Query 025348
Match_columns 254
No_of_seqs 245 out of 1981
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.5E-56 7.5E-61 379.5 26.0 252 1-254 29-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 3.7E-50 7.9E-55 353.3 27.5 247 2-254 56-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 1.5E-37 3.4E-42 269.7 22.9 218 2-238 44-264 (286)
4 PRK12888 ubiA prenyltransferas 100.0 7E-37 1.5E-41 266.4 24.0 226 2-247 46-281 (284)
5 PLN02809 4-hydroxybenzoate non 100.0 2.5E-36 5.4E-41 263.3 24.1 216 2-238 52-270 (289)
6 PRK12876 ubiA prenyltransferas 100.0 9.5E-36 2E-40 258.8 24.9 235 2-254 54-299 (300)
7 TIGR01475 ubiA_other putative 100.0 1.7E-35 3.7E-40 258.3 23.0 219 2-238 43-264 (282)
8 PRK12870 ubiA 4-hydroxybenzoat 100.0 1E-35 2.2E-40 260.1 20.7 216 2-238 53-272 (290)
9 PRK13106 ubiA prenyltransferas 100.0 2.3E-35 5.1E-40 258.1 22.4 228 2-248 56-296 (300)
10 PRK12874 ubiA prenyltransferas 100.0 7.3E-35 1.6E-39 254.6 24.8 217 2-238 54-272 (291)
11 PRK12873 ubiA prenyltransferas 100.0 6.7E-35 1.5E-39 253.5 22.4 223 2-243 51-282 (294)
12 PRK12886 ubiA prenyltransferas 100.0 3.1E-34 6.8E-39 250.7 24.4 221 2-242 49-273 (291)
13 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.9E-34 4.2E-39 251.5 22.8 216 2-238 49-266 (282)
14 TIGR01474 ubiA_proteo 4-hydrox 100.0 3.2E-34 6.9E-39 250.0 23.4 216 2-238 47-264 (281)
15 COG0382 UbiA 4-hydroxybenzoate 100.0 1.2E-33 2.6E-38 247.5 24.5 221 2-242 54-276 (289)
16 PRK12878 ubiA 4-hydroxybenzoat 100.0 1.5E-33 3.1E-38 248.7 23.2 217 1-238 78-296 (314)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 1.5E-33 3.2E-38 246.4 22.3 216 2-238 52-269 (285)
18 PRK12884 ubiA prenyltransferas 100.0 5.6E-33 1.2E-37 242.2 24.9 225 2-246 44-269 (279)
19 PRK12392 bacteriochlorophyll c 100.0 5E-33 1.1E-37 246.3 23.6 202 7-223 62-270 (331)
20 PRK12882 ubiA prenyltransferas 100.0 6.3E-33 1.4E-37 241.5 23.7 223 2-243 45-269 (276)
21 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.2E-32 2.6E-37 240.1 24.7 216 2-238 44-260 (279)
22 PRK07566 bacteriochlorophyll/c 100.0 2.4E-32 5.2E-37 241.5 24.3 177 2-190 72-249 (314)
23 TIGR01476 chlor_syn_BchG bacte 100.0 3.1E-32 6.8E-37 237.9 24.2 178 2-191 45-222 (283)
24 PRK12869 ubiA protoheme IX far 100.0 1.6E-31 3.5E-36 232.7 25.4 224 2-244 43-271 (279)
25 PRK04375 protoheme IX farnesyl 100.0 1.1E-31 2.3E-36 235.7 24.1 217 2-237 51-272 (296)
26 PRK05951 ubiA prenyltransferas 100.0 1.9E-30 4.2E-35 227.6 27.1 226 1-238 46-278 (296)
27 PRK13595 ubiA prenyltransferas 100.0 5.8E-31 1.3E-35 227.3 22.7 222 2-248 54-277 (292)
28 PLN00012 chlorophyll synthetas 100.0 1.8E-30 4E-35 233.0 26.2 219 2-238 130-356 (375)
29 TIGR01473 cyoE_ctaB protoheme 100.0 8.2E-31 1.8E-35 228.6 23.0 222 2-242 42-270 (280)
30 TIGR02056 ChlG chlorophyll syn 100.0 2.1E-30 4.6E-35 228.3 24.1 176 2-190 61-243 (306)
31 KOG1381 Para-hydroxybenzoate-p 100.0 9.5E-32 2.1E-36 224.2 11.4 220 2-243 110-334 (353)
32 PRK06080 1,4-dihydroxy-2-napht 100.0 9.2E-29 2E-33 217.1 26.8 189 2-201 45-239 (293)
33 PRK12883 ubiA prenyltransferas 100.0 7.1E-29 1.5E-33 216.1 24.4 163 2-182 44-206 (277)
34 PRK13387 1,4-dihydroxy-2-napht 100.0 8.2E-28 1.8E-32 212.5 26.5 188 2-194 46-253 (317)
35 PRK12871 ubiA prenyltransferas 100.0 4.8E-28 1E-32 212.0 24.6 228 3-252 49-295 (297)
36 PRK13362 protoheme IX farnesyl 100.0 1.2E-27 2.5E-32 210.4 24.8 163 2-180 54-220 (306)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 2.9E-27 6.2E-32 205.9 24.8 185 1-195 34-229 (284)
38 PF01040 UbiA: UbiA prenyltran 100.0 8.2E-28 1.8E-32 206.5 19.9 162 2-177 30-193 (257)
39 PRK12872 ubiA prenyltransferas 100.0 4.8E-27 1E-31 205.5 22.3 178 2-194 43-225 (285)
40 PRK13591 ubiA prenyltransferas 100.0 2.1E-26 4.5E-31 199.9 22.5 174 2-193 65-242 (307)
41 PLN02776 prenyltransferase 100.0 6.5E-26 1.4E-30 200.1 25.1 223 2-244 36-265 (341)
42 PRK07419 1,4-dihydroxy-2-napht 99.9 3.1E-25 6.8E-30 194.5 25.5 188 1-201 54-245 (304)
43 PRK13105 ubiA prenyltransferas 99.9 4.1E-25 9E-30 191.5 24.8 181 2-194 37-224 (282)
44 TIGR02235 menA_cyano-plnt 1,4- 99.9 6.3E-25 1.4E-29 191.3 25.7 188 1-201 41-232 (285)
45 PLN02922 prenyltransferase 99.9 2.5E-24 5.5E-29 189.8 27.3 190 1-196 57-254 (315)
46 COG1575 MenA 1,4-dihydroxy-2-n 99.9 7.4E-24 1.6E-28 182.3 25.3 182 1-193 50-239 (303)
47 PRK13592 ubiA prenyltransferas 99.9 3.4E-24 7.5E-29 184.6 21.2 171 3-189 54-232 (299)
48 PRK12875 ubiA prenyltransferas 99.9 5.8E-23 1.3E-27 178.5 22.1 169 9-194 59-229 (282)
49 COG0109 CyoE Polyprenyltransfe 99.9 1.9E-22 4.2E-27 173.2 16.4 162 2-179 59-224 (304)
50 PRK12324 phosphoribose diphosp 99.8 3E-16 6.4E-21 137.1 22.2 97 2-106 53-151 (295)
51 PRK08238 hypothetical protein; 99.7 2.6E-15 5.7E-20 139.5 20.1 143 2-163 233-377 (479)
52 KOG4581 Predicted membrane pro 99.3 3.5E-13 7.5E-18 111.0 1.9 184 3-199 107-298 (359)
53 KOG1380 Heme A farnesyltransfe 99.3 2.1E-11 4.6E-16 105.0 8.6 168 2-186 134-308 (409)
54 COG1575 MenA 1,4-dihydroxy-2-n 92.5 0.41 8.9E-06 42.1 6.5 27 3-29 184-210 (303)
55 PRK13591 ubiA prenyltransferas 90.6 0.98 2.1E-05 40.0 7.0 68 13-83 197-271 (307)
56 PRK13387 1,4-dihydroxy-2-napht 89.3 1.5 3.2E-05 39.1 7.1 41 6-49 200-241 (317)
57 PLN02922 prenyltransferase 89.0 1.9 4E-05 38.5 7.6 41 5-48 198-239 (315)
58 PRK07419 1,4-dihydroxy-2-napht 88.9 1.9 4.2E-05 38.1 7.6 39 6-47 185-224 (304)
59 PRK12872 ubiA prenyltransferas 88.7 2.3 4.9E-05 37.0 7.8 32 5-36 171-203 (285)
60 TIGR02056 ChlG chlorophyll syn 88.4 4.5 9.8E-05 35.8 9.6 43 140-183 64-109 (306)
61 PRK12884 ubiA prenyltransferas 88.0 3.9 8.4E-05 35.5 8.8 33 139-172 46-78 (279)
62 COG0382 UbiA 4-hydroxybenzoate 86.8 12 0.00025 32.8 11.2 33 139-171 56-89 (289)
63 PRK12875 ubiA prenyltransferas 85.5 13 0.00029 32.4 10.8 44 3-49 173-217 (282)
64 PRK12392 bacteriochlorophyll c 84.8 4.4 9.5E-05 36.3 7.6 33 4-36 189-222 (331)
65 PRK12887 ubiA tocopherol phyty 84.6 19 0.00041 31.9 11.4 24 148-172 71-94 (308)
66 TIGR02235 menA_cyano-plnt 1,4- 84.5 4.6 9.9E-05 35.4 7.4 41 6-49 172-213 (285)
67 PRK06080 1,4-dihydroxy-2-napht 84.0 5.8 0.00013 34.7 7.9 42 5-49 178-220 (293)
68 PRK12324 phosphoribose diphosp 83.9 7.1 0.00015 34.4 8.4 22 140-161 56-77 (295)
69 PRK13105 ubiA prenyltransferas 83.9 5.9 0.00013 34.7 7.8 41 6-49 171-212 (282)
70 PF01040 UbiA: UbiA prenyltran 83.7 9.1 0.0002 32.2 8.9 34 141-174 34-68 (257)
71 PLN02809 4-hydroxybenzoate non 83.1 6.7 0.00015 34.4 7.9 33 140-172 55-88 (289)
72 PLN00012 chlorophyll synthetas 82.5 7.1 0.00015 35.6 8.1 31 6-36 263-294 (375)
73 PRK07566 bacteriochlorophyll/c 82.2 8.2 0.00018 34.2 8.2 30 7-36 201-231 (314)
74 TIGR01474 ubiA_proteo 4-hydrox 81.8 8.3 0.00018 33.6 8.0 33 4-36 169-202 (281)
75 PRK09573 (S)-2,3-di-O-geranylg 81.6 11 0.00024 32.7 8.8 43 139-182 46-91 (279)
76 PRK13592 ubiA prenyltransferas 80.4 20 0.00044 31.6 9.8 43 139-182 55-100 (299)
77 TIGR01476 chlor_syn_BchG bacte 80.3 9.3 0.0002 33.2 7.8 30 7-36 173-203 (283)
78 PRK13595 ubiA prenyltransferas 79.7 23 0.0005 31.2 10.0 36 142-178 59-97 (292)
79 TIGR00751 menA 1,4-dihydroxy-2 79.6 8.3 0.00018 33.8 7.2 41 6-49 175-216 (284)
80 TIGR01475 ubiA_other putative 79.4 8.9 0.00019 33.4 7.4 33 4-36 167-200 (282)
81 PRK12847 ubiA 4-hydroxybenzoat 79.0 11 0.00024 32.8 7.9 33 4-36 174-207 (285)
82 PRK12882 ubiA prenyltransferas 77.9 12 0.00027 32.3 7.8 42 140-182 48-92 (276)
83 PRK12870 ubiA 4-hydroxybenzoat 75.8 15 0.00033 32.1 7.8 32 141-172 57-89 (290)
84 PRK12869 ubiA protoheme IX far 75.8 18 0.00038 31.5 8.2 25 139-163 45-69 (279)
85 PRK12871 ubiA prenyltransferas 73.6 17 0.00038 32.0 7.6 34 4-37 184-218 (297)
86 PRK12883 ubiA prenyltransferas 72.2 25 0.00053 30.5 8.2 37 143-180 50-89 (277)
87 PRK13106 ubiA prenyltransferas 71.8 19 0.00042 31.7 7.5 31 5-35 187-218 (300)
88 PRK12873 ubiA prenyltransferas 70.6 21 0.00046 31.5 7.4 34 139-172 53-87 (294)
89 TIGR03750 conj_TIGR03750 conju 70.5 15 0.00032 27.5 5.4 69 22-94 5-77 (111)
90 PRK13362 protoheme IX farnesyl 70.5 27 0.00058 30.9 8.1 42 139-180 56-101 (306)
91 PRK12848 ubiA 4-hydroxybenzoat 68.8 37 0.00079 29.6 8.6 34 5-38 172-206 (282)
92 TIGR01473 cyoE_ctaB protoheme 68.7 35 0.00077 29.6 8.4 43 140-182 45-91 (280)
93 PRK08238 hypothetical protein; 66.9 36 0.00078 32.2 8.6 48 139-186 235-286 (479)
94 PRK04375 protoheme IX farnesyl 66.6 37 0.0008 29.8 8.2 40 140-179 54-97 (296)
95 PRK11383 hypothetical protein; 65.4 64 0.0014 25.2 10.5 81 72-159 49-132 (145)
96 PRK12888 ubiA prenyltransferas 64.6 49 0.0011 28.9 8.5 33 4-36 168-201 (284)
97 PRK12886 ubiA prenyltransferas 63.3 43 0.00092 29.4 7.9 31 141-171 53-84 (291)
98 PRK12895 ubiA prenyltransferas 62.5 67 0.0014 28.2 8.9 42 141-182 48-93 (286)
99 PLN02776 prenyltransferase 59.9 69 0.0015 28.9 8.7 41 139-179 38-82 (341)
100 PRK12876 ubiA prenyltransferas 59.4 52 0.0011 29.1 7.7 31 142-172 59-90 (300)
101 PF04284 DUF441: Protein of un 58.7 66 0.0014 25.1 7.2 16 30-45 59-74 (140)
102 PRK05951 ubiA prenyltransferas 58.6 81 0.0018 27.6 8.9 23 140-162 50-72 (296)
103 PRK12878 ubiA 4-hydroxybenzoat 56.6 72 0.0016 28.3 8.2 33 4-36 201-234 (314)
104 PRK12874 ubiA prenyltransferas 55.8 85 0.0018 27.5 8.5 21 143-163 60-80 (291)
105 PLN02878 homogentisate phytylt 51.6 83 0.0018 27.6 7.6 26 147-173 40-65 (280)
106 COG4147 DhlC Predicted symport 40.2 2.1E+02 0.0046 27.2 8.7 23 3-25 361-383 (529)
107 PF11990 DUF3487: Protein of u 37.4 1.7E+02 0.0037 22.2 6.5 42 22-65 8-51 (121)
108 TIGR02762 TraL_TIGR type IV co 36.2 1.6E+02 0.0035 21.1 6.7 18 23-43 7-24 (95)
109 cd00867 Trans_IPPS Trans-Isopr 32.4 24 0.00052 29.4 1.3 34 142-175 158-201 (236)
110 PF04971 Lysis_S: Lysis protei 29.8 40 0.00086 22.8 1.7 26 2-27 39-64 (68)
111 PRK04214 rbn ribonuclease BN/u 29.3 3.8E+02 0.0083 24.6 8.7 16 7-22 117-132 (412)
112 COG0142 IspA Geranylgeranyl py 28.9 1.5E+02 0.0032 26.4 5.7 46 144-190 80-125 (322)
113 PF10777 YlaC: Inner membrane 28.2 94 0.002 24.5 3.7 25 146-170 115-139 (155)
114 PRK13707 conjugal transfer pil 28.0 2.4E+02 0.0052 20.6 6.3 56 35-105 22-77 (101)
115 KOG3146 Dolichyl pyrophosphate 26.8 3.9E+02 0.0084 22.5 12.8 104 5-115 57-174 (228)
116 COG4125 Predicted membrane pro 26.5 1.3E+02 0.0028 23.4 4.1 23 6-28 48-70 (149)
117 PRK10581 geranyltranstransfera 24.9 38 0.00082 29.9 1.2 39 142-180 215-264 (299)
118 COG1295 Rbn Ribonuclease BN fa 21.0 5.7E+02 0.012 22.4 9.3 13 75-88 202-214 (303)
119 TIGR02711 symport_actP cation/ 21.0 3.6E+02 0.0077 25.9 7.1 17 4-20 373-389 (549)
120 PF01219 DAGK_prokar: Prokaryo 20.7 1.4E+02 0.003 21.9 3.3 32 2-33 46-77 (104)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.5e-56 Score=379.45 Aligned_cols=252 Identities=52% Similarity=0.947 Sum_probs=228.4
Q ss_pred ChHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhH
Q 025348 1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAA 80 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
++++++++.....+||++|+|+||+|||+||+|||++|+++++.....+ .++|+.+++.+|++++..+...++++++.
T Consensus 29 ~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~--~~lg~~la~~~g~~~l~~al~~~~~lg~~ 106 (280)
T PLN02878 29 LVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSF--AIMSFGMGWIVGSWPLFWALFVSFVLGTA 106 (280)
T ss_pred HHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999888 88999999999987777766677789999
Q ss_pred hcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHH
Q 025348 81 YSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKE 160 (254)
Q Consensus 81 Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~ 160 (254)
||...||+|+||+++....+..+.++..+.+|++.+.++..+|.+...+.+.++..+++.+...+++++||++|+||||+
T Consensus 107 YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~ 186 (280)
T PLN02878 107 YSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRI 186 (280)
T ss_pred HHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHH
Confidence 99777999999999999888877788888899999888888886555555666555567778889999999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Q 025348 161 FGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFIF 240 (254)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~~ 240 (254)
.|+||+|+++|+|++++++..++.++|+..+..|..++..+...+...+|.+++..+++|.+++|++++++..+|||+||
T Consensus 187 ~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiw 266 (280)
T PLN02878 187 FGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIW 266 (280)
T ss_pred CCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888877777778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC
Q 025348 241 KLYYAEFFLIHFIR 254 (254)
Q Consensus 241 ~~~~~~~~~~~~~~ 254 (254)
|+||+||+++|+.|
T Consensus 267 klfy~ey~l~p~~~ 280 (280)
T PLN02878 267 KLFYAEYFLIPLVR 280 (280)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=3.7e-50 Score=353.31 Aligned_cols=247 Identities=33% Similarity=0.603 Sum_probs=208.8
Q ss_pred hHHHHHHHHHHH----hhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 025348 2 VPAILMNIFVTA----INQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIV 77 (254)
Q Consensus 2 ~~~~l~~~a~~~----~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~ 77 (254)
+++++++.++|. +||++|+|+|++|||+||++||++|++|++....++ .++++.+++..|+..+.. .+++.++
T Consensus 56 l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~--~~lal~la~~~~~~~~~~-~~~~~~l 132 (308)
T PRK12887 56 LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIIT--GILALILAALLGPWLLIT-VGISLLI 132 (308)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 345666777777 999999999999999999999999999999988888 888888888888665544 4678889
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
++.|| .||+|+||+|.+++++.+..++.++..|.+.+.+. ..+...+.+.+.++..++.++|+.++++.||++|+|+
T Consensus 133 g~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg 209 (308)
T PRK12887 133 GTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQW-LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG 209 (308)
T ss_pred HHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999 58999999999999888878877666776654322 2222223455555666778899999999999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYM 237 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 237 (254)
|++.|+||+|+++|+|++.+++..++.++|+..+..+......+...++.++|.+.+.+++||.+++|.+||++..+|||
T Consensus 210 D~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 289 (308)
T PRK12887 210 DRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQ 289 (308)
T ss_pred HHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 99999999999999999999999999999988877766655555545556999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcC
Q 025348 238 FIFKLYYAEFFLIHFIR 254 (254)
Q Consensus 238 ~~~~~~~~~~~~~~~~~ 254 (254)
+|||+||+||+++|++|
T Consensus 290 ~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 290 FIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999976
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=269.73 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||+.|+|+|++|+| +||+|+|++|++||+.+...+ .++++.++..+|+.++.++ .....+..
T Consensus 44 ~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~--~~~~~~~~~~ln~l~~~l~-~~~~~l~~ 120 (286)
T PRK12895 44 IAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF--IAIFEICTFLLNRLVFILS-PIVIFLFI 120 (286)
T ss_pred HHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 577899999999999999999999966 799999999999999999998 8888888888898877654 34555555
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.|+ .+||++.++++..+...+..+.+|+.+ +.|. .......+++++...+|+.++|++|++||+|+|+
T Consensus 121 ~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v~g~-~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~ 188 (286)
T PRK12895 121 IDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----VIPA-FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDK 188 (286)
T ss_pred HHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----HcCC-CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 666 489999999865444444434444432 2232 1111223345566789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSM-QSLYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f~~~ 238 (254)
|.|+||+|+++|+|++.++...++.++.......|.... ++ +|+++..+.+.++.||++.+|++|+++| .+||..
T Consensus 189 ~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~ 264 (286)
T PRK12895 189 INGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNA 264 (286)
T ss_pred HcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999887777777777766666665543 33 5678888889999999999999999999 666643
No 4
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7e-37 Score=266.43 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+++|+++|++||++|+|+|++|+| +||+|+|++|++|++.+...+ ..+++.++..+|+.++.+. .++.+...
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~--~~~~l~l~~~l~~~~~~l~-~~~~~~~~ 122 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVA--LAVFLGAAALLNPLCLALA-PLAVAPLV 122 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 688999999999999999999999985 799999999999999988877 6667777777787766554 34555677
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.|+. .||++..++...++.++..+..+++. ..| ..+.+.+++.+..++|+.+++++|++||+|+|+
T Consensus 123 ~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~ 188 (284)
T PRK12888 123 VYPY------AKRFTNFPHAILGLAQAVGPVGAWIA-----VTG---TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDR 188 (284)
T ss_pred HHHH------hhcccchhhHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8983 79999988877666665544445433 223 234455566677789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHH-HHH-H
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQ-SLY-M 237 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~-~ 237 (254)
+.|+||+|+++|+|++.++...++.+++......+...+.++ .|+.+..+.+.++.||++.+|.+|++.|. .|| .
T Consensus 189 ~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 265 (284)
T PRK12888 189 RIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTA 265 (284)
T ss_pred HCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 999999999999999988777777777766666666666665 56677888889999999999999977775 766 4
Q ss_pred H------HHHHHHHHH
Q 025348 238 F------IFKLYYAEF 247 (254)
Q Consensus 238 ~------~~~~~~~~~ 247 (254)
+ ++.++.+++
T Consensus 266 n~~ig~~~~~~~~~~~ 281 (284)
T PRK12888 266 NGFVGIALFGFALLDL 281 (284)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4 444444554
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=2.5e-36 Score=263.27 Aligned_cols=216 Identities=18% Similarity=0.176 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||++|+|+|++|+| +||+|+|++|++||..+..++ .++++.+.+.+|+.++.++ .++.+..+
T Consensus 52 ~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~--~~~~~~~~~~l~~~~~~l~-~~~~~~~~ 128 (289)
T PLN02809 52 CGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQ--LLLGLGILLQLNNYSRILG-ASSLLLVF 128 (289)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 678999999999999999999999875 799999999999999998888 8888888887887766665 45667788
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHH-HHHHHHHHHHHHHHHhcCCCChhhh
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLL-FAAAFMGIFNIAIAFVKDLPDVEGD 158 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~e~D 158 (254)
.||. +||++..+++..+..++....+++. +..|. .+.... .++....+|+..+++++++||+|+|
T Consensus 129 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~-----av~g~---~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D 194 (289)
T PLN02809 129 TYPL------MKRFTFWPQAFLGLTFNWGALLGWA-----AVKGS---LDPAVVLPLYASGVCWTLVYDTIYAHQDKEDD 194 (289)
T ss_pred HHhH------HHhcCcchHHHHHHHHHHHHHHHHH-----HHhCC---CChHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 9983 7999999887766655544444542 23332 222222 2455667899999999999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
+|.|+||+|+++|+|+..++. .+...++......|...+.++ ++++++.+.+.++.+|++.+|++|+++|.++|+.
T Consensus 195 ~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~ 270 (289)
T PLN02809 195 LKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS 270 (289)
T ss_pred HhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999666655 456666666666676665555 5566888888999999999999999999887764
No 6
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.5e-36 Score=258.79 Aligned_cols=235 Identities=16% Similarity=0.196 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+.+|+++|++||+.|+|+|++|+| +||+|+|++|++||+.+...+ .++++.++..+|+.+..++ .++.++.+
T Consensus 54 ~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~--~~~~~~l~~~ln~l~~~l~-~~~~~~~~ 130 (300)
T PRK12876 54 SAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLC--SFLFLSLCWLLNPLCFSLA-VLSTLLMI 130 (300)
T ss_pred HHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 688999999999999999999999996 799999999999999998876 6667777788898877775 45666778
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchH----HHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTK----PLLFAAAFMGIFNIAIAFVKDLPDV 155 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~ 155 (254)
.||. +||++..+++..+...+.....++.+ +.++. .+. ..+++.....+|+.++|++|++||+
T Consensus 131 iY~~------~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~--~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~ 197 (300)
T PRK12876 131 IYPY------TKRVTFLCHWILGLVYYLAILMNFFA-----IIETP--LSFSLFCMASLWGISFGMIIAANDIIYAIQDL 197 (300)
T ss_pred HHHh------HhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 9983 89999999876655555433444432 23321 122 2233445566788899999999999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH--HHHhhhhccccchHHHH
Q 025348 156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFI--LWHQTRTIDLSDAKSMQ 233 (254)
Q Consensus 156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~d~~~~~~~~ 233 (254)
|+|+|.|+||+|+++|++++.++...++.++...+.+.|...+.++ ..|..+..+.+.. +.+|.+.+|.++++.|.
T Consensus 198 e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (300)
T PRK12876 198 EFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQ 275 (300)
T ss_pred hhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 9999999999999999998877777777777776666777666655 2344455433333 45555777878899999
Q ss_pred HHHHH---HHHHHHHHHHhhhhcC
Q 025348 234 SLYMF---IFKLYYAEFFLIHFIR 254 (254)
Q Consensus 234 ~f~~~---~~~~~~~~~~~~~~~~ 254 (254)
+||.. +-..+++.++..+..|
T Consensus 276 ~~F~~N~~ig~~~~~~~~~~~~~~ 299 (300)
T PRK12876 276 KFFLGNIYLALSFFVNMIGLFLLR 299 (300)
T ss_pred HHHHhcCHHHHHHHHHHHHHHccC
Confidence 98875 4344456666666554
No 7
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.7e-35 Score=258.32 Aligned_cols=219 Identities=18% Similarity=0.251 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||++|+|+|++| +|+||+|+|++|++|+..+..++ .++++.++..+|+.+..+. ..+.++.+
T Consensus 43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~~~~~l~~~~~~l~-~~~~~~~~ 119 (282)
T TIGR01475 43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILS--LALFLSASYFLNPLAFILS-PLVLLVLI 119 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 6889999999999999999999999 45899999999999999998887 6667777777777666554 34556678
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. +||++..+++..+..++..+..|+.. ..|. .+...+.+...+...+|+.+.+++||+||+|+|+
T Consensus 120 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~ 187 (282)
T TIGR01475 120 IYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDR 187 (282)
T ss_pred HHhh------HhccccccHHHHHHHHHHHHHHHHHH-----HhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 8983 79999988877666666554455433 2222 1101334445566788999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH-HHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQS-LYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~-f~~~ 238 (254)
+.|+||+|+++|+|++++.......+++......+...+.++ .|+++..+....+.++.+..|.+|+++|++ ||..
T Consensus 188 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 188 KNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred HcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999999988887777777776666665555554 455566666788899999999999888876 4543
No 8
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1e-35 Score=260.15 Aligned_cols=216 Identities=18% Similarity=0.241 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||++|+|+|++|+| +||+|+|++|++||..+..++ .++++.++..+|+.++.+. +.+.+..+
T Consensus 53 lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 129 (290)
T PRK12870 53 LGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVA--LLCAAGLAFFLNPLSFWLC-VAAVPVIF 129 (290)
T ss_pred HHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 678899999999999999999987765 799999999999999999998 8888888888887776654 45666778
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. .||++..+++..+..++..+..++.. ..| +.+.+.+++.+...+|+.+++++|++||+|+|+
T Consensus 130 ~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~ 195 (290)
T PRK12870 130 LYPL------AKRVFPVPQLVLAIAWGFAVLISWSA-----VTG---HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDL 195 (290)
T ss_pred Hhhh------hhhccccceeeehHHHHhHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 8984 69988888766555555444444432 223 233445555667789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhc--cccchHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTI--DLSDAKSMQSLYM 237 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~~~f~~ 237 (254)
|.|+||+|+++|+|++.++.. ++.++...+...++..+.++ .|+.+..+...++.+|+..+ |.+|++.|++||.
T Consensus 196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~ 271 (290)
T PRK12870 196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL 271 (290)
T ss_pred HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 999999999999998877665 44444444555666555554 45567777788999999888 7778888888876
Q ss_pred H
Q 025348 238 F 238 (254)
Q Consensus 238 ~ 238 (254)
.
T Consensus 272 ~ 272 (290)
T PRK12870 272 Q 272 (290)
T ss_pred H
Confidence 4
No 9
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.3e-35 Score=258.09 Aligned_cols=228 Identities=16% Similarity=0.187 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+++++++|++||++|+|+|++|+| +||+|+|++|++||+.+..++ .+.++.++..+|+.+..++ .++.+...
T Consensus 56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~--~~~~~~~~~~ln~~~~~l~-~~~~~~~~ 132 (300)
T PRK13106 56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAG--LILFFASAYLVNRWALLLS-PIVALIAM 132 (300)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 678999999999999999999999965 799999999999999987666 5566666677787776665 34555667
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPL-----EFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
.||. +||++..+++..++..+..+..|+.. ..|... ..+.+.++++....+|+.++|++|++||
T Consensus 133 ~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D 201 (300)
T PRK13106 133 SYPY------MKRYTAFANYHLASIQGLAVFSGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPD 201 (300)
T ss_pred HHhH------HhcCCcchHHHHHHHHHHHHHHHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 8883 79999998876555554433445432 222110 1112333445566789999999999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQS 234 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 234 (254)
+|+|+|.|+||+|+++| |+++++...++..+..+....++..++++ .|+.+..+...++.+|++.++.+ +++.+.
T Consensus 202 ~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 276 (300)
T PRK13106 202 AEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRA 276 (300)
T ss_pred hhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHH
Confidence 99999999999999999 77888888888777777777776666665 56677778889999999999887 555556
Q ss_pred HHHH------HHHHHHHHHH
Q 025348 235 LYMF------IFKLYYAEFF 248 (254)
Q Consensus 235 f~~~------~~~~~~~~~~ 248 (254)
|.++ ++.++.++++
T Consensus 277 F~~n~~ig~~~~~~~~~~~~ 296 (300)
T PRK13106 277 FYYNIYSSIVLGLGIIIDVL 296 (300)
T ss_pred HHHccHHHHHHHHHHHHHHH
Confidence 6555 4555555554
No 10
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.3e-35 Score=254.61 Aligned_cols=217 Identities=23% Similarity=0.259 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||++|+|+|++|+| +||+|||++|++||+.+...+ .++++.+++.+|+.+..+. +...+...
T Consensus 54 l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~--~~~~~~~~~~~n~~~~~l~-~~~~~~~~ 130 (291)
T PRK12874 54 LAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLN--ALIFIGVSYFINPLAFKLS-FPFLIVLG 130 (291)
T ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 578899999999999999999999985 799999999999999998888 6677777777787776665 45666678
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. +||++..+++.+++.++..+.+|+.. +.|. .+.+.+++.+...+|+.+++++|++||+|+|+
T Consensus 131 ~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~a-----v~g~---~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~ 196 (291)
T PRK12874 131 GYSY------FKRFSSLAHLVLGLSLGLAPIAGVVA-----VLGE---IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDK 196 (291)
T ss_pred HHhh------hcccccccHHHHHHHHHHHHHHHHHH-----HcCC---CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8984 79999999888777777665566543 2232 33444555666789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
+.|+||+|+++|+|++++.......++.+.....+.....++ .++++..+.+..+.+|++..+.+|++.|+.||..
T Consensus 197 ~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s 272 (291)
T PRK12874 197 KRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL 272 (291)
T ss_pred HcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 999999999999999887766655554544444443333333 4456777778888999988877777788887654
No 11
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.7e-35 Score=253.52 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML----RSPPLFIGLITWW 75 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~----~~~~~~~~~~~~~ 75 (254)
+++.++++++|++||+.|+|+|++|+| +||+|+|++|++||+.+..++ .++++.+++.+ |+.++.++ .+++
T Consensus 51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~--~~~~~~~~~~l~~~~n~l~~~l~-~~~~ 127 (294)
T PRK12873 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL--LLLSLFVVLSLPQPSRNLCLSLA-FLAL 127 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHH-HHHH
Confidence 678899999999999999999999986 799999999999999999988 77777766554 44555554 3556
Q ss_pred HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348 76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDV 155 (254)
Q Consensus 76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 155 (254)
+....||. +||++..+++..++.++..+.+||.+ +.|. .+...+.++++....+|+..+|++|++||+
T Consensus 128 ~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ 195 (294)
T PRK12873 128 PPILIYPS------AKRWFAYPQAILALCWGFAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADR 195 (294)
T ss_pred HHHHHHHH------HHhccccchHHHHHHHHhHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 66788983 79999999888777776555556532 3332 111123344446678999999999999999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc--hHHHH
Q 025348 156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD--AKSMQ 233 (254)
Q Consensus 156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~--~~~~~ 233 (254)
|+|+|+|+||+|+++|++ ++.....++.++...+...|...+.++ .|+++..+.+.++.+|++.+|.+| +++|.
T Consensus 196 edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~ 271 (294)
T PRK12873 196 RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIG 271 (294)
T ss_pred hhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 999999999999999985 555566777777777777887777766 567788888899999999999987 47775
Q ss_pred HHH-HHHHHHH
Q 025348 234 SLY-MFIFKLY 243 (254)
Q Consensus 234 ~f~-~~~~~~~ 243 (254)
++| .+.|.++
T Consensus 272 ~~F~~n~~~G~ 282 (294)
T PRK12873 272 NHFSNQVILGS 282 (294)
T ss_pred HHHHhccHHHH
Confidence 555 4455444
No 12
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.1e-34 Score=250.75 Aligned_cols=221 Identities=19% Similarity=0.218 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+++++++|++|||+|+|+|++|+| +||+|+|++|++||..+...+ .+.++.++...|+.+..+. +.+.+...
T Consensus 49 l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~--~~~~~~l~~~~~~~~~~l~-~~~~~~~~ 125 (291)
T PRK12886 49 MAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLS--SLLMLFAAWFLNPLCLYLS-PPALFFLL 125 (291)
T ss_pred HHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 678899999999999999999999986 799999999999999886655 5555556666787766654 34666678
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. +||++..+++.+++.++.....++.. ..| +.+.+.+++.+...+|+.+++++++++|+|+|+
T Consensus 126 ~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~ 191 (291)
T PRK12886 126 LYSY------CKRFTALAHVVLGFCLALAPLGAWIA-----IRG---TIELPAILLGLAVLFWVAGFDILYALQDLEFDR 191 (291)
T ss_pred HHhh------hhccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHH
Confidence 8984 69999988887777666554445432 223 234455556666789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-hHHHHHHH-H
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD-AKSMQSLY-M 237 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~f~-~ 237 (254)
|+|+||+|+++|+|++++.........+......+...+.++ .|.++..+....+.+|.+..+.+| ++.|+++| .
T Consensus 192 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 268 (291)
T PRK12886 192 KEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNM 268 (291)
T ss_pred HcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 999999999999999988776666666655555554444444 455555566666678888888877 45787754 4
Q ss_pred HHHHH
Q 025348 238 FIFKL 242 (254)
Q Consensus 238 ~~~~~ 242 (254)
+.|.+
T Consensus 269 ~~~~~ 273 (291)
T PRK12886 269 NGYIS 273 (291)
T ss_pred hHHHH
Confidence 44443
No 13
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-34 Score=251.52 Aligned_cols=216 Identities=17% Similarity=0.196 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+++++++|++||++|+|+|++|+| +||+|||++|++||..+...+ .++++.+++.+|+.+..+. +.+.+..+
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 125 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVL--VLVAFLLVLTLNTLTIWLS-VAALALAW 125 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 577899999999999999999998765 799999999999999999998 7778777777887666554 45666788
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. .||++..+++..++.++..+.+++.. ..+ +.+...+++.+...+|+...++.|++||+|+|+
T Consensus 126 ~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 191 (282)
T PRK12848 126 IYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQG---SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL 191 (282)
T ss_pred HHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 9973 68888887776666555444445433 222 234455556667789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
++|+||+|+++|+|++.+.. .++.+........++..+.++ .|.++..+....+.+|++..|.+|+++|+++|..
T Consensus 192 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 266 (282)
T PRK12848 192 KIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLN 266 (282)
T ss_pred HcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999887765 344444444444444444443 4566777788899999999999888877666643
No 14
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=3.2e-34 Score=249.96 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.+++++++|++|||+|+|+|++|+| +||+|+|++|++|+..+..++ .++++.+++.+|+.+..+. +++.++.+
T Consensus 47 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~l~-~~~~~~~~ 123 (281)
T TIGR01474 47 VGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQ--LLVALGVLLQLNPLTILLG-VASLALVA 123 (281)
T ss_pred HHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHH-HHHHHHHH
Confidence 567899999999999999999998765 799999999999999999888 8888888887887766554 56777789
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. +||++..+++..++.++....+|++. ..| +.+.+.+.+.....+|+.+.+++|++||+|+|+
T Consensus 124 ~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g---~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~ 189 (281)
T TIGR01474 124 TYPF------MKRITYWPQLVLGLAFGWGALMGWAA-----VTG---DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDI 189 (281)
T ss_pred Hhch------hcccccccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 9983 79999888877666665444455432 223 234444445566788999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
|+|+||+|+++|+|++++.. .++.++.....+.+...+.++ .|.++..+....+.+++.+.|.+|+++|+++|..
T Consensus 190 ~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 264 (281)
T TIGR01474 190 KIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA 264 (281)
T ss_pred HcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999998865543 344443333334444434444 4556677778888999988888888888877764
No 15
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-33 Score=247.55 Aligned_cols=221 Identities=23% Similarity=0.368 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++++++|++||+.|+|+||+|+| +||+|||++|+++|+.+..++ .++++.+++.+|+.++.+. +.+.++.+
T Consensus 54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~--~~~~~~~a~~l~~~~~~l~-~~~~~l~~ 130 (289)
T COG0382 54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILL--LLLGLALALLLNPLAFLLS-LAALVLAL 130 (289)
T ss_pred HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 577899999999999999999999999 899999999999999999999 8999999999998776554 56888889
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.|+ ++||.+..++.+.+..++.....|+.. ..| +.+.+.+++.+...+|+.+++++|+++|+|+|+
T Consensus 131 ~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~---~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~ 196 (289)
T COG0382 131 AYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGG---SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDR 196 (289)
T ss_pred HHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhC---ccchHHHHHHHHHHHHHHHHHHHHhccCccchH
Confidence 995 589999999987776666544444432 222 124456667777889999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFI 239 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~ 239 (254)
+.|+||+|+.+|+|++..+..... .....+...+...+... ..+..++......+.+|+...|.+|++.|+++|..-
T Consensus 197 ~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (289)
T COG0382 197 KAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVN 273 (289)
T ss_pred hcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHh
Confidence 999999999999999988887666 33333344444333221 256778888889999999999998999999988763
Q ss_pred HHH
Q 025348 240 FKL 242 (254)
Q Consensus 240 ~~~ 242 (254)
...
T Consensus 274 ~~~ 276 (289)
T COG0382 274 LLL 276 (289)
T ss_pred hHH
Confidence 333
No 16
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=248.73 Aligned_cols=217 Identities=18% Similarity=0.144 Sum_probs=162.9
Q ss_pred ChHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVG 78 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
+++++++++++|++|||+|+|+|++++| +||+|+|++|++|+..+..++ .++|+.+.+..|+.++.+. +.+.+..
T Consensus 78 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~g~~l~~~~~~~~~~l~-~~~~~~~ 154 (314)
T PRK12878 78 FVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQ--ALVGLAVLLQFNWFAIALG-IASLAIV 154 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 3688999999999999999999998875 799999999999999988888 7888877777786666554 5677778
Q ss_pred hHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 025348 79 AAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGD 158 (254)
Q Consensus 79 ~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D 158 (254)
+.||. +||++..++...+..++....+|++. ..| +.+.+.+.++....+|+...++++++||+|+|
T Consensus 155 ~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D 220 (314)
T PRK12878 155 AAYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFG---SLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDD 220 (314)
T ss_pred HHHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhC---CCchHHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 89983 79988877765555554444445443 223 23444455556678899999999999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
+|+|+||+|+++|++++++.... +.+......+.+...+.++ .+.++.......+.+|..+.|.+|++.|+++|..
T Consensus 221 ~~aGi~slpv~~G~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 221 ALIGVKSTARLFGDHTKTWLVLF-YGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred HHcCCcccchHhchhhHHHHHHH-HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 99999999999999999887743 3333333333443334444 3445555566678899999888888888888864
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=246.45 Aligned_cols=216 Identities=15% Similarity=0.188 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++++++|+++|++|||+|+|+|++|+| +||+|+|++|++|+..+...+ .++++.+++.+|+..+.+. +++.+..+
T Consensus 52 l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 128 (285)
T PRK12847 52 IGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFIL--LLIALVILLLLNKTTIYLS-FIAVILIV 128 (285)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 577899999999999999999998775 799999999999999999988 8888877777887666554 56777788
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.||. .||++..+++..++.++..+.+++.. ..| +.+.+.++..+...+|+.+.++++++||+|+|+
T Consensus 129 ~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 194 (285)
T PRK12847 129 LYPL------MKRFFYWPQLFLGFTFNMGILMAFAA-----VQN---QLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDL 194 (285)
T ss_pred hccc------cccCCcccHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 9984 68888877766555555433344332 223 234555566677789999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 238 (254)
|+|+||+|+++|+|++.++........+.. ...+...+... +++....+....+.+|+...|.+|+++|+++|..
T Consensus 195 ~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~---~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 269 (285)
T PRK12847 195 KIGVKSTAIYFGNKTRKYILRLYIISLILW-LILGIISSLHN---IFYLAILAAAGIFYYQYKLLDFDNPANCMYAFKA 269 (285)
T ss_pred HcCCchhHHHhccccHHHHHHHHHHHHHHH-HHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999988776655444443 33333333322 2334555556788899988888888777766543
No 18
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=242.24 Aligned_cols=225 Identities=20% Similarity=0.336 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
++.+++++++|++||++|+|+|++|+|+||+++|++|+++++.+..++ .++++.++..+|+....+. +++.+.++.|
T Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Y 120 (279)
T PRK12884 44 LTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILL--FILGLIAAYLISPLAFLVV-ILVSVLGILY 120 (279)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999888 7778877777786655554 4677778999
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
|. ++||++..++...+..++.+...++.. .+. .+.+.+.......+|+...++++|++|+|+|++.
T Consensus 121 s~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~ 186 (279)
T PRK12884 121 NW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA------VGE---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLR 186 (279)
T ss_pred HH-----hhccccchhHHHHHHHHHHHHHHHHHH------hCC---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHc
Confidence 94 589999877766666665443333321 121 1123444455667889999999999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHHHH
Q 025348 162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQT-RTIDLSDAKSMQSLYMFIF 240 (254)
Q Consensus 162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~~~ 240 (254)
|+||+|+++|+|+++++........++...........++ .|.+...+....+.++. +..+.+|+++++++..+.+
T Consensus 187 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (279)
T PRK12884 187 GARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITL 263 (279)
T ss_pred CCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999998887766666654433332222333 34445555666666665 4556667777887765555
Q ss_pred HHHHHH
Q 025348 241 KLYYAE 246 (254)
Q Consensus 241 ~~~~~~ 246 (254)
.++...
T Consensus 264 ~~~~~~ 269 (279)
T PRK12884 264 TAMLLA 269 (279)
T ss_pred HHHHHH
Confidence 554443
No 19
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=5e-33 Score=246.29 Aligned_cols=202 Identities=23% Similarity=0.336 Sum_probs=142.0
Q ss_pred HHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcc-------hhHHHHHHHHHHHHHh
Q 025348 7 MNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLR-------SPPLFIGLITWWIVGA 79 (254)
Q Consensus 7 ~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~-------~~~~~~~~~~~~~~~~ 79 (254)
..+++|++|||+|+|+|++|+|+||+++|++|++|++.+...+ ..+++.++..++ .+.+....+++.++++
T Consensus 62 ~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l--~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~ 139 (331)
T PRK12392 62 GTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIV--LLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAY 139 (331)
T ss_pred HHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHH--HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999999998888 555554443322 1223333346777899
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
+||. ||+++||+++.+....++.++.....++. +..+. .+.+.++..+..++|+.+++++||++|+|+|+
T Consensus 140 ~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~ 209 (331)
T PRK12392 140 IYSA--PPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDK 209 (331)
T ss_pred hhcC--CchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence 9994 88899999876554433333322222221 23332 33444455566778999999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRT 223 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (254)
+.|+||+|+++|+|+++++......+.....+..++....++ .++....+.+.++.+|.+.
T Consensus 210 ~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l 270 (331)
T PRK12392 210 EGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQL 270 (331)
T ss_pred HcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876665566655555555555444 3344555556666666653
No 20
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.3e-33 Score=241.51 Aligned_cols=223 Identities=26% Similarity=0.356 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
++.+++++++|++||++|+|+|++|+|+||+|+|++|++|++.+..++ .++++.+++.+|+....+. .++.++.+.|
T Consensus 45 l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l--~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Y 121 (276)
T PRK12882 45 AAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILL--FAAGVALAFLLPPLCLAIA-LFNSLLLVLY 121 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999 8888888888886665554 4566678899
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
|. |+||++..++...+...|.....|+.. .+.. ...+.+...+..++|+..++++||+||+|+|+++
T Consensus 122 t~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~------~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~ 188 (276)
T PRK12882 122 AE-----TLKGTPGLGNASVAYLTGSTFLFGGAA------VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAE 188 (276)
T ss_pred HH-----HHhcccchhHHHHHHHHHHHHHHHHHH------hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHc
Confidence 84 689999877655443333222233221 2211 1122333445556788999999999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH-HHHHHHhhhhccccchHHHHHHHHH-H
Q 025348 162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVL-GFILWHQTRTIDLSDAKSMQSLYMF-I 239 (254)
Q Consensus 162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f~~~-~ 239 (254)
|+||+|+++|+|+++++...............-.....++ .|.....+. ...+.++.+..|.+|++.|+++|.. .
T Consensus 189 G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~ 265 (276)
T PRK12882 189 GARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGM 265 (276)
T ss_pred CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999988776655444433221111222233 334343333 3444556667777788888776543 5
Q ss_pred HHHH
Q 025348 240 FKLY 243 (254)
Q Consensus 240 ~~~~ 243 (254)
|-+.
T Consensus 266 ~~g~ 269 (276)
T PRK12882 266 FLAL 269 (276)
T ss_pred HHHH
Confidence 5443
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=240.10 Aligned_cols=216 Identities=21% Similarity=0.269 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
++++++++++|++||++|+|+|++|+|+||+|||++|++|++.+...+ .++++.++..+|+.+..+. +.+.++.+.|
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y 120 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITL--FIVGLILSIFINIYAFLIA-LLNSILLYLY 120 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999998 8888877777887666554 4566678899
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
|. ++||++..++...+...|.....|+.. ..+ ..+.+.+.....+|+.+.+++||+||+|+|++.
T Consensus 121 s~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~~~-----~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~ 185 (279)
T PRK09573 121 AK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-----VFN-----VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKE 185 (279)
T ss_pred HH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-----Hcc-----chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHC
Confidence 84 589999887655444444333444432 111 122333445556888899999999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh-hhccccchHHHHHHHHH
Q 025348 162 GLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQT-RTIDLSDAKSMQSLYMF 238 (254)
Q Consensus 162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f~~~ 238 (254)
|+||+|+++|+|++.++......+..............++ .|..+..+....+.++. +..+.+||++|++-.+.
T Consensus 186 G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (279)
T PRK09573 186 NVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKASKY 260 (279)
T ss_pred CCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999988876555444443322111111233 44555555555566653 33445567777665444
No 22
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=241.50 Aligned_cols=177 Identities=22% Similarity=0.300 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
++..++++++|.+|||+|+|+|++|+|+||+++|++|++|++.+..++ .++++.+++.+|+....+. +.+.++++.|
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l--~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Y 148 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVL--TVLGLAVAYLLGPWVFLAA-LLGLFLAWIY 148 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHH--HHHHHHHHHHHChHHHHHH-HHHHHHHHHh
Confidence 355668999999999999999999999999999999999999999888 7778877777886655443 4677778999
Q ss_pred cCCCccccccccchhHHHHHHH-HHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHH
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMI-LNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKE 160 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~ 160 (254)
|. ||+++||++..+++..+. +++.....++.. ..+. ..+...++..+..++++.+++++||++|+|+|++
T Consensus 149 t~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~-----~~~~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~ 219 (314)
T PRK07566 149 SA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA-----FGAG--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQ 219 (314)
T ss_pred cC--CccccccccchhhHHHHHHHHHHHHHHHHHH-----hccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 94 788999999766554443 333222222221 1111 1234444455566778889999999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHH
Q 025348 161 FGLRTLPVILGKEKVFSISVSMLLMAYGAA 190 (254)
Q Consensus 161 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~ 190 (254)
+|+||+|+++|+|+++++...+..++++..
T Consensus 220 aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 220 LGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred cCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877776666654
No 23
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=3.1e-32 Score=237.94 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
+++.++++++|.+|||+|+|+|++|+|+||+++|++|++|++.....+ ..+++.++..++.+......+++.+.++.|
T Consensus 45 ~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~--~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Y 122 (283)
T TIGR01476 45 MAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVL--TVAGLLVALVLGNWLIVLFTVVGIVLAVIY 122 (283)
T ss_pred HHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 467789999999999999999999999999999999999999998888 777777777666555333345677789999
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
| .||+++||+++.+++..+...+.......+ ...+ ..+...++..+..++++.+++++||+||+|+|++.
T Consensus 123 s--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~ 192 (283)
T TIGR01476 123 S--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGH-----AIFA---PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQL 192 (283)
T ss_pred c--CchhhhccCCCccHHHHHHHHHHHHHHHHH-----HHhC---CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHc
Confidence 9 589999999976665544433221111111 1112 13344444455667889999999999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHH
Q 025348 162 GLRTLPVILGKEKVFSISVSMLLMAYGAAI 191 (254)
Q Consensus 162 G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~ 191 (254)
|+||+|+++|+|++++++..+..+++...+
T Consensus 193 G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 222 (283)
T TIGR01476 193 GLRSLPVMIGVKRAAIVAVTTINVFQAMVI 222 (283)
T ss_pred CCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877777665543
No 24
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.6e-31 Score=232.69 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-LRSPPLFIGLITWWIVG 78 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-~~~~~~~~~~~~~~~~~ 78 (254)
++..++++++|++|||+|+|+|++|+ |+||+|+|++|++||..++..+ ..+++.++.. +|+.+.....+...+..
T Consensus 43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 120 (279)
T PRK12869 43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSAL--SALGTALGFLLLGPLTALFIALGWFFYA 120 (279)
T ss_pred HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999998 5899999999999999999888 7778777766 67654333233444567
Q ss_pred hHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Q 025348 79 AAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGD 158 (254)
Q Consensus 79 ~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D 158 (254)
+.||. ++||++.++...+.+.++..+..|+.. ..| +.+.+.++..+...+|+.+.....+++|+|||
T Consensus 121 ~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd 187 (279)
T PRK12869 121 VVYTI-----WLKPRTWLNIVIGGFAGNAAALAGYAS-----GTG---SLDLEAVLLSFLIYLWTPGHIWSLALKYREDY 187 (279)
T ss_pred hhhCc-----ccccCChHHHHHHHHHHHHHHHHHHHH-----HhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 78984 589999988887777776655445433 122 23445555556677899888887888999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH-HHHHHHHhhhhccccchHHHHH-HH
Q 025348 159 KEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSV-LGFILWHQTRTIDLSDAKSMQS-LY 236 (254)
Q Consensus 159 ~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~d~~~~~~~~~-f~ 236 (254)
+++|+||+|+++|+|++++.......+........+. ...++ .|.....+ .+..+.+|.+..+.+|+++|++ |.
T Consensus 188 ~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 263 (279)
T PRK12869 188 RRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFK 263 (279)
T ss_pred HHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Confidence 9999999999999999988776555444443333332 23333 34444433 3445566666666555666655 55
Q ss_pred HHHHHHHH
Q 025348 237 MFIFKLYY 244 (254)
Q Consensus 237 ~~~~~~~~ 244 (254)
.++|.+..
T Consensus 264 ~s~~~l~~ 271 (279)
T PRK12869 264 ASSPYLAL 271 (279)
T ss_pred HHHHHHHH
Confidence 55666544
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.1e-31 Score=235.69 Aligned_cols=217 Identities=13% Similarity=0.116 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHH-H
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-LRSPPLFIGLITWWI-V 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-~~~~~~~~~~~~~~~-~ 77 (254)
++++++++++|++|||+|+|+|++|+ |+||+|+|++|++||..+...+ .++|+.+++. .|+.+..+. .++.+ .
T Consensus 51 l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l--~~~g~~l~~~l~~~~~~~l~-~~~~~~~ 127 (296)
T PRK04375 51 LGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVL--GVLGFLLLGLFVNPLAAWLT-LAGIFFY 127 (296)
T ss_pred HHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 67889999999999999999999988 5899999999999999999888 7777766543 465555443 23333 4
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
...||. ++||++.++...++..++..+.+|++. ..| +.+...+++.+...+|+...++.++++|+||
T Consensus 128 ~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D 194 (296)
T PRK04375 128 VVVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWAA-----VTG---SLSWEALILFLIIFLWTPPHFWALAIFRKDD 194 (296)
T ss_pred HHHhcc-----chhcCCccchHHHHHHHHhHHHHHHHH-----hCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568984 589999877766666665444455543 223 2345555666777899999999999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH-HHHHHHHHHHHhhhhccccchHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMI-GHSVLGFILWHQTRTIDLSDAKSMQSLY 236 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~d~~~~~~~~~f~ 236 (254)
|+++|+||+|+++|+|++++.......+..............++ .|.+ +.......+.++++..+.+|++.|++.|
T Consensus 195 ~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F 271 (296)
T PRK04375 195 YAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLF 271 (296)
T ss_pred HHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHH
Confidence 99999999999999999887665443333322222211111233 3333 3444566777888888777777665555
Q ss_pred H
Q 025348 237 M 237 (254)
Q Consensus 237 ~ 237 (254)
.
T Consensus 272 ~ 272 (296)
T PRK04375 272 R 272 (296)
T ss_pred H
Confidence 4
No 26
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.9e-30 Score=227.64 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=158.2
Q ss_pred ChHHHHHHHHHHHhhcccchhhhhccC-----CCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVEIDKVNK-----PHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLIT 73 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~-----~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~ 73 (254)
+++++++|+++|.+|||+|+|.|+.|+ |+||+++|++|++|++....++ ++..+++.+....+...+.+ .++
T Consensus 46 ~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l-~~~ 124 (296)
T PRK05951 46 LLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTL-ALL 124 (296)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHH
Confidence 368899999999999999977655554 6799999999999999988876 23333444444445433333 467
Q ss_pred HHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 025348 74 WWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLP 153 (254)
Q Consensus 74 ~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (254)
+.+.++.||. ||+++|+++++|..++..++..++ +|.+.. +++ ..+.+.+...+..++++.....+||+|
T Consensus 125 ~~~~~~~Yt~--~P~~lky~glGe~~v~~~~g~~~v-lg~~~~-~~~------~~~~~~~~~sl~~~l~~~~il~~n~~~ 194 (296)
T PRK05951 125 GVFLWTCYMG--PPFFLKYRWLGEHLVFYAWSHMLV-MGLIYV-WLG------NLSSPNLLAGVPLGLLMALVLLSNNLR 194 (296)
T ss_pred HHHHHHHHcC--CCcccCCCCchHHHHHHHHHHHHH-HHHHHH-HhC------cccHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 8888999994 888899999999877766654433 443331 222 233445555566778888999999999
Q ss_pred ChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Q 025348 154 DVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQ 233 (254)
Q Consensus 154 D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~ 233 (254)
|+|+|++.|+||+|+++|+|++ +........+|+..+........++....+.+++......+.++.++.|.++++.|.
T Consensus 195 D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~ 273 (296)
T PRK05951 195 DIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATV 273 (296)
T ss_pred cchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHH
Confidence 9999999999999999999999 666566666666554433322222222244555555556667777777776666777
Q ss_pred HHHHH
Q 025348 234 SLYMF 238 (254)
Q Consensus 234 ~f~~~ 238 (254)
+.+..
T Consensus 274 ~~~~~ 278 (296)
T PRK05951 274 QLFML 278 (296)
T ss_pred HHHHH
Confidence 76665
No 27
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=5.8e-31 Score=227.32 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
..++..|.+.|.+|||+|+|+|++|+|+||+++|++|++|++.+...+ ++..+++.+++..|+..+.+. +++.++.+
T Consensus 54 ~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~ 132 (292)
T PRK13595 54 YLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFV 132 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 345677889999999999999999999999999999999999875544 223445667777776665554 56778899
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.|| .||+|+|++|+.++++.... +. |+.. .....|.. ..... .....+|..++++++++||+|+||
T Consensus 133 ~YS--~pPlRlK~rp~l~~l~~~~~-g~----p~~~--~~~~~g~~---~~~~~--l~a~~~w~~g~dii~ai~DiegDr 198 (292)
T PRK13595 133 GYS--LPPLRFKARPFLDGLSNAAY-AL----PLAL--PALALGAP---VPWPP--LLALMAWSVGKHAFDAAQDIPADR 198 (292)
T ss_pred HHc--cCccchhcCcchhHHHHHHH-HH----HHHH--HHHHcCCc---chHHH--HHHHHHHHHHHHHHHhccChHhHH
Confidence 999 59999999999998876432 22 2221 11233321 11221 234567889999999999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYMFI 239 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~~ 239 (254)
+.|+||+|+++|+|++.+++..+..++...+.... ...+. . ..+....+..|.+ .|.+.++..+.|..++
T Consensus 199 ~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~---~~~~~--~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 268 (292)
T PRK13595 199 AAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS---RLTAL--A----LWLICGGMALALW-RRPTPETAHRLYPLSI 268 (292)
T ss_pred HcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc---chHHH--H----HHHHHHHHHHHHh-cCCCHHHHhccchHHH
Confidence 99999999999999999998887766655543322 12221 1 1122222222333 5776777888888888
Q ss_pred HHHHHHHHH
Q 025348 240 FKLYYAEFF 248 (254)
Q Consensus 240 ~~~~~~~~~ 248 (254)
|..+..+++
T Consensus 269 ~~~~~~g~~ 277 (292)
T PRK13595 269 VTPWIVGTV 277 (292)
T ss_pred HHhHHHHHH
Confidence 887776654
No 28
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.98 E-value=1.8e-30 Score=232.96 Aligned_cols=219 Identities=21% Similarity=0.272 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHh-------cchhHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIM-------LRSPPLFIGLITW 74 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~-------~~~~~~~~~~~~~ 74 (254)
++..++++++|++|||+|+|+|++|+|+||+++|++++++++.....+ ..+++.+++. .++..+.+ .+++
T Consensus 130 l~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l--~~~~l~l~~~L~~~~~~~~~~~~~l-~l~g 206 (375)
T PLN00012 130 MSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL--LLGGLGLAYTLDVWAGHDFPIVFYL-ALGG 206 (375)
T ss_pred HHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHhccccHHHHHH-HHHH
Confidence 467788999999999999999999999999999999999999876665 3333333322 23333333 3467
Q ss_pred HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
.++.++||. ||+++||+++.+++..+...+ .+|++.. + ...| ..+...++..+..++|..++++.||++|
T Consensus 207 i~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~---~lp~~~g-~-a~~g---~~s~~~illal~~~l~~lai~ivnd~~D 276 (375)
T PLN00012 207 SLLSYIYSA--PPLKLKQNGWIGNYALGASYI---SLPWWAG-Q-ALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKS 276 (375)
T ss_pred HHHhhhhcC--CchhhhHhccHhHHHHHHHHH---HHHHHHH-H-HHcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 778999994 888999999987754333332 2333321 1 2233 2344555555667789999999999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-HHHHHHHHHHHHhhhhccccchHHHH
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTM-IGHSVLGFILWHQTRTIDLSDAKSMQ 233 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~~~~~~~ 233 (254)
+|+|++.|+||+|+++|+|++++++...+.+..... .++...... .++. +...+....+.++.+ ...+|++++.
T Consensus 277 ie~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~--~~~l~~~~~--~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~ 351 (375)
T PLN00012 277 IEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV--AGYLLAIGK--PYYALALLGLIIPQIFFQFK-YFLPDPVKND 351 (375)
T ss_pred hhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH--HHHHHHHhH--HHHHHHHHHHHHHHHHHHHH-HHhcCHHHHH
Confidence 999999999999999999999998765444443322 222221111 1221 112222233333333 3334777777
Q ss_pred HHHHH
Q 025348 234 SLYMF 238 (254)
Q Consensus 234 ~f~~~ 238 (254)
..|..
T Consensus 352 ~~~~~ 356 (375)
T PLN00012 352 VKYQA 356 (375)
T ss_pred HHHHH
Confidence 77765
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.98 E-value=8.2e-31 Score=228.61 Aligned_cols=222 Identities=16% Similarity=0.162 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccC--CCCccccCccCHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHH-
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNK--PHLPLASGDFSIGEGVAIAVISTMTLQSVA-MGIMLRSPPLFIGLITWWIV- 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~-l~~~~~~~~~~~~~~~~~~~- 77 (254)
++++++++++|++|||+|+|+|++|+ |+||+|+|++|++|+..++..+ .++|+. +....|+....+. +.+.++
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~--~~~g~~il~~~~~~~~~~l~-~~~~~~~ 118 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLL--GVLGVAILAAFVNPLAALLG-LFGIFFY 118 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 67899999999999999999999987 5899999999999999999888 777776 4444676655443 345544
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
.+.||. .+||++.++.+.+++.++..+..|++. ..| +.+.+.+++.....+|+...+...+++|+|+
T Consensus 119 ~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g---~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~d 185 (280)
T TIGR01473 119 VIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWAA-----VTG---SISLGAWLLFAIIFLWQPPHFWALALKYKDD 185 (280)
T ss_pred HhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 778984 379999988877777666554445433 223 2344555556667889888888888999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-HHHHHHHHHHHHhhhhcccc-chHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTM-IGHSVLGFILWHQTRTIDLS-DAKSMQSL 235 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~d~~-~~~~~~~f 235 (254)
|+++|+||+|+++|+|++.+..............+.+.....++ .|. .+..+....+.+|++..|.+ |++.|++.
T Consensus 186 d~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 262 (280)
T TIGR01473 186 YRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKL 262 (280)
T ss_pred HHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999998877665544333333333332223333 333 45555667777888777765 56555544
Q ss_pred H-HHHHHH
Q 025348 236 Y-MFIFKL 242 (254)
Q Consensus 236 ~-~~~~~~ 242 (254)
| ...+.+
T Consensus 263 f~~s~~~~ 270 (280)
T TIGR01473 263 FKFSLIYL 270 (280)
T ss_pred HHHHHHHH
Confidence 4 444443
No 30
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.98 E-value=2.1e-30 Score=228.33 Aligned_cols=176 Identities=24% Similarity=0.387 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIML-------RSPPLFIGLITW 74 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~-------~~~~~~~~~~~~ 74 (254)
+++.++++++|.+|||+|+|.|+.|+|+||+++|++|+++++.....+ ..+++.++..+ +++.+.+ .+++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l--~~~~~~lg~~l~~~~~~~~~~~~~l-~~~~ 137 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLL--FIAGIAIAFILDLWAGHEFPNVFVL-ALFG 137 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHhhcccchHHHHH-HHHH
Confidence 466899999999999999999999999999999999999999988877 44444443322 2233333 4567
Q ss_pred HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
.+.++.||. ||+++||++..+++..+...+. +|++.. + ...| +.+...++..+..++|+.++++.||++|
T Consensus 138 ~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~---~~~~~~-~-a~~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D 207 (306)
T TIGR02056 138 SFIAFIYSA--PPLKLKQNGWLGNFALGASYIA---LPWWAG-H-ALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKS 207 (306)
T ss_pred HHHHHHHcC--ChhhhhhcccHHHHHHHHHHHH---HHHHHH-H-HHhC---CCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 788999994 8889999987665543333322 222221 1 1223 2344444555666789999999999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHH
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAA 190 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~ 190 (254)
+|+|++.|+||+|+++|+|++++++..+...++...
T Consensus 208 ~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~ 243 (306)
T TIGR02056 208 VEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI 243 (306)
T ss_pred hHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887766656544
No 31
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=9.5e-32 Score=224.22 Aligned_cols=220 Identities=15% Similarity=0.117 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
.|+++||+++|.+||..|+|+|++++| .||++||++|++||+.+..++ ..+|+.+..++|+.+..+. ..++.+.+
T Consensus 110 ~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~q--l~~gLgiLlqLn~ysi~lg-~~sl~~v~ 186 (353)
T KOG1381|consen 110 VGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQ--LSLGLGILLQLNWYSIALG-ASSLALVI 186 (353)
T ss_pred ccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHH--HHHhHHHHHhccHHHHHhc-ccccccEE
Confidence 478999999999999999999999988 599999999999999999999 8888888888887766553 45666777
Q ss_pred HhcCCCccccccccchhHHHHH--HHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTI--MILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
.|+. +||.+.++++.- .+.||.+ +||- +.-|. . .+...+.+++.-..|++.+|++|++||+++
T Consensus 187 ~ypl------~kr~TY~pq~vLgltfnwGAl--lGw~-----A~~g~-~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~d 251 (353)
T KOG1381|consen 187 TYPL------MKRFTYWPQLVLGLTFNWGAL--LGWC-----ALKGS-L-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRD 251 (353)
T ss_pred Eeeh------hhhcchhHHHHHhhhcchhhh--hcch-----hhcCc-c-ChhhhhHHHHhhhhhhhhhhhhhhcccchh
Confidence 8984 799999987542 2445532 3442 22232 1 111233456666789999999999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSDAKSMQSLYM 237 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 237 (254)
|.++|+|+.+.++|+++..|+. .+-+.....+...|+.+...| +|++++.+.+.++.+|..++|+||+++|.++|.
T Consensus 252 Dvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~ 327 (353)
T KOG1381|consen 252 DVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFK 327 (353)
T ss_pred hhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHH
Confidence 9999999999999999776665 344444555567888888888 677778888999999999999999999988885
Q ss_pred H-HHHHH
Q 025348 238 F-IFKLY 243 (254)
Q Consensus 238 ~-~~~~~ 243 (254)
. .|.++
T Consensus 328 sN~ntGl 334 (353)
T KOG1381|consen 328 SNSNTGL 334 (353)
T ss_pred hcCcchH
Confidence 4 44443
No 32
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=9.2e-29 Score=217.12 Aligned_cols=189 Identities=18% Similarity=0.189 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHhhcccchh--hhh--ccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVE--IDK--VNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWW 75 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~--~D~--~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~ 75 (254)
++++++|.++|.+|||+|+| .|+ .++|+||+++|++|++|+......+ ++.++|+.+....+.+.+.. .+++.
T Consensus 45 l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-~~~~~ 123 (293)
T PRK06080 45 LAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLL-GLLCI 123 (293)
T ss_pred HHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHH
Confidence 67889999999999999994 675 4567899999999999999887777 23344554444445443333 35677
Q ss_pred HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCCh
Q 025348 76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDV 155 (254)
Q Consensus 76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 155 (254)
++++.||. ||.++|++++++..++..++...+..+++. ++ + ..+.+.++..+..++|+...++.||++|+
T Consensus 124 ~~~~~Ys~--~p~~~~~~glge~~~~~~~G~~~~~~~~~~--~~---~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~ 193 (293)
T PRK06080 124 AAAILYTG--GPKPYGYTGLGELFVGVFFGLVIVLGTYYL--QA---G---TVDSAVFLPALPCGLLIGAVLLANNIRDI 193 (293)
T ss_pred HHhhhhcC--CCCccCCCCcHHHHHHHHHHHHHHHHHHHH--hc---C---CCCHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 78899994 788899999888766655444333333332 21 2 23455666667788999999999999999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348 156 EGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL 201 (254)
Q Consensus 156 e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 201 (254)
|+|++.|+||+|+++|+|+++++...+..++++..+........++
T Consensus 194 ~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (293)
T PRK06080 194 ETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP 239 (293)
T ss_pred hhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999999888887765544433343
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=7.1e-29 Score=216.14 Aligned_cols=163 Identities=25% Similarity=0.393 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
++.++.++++|++||++|+|+|++|+|+||+|+|++|+++++.+..++ .++|+.+++.+|+.++.+. +.+...++.|
T Consensus 44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l--~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y 120 (277)
T PRK12883 44 LVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLL--FAVGLALAYLINIEAFLFA-LGAYVLMFLY 120 (277)
T ss_pred HHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 467788999999999999999999999999999999999999998888 7788888877887666554 4566778999
Q ss_pred cCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHc
Q 025348 82 SIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 82 s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
|. ++||.+..++...+...|.....|+.. . + ..+...+. ....++++...++.||++|+|+|++.
T Consensus 121 ~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~---~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~ 185 (277)
T PRK12883 121 AW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V-G---RIGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAK 185 (277)
T ss_pred hh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h-c---cccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHc
Confidence 95 579888766554333333222233321 1 2 12222222 22345667788999999999999999
Q ss_pred CCcccceeechHHHHHHHHHH
Q 025348 162 GLRTLPVILGKEKVFSISVSM 182 (254)
Q Consensus 162 G~~Tl~v~~G~~~~~~~~~~~ 182 (254)
|+||+|+++|+|+++++....
T Consensus 186 G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 186 GAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred CCcCcChHhcHHHHHHHHHHH
Confidence 999999999999998876544
No 34
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=8.2e-28 Score=212.46 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccC----CCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNK----PHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWW 75 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~----~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~ 75 (254)
++++++|.++|.+|||+|++.|+.++ |+|++++|.+++|+++.....+ ++.++|+.+.+..|.. ....++++.
T Consensus 46 l~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~-~l~igl~g~ 124 (317)
T PRK13387 46 VAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWL-LLVIGLICF 124 (317)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHH
Confidence 57788999999999999998766554 5799999999999999988777 4556666677777744 444456788
Q ss_pred HHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCc----------cchH----HHHHHHHHHHH
Q 025348 76 IVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPL----------EFTK----PLLFAAAFMGI 141 (254)
Q Consensus 76 ~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~----~~~~~~~~~~~ 141 (254)
+.++.||. ||+++||++++|..++.+++..++..++|. |+...+... ..+. +.++..+..++
T Consensus 125 ~~~~~Yt~--gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~ 200 (317)
T PRK13387 125 AIGILYTG--GPLPLSRMPLGEIFSGLTMGFGIFLLAVYI--NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIF 200 (317)
T ss_pred HHhhhhcC--CCcccccCccHHHHHHHHHHHHHHHHHHHH--hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHH
Confidence 89999995 788999999988877666665444344443 332111000 0000 11123455667
Q ss_pred HHHHHHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348 142 FNIAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG 194 (254)
Q Consensus 142 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g 194 (254)
.+...++.||++|+|+|++.|+||+|+++|+|++++++..+...+|+..+...
T Consensus 201 l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v 253 (317)
T PRK13387 201 TIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIV 253 (317)
T ss_pred HHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999888888765443
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=4.8e-28 Score=211.99 Aligned_cols=228 Identities=14% Similarity=0.146 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHhhcccchhhhhcc---------C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchh---HHH
Q 025348 3 PAILMNIFVTAINQLSDVEIDKVN---------K--PHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSP---PLF 68 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~~D~~n---------~--~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~---~~~ 68 (254)
++.++..++|++|||.|+|.|++| | ++||+++|++|++|+..+.+++ .++++.++..++.. ...
T Consensus 49 ~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l--~~i~~~l~~~l~~~~~~~~~ 126 (297)
T PRK12871 49 IGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILL--AAVTSALILTLPYPNSLYVF 126 (297)
T ss_pred HHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 445556778999999999999865 3 3799999999999999999888 66666655544321 122
Q ss_pred HHHHHHHHHHhHhcCCCcccccccc---chhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Q 025348 69 IGLITWWIVGAAYSIDLPLLRWKGS---PLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIA 145 (254)
Q Consensus 69 ~~~~~~~~~~~~Ys~~~pp~~lKr~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (254)
...+.+.++++.|+. .||. |.. .+.+...++.+...+ +. ..| ..+...+....+..+|+.+
T Consensus 127 ~l~~~~~~~~~~Y~~------~kr~~~~p~~-~l~G~~~~~~~~~~g-~~-----~~g---~~~~~~~ll~~~~~~w~~~ 190 (297)
T PRK12871 127 VIMLYSYGIEAFYQV------KKRNQKYPVA-QLLGRTDFTLFPAAG-YL-----CYG---QPDMTALLYMVFFYPWTMA 190 (297)
T ss_pred HHHHHHHHHHHHHhc------ccccccccHH-HHHHHHHHHHHHHHH-HH-----HhC---CCcHHHHHHHHHHHHHHHH
Confidence 223456667788884 2332 321 122222222222222 22 123 2334445555667899999
Q ss_pred HHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 025348 146 IAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTID 225 (254)
Q Consensus 146 ~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d 225 (254)
++++||++|+|||++.|+||+|+++|++++++....+..+..... .+.....++ ..+.....+.+.++.+|.+..+
T Consensus 191 ~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~ 266 (297)
T PRK12871 191 HLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWK 266 (297)
T ss_pred HHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998876554444433322 233334443 2234444566778899999998
Q ss_pred ccchHHHHHHHH--HHHHHHHHHHHhhhh
Q 025348 226 LSDAKSMQSLYM--FIFKLYYAEFFLIHF 252 (254)
Q Consensus 226 ~~~~~~~~~f~~--~~~~~~~~~~~~~~~ 252 (254)
.+|++.|.+-|. +....+|+.=+.+-|
T Consensus 267 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 295 (297)
T PRK12871 267 EKSQDAGMKILPLYHASLVIYAVSIILDF 295 (297)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889998877774 366666655444443
No 36
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=210.42 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHH-HH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWW-IV 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~-~~ 77 (254)
++..++++++|++||++|+|+|++++| +||+|||++|++||+.++..+ ..+|+.+. ...|+....+.. ++. ..
T Consensus 54 lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l--~~~g~~ll~~~~n~~~~~l~~-~~~~~~ 130 (306)
T PRK13362 54 IGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL--GVAGFGLLAAFTNPLAALFAA-FGYVVY 130 (306)
T ss_pred HHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 578899999999999999999998764 799999999999999999888 77777644 345655443432 333 34
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
.+.||. ++||++..+++.+++.++.++.+|+.+ ..| +.+...+++.....+|+...+...+++|+||
T Consensus 131 ~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a-----~~g---~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~D 197 (306)
T PRK13362 131 VGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA-----VTG---QFDAGALILLLMFSLWQMPHSYAIAIFRFND 197 (306)
T ss_pred HHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----HcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 678983 589999999998888877666666654 223 2344555566778899999999999999999
Q ss_pred hHHcCCcccceeechHHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISV 180 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~ 180 (254)
|+++|+||+|+++|+|++++...
T Consensus 198 y~~aG~~~lpv~~G~~~t~~~~~ 220 (306)
T PRK13362 198 YAAAGIPVLPVARGIAKTKLHIV 220 (306)
T ss_pred HHHCCCeeeceecChHHHHHHHH
Confidence 99999999999999998877443
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=2.9e-27 Score=205.87 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=141.3
Q ss_pred ChHHHHHHHHHHHhhcccchh--hhhcc--CCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcch-----hHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVE--IDKVN--KPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRS-----PPLFI 69 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~-----~~~~~ 69 (254)
+++++++|.++|..|||+|.+ .|+.+ .|+|++++|.+++++++.....+ ++.++|+.+.+..++ +++..
T Consensus 34 ~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~ 113 (284)
T TIGR00751 34 LATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIA 113 (284)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence 367899999999999999996 36533 46899999999999999887776 345566666655553 14444
Q ss_pred HHHHHHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHh
Q 025348 70 GLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFV 149 (254)
Q Consensus 70 ~~~~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (254)
.++++.+.++.||. ||+++|+++++|..++.+++..++...+|. |+. .++...++..+..++.+.+++++
T Consensus 114 lg~~~~~~~~~Yt~--gP~~l~y~gLGE~~v~i~~G~l~v~g~~yv--q~~------~~~~~~ll~sl~~g~l~~~il~~ 183 (284)
T TIGR00751 114 LGALCIAAAITYTV--GSKPYGYAGLGDISVLVFFGPLAVLGTQYL--QAH------RVDWVGILPAVATGLLACAVLNI 183 (284)
T ss_pred HHHHHHHHhHhhcC--CCCccccCchHHHHHHHHHHHHHHHHHHHH--hcC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999995 788999999999887766665444333433 332 23444454455667788999999
Q ss_pred cCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhh
Q 025348 150 KDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGA 195 (254)
Q Consensus 150 ~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~ 195 (254)
||++|+|+|+++|+||+|+++|+|++++++..+...+|...+....
T Consensus 184 Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~ 229 (284)
T TIGR00751 184 NNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML 229 (284)
T ss_pred cCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888876655433
No 38
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.96 E-value=8.2e-28 Score=206.48 Aligned_cols=162 Identities=33% Similarity=0.539 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHhhcccchhhhhc--cCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKV--NKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~--n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++.++.+.++|..||+.|+|+|+. |+|+||+++|+++++++...+..+ .++++.+++..++..+.+. .+..+.++
T Consensus 30 l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~--~~l~l~l~~~~~~~~~~~~-~~~~~~~~ 106 (257)
T PF01040_consen 30 LAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALIL--LLLGLLLALLLGPWFLLIL-LLGFLLGL 106 (257)
T ss_pred HHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHH--HHHHHHHHHhcCchhHHHH-HHHHHHHH
Confidence 456789999999999999999999 889999999999999999988888 7888887777776665554 45666779
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
.|| ||+|+||++..+++..+..++.....+++. .++ ..+.+.........++.......+|++|+|+|+
T Consensus 107 ~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~ 175 (257)
T PF01040_consen 107 LYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGG--DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDR 175 (257)
T ss_pred HHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999 677899999988877766666444444432 121 112333333444466777888888999999999
Q ss_pred HcCCcccceeechHHHHH
Q 025348 160 EFGLRTLPVILGKEKVFS 177 (254)
Q Consensus 160 ~~G~~Tl~v~~G~~~~~~ 177 (254)
+.|+||+|+++|+++++.
T Consensus 176 ~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 176 KAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HcCCcchHHHHHHHHHHH
Confidence 999999999999999987
No 39
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=4.8e-27 Score=205.47 Aligned_cols=178 Identities=26% Similarity=0.319 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHH-HhcchhHHHHHHHHHHHHH
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMG-IMLRSPPLFIGLITWWIVG 78 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~-~~~~~~~~~~~~~~~~~~~ 78 (254)
+++++.+.++|++||+.|+|+|+.|+|+||.+++ +++......+ ++..++..+. ...|+..+... +++.+++
T Consensus 43 ~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~ 117 (285)
T PRK12872 43 LITFLIAAAVYIINYLTDLEEDIINKPERVVFSE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILG 117 (285)
T ss_pred HHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHH
Confidence 5788999999999999999999999999998854 4444433333 1244444432 33465554443 5677789
Q ss_pred hHhcCCCccc-cccccchhHHHHHHHHHHHH-hhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348 79 AAYSIDLPLL-RWKGSPLMAAVTIMILNGLL-LQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE 156 (254)
Q Consensus 79 ~~Ys~~~pp~-~lKr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e 156 (254)
+.||. ||. ++||.|..++...+..|+.. +..|++. + +. ..+.+.+......+++++..+.++|++|+|
T Consensus 118 ~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~--~----~~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e 187 (285)
T PRK12872 118 ILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYY--Y----QL--TIFSLLLLYAVFIFLKSFIREIVFDIKDIE 187 (285)
T ss_pred HHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh--c----cc--ccchHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 99995 433 68999988887766666643 3333332 1 11 123334444455667788899999999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348 157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG 194 (254)
Q Consensus 157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g 194 (254)
+|++.|+||+|+++|+|+++++...+..+++...+...
T Consensus 188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~ 225 (285)
T PRK12872 188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGV 225 (285)
T ss_pred hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888777665443
No 40
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=2.1e-26 Score=199.93 Aligned_cols=174 Identities=22% Similarity=0.246 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY 81 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y 81 (254)
+++.+...++|++||++|+|+|++|+|+||.+ +++.+..+..+. .++|+.+++..|.. + + .+++.+.++.|
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la--~llGl~La~~~g~~-l-l-~ll~~l~g~lY 135 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLA--FLLGTYILAMDGML-L-L-AFLPFITGYLY 135 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHH--HHHHHHHHHHHhHH-H-H-HHHHHHHHHHh
Confidence 45678899999999999999999999999987 788888888777 88888888887743 2 3 35677789999
Q ss_pred cCC--Cc--cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 82 SID--LP--LLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 82 s~~--~p--p~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
|.+ .+ |.|+|+.+..+++..+..+|.....+ . +.... .. .+.....++.....++++.+||++|+|+
T Consensus 136 S~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~--~----g~~~~--~~-~~~~~i~l~~~~~l~~~~iindirDiEG 206 (307)
T PRK13591 136 SKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGI--A----GSYCG--SL-IPVGLIFLFFGVKLFINSCVYDFKDVKG 206 (307)
T ss_pred cCCCCCCCccccccCCCchhHHHHHHHHHHHHHHH--H----Hhhhh--hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 975 22 34889988888877777776422111 1 00000 00 1111112222223466778999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILT 193 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~ 193 (254)
|++.|+||+|+++|+++++++...+..++++..+..
T Consensus 207 Dr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~ 242 (307)
T PRK13591 207 DTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIA 242 (307)
T ss_pred HHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888766443
No 41
>PLN02776 prenyltransferase
Probab=99.95 E-value=6.5e-26 Score=200.12 Aligned_cols=223 Identities=14% Similarity=0.076 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHH-
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVA-MGIMLRSPPLFIGLITWWIV- 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~-l~~~~~~~~~~~~~~~~~~~- 77 (254)
+|+.++++++|++||++|+|+|++|+| +||+|+|++|+++|+.+++.+ .++|+. +++..|+.+..++ +.+.++
T Consensus 36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l--~~~g~~~l~~~~n~l~~~l~-~~~~~ly 112 (341)
T PLN02776 36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVV--GAAGVALLAYKTNMLTAGLG-AGNILLY 112 (341)
T ss_pred HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 688999999999999999999999876 799999999999999999988 777774 4556787766654 344443
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
...||. +||++.+....++..++....+||.+ +.| +.+.+.++++....+|+....+...++|+||
T Consensus 113 ~~vYt~------lKR~t~~~~~lG~~~Ga~ppL~Gw~A-----vtg---~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dD 178 (341)
T PLN02776 113 AFVYTP------LKQIHPANTWVGAVVGAIPPLMGWAA-----ASG---QLDAGAMVLAAALYFWQMPHFMALAYMCRDD 178 (341)
T ss_pred HHHHHh------HccCCchhHHHHHHHHHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 557983 89999887766666665555566543 333 2445566667778899998888888999999
Q ss_pred hHHcCCcccceee--chHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-hHHHHH
Q 025348 158 DKEFGLRTLPVIL--GKEKVFSISVSMLLMAYGAAILTGASSPFLLCKLVTMIGHSVLGFILWHQTRTIDLSD-AKSMQS 234 (254)
Q Consensus 158 D~~~G~~Tl~v~~--G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~ 234 (254)
|+++|++++|+.- |+++++.+....+.+....++..+... .++ .++..+..+....+.++++..+.+| +...+.
T Consensus 179 y~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~ 255 (341)
T PLN02776 179 YAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNANARKM 255 (341)
T ss_pred HHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999976 455555544333333222222211111 111 2344555555666777776665444 445556
Q ss_pred HHHHHHHHHH
Q 025348 235 LYMFIFKLYY 244 (254)
Q Consensus 235 f~~~~~~~~~ 244 (254)
|+.+++.+..
T Consensus 256 F~~Sl~yL~~ 265 (341)
T PLN02776 256 FHGSLLYLPA 265 (341)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 42
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=3.1e-25 Score=194.49 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=140.5
Q ss_pred ChHHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWI 76 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~ 76 (254)
+++++++|.++|.+|||+|++ .|+. +++ ...++..+++++......+ ++.++|+.+.+..|+ +++..++++.+
T Consensus 54 ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~-~~l~ig~~g~~ 130 (304)
T PRK07419 54 LLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW-TVLGLVLLCCF 130 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHH
Confidence 368899999999999999998 6774 232 2445555789988877766 445556666666664 44444567888
Q ss_pred HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348 77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE 156 (254)
Q Consensus 77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e 156 (254)
.++.||. ||+++||++++|..++.+++..++...+|. |+. +++...+...+..++.+.+..++||++|+|
T Consensus 131 ~~~~YT~--gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv--~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e 200 (304)
T PRK07419 131 LGYLYQG--PPFRLGYQGLGEPLCFLAFGPLAVAAALYS--QTP------SWSLIPLAASIILGLATSLILFCSHFHQVE 200 (304)
T ss_pred HhheccC--CCcccCCCCchHHHHHHHHHHHHHHHHHHH--hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 9999994 889999999999887766665544444443 332 234455555666778899999999999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348 157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL 201 (254)
Q Consensus 157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 201 (254)
+|++.|+||+|+++|+|++++++..+...+|...+........+|
T Consensus 201 ~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~ 245 (304)
T PRK07419 201 DDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPW 245 (304)
T ss_pred hHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999988888887655443333444
No 43
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=4.1e-25 Score=191.53 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHh----hcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHH-HHHHHHHhcchhHHHHHHHHH
Q 025348 2 VPAILMNIFVTAI----NQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTL-QSVAMGIMLRSPPLFIGLITW 74 (254)
Q Consensus 2 ~~~~l~~~a~~~~----Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~-l~l~l~~~~~~~~~~~~~~~~ 74 (254)
+.++++|...|.. |||+|+|.|+.|+|++.. .|.++++|+....... ++.+ .++.+....++. ......++
T Consensus 37 ~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~l~~~a 114 (282)
T PRK13105 37 VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWA-SGLVLAVS 114 (282)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence 4566677777666 999999999999875432 5889999985554444 1122 333333333433 33334578
Q ss_pred HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
++.++.||. ||.|+|+++++++++..+........|.+. . ++ ..+.+.+.....+.+|+.+++.+||+||
T Consensus 115 i~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~-~~--~~~~~~~l~~~~~~~~~~a~~ii~~irD 184 (282)
T PRK13105 115 VFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVL-----A-GA--PFTAALWAVLAAFFLWGMASHAFGAVQD 184 (282)
T ss_pred HHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHH-----h-hc--cccHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 888999994 788999999999854333222112233222 1 22 1334445555667889999999999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTG 194 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g 194 (254)
+|+||+.|+||+|+++|+|++.+++..++.+++++.+..+
T Consensus 185 ie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 185 VVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred hHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888776444
No 44
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=6.3e-25 Score=191.29 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=137.6
Q ss_pred ChHHHHHHHHHHHhhcccchhh--hhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVEI--DKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWI 76 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~~--D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~ 76 (254)
+++++++|.++|.+|||+|.+. |+.+. ....++..+++++......+ ++...|+.+.+..+ ++++..+.++.+
T Consensus 41 li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~ 117 (285)
T TIGR02235 41 LIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCF 117 (285)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 3688999999999999999984 76432 12223334678887766665 34555566666555 444444567888
Q ss_pred HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChh
Q 025348 77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVE 156 (254)
Q Consensus 77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e 156 (254)
.++.||. ||+++||++++|..++.+++..++...+|. |+. ++++..+...+..++.+.+..+.||+||+|
T Consensus 118 ~~~~Yt~--gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv--qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e 187 (285)
T TIGR02235 118 LGYLYQG--PPFRLGYQGLGEPICWLCFGPLAIAAALYA--QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVE 187 (285)
T ss_pred HHHhhcC--CCcccCCCCccHHHHHHHHHHHHHHHHHHH--hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 9999994 889999999999887766665544444443 332 244555555667788899999999999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 025348 157 GDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPFLL 201 (254)
Q Consensus 157 ~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 201 (254)
+|++.|+||+|+++|+|++++++..+...+|+..+........+|
T Consensus 188 ~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~ 232 (285)
T TIGR02235 188 DDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW 232 (285)
T ss_pred hHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999998888887654433333334
No 45
>PLN02922 prenyltransferase
Probab=99.94 E-value=2.5e-24 Score=189.76 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=134.2
Q ss_pred ChHHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHHH-HHHHHHHHH-HhcchhHHHHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVIST-MTLQSVAMG-IMLRSPPLFIGLITWWI 76 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~-a~~l~l~l~-~~~~~~~~~~~~~~~~~ 76 (254)
+++++++|.++|.+|||+|++ .|+.++..+.-..| |+++++..+..+. ..++|.++. ...+.+.++..++++.+
T Consensus 57 ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~ 134 (315)
T PLN02922 57 LLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAIL 134 (315)
T ss_pred HHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 468999999999999999998 57643322222234 9999988877771 112333333 21122445454567889
Q ss_pred HHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHHHHHHHHhcCC
Q 025348 77 VGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRP----LEFTKPLLFAAAFMGIFNIAIAFVKDL 152 (254)
Q Consensus 77 ~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (254)
.++.||. ||+++||++++|..++.+++..++ .+.|.. |+...+.. ...+...+...+..++++.+.+++||+
T Consensus 135 ~~~~Yt~--gP~pl~y~gLGE~~v~i~fG~l~v-~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~ 210 (315)
T PLN02922 135 CGYVYQC--PPFRLSYKGLGEPLCFAAFGPLAT-TAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHF 210 (315)
T ss_pred HHHHHhc--CCcccccCcchHHHHHHHHHHHHH-HHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999995 889999999999887666554444 444431 33211110 012344555667788899999999999
Q ss_pred CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhh
Q 025348 153 PDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGAS 196 (254)
Q Consensus 153 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~ 196 (254)
||+|+|++.|+||+|+++|+|++++++..+...+|...+.....
T Consensus 211 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 254 (315)
T PLN02922 211 HQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLL 254 (315)
T ss_pred cchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888876555433
No 46
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.93 E-value=7.4e-24 Score=182.33 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=138.9
Q ss_pred ChHHHHHHHHHHHhhcccchh--hhhc----cCCCCccccCccCHHHHHHHHHHHH--HHHHHHHHHHhcchhHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVE--IDKV----NKPHLPLASGDFSIGEGVAIAVIST--MTLQSVAMGIMLRSPPLFIGLI 72 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~--~D~~----n~~~Rpl~sG~ls~~~a~~~~~~~~--a~~l~l~l~~~~~~~~~~~~~~ 72 (254)
++++++++..+|..|||.|.+ .|.+ .+.++-+...+++++..+...+.+. +.++++.+....++. ++..+.
T Consensus 50 Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~-~l~lG~ 128 (303)
T COG1575 50 LIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWL-VLLLGL 128 (303)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHH
Confidence 468999999999999999998 5653 2224566677788888877766661 233444444555544 455557
Q ss_pred HHHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCC
Q 025348 73 TWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDL 152 (254)
Q Consensus 73 ~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (254)
++.+.++.||. +|++++|.|++|..++.+++...+...+|. |+. ..++..+...+.+++.+......||+
T Consensus 129 l~~~~g~~YTg--Gp~PlgY~gLGEi~~~vffG~l~v~g~~yi--qt~------~~~~~~ll~slp~gil~~~Il~aNNi 198 (303)
T COG1575 129 LCIAAGILYTG--GPFPLGYMGLGEIFVGVFFGPLIVLGAYYI--QTG------RLSWAILLPSLPVGILIANILLANNL 198 (303)
T ss_pred HHHHheeeecc--CCcCcccCCHHHHHHHHHHHHHHHHHHHHH--hcc------cchHHHHHHHHHHHHHHHHHHHhccc
Confidence 88899999996 567799999999998888887666666665 432 23444555566777888999999999
Q ss_pred CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 025348 153 PDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILT 193 (254)
Q Consensus 153 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~ 193 (254)
||+|+|+|.||+|+|+++|+|+++.+...++..+|++.+..
T Consensus 199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~ 239 (303)
T COG1575 199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF 239 (303)
T ss_pred ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888876543
No 47
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=3.4e-24 Score=184.56 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHh-
Q 025348 3 PAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAY- 81 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Y- 81 (254)
..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+ .++++.++... ... +...+..+.|
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L--~~~~l~L~~l~-----~i~-i~~~~i~~lY~ 125 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFI--VAVSVLLNVLF-----MNN-VGWFLFLYIYG 125 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHH--HHHHHHHHHHH-----HHH-HHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999988887 66665554332 111 1233345566
Q ss_pred ----cCCCccccccccchhHHHHHHHHHHHHhhhH--HHHH-HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 82 ----SIDLPLLRWKGSPLMAAVTIMILNGLLLQFP--YFVH-VQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 82 ----s~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
+. ++|+.++.+|+..+...+..+..+ ++.. ......|.+ ......+.+.+...+...++++.+|++|
T Consensus 126 ~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD 199 (299)
T PRK13592 126 TLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA 199 (299)
T ss_pred HHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 64 689999999876665544333222 2211 001112211 1111112223334456889999999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHH
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGA 189 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~ 189 (254)
|||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus 200 -~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 200 -PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred -Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence 88886 5999999999999988887776555443
No 48
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=5.8e-23 Score=178.49 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=108.0
Q ss_pred HHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHHHHHHHHHHhHhcCCCc
Q 025348 9 IFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLP 86 (254)
Q Consensus 9 ~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~p 86 (254)
.+.|.+||++|+|+||.|+|++. |+...++........ ++..+++.+....++..... .+...+..+.|| .|
T Consensus 59 l~~y~iND~~D~D~Dr~~prk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~p 132 (282)
T PRK12875 59 VFLYGVNDVFDADTDELNPKKDR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--AP 132 (282)
T ss_pred HHHhcchhhhhhhccccCCCccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CC
Confidence 34455899999999999988654 222222222111111 11344444444434332222 244667789999 48
Q ss_pred cccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhHHcCCccc
Q 025348 87 LLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDKEFGLRTL 166 (254)
Q Consensus 87 p~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl 166 (254)
|+|+|++|..+..+++... ..+..+++. + .| +.+... +.+...+|+.+.+++||+||+|+|++.|+||+
T Consensus 133 P~rlk~~p~~~~~~~g~~~-~~~~~~y~~--~---tg---~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tl 201 (282)
T PRK12875 133 PLRFKTTPVLDSLSNGLYI-LPGVAAYAL--V---SG---SLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTT 201 (282)
T ss_pred CccchhccHHHHHHHHHHH-HHHHHHHHH--H---cC---CCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccc
Confidence 8999999998875433221 222223322 1 22 122222 23334689999999999999999999999999
Q ss_pred ceeechHHHHHHHHHHHHHHHHHHHHHh
Q 025348 167 PVILGKEKVFSISVSMLLMAYGAAILTG 194 (254)
Q Consensus 167 ~v~~G~~~~~~~~~~~~~~~~~~~~~~g 194 (254)
|+++|+|++++++..++.++.......+
T Consensus 202 av~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 202 ATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred hhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888877777665554
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-22 Score=173.19 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHH-H
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWWI-V 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~~-~ 77 (254)
+|..+..+++|++|+++|+|+|++.+| +||+++|+++++|++.++.++ .++|..+. +..|+.+..+. +.+++ =
T Consensus 59 ~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L--~~~g~~~l~~~vn~laa~l~-~~gi~~Y 135 (304)
T COG0109 59 LGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVL--GVAGFSLLWFLVNLLAAVLG-LFGIFFY 135 (304)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 677889999999999999999999988 699999999999999999999 88888766 56676555443 33443 3
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
.++||. .+||++....+.+++.|+.+..+||.+ +.| +.+...+.+.+.+++|+-..-..-+++=+||
T Consensus 136 v~vYT~-----~lKR~T~~NiviGg~aGa~PpliGwaA-----vtg---~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D 202 (304)
T COG0109 136 VVVYTL-----WLKRRTPQNIVIGGFAGAMPPLIGWAA-----VTG---SISLGAILLFAIIFLWTPPHFWALALKYKDD 202 (304)
T ss_pred hhhhhh-----hccCCcccceeeeeccccccccceeee-----eeC---CCCchHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 568995 689999998888888887777777643 333 2344555566667778766555556777889
Q ss_pred hHHcCCcccceeechHHHHHHH
Q 025348 158 DKEFGLRTLPVILGKEKVFSIS 179 (254)
Q Consensus 158 D~~~G~~Tl~v~~G~~~~~~~~ 179 (254)
.+++|+..+|++-|++.+++-.
T Consensus 203 Y~~AgiPMlPvv~G~~~t~~~I 224 (304)
T COG0109 203 YKAAGIPMLPVVKGERRTKRQI 224 (304)
T ss_pred HHHcCCCcccccccHHHHHHHH
Confidence 9999999999999999987744
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.75 E-value=3e-16 Score=137.13 Aligned_cols=97 Identities=26% Similarity=0.358 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++..++++++|++||++|+|+||+| ||+||++||++|+++|..+..++ .++|+.+++.+|+...... ....+..+
T Consensus 53 l~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l--~~~~l~la~~l~~~~~~~~-~~~~~~~~ 129 (295)
T PRK12324 53 VLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL--LVASLALAYLLSPKLALVL-LVYLVLNL 129 (295)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456788999999999999999997 67899999999999999998888 7778877777776554443 45666778
Q ss_pred HhcCCCccccccccchhHHHHHHHHHH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNG 106 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~ 106 (254)
.||. ++||++..++++.++.++
T Consensus 130 ~Ys~-----~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 130 AYSF-----KLKHQPVLDVFCIASGFV 151 (295)
T ss_pred HhhH-----HhcCCchhhHHHHHHHHH
Confidence 9995 689999998877665554
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.69 E-value=2.6e-15 Score=139.48 Aligned_cols=143 Identities=27% Similarity=0.356 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhhcccchhhhhcc--CCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVN--KPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGA 79 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++..++++++|++||+.|+|+||+| ||+||++||++|+++|+.+..++ .++|+.+++.+|+..+ ...+..++...
T Consensus 233 ~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l--~~~~~~l~~~l~~~~~-~~~~~~~~~~~ 309 (479)
T PRK08238 233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL--LLAGLALALALGPAFL-LVLLAYLALTL 309 (479)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 4667899999999999999999999 56899999999999999999988 8888888887786433 33345666778
Q ss_pred HhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhhhH
Q 025348 80 AYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEGDK 159 (254)
Q Consensus 80 ~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~D~ 159 (254)
+||. ++||++..++++.++.++.-+..|+.. .+ .+.+.+++ ++..+........+...|.++++
T Consensus 310 ~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~ 373 (479)
T PRK08238 310 AYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IG----VALSFWLL-AFSMFFFLSLALVKRYTELRRAL 373 (479)
T ss_pred HhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hc----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 9994 699999999877666554333333321 12 12233322 22233455567788888888888
Q ss_pred HcCC
Q 025348 160 EFGL 163 (254)
Q Consensus 160 ~~G~ 163 (254)
..|.
T Consensus 374 ~~~~ 377 (479)
T PRK08238 374 QRGK 377 (479)
T ss_pred hcCC
Confidence 8775
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.33 E-value=3.5e-13 Score=111.00 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhhcccchh--hhhccCCCCccccCccCHHHHHHHHHHHHHHHHHH---HHHHhcchh---HHHHHHHHH
Q 025348 3 PAILMNIFVTAINQLSDVE--IDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSV---AMGIMLRSP---PLFIGLITW 74 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~--~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l---~l~~~~~~~---~~~~~~~~~ 74 (254)
+.+.++.++|.+|.|+|.. +|++...+|.++...+++++...+...+ ...|. .+...++|. .+.+..+.+
T Consensus 107 avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~l--y~~gc~~~~~l~~lsp~klehlaliyfgg 184 (359)
T KOG4581|consen 107 AVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFL--YMAGCGCAACLAVLSPAKLEHLALIYFGG 184 (359)
T ss_pred hheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHH--HHhcchHHHHHHhCCHhhhhhhhhhhccC
Confidence 3455788999999999986 7887777999999999999999988877 44443 333344432 233333345
Q ss_pred HHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 025348 75 WIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPD 154 (254)
Q Consensus 75 ~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 154 (254)
+--.++|+.+. .+|+..+++.++...++...+...+. .|++... + .|.. -.+...+-+-++.+.|+.+|
T Consensus 185 ls~sflytggi---gfkyialgdliili~fgpiavlfaf~--~q~g~l~----~-~~l~-yaiplalnteailhsnntrd 253 (359)
T KOG4581|consen 185 LSGSFLYTGGI---GFKYIALGDLIILILFGPIAVLFAFA--IQTGHLA----I-FPLG-YAIPLALNTEAILHSNNTRD 253 (359)
T ss_pred cccceeEeccc---ceEEEeccCEEEEEeechHHHHHHHH--HhcCcee----E-Eeeh-heeeeccchHHHhccCCCcc
Confidence 55567899863 57888776643322333322222221 1332111 1 0111 11122344667788999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 025348 155 VEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAAILTGASSPF 199 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 199 (254)
.|.||++|+-|+++.+|+..+-.++..++...|....+.+..+..
T Consensus 254 ~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si 298 (359)
T KOG4581|consen 254 ADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI 298 (359)
T ss_pred cccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888887666655543
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.25 E-value=2.1e-11 Score=105.05 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHH-
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKP--HLPLASGDFSIGEGVAIAVISTMTLQSVAMG-IMLRSPPLFIGLITWWIV- 77 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~-~~~~~~~~~~~~~~~~~~- 77 (254)
+|+.+..++.|++||+.+.+.|++.+| .||+++|++++.+|..+..+. ...|+.+. +-.|+....+. ...+++
T Consensus 134 vGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~--g~~G~slL~~gvNpl~a~Lg-a~Ni~LY 210 (409)
T KOG1380|consen 134 VGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLT--GTAGVSLLAFGVNPLAAALG-AGNIFLY 210 (409)
T ss_pred hhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHh--ccccceeeeecccHHHHHHh-hcchhee
Confidence 467889999999999999999999987 699999999999999998877 66666444 33676544332 223322
Q ss_pred HhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHhcCCCChhh
Q 025348 78 GAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAFVKDLPDVEG 157 (254)
Q Consensus 78 ~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~e~ 157 (254)
..+|+ .+||.-.....+++..++++..+||-. ..| ..+...+++......|.+-.-..-...=++|
T Consensus 211 ~~vYT------PlKrihiinTWvGavVGAIPPLMGwAA-----asg---~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~D 276 (409)
T KOG1380|consen 211 AGVYT------PLKRIHIINTWVGAVVGAIPPLMGWAA-----ASG---LLDPGAMILAGILYAWQFPHFNALSWNLRND 276 (409)
T ss_pred ecccc------chhhhhhhhhHHHHHhccCCccchhhh-----hcc---CCCccHHHHHHHHHHhcccchhhhhhhhchh
Confidence 34566 289987776666776666666677643 122 1223334444455567653322223333467
Q ss_pred hHHcCCcccceeec---hHHHHHHHHHHHHHH
Q 025348 158 DKEFGLRTLPVILG---KEKVFSISVSMLLMA 186 (254)
Q Consensus 158 D~~~G~~Tl~v~~G---~~~~~~~~~~~~~~~ 186 (254)
.++.|.+.+++.=. ++.+.+....++.++
T Consensus 277 Ys~~GY~Mma~~np~l~rr~alr~s~a~~~L~ 308 (409)
T KOG1380|consen 277 YSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS 308 (409)
T ss_pred hhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence 88999999988753 333444444444444
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=92.47 E-value=0.41 Score=42.11 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcccchhhhhccCCC
Q 025348 3 PAILMNIFVTAINQLSDVEIDKVNKPH 29 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~~D~~n~~~ 29 (254)
++.+..+..+..|+..|.|+|++|.|+
T Consensus 184 p~gil~~~Il~aNNirDie~D~~~gk~ 210 (303)
T COG1575 184 PVGILIANILLANNLRDIEEDIRNGKY 210 (303)
T ss_pred HHHHHHHHHHHhcccccchhHHhcCCc
Confidence 455677888999999999999999874
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=90.63 E-value=0.98 Score=39.97 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=36.5
Q ss_pred HhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH-H----HHHHHHHHHHh-cchhHHHHHHHHHHHHHhHhcC
Q 025348 13 AINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS-T----MTLQSVAMGIM-LRSPPLFIGLITWWIVGAAYSI 83 (254)
Q Consensus 13 ~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~-~----a~~l~l~l~~~-~~~~~~~~~~~~~~~~~~~Ys~ 83 (254)
.+||+-|.|.|+.+.+ +-|+.=|+ +.+..+...+ + ..+++..+... ..|...+.+.+.+++....|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 6899999999998754 66655443 3333332222 1 11112222221 1233333345567777788986
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.27 E-value=1.5 Score=39.09 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
+..+.....||+-|.|+|+.+.+ +-|. ++.++.+......+
T Consensus 200 ~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l 241 (317)
T PRK13387 200 FTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAIL 241 (317)
T ss_pred HHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHH
Confidence 45566688999999999998865 4443 34455555544433
No 57
>PLN02922 prenyltransferase
Probab=89.05 E-value=1.9 Score=38.45 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHH
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVI 48 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~ 48 (254)
-+..+.....||+-|+|+|+++.+ +-|. ++.++.+......
T Consensus 198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~ 239 (315)
T PLN02922 198 GLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHH
Confidence 355677889999999999999865 4443 3445555544333
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.94 E-value=1.9 Score=38.14 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAV 47 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~ 47 (254)
+........||+-|+|+|+++.+ +-|. ++.++.+.....
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~ 224 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP 224 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence 45567778999999999998865 4443 334445544433
No 59
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.66 E-value=2.3 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNK-PHLPLASGD 36 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 36 (254)
++....-+.+||.-|+|.|+++. |+-|..-|+
T Consensus 171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 34556667899999999999754 466655554
No 60
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=88.37 E-value=4.5 Score=35.75 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCChhhhHHcCCcccceee---chHHHHHHHHHHH
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFGLRTLPVIL---GKEKVFSISVSML 183 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~---G~~~~~~~~~~~~ 183 (254)
.+...+...+||+.|.|.|++.++ +=|+.- ..+.+......+.
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~ 109 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF 109 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence 445667788999999999987763 334433 4444444443333
No 61
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=87.95 E-value=3.9 Score=35.47 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCCcccceeech
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVILGK 172 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 172 (254)
..+...+...+||+.|.|.|++. +++=|..-|+
T Consensus 46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 33445667789999999999988 6777777774
No 62
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=86.75 E-value=12 Score=32.75 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC-cccceeec
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILG 171 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G 171 (254)
..+...+...+||+.|+|-|++.-+ |.=|..=|
T Consensus 56 ~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence 3445666778999999999998876 34444444
No 63
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=85.51 E-value=13 Score=32.43 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcccchhhhhcc-CCCCccccCccCHHHHHHHHHHH
Q 025348 3 PAILMNIFVTAINQLSDVEIDKVN-KPHLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
+..+...+...+|++-|+|.|++. +++-|. ++.++.+..+...+
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~ 217 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAAC 217 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHH
Confidence 455667777899999999999865 444443 34455555554444
No 64
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.79 E-value=4.4 Score=36.34 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVNK-PHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 36 (254)
..+...+...+||..|+|.|+... ++-|+.=|+
T Consensus 189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 445566777899999999998764 455654443
No 65
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=84.56 E-value=19 Score=31.92 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.4
Q ss_pred HhcCCCChhhhHHcCCcccceeech
Q 025348 148 FVKDLPDVEGDKEFGLRTLPVILGK 172 (254)
Q Consensus 148 ~~~~~~D~e~D~~~G~~Tl~v~~G~ 172 (254)
.+||+.|+|-|+. ++++-|+.=|+
T Consensus 71 ~iNd~~D~~iD~i-nkp~rPiasG~ 94 (308)
T PRK12887 71 GLNQLTDIEIDRI-NKPHLPLAAGE 94 (308)
T ss_pred HHhhhhhHHHHhc-CCCCCCcCCcc
Confidence 3999999999995 55777765554
No 66
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=84.49 E-value=4.6 Score=35.41 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
+...+....||.-|+|+|+.+.+ +-|. ++.++.+......+
T Consensus 172 l~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l 213 (285)
T TIGR02235 172 LATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWV 213 (285)
T ss_pred HHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHH
Confidence 45677788999999999998755 4443 34455555544443
No 67
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=83.95 E-value=5.8 Score=34.67 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
.+........||+-|.|.|+++.+ +-|.- +.++.+......+
T Consensus 178 ~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~---lG~~~a~~~~~~l 220 (293)
T PRK06080 178 GLLIGAVLLANNIRDIETDRENGKNTLAVR---LGDKNARRLHAAL 220 (293)
T ss_pred HHHHHHHHHhcCCCcchhHHHcCCeeEEee---ECcHhHHHHHHHH
Confidence 445667778999999999997754 44433 3344444444333
No 68
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=83.86 E-value=7.1 Score=34.42 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCChhhhHHc
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEF 161 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~ 161 (254)
++...+...+||+.|+|.|++.
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~ 77 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLH 77 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccC
Confidence 3445566789999999999986
No 69
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=83.86 E-value=5.9 Score=34.67 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
+...+...+|++-|.|.||++.. +-| -++.++.+..+...+
T Consensus 171 ~~~~a~~ii~~irDie~Dr~~G~~Tlp---v~lG~~~a~~~~~~l 212 (282)
T PRK13105 171 LWGMASHAFGAVQDVVADREAGIASIA---TVLGARRTVRLAVGL 212 (282)
T ss_pred HHHHHHHHHHhCcchHhHHHcCCccch---HHhcHHHHHHHHHHH
Confidence 34677789999999999997643 444 345667777766665
No 70
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=83.72 E-value=9.1 Score=32.20 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCChhhhHHc-CCcccceeechHH
Q 025348 141 IFNIAIAFVKDLPDVEGDKEF-GLRTLPVILGKEK 174 (254)
Q Consensus 141 ~~~~~~~~~~~~~D~e~D~~~-G~~Tl~v~~G~~~ 174 (254)
+........||+.|.|.|+.. +++.-|..-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 445667889999999999996 3445555544443
No 71
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=83.07 E-value=6.7 Score=34.44 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCChhhhHHcCC-cccceeech
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILGK 172 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~ 172 (254)
.+...+-..+||+.|+|-|++..| |+=|..=|+
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 344566678999999999998765 466766664
No 72
>PLN00012 chlorophyll synthetase; Provisional
Probab=82.55 E-value=7.1 Score=35.64 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 6 LMNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
+...+....||+-|+|.|++. +|.-|+.-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 455667889999999999865 5677766664
No 73
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=82.16 E-value=8.2 Score=34.24 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=22.1
Q ss_pred HHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 7 MNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 7 ~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
...+....||+.|+|.|++. +|+-|+.-|+
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 34455789999999999876 5566765554
No 74
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=81.80 E-value=8.3 Score=33.60 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
.++-+..-...|++.|+|.|++. .|.-|+.-|+
T Consensus 169 ~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 169 NILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 34445566678999999999865 5677776664
No 75
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=81.64 E-value=11 Score=32.65 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCCccccee---echHHHHHHHHHH
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVI---LGKEKVFSISVSM 182 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---~G~~~~~~~~~~~ 182 (254)
..+...+-..+||+.|+|-|++.. ++=|.. +.++.+......+
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l 91 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL 91 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence 344566778899999999999753 444443 3445454444333
No 76
>PRK13592 ubiA prenyltransferase; Provisional
Probab=80.40 E-value=20 Score=31.59 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCCccccee---echHHHHHHHHHH
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGLRTLPVI---LGKEKVFSISVSM 182 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---~G~~~~~~~~~~~ 182 (254)
.++.+..-..+||+.|+|-|+. ++..=|+- ...|.++.....+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence 3344566788999999999964 45555543 3455555544333
No 77
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=80.33 E-value=9.3 Score=33.22 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348 7 MNIFVTAINQLSDVEIDKVNK-PHLPLASGD 36 (254)
Q Consensus 7 ~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 36 (254)
...+....||+.|.|.|+++. ++-|..=|+
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 344567899999999999764 456655444
No 78
>PRK13595 ubiA prenyltransferase; Provisional
Probab=79.73 E-value=23 Score=31.20 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCChhhhHHcCCcccce---eechHHHHHH
Q 025348 142 FNIAIAFVKDLPDVEGDKEFGLRTLPV---ILGKEKVFSI 178 (254)
Q Consensus 142 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~~G~~~~~~~ 178 (254)
.......+||+-|+|-|++.-+| =++ ++.++.++.+
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~ 97 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPL 97 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHH
Confidence 34566789999999999866543 343 3344444443
No 79
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=79.62 E-value=8.3 Score=33.76 Aligned_cols=41 Identities=20% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcccchhhhhccCC-CCccccCccCHHHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP-HLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
+...+....||.-|.|+|+++.+ +-| -++.++.+......+
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~---v~lG~~~a~~l~~~l 216 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLA---VRLGDARTRMYHQGL 216 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeeh---hhcchHhHHHHHHHH
Confidence 44567778999999999998755 444 334455555544333
No 80
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=79.39 E-value=8.9 Score=33.36 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
.++-+..-..+||..|+|.|++. .|.-|+.-|+
T Consensus 167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 34445566789999999999765 4567766663
No 81
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.99 E-value=11 Score=32.79 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcccchhhhhccC-CCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVNK-PHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ 36 (254)
.++.+..-...|++.|+|.|+++. |.-|+.-|+
T Consensus 174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 344555556889999999998764 466665564
No 82
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=77.89 E-value=12 Score=32.33 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCChhhhHHcCCcccceeec---hHHHHHHHHHH
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFGLRTLPVILG---KEKVFSISVSM 182 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G---~~~~~~~~~~~ 182 (254)
.+...+-..+||+.|+|-|++. +++=|..-| ++.+......+
T Consensus 48 ~l~~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~is~~~a~~~~~~l 92 (276)
T PRK12882 48 FLATGAGNAINDYFDREIDRIN-RPDRPIPSGAVSPRGALAFSILL 92 (276)
T ss_pred HHHHHHHHHHHHHhhhcccccc-CCCCCcCCCCcCHHHHHHHHHHH
Confidence 3445666789999999999964 355565555 44444443333
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.80 E-value=15 Score=32.14 Aligned_cols=32 Identities=22% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCChhhhHHcCCc-ccceeech
Q 025348 141 IFNIAIAFVKDLPDVEGDKEFGLR-TLPVILGK 172 (254)
Q Consensus 141 ~~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~~G~ 172 (254)
+...+-..+||+.|+|-|++..+. .=|..=|+
T Consensus 57 ~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 57 ATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 345666789999999999875543 34444443
No 84
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=75.79 E-value=18 Score=31.52 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL 163 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~ 163 (254)
..+...+-..+||+.|+|-|++..|
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~R 69 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSR 69 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCC
Confidence 3344667788999999999998654
No 85
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=73.62 E-value=17 Score=31.98 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcccchhhhhcc-CCCCccccCcc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGDF 37 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~l 37 (254)
.++.+..-...||+.|+|.|+++ .|.-|+.-|+-
T Consensus 184 ~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 184 FYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 34446666789999999999875 45677766654
No 86
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=72.24 E-value=25 Score=30.47 Aligned_cols=37 Identities=22% Similarity=0.118 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCChhhhHHcCCcccceeec---hHHHHHHHH
Q 025348 143 NIAIAFVKDLPDVEGDKEFGLRTLPVILG---KEKVFSISV 180 (254)
Q Consensus 143 ~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G---~~~~~~~~~ 180 (254)
..+...+||+.|+|.|+.. +++=|..=| ++.+.....
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~is~~~a~~~~~ 89 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKIN-RPNRPLPRGAMSRKAALYYSL 89 (277)
T ss_pred HHHHhHHHhhhhHhccccC-CCCCCCCCCccCHHHHHHHHH
Confidence 4566889999999999964 466665544 444444333
No 87
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=71.78 E-value=19 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcccchhhhhccC-CCCccccC
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNK-PHLPLASG 35 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 35 (254)
++-+.+-..+|+..|+|.|++.. +.-|+.=|
T Consensus 187 ~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 187 ILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 34444556789999999997654 55665555
No 88
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=70.59 E-value=21 Score=31.46 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC-cccceeech
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILGK 172 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~ 172 (254)
..+...+-..+||+.|+|-|++..| |.=|..=|+
T Consensus 53 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 53 GLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 3344566778999999999998876 455655553
No 89
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.49 E-value=15 Score=27.51 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=34.6
Q ss_pred hhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchhHHHHH-HHHHHHHHhHhcCC-Cccccccccc
Q 025348 22 IDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSPPLFIG-LITWWIVGAAYSID-LPLLRWKGSP 94 (254)
Q Consensus 22 ~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~~~~~~-~~~~~~~~~~Ys~~-~pp~~lKr~~ 94 (254)
-||.|+ .|.+=+.+|..|......+. +..++|+.+++..+.+....+ .+++.++++.+... .- |+||..
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~--rlKRGr 77 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLA--RLKRGK 77 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHcCC
Confidence 467764 35556677888877665554 234444444444454433322 13344444444421 11 567653
No 90
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=70.48 E-value=27 Score=30.93 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC-cccceeec---hHHHHHHHH
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPVILG---KEKVFSISV 180 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G---~~~~~~~~~ 180 (254)
..+...+-..+||+.|+|-|++..+ +.=|..=| ++.+..+..
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~ 101 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGL 101 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 3445667788999999999997654 23344334 444444433
No 91
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=68.84 E-value=37 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcccchhhhhccC-CCCccccCccC
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNK-PHLPLASGDFS 38 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~ls 38 (254)
++-+..-...|.+.|+|.|++.. |.-|+.-|+-+
T Consensus 172 ~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 206 (282)
T PRK12848 172 ILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence 34445556789999999998754 56676666543
No 92
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=68.71 E-value=35 Score=29.55 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCChhhhHHcCC-ccccee---echHHHHHHHHHH
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFGL-RTLPVI---LGKEKVFSISVSM 182 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~---~G~~~~~~~~~~~ 182 (254)
.+...+-..+||+.|.|-|++..+ ++=|.. +..+.+......+
T Consensus 45 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~ 91 (280)
T TIGR01473 45 TLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLL 91 (280)
T ss_pred HHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 344566788999999999997543 333433 3445454444333
No 93
>PRK08238 hypothetical protein; Validated
Probab=66.87 E-value=36 Score=32.19 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC-ccccee---echHHHHHHHHHHHHHH
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPVI---LGKEKVFSISVSMLLMA 186 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~---~G~~~~~~~~~~~~~~~ 186 (254)
+++...+...+||+.|+|.||+.-+ |.=|.. +..+.+..+..++..++
T Consensus 235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455667778999999999999732 333443 34454544444433333
No 94
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=66.55 E-value=37 Score=29.78 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCChhhhHHcCC-cccce---eechHHHHHHH
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFGL-RTLPV---ILGKEKVFSIS 179 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~~G~~~~~~~~ 179 (254)
.+...+-..+||+.|.|-|++..| ++=|. ++.++.+....
T Consensus 54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 97 (296)
T PRK04375 54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG 97 (296)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 344566678999999999998543 22333 33445454443
No 95
>PRK11383 hypothetical protein; Provisional
Probab=65.41 E-value=64 Score=25.19 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=38.0
Q ss_pred HHHHHHHhHhcCCCcccccc--ccchhHHHHHHHHHH-HHhhhHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 025348 72 ITWWIVGAAYSIDLPLLRWK--GSPLMAAVTIMILNG-LLLQFPYFVHVQKYVLGRPLEFTKPLLFAAAFMGIFNIAIAF 148 (254)
Q Consensus 72 ~~~~~~~~~Ys~~~pp~~lK--r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (254)
+.+++..+.|-. -.|-| ..+..+...+ ..|. .+..++.+. .+..+.+...+........++......+..
T Consensus 49 ~lglF~avs~QK---~vRD~~egi~vt~~f~~-~cw~a~l~~i~LL~---iGLwNA~l~lsEKGfY~~af~lsLFgai~v 121 (145)
T PRK11383 49 VLGLFSAASYQK---TVRDKYEGIPTTSIYYM-TCLTVFIISVALLM---VGLWNATLLLSEKGFYGLAFFLSLFGAVAV 121 (145)
T ss_pred HHHHHHHHHHHH---HHhhcccCCChhHHHHH-HHHHHHHHHHHHHH---HHHhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 445555555652 12334 4454444333 3342 222333322 133333334444444444443334456677
Q ss_pred hcCCCChhhhH
Q 025348 149 VKDLPDVEGDK 159 (254)
Q Consensus 149 ~~~~~D~e~D~ 159 (254)
-++.||....+
T Consensus 122 QKn~RD~~~~~ 132 (145)
T PRK11383 122 QKNIRDAGINP 132 (145)
T ss_pred Hhhhhhhhhcc
Confidence 89999985443
No 96
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=64.56 E-value=49 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
..+-+.+-..+|++.|+|.|++. .|.-|+.-|+
T Consensus 168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 34455566799999999999865 4566655554
No 97
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=63.31 E-value=43 Score=29.38 Aligned_cols=31 Identities=19% Similarity=-0.055 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCChhhhHHcCC-cccceeec
Q 025348 141 IFNIAIAFVKDLPDVEGDKEFGL-RTLPVILG 171 (254)
Q Consensus 141 ~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G 171 (254)
+...+-..+||+.|+|-|++..| +.=|..=|
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG 84 (291)
T PRK12886 53 GARTAAMGFNRLIDAEIDARNPRTAGRAIPAG 84 (291)
T ss_pred HHHHHHHHHHhHHhhccCCCCCCCCCCCCCCC
Confidence 44555677999999999997653 22355445
No 98
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=62.47 E-value=67 Score=28.18 Aligned_cols=42 Identities=2% Similarity=-0.026 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCChhhhHHcCCc-ccc---eeechHHHHHHHHHH
Q 025348 141 IFNIAIAFVKDLPDVEGDKEFGLR-TLP---VILGKEKVFSISVSM 182 (254)
Q Consensus 141 ~~~~~~~~~~~~~D~e~D~~~G~~-Tl~---v~~G~~~~~~~~~~~ 182 (254)
+...+-..+||+-|+|-|++.-|+ .=| =++..+.+......+
T Consensus 48 ~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~ 93 (286)
T PRK12895 48 SARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIF 93 (286)
T ss_pred HHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 345556789999999999987332 223 334455554444333
No 99
>PLN02776 prenyltransferase
Probab=59.86 E-value=69 Score=28.89 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCChhhhHHcCC-cccce---eechHHHHHHH
Q 025348 139 MGIFNIAIAFVKDLPDVEGDKEFGL-RTLPV---ILGKEKVFSIS 179 (254)
Q Consensus 139 ~~~~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~~G~~~~~~~~ 179 (254)
..+...+-..+||+.|+|-|++..| +.=|. ++..+.+....
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~ 82 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWA 82 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHH
Confidence 3445666778999999999988654 23333 44445444433
No 100
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=59.37 E-value=52 Score=29.13 Aligned_cols=31 Identities=13% Similarity=-0.072 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCChhhhHHcCC-cccceeech
Q 025348 142 FNIAIAFVKDLPDVEGDKEFGL-RTLPVILGK 172 (254)
Q Consensus 142 ~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~~G~ 172 (254)
.-.+-..+||+-|+|-|++.-| ++=|..=|+
T Consensus 59 ~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 59 ARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3445577999999999998875 344544454
No 101
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=58.66 E-value=66 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.4
Q ss_pred CccccCccCHHHHHHH
Q 025348 30 LPLASGDFSIGEGVAI 45 (254)
Q Consensus 30 Rpl~sG~ls~~~a~~~ 45 (254)
-|+++|+++.++...-
T Consensus 59 vPiAtGki~~~~l~~~ 74 (140)
T PF04284_consen 59 VPIATGKIGFKDLLNS 74 (140)
T ss_pred ccccCCCcCHHHHHHH
Confidence 6999999999988553
No 102
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=58.65 E-value=81 Score=27.63 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCChhhhHHcC
Q 025348 140 GIFNIAIAFVKDLPDVEGDKEFG 162 (254)
Q Consensus 140 ~~~~~~~~~~~~~~D~e~D~~~G 162 (254)
.+...+....||+.|.|.|+...
T Consensus 50 ~l~~~~~n~~Ndy~D~~~g~D~~ 72 (296)
T PRK05951 50 FLLHASLNVFNDYKDYVLDCDHH 72 (296)
T ss_pred HHHHHHHHHHHhHHHHhcCCccc
Confidence 34466778899999955554443
No 103
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=56.59 E-value=72 Score=28.32 Aligned_cols=33 Identities=24% Similarity=0.104 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcccchhhhhcc-CCCCccccCc
Q 025348 4 AILMNIFVTAINQLSDVEIDKVN-KPHLPLASGD 36 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 36 (254)
.++-+..-..++++.|+|.|++. .|.-|..-|+
T Consensus 201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 34445555677899999999764 5667766665
No 104
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=55.75 E-value=85 Score=27.51 Aligned_cols=21 Identities=19% Similarity=-0.016 Sum_probs=16.4
Q ss_pred HHHHHHhcCCCChhhhHHcCC
Q 025348 143 NIAIAFVKDLPDVEGDKEFGL 163 (254)
Q Consensus 143 ~~~~~~~~~~~D~e~D~~~G~ 163 (254)
..+-..+||+.|+|-|++..|
T Consensus 60 ~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 60 RNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHhhhhhccccCCCC
Confidence 344567899999999988753
No 105
>PLN02878 homogentisate phytyltransferase
Probab=51.65 E-value=83 Score=27.56 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=21.6
Q ss_pred HHhcCCCChhhhHHcCCcccceeechH
Q 025348 147 AFVKDLPDVEGDKEFGLRTLPVILGKE 173 (254)
Q Consensus 147 ~~~~~~~D~e~D~~~G~~Tl~v~~G~~ 173 (254)
--+||+.|+|=|| .++...|.-=|+-
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~i 65 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGEF 65 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCCC
Confidence 3489999999994 8899999987753
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=40.21 E-value=2.1e+02 Score=27.23 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhcccchhhhhc
Q 025348 3 PAILMNIFVTAINQLSDVEIDKV 25 (254)
Q Consensus 3 ~~~l~~~a~~~~Nd~~D~~~D~~ 25 (254)
+.+++..++-.-+|+++.-+|..
T Consensus 361 aGL~l~iasavsHDiY~~vik~~ 383 (529)
T COG4147 361 AGLLLVIASAVSHDLYAMVIKKG 383 (529)
T ss_pred hhHHHHHHHHHHhHHHHHHhCCC
Confidence 45566677777888888876654
No 107
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=37.44 E-value=1.7e+02 Score=22.16 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=24.8
Q ss_pred hhhccCCCCccccCccCHHHHHHHHHHH--HHHHHHHHHHHhcchh
Q 025348 22 IDKVNKPHLPLASGDFSIGEGVAIAVIS--TMTLQSVAMGIMLRSP 65 (254)
Q Consensus 22 ~D~~n~~~Rpl~sG~ls~~~a~~~~~~~--~a~~l~l~l~~~~~~~ 65 (254)
-|+.|+ .|.+=+.+|..|......+. ++.++|+.+++..+.+
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467765 35566677888876655444 2344555555555544
No 108
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=36.19 E-value=1.6e+02 Score=21.10 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=12.4
Q ss_pred hhccCCCCccccCccCHHHHH
Q 025348 23 DKVNKPHLPLASGDFSIGEGV 43 (254)
Q Consensus 23 D~~n~~~Rpl~sG~ls~~~a~ 43 (254)
|+.|+|.|-. -.+..|+.
T Consensus 7 ~~Ld~~~~i~---g~t~DE~i 24 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEFL 24 (95)
T ss_pred CccCCCCeEE---EeeHHHHH
Confidence 5667776654 67888884
No 109
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=32.44 E-value=24 Score=29.36 Aligned_cols=34 Identities=44% Similarity=0.647 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCChhhhH----------HcCCcccceeechHHH
Q 025348 142 FNIAIAFVKDLPDVEGDK----------EFGLRTLPVILGKEKV 175 (254)
Q Consensus 142 ~~~~~~~~~~~~D~e~D~----------~~G~~Tl~v~~G~~~~ 175 (254)
...+..+.+|++|..+|. +.|+.|+|.....+..
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 345677888999988887 8999999999884433
No 110
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=29.80 E-value=40 Score=22.82 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccC
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNK 27 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~ 27 (254)
+++++....++..|=|+-+++||.+.
T Consensus 39 i~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 39 IGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 56788889999999999999998653
No 111
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=29.28 E-value=3.8e+02 Score=24.64 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHhhcccchhh
Q 025348 7 MNIFVTAINQLSDVEI 22 (254)
Q Consensus 7 ~~~a~~~~Nd~~D~~~ 22 (254)
++.--.++|++++.++
T Consensus 117 ~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 117 LHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 4444567788877643
No 112
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=28.91 E-value=1.5e+02 Score=26.42 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHH
Q 025348 144 IAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAYGAA 190 (254)
Q Consensus 144 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~ 190 (254)
....+-.|+-| ++|.+.|+.|....+|+..+....-.++.-++-.+
T Consensus 80 ~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l 125 (322)
T COG0142 80 TASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELL 125 (322)
T ss_pred HHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHH
Confidence 33445556655 67889999999999999998877766665555443
No 113
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=28.15 E-value=94 Score=24.51 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHhcCCCChhhhHHcCCcccceee
Q 025348 146 IAFVKDLPDVEGDKEFGLRTLPVIL 170 (254)
Q Consensus 146 ~~~~~~~~D~e~D~~~G~~Tl~v~~ 170 (254)
.+-+-+-++++++.|.+++.+-..-
T Consensus 115 i~~iL~~p~V~~~~K~~i~~i~~~K 139 (155)
T PF10777_consen 115 IDKILQSPQVPDEIKQGIQRIISTK 139 (155)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445577888888888877664443
No 114
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=28.02 E-value=2.4e+02 Score=20.56 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHhcCCCccccccccchhHHHHHHHHH
Q 025348 35 GDFSIGEGVAIAVISTMTLQSVAMGIMLRSPPLFIGLITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILN 105 (254)
Q Consensus 35 G~ls~~~a~~~~~~~~a~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~ 105 (254)
.-.+..|+....+ ++.+++..|.. +...+++......|. |+|.....+.+.....|
T Consensus 22 ~~~~~DE~~~~~~-------~~~~Gi~~~~~--l~g~i~g~~~~~~~r------~lK~g~g~~~l~h~~YW 77 (101)
T PRK13707 22 FGLPLDELIPAAI-------CIGWGITTSKY--LFGIIAAVLVWFGIR------KLKKGRGSSWLRDLIYW 77 (101)
T ss_pred EeeeHHHHHHHHH-------HHHHHHHHchH--HHHHHHHHHHHHHHH------HHHcCCChhHHHHHHHH
Confidence 3456777775332 23333334422 222245666666776 57766555555555544
No 115
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=26.83 E-value=3.9e+02 Score=22.51 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcccchhhhhccCCCCccc-------cC-cc--CHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHH-
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNKPHLPLA-------SG-DF--SIGEGVAIAVISTMTLQSVAMGIMLRS---PPLFIG- 70 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~-------sG-~l--s~~~a~~~~~~~~a~~l~l~l~~~~~~---~~~~~~- 70 (254)
.+....|.+.|+....-+.+.-|..||.. +| .. |-.|-..+..+- ..+...-.+-.+. ...+..
T Consensus 57 a~~~~~G~v~Ne~in~viK~il~qpRP~~~~~~t~~s~yGMPSSHSQfM~Ffs~y--~~l~~y~~~~~~~~s~~~~i~s~ 134 (228)
T KOG3146|consen 57 AIWFVIGQVSNEFINVVIKNILKQPRPVSFPDTTLRSGYGMPSSHSQFMGFFSVY--SSLSVYKWLGTNNFSRFLFIKSG 134 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccCCCCCchHHHHHHHHHHH--HHHHHHHHHhccchHHHHHHHHH
Confidence 35667888999999887777666667521 11 11 122323332222 2233222221111 111111
Q ss_pred HHHHHHHHhHhcCCCccccccccchhHHHHHHHHHHHHhhhHHHH
Q 025348 71 LITWWIVGAAYSIDLPLLRWKGSPLMAAVTIMILNGLLLQFPYFV 115 (254)
Q Consensus 71 ~~~~~~~~~~Ys~~~pp~~lKr~~~~~~~~~~~~~~~~~~~~~~~ 115 (254)
+..++...+.||. ..+|.+++-..+.++..++. +.+-|+.
T Consensus 135 ~~laLs~~v~~sR----Vyl~yHt~sQVv~G~ivG~l-~g~~Wf~ 174 (228)
T KOG3146|consen 135 LLLALSFYVCYSR----VYLKYHTLSQVVVGAIVGGL-VGILWFY 174 (228)
T ss_pred HHHHHHHHHHHHH----HHHHhccHHHHHHHHHhhhh-HHHHHHH
Confidence 1223333456773 45899998877777776653 3444544
No 116
>COG4125 Predicted membrane protein [Function unknown]
Probab=26.55 E-value=1.3e+02 Score=23.44 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcccchhhhhccCC
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKP 28 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~ 28 (254)
+..+-...+|-.+..-.|+..+|
T Consensus 48 ~~atvAm~WN~vyN~lFd~~~rr 70 (149)
T COG4125 48 LSATVAMIWNFVYNLLFDRAERR 70 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666665554
No 117
>PRK10581 geranyltranstransferase; Provisional
Probab=24.95 E-value=38 Score=29.86 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCChh-----------hhHHcCCcccceeechHHHHHHHH
Q 025348 142 FNIAIAFVKDLPDVE-----------GDKEFGLRTLPVILGKEKVFSISV 180 (254)
Q Consensus 142 ~~~~~~~~~~~~D~e-----------~D~~~G~~Tl~v~~G~~~~~~~~~ 180 (254)
+-.++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~ 264 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHH
Confidence 456677788888864 456789999999999887766443
No 118
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=21.02 E-value=5.7e+02 Score=22.40 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=8.2
Q ss_pred HHHHhHhcCCCccc
Q 025348 75 WIVGAAYSIDLPLL 88 (254)
Q Consensus 75 ~~~~~~Ys~~~pp~ 88 (254)
.....+|.. .|+.
T Consensus 202 ~~f~~ly~~-lP~~ 214 (303)
T COG1295 202 LGFFLLYRF-LPNV 214 (303)
T ss_pred HHHHHHHHH-cCCc
Confidence 344567876 6765
No 119
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=20.97 E-value=3.6e+02 Score=25.89 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhcccch
Q 025348 4 AILMNIFVTAINQLSDV 20 (254)
Q Consensus 4 ~~l~~~a~~~~Nd~~D~ 20 (254)
+.+...++...||++..
T Consensus 373 s~l~a~st~i~~Diy~~ 389 (549)
T TIGR02711 373 GLTLAGASAVSHDLYAN 389 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566777888765
No 120
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=20.71 E-value=1.4e+02 Score=21.95 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhcccchhhhhccCCCCccc
Q 025348 2 VPAILMNIFVTAINQLSDVEIDKVNKPHLPLA 33 (254)
Q Consensus 2 ~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~ 33 (254)
+.+...-...-.+|.-.+.-.|+..+.++|..
T Consensus 46 i~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~a 77 (104)
T PF01219_consen 46 ILAIFLVLIAELLNTAIERLVDLVSPEYHPLA 77 (104)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT----S-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHcchhhcHHH
Confidence 34555666778899999999999887677743
Done!