Query 025352
Match_columns 254
No_of_seqs 124 out of 1257
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 3.7E-65 8E-70 452.4 22.2 248 1-254 123-375 (375)
2 PTZ00466 actin-like protein; P 100.0 2.2E-64 4.7E-69 448.0 23.5 248 1-254 129-380 (380)
3 PTZ00281 actin; Provisional 100.0 7.7E-64 1.7E-68 444.8 21.2 248 1-254 124-376 (376)
4 KOG0676 Actin and related prot 100.0 2.7E-64 6E-69 435.8 14.8 246 1-254 122-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1E-62 2.2E-67 438.1 22.0 248 1-254 124-378 (378)
6 PF00022 Actin: Actin; InterP 100.0 2.9E-59 6.3E-64 418.7 17.9 248 1-254 117-393 (393)
7 smart00268 ACTIN Actin. ACTIN 100.0 8.7E-58 1.9E-62 406.5 22.1 248 1-254 118-373 (373)
8 PTZ00280 Actin-related protein 100.0 9.8E-58 2.1E-62 410.7 22.1 247 1-253 125-409 (414)
9 KOG0679 Actin-related protein 100.0 1.6E-57 3.5E-62 384.9 13.6 246 1-253 129-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 4.1E-55 8.8E-60 389.1 22.1 246 1-252 118-371 (371)
11 KOG0677 Actin-related protein 100.0 6.3E-53 1.4E-57 341.3 14.3 246 1-252 124-386 (389)
12 KOG0680 Actin-related protein 100.0 3.9E-51 8.5E-56 338.9 17.2 248 1-254 116-399 (400)
13 COG5277 Actin and related prot 100.0 2.1E-50 4.5E-55 360.8 19.0 248 1-254 129-444 (444)
14 KOG0678 Actin-related protein 100.0 3.7E-39 8E-44 268.2 5.7 245 1-251 129-407 (415)
15 KOG0681 Actin-related protein 100.0 1.1E-36 2.3E-41 267.6 14.1 247 1-253 139-639 (645)
16 KOG0797 Actin-related protein 100.0 5.8E-32 1.3E-36 236.4 11.9 250 1-253 250-614 (618)
17 PRK13930 rod shape-determining 99.9 6.7E-25 1.4E-29 192.7 8.4 198 1-227 122-327 (335)
18 TIGR00904 mreB cell shape dete 99.9 1.5E-24 3.2E-29 190.4 8.8 199 1-227 120-326 (333)
19 PRK13927 rod shape-determining 99.9 1.3E-23 2.8E-28 184.5 7.3 197 1-227 118-323 (334)
20 PRK13929 rod-share determining 99.9 3.6E-23 7.7E-28 181.6 8.9 193 2-225 121-323 (335)
21 PRK13928 rod shape-determining 99.9 4.4E-22 9.6E-27 174.8 6.9 197 2-227 118-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 2.4E-21 5.3E-26 167.6 10.7 195 3-227 117-320 (326)
23 COG1077 MreB Actin-like ATPase 99.6 9.2E-16 2E-20 129.4 7.3 196 3-226 125-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.6 2.1E-14 4.5E-19 120.2 9.7 154 3-224 85-238 (239)
25 PRK15080 ethanolamine utilizat 99.5 1.1E-13 2.3E-18 117.8 8.9 156 3-226 112-267 (267)
26 PRK09472 ftsA cell division pr 99.5 5.3E-14 1.2E-18 127.1 7.2 197 2-228 175-388 (420)
27 TIGR01174 ftsA cell division p 99.4 4.8E-13 1E-17 119.2 7.8 162 2-191 167-338 (371)
28 COG0849 ftsA Cell division ATP 99.4 5.9E-13 1.3E-17 118.5 8.3 197 3-228 175-380 (418)
29 CHL00094 dnaK heat shock prote 99.1 1.8E-10 3.8E-15 109.1 8.7 187 4-228 160-376 (621)
30 PTZ00400 DnaK-type molecular c 99.1 4.1E-10 8.9E-15 107.2 10.9 191 4-228 199-415 (663)
31 PTZ00186 heat shock 70 kDa pre 99.1 3.8E-10 8.2E-15 107.0 9.4 191 4-228 185-401 (657)
32 PRK01433 hscA chaperone protei 99.1 3.8E-10 8.2E-15 106.0 9.1 181 3-228 165-356 (595)
33 TIGR01991 HscA Fe-S protein as 99.0 2E-09 4.4E-14 101.5 11.4 189 3-228 153-360 (599)
34 TIGR02350 prok_dnaK chaperone 99.0 2.2E-09 4.9E-14 101.3 10.8 187 4-228 155-372 (595)
35 PLN03184 chloroplast Hsp70; Pr 99.0 1.2E-09 2.7E-14 104.1 9.0 187 4-228 197-413 (673)
36 TIGR01175 pilM type IV pilus a 99.0 4.8E-09 1E-13 92.7 12.2 143 2-191 152-306 (348)
37 PRK13410 molecular chaperone D 99.0 1.4E-09 3.1E-14 103.4 9.1 187 4-228 160-376 (668)
38 PRK00290 dnaK molecular chaper 99.0 2.6E-09 5.6E-14 101.4 10.8 188 3-228 157-374 (627)
39 PRK13411 molecular chaperone D 99.0 1.5E-09 3.2E-14 103.3 8.5 191 4-228 158-376 (653)
40 PRK05183 hscA chaperone protei 99.0 3.2E-09 6.9E-14 100.4 10.0 187 3-228 173-376 (616)
41 PRK13917 plasmid segregation p 98.9 3E-09 6.6E-14 93.7 8.2 173 5-228 151-336 (344)
42 PTZ00009 heat shock 70 kDa pro 98.9 1.2E-08 2.6E-13 97.2 11.6 188 3-228 164-381 (653)
43 PRK11678 putative chaperone; P 98.8 2.3E-08 5.1E-13 91.0 10.6 64 3-68 181-260 (450)
44 PF11104 PilM_2: Type IV pilus 98.8 2.6E-08 5.7E-13 87.8 9.4 119 26-191 180-298 (340)
45 PF00012 HSP70: Hsp70 protein; 98.8 5.8E-09 1.3E-13 98.6 5.0 190 3-228 159-376 (602)
46 COG4820 EutJ Ethanolamine util 98.7 1.4E-08 3.1E-13 80.7 4.2 135 2-191 116-250 (277)
47 TIGR03739 PRTRC_D PRTRC system 98.3 2.1E-06 4.6E-11 75.1 8.1 70 5-74 137-215 (320)
48 COG4972 PilM Tfp pilus assembl 98.3 6.5E-06 1.4E-10 70.4 9.4 117 28-191 195-311 (354)
49 COG0443 DnaK Molecular chapero 98.2 6.5E-06 1.4E-10 77.4 8.5 70 4-73 145-222 (579)
50 PF06406 StbA: StbA protein; 97.8 7.8E-05 1.7E-09 65.2 8.3 83 4-88 137-225 (318)
51 KOG0100 Molecular chaperones G 97.8 8.7E-05 1.9E-09 65.3 8.2 66 6-71 199-273 (663)
52 TIGR00241 CoA_E_activ CoA-subs 97.7 0.00046 1E-08 58.1 10.5 147 28-225 93-248 (248)
53 KOG0101 Molecular chaperones H 97.7 0.00022 4.7E-09 66.5 8.6 189 5-230 169-385 (620)
54 PRK10719 eutA reactivating fac 96.9 0.0073 1.6E-07 54.8 9.5 40 25-66 145-184 (475)
55 KOG0102 Molecular chaperones m 96.6 0.032 6.9E-07 51.2 11.2 169 6-195 187-381 (640)
56 COG1924 Activator of 2-hydroxy 96.1 0.068 1.5E-06 47.1 10.1 45 171-228 346-390 (396)
57 PF08841 DDR: Diol dehydratase 95.8 0.024 5.1E-07 48.0 5.7 168 4-191 107-299 (332)
58 PF14450 FtsA: Cell division p 95.5 0.063 1.4E-06 39.9 6.7 58 29-95 2-70 (120)
59 KOG0104 Molecular chaperones G 95.2 0.044 9.6E-07 52.1 6.1 69 5-73 184-275 (902)
60 TIGR02259 benz_CoA_red_A benzo 94.7 0.18 4E-06 45.0 8.3 51 167-226 381-432 (432)
61 KOG0103 Molecular chaperones H 93.2 0.83 1.8E-05 43.4 9.8 69 5-73 163-246 (727)
62 TIGR03286 methan_mark_15 putat 93.1 0.046 1E-06 48.9 1.5 48 167-227 355-402 (404)
63 TIGR03192 benz_CoA_bzdQ benzoy 93.0 0.059 1.3E-06 46.3 2.0 49 166-227 238-287 (293)
64 PF01968 Hydantoinase_A: Hydan 92.8 0.12 2.5E-06 44.7 3.5 29 22-50 73-101 (290)
65 TIGR02261 benz_CoA_red_D benzo 92.7 0.079 1.7E-06 44.9 2.3 50 169-226 213-262 (262)
66 PRK13317 pantothenate kinase; 91.4 0.19 4.1E-06 43.1 3.2 71 147-227 201-273 (277)
67 PF02541 Ppx-GppA: Ppx/GppA ph 91.0 0.5 1.1E-05 40.5 5.5 43 24-68 110-152 (285)
68 PF07318 DUF1464: Protein of u 90.4 1.5 3.3E-05 38.5 7.8 31 23-53 151-181 (343)
69 TIGR03123 one_C_unchar_1 proba 89.1 0.4 8.7E-06 41.8 3.3 29 23-51 125-153 (318)
70 PF06277 EutA: Ethanolamine ut 87.5 1.2 2.7E-05 40.7 5.4 51 26-78 143-204 (473)
71 COG1548 Predicted transcriptio 86.7 0.49 1.1E-05 39.8 2.2 23 25-47 129-151 (330)
72 COG2441 Predicted butyrate kin 85.4 0.79 1.7E-05 39.0 2.9 154 26-228 163-332 (374)
73 PRK11031 guanosine pentaphosph 81.0 2.5 5.3E-05 39.4 4.6 40 26-67 132-171 (496)
74 TIGR03706 exo_poly_only exopol 80.1 2.2 4.7E-05 37.0 3.7 41 26-68 125-165 (300)
75 PF01869 BcrAD_BadFG: BadF/Bad 79.4 0.38 8.3E-06 40.8 -1.2 47 171-226 224-271 (271)
76 COG0145 HyuA N-methylhydantoin 71.2 4.1 8.8E-05 39.4 3.3 46 6-51 252-303 (674)
77 PRK10854 exopolyphosphatase; P 69.6 5.5 0.00012 37.3 3.7 39 26-66 137-175 (513)
78 PF03702 UPF0075: Uncharacteri 69.3 3.4 7.4E-05 36.8 2.2 24 168-191 285-308 (364)
79 KOG2708 Predicted metalloprote 69.1 32 0.00068 28.8 7.5 50 24-74 122-171 (336)
80 COG0248 GppA Exopolyphosphatas 66.8 5.3 0.00011 37.2 3.0 42 25-68 128-169 (492)
81 PRK13310 N-acetyl-D-glucosamin 65.3 7.4 0.00016 33.5 3.5 51 170-226 248-300 (303)
82 PRK09557 fructokinase; Reviewe 62.1 11 0.00023 32.5 3.9 50 170-225 247-298 (301)
83 PF08735 DUF1786: Putative pyr 62.1 15 0.00033 31.0 4.6 39 11-49 145-190 (254)
84 PRK05082 N-acetylmannosamine k 61.4 11 0.00025 32.1 3.9 50 170-226 236-286 (291)
85 KOG2960 Protein involved in th 51.7 7 0.00015 32.2 0.9 82 162-252 70-155 (328)
86 TIGR00555 panK_eukar pantothen 51.3 15 0.00032 31.6 2.8 68 146-223 208-277 (279)
87 PRK09585 anmK anhydro-N-acetyl 49.6 14 0.0003 33.0 2.5 23 169-191 288-310 (365)
88 COG4819 EutA Ethanolamine util 48.7 15 0.00033 32.3 2.5 33 29-63 148-180 (473)
89 KOG1794 N-Acetylglucosamine ki 45.9 26 0.00056 30.3 3.4 76 146-230 242-319 (336)
90 PRK09698 D-allose kinase; Prov 43.0 38 0.00082 29.0 4.2 45 27-73 5-57 (302)
91 TIGR00744 ROK_glcA_fam ROK fam 41.5 33 0.00071 29.6 3.6 52 170-227 254-309 (318)
92 TIGR01319 glmL_fam conserved h 40.9 16 0.00035 33.5 1.6 24 26-49 249-272 (463)
93 PF09693 Phage_XkdX: Phage unc 36.6 18 0.0004 21.1 0.9 11 234-244 25-35 (40)
94 PF13941 MutL: MutL protein 34.2 26 0.00056 32.3 1.8 32 21-52 242-274 (457)
95 PRK13333 pantothenate kinase; 34.2 47 0.001 27.1 3.2 27 18-47 78-104 (206)
96 smart00732 YqgFc Likely ribonu 32.1 1.5E+02 0.0033 20.2 5.3 45 28-72 3-48 (99)
97 COG4012 Uncharacterized protei 32.0 92 0.002 26.7 4.5 40 10-49 207-250 (342)
98 TIGR01669 phage_XkdX phage unc 31.8 21 0.00046 21.5 0.6 11 234-244 30-40 (45)
99 PF02782 FGGY_C: FGGY family o 31.1 57 0.0012 25.7 3.2 47 168-228 150-196 (198)
100 COG1521 Pantothenate kinase ty 29.6 67 0.0015 27.1 3.4 20 27-47 123-142 (251)
101 TIGR00103 DNA_YbaB_EbfC DNA-bi 28.7 67 0.0015 23.0 2.9 48 134-183 55-102 (102)
102 PRK00976 hypothetical protein; 28.0 90 0.0019 27.5 4.0 34 17-51 140-173 (326)
103 TIGR03192 benz_CoA_bzdQ benzoy 26.4 1E+02 0.0022 26.7 4.1 47 27-75 33-82 (293)
104 COG4012 Uncharacterized protei 24.1 2.9E+02 0.0064 23.7 6.2 44 28-72 3-46 (342)
105 TIGR00744 ROK_glcA_fam ROK fam 23.6 1.7E+02 0.0036 25.1 5.0 47 3-51 95-148 (318)
106 PRK14623 hypothetical protein; 23.1 74 0.0016 23.0 2.2 38 147-187 63-105 (106)
107 PRK13329 pantothenate kinase; 22.7 1.1E+02 0.0023 25.8 3.5 18 25-43 118-135 (249)
108 PLN02666 5-oxoprolinase 22.5 96 0.0021 32.7 3.7 21 26-47 314-334 (1275)
109 PF03727 Hexokinase_2: Hexokin 21.7 52 0.0011 27.5 1.4 47 173-228 191-240 (243)
110 PRK13326 pantothenate kinase; 21.6 1.3E+02 0.0027 25.6 3.7 17 24-40 124-140 (262)
111 PRK13318 pantothenate kinase; 21.5 1.4E+02 0.0031 24.9 4.1 20 26-46 124-144 (258)
112 TIGR03286 methan_mark_15 putat 20.4 1.6E+02 0.0035 26.8 4.2 49 27-75 145-193 (404)
113 TIGR03590 PseG pseudaminic aci 20.3 1.3E+02 0.0029 25.5 3.7 38 168-206 170-208 (279)
114 PRK00976 hypothetical protein; 20.1 1.2E+02 0.0026 26.7 3.3 43 170-227 266-310 (326)
115 PRK14878 UGMP family protein; 20.1 78 0.0017 27.7 2.2 35 168-207 242-277 (323)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.7e-65 Score=452.41 Aligned_cols=248 Identities=36% Similarity=0.584 Sum_probs=230.9
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+|++|++++.++++|++|++|++||+|||+|++.|+|+||+||++++++++++++||+++++++.++|..+++++
T Consensus 123 lFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~ 202 (375)
T PTZ00452 123 MFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTE 202 (375)
T ss_pred HhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCC-CCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKS-CEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~-~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.++++++||++|||+.+ ++++.....+ .....|+||||+.+.++.||+.+||+||+|++++.+..+|+++|.++|
T Consensus 203 ~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si 282 (375)
T PTZ00452 203 PHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSI 282 (375)
T ss_pred HHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHH
Confidence 23577899999999999998 5555433221 223789999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCcee
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 235 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~ 235 (254)
.+||+|+|+.|++||||+||+|++|||.+||++|| ++.|...+++|..+++ |++++|+||||+|++++|+++|
T Consensus 283 ~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~ 356 (375)
T PTZ00452 283 KKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQW 356 (375)
T ss_pred HhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCC------cceeEEECchhhcCccchhhhE
Confidence 99999999999999999999999999999999999 8888888999999988 9999999999999999999999
Q ss_pred eeHHHHhhcCccchhcccC
Q 025352 236 ITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 236 it~~ey~e~G~~~~~~k~~ 254 (254)
|||+||+|+|+++++||||
T Consensus 357 vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 357 IKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred eEHHHHhccCcceeeeecC
Confidence 9999999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.2e-64 Score=447.96 Aligned_cols=248 Identities=35% Similarity=0.563 Sum_probs=230.7
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+|++|++++.++++||+|++|++||+|||+|++.|+|+||+||+++.++++++++||+++++++.++|.+++..+
T Consensus 129 lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~ 208 (380)
T PTZ00466 129 FFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNT 208 (380)
T ss_pred HhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHh
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIS 157 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~ 157 (254)
..+.++++++||++|||+.| .+++...........|+||||+.+.++.||+.+||+||+|+.+|.+..+|+++|.++|.
T Consensus 209 ~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~ 288 (380)
T PTZ00466 209 SAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSIT 288 (380)
T ss_pred HHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHH
Confidence 34578999999999999998 55554332222237899999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCceee
Q 025352 158 TVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHI 236 (254)
Q Consensus 158 ~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~i 236 (254)
+||+|.|+.|++||||+||+|++|||.+||++|| ++.|...+++|..+++ |++++|+||||+|++++|+++||
T Consensus 289 ~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~i 362 (380)
T PTZ00466 289 RADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPE------RKFSTFIGGSILASLATFKKIWI 362 (380)
T ss_pred hCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCC------CceeEEECchhhcCccchhhhEe
Confidence 9999999999999999999999999999999999 8999888999999888 99999999999999999999999
Q ss_pred eHHHHhhcCccchhcccC
Q 025352 237 TKADYDESGPSVVHRKCF 254 (254)
Q Consensus 237 t~~ey~e~G~~~~~~k~~ 254 (254)
||+||+|+|+++++||||
T Consensus 363 tk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 363 SKQEFDEYGSVILHRKTF 380 (380)
T ss_pred EHHHHhhhCcHhheeecC
Confidence 999999999999999997
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=7.7e-64 Score=444.79 Aligned_cols=248 Identities=43% Similarity=0.677 Sum_probs=231.1
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+|++|+++++++++|++|+.|++||+|||+|++.|+|+||+||+++.++++++++||+++++++.++|..++.++
T Consensus 124 lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~ 203 (376)
T PTZ00281 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTT 203 (376)
T ss_pred HhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCCCC-ceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCE-IEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~-~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.++++++||++|||+.+ +.+++....+.. ...|++|||+.+.++.||+.+||.||+|+..+.+..+|+++|.++|
T Consensus 204 ~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI 283 (376)
T PTZ00281 204 TAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSI 283 (376)
T ss_pred HHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHH
Confidence 34678899999999999988 555554322222 3789999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCcee
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 235 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~ 235 (254)
.+||+|+|+.|++||||+||+|++|||.+||++|| ++.|...+++|+.+++ |++++|+|||++|++++|+++|
T Consensus 284 ~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~------r~~~aW~Ggsilasl~~f~~~~ 357 (376)
T PTZ00281 284 MKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMW 357 (376)
T ss_pred HhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCC------CceeEEECcccccCcccHhhce
Confidence 99999999999999999999999999999999999 8988888999999888 9999999999999999999999
Q ss_pred eeHHHHhhcCccchhcccC
Q 025352 236 ITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 236 it~~ey~e~G~~~~~~k~~ 254 (254)
|||+||+|+|+++++||||
T Consensus 358 vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 358 ISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred eeHHHHhhhCchheeeecC
Confidence 9999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.7e-64 Score=435.84 Aligned_cols=246 Identities=44% Similarity=0.698 Sum_probs=230.5
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||.|++|++++..++++ |++|++||+|||+|++.|+++||+||+++++++.++++||+++++++...|.++++++
T Consensus 122 ~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~ 199 (372)
T KOG0676|consen 122 MFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTT 199 (372)
T ss_pred hhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhccccccc
Confidence 799999999999887766 9999999999999999999999999999999999999999999999999998877665
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCCC-CceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSC-EIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~-~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.++++++||++||++.| ++++.+..... ....|++|||+.+.++++|+.+||++|+|+..|.+..+|++++.++|
T Consensus 200 ~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI 279 (372)
T KOG0676|consen 200 SAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSI 279 (372)
T ss_pred ccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHH
Confidence 56789999999999999998 77776532222 22669999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCcee
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 235 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~ 235 (254)
.+|++|+|++|++||||+||++++|||.+||++|| .+.|+.++++|+++|+ |.+++|+||||+||+++|+++|
T Consensus 280 ~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~------r~~s~WlGgSIlaslstfq~~w 353 (372)
T KOG0676|consen 280 MKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPE------RKYSAWLGGSILASLSTFQQMW 353 (372)
T ss_pred HhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcc------cccceecCceeEeecchHhhcc
Confidence 99999999999999999999999999999999999 8999999999999999 8999999999999999999999
Q ss_pred eeHHHHhhcCccchhcccC
Q 025352 236 ITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 236 it~~ey~e~G~~~~~~k~~ 254 (254)
|||+||+|.|+++++||||
T Consensus 354 itk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 354 ITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred ccHHHHhhhCCceeeeccC
Confidence 9999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1e-62 Score=438.10 Aligned_cols=248 Identities=41% Similarity=0.656 Sum_probs=230.5
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||.|++|+++++++++||+|++|++||+|||+|++.|+|+||+||+++.++++++++||+++++++.++|..++..+
T Consensus 124 lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~ 203 (378)
T PTZ00004 124 MFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTT 203 (378)
T ss_pred HHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998877644
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCCCC--ceeEECCCCcEEEecchhhcccccccCcccCCCC-CCCHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCE--IEQHTLPDGQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVH 154 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~--~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~ 154 (254)
..+.++++++||++|||+.| ++++.....+.. ...|++|||+.+.++.+|+.+||+||+|+.++.+ ..+|+++|.+
T Consensus 204 ~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~ 283 (378)
T PTZ00004 204 TAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQ 283 (378)
T ss_pred HHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHH
Confidence 33577899999999999998 656554322222 3789999999999999999999999999998888 8999999999
Q ss_pred HHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCc
Q 025352 155 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQN 233 (254)
Q Consensus 155 ~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~ 233 (254)
+|.+||+|+|+.|++||||+||+|++|||.+||++|| ++.|...+++|...++ |++++|+|||++|++++|++
T Consensus 284 sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~------~~~~aW~Ggsilas~~~f~~ 357 (378)
T PTZ00004 284 SINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPE------RKYSVWIGGSILSSLPTFQQ 357 (378)
T ss_pred HHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCC------CceeEEECcccccCccchhh
Confidence 9999999999999999999999999999999999999 8889888999999888 99999999999999999999
Q ss_pred eeeeHHHHhhcCccchhcccC
Q 025352 234 QHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 234 ~~it~~ey~e~G~~~~~~k~~ 254 (254)
+||||+||+|+|+++++||||
T Consensus 358 ~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 358 MWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hEeEHHHHhhhCcceEEeecC
Confidence 999999999999999999997
No 6
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.9e-59 Score=418.65 Aligned_cols=248 Identities=37% Similarity=0.665 Sum_probs=217.0
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+|++|+++++++++||+|++|.+||+|||+|++.|+|+||+||+++.++++++++||+++++++.++|..++...
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~ 196 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINP 196 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--G
T ss_pred hhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999863221
Q ss_pred -----------------cccHHHHHHHHHhccccccchHH-HHhhcCCCCceeEECCCCcEEEecchhhcccccccCccc
Q 025352 79 -----------------NLSLYDVEKLKEQFSCCAEDELA-YEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSI 140 (254)
Q Consensus 79 -----------------~~~~~~~e~iK~~~~~v~~~~~~-~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~ 140 (254)
..+..+++++|+++|+++.+..+ ............|.+|||+.+.++.+|+.+||+||+|+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~ 276 (393)
T PF00022_consen 197 SYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSL 276 (393)
T ss_dssp CCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGG
T ss_pred ccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccccccccccccccccccccccccc
Confidence 23467899999999999998432 111112233488999999999999999999999999999
Q ss_pred CCCCCC-------CHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCC-CCCCc
Q 025352 141 LGLEAH-------GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPP-EYMPE 211 (254)
Q Consensus 141 ~~~~~~-------~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~-~~~~~ 211 (254)
.+.+.. +|+++|.++|.+||+|.|+.|++||||+||+|++|||.+||++|| .+.|...+++|+.++ +
T Consensus 277 ~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~---- 352 (393)
T PF00022_consen 277 IGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSD---- 352 (393)
T ss_dssp GTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-T----
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchh----
Confidence 887766 999999999999999999999999999999999999999999999 888888899999998 7
Q ss_pred CCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcccC
Q 025352 212 NLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 212 ~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~~ 254 (254)
|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 353 --~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 353 --RQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp --TTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred --hhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999999999999999999999999999997
No 7
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=8.7e-58 Score=406.53 Aligned_cols=248 Identities=39% Similarity=0.691 Sum_probs=228.8
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC--Cc
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP--SV 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~--~~ 78 (254)
|||.+++|++++++++++|+|++|.++|+|||+|++.|+|+||+||+++.++.+++++||+++++++.++|++++. +.
T Consensus 118 lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~ 197 (373)
T smart00268 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNS 197 (373)
T ss_pred hhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999987433 22
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcC----CCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQK----SCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~----~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
..+.+.++++|+++||++.+ ++++..... +.....|.+|||+.+.++.+|+.+||.||+|+..+.+..+|+++|.
T Consensus 198 ~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~ 277 (373)
T smart00268 198 SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVY 277 (373)
T ss_pred HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHH
Confidence 45678999999999999998 555544322 2234789999999999999999999999999999988999999999
Q ss_pred HHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCC
Q 025352 154 HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ 232 (254)
Q Consensus 154 ~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~ 232 (254)
++|++||+|+|+.+++||+|+||+|++|||.+||++|| .+.|...++++...++ +.+++|+|||++|++++|+
T Consensus 278 ~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~------~~~~~W~G~silas~~~f~ 351 (373)
T smart00268 278 ESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPE------RKYSVWLGGSILASLSTFE 351 (373)
T ss_pred HHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCC------CccceEeCcccccCccchh
Confidence 99999999999999999999999999999999999999 8888888899998888 8999999999999999999
Q ss_pred ceeeeHHHHhhcCccchhcccC
Q 025352 233 NQHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 233 ~~~it~~ey~e~G~~~~~~k~~ 254 (254)
.+||||+||+|+|+++++||||
T Consensus 352 ~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 352 DMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred hhEEEHHHHhhhCcceEEeecC
Confidence 9999999999999999999997
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=9.8e-58 Score=410.71 Aligned_cols=247 Identities=31% Similarity=0.529 Sum_probs=221.1
Q ss_pred CCcccCCCeEEeechhhhhhhcc----------CCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHH
Q 025352 1 MFETFNISGFYSSEQAVLSLYAV----------GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQE 70 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~----------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~ 70 (254)
|||+|++|++++.++++||+|++ |++||+|||+|++.|+|+||+||+++.++++++++||+++++++.++
T Consensus 125 lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~l 204 (414)
T PTZ00280 125 MFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQM 204 (414)
T ss_pred HhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHH
Confidence 69999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhccCCCc--cccHHHHHHHHHhccccccc-hHHHHhhcCCC--CceeEECCC---Cc--EEEecchhhcccccccCccc
Q 025352 71 LGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSC--EIEQHTLPD---GQ--VIRIGKERYTVGEALFQPSI 140 (254)
Q Consensus 71 l~~~~~~~--~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~--~~~~~~lpd---g~--~v~i~~~~~~~~E~lF~p~~ 140 (254)
|.+++..+ ....++++++||++||++.+ .+++......+ ....|.+|| |+ .+.++.+|+.+||+||+|+.
T Consensus 205 L~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~ 284 (414)
T PTZ00280 205 LRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEI 284 (414)
T ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhh
Confidence 98877655 23578899999999999998 66665432221 226788887 33 78999999999999999998
Q ss_pred CCCC-CCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC----------------CCccceEE
Q 025352 141 LGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC----------------SSAIRPTL 202 (254)
Q Consensus 141 ~~~~-~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~----------------~~~~~v~v 202 (254)
++.+ ..+|+++|.++|.+||+|+|++|++||||+||+|++|||.+||++|| ++. |...+++|
T Consensus 285 ~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v 364 (414)
T PTZ00280 285 FSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNV 364 (414)
T ss_pred cCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEE
Confidence 7655 45999999999999999999999999999999999999999999999 765 34567899
Q ss_pred eCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhccc
Q 025352 203 VKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC 253 (254)
Q Consensus 203 ~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~ 253 (254)
+.+++ +.+++|+||||+|++++|+++||||+||+|+|+++++|+.
T Consensus 365 ~~~~~------~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~ 409 (414)
T PTZ00280 365 VSHPR------QRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNN 409 (414)
T ss_pred ecCCc------cceeEEEChhhcccCcchhhheEEHHHHhccChHheeecc
Confidence 98887 8999999999999999999999999999999999999873
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.6e-57 Score=384.86 Aligned_cols=246 Identities=27% Similarity=0.461 Sum_probs=212.3
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCcc-
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN- 79 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~- 79 (254)
|||++++|+++++++++|++||.|+.||||||+|++.|+|+||+||+++.+++++.++||++|+..+.+.|...+.++.
T Consensus 129 mFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P 208 (426)
T KOG0679|consen 129 MFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIP 208 (426)
T ss_pred HHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999988765540
Q ss_pred ---------------c-------------------cHHHHHHHHHhccccccc--hHHHHhhcCCCCceeEECCCCcEEE
Q 025352 80 ---------------L-------------------SLYDVEKLKEQFSCCAED--ELAYEKTQKSCEIEQHTLPDGQVIR 123 (254)
Q Consensus 80 ---------------~-------------------~~~~~e~iK~~~~~v~~~--~~~~~~~~~~~~~~~~~lpdg~~v~ 123 (254)
. ...+.++.|+.++.|+.. +++.. .+..++.|++|||+..+
T Consensus 209 ~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~---~~i~~~~~efP~g~~~~ 285 (426)
T KOG0679|consen 209 MYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVA---AQIPTKHFEFPDGYTLD 285 (426)
T ss_pred HHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc---ccCCCccccCCCCcccc
Confidence 0 012344555555555432 11111 01223899999999999
Q ss_pred ecchhhcccccccCcccCC------------CCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 124 IGKERYTVGEALFQPSILG------------LEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 124 i~~~~~~~~E~lF~p~~~~------------~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
++.+||++||.||.|+... ....|+++++..||..||.|+|..|+.|||+|||+|+|+||.+||++||
T Consensus 286 ~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~EL 365 (426)
T KOG0679|consen 286 FGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKEL 365 (426)
T ss_pred cCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHH
Confidence 9999999999999998642 2356899999999999999999999999999999999999999999999
Q ss_pred -hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCc-cchhccc
Q 025352 192 -GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGP-SVVHRKC 253 (254)
Q Consensus 192 -~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~-~~~~~k~ 253 (254)
.+.|.. ++++++...- .+|+|++|+||||+|||++|+++||+|+||||.|. +.+.|||
T Consensus 366 s~~~P~s-rlki~as~~t---~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 366 SKRAPSS-RLKIIASGHT---VERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHhCCcc-eEEEEecCce---eeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 788876 9999997752 23999999999999999999999999999999999 9999998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.1e-55 Score=389.11 Aligned_cols=246 Identities=40% Similarity=0.653 Sum_probs=223.7
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCC--c
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS--V 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~--~ 78 (254)
|||.+++|+++++++++||+|++|.++|+|||+|++.|+|+||+||+++.++.+++++||+++++++.++|+.++.. .
T Consensus 118 lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~ 197 (371)
T cd00012 118 MFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNS 197 (371)
T ss_pred hhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887752 3
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhh--cCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKT--QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHT 155 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~--~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~ 155 (254)
..+...++++|+++||++.+ .+++.+. ........|.+|||+.+.++.+|+.+||+||+|+..+....+|+++|.++
T Consensus 198 ~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~ 277 (371)
T cd00012 198 SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSS 277 (371)
T ss_pred hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHH
Confidence 55678999999999999998 4443221 11222378999999999999999999999999999888899999999999
Q ss_pred HhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCC--ccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCC
Q 025352 156 ISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSS--AIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ 232 (254)
Q Consensus 156 i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~--~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~ 232 (254)
|.+||+|.|+.+++||+|+||+|++|||.+||++|| .+.|. ...+++...++ |.+++|+|||++|++++|+
T Consensus 278 i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~------~~~~aw~G~si~as~~~~~ 351 (371)
T cd00012 278 INKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPE------RKYSVWLGGSILASLSTFQ 351 (371)
T ss_pred HHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCC------ccccEEeCchhhcCchhhh
Confidence 999999999999999999999999999999999999 77776 55677777777 9999999999999999999
Q ss_pred ceeeeHHHHhhcCccchhcc
Q 025352 233 NQHITKADYDESGPSVVHRK 252 (254)
Q Consensus 233 ~~~it~~ey~e~G~~~~~~k 252 (254)
++||||+||+|+|+++++||
T Consensus 352 ~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 352 QLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred heEeeHHHHhhhCchhEecC
Confidence 99999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=6.3e-53 Score=341.31 Aligned_cols=246 Identities=34% Similarity=0.578 Sum_probs=224.8
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+++|.++++..|+++++|+.|..||+|||.|.+.|+|+||++|+.+++-.++++++|+++|+++.++|..+|+.+
T Consensus 124 MFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~ 203 (389)
T KOG0677|consen 124 MFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNH 203 (389)
T ss_pred HHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhcccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcCCCC-ceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCE-IEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~-~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.+.++++||++||++.| +.+.+.+....- ...|.||||+.+.++.|||.+||.||+|.+++.+.+++++++.++|
T Consensus 204 tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~i 283 (389)
T KOG0677|consen 204 TADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTI 283 (389)
T ss_pred ccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHH
Confidence 67899999999999999999 554433322222 2899999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC-----C------CccceEEeCCCCCCCcCCCcceeeehhhh
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC-----S------SAIRPTLVKPPEYMPENLTLYSAWIGGAI 224 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~-----~------~~~~v~v~~~~~~~~~~~~~~~~w~G~si 224 (254)
+..++|.|..++++|||+||.++.||+..||++|| ++- . ..+++++-.+|. |.+.+|+||++
T Consensus 284 QaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPr------RKhMVflGGAV 357 (389)
T KOG0677|consen 284 QAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPR------RKHMVFLGGAV 357 (389)
T ss_pred HHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCc------cceeEEEchHH
Confidence 99999999999999999999999999999999999 431 1 245788889999 99999999999
Q ss_pred hhcc-CCCCceeeeHHHHhhcCccchhcc
Q 025352 225 LAKV-VFPQNQHITKADYDESGPSVVHRK 252 (254)
Q Consensus 225 ~a~l-~~~~~~~it~~ey~e~G~~~~~~k 252 (254)
+|.+ ..-+++|+||+||.|.|..++.++
T Consensus 358 LA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 358 LAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 9985 667899999999999999998764
No 12
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=3.9e-51 Score=338.94 Aligned_cols=248 Identities=29% Similarity=0.486 Sum_probs=228.0
Q ss_pred CCcccCCCeEEeechhhhhhhcc---C-C-------ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHH
Q 025352 1 MFETFNISGFYSSEQAVLSLYAV---G-R-------ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQ 69 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~---g-~-------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~ 69 (254)
|||+|+|.+++-...+.++++-. + . ..++|||.|++.|+|+|+++|.+...+++++++||+.+|++|++
T Consensus 116 lFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE 195 (400)
T KOG0680|consen 116 LFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKE 195 (400)
T ss_pred HHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHH
Confidence 69999999999999999998762 2 1 27899999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccHHHHHHHHHhccccccc-hHHHHhhcCC---CCc-eeEECCCC-------------------cEEEec
Q 025352 70 ELGKTNPSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKS---CEI-EQHTLPDG-------------------QVIRIG 125 (254)
Q Consensus 70 ~l~~~~~~~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~---~~~-~~~~lpdg-------------------~~v~i~ 125 (254)
.+..++.+++.+..++.++||.+|||+++ .++|..+... ... ..|.|||- +.+.+.
T Consensus 196 ~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~ 275 (400)
T KOG0680|consen 196 TISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLT 275 (400)
T ss_pred HhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeec
Confidence 99999999888889999999999999999 6666644222 122 78888872 467889
Q ss_pred chhhcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeC
Q 025352 126 KERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVK 204 (254)
Q Consensus 126 ~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~ 204 (254)
+|||.+||+||+|+..++.+.||+++|.+||..||.++|+.|+.|||++||+++.|||.+||..|| +++|.+..++|..
T Consensus 276 nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~ 355 (400)
T KOG0680|consen 276 NERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSV 355 (400)
T ss_pred ccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcccC
Q 025352 205 PPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 205 ~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~~ 254 (254)
+.+ |..-+|-||+-++..++|..+||||+||+|+|++++.+|+|
T Consensus 356 p~d------p~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 356 PED------PITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred CCC------cceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 988 99999999999999999999999999999999999999986
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.1e-50 Score=360.80 Aligned_cols=248 Identities=36% Similarity=0.630 Sum_probs=224.6
Q ss_pred CCcccCCCeEEeechhhhhhhccCCc--eEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhc-----
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRI--SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK----- 73 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~--tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~----- 73 (254)
+||++++|++++.++++|++|+.|.. +|+|||+|++.|+|+||+||.++.++++++++||++++.++.++|..
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~ 208 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPS 208 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhccccc
Confidence 59999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred cCCCcc-----ccHHHHHHHHHhcc-------ccccc-hHHHHhhc-----------------CCCCceeEECCCCcEEE
Q 025352 74 TNPSVN-----LSLYDVEKLKEQFS-------CCAED-ELAYEKTQ-----------------KSCEIEQHTLPDGQVIR 123 (254)
Q Consensus 74 ~~~~~~-----~~~~~~e~iK~~~~-------~v~~~-~~~~~~~~-----------------~~~~~~~~~lpdg~~v~ 123 (254)
+++.+. .+.++++.+|+++| |++.+ .++.+... .......+.+||++.+.
T Consensus 209 ~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 288 (444)
T COG5277 209 RGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIE 288 (444)
T ss_pred CCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEe
Confidence 444443 34889999999999 88877 33222110 01123788999999999
Q ss_pred ecch-hhcccccccCcc--cCCCCCCC---------------------------HHHHHHHHHhccCHHHHHHhHcCeEe
Q 025352 124 IGKE-RYTVGEALFQPS--ILGLEAHG---------------------------IVEQLVHTISTVSSENHRQLLENTVL 173 (254)
Q Consensus 124 i~~~-~~~~~E~lF~p~--~~~~~~~~---------------------------l~~~i~~~i~~~~~d~~~~l~~nIvl 173 (254)
++.+ ||.+||.+|+|. ..+.+..+ |++++.++|..|+.+.|+.|++||||
T Consensus 289 ~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivi 368 (444)
T COG5277 289 FGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVL 368 (444)
T ss_pred echhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEE
Confidence 9999 999999999999 77666666 99999999999999999999999999
Q ss_pred ccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcc
Q 025352 174 CGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRK 252 (254)
Q Consensus 174 ~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k 252 (254)
+||+|++|||.+||++|| .+.|....++|..+++ |.+.+|+||||+|++.+|+.+||||+||+|+|++++++|
T Consensus 369 tGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~------~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~ 442 (444)
T COG5277 369 TGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPD------PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEK 442 (444)
T ss_pred ecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCc------hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhc
Confidence 999999999999999999 8999888999999998 999999999999999999999999999999999999999
Q ss_pred cC
Q 025352 253 CF 254 (254)
Q Consensus 253 ~~ 254 (254)
||
T Consensus 443 ~~ 444 (444)
T COG5277 443 RF 444 (444)
T ss_pred cC
Confidence 86
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3.7e-39 Score=268.16 Aligned_cols=245 Identities=29% Similarity=0.434 Sum_probs=208.0
Q ss_pred CCcccCCCeEEeechhhhhhhccC--------CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHh
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVG--------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
|||.|++|.+++..++++|+.++- ..||+|||.|.+.|+|.||.+||++-++++.+|++|+++|-.+.++|+
T Consensus 129 mfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 129 MFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred hhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhh
Confidence 799999999999999999987663 369999999999999999999999999999999999999999999998
Q ss_pred ccCCCc--cccHHHHHHHHHhccccccc-hHHHHhhcCCCCc--eeE---ECCCC--cEEEecchhhcccccccCcccCC
Q 025352 73 KTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEI--EQH---TLPDG--QVIRIGKERYTVGEALFQPSILG 142 (254)
Q Consensus 73 ~~~~~~--~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~~--~~~---~lpdg--~~v~i~~~~~~~~E~lF~p~~~~ 142 (254)
+++... ..+.+.++.+|+++||+.+| -+++.+...++.. +.| ..-.| ..++++-+||..||++|+|....
T Consensus 209 er~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~ 288 (415)
T KOG0678|consen 209 EREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFAN 288 (415)
T ss_pred CCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccC
Confidence 876644 45678899999999999999 7777766544321 112 22223 34677899999999999999865
Q ss_pred C-CCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC--------------CCccceEEeCCC
Q 025352 143 L-EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPP 206 (254)
Q Consensus 143 ~-~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~--------------~~~~~v~v~~~~ 206 (254)
. -...+++++...|++||+|.|+.|++||+++||.++.++|..|+++++ .+. +....++++...
T Consensus 289 ~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~ 368 (415)
T KOG0678|consen 289 PDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHL 368 (415)
T ss_pred CccCcchHHHhhhhhhhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhh
Confidence 4 356899999999999999999999999999999999999999999998 332 122346666666
Q ss_pred CCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhc
Q 025352 207 EYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHR 251 (254)
Q Consensus 207 ~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~ 251 (254)
. +.+++|.|||.+++-+.|-..+=||+||+|+|++|++.
T Consensus 369 ~------qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~ 407 (415)
T KOG0678|consen 369 L------QRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRT 407 (415)
T ss_pred h------hhcceeccCccccCCcccccccCcchhhhhhChhhhhc
Confidence 6 78999999999999999999999999999999999875
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.1e-36 Score=267.63 Aligned_cols=247 Identities=23% Similarity=0.438 Sum_probs=208.0
Q ss_pred CCcccCCCeEEeechhhhhhhcc-C---CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 1 MFETFNISGFYSSEQAVLSLYAV-G---RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~-g---~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
|||.+|+|+|.+-..++.|.|.. + ..+|+||++|++.|+|.||.||..+...++++++||.++..||.++|..+.+
T Consensus 139 LFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp 218 (645)
T KOG0681|consen 139 LFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYP 218 (645)
T ss_pred HHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCc
Confidence 79999999999999999999953 2 3479999999999999999999999999999999999999999999987655
Q ss_pred Cc--cccHHHHHHHHHhccccccc-hHHHHhhc-----------------------------------------------
Q 025352 77 SV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQ----------------------------------------------- 106 (254)
Q Consensus 77 ~~--~~~~~~~e~iK~~~~~v~~~-~~~~~~~~----------------------------------------------- 106 (254)
.+ .++...+|.++..+||+++| .++..++.
T Consensus 219 ~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~ 298 (645)
T KOG0681|consen 219 FHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVE 298 (645)
T ss_pred cchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHH
Confidence 43 45667778888888888775 22211100
Q ss_pred ----C----------------------CCCc-eeEE---CC-----CC--------------------------------
Q 025352 107 ----K----------------------SCEI-EQHT---LP-----DG-------------------------------- 119 (254)
Q Consensus 107 ----~----------------------~~~~-~~~~---lp-----dg-------------------------------- 119 (254)
. .... ..|. +| |+
T Consensus 299 k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~ 378 (645)
T KOG0681|consen 299 KINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKL 378 (645)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcc
Confidence 0 0000 0000 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 025352 120 -------------------------------------------------------------------------------- 119 (254)
Q Consensus 120 -------------------------------------------------------------------------------- 119 (254)
T Consensus 379 ~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~ 458 (645)
T KOG0681|consen 379 EEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWD 458 (645)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHH
Confidence
Q ss_pred ----------------------------------------------------cEEEecchhhcccccccCcccCCCCCCC
Q 025352 120 ----------------------------------------------------QVIRIGKERYTVGEALFQPSILGLEAHG 147 (254)
Q Consensus 120 ----------------------------------------------------~~v~i~~~~~~~~E~lF~p~~~~~~~~~ 147 (254)
..+.++.||+++||++|+|+++|.++.|
T Consensus 459 vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaG 538 (645)
T KOG0681|consen 459 VYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAG 538 (645)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhh
Confidence 0344677999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 148 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 148 l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
|.+++...+++.|.|.+..+.+||+||||+|++||+.+||..|| .+.|...+|+|+.+.+ |...+|.||+.+|
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasd------P~LDAW~GA~~~a 612 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASD------PVLDAWRGASAWA 612 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCC------cchhhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999 9999999999999999 9999999999999
Q ss_pred ccCCCCceeeeHHHHhhcCccchhccc
Q 025352 227 KVVFPQNQHITKADYDESGPSVVHRKC 253 (254)
Q Consensus 227 ~l~~~~~~~it~~ey~e~G~~~~~~k~ 253 (254)
.-++|...|+||+||+|.|+..++.++
T Consensus 613 ~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 613 ANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred cCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 999999999999999999999887765
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.97 E-value=5.8e-32 Score=236.35 Aligned_cols=250 Identities=21% Similarity=0.343 Sum_probs=186.4
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
||-+++|.++.++.+++|++|++|.+++||||||+++|+|+||.||..++++...+++||++|++.+..+|.+.++..
T Consensus 250 lL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d 329 (618)
T KOG0797|consen 250 LLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQD 329 (618)
T ss_pred HHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred -----cccHHHHHHHHHhccccccchHHHH--hh--cCCC-----------------------------------CceeE
Q 025352 79 -----NLSLYDVEKLKEQFSCCAEDELAYE--KT--QKSC-----------------------------------EIEQH 114 (254)
Q Consensus 79 -----~~~~~~~e~iK~~~~~v~~~~~~~~--~~--~~~~-----------------------------------~~~~~ 114 (254)
.++...++.+|+++|......-..+ .+ +.+. ....+
T Consensus 330 ~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~ 409 (618)
T KOG0797|consen 330 CDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSF 409 (618)
T ss_pred ccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhcccccccccccc
Confidence 4566789999999998765411110 00 0000 00112
Q ss_pred ECCCCc-----------------------------EEEe-cchhhcccccccCccc---------------CC-------
Q 025352 115 TLPDGQ-----------------------------VIRI-GKERYTVGEALFQPSI---------------LG------- 142 (254)
Q Consensus 115 ~lpdg~-----------------------------~v~i-~~~~~~~~E~lF~p~~---------------~~------- 142 (254)
.+||.+ .+.+ +.-|-+.||..-.+.+ .|
T Consensus 410 ~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i 489 (618)
T KOG0797|consen 410 PQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASI 489 (618)
T ss_pred CCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhh
Confidence 333311 0000 0011112222211110 00
Q ss_pred -------C----CCCCHHHHHHHHHhcc-CHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCc----cceEEeCC
Q 025352 143 -------L----EAHGIVEQLVHTISTV-SSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSA----IRPTLVKP 205 (254)
Q Consensus 143 -------~----~~~~l~~~i~~~i~~~-~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~----~~v~v~~~ 205 (254)
. -...+.+.|..+|..+ ..|.++.|.+.|.++||+.+.||+.+.|++.+ ...|.. ..|.|+.+
T Consensus 490 ~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~ 569 (618)
T KOG0797|consen 490 MNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPP 569 (618)
T ss_pred hcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCC
Confidence 0 0124455677777765 56899999999999999999999999999999 444431 26889998
Q ss_pred CCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhccc
Q 025352 206 PEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC 253 (254)
Q Consensus 206 ~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~ 253 (254)
|..|+ +++.+|.||+|||.+..-.+.||++.||.-+|.++++.||
T Consensus 570 prdMd---p~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~ 614 (618)
T KOG0797|consen 570 PRDMD---PQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKK 614 (618)
T ss_pred CcCCC---chheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcc
Confidence 86566 9999999999999999999999999999999999999987
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.91 E-value=6.7e-25 Score=192.67 Aligned_cols=198 Identities=20% Similarity=0.279 Sum_probs=153.8
Q ss_pred CCcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccC
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTN 75 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~ 75 (254)
+||.+|++.++++++|+||++++|. ++++|||+|+++|+++++.+|.++.. ...++||+++++.+.+.+..+
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~- 198 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRK- 198 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHH-
Confidence 3789999999999999999999987 57899999999999999999998864 457999999999999998753
Q ss_pred CCccccHHHHHHHHHhccccccc-hHH-HHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHH
Q 025352 76 PSVNLSLYDVEKLKEQFSCCAED-ELA-YEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 76 ~~~~~~~~~~e~iK~~~~~v~~~-~~~-~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
+....+.+.+|++|+++|++..+ +.+ +..... ...+.+|+ .+.++.+++ .|++|.|. ..+.+.|.
T Consensus 199 ~~~~~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~ 265 (335)
T PRK13930 199 YNLLIGERTAEEIKIEIGSAYPLDEEESMEVRGR---DLVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVK 265 (335)
T ss_pred hCCCCCHHHHHHHHHHhhcCcCCCCCceEEEECc---cCCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHH
Confidence 22234668899999999998765 211 110000 01122332 455666655 38888763 57999999
Q ss_pred HHHhccCHHHHHHhHcC-eEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 154 HTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 154 ~~i~~~~~d~~~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
+++++++++.+++++.| |+|+||+|++|||.+||++++. +++....+ |..++-.|+++++.
T Consensus 266 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~-------~~v~~~~~------p~~ava~Ga~~~~~ 327 (335)
T PRK13930 266 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG-------LPVHIAED------PLTCVARGTGKALE 327 (335)
T ss_pred HHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC-------CCceecCC------HHHHHHHHHHHHHh
Confidence 99999999999999997 9999999999999999999983 12223334 67888899999874
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.91 E-value=1.5e-24 Score=190.36 Aligned_cols=199 Identities=20% Similarity=0.275 Sum_probs=153.5
Q ss_pred CCcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEe-ecceeeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+||.+|++.+.++++|+||+|++|. .+++|||+|+++|++++| ++|...... .++||+++++.+.+++..+
T Consensus 120 ~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 120 SALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH
Confidence 3788999999999999999999987 688999999999999999 777776643 4899999999999988643
Q ss_pred CCCccccHHHHHHHHHhccccccc-hHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHH
Q 025352 75 NPSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 75 ~~~~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
+....+.+.+|++|+++|++..+ .++....... ....+.+|++. .++.+ .++|++|.|- .++.+.|.
T Consensus 197 -~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~ 264 (333)
T TIGR00904 197 -YNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVRG-RDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVK 264 (333)
T ss_pred -hcccCCHHHHHHHHHHHhccccccccccceeecC-ccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHH
Confidence 22345678899999999998764 2111100000 00234566654 34333 6778988874 57999999
Q ss_pred HHHhccCHHHHHHhHc-CeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 154 HTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 154 ~~i~~~~~d~~~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
+++++++.+.+.++.+ +|+|+||+|++||+.+||++++. +.+....+ |..++-.||++++.
T Consensus 265 ~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~-------~~v~~~~~------P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 265 RTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG-------LPVIVADD------PLLCVAKGTGKALE 326 (333)
T ss_pred HHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC-------CCceecCC------hHHHHHHHHHHHHh
Confidence 9999999999999986 79999999999999999999982 23344445 78889999999864
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.89 E-value=1.3e-23 Score=184.47 Aligned_cols=197 Identities=19% Similarity=0.285 Sum_probs=149.9
Q ss_pred CCcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEe-ecceeeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+||.+|++.+.++++|+||++++|. .+++|||+|+++|+++++ .+|....+. .++||+++++.+.+++..+
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~ 194 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRN 194 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHH
Confidence 3688999999999999999999986 467999999999999999 777776654 4799999999999998642
Q ss_pred CCCccccHHHHHHHHHhccccccchH--HHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHH
Q 025352 75 NPSVNLSLYDVEKLKEQFSCCAEDEL--AYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQL 152 (254)
Q Consensus 75 ~~~~~~~~~~~e~iK~~~~~v~~~~~--~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i 152 (254)
+....+.+.+|++|+++|++..+.+ ++.....+ ..+.+|+ .+.++.+++. |++|.|. .++.+.|
T Consensus 195 -~~~~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i 260 (334)
T PRK13927 195 -YNLLIGERTAERIKIEIGSAYPGDEVLEMEVRGRD---LVTGLPK--TITISSNEIR--EALQEPL------SAIVEAV 260 (334)
T ss_pred -hCcCcCHHHHHHHHHHhhccCCCCCCceEEEeCcc---cCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHH
Confidence 2223567889999999999865421 11100000 1122332 4566666664 7887764 5899999
Q ss_pred HHHHhccCHHHHHHhHcC-eEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 153 VHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 153 ~~~i~~~~~d~~~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.+++++++.+.+++++.+ |+|+||+|++||+.+||++++. .++. ...+ |..++-.||++++.
T Consensus 261 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~-----~~v~--~~~~------P~~ava~Ga~~~~~ 323 (334)
T PRK13927 261 KVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG-----LPVH--VAED------PLTCVARGTGKALE 323 (334)
T ss_pred HHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC-----CCcE--ecCC------HHHHHHHHHHHHHh
Confidence 999999999988888875 9999999999999999999982 1233 3334 67889999998874
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.89 E-value=3.6e-23 Score=181.58 Aligned_cols=193 Identities=18% Similarity=0.271 Sum_probs=146.9
Q ss_pred CcccCCCeEEeechhhhhhhccC-----CceEEEEEcCCCceeEEEe-ecceeeccccEEeecCHHHHHHHHHHHHhccC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELGKTN 75 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~ 75 (254)
||.+|++.+.++++|+||++++| ..+++|||+|+++|+++++ ++|..... ..++||+++++.+.+.+.. .
T Consensus 121 ~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~-~ 196 (335)
T PRK13929 121 VKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRK-K 196 (335)
T ss_pred HHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHH-H
Confidence 67899999999999999999997 4689999999999999999 55555433 3589999999999999874 2
Q ss_pred CCccccHHHHHHHHHhccccccc-hHHHHhhcCCCCceeEECCCCcEEEecchhhc--ccccccCcccCCCCCCCHHHHH
Q 025352 76 PSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYT--VGEALFQPSILGLEAHGIVEQL 152 (254)
Q Consensus 76 ~~~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~--~~E~lF~p~~~~~~~~~l~~~i 152 (254)
+.+..+...+|++|+++|++..+ +++...... ....+.+| ..+.++.+++. ++|.+| .+.+.|
T Consensus 197 ~~~~~~~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p--~~i~i~~~~~~~~i~~~l~----------~i~~~i 262 (335)
T PRK13929 197 YNLLIGERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLP--KTITLESKEIQGAMRESLL----------HILEAI 262 (335)
T ss_pred hCcCcCHHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCC--eEEEEcHHHHHHHHHHHHH----------HHHHHH
Confidence 33344667999999999998654 211100000 00112233 46777777665 578876 489999
Q ss_pred HHHHhccCHHHHHHhHc-CeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhh
Q 025352 153 VHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 225 (254)
Q Consensus 153 ~~~i~~~~~d~~~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~ 225 (254)
.+++++++++.+..+.. +|+||||+|++|||.+|+++++.+ ++.+ ..+ |..++-.|+..+
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~-----~v~~--~~~------P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVV-----PVHV--AAN------PLESVAIGTGRS 323 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCC-----Ccee--CCC------HHHHHHHHHHHH
Confidence 99999999999989998 699999999999999999999832 2232 334 778888887766
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.86 E-value=4.4e-22 Score=174.84 Aligned_cols=197 Identities=18% Similarity=0.280 Sum_probs=147.4
Q ss_pred CcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
|+.+|++.+.++++|+||++++|. .+++|+|+|+++|+++++.+|..+... .+++||+++++.+.+.+..+ +
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~-~ 194 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKK-Y 194 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHH-h
Confidence 678999999999999999999986 679999999999999999999877654 47999999999999998642 2
Q ss_pred CccccHHHHHHHHHhccccccc-h-HHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHH
Q 025352 77 SVNLSLYDVEKLKEQFSCCAED-E-LAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVH 154 (254)
Q Consensus 77 ~~~~~~~~~e~iK~~~~~v~~~-~-~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~ 154 (254)
...++...+|++|++++++..+ + .++.....+ ..+.+|+ .+.++.+++. |+++.+- ..+.+.|.+
T Consensus 195 ~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~---~~~~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~ 261 (336)
T PRK13928 195 KLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRD---LVTGLPK--TITVTSEEIR--EALKEPV------SAIVQAVKS 261 (336)
T ss_pred chhcCHHHHHHHHHHhcccccccCCcEEEEeccc---ccCCCce--EEEECHHHHH--HHHHHHH------HHHHHHHHH
Confidence 2334567899999998887543 1 111100000 0111222 2455555444 5555432 468899999
Q ss_pred HHhccCHHHHHHhHc-CeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 155 TISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 155 ~i~~~~~d~~~~l~~-nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
++.+++++++.+... +|+|+||+|++||+.+++++++.. + |....+ |..++-.||++++.
T Consensus 262 ~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~-----~--v~~~~~------P~~ava~Gaa~~~~ 322 (336)
T PRK13928 262 VLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKV-----P--VYIAED------PISCVALGTGKMLE 322 (336)
T ss_pred HHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCC-----C--ceecCC------HHHHHHHHHHHHHh
Confidence 999999888888888 799999999999999999999822 2 223334 78999999999864
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.85 E-value=2.4e-21 Score=167.60 Aligned_cols=195 Identities=22% Similarity=0.297 Sum_probs=142.2
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCC
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS 77 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~ 77 (254)
...|+.+++++++|+||+++.|. ...+|||+|+++|.++.+..|-++.+ +.+++||+++++.+.+++++++ +
T Consensus 117 ~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y-~ 193 (326)
T PF06723_consen 117 RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY-N 193 (326)
T ss_dssp HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-S
T ss_pred HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-C
Confidence 45789999999999999999985 36799999999999999999988775 6689999999999999998754 5
Q ss_pred ccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcE--EEec-chhhcccccccCcccCCCCCCCHHHHHHH
Q 025352 78 VNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQV--IRIG-KERYTVGEALFQPSILGLEAHGIVEQLVH 154 (254)
Q Consensus 78 ~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~--v~i~-~~~~~~~E~lF~p~~~~~~~~~l~~~i~~ 154 (254)
+.+....+|++|++++++....++... ...--.+-+|.. +.++ .+-..+.+..+ ..|.+.|.+
T Consensus 194 l~Ig~~tAE~iK~~~g~~~~~~~~~~~-----~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~---------~~I~~~i~~ 259 (326)
T PF06723_consen 194 LLIGERTAEKIKIEIGSASPPEEEESM-----EVRGRDLITGLPKSIEITSSEVREAIEPPV---------DQIVEAIKE 259 (326)
T ss_dssp EE--HHHHHHHHHHH-BSS--HHHHEE-----EEEEEETTTTCEEEEEEEHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred cccCHHHHHHHHHhcceeeccCCCceE-----EEECccccCCCcEEEEEcHHHHHHHHHHHH---------HHHHHHHHH
Confidence 678899999999999998766322210 002233445543 3343 34445544444 369999999
Q ss_pred HHhccCHHHHHHhHcC-eEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 155 TISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 155 ~i~~~~~d~~~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
++.++|+++..++..| |+||||+|+++|+.++|++++ .++|...++ |..++-.|+..+..
T Consensus 260 ~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-------~~pV~va~~------P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 260 VLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-------GVPVRVADD------PLTAVARGAGKLLE 320 (326)
T ss_dssp HHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-------SS-EEE-SS------TTTHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-------CCCEEEcCC------HHHHHHHHHHHHHh
Confidence 9999999999987765 999999999999999999998 345555556 78889999776653
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.62 E-value=9.2e-16 Score=129.45 Aligned_cols=196 Identities=20% Similarity=0.268 Sum_probs=141.8
Q ss_pred cccCCCeEEeechhhhhhhccCC----c-eEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCC
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR----I-SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS 77 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~----~-tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~ 77 (254)
++-+...++++++|.+|++++|. + ..+|||+|.++|.+..+..|=.+.. ....+||+.+++.+..++++ .++
T Consensus 125 ~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~-~~n 201 (342)
T COG1077 125 ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRK-KYN 201 (342)
T ss_pred HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHH-HhC
Confidence 35678899999999999999985 3 4799999999999999976666554 44679999999999999976 345
Q ss_pred ccccHHHHHHHHHhccccccc-hHHHHhhcCCCCceeEECCCCcEEEecch--hhcccccccCcccCCCCCCCHHHHHHH
Q 025352 78 VNLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEIEQHTLPDGQVIRIGKE--RYTVGEALFQPSILGLEAHGIVEQLVH 154 (254)
Q Consensus 78 ~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~~~~~~~lpdg~~v~i~~~--~~~~~E~lF~p~~~~~~~~~l~~~i~~ 154 (254)
+.+....+|++|.+.+++.++ ..+..+..-........+|. .+.++.+ +...-|.+ ..|.+.+..
T Consensus 202 l~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk--~i~i~s~ev~eal~~~v----------~~Iveair~ 269 (342)
T COG1077 202 LLIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPK--TITINSEEIAEALEEPL----------NGIVEAIRL 269 (342)
T ss_pred eeecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCe--eEEEcHHHHHHHHHHHH----------HHHHHHHHH
Confidence 567788899999999998875 21111110000001111222 2333222 22333333 478999999
Q ss_pred HHhccCHHHHHHhHcC-eEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 155 TISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 155 ~i~~~~~d~~~~l~~n-Ivl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.+.++|+++-.+...+ ++++||+|++.|+++.+.+|. .+.|+-.++ |-.++-+|+....
T Consensus 270 ~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-------~~pv~ia~~------pL~~Va~G~G~~l 329 (342)
T COG1077 270 VLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-------GVPVIIADD------PLTCVAKGTGKAL 329 (342)
T ss_pred HHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-------CCeEEECCC------hHHHHHhccchhh
Confidence 9999999999999999 999999999999999999986 344555555 6667777765554
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.55 E-value=2.1e-14 Score=120.25 Aligned_cols=154 Identities=25% Similarity=0.397 Sum_probs=115.0
Q ss_pred cccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSL 82 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~ 82 (254)
+..|+..+.++++|++++.+++....+|+|+|+++|+++.+.+|.++.. +..++||+++++.+.+.+. ++.
T Consensus 85 ~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~-------i~~ 155 (239)
T TIGR02529 85 ESAGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYG-------ISF 155 (239)
T ss_pred HHcCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhC-------CCH
Confidence 4568889999999999999888777899999999999999999988864 5679999999999987764 477
Q ss_pred HHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHH
Q 025352 83 YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSE 162 (254)
Q Consensus 83 ~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d 162 (254)
+.+|.+|...+. .++. +.+.+.+. ..+.+.+.+++++.++
T Consensus 156 ~~AE~~K~~~~~----~~~~--------------------------~~~i~~~~---------~~i~~~i~~~l~~~~~- 195 (239)
T TIGR02529 156 EEAEEYKRGHKD----EEEI--------------------------FPVVKPVY---------QKMASIVKRHIEGQGV- 195 (239)
T ss_pred HHHHHHHHhcCC----HHHH--------------------------HHHHHHHH---------HHHHHHHHHHHHhCCC-
Confidence 889999986432 1111 01111111 2456667777765554
Q ss_pred HHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhh
Q 025352 163 NHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 224 (254)
Q Consensus 163 ~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si 224 (254)
.+|+||||+|++||+.+++++.+.+ +|..+.+ |.+++-+|+.+
T Consensus 196 ------~~v~LtGG~a~ipgl~e~l~~~lg~-------~v~~~~~------P~~~va~Gaa~ 238 (239)
T TIGR02529 196 ------KDLYLVGGACSFSGFADVFEKQLGL-------NVIKPQH------PLYVTPLGIAM 238 (239)
T ss_pred ------CEEEEECchhcchhHHHHHHHHhCC-------CcccCCC------CCeehhheeec
Confidence 3799999999999999999998822 2223445 78888888754
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.49 E-value=1.1e-13 Score=117.81 Aligned_cols=156 Identities=24% Similarity=0.389 Sum_probs=114.5
Q ss_pred cccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSL 82 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~ 82 (254)
+..|+.-..++.++.+++.+.+...++|||+|+++|+++.+.+|.+... ...++||+++++.+.+.+. .+.
T Consensus 112 ~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~-------i~~ 182 (267)
T PRK15080 112 ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG-------ISF 182 (267)
T ss_pred HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhC-------CCH
Confidence 5567888889999999998887777899999999999999999998765 4579999999999998874 367
Q ss_pred HHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHH
Q 025352 83 YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSE 162 (254)
Q Consensus 83 ~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d 162 (254)
+.+|.+|.... ..++. ..+.+.++ ..+.+.|.+.+++.+
T Consensus 183 ~eAE~lK~~~~----~~~~~--------------------------~~ii~~~~---------~~i~~~i~~~l~~~~-- 221 (267)
T PRK15080 183 EEAEQYKRDPK----HHKEI--------------------------FPVVKPVV---------EKMASIVARHIEGQD-- 221 (267)
T ss_pred HHHHHHHhccC----CHHHH--------------------------HHHHHHHH---------HHHHHHHHHHHhcCC--
Confidence 88888887632 00110 01111111 235556666665443
Q ss_pred HHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 163 NHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 163 ~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
...|+|+||+|++||+.+.+++.+.+ .+..+++ |.+++-+|+.+|+
T Consensus 222 -----~~~IvLtGG~s~lpgl~e~l~~~lg~-------~v~~~~~------P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 -----VEDIYLVGGTCCLPGFEEVFEKQTGL-------PVHKPQH------PLFVTPLGIALSC 267 (267)
T ss_pred -----CCEEEEECCcccchhHHHHHHHHhCC-------CcccCCC------chHHHHHHHHhhC
Confidence 35899999999999999999999822 1223445 7899999988763
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.48 E-value=5.3e-14 Score=127.11 Aligned_cols=197 Identities=22% Similarity=0.279 Sum_probs=129.2
Q ss_pred CcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
++..|+.-..++.+|+|++++... ...+|||+|+++|+++.+.+|.+... ..+++||+++++.+.+.+.
T Consensus 175 ~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~dIa~~l~---- 248 (420)
T PRK09472 175 VERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTSDIAYAFG---- 248 (420)
T ss_pred HHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHHHHHHHhC----
Confidence 356778888899999999998753 45899999999999999999998864 5589999999999998773
Q ss_pred CccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECC--CCc-EEEecchhhcccccccCcccCCCCCCCHHHHHH
Q 025352 77 SVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP--DGQ-VIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 77 ~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp--dg~-~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
++.+.+|.+|.+++....+..+. ...+++| ++. ...+. +...-|++-. .-..|.+.|.
T Consensus 249 ---i~~~~AE~lK~~~g~~~~~~~~~--------~~~i~v~~~~~~~~~~i~--~~~l~~ii~~------r~~ei~~~i~ 309 (420)
T PRK09472 249 ---TPPSDAEAIKVRHGCALGSIVGK--------DESVEVPSVGGRPPRSLQ--RQTLAEVIEP------RYTELLNLVN 309 (420)
T ss_pred ---cCHHHHHHHHHhcceeccccCCC--------CceeEecCCCCCCCeEEc--HHHHHHHHHH------HHHHHHHHHH
Confidence 47789999999877653321000 0112222 111 11221 1111122210 0124556777
Q ss_pred HHHhccCHHHHH-----HhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCC--C--cCCCcceeeehhhh
Q 025352 154 HTISTVSSENHR-----QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYM--P--ENLTLYSAWIGGAI 224 (254)
Q Consensus 154 ~~i~~~~~d~~~-----~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~--~--~~~~~~~~w~G~si 224 (254)
+++..++.+++. .+.++|+||||+|+|||+.+.+++.+.+ ++++..|.... + .-.|.|++-+|...
T Consensus 310 ~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~-----~vri~~P~~~~g~~~~~~~P~~ata~Gl~~ 384 (420)
T PRK09472 310 EEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT-----QVRIGAPLNITGLTDYAQEPYYSTAVGLLH 384 (420)
T ss_pred HHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC-----CeEEeCCcccCCChhhcCCcHHHHHHHHHH
Confidence 777776665554 3456699999999999999999988722 23332221100 0 01288999999988
Q ss_pred hhcc
Q 025352 225 LAKV 228 (254)
Q Consensus 225 ~a~l 228 (254)
|+.-
T Consensus 385 ~~~~ 388 (420)
T PRK09472 385 YGKE 388 (420)
T ss_pred Hhhh
Confidence 8763
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.41 E-value=4.8e-13 Score=119.20 Aligned_cols=162 Identities=22% Similarity=0.301 Sum_probs=110.2
Q ss_pred CcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
++..|+.-..+..+|+|+++++.. ...+|||+|+++|+++.+.+|.+.. .+.+++||+++++.+.+.+.
T Consensus 167 ~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~---- 240 (371)
T TIGR01174 167 VERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR---- 240 (371)
T ss_pred HHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC----
Confidence 456788888999999999987642 3579999999999999999999776 35689999999999988763
Q ss_pred CccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECC---CCcEEEecchh-hcccccccCcccCCCCCCCHHHHH
Q 025352 77 SVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP---DGQVIRIGKER-YTVGEALFQPSILGLEAHGIVEQL 152 (254)
Q Consensus 77 ~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp---dg~~v~i~~~~-~~~~E~lF~p~~~~~~~~~l~~~i 152 (254)
.+.+.+|++|.+++....+.... ...+.++ ++....+..+. ..+.+..+ ..+.+.|
T Consensus 241 ---~~~~~AE~lK~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~is~~~l~~ii~~~~---------~ei~~~i 300 (371)
T TIGR01174 241 ---TPLEEAERIKIKYGCASIPLEGP--------DENIEIPSVGERPPRSLSRKELAEIIEARA---------EEILEIV 300 (371)
T ss_pred ---CCHHHHHHHHHHeeEecccCCCC--------CCEEEeccCCCCCCeEEcHHHHHHHHHHHH---------HHHHHHH
Confidence 47789999999988764321000 0112222 12222332221 11111111 2455666
Q ss_pred H-HHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 153 V-HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 153 ~-~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
. +.+++.+.+ ..+-+.|+||||+|++||+.+++.+.+
T Consensus 301 ~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~ 338 (371)
T TIGR01174 301 KQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVF 338 (371)
T ss_pred HHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHh
Confidence 5 666655433 333344999999999999999999998
No 28
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.41 E-value=5.9e-13 Score=118.52 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=126.8
Q ss_pred cccCCCeEEeechhhhhhhccC-----CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCC
Q 025352 3 ETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS 77 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~ 77 (254)
|+.+..-..++-+|+|++.+.= ...+++||||+++|+++.+.+|.+..... +|+||+++|+.+.+.|.
T Consensus 175 ~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~--ipvgG~~vT~DIa~~l~----- 247 (418)
T COG0849 175 ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGV--IPVGGDHVTKDIAKGLK----- 247 (418)
T ss_pred HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEee--EeeCccHHHHHHHHHhC-----
Confidence 4556677778888999887652 36899999999999999999999998644 89999999999999985
Q ss_pred ccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECC--CCcE-EEecchhhcccccccCcccCCCCCCCHHHHHHH
Q 025352 78 VNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP--DGQV-IRIGKERYTVGEALFQPSILGLEAHGIVEQLVH 154 (254)
Q Consensus 78 ~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp--dg~~-v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~ 154 (254)
.+.+.+|++|.+++....+..+.. ..++.| ++.. ..+ .+....+++= ...+.+.+++..
T Consensus 248 --t~~~~AE~iK~~~g~a~~~~~~~~--------~~i~v~~vg~~~~~~~--t~~~ls~II~------aR~~Ei~~lV~~ 309 (418)
T COG0849 248 --TPFEEAERIKIKYGSALISLADDE--------ETIEVPSVGSDIPRQV--TRSELSEIIE------ARVEEILELVKA 309 (418)
T ss_pred --CCHHHHHHHHHHcCccccCcCCCc--------ceEecccCCCcccchh--hHHHHHHHHH------hhHHHHHHHHHH
Confidence 488999999999877654411000 111221 1111 111 1111111110 011234455666
Q ss_pred HHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhh-cCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 155 TISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAG-LCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 155 ~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~-~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
.+++.-.+ ..+.++|+||||++++||+.|-.++-+. ...-..+..+....++..+ |.|++-+|.-.++.+
T Consensus 310 ~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~--p~fs~avGl~~~~~~ 380 (418)
T COG0849 310 ELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARN--PAFSTAVGLLLYGAL 380 (418)
T ss_pred HHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccC--chhhhhHHHHHHHhh
Confidence 66655433 6777889999999999999987765552 1111111122221111112 799999999998885
No 29
>CHL00094 dnaK heat shock protein 70
Probab=99.12 E-value=1.8e-10 Score=109.10 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=113.3
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceee---ccccEEeecCHHHHHHHHHHHHhcc-
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQ---HIASRRFEVGGMDLTKLLAQELGKT- 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~---~~~~~~~~~gG~~i~~~l~~~l~~~- 74 (254)
..|+..+.++++|.||++++|. .+.+|+|+|+++++++.+..+... .......++||+++++.+.+.+..+
T Consensus 160 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~ 239 (621)
T CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239 (621)
T ss_pred HcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHH
Confidence 4578889999999999998864 468999999999999888544221 1112235899999999999877432
Q ss_pred ----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC------CC-cE--EEecchhh-cccc
Q 025352 75 ----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP------DG-QV--IRIGKERY-TVGE 133 (254)
Q Consensus 75 ----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp------dg-~~--v~i~~~~~-~~~E 133 (254)
+.+...+ ...+|.+|+.++.... ..+.+| +| .. ..+..++| ...+
T Consensus 240 ~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~--------------~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~ 305 (621)
T CHL00094 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQ--------------TEINLPFITATQTGPKHIEKTLTRAKFEELCS 305 (621)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc--------------eEEEEeecccCCCCCeeEEEEEcHHHHHHHHH
Confidence 1111111 1234555655442210 111111 11 12 22333322 1122
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 213 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~ 213 (254)
.++ ..+...|.+++.+... ...-...|+|+||+|++|++.+.+.+.+.. ++....+
T Consensus 306 ~l~---------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~-------~~~~~~~------ 361 (621)
T CHL00094 306 DLI---------NRCRIPVENALKDAKL--DKSDIDEVVLVGGSTRIPAIQELVKKLLGK-------KPNQSVN------ 361 (621)
T ss_pred HHH---------HHHHHHHHHHHHHcCC--ChhhCcEEEEECCccCChHHHHHHHHHhCC-------CcCcCCC------
Confidence 222 2344555666655432 223357899999999999999999987621 1222223
Q ss_pred Ccceeeehhhhhhcc
Q 025352 214 TLYSAWIGGAILAKV 228 (254)
Q Consensus 214 ~~~~~w~G~si~a~l 228 (254)
|..++..||+++|..
T Consensus 362 pdeava~GAA~~aa~ 376 (621)
T CHL00094 362 PDEVVAIGAAVQAGV 376 (621)
T ss_pred chhHHHhhhHHHHHH
Confidence 678899999999875
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.12 E-value=4.1e-10 Score=107.21 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=116.5
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--cceee-ccccEEeecCHHHHHHHHHHHHhcc-
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAVQ-HIASRRFEVGGMDLTKLLAQELGKT- 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~~-~~~~~~~~~gG~~i~~~l~~~l~~~- 74 (254)
..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|... .......++||+++++.+.+.+..+
T Consensus 199 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f 278 (663)
T PTZ00400 199 IAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278 (663)
T ss_pred HcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999874 4789999999999998774 55432 2222335899999999999877542
Q ss_pred ----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCC--C-c--EEEecchhh-cccccccC
Q 025352 75 ----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD--G-Q--VIRIGKERY-TVGEALFQ 137 (254)
Q Consensus 75 ----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpd--g-~--~v~i~~~~~-~~~E~lF~ 137 (254)
+.+...+ ...+|.+|+.++.-... .+ ...+...| | . .+.++.+.| ...+.+|
T Consensus 279 ~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~--~i--------~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~- 347 (663)
T PTZ00400 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQT--EI--------NLPFITADQSGPKHLQIKLSRAKLEELTHDLL- 347 (663)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCce--EE--------EEEeeccCCCCceEEEEEECHHHHHHHHHHHH-
Confidence 1111111 12345555544321100 00 01111111 1 1 234444332 2233333
Q ss_pred cccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcce
Q 025352 138 PSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYS 217 (254)
Q Consensus 138 p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~ 217 (254)
..+.+.|.+++.+... ...-...|+|+||+|.+|++.+++++.+.. .+....+ |..+
T Consensus 348 --------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~f~~-------~~~~~~n------pdea 404 (663)
T PTZ00400 348 --------KKTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSETVKKIFGK-------EPSKGVN------PDEA 404 (663)
T ss_pred --------HHHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHHHHHHHhCC-------CcccCCC------Cccc
Confidence 2456667777766532 223357899999999999999999987621 1122234 6788
Q ss_pred eeehhhhhhcc
Q 025352 218 AWIGGAILAKV 228 (254)
Q Consensus 218 ~w~G~si~a~l 228 (254)
+-.||+++|..
T Consensus 405 VA~GAAi~aa~ 415 (663)
T PTZ00400 405 VAMGAAIQAGV 415 (663)
T ss_pred eeeccHHHHHh
Confidence 99999999865
No 31
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.09 E-value=3.8e-10 Score=106.99 Aligned_cols=191 Identities=17% Similarity=0.198 Sum_probs=115.9
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc-
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT- 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~- 74 (254)
..|+.-+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||+++++.+.+.+..+
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f 264 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 4678889999999999998874 4689999999999998874 5643 22222235899999998888876432
Q ss_pred ----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC--CC---cEEEecchhh-cccccccC
Q 025352 75 ----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP--DG---QVIRIGKERY-TVGEALFQ 137 (254)
Q Consensus 75 ----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp--dg---~~v~i~~~~~-~~~E~lF~ 137 (254)
+.+...+ ...+|..|+.++..... ++ ...+... || ..+.++.+.| ...+.++
T Consensus 265 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~--~i--------~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~- 333 (657)
T PTZ00186 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMET--EV--------NLPFITANADGAQHIQMHISRSKFEGITQRLI- 333 (657)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCce--EE--------EEeeeccCCCCCcceEEEecHHHHHHHHHHHH-
Confidence 1111111 12355555554432110 00 0111111 12 2344544433 2233333
Q ss_pred cccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcce
Q 025352 138 PSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYS 217 (254)
Q Consensus 138 p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~ 217 (254)
..+.+.+.+++.....+ ..-...|+|+||+|++|.+.+.+.+.+...+ ...-+ |..+
T Consensus 334 --------~r~~~~v~~~L~~a~~~--~~dId~VvLVGGssriP~V~~~l~~~fg~~~-------~~~~n------Pdea 390 (657)
T PTZ00186 334 --------ERSIAPCKQCMKDAGVE--LKEINDVVLVGGMTRMPKVVEEVKKFFQKDP-------FRGVN------PDEA 390 (657)
T ss_pred --------HHHHHHHHHHHHHcCCC--hhhCCEEEEECCcccChHHHHHHHHHhCCCc-------cccCC------CchH
Confidence 23455566666554332 2334689999999999999999998762111 11223 6788
Q ss_pred eeehhhhhhcc
Q 025352 218 AWIGGAILAKV 228 (254)
Q Consensus 218 ~w~G~si~a~l 228 (254)
+-+||+++|..
T Consensus 391 VA~GAAi~a~~ 401 (657)
T PTZ00186 391 VALGAATLGGV 401 (657)
T ss_pred HHHhHHHHHHH
Confidence 99999999864
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.08 E-value=3.8e-10 Score=105.99 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=115.8
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+..|+.-+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +........+||+++++.+.+.+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 34678889999999999999864 3579999999999998873 4422 11112234799999999999988653
Q ss_pred CC-Cc-cccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhh-cccccccCcccCCCCCCCHHHH
Q 025352 75 NP-SV-NLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERY-TVGEALFQPSILGLEAHGIVEQ 151 (254)
Q Consensus 75 ~~-~~-~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~ 151 (254)
.. .. ......+|..|+.++.-. .+.. ..+.++.+.| .+.+.+| ..+.+.
T Consensus 245 ~~~~~~~~~~~~~ekaK~~LS~~~----------------~~~~---~~~~itr~efe~l~~~l~---------~~~~~~ 296 (595)
T PRK01433 245 FDLPNSIDTLQLAKKAKETLTYKD----------------SFNN---DNISINKQTLEQLILPLV---------ERTINI 296 (595)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCc----------------cccc---ceEEEcHHHHHHHHHHHH---------HHHHHH
Confidence 21 00 001224566666543211 1111 1455554433 2233333 245566
Q ss_pred HHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 152 LVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 152 i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
+.++++... ..=...|+|+||+|++|.+.+.+.+.+. .++....+ |..++-.||+++|..
T Consensus 297 i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~-------~~~~~~~n------pdeaVA~GAAi~a~~ 356 (595)
T PRK01433 297 AQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFK-------VDILSDID------PDKAVVWGAALQAEN 356 (595)
T ss_pred HHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhC-------CCceecCC------chHHHHHHHHHHHHH
Confidence 666666554 1124789999999999999999997762 12233334 778899999999865
No 33
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.03 E-value=2e-09 Score=101.49 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=115.3
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +........+||+++++.+.+.+..+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 45678889999999999988763 5679999999999998774 3432 11112224899999999999998643
Q ss_pred -CCCccccHH-------HHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcE--EEecchhh-cccccccCcccCCC
Q 025352 75 -NPSVNLSLY-------DVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQV--IRIGKERY-TVGEALFQPSILGL 143 (254)
Q Consensus 75 -~~~~~~~~~-------~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~--v~i~~~~~-~~~E~lF~p~~~~~ 143 (254)
+.+...+.. .+|.+|+.++.-. .....+.. +|.. +.++.+.| .+.+.++
T Consensus 233 ~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~------------~~~i~i~~-~g~~~~~~itr~efe~l~~~ll------- 292 (599)
T TIGR01991 233 LGISADLNPEDQRLLLQAARAAKEALTDAE------------SVEVDFTL-DGKDFKGKLTRDEFEALIQPLV------- 292 (599)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHhCCCCc------------eEEEEEEE-CCcEEEEEEeHHHHHHHHHHHH-------
Confidence 222112222 2344444332110 00022222 3333 33443322 2223333
Q ss_pred CCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhh
Q 025352 144 EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGA 223 (254)
Q Consensus 144 ~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~s 223 (254)
..+.+.|.++++.... ...-...|+|+||+|++|++.+++.+.+.. .+....+ |..++-.||+
T Consensus 293 --~~i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~-------~~~~~~n------pdeaVA~GAa 355 (599)
T TIGR01991 293 --QKTLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-------EPLTDID------PDQVVALGAA 355 (599)
T ss_pred --HHHHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC-------CCCCCCC------CcHHHHHHHH
Confidence 2455666666665432 222357899999999999999999987621 1122334 7788999999
Q ss_pred hhhcc
Q 025352 224 ILAKV 228 (254)
Q Consensus 224 i~a~l 228 (254)
++|..
T Consensus 356 i~a~~ 360 (599)
T TIGR01991 356 IQADL 360 (599)
T ss_pred HHHHH
Confidence 99865
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.00 E-value=2.2e-09 Score=101.31 Aligned_cols=187 Identities=17% Similarity=0.232 Sum_probs=114.1
Q ss_pred ccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
..|+..+.++++|.||++++|. .+.+|+|+|+++++++.+. +|.. +........+||+++++.+.+.+..+
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~ 234 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE 234 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHH
Confidence 4678889999999999988753 4679999999999998873 2322 11112235799999999998876431
Q ss_pred -----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC----C--C---cEEEecchhh-ccc
Q 025352 75 -----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP----D--G---QVIRIGKERY-TVG 132 (254)
Q Consensus 75 -----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp----d--g---~~v~i~~~~~-~~~ 132 (254)
+.+...+ ...+|.+|+.++.... ..+.+| | | ..+.+..+.| ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~--------------~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~ 300 (595)
T TIGR02350 235 FKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS--------------TEINLPFITADASGPKHLEMTLTRAKFEELT 300 (595)
T ss_pred HHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc--------------eEEEeeecccCCCCCeeEEEEEeHHHHHHHH
Confidence 1111111 1234555555432110 111111 1 1 1234444332 222
Q ss_pred ccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcC
Q 025352 133 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 133 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~ 212 (254)
+.++ ..+.+.|.+++.+.... ..-...|+|+||+|++|++.+.+++.+. .++....+
T Consensus 301 ~~l~---------~~~~~~i~~~l~~a~~~--~~~i~~V~LvGGssriP~v~~~i~~~f~-------~~~~~~~~----- 357 (595)
T TIGR02350 301 ADLV---------ERTKEPVRQALKDAGLS--ASDIDEVILVGGSTRIPAVQELVKDFFG-------KEPNKSVN----- 357 (595)
T ss_pred HHHH---------HHHHHHHHHHHHHcCCC--HhHCcEEEEECCcccChHHHHHHHHHhC-------CcccCCcC-----
Confidence 3333 24566667777665321 2335789999999999999999998762 12233334
Q ss_pred CCcceeeehhhhhhcc
Q 025352 213 LTLYSAWIGGAILAKV 228 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l 228 (254)
|..++..||+++|..
T Consensus 358 -pdeava~GAa~~aa~ 372 (595)
T TIGR02350 358 -PDEVVAIGAAIQGGV 372 (595)
T ss_pred -cHHHHHHHHHHHHHH
Confidence 778899999999864
No 35
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.00 E-value=1.2e-09 Score=104.08 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=112.9
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecc--ee-eccccEEeecCHHHHHHHHHHHHhcc-
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEG--AV-QHIASRRFEVGGMDLTKLLAQELGKT- 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG--~~-~~~~~~~~~~gG~~i~~~l~~~l~~~- 74 (254)
..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+.-+ .. +..+....++||+++++.+.+.+..+
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f 276 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 276 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHH
Confidence 4578889999999999998764 478999999999999887433 21 11112235899999999999887542
Q ss_pred ----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC------CC-cE--EEecchhh-cccc
Q 025352 75 ----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP------DG-QV--IRIGKERY-TVGE 133 (254)
Q Consensus 75 ----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp------dg-~~--v~i~~~~~-~~~E 133 (254)
+.+...+ ...+|..|+.++.... ..+.+| +| .. +.+..+.| ...+
T Consensus 277 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~--------------~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~ 342 (673)
T PLN03184 277 KKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQ--------------TSISLPFITATADGPKHIDTTLTRAKFEELCS 342 (673)
T ss_pred HhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCc--------------ceEEEEeeeccCCCCceEEEEECHHHHHHHHH
Confidence 1111111 1234455554432210 111111 12 22 23444332 2222
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 213 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~ 213 (254)
.++ ..+.+.|.+++.....+. .=...|+|+||+|++|.+.+++.+.+... +....+
T Consensus 343 ~l~---------~r~~~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~~-------~~~~~n------ 398 (673)
T PLN03184 343 DLL---------DRCKTPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTGKD-------PNVTVN------ 398 (673)
T ss_pred HHH---------HHHHHHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhCCC-------cccccC------
Confidence 333 245566666666554322 22478999999999999999999876211 111223
Q ss_pred Ccceeeehhhhhhcc
Q 025352 214 TLYSAWIGGAILAKV 228 (254)
Q Consensus 214 ~~~~~w~G~si~a~l 228 (254)
|..++-.||+++|..
T Consensus 399 pdeaVA~GAAi~aa~ 413 (673)
T PLN03184 399 PDEVVALGAAVQAGV 413 (673)
T ss_pred cchHHHHHHHHHHHH
Confidence 678888999998864
No 36
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.00 E-value=4.8e-09 Score=92.68 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=98.3
Q ss_pred CcccCCCeEEeechhhhhhhcc----------C-Cc-eEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHH
Q 025352 2 FETFNISGFYSSEQAVLSLYAV----------G-RI-SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQ 69 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~ 69 (254)
|++.|+.-..+..+++|.+-+. . .. +.++||+|+++|+++.+.+|.+... +.+++||+++++.+.+
T Consensus 152 ~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~~G~~~i~~~i~~ 229 (348)
T TIGR01175 152 LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVPFGTRQLTSELSR 229 (348)
T ss_pred HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEeechHHHHHHHHHH
Confidence 5666776666776666653222 1 22 4899999999999999999998874 6789999999999987
Q ss_pred HHhccCCCccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHH
Q 025352 70 ELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIV 149 (254)
Q Consensus 70 ~l~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~ 149 (254)
.+. ++.+.+|++|.+.++......+ +.+..+ ..+.
T Consensus 230 ~~~-------~~~~~Ae~~k~~~~~~~~~~~~-----------------------------~~~~~~---------~~l~ 264 (348)
T TIGR01175 230 AYG-------LNPEEAGEAKQQGGLPLLYDPE-----------------------------VLRRFK---------GELV 264 (348)
T ss_pred HcC-------CCHHHHHHHHhcCCCCCchhHH-----------------------------HHHHHH---------HHHH
Confidence 763 4778899999875433211000 000001 1345
Q ss_pred HHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 150 EQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 150 ~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
.-|.+++............+.|+||||++.++||.+.|++++
T Consensus 265 ~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 265 DEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred HHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 556666654322222234678999999999999999999999
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.99 E-value=1.4e-09 Score=103.44 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=111.6
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc-
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT- 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~- 74 (254)
..|+..+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||+++++.+.+.+..+
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f 239 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF 239 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHH
Confidence 4578889999999999998864 4689999999999998874 3322 11122234799999999998876432
Q ss_pred ----CCCccccH-------HHHHHHHHhccccccchHHHHhhcCCCCceeEECC------CC-c--EEEecchhh-cccc
Q 025352 75 ----NPSVNLSL-------YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP------DG-Q--VIRIGKERY-TVGE 133 (254)
Q Consensus 75 ----~~~~~~~~-------~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp------dg-~--~v~i~~~~~-~~~E 133 (254)
+.+...+. ..+|.+|+.++... ...+.+| +| . .+.+..+.| ...+
T Consensus 240 ~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~ 305 (668)
T PRK13410 240 LEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS--------------VTDISLPFITATEDGPKHIETRLDRKQFESLCG 305 (668)
T ss_pred HhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------ceEEEEeeeecCCCCCeeEEEEECHHHHHHHHH
Confidence 11111111 13344454433211 0112221 11 1 223333322 2223
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 213 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~ 213 (254)
.++ ..+.+.|.+++.+... ...-...|+|+||+|++|.+.+.+.+.+.. .+....+
T Consensus 306 ~l~---------~r~~~~i~~~L~~ag~--~~~dId~VvLVGGssRiP~V~~~l~~~fg~-------~~~~~~n------ 361 (668)
T PRK13410 306 DLL---------DRLLRPVKRALKDAGL--SPEDIDEVVLVGGSTRMPMVQQLVRTLIPR-------EPNQNVN------ 361 (668)
T ss_pred HHH---------HHHHHHHHHHHHHcCC--ChhhCcEEEEECCccccHHHHHHHHHHcCC-------CcccCCC------
Confidence 333 2455666666655322 223356899999999999999999876521 1122223
Q ss_pred Ccceeeehhhhhhcc
Q 025352 214 TLYSAWIGGAILAKV 228 (254)
Q Consensus 214 ~~~~~w~G~si~a~l 228 (254)
|.-++-.||+++|..
T Consensus 362 pdeaVA~GAAi~aa~ 376 (668)
T PRK13410 362 PDEVVAVGAAIQAGI 376 (668)
T ss_pred CchHHHHhHHHHHHh
Confidence 667888999998875
No 38
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.99 E-value=2.6e-09 Score=101.40 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=114.5
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecc--ee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEG--AV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG--~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+..|+..+.++++|.||++++|. .+.+|+|+|+++++++.+.-+ .. +.......++||+++++.+.+.+..+
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~ 236 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE 236 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHH
Confidence 34678889999999999998763 578999999999999887433 11 11112235799999999998877532
Q ss_pred -----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEEC----CC--C-c--EEEecchhh-ccc
Q 025352 75 -----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL----PD--G-Q--VIRIGKERY-TVG 132 (254)
Q Consensus 75 -----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l----pd--g-~--~v~i~~~~~-~~~ 132 (254)
+.+...+ ...+|.+|+.++.-. ...+.+ .| | . .+.+..+.| ...
T Consensus 237 ~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~--------------~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~ 302 (627)
T PRK00290 237 FKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ--------------QTEINLPFITADASGPKHLEIKLTRAKFEELT 302 (627)
T ss_pred HHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------eEEEEEeecccCCCCCeEEEEEECHHHHHHHH
Confidence 1111111 123444555443211 011111 11 2 1 233444332 222
Q ss_pred ccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcC
Q 025352 133 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 133 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~ 212 (254)
+.++ ..+.+.|.+++...... ..-...|+|+||+|++|.+.+++++.+.. .+....+
T Consensus 303 ~~l~---------~~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~-------~~~~~~n----- 359 (627)
T PRK00290 303 EDLV---------ERTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK-------EPNKGVN----- 359 (627)
T ss_pred HHHH---------HHHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC-------CCCcCcC-----
Confidence 3333 24566677777665432 22357899999999999999999987611 1222233
Q ss_pred CCcceeeehhhhhhcc
Q 025352 213 LTLYSAWIGGAILAKV 228 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l 228 (254)
|..++..||+++|..
T Consensus 360 -pdeava~GAa~~aa~ 374 (627)
T PRK00290 360 -PDEVVAIGAAIQGGV 374 (627)
T ss_pred -ChHHHHHhHHHHHHH
Confidence 678899999999864
No 39
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.98 E-value=1.5e-09 Score=103.32 Aligned_cols=191 Identities=16% Similarity=0.213 Sum_probs=112.7
Q ss_pred ccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +........+||+++++.+.+.+..+
T Consensus 158 ~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~ 237 (653)
T PRK13411 158 IAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN 237 (653)
T ss_pred HcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 4578889999999999998864 3579999999999998763 2322 11112234799999999998877532
Q ss_pred -----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCC---Cc--EEEecchhh-ccccccc
Q 025352 75 -----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD---GQ--VIRIGKERY-TVGEALF 136 (254)
Q Consensus 75 -----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpd---g~--~v~i~~~~~-~~~E~lF 136 (254)
+.+...+ ...+|..|+.++.-... . ....+...| +. .+.+..+.| ...+.++
T Consensus 238 f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~--~--------i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~ 307 (653)
T PRK13411 238 FQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTT--S--------INLPFITADETGPKHLEMELTRAKFEELTKDLV 307 (653)
T ss_pred HHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCce--E--------EEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHH
Confidence 1111111 12344445443321100 0 001111111 11 233444332 2222232
Q ss_pred CcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCc
Q 025352 137 QPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTL 215 (254)
Q Consensus 137 ~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~ 215 (254)
..+.+.|.+++++... ...-...|+|+||+|++|.+.++|++.+ .. ++....+ |.
T Consensus 308 ---------~~~~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~n------pd 363 (653)
T PRK13411 308 ---------EATIEPMQQALKDAGL--KPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSVN------PD 363 (653)
T ss_pred ---------HHHHHHHHHHHHHcCC--CHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCCC------ch
Confidence 2455666677765533 2334578999999999999999999776 21 1222334 67
Q ss_pred ceeeehhhhhhcc
Q 025352 216 YSAWIGGAILAKV 228 (254)
Q Consensus 216 ~~~w~G~si~a~l 228 (254)
.++-.||+++|..
T Consensus 364 eaVA~GAAi~aa~ 376 (653)
T PRK13411 364 EAVALGAAIQAGV 376 (653)
T ss_pred HHHHHHHHHHHHh
Confidence 8888999999864
No 40
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.96 E-value=3.2e-09 Score=100.41 Aligned_cols=187 Identities=18% Similarity=0.163 Sum_probs=111.5
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+..|+..+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +........+||+++++.+.+.+..+
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 35688889999999999988753 4579999999999998874 3322 11122235799999999999888643
Q ss_pred C-CCccccHH-------HHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhh-cccccccCcccCCCCC
Q 025352 75 N-PSVNLSLY-------DVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERY-TVGEALFQPSILGLEA 145 (254)
Q Consensus 75 ~-~~~~~~~~-------~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~-~~~E~lF~p~~~~~~~ 145 (254)
. .....+.. .+|..|+.++.- ....+.+++-. -.++.+.| .+.+.++
T Consensus 253 ~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~~~-~~itr~efe~l~~~l~--------- 308 (616)
T PRK05183 253 AGLSPRLDPEDQRLLLDAARAAKEALSDA--------------DSVEVSVALWQ-GEITREQFNALIAPLV--------- 308 (616)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCC--------------ceEEEEEecCC-CeEcHHHHHHHHHHHH---------
Confidence 2 11111222 233444433211 00222222211 11332221 2222222
Q ss_pred CCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhh
Q 025352 146 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 225 (254)
Q Consensus 146 ~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~ 225 (254)
..+.+.+.+++.+... ...-...|+|+||+|++|.+.+++.+.+... +....+ |..++-.||+++
T Consensus 309 ~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~~-------~~~~~n------pdeaVA~GAAi~ 373 (616)
T PRK05183 309 KRTLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVGEFFGRT-------PLTSID------PDKVVAIGAAIQ 373 (616)
T ss_pred HHHHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHHHHhccC-------cCcCCC------chHHHHHHHHHH
Confidence 2355556666655432 1222478999999999999999999776211 122234 778899999999
Q ss_pred hcc
Q 025352 226 AKV 228 (254)
Q Consensus 226 a~l 228 (254)
|..
T Consensus 374 a~~ 376 (616)
T PRK05183 374 ADI 376 (616)
T ss_pred HHH
Confidence 864
No 41
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.93 E-value=3e-09 Score=93.73 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=108.0
Q ss_pred cCCCeEEeechhhhhhhccCC-------------ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHH
Q 025352 5 FNISGFYSSEQAVLSLYAVGR-------------ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 71 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g~-------------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l 71 (254)
..+..+.+++|++.|++.... ...+|||+|+.+|+++.+.++.+....+..++.|+..+.+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 457789999999999865421 2469999999999999999999988877778999999999999999
Q ss_pred hccCCCccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHH
Q 025352 72 GKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQ 151 (254)
Q Consensus 72 ~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~ 151 (254)
..+.....++.+.++++.+. ..+.+..++.+++.++...+.+.++ ..+.+-
T Consensus 231 ~~~~~~~~~~~~~ie~~l~~--------------------g~i~~~~~~~id~~~~~~~~~~~~~---------~~i~~~ 281 (344)
T PRK13917 231 SKKEEGASITPYMLEKGLEY--------------------GACKLNQKTVIDFKDEFYKEQDSVI---------DEVMSG 281 (344)
T ss_pred HhhCCCCCCCHHHHHHHHHc--------------------CcEEeCCCceEehHHHHHHHHHHHH---------HHHHHH
Confidence 54332223444555555432 1112212234444332222222211 112222
Q ss_pred HHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 152 LVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 152 i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
|...+... .-..+|+|+||+|.+ +.+.|++.+ | ++...++ |+++--.|--.++.+
T Consensus 282 i~~~~~~~------~~~d~IiL~GGGA~l--l~~~lk~~f---~-----~~~~~~~------p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 282 FEIAVGNI------NSFDRVIVTGGGANI--FFDSLSHWY---S-----DVEKADE------SQFANVRGYYKYGEL 336 (344)
T ss_pred HHHHhccc------CCCCEEEEECCcHHH--HHHHHHHHc---C-----CeEEcCC------hHHHHHHHHHHHHHH
Confidence 22222211 124679999999987 666666554 2 1233355 788888887777763
No 42
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.90 E-value=1.2e-08 Score=97.24 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=115.4
Q ss_pred cccCCCeEEeechhhhhhhccCC-------ceEEEEEcCCCceeEEEee--cceee-ccccEEeecCHHHHHHHHHHHHh
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI--EGAVQ-HIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~~~-~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
+..|+..+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|... ........+||+++++.+.+.+.
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHH
Confidence 34678889999999999998753 4689999999999998774 44321 11122357999999999988774
Q ss_pred ccC------CCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEEC---CCCc--EEEecchhh-cccc
Q 025352 73 KTN------PSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL---PDGQ--VIRIGKERY-TVGE 133 (254)
Q Consensus 73 ~~~------~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l---pdg~--~v~i~~~~~-~~~E 133 (254)
.+. .++..+ ...+|.+|+.++... ...+.+ .++. .+.+..+.| ...+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~--------------~~~i~i~~~~~~~d~~~~itR~~fe~l~~ 309 (653)
T PTZ00009 244 QDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSST--------------QATIEIDSLFEGIDYNVTISRARFEELCG 309 (653)
T ss_pred HHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCc--------------eEEEEEEeccCCceEEEEECHHHHHHHHH
Confidence 321 111111 123444454433211 022222 2332 334444433 2233
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~ 212 (254)
.+| ..+.+.|.+++.+...+ ..-...|+|+||+|++|.+.++|.+.+ .. ++....+
T Consensus 310 ~l~---------~~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i~~~f~~~-------~~~~~~n----- 366 (653)
T PTZ00009 310 DYF---------RNTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLIKDFFNGK-------EPCKSIN----- 366 (653)
T ss_pred HHH---------HHHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHHHHHhCCC-------CCCCCCC-----
Confidence 333 24556677777765433 223578999999999999999999776 21 1222223
Q ss_pred CCcceeeehhhhhhcc
Q 025352 213 LTLYSAWIGGAILAKV 228 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l 228 (254)
|..++-.||+++|..
T Consensus 367 -pdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 367 -PDEAVAYGAAVQAAI 381 (653)
T ss_pred -cchHHhhhhhhhHHH
Confidence 678888999998764
No 43
>PRK11678 putative chaperone; Provisional
Probab=98.83 E-value=2.3e-08 Score=90.97 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=49.8
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee-cc----------eeeccccEEeecCHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI-EG----------AVQHIASRRFEVGGMDLTKL 66 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~-dG----------~~~~~~~~~~~~gG~~i~~~ 66 (254)
+..|++.+.++++|.||++++|. .+.+|+|+|+++++++.|- ++ .++.++. ..+||+++++.
T Consensus 181 ~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~ 258 (450)
T PRK11678 181 KRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDIA 258 (450)
T ss_pred HHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC--CCCChHHHHHH
Confidence 45689999999999999998873 5789999999999998873 21 1222222 36999999999
Q ss_pred HH
Q 025352 67 LA 68 (254)
Q Consensus 67 l~ 68 (254)
+.
T Consensus 259 L~ 260 (450)
T PRK11678 259 LA 260 (450)
T ss_pred HH
Confidence 86
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.80 E-value=2.6e-08 Score=87.79 Aligned_cols=119 Identities=22% Similarity=0.356 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccHHHHHHHHHhccccccchHHHHhh
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKT 105 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~ 105 (254)
.+-++||+|++.|+++.+.+|.++.. +.+++||+++++.+.+.+. ++.+.++.+|.... .+.+.
T Consensus 180 ~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~-------i~~~~Ae~~k~~~~-l~~~~------ 243 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG-------IDFEEAEELKRSGG-LPEEY------ 243 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT---------HHHHHHHHHHT-------------
T ss_pred ceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC-------CCHHHHHHHHhcCC-CCcch------
Confidence 35699999999999999999999874 7789999999999998873 47778888887632 11110
Q ss_pred cCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHH
Q 025352 106 QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFED 185 (254)
Q Consensus 106 ~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~e 185 (254)
...+-+.++ ..+.+-|.+++.-........-.++|+|+||+|.++|+.+
T Consensus 244 ----------------------~~~~l~~~~---------~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~ 292 (340)
T PF11104_consen 244 ----------------------DQDALRPFL---------EELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAE 292 (340)
T ss_dssp ----------------------HHHHHHHHH---------HHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHH
T ss_pred ----------------------HHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHH
Confidence 001111111 2466777777775544445556788999999999999999
Q ss_pred HHHHhh
Q 025352 186 RFQKEA 191 (254)
Q Consensus 186 rl~~eL 191 (254)
.|.++|
T Consensus 293 ~l~~~l 298 (340)
T PF11104_consen 293 YLSEEL 298 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999999
No 45
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.78 E-value=5.8e-09 Score=98.60 Aligned_cols=190 Identities=21% Similarity=0.293 Sum_probs=113.5
Q ss_pred cccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEee--cceee-ccccEEeecCHHHHHHHHHHHHhc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAVQ-HIASRRFEVGGMDLTKLLAQELGK 73 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~~-~~~~~~~~~gG~~i~~~l~~~l~~ 73 (254)
+..|++.+.++++|.||+++++. .+-+|+|+|+++++++.+. +|..- ........+||+++++.+.+.+..
T Consensus 159 ~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 159 ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccc
Confidence 34677888999999999987653 4789999999999888773 45332 222234579999999999998854
Q ss_pred c-----CCCccccH-------HHHHHHHHhccccccchHHHHhhcCCCCceeEE----CCCCcE--EEecchhh-ccccc
Q 025352 74 T-----NPSVNLSL-------YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHT----LPDGQV--IRIGKERY-TVGEA 134 (254)
Q Consensus 74 ~-----~~~~~~~~-------~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~----lpdg~~--v~i~~~~~-~~~E~ 134 (254)
+ +.+...+. ..++.+|+.++... . ....+. ..+|.. +.+..+.| ...+.
T Consensus 239 ~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~-~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~ 306 (602)
T PF00012_consen 239 KFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSND-----------N-TEITISIESLYDDGEDFSITITREEFEELCEP 306 (602)
T ss_dssp HHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSS-----------S-SEEEEEEEEEETTTEEEEEEEEHHHHHHHTHH
T ss_pred ccccccccccccccccccccccccccccccccccc-----------c-cccccccccccccccccccccccceecccccc
Confidence 2 11111111 12334444332210 0 001111 122433 33444433 22333
Q ss_pred ccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCC
Q 025352 135 LFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLT 214 (254)
Q Consensus 135 lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~ 214 (254)
+++ .+.+.|.+++.+.... ..=...|+|+||+|++|.+.+.|.+.+. -.+....+ |
T Consensus 307 ~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~-------~~~~~~~~------p 362 (602)
T PF00012_consen 307 LLE---------RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG-------KKISKSVN------P 362 (602)
T ss_dssp HHH---------HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT-------SEEB-SS-------T
T ss_pred ccc---------cccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc-------cccccccc------c
Confidence 332 4567777777765432 2334679999999999999999987762 12333344 7
Q ss_pred cceeeehhhhhhcc
Q 025352 215 LYSAWIGGAILAKV 228 (254)
Q Consensus 215 ~~~~w~G~si~a~l 228 (254)
..++-.||+++|..
T Consensus 363 ~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 363 DEAVARGAALYAAI 376 (602)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred ccccccccccchhh
Confidence 78899999999864
No 46
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.70 E-value=1.4e-08 Score=80.66 Aligned_cols=135 Identities=24% Similarity=0.346 Sum_probs=103.3
Q ss_pred CcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCcccc
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 81 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~ 81 (254)
.|+.|....+.+++|.++++-.+.++|-|||+|.++|-|..+-+|.++..+- -+.||.+++..+...- .++
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtLvlAG~y-------gi~ 186 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTLVLAGNY-------GIS 186 (277)
T ss_pred ecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEEEEeccc-------CcC
Confidence 5788999999999999999999999999999999999999999999998765 4899988875544321 357
Q ss_pred HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCH
Q 025352 82 LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSS 161 (254)
Q Consensus 82 ~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~ 161 (254)
.+.+|+.|...- +++ |-|..--..+ ..+++++.+.|+..++
T Consensus 187 ~EeAE~~Kr~~k------------------------~~~------Eif~~v~PV~---------eKMAeIv~~hie~~~i 227 (277)
T COG4820 187 LEEAEQYKRGHK------------------------KGE------EIFPVVKPVY---------EKMAEIVARHIEGQGI 227 (277)
T ss_pred HhHHHHhhhccc------------------------cch------hcccchhHHH---------HHHHHHHHHHhccCCC
Confidence 788888887410 000 0011100111 2467888888877765
Q ss_pred HHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 162 ENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 162 d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
.-+.|+||.++.||+.+-++++|
T Consensus 228 -------~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 228 -------TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred -------cceEEecccccCccHHHHHHHHh
Confidence 46899999999999999999998
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.32 E-value=2.1e-06 Score=75.06 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=58.8
Q ss_pred cCCCeEEeechhhhhhhcc---------CCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 5 FNISGFYSSEQAVLSLYAV---------GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~---------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
..+..+.+.||++.|.+.. ...+.+|||+|+.+|+++.+.++.+....+..++.|...+.+.+.+.+.++
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 4678899999999887643 345679999999999999998888888777778999999999999998753
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.26 E-value=6.5e-06 Score=70.40 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=83.0
Q ss_pred EEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccHHHHHHHHHhccccccchHHHHhhcC
Q 025352 28 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQK 107 (254)
Q Consensus 28 glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~ 107 (254)
.+|+|||+..|+++.+.+|+++.. +..++||+.+++.+.+.+. .+.+.++++|...
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~-------L~~~~a~~~k~~~--------------- 250 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS-------LTEEKAEEIKRGG--------------- 250 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC-------CChhHhHHHHhCC---------------
Confidence 469999999999999999999985 7789999999999999874 4777888888652
Q ss_pred CCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHH
Q 025352 108 SCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRF 187 (254)
Q Consensus 108 ~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl 187 (254)
.+|+..... .+ .| -...|.+-|.++|+-.-..--..-...|+|+||++.+.|+.+.+
T Consensus 251 -------~~P~~y~~~----------vl-~~-----f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i 307 (354)
T COG4972 251 -------TLPTDYGSE----------VL-RP-----FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAI 307 (354)
T ss_pred -------CCCCchhHH----------HH-HH-----HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHH
Confidence 222211000 00 00 00246666777776431111112346899999999999999999
Q ss_pred HHhh
Q 025352 188 QKEA 191 (254)
Q Consensus 188 ~~eL 191 (254)
++.|
T Consensus 308 ~qrl 311 (354)
T COG4972 308 QQRL 311 (354)
T ss_pred HHHh
Confidence 9999
No 49
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=6.5e-06 Score=77.36 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=55.3
Q ss_pred ccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeec--ce-eeccccEEeecCHHHHHHHHHHHHhc
Q 025352 4 TFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIE--GA-VQHIASRRFEVGGMDLTKLLAQELGK 73 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~d--G~-~~~~~~~~~~~gG~~i~~~l~~~l~~ 73 (254)
..|++-+.++++|.||++++|. .+-+|+|+|+++++++-|-= |. .+........+||+++++.+...+..
T Consensus 145 iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 145 IAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 4688899999999999999974 57899999999999998843 31 12223345689999999998887754
No 50
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.83 E-value=7.8e-05 Score=65.16 Aligned_cols=83 Identities=27% Similarity=0.253 Sum_probs=55.9
Q ss_pred ccCCCeEEeechhhhhhhcc-----CCceEEEEEcCCCceeEEEeecceeecc-ccEEeecCHHHHHHHHHHHHhccCCC
Q 025352 4 TFNISGFYSSEQAVLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQHI-ASRRFEVGGMDLTKLLAQELGKTNPS 77 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~-~~~~~~~gG~~i~~~l~~~l~~~~~~ 77 (254)
.+.+..+.+.||+++|.|.. ...+.+|||+|+.+|+++.|.++....+ +....+.|-..+.+.+.+.|...+.
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~~- 215 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAGI- 215 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--SB-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhcC-
Confidence 45578899999999998864 2367899999999999999987654433 3334578999999999999876332
Q ss_pred ccccHHHHHHH
Q 025352 78 VNLSLYDVEKL 88 (254)
Q Consensus 78 ~~~~~~~~e~i 88 (254)
..+...++++
T Consensus 216 -~~s~~~~~~i 225 (318)
T PF06406_consen 216 -DTSELQIDDI 225 (318)
T ss_dssp -HHHHHHHHHH
T ss_pred -CCcHHHHHHH
Confidence 2234445544
No 51
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.7e-05 Score=65.26 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEE--eeccee-eccccEEeecCHHHHHHHHHHHH
Q 025352 6 NISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAP--VIEGAV-QHIASRRFEVGGMDLTKLLAQEL 71 (254)
Q Consensus 6 ~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~p--v~dG~~-~~~~~~~~~~gG~~i~~~l~~~l 71 (254)
|..-+.++++|.+|+.++|. .+-+|.|+|.++-+|.- |-+|+- +......-.+||.++++.+.+.+
T Consensus 199 gLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 199 GLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 45567899999999999873 68899999999977654 455532 11111123799999998887765
No 52
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.69 E-value=0.00046 Score=58.11 Aligned_cols=147 Identities=19% Similarity=0.310 Sum_probs=83.8
Q ss_pred EEEEEcCCCceeEEEeecceeeccc-cEEeecCHHHHHHHHHHHHhccCCCccccHHHHHHHHHhccccccchHHHHhhc
Q 025352 28 GCTVDIGHGKIDIAPVIEGAVQHIA-SRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQ 106 (254)
Q Consensus 28 glVVDiG~~~t~v~pv~dG~~~~~~-~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~ 106 (254)
..|||||.+-|.+.-+.+|.+..-. ...+..|+-.+.+.+.+.|. ++.+.+++++.+--...
T Consensus 93 ~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-------~~~~e~~~~~~~~~~~~---------- 155 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG-------VSVEELGSLAEKADRKA---------- 155 (248)
T ss_pred CEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC-------CCHHHHHHHHhcCCCCC----------
Confidence 4599999999999999999876211 23357788888888887773 35566666665411100
Q ss_pred CCCCceeEECCCCcEEEe--cch-hhcc-----cccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCcc
Q 025352 107 KSCEIEQHTLPDGQVIRI--GKE-RYTV-----GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTT 178 (254)
Q Consensus 107 ~~~~~~~~~lpdg~~v~i--~~~-~~~~-----~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s 178 (254)
+-+.+..+ ..+ .... +|-+..+ -...+...+.+.+...++ -..|+++||.+
T Consensus 156 ----------~~~~~c~vf~~s~vi~~l~~g~~~~di~~~-----~~~~va~~i~~~~~~~~~------~~~Vvl~GGva 214 (248)
T TIGR00241 156 ----------KISSMCTVFAESELISLLAAGVKKEDILAG-----VYESIAERVAEMLQRLKI------EAPIVFTGGVS 214 (248)
T ss_pred ----------CcCCEeEEEechhHHHHHHCCCCHHHHHHH-----HHHHHHHHHHHHHhhcCC------CCCEEEECccc
Confidence 00000000 000 0000 0000000 001233333333333321 13799999999
Q ss_pred CccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhh
Q 025352 179 SMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 225 (254)
Q Consensus 179 ~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~ 225 (254)
..+++.+++.+.| ...+..+++ +++..-+|++++
T Consensus 215 ~n~~l~~~l~~~l-------g~~v~~~~~------~~~~~AlGaAl~ 248 (248)
T TIGR00241 215 KNKGLVKALEKKL-------GMKVITPPE------PQIVGAVGAALL 248 (248)
T ss_pred cCHHHHHHHHHHh-------CCcEEcCCC------ccHHHHHHHHhC
Confidence 9999999999987 234555555 677788888763
No 53
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00022 Score=66.51 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=104.3
Q ss_pred cCCCeEEeechhhhhhhccC-------CceEEEEEcCCCceeEEEe--ecce-eeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 5 FNISGFYSSEQAVLSLYAVG-------RISGCTVDIGHGKIDIAPV--IEGA-VQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g-------~~tglVVDiG~~~t~v~pv--~dG~-~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
.|+..+.++++|.||++++| ..+-+|.|+|+++.+|.++ -+|. .+....-..++||.++++.+...+.
T Consensus 169 aGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~-- 246 (620)
T KOG0101|consen 169 AGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFA-- 246 (620)
T ss_pred cCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHH--
Confidence 56788999999999999987 3567999999999998887 3342 1222233358999999988887763
Q ss_pred CCCccccHHHHHHHHHhcc-ccccchHHHH---------hhcCC-CCceeE---ECCCCcEEE--ecchhh-cccccccC
Q 025352 75 NPSVNLSLYDVEKLKEQFS-CCAEDELAYE---------KTQKS-CEIEQH---TLPDGQVIR--IGKERY-TVGEALFQ 137 (254)
Q Consensus 75 ~~~~~~~~~~~e~iK~~~~-~v~~~~~~~~---------~~~~~-~~~~~~---~lpdg~~v~--i~~~~~-~~~E~lF~ 137 (254)
.++|++.. .+..+.+.+. +..-+ ...... .|-+|.... +...|| ....-||.
T Consensus 247 -----------~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~ 315 (620)
T KOG0101|consen 247 -----------AEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFR 315 (620)
T ss_pred -----------HHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHH
Confidence 33333332 1222111111 10000 000011 122332211 222222 12233332
Q ss_pred cccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcc
Q 025352 138 PSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLY 216 (254)
Q Consensus 138 p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~ 216 (254)
...+.+..+++..-. -+.-...|||+||.+.+|.+..-+++=. .. ++..+-+ |.-
T Consensus 316 ---------~~~~~v~~~L~da~~--dk~~i~~vvlVGGstriPk~~~ll~d~f~~k-------~~~~sin------pDe 371 (620)
T KOG0101|consen 316 ---------STLEPVEKALKDAKL--DKSDIDEVVLVGGSTRIPKVQKLLEDFFNGK-------ELNKSIN------PDE 371 (620)
T ss_pred ---------HHHHHHHHHHHhhcc--CccCCceeEEecCcccchHHHHHHHHHhccc-------ccccCCC------HHH
Confidence 233444455544332 1233567999999999999988777554 20 1111112 567
Q ss_pred eeeehhhhhhccCC
Q 025352 217 SAWIGGAILAKVVF 230 (254)
Q Consensus 217 ~~w~G~si~a~l~~ 230 (254)
.+-.||++-|.+.+
T Consensus 372 avA~GAavqaa~~~ 385 (620)
T KOG0101|consen 372 AVAYGAAVQAAILS 385 (620)
T ss_pred HHHhhHHHHhhhcc
Confidence 77788888877643
No 54
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.90 E-value=0.0073 Score=54.82 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHH
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKL 66 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~ 66 (254)
....++||||+++|+++.+.+|.++...+ +++||++++..
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~T~~--l~vGG~~IT~D 184 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVIDTAC--LNVGGRLIETD 184 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEEEEE--EecccceEEEC
Confidence 36789999999999999999999998644 89999998865
No 55
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.032 Score=51.21 Aligned_cols=169 Identities=15% Similarity=0.182 Sum_probs=94.8
Q ss_pred CCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEE--eecceeecc-ccEEeecCHHHHHHHHHHHHhccC--
Q 025352 6 NISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAP--VIEGAVQHI-ASRRFEVGGMDLTKLLAQELGKTN-- 75 (254)
Q Consensus 6 ~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~p--v~dG~~~~~-~~~~~~~gG~~i~~~l~~~l~~~~-- 75 (254)
+...+.++++|.+|++++|. .+-.|-|+|.++..+.. |.+|.-.-. .-.....||.+++..+..++-.+.
T Consensus 187 gl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~ 266 (640)
T KOG0102|consen 187 GLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKK 266 (640)
T ss_pred cceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhc
Confidence 44556778999999999874 35589999999776654 366654322 122346899999999998875422
Q ss_pred ---CCccccHHHHHHHHHhc----cccccc-hHHHHhhcCCCCceeEECCCC---cEEEecchhhcccccccCcccCCCC
Q 025352 76 ---PSVNLSLYDVEKLKEQF----SCCAED-ELAYEKTQKSCEIEQHTLPDG---QVIRIGKERYTVGEALFQPSILGLE 144 (254)
Q Consensus 76 ---~~~~~~~~~~e~iK~~~----~~v~~~-~~~~~~~~~~~~~~~~~lpdg---~~v~i~~~~~~~~E~lF~p~~~~~~ 144 (254)
.+...+...++.+++.- |-++.. ..++. .+|.-.|. +.+.+.-.|...-|
T Consensus 267 ~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~--------lp~iTada~gpkh~~i~~tr~efe~----------- 327 (640)
T KOG0102|consen 267 EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEIN--------LPFITADASGPKHLNIELTRGEFEE----------- 327 (640)
T ss_pred ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceec--------cceeeccCCCCeeEEEeecHHHHHH-----------
Confidence 22223344444444420 111110 00110 12222222 33333222222112
Q ss_pred CCCHHHHHHHHHhccCHHHHHH-----hHcCeEeccCccCccchHHHHHHhhhcCC
Q 025352 145 AHGIVEQLVHTISTVSSENHRQ-----LLENTVLCGGTTSMTGFEDRFQKEAGLCS 195 (254)
Q Consensus 145 ~~~l~~~i~~~i~~~~~d~~~~-----l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 195 (254)
-++.+|.+.|.-|-.++|.. =.+.|+|+||.+.+|-..+-+.+-+...|
T Consensus 328 --~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p 381 (640)
T KOG0102|consen 328 --LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGP 381 (640)
T ss_pred --hhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCC
Confidence 24566666666554444442 34579999999999999888874444444
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.09 E-value=0.068 Score=47.10 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=40.5
Q ss_pred eEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 171 TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 171 Ivl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
||++||.+...++.+.+++.+ ..+|+.||+ +++..-+||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~l-------g~~V~vP~~------~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-------GRKVIVPPY------AQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-------CCeeecCCc------cchhhHHHHHHHHhh
Confidence 999999999999999999887 457888888 899999999999863
No 57
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.77 E-value=0.024 Score=48.01 Aligned_cols=168 Identities=15% Similarity=0.183 Sum_probs=88.5
Q ss_pred ccCCCeEEeechhhhhhhcc----CC-ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc
Q 025352 4 TFNISGFYSSEQAVLSLYAV----GR-ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV 78 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~----g~-~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~ 78 (254)
.+|++.-.--.++-+|..+. |. ..-.|+|+|+++|+.+-|-....+. ..++-=+|+-+|-.+..-|-
T Consensus 107 ~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTmlI~sELG------ 178 (332)
T PF08841_consen 107 ELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTMLINSELG------ 178 (332)
T ss_dssp HHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHHHHHHHCT------
T ss_pred HHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHHHHHHhhC------
Confidence 34555555555666666554 22 3447899999999988884433332 24456778999999888773
Q ss_pred cccHHHHHHHHHh-cccccc------chHHHHhhcCC--CCc--eeEECCCCcEEEecc---------hhhcccccccCc
Q 025352 79 NLSLYDVEKLKEQ-FSCCAE------DELAYEKTQKS--CEI--EQHTLPDGQVIRIGK---------ERYTVGEALFQP 138 (254)
Q Consensus 79 ~~~~~~~e~iK~~-~~~v~~------~~~~~~~~~~~--~~~--~~~~lpdg~~v~i~~---------~~~~~~E~lF~p 138 (254)
.-+++.+|++|+. ++-|-. ++-..+-+.++ +.. ....+-++..+++.. .|..+-+-.|
T Consensus 179 l~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEkir~vRr~AK~kVF-- 256 (332)
T PF08841_consen 179 LEDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKIRSVRREAKEKVF-- 256 (332)
T ss_dssp -S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHHHHHHHHhhhhhh--
Confidence 1278999999985 222211 11111111111 111 222222333333311 1223333332
Q ss_pred ccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 139 SILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 139 ~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
..-+.+++++..+.---.....+||+||.|+==-+.+-+.++|
T Consensus 257 ----------VtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaL 299 (332)
T PF08841_consen 257 ----------VTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDAL 299 (332)
T ss_dssp ----------HHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHH
Confidence 3445566666654211122356999999999888888888888
No 58
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.49 E-value=0.063 Score=39.86 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=42.9
Q ss_pred EEEEcCCCceeEEEeecceeeccccEEeecC--------HHHHH--HHHHHHHhccCCCccccHHHHHHH-HHhcccc
Q 025352 29 CTVDIGHGKIDIAPVIEGAVQHIASRRFEVG--------GMDLT--KLLAQELGKTNPSVNLSLYDVEKL-KEQFSCC 95 (254)
Q Consensus 29 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~g--------G~~i~--~~l~~~l~~~~~~~~~~~~~~e~i-K~~~~~v 95 (254)
++||+|+++|.++...++.... ...+++| +.+++ +.+.+-++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~-------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI-------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT---------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH-------HHHHHHHHhCCeeeEE
Confidence 6899999999999999888776 4558999 99999 999988865 56778888 7775544
No 59
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.044 Score=52.11 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=49.5
Q ss_pred cCCCeEEeechhhhhhhccCC----------ceEEEEEcCCCceeEEEeecceeeccc-------------cEEeecCHH
Q 025352 5 FNISGFYSSEQAVLSLYAVGR----------ISGCTVDIGHGKIDIAPVIEGAVQHIA-------------SRRFEVGGM 61 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g~----------~tglVVDiG~~~t~v~pv~dG~~~~~~-------------~~~~~~gG~ 61 (254)
.|..-+++++...++++.+|. +.-++-|||++.|+.+.|.--.+-... .....+||.
T Consensus 184 agl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~ 263 (902)
T KOG0104|consen 184 AGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGL 263 (902)
T ss_pred cCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchH
Confidence 356667889999999888773 456899999999999888422211110 112368999
Q ss_pred HHHHHHHHHHhc
Q 025352 62 DLTKLLAQELGK 73 (254)
Q Consensus 62 ~i~~~l~~~l~~ 73 (254)
.++..+..+|..
T Consensus 264 e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 264 EMTMRLRDHLAN 275 (902)
T ss_pred HHHHHHHHHHHH
Confidence 999999988854
No 60
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=94.75 E-value=0.18 Score=45.03 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=41.1
Q ss_pred hHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 167 LLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 167 l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
+-..|+++||.++-+|+.+.|++.| .-.+ ..+|+.+++ +++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~------pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPD------SIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCC------ccHHHHHHHHHhC
Confidence 4568999999999999999999998 2221 246777777 8999999999875
No 61
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.83 Score=43.41 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=49.6
Q ss_pred cCCCeEEeechhhhhhhccCC------------ceEEEEEcCCCceeEEEe--ecceeeccc-cEEeecCHHHHHHHHHH
Q 025352 5 FNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPV--IEGAVQHIA-SRRFEVGGMDLTKLLAQ 69 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~v~pv--~dG~~~~~~-~~~~~~gG~~i~~~l~~ 69 (254)
.|+..+.+++...|.++++|. .+-.-||+||+.++++.. --|..-.-+ ...-.+||++++..+..
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 466678888999999988873 357899999999887665 344332211 22237999999998888
Q ss_pred HHhc
Q 025352 70 ELGK 73 (254)
Q Consensus 70 ~l~~ 73 (254)
.+..
T Consensus 243 hfa~ 246 (727)
T KOG0103|consen 243 HFAK 246 (727)
T ss_pred HHHH
Confidence 8754
No 62
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=93.09 E-value=0.046 Score=48.93 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=40.3
Q ss_pred hHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 167 LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 167 l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
+-+.|+++||.++.+|+.+.+++.| ..+++.+++ +++..-+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~L-------g~~iivPe~------pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLL-------GIEVVVPEY------SQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHh-------CCcEEECCc------ccHHHHHHHHHHhc
Confidence 3445999999999999999999988 235666777 89999999999985
No 63
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=92.99 E-value=0.059 Score=46.31 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=38.8
Q ss_pred HhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEe-CCCCCCCcCCCcceeeehhhhhhc
Q 025352 166 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLV-KPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 166 ~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~-~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.+-..|+++||.+.-+|+.+.|+++|. .++. .+++ |++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg-------~~v~~~p~~------p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILG-------IKAVDTKID------SQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhC-------CCceeCCCC------ccHHHHHHHHHHHH
Confidence 455679999999999999999999982 1222 2445 78999999999984
No 64
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.78 E-value=0.12 Score=44.67 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred ccCCceEEEEEcCCCceeEEEeecceeec
Q 025352 22 AVGRISGCTVDIGHGKIDIAPVIEGAVQH 50 (254)
Q Consensus 22 ~~g~~tglVVDiG~~~t~v~pv~dG~~~~ 50 (254)
..|..+++++|||..+|+|++|.||.+..
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 45888999999999999999999999964
No 65
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=92.72 E-value=0.079 Score=44.86 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=38.8
Q ss_pred cCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.+|+++||.+.-+++.+.|+++|.... ..+.+..+++ +++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~--~~~~v~~~~~------~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAK--MAVAAENHPD------AIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCC--cceEecCCCc------chHHHHHHHHHcC
Confidence 369999999999999999999983211 2344555666 8899999998875
No 66
>PRK13317 pantothenate kinase; Provisional
Probab=91.42 E-value=0.19 Score=43.09 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhccCHH-HHHHhHcCeEecc-CccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhh
Q 025352 147 GIVEQLVHTISTVSSE-NHRQLLENTVLCG-GTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 224 (254)
Q Consensus 147 ~l~~~i~~~i~~~~~d-~~~~l~~nIvl~G-G~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si 224 (254)
+|..+|.+.|..+..- .|..-.++|+++| |.+..|++.++|.+.+++. ..+++.+++ +++..-+||++
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~----~~~~~~p~~------~~~~gAlGAaL 270 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR----NCTPIFLEN------GGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC----CceEEecCC------CchhHHHHHHH
Confidence 4444444444443211 1333347899999 7999999999999887432 346666777 89999999998
Q ss_pred hhc
Q 025352 225 LAK 227 (254)
Q Consensus 225 ~a~ 227 (254)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 874
No 67
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.02 E-value=0.5 Score=40.51 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 24 GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 24 g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
...+++|+|+|+++|.++.+.+|.+... ..+|+|.-.+++.+.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVRLTERFF 152 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHHHHHHHS
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHHHHHHHh
Confidence 5688999999999999999999998874 668999988887764
No 68
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.37 E-value=1.5 Score=38.48 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred cCCceEEEEEcCCCceeEEEeecceeecccc
Q 025352 23 VGRISGCTVDIGHGKIDIAPVIEGAVQHIAS 53 (254)
Q Consensus 23 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~ 53 (254)
+...+=++||+|++.|.+..|.+|+++..-.
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGig 181 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIG 181 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEcccc
Confidence 4567999999999999999999999987643
No 69
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=89.07 E-value=0.4 Score=41.85 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=25.9
Q ss_pred cCCceEEEEEcCCCceeEEEeecceeecc
Q 025352 23 VGRISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 23 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
....+++.+|||..+|+|+||.||.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 44789999999999999999999998754
No 70
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=87.54 E-value=1.2 Score=40.72 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHH-----------HHHHHHHHHhccCCCc
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMD-----------LTKLLAQELGKTNPSV 78 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~-----------i~~~l~~~l~~~~~~~ 78 (254)
..-+=+|||.++|.++.+.+|.++..++ +++||+. +..-+..++...+.+.
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 4556699999999999999999998777 7999984 4555666666655543
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=86.67 E-value=0.49 Score=39.80 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCceeEEEeecce
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~ 47 (254)
..+++.||+|+.+|+++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46899999999999999999996
No 72
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=85.41 E-value=0.79 Score=38.97 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=85.7
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEe----ecCHHHHHHHHHHHHhccCCCccccHHHHHHHHHh------cccc
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRF----EVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQ------FSCC 95 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~----~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~iK~~------~~~v 95 (254)
-+=+.|.+|..-|..++|.+|+++..-.-+. ..||-.++..+...|.. .++++-+. .+|+
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~----------~~~~fsK~~lf~gGa~~i 232 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALAN----------YLERFSKSLLFEGGAAYI 232 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHH----------hhhhccHhheeccccccc
Confidence 3447899999999999999999987533322 56666666666666642 12222111 1222
Q ss_pred ccc--hHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEe
Q 025352 96 AED--ELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVL 173 (254)
Q Consensus 96 ~~~--~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl 173 (254)
.-- .+++.+..+. |++ . |. ..-+.+.+.+.+..+-++.+++ -|++
T Consensus 233 ~gv~sp~ef~~~ake---------~en--------l---e~----------~~~l~e~vvK~v~tllps~~pd---~iyl 279 (374)
T COG2441 233 AGVDSPEEFVKLAKE---------DEN--------L---ET----------YNALIEGVVKDVFTLLPSTYPD---AIYL 279 (374)
T ss_pred ccCCCHHHHHHHhhc---------ccc--------h---HH----------HHHHHHHHHHHHHHhccccCcc---eEEE
Confidence 211 2222211110 000 0 00 0235666777776654444443 3999
Q ss_pred ccCccCccchHHHHHHhh--hcCCCcc--ceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 174 CGGTTSMTGFEDRFQKEA--GLCSSAI--RPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 174 ~GG~s~i~G~~erl~~eL--~~~~~~~--~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
+|=.+++|-|-.-+.+.| ....-.+ .++....-. +.-.+-.||+++|+-
T Consensus 280 SGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~------K~KeaA~GaAiiAna 332 (374)
T COG2441 280 SGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRA------KAKEAAEGAAIIANA 332 (374)
T ss_pred eeecccccchhhHHHHHHHHHHhhcCccceeehhhhhh------hhhhhccchhhhhhh
Confidence 999999998877777777 2222222 333333222 344477899999875
No 73
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=80.99 E-value=2.5 Score=39.43 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHH
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLL 67 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l 67 (254)
.+++|+|||+++|.++.+-+|.+... ..+|+|.-.+++.+
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~f 171 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATSL--FSLSMGCVTWLERY 171 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceeee--eEEeccchHHHHHh
Confidence 35899999999999999988887653 56899998776544
No 74
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=80.12 E-value=2.2 Score=36.96 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
.+++++|+|+++|.++-+.+|.+.. ...+|+|.-.+++.+.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~--~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGE--GVSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeE--EEEEccceEEhHHhhC
Confidence 4579999999999999998888765 3568999988887754
No 75
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=79.36 E-value=0.38 Score=40.83 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=33.3
Q ss_pred eEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 171 TVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 171 Ivl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
|+++||...-..+.+.|++.| +..+.. ++. .+.. +++.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~--~~~~------~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV-PII--IPVE------PQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC-TCE--CECC------GSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC-ceE--ECCC------CCccHHHHHHHhC
Confidence 999999999888888887777 322221 222 2233 6788999999886
No 76
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.17 E-value=4.1 Score=39.43 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCeEEeechhhhh----hhccCCce--EEEEEcCCCceeEEEeecceeecc
Q 025352 6 NISGFYSSEQAVLS----LYAVGRIS--GCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 6 ~~~~v~~~~~~~~a----~~~~g~~t--glVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
+.|.-.+...|.++ +|-+|..+ ++++|||..+|+++-|.+|.+-..
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 34554555555554 34447767 999999999999999998877543
No 77
>PRK10854 exopolyphosphatase; Provisional
Probab=69.65 E-value=5.5 Score=37.31 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHH
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKL 66 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~ 66 (254)
.+++|||||+++|.++-+-+|.+... ..+++|.-.+++.
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe--EEEecceeeHHhh
Confidence 46899999999999999998876553 4468887766664
No 78
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=69.33 E-value=3.4 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.9
Q ss_pred HcCeEeccCccCccchHHHHHHhh
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
...|+++||++.=+-|.+||++.+
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l 308 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERL 308 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-
T ss_pred CceEEEECCCcCCHHHHHHHHhhC
Confidence 357999999999999999999998
No 79
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=32 Score=28.75 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 24 GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 24 g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
|..+.+|+-+..+.|+|+++.+.+--- ...+++++=-.+.+.+.+.|+-.
T Consensus 122 gA~nPvvLYvSGGNTQvIAYse~rYrI-FGETlDIAvGNClDRFAR~lkls 171 (336)
T KOG2708|consen 122 GAQNPVVLYVSGGNTQVIAYSEKRYRI-FGETLDIAVGNCLDRFARVLKLS 171 (336)
T ss_pred cCCCCEEEEEeCCceEEEEEccceeee-ecceehhhhhhhHHHHHHHhcCC
Confidence 457889999999999999998875321 12456777556667777777643
No 80
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=66.77 E-value=5.3 Score=37.16 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
...++|+|+|+++|.++-+-+..+.. ...+|+|.-.+++.+.
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRLTERFF 169 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccce--eEEeecceEEeehhhc
Confidence 67899999999999999987666554 3557888766655544
No 81
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=65.27 E-value=7.4 Score=33.47 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=29.5
Q ss_pred CeEeccCccCccchHHHHHHhh-h-cCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-G-LCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~-~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|||-||.+..+-|.+++++.+ + ..+...++.+..... ...+.-+||..++
T Consensus 248 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~------~~~a~~~GAa~~~ 300 (303)
T PRK13310 248 LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARH------GDAGGVRGAAFLH 300 (303)
T ss_pred EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEccc------CchHHHHhHHHHh
Confidence 3566666666677778888887 3 223222344444433 3455667877665
No 82
>PRK09557 fructokinase; Reviewed
Probab=62.15 E-value=11 Score=32.48 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=29.1
Q ss_pred CeEeccCccCccchHHHHHHhh-hcC-CCccceEEeCCCCCCCcCCCcceeeehhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLC-SSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 225 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~-~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~ 225 (254)
.|||.||.+..+-|.+.+++.+ +.. +...+++|..+.- ...+.-+||..+
T Consensus 247 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~------~~~a~~~GAa~~ 298 (301)
T PRK09557 247 VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALH------GDSSGVRGAAWL 298 (301)
T ss_pred EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEccc------CCchhhhhhhHh
Confidence 3667777777777888888777 332 2222455554443 344556676654
No 83
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=62.14 E-value=15 Score=30.96 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=32.6
Q ss_pred Eeechhhhhhhcc-------CCceEEEEEcCCCceeEEEeecceee
Q 025352 11 YSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQ 49 (254)
Q Consensus 11 ~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~ 49 (254)
.+.++..||.++. .....+|||+|-+.|-...|.+|++.
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 6777777777654 35788999999999999999999885
No 84
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=61.44 E-value=11 Score=32.10 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=30.0
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|||.|+.+..+-|.+++++.+ +. +...++.+..+.. ...++-+||+.++
T Consensus 236 ~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~------~~~~~~~GAa~~~ 286 (291)
T PRK05082 236 CVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHY------RHDAGLLGAALWA 286 (291)
T ss_pred EEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECcc------CCchhhhhHHHHh
Confidence 3667777766667777777777 43 2212444544443 4556677887765
No 85
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=51.73 E-value=7 Score=32.24 Aligned_cols=82 Identities=16% Similarity=0.368 Sum_probs=48.6
Q ss_pred HHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHH-
Q 025352 162 ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD- 240 (254)
Q Consensus 162 d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~e- 240 (254)
|+-+--.+.||++|-+|. |+... -++.....+.++.++...- .|.-.+|+||.+++.+---+...+-.+|
T Consensus 70 DldkyAesDvviVGAGSa--GLsAA--Y~I~~~rPdlkvaIIE~SV-----aPGGGaWLGGQLFSAMvvRKPAhLFL~Ei 140 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSAA--YVIAKNRPDLKVAIIESSV-----APGGGAWLGGQLFSAMVVRKPAHLFLQEI 140 (328)
T ss_pred HHHhhhccceEEECCCcc--cccee--eeeeccCCCceEEEEEeee-----cCCCcccccchhhhhhhhcChHHHHHHHh
Confidence 334444567899987763 33211 1222223456677766542 1678899999999988544433333343
Q ss_pred ---HhhcCccchhcc
Q 025352 241 ---YDESGPSVVHRK 252 (254)
Q Consensus 241 ---y~e~G~~~~~~k 252 (254)
|+++|.-++-|+
T Consensus 141 gvpYedegdYVVVKH 155 (328)
T KOG2960|consen 141 GVPYEDEGDYVVVKH 155 (328)
T ss_pred CCCcccCCCEEEEee
Confidence 788887766543
No 86
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=51.33 E-value=15 Score=31.60 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhccCH-HHHHHhHcCeEeccC-ccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhh
Q 025352 146 HGIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGA 223 (254)
Q Consensus 146 ~~l~~~i~~~i~~~~~-d~~~~l~~nIvl~GG-~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~s 223 (254)
.+|.++|...|.++.. --++.-.++|+++|| .+..|.+.+++..-+.+-. .+.+-+.+ ..+..-+||.
T Consensus 208 aSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~----~~~ifp~h------~~y~gAlGAa 277 (279)
T TIGR00555 208 ASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWS----KKALFLEH------EGYSGAIGAL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcC----ceEEEECC------cchHHHhhhc
Confidence 3566666666655433 224445788999999 8889999999998774322 44554444 4566666665
No 87
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=49.63 E-value=14 Score=33.03 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=21.2
Q ss_pred cCeEeccCccCccchHHHHHHhh
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL 191 (254)
..|+++||++.=|-|.+||++++
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999988
No 88
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=48.71 E-value=15 Score=32.28 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.4
Q ss_pred EEEEcCCCceeEEEeecceeeccccEEeecCHHHH
Q 025352 29 CTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDL 63 (254)
Q Consensus 29 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i 63 (254)
+=+|+|.++|...-+--|.+...+| +++||+.+
T Consensus 148 ~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 148 LNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred EEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 4589999999999999999988777 79999853
No 89
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=45.93 E-value=26 Score=30.27 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhccCHHHHHHhHcCeEeccCcc-CccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhh
Q 025352 146 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTT-SMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 224 (254)
Q Consensus 146 ~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s-~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si 224 (254)
..|...|...+++++++.++.-.=.|+++||.- ...-+.+-+..+|+...-.-+++.+. +..++-.||++
T Consensus 242 ~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~---------~k~ssAvgAA~ 312 (336)
T KOG1794|consen 242 ETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYR---------PKESSAVGAAI 312 (336)
T ss_pred HHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEe---------ecccchHHHHH
Confidence 346667778888888877775334589999953 45556666666662221112455555 56778899998
Q ss_pred hhc-cCC
Q 025352 225 LAK-VVF 230 (254)
Q Consensus 225 ~a~-l~~ 230 (254)
+|. +.+
T Consensus 313 laa~~~~ 319 (336)
T KOG1794|consen 313 LAASLDN 319 (336)
T ss_pred Hhhhhcc
Confidence 874 444
No 90
>PRK09698 D-allose kinase; Provisional
Probab=43.04 E-value=38 Score=29.00 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=28.7
Q ss_pred eEEEEEcCCCceeEEEe-ecceeeccccEEeecC-------HHHHHHHHHHHHhc
Q 025352 27 SGCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVG-------GMDLTKLLAQELGK 73 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~g-------G~~i~~~l~~~l~~ 73 (254)
..+.||+|...+.++.+ .+|.++.... .+.. -+.+.+.+.+.+.+
T Consensus 5 ~~lgidig~t~i~~~l~d~~g~i~~~~~--~~~~~~~~~~~~~~l~~~i~~~~~~ 57 (302)
T PRK09698 5 VVLGIDMGGTHIRFCLVDAEGEILHCEK--KRTAEVIAPDLVSGLGEMIDEYLRR 57 (302)
T ss_pred EEEEEEcCCcEEEEEEEcCCCCEEEEEE--eCCccccchHHHHHHHHHHHHHHHH
Confidence 45789999999999888 4677765322 2222 24555556666654
No 91
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=41.52 E-value=33 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=30.0
Q ss_pred CeEeccCccCc-cchHHHHHHhh-hc-CCC-ccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTSM-TGFEDRFQKEA-GL-CSS-AIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~i-~G~~erl~~eL-~~-~~~-~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|||.|+.+.. +-|.+++++.+ +. .+. ..+++|..+.. ...++-+||..++-
T Consensus 254 ~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~------~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 254 AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQL------GNDAGLVGAADLAR 309 (318)
T ss_pred EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEccc------CCchhhHHHHHHHH
Confidence 46777776553 56888888888 32 221 22344444433 34566778877653
No 92
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=40.90 E-value=16 Score=33.54 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCceeEEEeecceee
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQ 49 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~ 49 (254)
..-++||+|+.+|+|-.+.+|.+-
T Consensus 249 g~ll~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 249 GDFILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred CCEEEEEcCccccchhhccCCCcc
Confidence 457999999999999999999665
No 93
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=36.60 E-value=18 Score=21.07 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=9.3
Q ss_pred eeeeHHHHhhc
Q 025352 234 QHITKADYDES 244 (254)
Q Consensus 234 ~~it~~ey~e~ 244 (254)
-|||++||+|-
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 49999999874
No 94
>PF13941 MutL: MutL protein
Probab=34.22 E-value=26 Score=32.34 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=25.9
Q ss_pred hcc-CCceEEEEEcCCCceeEEEeecceeeccc
Q 025352 21 YAV-GRISGCTVDIGHGKIDIAPVIEGAVQHIA 52 (254)
Q Consensus 21 ~~~-g~~tglVVDiG~~~t~v~pv~dG~~~~~~ 52 (254)
++- +...-++||+|..+|+|-.+.+|.+-...
T Consensus 242 la~~~~g~llvVDIGGATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 242 LAEGGIGDLLVVDIGGATTDVHSVAEGSPEIPG 274 (457)
T ss_pred HHhcccCCEEEEEccCcccchhhhccCCccccc
Confidence 344 67889999999999999999977765544
No 95
>PRK13333 pantothenate kinase; Reviewed
Probab=34.15 E-value=47 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=17.5
Q ss_pred hhhhccCCceEEEEEcCCCceeEEEeecce
Q 025352 18 LSLYAVGRISGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 18 ~a~~~~g~~tglVVDiG~~~t~v~pv~dG~ 47 (254)
+++++. ..++|||+|... ++-.+-+|.
T Consensus 78 ~a~~aa--~~~lVIDaGTAi-TiDvv~~g~ 104 (206)
T PRK13333 78 AACYAI--EDGVVVDAGSAI-TVDIMSNGI 104 (206)
T ss_pred HHhccC--CCeEEEEcCCce-EEEEEcCCc
Confidence 444443 579999999984 454445553
No 96
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=32.07 E-value=1.5e+02 Score=20.18 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=25.7
Q ss_pred EEEEEcCCCceeEEEe-ecceeeccccEEeecCHHHHHHHHHHHHh
Q 025352 28 GCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 28 glVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
-+-||+|...+.++.+ -+|..+........-+...+-+.+.+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~ 48 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIK 48 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHH
Confidence 4789999888888777 46666654222112133344444444443
No 97
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.05 E-value=92 Score=26.66 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.0
Q ss_pred EEeechhhhhhhcc----CCceEEEEEcCCCceeEEEeecceee
Q 025352 10 FYSSEQAVLSLYAV----GRISGCTVDIGHGKIDIAPVIEGAVQ 49 (254)
Q Consensus 10 v~~~~~~~~a~~~~----g~~tglVVDiG~~~t~v~pv~dG~~~ 49 (254)
..++++-.++.++. ...-++|||+|.+.|...-|.++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 34555555555443 23578999999999999999888764
No 98
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=31.79 E-value=21 Score=21.46 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=9.3
Q ss_pred eeeeHHHHhhc
Q 025352 234 QHITKADYDES 244 (254)
Q Consensus 234 ~~it~~ey~e~ 244 (254)
.|||.+||+|-
T Consensus 30 ~~IT~eey~eI 40 (45)
T TIGR01669 30 KLITREQYKVI 40 (45)
T ss_pred CccCHHHHHHH
Confidence 59999999874
No 99
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=31.11 E-value=57 Score=25.73 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=32.3
Q ss_pred HcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
.+.|+++||.++-+-+.+.+.+=+. .+|.+... .-.+-+|++++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~-----~~V~~~~~---------~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG-----RPVVRPEV---------EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT-----SEEEEESS---------STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC-----CceEeCCC---------CchHHHHHHHHHHh
Confidence 4669999999988888888776652 23333332 34577888888753
No 100
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=29.59 E-value=67 Score=27.12 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=14.2
Q ss_pred eEEEEEcCCCceeEEEeecce
Q 025352 27 SGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv~dG~ 47 (254)
.++|||.|.+ |++..|-++.
T Consensus 123 ~~vVVD~GTA-~Tid~v~~~~ 142 (251)
T COG1521 123 AVVVVDFGTA-TTIDLVDEGG 142 (251)
T ss_pred cEEEEEcCCe-EEEEEEcCCC
Confidence 3999999998 5555554444
No 101
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=28.74 E-value=67 Score=22.98 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=25.7
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccch
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGF 183 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~ 183 (254)
+=++|++++.+..-|.++|..++...-.......-. .++||....|||
T Consensus 55 v~Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~~~e--~~t~gl~~~pGl 102 (102)
T TIGR00103 55 IEIDPSLLEEDKEALEDMITEALNDAVKKVEETYKE--LMTSGMPLPPGL 102 (102)
T ss_pred EEECHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCCC
Confidence 334444444333456677777776543333322222 778887644886
No 102
>PRK00976 hypothetical protein; Provisional
Probab=27.97 E-value=90 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=27.8
Q ss_pred hhhhhccCCceEEEEEcCCCceeEEEeecceeecc
Q 025352 17 VLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 17 ~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
++|.+-.+..+-+|+|+|+ .|....|-||+++-.
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvgg 173 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVGA 173 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEcc
Confidence 3444456889999999999 899999999998854
No 103
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.44 E-value=1e+02 Score=26.68 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred eEEEEEcCCCceeEEEeecceeeccccEEeecCHH---HHHHHHHHHHhccC
Q 025352 27 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGM---DLTKLLAQELGKTN 75 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~---~i~~~l~~~l~~~~ 75 (254)
--+=||+|+.+|-++.+-++.++.. ...+.|++ ...+.+.+++.+.+
T Consensus 33 ~~~GIDiGStt~K~Vlld~~~i~~~--~~~~tg~~~~~~a~~~l~~~l~~~g 82 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDGELYGY--NSMRTGNNSPDSAKNALQGIMDKIG 82 (293)
T ss_pred EEEEEEeCchhEEEEEEeCCEEEEE--EeecCCCCHHHHHHHHHHHHHHHcC
Confidence 3467999999999999987765543 33567754 45556666665544
No 104
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.06 E-value=2.9e+02 Score=23.72 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHh
Q 025352 28 GCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 28 glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
-+++|+|.++++|+.. ||.+-.+-..-.|---+.+.+.++..++
T Consensus 3 ila~DvG~GTqDi~~~-d~~~EnSl~mVmPspt~~~A~R~R~~~~ 46 (342)
T COG4012 3 ILAIDVGVGTQDIVAY-DGDPENSLRMVMPSPTSTLAQRLRFMLR 46 (342)
T ss_pred eEEEEecCCceeEEEe-cCCcccceeEeecCchHHHHHHHHHHhc
Confidence 4789999998888765 7754333222223334555555555554
No 105
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=23.64 E-value=1.7e+02 Score=25.14 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=35.5
Q ss_pred cccCCCeEEeechhhhhhhc-------cCCceEEEEEcCCCceeEEEeecceeecc
Q 025352 3 ETFNISGFYSSEQAVLSLYA-------VGRISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~-------~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
+.+++| +++.+..-+++++ .+..+.++|.+|.+. -...|.+|+++..
T Consensus 95 ~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 95 ARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 346776 7788888887763 245789999999884 7778889998764
No 106
>PRK14623 hypothetical protein; Provisional
Probab=23.08 E-value=74 Score=23.03 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=21.3
Q ss_pred CHHHHHHH----HHhccCHHHHHHhHcCeEec-cCccCccchHHHH
Q 025352 147 GIVEQLVH----TISTVSSENHRQLLENTVLC-GGTTSMTGFEDRF 187 (254)
Q Consensus 147 ~l~~~i~~----~i~~~~~d~~~~l~~nIvl~-GG~s~i~G~~erl 187 (254)
-|.++|.. ++++........+.+ ++ ||...+|||...+
T Consensus 63 ~LeDLI~aAvn~A~~k~~~~~~~~m~~---~t~~g~~~~PG~~~~~ 105 (106)
T PRK14623 63 QLEDYLVLTLNKAIEKATEINEAELGA---VAKEGMPDIPGMDNMF 105 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCchhhc
Confidence 44455444 444455444444444 56 4776689997653
No 107
>PRK13329 pantothenate kinase; Reviewed
Probab=22.72 E-value=1.1e+02 Score=25.78 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=13.2
Q ss_pred CceEEEEEcCCCceeEEEe
Q 025352 25 RISGCTVDIGHGKIDIAPV 43 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv 43 (254)
...++|||+|...| +-.|
T Consensus 118 ~~~~lViD~GTA~T-iD~v 135 (249)
T PRK13329 118 ARPCLVVMVGTAVT-VDAL 135 (249)
T ss_pred CCCEEEEECCCcee-EEEE
Confidence 45799999999854 4444
No 108
>PLN02666 5-oxoprolinase
Probab=22.52 E-value=96 Score=32.66 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCceeEEEeecce
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~ 47 (254)
.+.+++|||..+|+|+-| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 578999999999999988 554
No 109
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=21.71 E-value=52 Score=27.48 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=32.9
Q ss_pred eccCc-cCccchHHHHHHhh-hcCCC-ccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 173 LCGGT-TSMTGFEDRFQKEA-GLCSS-AIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 173 l~GG~-s~i~G~~erl~~eL-~~~~~-~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
+-|+. -..|+|.+++++-| .+.+. ..+|++.... .++=+||+|+|.+
T Consensus 191 vDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---------dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 191 VDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---------DGSGVGAAIAAAV 240 (243)
T ss_dssp EESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---------STHHHHHHHHHHH
T ss_pred EeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---------CchHHHHHHHHHH
Confidence 33443 56899999999999 77766 3456665533 4578899988764
No 110
>PRK13326 pantothenate kinase; Reviewed
Probab=21.57 E-value=1.3e+02 Score=25.59 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=12.7
Q ss_pred CCceEEEEEcCCCceeE
Q 025352 24 GRISGCTVDIGHGKIDI 40 (254)
Q Consensus 24 g~~tglVVDiG~~~t~v 40 (254)
+...++|||+|...|-=
T Consensus 124 ~~~~~iVID~GTA~T~D 140 (262)
T PRK13326 124 NINDALVVDLGTACTIF 140 (262)
T ss_pred CCCCEEEEECCCceEEE
Confidence 44579999999985443
No 111
>PRK13318 pantothenate kinase; Reviewed
Probab=21.54 E-value=1.4e+02 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=14.0
Q ss_pred ceEEEEEcCCCceeEEEe-ecc
Q 025352 26 ISGCTVDIGHGKIDIAPV-IEG 46 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv-~dG 46 (254)
.+++|||+|...| +-.| -+|
T Consensus 124 ~~~ivid~GTA~t-~d~v~~~g 144 (258)
T PRK13318 124 GPLIVVDFGTATT-FDVVSAKG 144 (258)
T ss_pred CCEEEEEcCCceE-EEEEcCCC
Confidence 4899999999954 4444 444
No 112
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.36 E-value=1.6e+02 Score=26.78 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=30.5
Q ss_pred eEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccC
Q 025352 27 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTN 75 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~ 75 (254)
--+=||+|+.+|-++.+-|+.++.........--..+.+.+.+.+.+.+
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAG 193 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcC
Confidence 4577999999999999988876655443221112344555555555433
No 113
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.32 E-value=1.3e+02 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=27.9
Q ss_pred HcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCC
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPP 206 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~ 206 (254)
..+|++++|++-..++.+++.+.| +. +...++.|+..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~-~~~~~i~vv~G~ 208 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAES-QINISITLVTGS 208 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhcc-ccCceEEEEECC
Confidence 357999999999999998988888 43 334556666554
No 114
>PRK00976 hypothetical protein; Provisional
Probab=20.10 E-value=1.2e+02 Score=26.73 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=26.9
Q ss_pred CeEeccCccCcc--chHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTSMT--GFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~i~--G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|+|.||.|..+ .+.+++++.+.. + + ..- ...+.-+||+.+|.
T Consensus 266 ~IVLGGGVS~~~e~~L~~~I~e~l~~-----~--~--a~L------G~dAGaiGAA~iA~ 310 (326)
T PRK00976 266 NVVLAGSVGEMDEPDVSERIKELLDK-----K--V--LVL------GKESAAIGLALIAR 310 (326)
T ss_pred EEEEcCccccCchhHHHHHHHHHhcc-----c--c--ccc------CCchHHHHHHHHHH
Confidence 589999999988 566666655511 1 1 111 34567788888774
No 115
>PRK14878 UGMP family protein; Provisional
Probab=20.07 E-value=78 Score=27.70 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.4
Q ss_pred HcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCC
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPE 207 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~ 207 (254)
.++|+|+||.++=.-+.+++.+.+ +. .++++.+|.
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~~ 277 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVPP 277 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCCC
Confidence 357999999999999999999877 32 235666553
Done!