q Consensus 183 G~~~I~sVeI~~~g-~~W~~m~r~~--g-~---~W~~~-~~l~g-~pl~vRiTs~~G~ 231 (254)
|.+.|++|||..++ .+|+...... + . .|++. .+..+ --+.+|-||..|+
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 34579999999987 5798765431 1 1 23332 12233 2566677777774
No 31
>PRK10301 hypothetical protein; Provisional
Probab=30.11 E-value=63 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=22.4
Q ss_pred cccCCccceeEEEeecc---cCCceEEEEc
Q 025347 142 QYRAGIVPISFRRIPCA---KKGGIRFTVN 168 (254)
Q Consensus 142 ~~~~G~v~i~w~~V~C~---~~gni~~~v~ 168 (254)
.+..|.+.|+||-|+=+ .+|.+.|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 35789999999999987 3678888875
No 32
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=29.62 E-value=68 Score=25.73 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=18.2
Q ss_pred cceEEEEEEcCCc-EEEEcCccCCCCcCCeE
Q 025347 219 QSLSFQLTASDGR-TVTSNNVVPGNWQFGQT 248 (254)
Q Consensus 219 ~pl~vRiTs~~G~-~v~~~~vip~~w~~g~~ 248 (254)
..++|.|||...+ .|++..+.|++++.|+.
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3788999987553 66678999999988763
No 33
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.19 E-value=1.9e+02 Score=21.46 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=29.2
Q ss_pred eEccCCCCceEEeC--CCCCCcceEEEEEEcCCcE-EEEc---CccCCCCcCCeEEe
Q 025347 200 QAMSRNWGQNWQSN--SYLNGQSLSFQLTASDGRT-VTSN---NVVPGNWQFGQTFE 250 (254)
Q Consensus 200 ~~m~r~~g~~W~~~--~~l~g~pl~vRiTs~~G~~-v~~~---~vip~~w~~g~~Y~ 250 (254)
.+|.|..+.+|.+. ..+.|.-+.+||....++. .+.+ ..+-.|-+.+.+++
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~~~~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGETNEVVDPYAKALSANGERSVDLD 95 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEEEEEcCcccEeEeeCCCceEECC
Confidence 47888778889653 3355567889988764433 3332 23344444444443
No 34
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.49 E-value=50 Score=26.29 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHhhh
Q 025347 6 ASSSVALLLFVLNFCFR 22 (254)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (254)
+.+++++||++++++..
T Consensus 6 ~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 35
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.16 E-value=1.2e+02 Score=21.79 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=27.6
Q ss_pred EEEEEEccCCce--eEccCCCCceEEeCCCC-CCcceEEEEEEcCCcEE
Q 025347 188 HSVSIKGSKTGW--QAMSRNWGQNWQSNSYL-NGQSLSFQLTASDGRTV 233 (254)
Q Consensus 188 ~sVeI~~~g~~W--~~m~r~~g~~W~~~~~l-~g~pl~vRiTs~~G~~v 233 (254)
++|+|.++=..| .+|+|.....|++.-++ .| .+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEE-ECCEEe
Confidence 688998764567 46888765678765434 34 3555554 346655
No 36
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=27.99 E-value=59 Score=25.48 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=15.0
Q ss_pred CcchhhHHHHHHHHHHHHHh
Q 025347 1 MTNIAASSSVALLLFVLNFC 20 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (254)
|.+|.-.+++.|||++++|.
T Consensus 1 MS~iSk~sslcLlll~~ff~ 20 (119)
T PF07265_consen 1 MSKISKVSSLCLLLLVVFFL 20 (119)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 67888888888888775543
No 37
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=27.51 E-value=1e+02 Score=29.33 Aligned_cols=48 Identities=19% Similarity=0.479 Sum_probs=29.9
Q ss_pred CcceEEEEEEccC-CceeEccCC--CCc----eEEeC-CC-CCCc-ceEEEEEEcCCc
Q 025347 184 AGDVHSVSIKGSK-TGWQAMSRN--WGQ----NWQSN-SY-LNGQ-SLSFQLTASDGR 231 (254)
Q Consensus 184 ~~~I~sVeI~~~g-~~W~~m~r~--~g~----~W~~~-~~-l~g~-pl~vRiTs~~G~ 231 (254)
...|++|||..++ .+|++..-. .+. .|++. .+ ..|. -+.+|-||..|+
T Consensus 287 ~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 287 GSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 3579999999887 579866432 222 35554 12 2342 566677787774
No 38
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.59 E-value=54 Score=27.42 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHhhhccc
Q 025347 6 ASSSVALLLFVLNFCFRGTF 25 (254)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (254)
.++.+.||+ +|++|++.++
T Consensus 12 i~igi~Ll~-lLl~cgiGcv 30 (158)
T PF11770_consen 12 ISIGISLLL-LLLLCGIGCV 30 (158)
T ss_pred HHHHHHHHH-HHHHHhcceE
Confidence 333333333 4555554443
No 39
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=25.51 E-value=2.2e+02 Score=23.51 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=25.3
Q ss_pred CccceeEEEeecccCCceEEEEc--C--ccceEEEEEEeecCCcceEEEEEE
Q 025347 146 GIVPISFRRIPCAKKGGIRFTVN--G--HSYFNLVLITNVGGAGDVHSVSIK 193 (254)
Q Consensus 146 G~v~i~w~~V~C~~~gni~~~v~--~--~~~w~av~v~n~~G~~~I~sVeI~ 193 (254)
|-++|+-|+-| ..++..+.+= | +|+|+.|++ +.+| -++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 44555555544 2234444443 3 799999887 5665 355555544
No 40
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.19 E-value=87 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=21.3
Q ss_pred ceEEEEEEcCCc-EEEEcCccCCCCcCCe
Q 025347 220 SLSFQLTASDGR-TVTSNNVVPGNWQFGQ 247 (254)
Q Consensus 220 pl~vRiTs~~G~-~v~~~~vip~~w~~g~ 247 (254)
.++|+|||...+ .|.+..++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 478888886554 5666789999998875
No 41
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=25.06 E-value=81 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=23.2
Q ss_pred cccCCccceeEEEeeccc---CCceEEEEc
Q 025347 142 QYRAGIVPISFRRIPCAK---KGGIRFTVN 168 (254)
Q Consensus 142 ~~~~G~v~i~w~~V~C~~---~gni~~~v~ 168 (254)
++..|.+-++||.|+-+- .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 467999999999999983 678999886
No 42
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=24.95 E-value=2.7e+02 Score=20.00 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=34.6
Q ss_pred EEEEeecCCcceEEEEEEccCCcee---EccCCCCceEEeCCCCCCcceEEEEEEcCCcEEEEc
Q 025347 176 VLITNVGGAGDVHSVSIKGSKTGWQ---AMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSN 236 (254)
Q Consensus 176 v~v~n~~G~~~I~sVeI~~~g~~W~---~m~r~~g~~W~~~~~l~g~pl~vRiTs~~G~~v~~~ 236 (254)
+.+...+ +-++|+|.++=.+|. +|.|..+. |+..-.|+...+.+|+.- +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 4444443 357999998645675 58887655 765444432267777763 67877654
No 43
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.01 E-value=1e+02 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCc-EEEEcCccCCCCcCCe
Q 025347 220 SLSFQLTASDGR-TVTSNNVVPGNWQFGQ 247 (254)
Q Consensus 220 pl~vRiTs~~G~-~v~~~~vip~~w~~g~ 247 (254)
.++|+|||...+ .|+++.++|+.++-|+
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~ 100 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQ 100 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCC
Confidence 688888886443 5556789999988775
No 44
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=23.53 E-value=2.1e+02 Score=27.12 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=32.1
Q ss_pred EEeecCCcceEEEEEEccC-CceeEccCCC--C-------ce---EEeCCC-CC-C-cceEEEEEEcCCcE
Q 025347 178 ITNVGGAGDVHSVSIKGSK-TGWQAMSRNW--G-------QN---WQSNSY-LN-G-QSLSFQLTASDGRT 232 (254)
Q Consensus 178 v~n~~G~~~I~sVeI~~~g-~~W~~m~r~~--g-------~~---W~~~~~-l~-g-~pl~vRiTs~~G~~ 232 (254)
+...+|...|++|||..++ .+|+...-.. + -. |++.-+ .+ | --+.+|-||..|++
T Consensus 269 ~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 269 YAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 4444544579999999987 5798765422 1 23 444321 12 2 14666777777743
No 45
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.87 E-value=1.1e+02 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=21.2
Q ss_pred ceEEEEEEcCCc-EEEEcCccCCCCcCCe
Q 025347 220 SLSFQLTASDGR-TVTSNNVVPGNWQFGQ 247 (254)
Q Consensus 220 pl~vRiTs~~G~-~v~~~~vip~~w~~g~ 247 (254)
.++|+|||...+ .|++..++|+.|+.|+
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQ 107 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCC
Confidence 578888886654 5556789999988775
No 46
>PF15240 Pro-rich: Proline-rich
Probab=20.57 E-value=45 Score=28.64 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=6.3
Q ss_pred HHHHHHHhhhccccc
Q 025347 13 LLFVLNFCFRGTFGD 27 (254)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (254)
||++|.+.|++++.+
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 344444444444433
No 47
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=20.16 E-value=1.9e+02 Score=20.37 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=29.8
Q ss_pred eEEEEEEccCCc-e----eEcc-CCCCceEEeCC--CCC-C-cceEEEEEEcCCcEEE
Q 025347 187 VHSVSIKGSKTG-W----QAMS-RNWGQNWQSNS--YLN-G-QSLSFQLTASDGRTVT 234 (254)
Q Consensus 187 I~sVeI~~~g~~-W----~~m~-r~~g~~W~~~~--~l~-g-~pl~vRiTs~~G~~v~ 234 (254)
-++|+|...... | .+|+ +....+|++.- .++ | .-+.+||+...|++..
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 446666554322 3 5788 46778997542 344 3 3899999998875443
Done!