BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025351
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 81/106 (76%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
PE IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V +
Sbjct: 54 PELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 113
Query: 94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
+ ED I AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%)
Query: 35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
E IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V ++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
ED I AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
PE K W+ EEDRI+ + +R G R W+ I++ + GR+ + + W + + V
Sbjct: 52 PEVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V ++
Sbjct: 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 97 EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
ED I AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
PE K W+ EEDRI+ + +R G R W+ I++ + GR+ + + W + + V
Sbjct: 52 PEVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
P+ +KGPW+ EED+ + LV++YG + W+LI++++KGR GK CR RW N L+P V +
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
+ ED I AH GNRWA IA+LLPGRTDNAVKNHWNST+KR+
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 77/106 (72%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
PE KGPW+ EED+ + V++YGP+ WS I++++KGR GK CR RW N L+P V +
Sbjct: 23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 82
Query: 94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
+ ED I AH R GNRWA IA+LLPGRTDNAVKNHWNST++R+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
+KGP++ ED ++ V+ GP+NW I+ ++ RS K CR RW N L P+V ++P
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 97 EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
ED+TI + + G++W+ IA+L+PGRTDNA+KN WNS++ +R
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVA 89
P +K W+ EED + R + G + WS+I++ I GR+ + + RW + +S ++
Sbjct: 50 PAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
K ++ EED +L R V ++G +W +I+ R+ + CR RW N L+PS++H P++ E
Sbjct: 11 KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 98 DDTILAAHARFGNRWATIARLLPGRTDNAVKNHW 131
D ++ +G +WA IA+ PGRTD +KN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 93 FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTL 135
F+P ED+ + A A+ G+ W IA P R ++ W + L
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
K ++ EED L +LV RYG ++W IS+ + R+ + CR RW N ++P++ P+SP E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 98 DDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140
D + +A +G +W I++ L R+DN ++N W + R +
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 88 VAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
V ++ ED I AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
K W+ EEDRI+ + +R G R W+ I++ + GR+ + + W + + V
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 87 SVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
V ++ ED + AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
K W+ EEDRIL + +R G R W+ I++ + GR+ + + W + + V
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 70.5 bits (171), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
IKGPW+ EED+ L +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTL 135
P++ ED ++ ++G RW+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 41/50 (82%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTL 135
P++ ED ++ ++G RW+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 68.6 bits (166), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
IKGPW+ EED+ + LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTL 135
P++ ED ++ ++G RW+ IA+ L GR + W++ L
Sbjct: 5 PWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
K W+ EED L +LVE+ G +W +I+ Y+ R+ C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
K W+ EED L +LVE+ G +W +I+ Y+ R+ C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
W ED IL V +YG WS I+ + +S K C+ RW L PS+ +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS 85
K W+ EED L LV ++G ++W ++ + R+ + C+ RW LS
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 70 GRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR-WATIARLLPGRTDNAVK 128
G SG S +++W ++ ED+ + A +FG + W +A P RTD +
Sbjct: 1 GSSGSSGKVKWTHE-------------EDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQ 47
Query: 129 NHWNSTL 135
W L
Sbjct: 48 YRWLRVL 54
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 40 PWSAEEDRILTRLVERY---GPRNWSLISRYIKGRSGKSCRLRW 80
PW+ EE ++L + ++ Y P W I+ + GR+ K C R+
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 91 RPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHW 131
RP+S E+ A A + +RWA +AR + GRT VK H+
Sbjct: 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 106 ARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140
A+FG RW I++L+ RT VK++ K + +
Sbjct: 25 AKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYI-KGRSGKSCR 77
W A+E+ +L E G NW+ I+ Y+ R+ + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,062,841
Number of Sequences: 62578
Number of extensions: 198301
Number of successful extensions: 413
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 49
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)