Query 025348
Match_columns 254
No_of_seqs 245 out of 1981
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 08:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 57.4 22 0.0016 27.6 8.5 44 5-49 71-114 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 34.7 9.4 0.00068 30.2 2.4 47 143-189 77-124 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 23.1 20 0.0014 28.0 2.4 46 143-188 74-120 (290)
4 d1v4ea_ a.128.1.1 (A:) Octopre 13.3 82 0.0059 24.0 4.0 43 144-187 67-109 (280)
5 d1te7a_ b.122.1.7 (A:) Hypothe 10.6 43 0.0031 21.8 1.1 15 155-169 12-26 (103)
6 d1rqja_ a.128.1.1 (A:) Farnesy 10.0 40 0.0029 26.2 0.9 43 6-49 75-117 (299)
7 d1diha2 d.81.1.3 (A:131-240) D 6.4 90 0.0066 20.2 1.3 29 7-35 10-39 (110)
8 d1om2a_ a.23.4.1 (A:) Mitochon 5.0 1.7E+02 0.012 18.5 2.0 15 224-238 8-22 (95)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 4.5 1E+02 0.0074 24.2 0.7 34 146-180 94-127 (348)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 4.1 4.3E+02 0.032 18.2 4.1 80 1-82 101-186 (199)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=57.40 E-value=22 Score=27.63 Aligned_cols=44 Identities=5% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH
Q 025348 5 ILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 5 ~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
=++|.+.-+.+|+.|.|.|.. +|.+|-...+.....|...+-.+
T Consensus 71 EllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l 114 (290)
T d1rtra_ 71 EMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDAL 114 (290)
T ss_dssp HHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcch
Confidence 368999999999988776543 44566555556666666554444
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=34.67 E-value=9.4 Score=30.17 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCChhh-hHHcCCcccceeechHHHHHHHHHHHHHHHHH
Q 025348 143 NIAIAFVKDLPDVEG-DKEFGLRTLPVILGKEKVFSISVSMLLMAYGA 189 (254)
Q Consensus 143 ~~~~~~~~~~~D~e~-D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~ 189 (254)
=.+..+..|++|.+. |.+.|..|.-..+|.+.+....-.++..++-.
T Consensus 77 H~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 345566789998887 58999999999999998876665555554443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=23.08 E-value=20 Score=28.01 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCChhhh-HHcCCcccceeechHHHHHHHHHHHHHHHH
Q 025348 143 NIAIAFVKDLPDVEGD-KEFGLRTLPVILGKEKVFSISVSMLLMAYG 188 (254)
Q Consensus 143 ~~~~~~~~~~~D~e~D-~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~ 188 (254)
-.+..+..|++|+++| .+.|+.|.-.++|.+.+....-.++..++.
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 3445667789888775 588999999999999886665555444443
No 4
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=13.29 E-value=82 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHhcCCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHH
Q 025348 144 IAIAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISVSMLLMAY 187 (254)
Q Consensus 144 ~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~ 187 (254)
.+..+..|+.| ++|.+.|..|.-..+|.+.+....-.++..++
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 44455567777 67889999999999999988666555544443
No 5
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=43 Score=21.80 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.7
Q ss_pred hhhhHHcCCccccee
Q 025348 155 VEGDKEFGLRTLPVI 169 (254)
Q Consensus 155 ~e~D~~~G~~Tl~v~ 169 (254)
.|.|..+|+||+.++
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 578999999998776
No 6
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=9.99 E-value=40 Score=26.16 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHH
Q 025348 6 LMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVIS 49 (254)
Q Consensus 6 l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~ 49 (254)
++|.++-+.+|+.|.|.|.. +|.+|-...+.....|...+-.+
T Consensus 75 llH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l 117 (299)
T d1rqja_ 75 CIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDAL 117 (299)
T ss_dssp HHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchH
Confidence 68899999999998765432 33455444455566666555444
No 7
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=6.41 E-value=90 Score=20.21 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHhhcccchh-hhhccCCCCccccC
Q 025348 7 MNIFVTAINQLSDVE-IDKVNKPHLPLASG 35 (254)
Q Consensus 7 ~~~a~~~~Nd~~D~~-~D~~n~~~Rpl~sG 35 (254)
...+.-.+|+++|.+ +|.+.+...=-|||
T Consensus 10 ~~~~a~~l~~~~dieI~E~HH~~K~DaPSG 39 (110)
T d1diha2 10 LEKAAKVMGDYTDIEIIEAHHRHKVDAPSG 39 (110)
T ss_dssp HHHHHHHHTTTSEEEEEEEECTTCCSSSCH
T ss_pred HHHHHHhcccccChhhHHHHHhcCCCCCch
Confidence 445556688888988 45554433333344
No 8
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.00 E-value=1.7e+02 Score=18.52 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.9
Q ss_pred ccccchHHHHHHHHH
Q 025348 224 IDLSDAKSMQSLYMF 238 (254)
Q Consensus 224 ~d~~~~~~~~~f~~~ 238 (254)
=|++|.+..++||+.
T Consensus 8 P~~~D~~~~e~~Fl~ 22 (95)
T d1om2a_ 8 PDLKDAEAVQKFFLE 22 (95)
T ss_dssp SCSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 388999999999975
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.54 E-value=1e+02 Score=24.18 Aligned_cols=34 Identities=12% Similarity=-0.102 Sum_probs=24.0
Q ss_pred HHHhcCCCChhhhHHcCCcccceeechHHHHHHHH
Q 025348 146 IAFVKDLPDVEGDKEFGLRTLPVILGKEKVFSISV 180 (254)
Q Consensus 146 ~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~ 180 (254)
..+..|+.| ++|.+.|+.|+-.++|.+.+....-
T Consensus 94 sLihDDi~D-~~~~RRG~pt~~~~~g~~~ail~gd 127 (348)
T d1fpsa_ 94 FLVADDIMD-QSLTRRGQLCWYKKEGVGLDAINDS 127 (348)
T ss_dssp HHHHHHHTT-TCCEETTEECTTTSTTTTTTHHHHH
T ss_pred HHHhCcccc-CCccccccchhhhhccccHHHHHHH
Confidence 334455555 5677899999999999987654443
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.11 E-value=4.3e+02 Score=18.21 Aligned_cols=80 Identities=6% Similarity=0.017 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhhcccchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHHhcc------hhHHHHHHHHH
Q 025348 1 MVPAILMNIFVTAINQLSDVEIDKVNKPHLPLASGDFSIGEGVAIAVISTMTLQSVAMGIMLR------SPPLFIGLITW 74 (254)
Q Consensus 1 ~~~~~l~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~a~~l~l~l~~~~~------~~~~~~~~~~~ 74 (254)
+.-...+..+.+..+++...++.+.++|++-+.++--+...+...+... ...++......+ ...+......+
T Consensus 101 i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~lT--t~~~f~~l~~~~~~~~~~~~~~g~~i~~g 178 (199)
T d1iwga7 101 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMV--LSAVFVPMAFFGGSTGAIYRQFSITIVSA 178 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHHHH--HHHHHTTTTCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhhHHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q ss_pred HHHHhHhc
Q 025348 75 WIVGAAYS 82 (254)
Q Consensus 75 ~~~~~~Ys 82 (254)
.....+.+
T Consensus 179 v~~s~i~a 186 (199)
T d1iwga7 179 MALSVLVA 186 (199)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Done!