Query 025351
Match_columns 254
No_of_seqs 239 out of 1465
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.7E-35 9.4E-40 229.8 10.4 104 35-138 1-104 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 7.4E-35 2.5E-39 236.3 12.3 107 37-143 1-107 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 4.3E-35 1.5E-39 236.5 9.7 117 22-138 10-127 (128)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.7E-35 1.9E-39 229.3 8.5 104 38-141 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 6.2E-34 2.1E-38 229.5 9.6 106 33-139 6-111 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-33 5.8E-38 234.8 8.5 126 36-163 4-130 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.8E-32 9.5E-37 227.5 10.1 116 23-138 42-158 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1E-24 3.6E-29 175.6 8.4 98 64-163 1-99 (128)
9 2dim_A Cell division cycle 5-l 99.9 6.7E-23 2.3E-27 149.0 3.8 65 34-98 5-69 (70)
10 2juh_A Telomere binding protei 99.8 5.8E-20 2E-24 146.9 3.9 91 24-114 3-103 (121)
11 1ign_A Protein (RAP1); RAP1,ye 99.8 1.5E-19 5.2E-24 158.7 6.6 105 34-138 4-200 (246)
12 2roh_A RTBP1, telomere binding 99.8 7.1E-19 2.4E-23 140.8 8.1 87 25-111 18-114 (122)
13 2llk_A Cyclin-D-binding MYB-li 99.8 6.2E-19 2.1E-23 129.4 5.4 62 76-139 9-70 (73)
14 2d9a_A B-MYB, MYB-related prot 99.7 1.6E-18 5.4E-23 122.1 4.4 57 33-89 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 2.6E-18 9E-23 117.6 4.2 52 36-87 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.7 3.6E-18 1.2E-22 123.6 3.8 64 31-94 3-68 (69)
17 2dim_A Cell division cycle 5-l 99.7 1.7E-17 5.7E-22 120.4 7.1 64 85-148 4-68 (70)
18 2din_A Cell division cycle 5-l 99.7 1.3E-17 4.5E-22 119.6 5.8 60 83-143 2-61 (66)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 4.7E-18 1.6E-22 116.3 3.0 52 36-87 1-52 (52)
20 2cu7_A KIAA1915 protein; nucle 99.7 4.2E-17 1.4E-21 119.0 6.7 58 84-141 3-60 (72)
21 2d9a_A B-MYB, MYB-related prot 99.7 4.5E-17 1.5E-21 114.6 6.5 56 85-140 3-59 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 1.4E-16 4.7E-21 109.0 5.9 50 88-137 1-51 (52)
23 3osg_A MYB21; transcription-DN 99.6 3.3E-16 1.1E-20 125.7 8.7 77 85-163 6-82 (126)
24 1gv2_A C-MYB, MYB proto-oncoge 99.6 3.9E-16 1.3E-20 121.1 8.2 74 88-163 2-76 (105)
25 3sjm_A Telomeric repeat-bindin 99.6 4.9E-17 1.7E-21 116.4 2.5 54 36-89 9-64 (64)
26 1x41_A Transcriptional adaptor 99.6 8.2E-17 2.8E-21 113.5 3.6 54 34-87 4-57 (60)
27 1gvd_A MYB proto-oncogene prot 99.6 2.6E-16 8.8E-21 107.7 5.9 50 88-137 1-51 (52)
28 1ity_A TRF1; helix-turn-helix, 99.6 6.9E-16 2.4E-20 111.6 7.4 61 83-143 3-66 (69)
29 1x41_A Transcriptional adaptor 99.6 4.9E-16 1.7E-20 109.5 5.9 54 85-138 3-57 (60)
30 1w0t_A Telomeric repeat bindin 99.6 5.7E-16 2E-20 106.4 5.8 50 89-138 1-53 (53)
31 2k9n_A MYB24; R2R3 domain, DNA 99.6 1.2E-15 4.2E-20 119.0 8.2 72 90-163 1-73 (107)
32 2din_A Cell division cycle 5-l 99.6 6.5E-17 2.2E-21 116.0 0.3 60 31-92 2-61 (66)
33 1w0t_A Telomeric repeat bindin 99.6 2.2E-16 7.6E-21 108.5 2.6 49 37-85 1-51 (53)
34 3zqc_A MYB3; transcription-DNA 99.6 2E-15 7E-20 121.8 8.7 72 90-163 2-74 (131)
35 2elk_A SPCC24B10.08C protein; 99.6 5E-16 1.7E-20 108.9 3.3 50 35-84 6-56 (58)
36 2yum_A ZZZ3 protein, zinc fing 99.6 3.2E-16 1.1E-20 115.0 2.1 60 33-92 3-67 (75)
37 3sjm_A Telomeric repeat-bindin 99.6 2.4E-15 8.3E-20 107.5 5.9 52 88-139 9-63 (64)
38 2yum_A ZZZ3 protein, zinc fing 99.6 1.9E-15 6.4E-20 110.8 5.4 58 85-142 3-66 (75)
39 2cu7_A KIAA1915 protein; nucle 99.5 6.2E-16 2.1E-20 112.8 1.1 62 33-96 4-65 (72)
40 2elk_A SPCC24B10.08C protein; 99.5 6.1E-15 2.1E-19 103.3 6.0 50 86-135 5-56 (58)
41 2ltp_A Nuclear receptor corepr 99.3 6.5E-16 2.2E-20 117.3 0.0 58 82-139 8-65 (89)
42 2ckx_A NGTRF1, telomere bindin 99.5 1E-14 3.5E-19 109.4 4.8 69 39-107 1-79 (83)
43 2yus_A SWI/SNF-related matrix- 99.5 1.5E-14 5E-19 107.6 5.3 54 29-83 9-62 (79)
44 2llk_A Cyclin-D-binding MYB-li 99.5 1.1E-14 3.9E-19 106.7 3.9 59 28-89 13-71 (73)
45 2aje_A Telomere repeat-binding 99.5 1.4E-14 4.8E-19 113.1 4.6 79 32-110 7-95 (105)
46 2juh_A Telomere binding protei 99.5 4.8E-14 1.6E-18 112.6 6.0 78 84-162 11-98 (121)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8E-14 2.7E-18 102.1 5.7 52 86-137 14-69 (73)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.4 6.3E-14 2.1E-18 102.7 2.3 55 31-85 11-68 (73)
49 2yus_A SWI/SNF-related matrix- 99.4 1.7E-13 5.8E-18 101.8 4.4 48 87-134 15-62 (79)
50 2ckx_A NGTRF1, telomere bindin 99.4 1.2E-12 4.1E-17 98.1 8.2 47 91-137 1-52 (83)
51 2ltp_A Nuclear receptor corepr 99.1 5.5E-14 1.9E-18 106.6 0.0 52 33-85 11-62 (89)
52 1ign_A Protein (RAP1); RAP1,ye 99.4 1.2E-12 4.1E-17 115.0 7.9 55 86-140 4-64 (246)
53 1x58_A Hypothetical protein 49 99.3 1.1E-12 3.7E-17 92.8 5.9 51 88-138 6-59 (62)
54 2aje_A Telomere repeat-binding 99.3 1.4E-12 4.8E-17 101.8 6.8 53 86-138 9-66 (105)
55 2roh_A RTBP1, telomere binding 99.3 2.2E-12 7.6E-17 103.1 7.2 77 85-163 26-113 (122)
56 2cjj_A Radialis; plant develop 99.2 7E-12 2.4E-16 95.8 5.3 49 89-137 7-59 (93)
57 2cjj_A Radialis; plant develop 99.1 1.6E-11 5.6E-16 93.8 1.6 47 38-84 8-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 1.6E-10 5.3E-15 81.5 5.9 49 89-137 11-59 (61)
59 1x58_A Hypothetical protein 49 99.0 2.6E-10 9.1E-15 80.5 3.4 49 36-85 6-57 (62)
60 2eqr_A N-COR1, N-COR, nuclear 98.9 8.3E-10 2.8E-14 77.8 3.6 46 37-83 11-56 (61)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.4E-09 8.2E-14 78.0 6.2 51 87-138 5-59 (72)
62 3hm5_A DNA methyltransferase 1 98.9 1.9E-09 6.5E-14 82.1 4.8 64 75-142 19-87 (93)
63 2iw5_B Protein corest, REST co 98.8 3.1E-09 1.1E-13 92.6 6.1 50 89-138 132-181 (235)
64 2xag_B REST corepressor 1; ami 98.7 4.9E-09 1.7E-13 100.5 4.8 47 91-137 381-427 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.7 3.8E-08 1.3E-12 71.8 6.7 53 89-141 7-63 (73)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.6 8.7E-09 3E-13 75.1 2.2 47 38-85 8-57 (72)
67 1fex_A TRF2-interacting telome 98.6 3.7E-08 1.3E-12 69.0 5.0 47 90-136 2-58 (59)
68 2iw5_B Protein corest, REST co 98.5 3.7E-08 1.3E-12 85.9 3.3 49 36-85 131-179 (235)
69 1fex_A TRF2-interacting telome 98.5 3.2E-08 1.1E-12 69.3 1.7 48 38-85 2-58 (59)
70 1wgx_A KIAA1903 protein; MYB D 98.5 4.8E-08 1.6E-12 71.3 2.5 47 39-85 9-58 (73)
71 1ofc_X ISWI protein; nuclear p 98.4 6.4E-07 2.2E-11 81.5 7.5 101 39-139 111-277 (304)
72 2yqk_A Arginine-glutamic acid 98.3 2.1E-06 7.3E-11 60.6 7.0 49 86-134 5-54 (63)
73 4eef_G F-HB80.4, designed hema 98.2 5.2E-07 1.8E-11 65.6 2.3 42 90-131 20-65 (74)
74 1ug2_A 2610100B20RIK gene prod 98.2 1.8E-06 6.2E-11 65.0 4.6 45 92-136 35-82 (95)
75 4eef_G F-HB80.4, designed hema 98.1 1.1E-06 3.7E-11 63.9 2.2 43 39-81 21-66 (74)
76 2lr8_A CAsp8-associated protei 97.3 4.7E-07 1.6E-11 64.7 0.0 45 92-137 16-63 (70)
77 2yqk_A Arginine-glutamic acid 98.0 3.4E-06 1.1E-10 59.6 3.7 48 34-82 5-53 (63)
78 2crg_A Metastasis associated p 97.8 3.3E-05 1.1E-09 55.6 6.1 45 89-133 7-52 (70)
79 4a69_C Nuclear receptor corepr 97.8 3.5E-05 1.2E-09 58.6 6.0 45 90-134 43-87 (94)
80 2xag_B REST corepressor 1; ami 97.8 1.2E-05 4.1E-10 77.2 3.8 48 35-83 377-424 (482)
81 4iej_A DNA methyltransferase 1 97.7 3.3E-05 1.1E-09 58.6 4.9 50 91-140 31-85 (93)
82 3hm5_A DNA methyltransferase 1 97.6 2.5E-05 8.6E-10 59.3 2.6 44 39-83 31-79 (93)
83 2crg_A Metastasis associated p 97.6 3.3E-05 1.1E-09 55.6 3.0 44 38-82 8-52 (70)
84 4a69_C Nuclear receptor corepr 97.6 3E-05 1E-09 59.0 2.9 43 38-81 43-85 (94)
85 4b4c_A Chromodomain-helicase-D 97.5 0.00017 6E-09 61.4 6.7 103 35-137 4-196 (211)
86 2y9y_A Imitation switch protei 97.4 0.00025 8.4E-09 66.1 7.6 102 39-141 124-295 (374)
87 2ebi_A DNA binding protein GT- 97.1 0.00026 8.8E-09 52.4 3.1 48 90-137 4-65 (86)
88 2lr8_A CAsp8-associated protei 96.1 9.7E-05 3.3E-09 52.8 0.0 46 39-85 15-62 (70)
89 2ebi_A DNA binding protein GT- 97.0 0.00013 4.5E-09 54.0 0.5 47 38-84 4-63 (86)
90 1ug2_A 2610100B20RIK gene prod 97.0 0.0012 4.2E-08 49.6 5.6 51 33-83 28-80 (95)
91 4iej_A DNA methyltransferase 1 95.6 0.0058 2E-07 46.2 2.4 44 39-83 31-79 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.5 0.073 2.5E-06 37.5 5.4 48 88-135 5-57 (64)
93 1ofc_X ISWI protein; nuclear p 93.4 0.097 3.3E-06 47.5 5.4 48 90-137 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 92.8 0.073 2.5E-06 37.5 3.0 48 36-83 5-56 (64)
95 2xb0_X Chromo domain-containin 91.6 0.09 3.1E-06 46.9 2.7 28 39-66 169-196 (270)
96 4b4c_A Chromodomain-helicase-D 91.4 0.18 6.3E-06 42.4 4.4 51 87-137 4-59 (211)
97 2xb0_X Chromo domain-containin 89.1 0.22 7.4E-06 44.4 3.0 27 91-117 169-196 (270)
98 2y9y_A Imitation switch protei 80.2 0.67 2.3E-05 43.1 1.9 43 38-80 228-285 (374)
99 2o8x_A Probable RNA polymerase 72.0 4.3 0.00015 26.9 3.9 41 96-137 18-58 (70)
100 2kk0_A AT-rich interactive dom 69.0 7.7 0.00026 30.9 5.3 60 99-158 67-139 (145)
101 1ku3_A Sigma factor SIGA; heli 67.9 6 0.0002 27.0 3.9 44 95-139 12-59 (73)
102 2p7v_B Sigma-70, RNA polymeras 65.1 6.1 0.00021 26.5 3.5 43 96-139 8-54 (68)
103 2li6_A SWI/SNF chromatin-remod 64.6 4.2 0.00014 31.2 2.8 38 100-137 53-98 (116)
104 3cz6_A DNA-binding protein RAP 64.5 4.3 0.00015 33.4 3.0 30 33-65 109-146 (168)
105 2jrz_A Histone demethylase jar 61.4 8.8 0.0003 29.4 4.1 39 99-137 43-93 (117)
106 2lm1_A Lysine-specific demethy 60.6 10 0.00035 28.3 4.3 39 99-137 47-97 (107)
107 1kkx_A Transcription regulator 58.5 6.3 0.00022 30.7 2.9 38 100-137 52-97 (123)
108 3hug_A RNA polymerase sigma fa 57.0 11 0.00038 26.7 3.9 42 95-137 39-80 (92)
109 2eqy_A RBP2 like, jumonji, at 56.6 12 0.0004 28.9 4.1 38 100-137 46-95 (122)
110 2cxy_A BAF250B subunit, HBAF25 56.0 12 0.00042 28.8 4.2 38 100-137 55-104 (125)
111 1c20_A DEAD ringer protein; DN 52.7 14 0.00047 28.7 4.0 40 99-138 55-107 (128)
112 2rq5_A Protein jumonji; develo 51.8 22 0.00074 27.6 4.9 56 100-160 46-114 (121)
113 1tty_A Sigma-A, RNA polymerase 47.9 20 0.00068 25.2 3.9 43 96-139 21-67 (87)
114 2q1z_A RPOE, ECF SIGE; ECF sig 47.3 16 0.00055 28.5 3.7 30 107-137 149-178 (184)
115 2jxj_A Histone demethylase jar 46.8 8.5 0.00029 28.2 1.8 37 100-136 40-88 (96)
116 2p1m_A SKP1-like protein 1A; F 46.5 12 0.00042 29.9 2.8 36 61-103 118-153 (160)
117 1x3u_A Transcriptional regulat 45.6 27 0.00093 23.5 4.3 44 93-139 17-60 (79)
118 1or7_A Sigma-24, RNA polymeras 45.4 24 0.00081 27.7 4.5 30 107-137 154-183 (194)
119 3i4p_A Transcriptional regulat 44.0 21 0.00072 28.1 3.9 45 96-141 3-48 (162)
120 1xsv_A Hypothetical UPF0122 pr 41.2 34 0.0012 25.5 4.5 41 96-137 28-68 (113)
121 1ig6_A MRF-2, modulator recogn 40.2 13 0.00043 27.9 1.9 39 99-137 36-87 (107)
122 3mzy_A RNA polymerase sigma-H 39.0 27 0.00094 26.2 3.7 31 106-137 121-151 (164)
123 3ulq_B Transcriptional regulat 38.4 41 0.0014 24.0 4.4 48 89-139 26-73 (90)
124 1fse_A GERE; helix-turn-helix 38.3 33 0.0011 22.6 3.7 46 91-139 10-55 (74)
125 3c57_A Two component transcrip 37.6 34 0.0012 24.5 3.8 46 92-140 27-72 (95)
126 2li6_A SWI/SNF chromatin-remod 37.5 4.6 0.00016 30.9 -1.1 39 48-86 53-98 (116)
127 1rp3_A RNA polymerase sigma fa 37.2 37 0.0013 27.3 4.5 41 96-137 190-230 (239)
128 1je8_A Nitrate/nitrite respons 37.1 34 0.0012 23.8 3.7 45 92-139 21-65 (82)
129 2jpc_A SSRB; DNA binding prote 35.8 47 0.0016 21.1 4.0 41 98-140 3-43 (61)
130 2ast_A S-phase kinase-associat 34.0 19 0.00065 28.6 2.1 35 62-103 120-154 (159)
131 3e7l_A Transcriptional regulat 33.7 52 0.0018 21.7 4.0 35 96-131 19-53 (63)
132 1ntc_A Protein (nitrogen regul 33.4 65 0.0022 22.9 4.8 35 96-131 51-85 (91)
133 2yqf_A Ankyrin-1; death domain 33.3 69 0.0024 23.8 5.1 36 93-129 13-48 (111)
134 2rnj_A Response regulator prot 32.3 41 0.0014 23.7 3.5 45 92-139 29-73 (91)
135 2of5_H Leucine-rich repeat and 31.8 43 0.0015 25.4 3.7 31 98-129 13-43 (118)
136 3v7d_A Suppressor of kinetocho 31.5 19 0.00066 29.1 1.8 41 61-113 126-166 (169)
137 1tc3_C Protein (TC3 transposas 31.3 79 0.0027 18.3 4.8 38 92-131 5-42 (51)
138 2e1c_A Putative HTH-type trans 31.2 56 0.0019 26.0 4.5 46 95-141 26-72 (171)
139 2of5_A Death domain-containing 31.0 48 0.0016 25.2 3.8 39 86-128 15-53 (114)
140 2dbb_A Putative HTH-type trans 30.2 65 0.0022 24.6 4.6 44 96-140 9-53 (151)
141 2o71_A Death domain-containing 29.9 51 0.0017 25.0 3.8 28 100-128 26-53 (115)
142 1s7o_A Hypothetical UPF0122 pr 29.2 58 0.002 24.3 4.0 41 96-137 25-65 (113)
143 2jvw_A Uncharacterized protein 28.0 22 0.00075 26.1 1.3 45 46-102 18-69 (88)
144 2cyy_A Putative HTH-type trans 26.0 78 0.0027 24.2 4.4 45 96-141 7-52 (151)
145 1wxp_A THO complex subunit 1; 24.1 73 0.0025 23.6 3.7 31 98-129 18-48 (110)
146 1dw9_A Cyanate lyase; cyanate 24.0 62 0.0021 26.2 3.5 30 99-129 16-45 (156)
147 1p4w_A RCSB; solution structur 22.5 1E+02 0.0035 22.4 4.2 48 90-140 32-79 (99)
148 1umq_A Photosynthetic apparatu 20.2 86 0.003 22.3 3.3 35 95-130 40-74 (81)
149 2p5v_A Transcriptional regulat 20.1 1.1E+02 0.0037 23.6 4.2 44 96-140 10-54 (162)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.7e-35 Score=229.78 Aligned_cols=104 Identities=58% Similarity=1.136 Sum_probs=99.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhh
Q 025351 35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWAT 114 (254)
Q Consensus 35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~ 114 (254)
++++|+||+|||++|+.+|++||..+|..||..|++|+++||+.||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 36789999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHhhccc
Q 025351 115 IARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 115 IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
||+.|||||+++|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999875
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=7.4e-35 Score=236.25 Aligned_cols=107 Identities=42% Similarity=0.935 Sum_probs=103.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhh
Q 025351 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIA 116 (254)
Q Consensus 37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA 116 (254)
.||+||+|||++|+.+|.+||..+|..||..|++|++.||+.||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 47999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351 117 RLLPGRTDNAVKNHWNSTLKRRTREHP 143 (254)
Q Consensus 117 ~~l~gRT~~q~k~Rw~~~lk~~~~~~~ 143 (254)
.+|+|||+++|++||+++|++++....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999987765
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4.3e-35 Score=236.55 Aligned_cols=117 Identities=52% Similarity=0.971 Sum_probs=103.4
Q ss_pred CCCCcCcccc-CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHH
Q 025351 22 SGNNKTRRAT-HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDT 100 (254)
Q Consensus 22 s~~~k~r~~~-~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~ 100 (254)
...|+.|+.. ++|..++|+||+|||++|+++|++||..+|..||..|++|++.||+.||.++|+|.+++++||+|||++
T Consensus 10 ~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~ 89 (128)
T 1h8a_C 10 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI 89 (128)
T ss_dssp ------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHH
Confidence 3457777754 699999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 101 ILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 101 Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
|++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus 90 L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 90 IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998875
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.7e-35 Score=229.28 Aligned_cols=104 Identities=35% Similarity=0.727 Sum_probs=100.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhh
Q 025351 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIAR 117 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~ 117 (254)
||+||+|||++|+.+|.+||..+|..||..|++|+++||+.||.++|+|.+++++||+|||.+|++++.+||++|..||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhhcccccC
Q 025351 118 LLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 118 ~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
.|||||+++|++||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999988876543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=6.2e-34 Score=229.52 Aligned_cols=106 Identities=34% Similarity=0.721 Sum_probs=100.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRW 112 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W 112 (254)
++..++|+||+|||++|+.+|.+||. +|..||+.|++|+++||+.||.++|+|.+++++||+|||++|++++.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 45677899999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 113 ATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 113 ~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..||+.|+|||+++|++||+.++++..
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998887754
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.7e-33 Score=234.83 Aligned_cols=126 Identities=26% Similarity=0.634 Sum_probs=81.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCC-Chhh
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGN-RWAT 114 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~ 114 (254)
..+++||+|||++|+++|.+||..+|..||..|++|++.||+.||.++|+|.+.+++||+|||++|+++|..||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 568999999999999999999988999999999999999999999999999999999999999999999999996 6999
Q ss_pred hhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351 115 IARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 115 IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~ 163 (254)
||..|+|||+.||++||+++|.+...+.+ |+++|+..|++++..+|.
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~--WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPEVKKTS--WTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTTSCCSC--CCHHHHHHHHHHHHHHCS
T ss_pred HHHHcCCCCHHHHHHHHHHHhCccccccC--CChHHHHHHHHHHHHHCC
Confidence 99999999999999999999999877654 889999999999988763
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.8e-32 Score=227.45 Aligned_cols=116 Identities=53% Similarity=1.036 Sum_probs=108.2
Q ss_pred CCCcCccc-cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHH
Q 025351 23 GNNKTRRA-THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTI 101 (254)
Q Consensus 23 ~~~k~r~~-~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~L 101 (254)
..|+.|+. .++|.+++|+||+|||++|+.+|.+||..+|..||..|++|++.||+.||.++|+|.+++++||+|||.+|
T Consensus 42 ~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 121 (159)
T 1h89_C 42 VQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 121 (159)
T ss_dssp -CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHH
T ss_pred HHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHH
Confidence 44666654 46899999999999999999999999987899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 102 LAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 102 l~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 122 ~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 122 YQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999875
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=1e-24 Score=175.61 Aligned_cols=98 Identities=22% Similarity=0.582 Sum_probs=71.9
Q ss_pred cccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351 64 ISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREH 142 (254)
Q Consensus 64 Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~ 142 (254)
||+.||+|++.||+.||.++|+|.+.+++||+|||++|+++|..||. +|..||..|+|||+.||++||+++|.+...+.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 78999999999999999999999999999999999999999999996 69999999999999999999999999988765
Q ss_pred CCCCChhHHHHHHHHhhcCCC
Q 025351 143 PVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 143 ~~~~~~~e~~~L~~~~~~~~~ 163 (254)
+ |+++|+..|++++..+|.
T Consensus 81 ~--WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 81 S--WTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp C--CCHHHHHHHHHHHHHHCS
T ss_pred c--CCHHHHHHHHHHHHHHCc
Confidence 4 889999999999998773
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6.7e-23 Score=149.01 Aligned_cols=65 Identities=32% Similarity=0.671 Sum_probs=62.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHH
Q 025351 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAED 98 (254)
Q Consensus 34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED 98 (254)
+.+++|+||+|||++|+++|.+||..+|..||..|++|+++||+.||.++|+|.+++++||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 56788999999999999999999988999999999999999999999999999999999999998
No 10
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.78 E-value=5.8e-20 Score=146.89 Aligned_cols=91 Identities=25% Similarity=0.408 Sum_probs=84.2
Q ss_pred CCcCccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccCC-----CCCCCC-CC
Q 025351 24 NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQLS-----PSVAHR-PF 93 (254)
Q Consensus 24 ~~k~r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L~-----p~~~~~-~W 93 (254)
++|.++....+.+++++||+|||++|+.+|++||..+|..|++.+ ++||..+|++||+++|. |.++++ +|
T Consensus 3 ~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~ 82 (121)
T 2juh_A 3 NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPV 82 (121)
T ss_dssp CCCCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCC
T ss_pred cccCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCC
Confidence 456666777889999999999999999999999988999999984 89999999999999997 999999 99
Q ss_pred ChHHHHHHHHHHHhcCCChhh
Q 025351 94 SPAEDDTILAAHARFGNRWAT 114 (254)
Q Consensus 94 T~EED~~Ll~~v~~~G~~W~~ 114 (254)
+++|+..|+.+++.+||+|.+
T Consensus 83 p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 83 PQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHccchhc
Confidence 999999999999999999987
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.5e-19 Score=158.65 Aligned_cols=105 Identities=29% Similarity=0.431 Sum_probs=92.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccCChhhhhhhccccCCCCCC-------------------
Q 025351 34 PERIKGPWSAEEDRILTRLVERYGPRN-----WSLISRYIKGRSGKSCRLRWCNQLSPSVA------------------- 89 (254)
Q Consensus 34 p~~~kg~WT~eED~~L~~lV~~~g~~n-----W~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~------------------- 89 (254)
+..++++||+|||++|+++|.+||... |..||+.|||||+.||+.||.++|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 356788999999999999999998642 99999999999999999999999999986
Q ss_pred ----------CCCCChHHHHHHHHHHHh-c--------------------------------------------------
Q 025351 90 ----------HRPFSPAEDDTILAAHAR-F-------------------------------------------------- 108 (254)
Q Consensus 90 ----------~~~WT~EED~~Ll~~v~~-~-------------------------------------------------- 108 (254)
+..||.+||-.|+..+.+ |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999876 2
Q ss_pred ---CC----ChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 109 ---GN----RWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 109 ---G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
|. .|..||+.+|+||.+++|+||+..|+..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999888765
No 12
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.77 E-value=7.1e-19 Score=140.76 Aligned_cols=87 Identities=23% Similarity=0.399 Sum_probs=78.7
Q ss_pred CcCccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccC-----CCCCCCCCCCh
Q 025351 25 NKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQL-----SPSVAHRPFSP 95 (254)
Q Consensus 25 ~k~r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L-----~p~~~~~~WT~ 95 (254)
.|.+.......+++++||+|||+.|+++|++||.++|..|++.+ ++||..||++||.+++ +|.++++.|++
T Consensus 18 ~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p 97 (122)
T 2roh_A 18 SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVP 97 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCC
T ss_pred ccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCC
Confidence 44445556777889999999999999999999998999999874 8999999999999999 89999999999
Q ss_pred HH-HHHHHHHHHhcCCC
Q 025351 96 AE-DDTILAAHARFGNR 111 (254)
Q Consensus 96 EE-D~~Ll~~v~~~G~~ 111 (254)
+| +..|+.+++.+||+
T Consensus 98 ~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 98 QELLDRVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 99 89999999999985
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=129.40 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=48.5
Q ss_pred hhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 76 CRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 76 cr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..-||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||++|||+||+. |++.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence 45689999999999999999999999999999999999999999 9999999999974 55544
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-18 Score=122.11 Aligned_cols=57 Identities=28% Similarity=0.627 Sum_probs=53.9
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCC
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVA 89 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~ 89 (254)
.|.+++++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 467889999999999999999999987899999999999999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.72 E-value=2.6e-18 Score=117.65 Aligned_cols=52 Identities=56% Similarity=1.193 Sum_probs=49.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS 87 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~ 87 (254)
+++|+||+|||++|+++|.+||..+|..||+.|++||++||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999999999878999999999999999999999999985
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.71 E-value=3.6e-18 Score=123.63 Aligned_cols=64 Identities=27% Similarity=0.377 Sum_probs=58.9
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCCCCCCCCCCC
Q 025351 31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLSPSVAHRPFS 94 (254)
Q Consensus 31 ~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~p~~~~~~WT 94 (254)
..++.+.+++||+|||++|+.+|++||..+|..||..|+ +||+.||+.||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 345677899999999999999999999889999999999 9999999999999999999988764
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=120.40 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=59.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCCh
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~ 148 (254)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+++.+|+.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 4678999999999999999999999 799999999999999999999999999999988765543
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=119.62 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351 83 QLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHP 143 (254)
Q Consensus 83 ~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~ 143 (254)
+|+|.+++++||+|||++|+++++.||++|..||. |+|||+.||++||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999877654
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.70 E-value=4.7e-18 Score=116.31 Aligned_cols=52 Identities=37% Similarity=0.786 Sum_probs=48.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS 87 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~ 87 (254)
+++++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999878999999999999999999999999984
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=4.2e-17 Score=119.01 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=55.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351 84 LSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 84 L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
++|.+++++||+|||++|++++.+||++|..||.+|+|||+.||++||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998766
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.5e-17 Score=114.63 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=52.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999998754
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1.4e-16 Score=108.95 Aligned_cols=50 Identities=26% Similarity=0.558 Sum_probs=46.5
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46889999999999999999998 899999999999999999999999976
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.65 E-value=3.3e-16 Score=125.74 Aligned_cols=77 Identities=22% Similarity=0.492 Sum_probs=70.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~ 163 (254)
.+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||+++|.+...+.+ |+++|+..|++++..+|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~--WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTP--WTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSC--CCHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccccc--CCHHHHHHHHHHHHHHCc
Confidence 45678999999999999999999999999999999999999999999999999887764 999999999999998874
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.64 E-value=3.9e-16 Score=121.10 Aligned_cols=74 Identities=19% Similarity=0.526 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351 88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~ 163 (254)
+.+++||+|||++|+++|..||. +|..||..|+|||+.||++||.++|.+...+.+ |+++|+..|++++..+|.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~--Wt~eEd~~L~~~~~~~G~ 76 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS--WTEEEDRIIYQAHKRLGN 76 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCC--CCHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccC--CCHHHHHHHHHHHHHhCC
Confidence 67899999999999999999996 799999999999999999999999999887664 889999999999988763
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=4.9e-17 Score=116.37 Aligned_cols=54 Identities=26% Similarity=0.482 Sum_probs=48.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCCCCCC
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLSPSVA 89 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~p~~~ 89 (254)
.+|++||+|||++|+++|++||..+|..||+.++ +||+.||++||.+++.|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 3578999999999999999999889999999865 99999999999999988764
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=8.2e-17 Score=113.55 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=50.5
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS 87 (254)
Q Consensus 34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~ 87 (254)
+.+.+++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 467789999999999999999999889999999999999999999999998765
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=2.6e-16 Score=107.65 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=47.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 699999999999999999999999976
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=6.9e-16 Score=111.56 Aligned_cols=61 Identities=16% Similarity=0.325 Sum_probs=55.9
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhcccccCCC
Q 025351 83 QLSPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRRTREHP 143 (254)
Q Consensus 83 ~L~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~~~~~ 143 (254)
...+...+++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 346778899999999999999999999 69999999999 99999999999999999887653
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=4.9e-16 Score=109.54 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=50.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
.+.+.+++||+|||++|+++|..|| ++|..||.+|+|||+.||++||+++|...
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678899999999999999999999 79999999999999999999999998764
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.61 E-value=5.7e-16 Score=106.45 Aligned_cols=50 Identities=20% Similarity=0.441 Sum_probs=46.4
Q ss_pred CCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhccc
Q 025351 89 AHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~ 138 (254)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998753
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.61 E-value=1.2e-15 Score=119.01 Aligned_cols=72 Identities=22% Similarity=0.446 Sum_probs=66.6
Q ss_pred CCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351 90 HRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~ 163 (254)
+++||+|||++|+++|..||. +|..||..|+|||+.||+.||.++|.+.+.+.+ |+++|+..|++++..+|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~--WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDP--WSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCC--CCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccc--cCHHHHHHHHHHHHHhCc
Confidence 579999999999999999996 899999999999999999999999999887654 889999999999998874
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-17 Score=115.96 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=54.8
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCC
Q 025351 31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP 92 (254)
Q Consensus 31 ~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~ 92 (254)
.++|.+++++||+|||++|+++|+.||. +|..||+ +++||+.||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 3678999999999999999999999996 7999999 8899999999999999998776553
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=2.2e-16 Score=108.52 Aligned_cols=49 Identities=33% Similarity=0.492 Sum_probs=46.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCC
Q 025351 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLS 85 (254)
Q Consensus 37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~ 85 (254)
++++||+|||++|+.+|.+||..+|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999999889999999999 9999999999998764
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.60 E-value=2e-15 Score=121.77 Aligned_cols=72 Identities=25% Similarity=0.507 Sum_probs=67.3
Q ss_pred CCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351 90 HRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD 163 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~ 163 (254)
+++||+|||++|+++|..|| ++|..||..|+|||+.||+.||.++|.+...+.+ |+++|+..|++++..+|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~--Wt~eEd~~L~~~~~~~G~ 74 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHA--WTPEEDETIFRNYLKLGS 74 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSC--CCHHHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCC--CCHHHHHHHHHHHHHHCc
Confidence 68999999999999999999 6899999999999999999999999999887764 899999999999999874
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=5e-16 Score=108.88 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=46.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccC
Q 025351 35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQL 84 (254)
Q Consensus 35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L 84 (254)
.+.+++||+|||++|+++|++||..+|..||+.|+ +||+.||+.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 35578999999999999999999889999999999 999999999999865
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-16 Score=114.98 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=55.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccccCChhhhhhhccccCCCCCCCCC
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGP-----RNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP 92 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~-----~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~ 92 (254)
+|...+++||+|||++|+++|.+||. .+|..||+.|++||..||+.||+++|.+.++.+-
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57888999999999999999999996 6899999999999999999999999988777654
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=2.4e-15 Score=107.52 Aligned_cols=52 Identities=21% Similarity=0.512 Sum_probs=47.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhcccc
Q 025351 88 VAHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~ 139 (254)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++|+.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4678999999999999999999 58999999865 9999999999999998765
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=110.85 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=53.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcC------CChhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFG------NRWATIARLLPGRTDNAVKNHWNSTLKRRTREH 142 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G------~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~ 142 (254)
+|.+.+++||+|||++|++++..|| ++|..||.+|+|||+.||++||+++|++..+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998876554
No 39
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=6.2e-16 Score=112.76 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=54.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChH
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~E 96 (254)
.|.+++++||+|||++|+++|.+||. +|..||+.|++||..||+.||.++|.+.++. .++++
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~ 65 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE 65 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 56788999999999999999999996 8999999999999999999999998876665 44433
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=6.1e-15 Score=103.30 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=46.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC-CCCHHHHHHHHHHhh
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLP-GRTDNAVKNHWNSTL 135 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~-gRT~~q~k~Rw~~~l 135 (254)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456688999999999999999999 89999999999 999999999998765
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.29 E-value=6.5e-16 Score=117.30 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=54.1
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 82 NQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 82 ~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..++|.+.+++||+|||++|+++|..||++|..||.+|+|||++||++||++++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3567899999999999999999999999999999999999999999999999988754
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.51 E-value=1e-14 Score=109.45 Aligned_cols=69 Identities=26% Similarity=0.392 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cccCChhhhhhhccccC-----CCCCCCC-CCChHHHHHHHHHHHh
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRWCNQL-----SPSVAHR-PFSPAEDDTILAAHAR 107 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~----l~~Rs~~qcr~Rw~~~L-----~p~~~~~-~WT~EED~~Ll~~v~~ 107 (254)
++||+|||++|+.+|++||.++|..|++. |++||..+|++||++++ +|.++++ +..++....++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999985 89999999999999987 6877666 7777888889998864
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=107.59 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=49.2
Q ss_pred cccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351 29 RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ 83 (254)
Q Consensus 29 ~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~ 83 (254)
.........+++||+|||++|+++|++|| .+|..||+.|++||..||+.||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 33456677789999999999999999999 7899999999999999999999987
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=106.66 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=47.7
Q ss_pred ccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCC
Q 025351 28 RRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVA 89 (254)
Q Consensus 28 r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~ 89 (254)
..+..+|++++|+||+|||++|+++|.+||.+ |..||+.| |||+.||+.||.. |.....
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 35677999999999999999999999999965 99999999 9999999999974 544433
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.49 E-value=1.4e-14 Score=113.09 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=68.3
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccC-----CCCCCCCCCChHHHHH-H
Q 025351 32 HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQL-----SPSVAHRPFSPAEDDT-I 101 (254)
Q Consensus 32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L-----~p~~~~~~WT~EED~~-L 101 (254)
....+++++||+|||++|+.+|++||..+|..|++.+ ++||..+|++||.+++ +|.++++.-+|+|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3456778999999999999999999988999999965 8999999999999998 7999999888888665 8
Q ss_pred HHHHHhcCC
Q 025351 102 LAAHARFGN 110 (254)
Q Consensus 102 l~~v~~~G~ 110 (254)
+++++.+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.46 E-value=4.8e-14 Score=112.59 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=65.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhc-----ccccCCCCCCChhHHHH
Q 025351 84 LSPSVAHRPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLK-----RRTREHPVQMQPHQQQQ 153 (254)
Q Consensus 84 L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk-----~~~~~~~~~~~~~e~~~ 153 (254)
+.+...+++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ +..++ ++.+.+++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~kr-g~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR-GEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCC-CSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccC-CCCCCHHHHHH
Confidence 556788999999999999999999997 99999997 489999999999999998 55444 56777777777
Q ss_pred HHHHhhcCC
Q 025351 154 LMDSVDNGG 162 (254)
Q Consensus 154 L~~~~~~~~ 162 (254)
++.+....+
T Consensus 90 v~~~h~~~g 98 (121)
T 2juh_A 90 VLAAHAYWS 98 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777666544
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.45 E-value=8e-14 Score=102.13 Aligned_cols=52 Identities=15% Similarity=0.384 Sum_probs=47.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+...+++||++||.+|+++++.|| ++|.+||.+|||||..||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6899999999999999999999887754
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=6.3e-14 Score=102.71 Aligned_cols=55 Identities=20% Similarity=0.540 Sum_probs=49.2
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccCC
Q 025351 31 THKPERIKGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 31 ~~~p~~~kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
..++...+++||++||++|+.+|.+|| ..+|.+||+.|||||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455677899999999999999999999 3579999999999999999999987654
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=101.83 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=44.7
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHh
Q 025351 87 SVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNST 134 (254)
Q Consensus 87 ~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~ 134 (254)
...+++||+|||.+|++++.+||++|.+||.+|++||+.||++||+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999655
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=1.2e-12 Score=98.09 Aligned_cols=47 Identities=30% Similarity=0.580 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhcc
Q 025351 91 RPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 91 ~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~ 137 (254)
++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999997 99999995 8999999999999999963
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.06 E-value=5.5e-14 Score=106.62 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=48.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
.|.+.+|+||+|||++|+.+|.+||. +|..||..|++||..||+.||.++|.
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 45678899999999999999999996 79999999999999999999998875
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=1.2e-12 Score=114.97 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=49.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFGNR------WATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G~~------W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
+.+.+++||+|||+.|+++|.+||++ |..||++|+|||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35788999999999999999999885 99999999999999999999999999875
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=1.1e-12 Score=92.75 Aligned_cols=51 Identities=16% Similarity=0.386 Sum_probs=46.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCChhhhh---hcCCCCCHHHHHHHHHHhhccc
Q 025351 88 VAHRPFSPAEDDTILAAHARFGNRWATIA---RLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G~~W~~IA---~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
-.+.+||+|||+.|++.|++||.+|.+|+ ..|++||..+|++||+++.|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5778999999999999888764
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=1.4e-12 Score=101.78 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=48.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcC----CCCCHHHHHHHHHHhhccc
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFGN-RWATIARLL----PGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l----~gRT~~q~k~Rw~~~lk~~ 138 (254)
+...+++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4577899999999999999999997 999999965 8999999999999999743
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.32 E-value=2.2e-12 Score=103.08 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=59.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhc-----ccccCCCCCCChhH-HHH
Q 025351 85 SPSVAHRPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLK-----RRTREHPVQMQPHQ-QQQ 153 (254)
Q Consensus 85 ~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk-----~~~~~~~~~~~~~e-~~~ 153 (254)
.....+++||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++ +..++ ..+.+++ ...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr--~~~~p~e~~~~ 103 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRR--GAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCC--CSSCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccC--CCCCCHHHHHH
Confidence 34557889999999999999999997 99999996 489999999999999995 44444 2344455 466
Q ss_pred HHHHhhcCCC
Q 025351 154 LMDSVDNGGD 163 (254)
Q Consensus 154 L~~~~~~~~~ 163 (254)
++.+....|+
T Consensus 104 v~~~h~~~g~ 113 (122)
T 2roh_A 104 VLAAQAYWSV 113 (122)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 6666555543
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.23 E-value=7e-12 Score=95.84 Aligned_cols=49 Identities=35% Similarity=0.644 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 89 AHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
..++||+|||.+|+++++.|| ++|.+||..|||||..+|++||+.+++.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 6799999999999999999999887654
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.10 E-value=1.6e-11 Score=93.80 Aligned_cols=47 Identities=26% Similarity=0.635 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccC
Q 025351 38 KGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQL 84 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L 84 (254)
+++||+|||++|.+++.+|+ ...|..||+.|||||.+||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46799999999999999997 456999999999999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=81.54 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
...+||+||+.++++++..||++|..||..|++||..+|+.+|....|.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 4569999999999999999999999999999999999999999765543
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.97 E-value=2.6e-10 Score=80.51 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=43.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccccCChhhhhhhccccCC
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLIS---RYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia---~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
.++.+||+|||+.|+++|++||. +|..|+ ..+++||..++++||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 35688999999999999999996 899999 57799999999999987543
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.3e-10 Score=77.78 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=42.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ 83 (254)
Q Consensus 37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~ 83 (254)
..++||+||++++.+++.+|| ++|..||..||+||..||..+|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 457899999999999999999 6899999999999999999998654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=2.4e-09 Score=78.03 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 87 SVAHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 87 ~~~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
....++||.|||.+|.++++.|+ ++|..||..| |||..+|++||+.+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45677999999999999999997 5799999998 999999999998776654
No 62
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=82.15 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=55.9
Q ss_pred hhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcC-----CCCCHHHHHHHHHHhhcccccCC
Q 025351 75 SCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLL-----PGRTDNAVKNHWNSTLKRRTREH 142 (254)
Q Consensus 75 qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l-----~gRT~~q~k~Rw~~~lk~~~~~~ 142 (254)
=+.++|.++|.+ .+||.||+..|++++.+||.+|..|+..+ ++||..+||+||..+.++.....
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467888888876 79999999999999999999999999988 58999999999988877655433
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.84 E-value=3.1e-09 Score=92.61 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=45.8
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351 89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~ 138 (254)
...+||+||+.++++++..||++|..||+.+++||..||+++|+++.++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45699999999999999999999999999999999999999998776653
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.75 E-value=4.9e-09 Score=100.53 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
..||+||-.++++++.+||.+|..||..+..||..||+++|.++.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999644333
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=3.8e-08 Score=71.80 Aligned_cols=53 Identities=11% Similarity=0.282 Sum_probs=45.9
Q ss_pred CCCCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351 89 AHRPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
....||.+|+.+|.++++.|+. +|..||..++|||..+|+.||..+++.+...
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence 3458999999999999999984 5999999999999999999998876654433
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.64 E-value=8.7e-09 Score=75.05 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=41.3
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccCC
Q 025351 38 KGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
.+.||.|||++|.+++.+|+ +..|.+||..| |||..+|+.||..+..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45699999999999999997 34599999998 8999999999987543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.62 E-value=3.7e-08 Score=69.02 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=42.8
Q ss_pred CCCCChHHHHHHHHHHHhc--------CCC-hhhhhh-cCCCCCHHHHHHHHHHhhc
Q 025351 90 HRPFSPAEDDTILAAHARF--------GNR-WATIAR-LLPGRTDNAVKNHWNSTLK 136 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~--------G~~-W~~IA~-~l~gRT~~q~k~Rw~~~lk 136 (254)
+.+||+|||..|++.|+++ |+. |..|++ .++++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 654 999999 8999999999999988775
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.52 E-value=3.7e-08 Score=85.87 Aligned_cols=49 Identities=22% Similarity=0.438 Sum_probs=45.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
...++||+||++++++++.+|| ++|..||+.|++||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999 689999999999999999999987653
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=3.2e-08 Score=69.33 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccCChhhhhhhccccCC
Q 025351 38 KGPWSAEEDRILTRLVERY--------GPRNWSLISR-YIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~--------g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~~L~ 85 (254)
|.+||+|||++|+..|.+| |..-|..+++ .++.+|..+||+||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 7999999999999998774
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=4.8e-08 Score=71.25 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCccccccccccCChhhhhhhccccCC
Q 025351 39 GPWSAEEDRILTRLVERYGP---RNWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
..||.+|+++|.+++..|+. ..|..||..|++||..+|+.||..++.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45999999999999999974 469999999999999999999987754
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.37 E-value=6.4e-07 Score=81.54 Aligned_cols=101 Identities=13% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccc----c--C----------------------------
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN----Q--L---------------------------- 84 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~----~--L---------------------------- 84 (254)
+.||..+...++.++.+||..+|..||..|+++|...++..+.- + |
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999998766432110 0 0
Q ss_pred ----------------CCCCCCCCCChHHHHHHHHHHHhcCC----Chhhhhh------------cCCCCCHHHHHHHHH
Q 025351 85 ----------------SPSVAHRPFSPAEDDTILAAHARFGN----RWATIAR------------LLPGRTDNAVKNHWN 132 (254)
Q Consensus 85 ----------------~p~~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~------------~l~gRT~~q~k~Rw~ 132 (254)
.+..+...||++||..||-++.+||- .|..|.. .|..||+.+|..|-+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 12234468999999999999999996 5999962 446899999999999
Q ss_pred Hhhcccc
Q 025351 133 STLKRRT 139 (254)
Q Consensus 133 ~~lk~~~ 139 (254)
.+++-..
T Consensus 271 tLi~~ie 277 (304)
T 1ofc_X 271 TLITLIE 277 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887543
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.1e-06 Score=60.61 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=44.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHHh
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFGNRWATIAR-LLPGRTDNAVKNHWNST 134 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~~ 134 (254)
|.+...+||+||-.+..+++..||.+|..|++ .|++||..+|...|...
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56778899999999999999999999999999 59999999999888543
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.19 E-value=5.2e-07 Score=65.58 Aligned_cols=42 Identities=31% Similarity=0.537 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHH
Q 025351 90 HRPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHW 131 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw 131 (254)
..+||.+|+++|..+++.|+. +|.+||..+||||..+|+.+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 458999999999999999985 699999999999999999998
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.16 E-value=1.8e-06 Score=65.03 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351 92 PFSPAEDDTILAAHARFGN---RWATIARLLPGRTDNAVKNHWNSTLK 136 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk 136 (254)
-||.|||..||.++.+-|. .|+.||+.|.+|+++||++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7999999999999999986 69999999988999999999955443
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.09 E-value=1.1e-06 Score=63.87 Aligned_cols=43 Identities=19% Similarity=0.492 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---CccccccccccCChhhhhhhcc
Q 025351 39 GPWSAEEDRILTRLVERYGPR---NWSLISRYIKGRSGKSCRLRWC 81 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~---nW~~Ia~~l~~Rs~~qcr~Rw~ 81 (254)
..||.+|+++|.+++.+|... .|.+||..|||||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 359999999999999999642 5999999999999999999985
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.35 E-value=4.7e-07 Score=64.72 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 92 PFSPAEDDTILAAHARFGN---RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
-||.|||..||..+.+-|. .|+.||..| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999997 699999999 99999999999777653
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.4e-06 Score=59.58 Aligned_cols=48 Identities=15% Similarity=0.330 Sum_probs=41.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccCChhhhhhhccc
Q 025351 34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISR-YIKGRSGKSCRLRWCN 82 (254)
Q Consensus 34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~ 82 (254)
|......||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 455567899999999999999999 58999999 6999999999877643
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.83 E-value=3.3e-05 Score=55.58 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 025351 89 AHRPFSPAEDDTILAAHARFGNRWATIAR-LLPGRTDNAVKNHWNS 133 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~ 133 (254)
...+||+||-.+..+++..||.+|..|++ .|++||..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34589999999999999999999999999 5999999999998863
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.79 E-value=3.5e-05 Score=58.59 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHh
Q 025351 90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNST 134 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~ 134 (254)
...||+||.++..+++..||.+|..||..|++||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988543
No 80
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.77 E-value=1.2e-05 Score=77.18 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=43.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351 35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ 83 (254)
Q Consensus 35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~ 83 (254)
.....+||.+|-+++++++.+|| +||..||+.|++||..||+.+|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35568999999999999999999 6899999999999999999998754
No 81
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.73 E-value=3.3e-05 Score=58.62 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHhcCCChhhhhhcCC-----CCCHHHHHHHHHHhhccccc
Q 025351 91 RPFSPAEDDTILAAHARFGNRWATIARLLP-----GRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~-----gRT~~q~k~Rw~~~lk~~~~ 140 (254)
..||.||...|++++.+|+-+|..|+..+. .||..++|.||..+.++...
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998763 79999999999988777544
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.60 E-value=2.5e-05 Score=59.32 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccc-----ccCChhhhhhhcccc
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISRYI-----KGRSGKSCRLRWCNQ 83 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l-----~~Rs~~qcr~Rw~~~ 83 (254)
.+||.||+..|.+|+++|+.+ |..|+..+ ++||..+++.||..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 789999999999999999976 99999998 589999999999764
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=3.3e-05 Score=55.59 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccCChhhhhhhccc
Q 025351 38 KGPWSAEEDRILTRLVERYGPRNWSLISR-YIKGRSGKSCRLRWCN 82 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~ 82 (254)
...||++|-++....+.+|| +||..|++ .|++|+..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35699999999999999999 58999999 6999999999877653
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=3e-05 Score=58.96 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcc
Q 025351 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWC 81 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~ 81 (254)
...||+||-+++.+.+..|| ++|.+|+..|++||..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence 46799999999999999999 68999999999999999987764
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.49 E-value=0.00017 Score=61.40 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhC--CCCccccccc--cccCChhhhhhhccc----------------------------
Q 025351 35 ERIKGPWSAEEDRILTRLVERYG--PRNWSLISRY--IKGRSGKSCRLRWCN---------------------------- 82 (254)
Q Consensus 35 ~~~kg~WT~eED~~L~~lV~~~g--~~nW~~Ia~~--l~~Rs~~qcr~Rw~~---------------------------- 82 (254)
.-....||..|-..|++++.+|| ...|..|+.. |.+++...+...+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG 83 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 33456799999999999999999 4569999854 567765332211000
Q ss_pred -----------------------cC---------------C-----CCCCCCCCChHHHHHHHHHHHhcC-CChhhhhh-
Q 025351 83 -----------------------QL---------------S-----PSVAHRPFSPAEDDTILAAHARFG-NRWATIAR- 117 (254)
Q Consensus 83 -----------------------~L---------------~-----p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~- 117 (254)
.| - +..-...||.+||..||..+.+|| .+|..|-.
T Consensus 84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 00 0 111123699999999999999999 78999955
Q ss_pred -c--C--------CC--CCHHHHHHHHHHhhcc
Q 025351 118 -L--L--------PG--RTDNAVKNHWNSTLKR 137 (254)
Q Consensus 118 -~--l--------~g--RT~~q~k~Rw~~~lk~ 137 (254)
. | .. +++..|..|-..+|+-
T Consensus 164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 1 1 12 4566789998777664
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.45 E-value=0.00025 Score=66.08 Aligned_cols=102 Identities=23% Similarity=0.362 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccC---------------------------------
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQL--------------------------------- 84 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L--------------------------------- 84 (254)
+.||.-+=..++.++.+||..+-..||..|. +++...++. |.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999989999999997 888766552 21111
Q ss_pred ---------C----------CC-CCCCCCChHHHHHHHHHHHhcCC----Chhhhhhc------------CCCCCHHHHH
Q 025351 85 ---------S----------PS-VAHRPFSPAEDDTILAAHARFGN----RWATIARL------------LPGRTDNAVK 128 (254)
Q Consensus 85 ---------~----------p~-~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~------------l~gRT~~q~k 128 (254)
+ +. .+...||++||..||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 11 13458999999999999999984 59999432 4679999999
Q ss_pred HHHHHhhcccccC
Q 025351 129 NHWNSTLKRRTRE 141 (254)
Q Consensus 129 ~Rw~~~lk~~~~~ 141 (254)
.|.+.+++-..+.
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9998888765444
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.12 E-value=0.00026 Score=52.39 Aligned_cols=48 Identities=15% Similarity=0.409 Sum_probs=39.3
Q ss_pred CCCCChHHHHHHHHHHHhcCC----------ChhhhhhcCC----CCCHHHHHHHHHHhhcc
Q 025351 90 HRPFSPAEDDTILAAHARFGN----------RWATIARLLP----GRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~----------~W~~IA~~l~----gRT~~q~k~Rw~~~lk~ 137 (254)
...||.+|...||+++.++.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999976321 4999999762 69999999999777665
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.09 E-value=9.7e-05 Score=52.76 Aligned_cols=46 Identities=13% Similarity=0.398 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CccccccccccCChhhhhhhccccCC
Q 025351 39 GPWSAEEDRILTRLVERYGPR--NWSLISRYIKGRSGKSCRLRWCNQLS 85 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~--nW~~Ia~~l~~Rs~~qcr~Rw~~~L~ 85 (254)
-.||.|||..|+..+++-|.. -|..||+.| +|++.|+..||...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 469999999999999999872 499999999 8999999999987653
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.99 E-value=0.00013 Score=53.98 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=38.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCC------C---Cccccccccc----cCChhhhhhhccccC
Q 025351 38 KGPWSAEEDRILTRLVERYGP------R---NWSLISRYIK----GRSGKSCRLRWCNQL 84 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g~------~---nW~~Ia~~l~----~Rs~~qcr~Rw~~~L 84 (254)
...||.+|..+|+.+...+.. . .|..||..|. .||+.||+.+|.++.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 467999999999999986421 1 3999999883 699999999998754
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.97 E-value=0.0012 Score=49.62 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCC--CCccccccccccCChhhhhhhcccc
Q 025351 33 KPERIKGPWSAEEDRILTRLVERYGP--RNWSLISRYIKGRSGKSCRLRWCNQ 83 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L~~lV~~~g~--~nW~~Ia~~l~~Rs~~qcr~Rw~~~ 83 (254)
...-+---||.|||..|+..+++-|. .-|..||+.|.+|++.|+..||+.+
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 33444567999999999999999986 3599999999999999999999763
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.56 E-value=0.0058 Score=46.21 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc-----cCChhhhhhhcccc
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISRYIK-----GRSGKSCRLRWCNQ 83 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-----~Rs~~qcr~Rw~~~ 83 (254)
..||.||...|..|+++|..+ |.-|+.... .||..+.+.||..+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 579999999999999999976 999998763 69999999998764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.51 E-value=0.073 Score=37.46 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=40.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCC---hhhhhhcC--CCCCHHHHHHHHHHhh
Q 025351 88 VAHRPFSPAEDDTILAAHARFGNR---WATIARLL--PGRTDNAVKNHWNSTL 135 (254)
Q Consensus 88 ~~~~~WT~EED~~Ll~~v~~~G~~---W~~IA~~l--~gRT~~q~k~Rw~~~l 135 (254)
..+-.||+|..+..++|+..+|.. +..|-+.| +|.|..+|+.|.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999964 77888865 6899999999886543
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.37 E-value=0.097 Score=47.45 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=41.9
Q ss_pred CCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 90 HRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
.+.||..|...++.++..||. +|..||..|+|+|...|+..+....++
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 347999999999999999995 799999999999999997777655554
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.82 E-value=0.073 Score=37.45 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=37.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCC--cccccccc--ccCChhhhhhhcccc
Q 025351 36 RIKGPWSAEEDRILTRLVERYGPRN--WSLISRYI--KGRSGKSCRLRWCNQ 83 (254)
Q Consensus 36 ~~kg~WT~eED~~L~~lV~~~g~~n--W~~Ia~~l--~~Rs~~qcr~Rw~~~ 83 (254)
..+-.||+|.-+.+..+|++.|... +..|.+.| ++.|..++..|.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456799999999999999999432 67888776 578888888776554
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.57 E-value=0.09 Score=46.90 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 025351 39 GPWSAEEDRILTRLVERYGPRNWSLISR 66 (254)
Q Consensus 39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~ 66 (254)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999974
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.37 E-value=0.18 Score=42.39 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhcC---CChhhhhh--cCCCCCHHHHHHHHHHhhcc
Q 025351 87 SVAHRPFSPAEDDTILAAHARFG---NRWATIAR--LLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 87 ~~~~~~WT~EED~~Ll~~v~~~G---~~W~~IA~--~l~gRT~~q~k~Rw~~~lk~ 137 (254)
.-....||..|-..|++++.+|| .+|..|+. .|.++|...|+..+..++..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34556899999999999999999 47999986 47899999999877655543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.10 E-value=0.22 Score=44.40 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHHHHHhcC-CChhhhhh
Q 025351 91 RPFSPAEDDTILAAHARFG-NRWATIAR 117 (254)
Q Consensus 91 ~~WT~EED~~Ll~~v~~~G-~~W~~IA~ 117 (254)
..|+.+||..||..|.+|| +.|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3699999999999999999 68999965
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.16 E-value=0.67 Score=43.05 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=33.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcccccccc------------ccCChhhhhhhc
Q 025351 38 KGPWSAEEDRILTRLVERYGP---RNWSLISRYI------------KGRSGKSCRLRW 80 (254)
Q Consensus 38 kg~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l------------~~Rs~~qcr~Rw 80 (254)
+..||.+||..|+-++.+||. ++|..|-..+ ..||+..+..|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 457999999999999999999 8899996543 346666655554
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=72.00 E-value=4.3 Score=26.93 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+.+..++.++...|..+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777777889999999999 99999999888666554
No 100
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=69.05 E-value=7.7 Score=30.94 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCC--C---CHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHh
Q 025351 99 DTILAAHARFGN--------RWATIARLLPG--R---TDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSV 158 (254)
Q Consensus 99 ~~Ll~~v~~~G~--------~W~~IA~~l~g--R---T~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~ 158 (254)
-.|..+|..+|+ .|.+|+..|.- . ....++..|..+|-+--........+.+.+..++..
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~~ 139 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSN 139 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 357777777775 69999998732 1 256899999999887433333344555555555543
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.86 E-value=6 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHh----cCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 95 PAEDDTILAAHAR----FGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 95 ~EED~~Ll~~v~~----~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
++.+..++.+..- .|..|.+||..+ |-+...|+.+....+++-.
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3445556666554 578899999999 9999999998876665543
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.15 E-value=6.1 Score=26.49 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHHH----hcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 96 AEDDTILAAHA----RFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 96 EED~~Ll~~v~----~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
+.+..++.++. ..|..+.+||..+ |-+...|+.+....+++-.
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 44555565555 3577899999999 9999999999877766543
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.56 E-value=4.2 Score=31.16 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 100 TILAAHARFGN--------RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
.|..+|..+|+ .|..||..|.--....++..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57788888875 699999987444478999999888765
No 104
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=64.49 E-value=4.3 Score=33.43 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=23.3
Q ss_pred CCCCCcCCCCHHHHHHH--------HHHHHHhCCCCccccc
Q 025351 33 KPERIKGPWSAEEDRIL--------TRLVERYGPRNWSLIS 65 (254)
Q Consensus 33 ~p~~~kg~WT~eED~~L--------~~lV~~~g~~nW~~Ia 65 (254)
-|....|-||+|+|+.| .+|+++|| |..|.
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 46778899999999987 47888888 45444
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=61.43 E-value=8.8 Score=29.37 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCCCC----HHHHHHHHHHhhcc
Q 025351 99 DTILAAHARFGN--------RWATIARLLPGRT----DNAVKNHWNSTLKR 137 (254)
Q Consensus 99 ~~Ll~~v~~~G~--------~W~~IA~~l~gRT----~~q~k~Rw~~~lk~ 137 (254)
-.|..+|..+|+ .|..|+..|.--. ..++|..|..+|-+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777888875 6999999883222 56889999877765
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.59 E-value=10 Score=28.30 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCCCC----HHHHHHHHHHhhcc
Q 025351 99 DTILAAHARFGN--------RWATIARLLPGRT----DNAVKNHWNSTLKR 137 (254)
Q Consensus 99 ~~Ll~~v~~~G~--------~W~~IA~~l~gRT----~~q~k~Rw~~~lk~ 137 (254)
-.|..+|..+|+ .|..|+..|.--. ..+++..|..+|-+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777777775 6999999883322 46889999877754
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=58.53 E-value=6.3 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 100 TILAAHARFGN--------RWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
.|..+|.+.|+ .|..|+..|.--....++..|.++|-+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 47777777775 599999987444489999999888766
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.05 E-value=11 Score=26.74 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 95 ~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
++.+..++.++...|..-.+||..| |-+...|+.+....+++
T Consensus 39 ~~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 39 SAEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3455667777777888999999999 99999999988766554
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.65 E-value=12 Score=28.93 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCC----HHHHHHHHHHhhcc
Q 025351 100 TILAAHARFGN--------RWATIARLLPGRT----DNAVKNHWNSTLKR 137 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~gRT----~~q~k~Rw~~~lk~ 137 (254)
.|..+|.++|+ .|..|+..|.--+ ...+|..|.++|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 57777777775 6999999883221 35888989777665
No 110
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=55.96 E-value=12 Score=28.82 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=27.9
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCCCC----HHHHHHHHHHhhcc
Q 025351 100 TILAAHARFGN--------RWATIARLLPGRT----DNAVKNHWNSTLKR 137 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~gRT----~~q~k~Rw~~~lk~ 137 (254)
.|..+|..+|+ .|.+|+..|.--+ ...+|..|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777775 6999999883322 46889999877765
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.73 E-value=14 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCC--CC---CHHHHHHHHHHhhccc
Q 025351 99 DTILAAHARFGN--------RWATIARLLP--GR---TDNAVKNHWNSTLKRR 138 (254)
Q Consensus 99 ~~Ll~~v~~~G~--------~W~~IA~~l~--gR---T~~q~k~Rw~~~lk~~ 138 (254)
-.|..+|..+|+ .|..|+..|. .. ....+|..|..+|-+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 467778888885 6999999873 22 2578999999888764
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=51.83 E-value=22 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=40.7
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCC-C----CHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhc
Q 025351 100 TILAAHARFGN--------RWATIARLLPG-R----TDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDN 160 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~g-R----T~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~ 160 (254)
.|..+|.++|+ .|..||..|.- . ....++.+|..+|-+--. ..+++...|.+.|..
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~-----~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS-----LSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH-----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC-----cCHHHHhhHHHHHHH
Confidence 57778888875 69999998721 2 246889999888877543 445777888777654
No 113
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=47.90 E-value=20 Score=25.23 Aligned_cols=43 Identities=7% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHh----cCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 96 AEDDTILAAHAR----FGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 96 EED~~Ll~~v~~----~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
+.+..++.+..- .|..+.+||..+ |-+...|+.+....+++-.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 445555666554 567899999999 9999999998877666543
No 114
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=47.30 E-value=16 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=24.9
Q ss_pred hcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 107 RFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 107 ~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
..|....+||..+ |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3477899999999 99999999998776654
No 115
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=46.81 E-value=8.5 Score=28.19 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=25.7
Q ss_pred HHHHHHHhcCC--------ChhhhhhcCCC-C---CHHHHHHHHHHhhc
Q 025351 100 TILAAHARFGN--------RWATIARLLPG-R---TDNAVKNHWNSTLK 136 (254)
Q Consensus 100 ~Ll~~v~~~G~--------~W~~IA~~l~g-R---T~~q~k~Rw~~~lk 136 (254)
.|..+|...|+ .|.+|+..|.- . ...++|..|.++|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 46777777764 69999998732 1 25688888876654
No 116
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=46.48 E-value=12 Score=29.93 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHH
Q 025351 61 WSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILA 103 (254)
Q Consensus 61 W~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~ 103 (254)
-..||..+.|+|+.+||..|. +. ..||+||++.|.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 367888899999999999872 32 3699999987654
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.64 E-value=27 Score=23.47 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 93 FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 93 WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
+|+.|- .++.++ ..|....+||..+ |-+...|+.+....+++-.
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 445444 444555 6788899999999 8999999998877666543
No 118
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=45.44 E-value=24 Score=27.68 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=24.5
Q ss_pred hcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 107 RFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 107 ~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
..|....+||..+ |-+...|+++....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999988766554
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.02 E-value=21 Score=28.15 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351 96 AEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 96 EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
+-|..|+++..+.| -.|.+||+.+ |=+...|+.|++.+.+.....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45788999888776 4799999999 999999999998888777654
No 120
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.21 E-value=34 Score=25.52 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+.+..++.++...|....+||..+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566777777889999999999 99999999888665544
No 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.18 E-value=13 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCC--------ChhhhhhcCCC-C----CHHHHHHHHHHhhcc
Q 025351 99 DTILAAHARFGN--------RWATIARLLPG-R----TDNAVKNHWNSTLKR 137 (254)
Q Consensus 99 ~~Ll~~v~~~G~--------~W~~IA~~l~g-R----T~~q~k~Rw~~~lk~ 137 (254)
-.|..+|..+|+ .|.+|+..|.- . ...+++..|..+|-.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777777774 69999998732 1 246789999887765
No 122
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.97 E-value=27 Score=26.22 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.8
Q ss_pred HhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 106 ARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 106 ~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
...|....+||..| |-+...|+.+....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34577899999999 89999999988665544
No 123
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.40 E-value=41 Score=24.03 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=36.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
.....|+.|-+.|.- +. .|..-.+||..| |-+...|+++..+++++-.
T Consensus 26 ~~~~Lt~rE~~Vl~l-~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQE-VE-KGFTNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHH-HH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 344678877765544 44 788999999999 9999999999988776644
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.32 E-value=33 Score=22.59 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..+|+.|-+.|.. + ..|....+||..+ |-+...|+.+....+++-.
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 3567766655544 4 6678899999999 8899999998877665543
No 125
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.60 E-value=34 Score=24.51 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 92 PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++-..
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 466666555444 5 6788899999999 99999999988777665443
No 126
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.53 E-value=4.6 Score=30.94 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCccccccccccCChhhhhhhccccCCC
Q 025351 48 ILTRLVERYGP-------RNWSLISRYIKGRSGKSCRLRWCNQLSP 86 (254)
Q Consensus 48 ~L~~lV~~~g~-------~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p 86 (254)
.|..+|.+.|. +.|..|+..|.--.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57788887764 2499999988444467778888777754
No 127
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.22 E-value=37 Score=27.34 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+.+..++.++...|....+||..| |-+...|+.+....+++
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444555555678899999999 99999999888665544
No 128
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.13 E-value=34 Score=23.79 Aligned_cols=45 Identities=31% Similarity=0.322 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 92 PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..|+.|-+.|. ++ ..|..-.+||..+ |-+...|+.+....+++-.
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 46666655544 44 6788999999999 9999999998877666543
No 129
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.80 E-value=47 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 98 DDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 98 D~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
+..++.+ ...|..-.+||..+ |-+...|+.+....+++-..
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHCC
Confidence 3445555 35688899999999 99999999988777665443
No 130
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=34.02 E-value=19 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=27.3
Q ss_pred cccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHH
Q 025351 62 SLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILA 103 (254)
Q Consensus 62 ~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~ 103 (254)
..||..+.|+|+.+||..|. +. ..||+||++.|.+
T Consensus 120 ~~va~~i~gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 56888889999999999873 22 3599999987543
No 131
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.65 E-value=52 Score=21.70 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHH
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHW 131 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw 131 (254)
-|.+.|.++...+++++.+.|+.+ |=+...+..+-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 467788999999999999999988 66666665543
No 132
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.44 E-value=65 Score=22.90 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHH
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHW 131 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw 131 (254)
-|...|.+++..+|++..+.|+.| |=+...+..+-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 467788999999999999999998 77777775544
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.25 E-value=69 Score=23.77 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH
Q 025351 93 FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKN 129 (254)
Q Consensus 93 WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~ 129 (254)
=|..=+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 356667778888888999999999999 777776644
No 134
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.32 E-value=41 Score=23.66 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351 92 PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~ 139 (254)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++-.
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 45666655544 44 5788999999999 9999999998877766544
No 135
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.85 E-value=43 Score=25.37 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH
Q 025351 98 DDTILAAHARFGNRWATIARLLPGRTDNAVKN 129 (254)
Q Consensus 98 D~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~ 129 (254)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777788999999999999 777766543
No 136
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=31.54 E-value=19 Score=29.11 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=29.0
Q ss_pred ccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChh
Q 025351 61 WSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWA 113 (254)
Q Consensus 61 W~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~ 113 (254)
-..||..+.|+|+.++|..|. +. ..||+||++.|. -.|.|.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I~-nd~t~eEe~~ir-----~en~W~ 166 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------IV-NDFTPEEEAAIR-----RENEWA 166 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------CC-CCCCHHHHHHHH-----TTC---
T ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHH-----Hhcccc
Confidence 567888899999999999773 32 259999998753 346675
No 137
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.34 E-value=79 Score=18.30 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHH
Q 025351 92 PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHW 131 (254)
Q Consensus 92 ~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw 131 (254)
..++++-..++.++ .-|....+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666677665 4577899999999 88888886644
No 138
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.16 E-value=56 Score=26.02 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351 95 PAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 95 ~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
.+-|..||.+..+.| ..+.+||+.+ |-+...|+.|.+.+.+.....
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 355778888888777 4799999999 899999999998887776654
No 139
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.98 E-value=48 Score=25.16 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=26.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHH
Q 025351 86 PSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVK 128 (254)
Q Consensus 86 p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k 128 (254)
+.+....=|.+ .|..+....|..|..+|+.| |=+..+|.
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 33344444444 45556788999999999998 76766653
No 140
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=30.23 E-value=65 Score=24.57 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 96 AEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 96 EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+.+....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44667888887776 4799999999 88999999999888766554
No 141
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=29.89 E-value=51 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCChhhhhhcCCCCCHHHHH
Q 025351 100 TILAAHARFGNRWATIARLLPGRTDNAVK 128 (254)
Q Consensus 100 ~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k 128 (254)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45556788999999999998 76666553
No 142
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.24 E-value=58 Score=24.34 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351 96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137 (254)
Q Consensus 96 EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~ 137 (254)
+.+..++.++...|..-.+||..+ |-+...|+.+....+++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344566666667889999999999 99999999888766544
No 143
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=28.01 E-value=22 Score=26.10 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC-------CCCCCCChHHHHHHH
Q 025351 46 DRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS-------VAHRPFSPAEDDTIL 102 (254)
Q Consensus 46 D~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~-------~~~~~WT~EED~~Ll 102 (254)
+.+|.+||+.|| |..++..+.-|.- ..+|. +++.||-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF---------~~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCF---------KKDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSST---------TSSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccC---------CCCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 678999999999 9999988753321 12343 345688777766554
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.01 E-value=78 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351 96 AEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141 (254)
Q Consensus 96 EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~ 141 (254)
+-|..|+.+....| -.+.+||+.+ |-+...|..|.+.+.+.....
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34667888887776 4799999999 899999999998887776654
No 145
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.08 E-value=73 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCChhhhhhcCCCCCHHHHHH
Q 025351 98 DDTILAAHARFGNRWATIARLLPGRTDNAVKN 129 (254)
Q Consensus 98 D~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~ 129 (254)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566677799999999999 767666643
No 146
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.96 E-value=62 Score=26.21 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCChhhhhhcCCCCCHHHHHH
Q 025351 99 DTILAAHARFGNRWATIARLLPGRTDNAVKN 129 (254)
Q Consensus 99 ~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~ 129 (254)
+.|+.+-++-|-.|.+||+.+ |++...+-.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vta 45 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTA 45 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHH
Confidence 577888888899999999999 899886643
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.47 E-value=1e+02 Score=22.38 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++-..
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 34678877766544 4 3688899999999 88999999988777766543
No 148
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.24 E-value=86 Score=22.26 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHH
Q 025351 95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNH 130 (254)
Q Consensus 95 ~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~R 130 (254)
.-|.+.|.++..+++.+..+.|+.| |=+...+..+
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 4466778899999999999999988 7776666544
No 149
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.07 E-value=1.1e+02 Score=23.63 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351 96 AEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140 (254)
Q Consensus 96 EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~ 140 (254)
+-|..|+.+....| -.+.+||+.+ |-+...|..|.+.+.+..+.
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44667888887776 4799999999 88999999999888776554
Done!