Query 025352
Match_columns 254
No_of_seqs 124 out of 1257
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 100.0 6E-62 2.1E-66 437.3 16.0 247 1-254 146-422 (427)
2 3qb0_A Actin-related protein 4 100.0 8.3E-62 2.8E-66 441.0 16.5 245 1-253 137-497 (498)
3 2fxu_A Alpha-actin-1, actin, a 100.0 2.8E-57 9.6E-62 402.2 20.1 248 1-254 123-375 (375)
4 1k8k_B ARP2, actin-like protei 100.0 3.6E-57 1.2E-61 403.9 16.6 245 1-251 127-388 (394)
5 4fo0_A Actin-related protein 8 100.0 9E-57 3.1E-61 420.5 13.1 251 1-254 221-590 (593)
6 1k8k_A ARP3, actin-like protei 100.0 1.9E-53 6.4E-58 382.7 16.6 246 1-253 130-412 (418)
7 4am6_A Actin-like protein ARP8 100.0 4.7E-46 1.6E-50 341.1 14.0 243 1-254 244-652 (655)
8 1jce_A ROD shape-determining p 99.9 3.6E-23 1.2E-27 180.9 11.7 203 2-231 118-329 (344)
9 3h1q_A Ethanolamine utilizatio 99.7 1.7E-17 5.7E-22 140.1 7.6 158 2-226 115-272 (272)
10 1dkg_D Molecular chaperone DNA 99.7 1.6E-17 5.5E-22 147.0 5.9 196 2-228 158-381 (383)
11 2v7y_A Chaperone protein DNAK; 99.6 5.5E-16 1.9E-20 142.2 7.8 189 3-228 133-350 (509)
12 3qfu_A 78 kDa glucose-regulate 99.5 7.8E-15 2.7E-19 129.9 6.5 190 3-228 177-392 (394)
13 2ych_A Competence protein PILM 99.5 6.5E-14 2.2E-18 123.5 8.7 163 2-191 160-330 (377)
14 4a2a_A Cell division protein F 99.5 1.1E-13 3.6E-18 123.9 10.0 195 2-229 177-394 (419)
15 3i33_A Heat shock-related 70 k 99.4 6.6E-14 2.3E-18 124.5 5.1 190 3-229 182-401 (404)
16 1yuw_A Heat shock cognate 71 k 99.4 7.7E-13 2.6E-17 122.4 9.1 189 3-228 163-379 (554)
17 2kho_A Heat shock protein 70; 99.3 1.7E-12 5.9E-17 121.2 8.3 189 3-228 159-381 (605)
18 3d2f_A Heat shock protein homo 99.3 5E-12 1.7E-16 119.3 7.8 188 3-228 162-382 (675)
19 4gni_A Putative heat shock pro 99.3 6.6E-12 2.3E-16 111.8 7.6 199 3-230 174-402 (409)
20 3js6_A Uncharacterized PARM pr 99.1 1.3E-11 4.4E-16 108.1 2.0 172 5-228 152-336 (355)
21 2zgy_A Plasmid segregation pro 99.1 2.8E-10 9.6E-15 98.1 8.0 177 4-227 137-320 (320)
22 4apw_A ALP12; actin-like prote 99.0 1.3E-10 4.4E-15 100.7 4.7 171 5-228 147-324 (329)
23 4b9q_A Chaperone protein DNAK; 99.0 1.8E-09 6.2E-14 100.8 9.8 193 3-228 159-381 (605)
24 2fsj_A Hypothetical protein TA 98.9 3.5E-10 1.2E-14 98.6 3.6 68 6-73 162-239 (346)
25 1nbw_A Glycerol dehydratase re 98.8 2.6E-09 9.1E-14 96.4 6.1 73 14-95 392-469 (607)
26 2d0o_A DIOL dehydratase-reacti 98.8 8.5E-09 2.9E-13 92.9 9.2 73 14-95 390-467 (610)
27 4ehu_A Activator of 2-hydroxyi 97.3 0.00079 2.7E-08 56.1 8.1 50 165-227 204-253 (276)
28 1hux_A Activator of (R)-2-hydr 95.9 0.0041 1.4E-07 51.8 3.0 47 169-228 210-256 (270)
29 2ews_A Pantothenate kinase; PA 95.3 0.028 9.7E-07 47.1 6.1 50 168-227 237-287 (287)
30 2i7n_A Pantothenate kinase 1; 94.8 0.19 6.5E-06 43.4 9.9 72 147-226 284-358 (360)
31 3cet_A Conserved archaeal prot 93.5 0.054 1.9E-06 46.2 3.7 26 26-51 127-152 (334)
32 2gup_A ROK family protein; sug 92.2 0.37 1.3E-05 40.0 7.1 47 3-51 92-143 (292)
33 1t6c_A Exopolyphosphatase; alp 91.6 0.31 1.1E-05 41.3 6.0 42 25-68 137-178 (315)
34 3r8e_A Hypothetical sugar kina 90.2 0.85 2.9E-05 38.4 7.5 46 4-51 116-169 (321)
35 3mdq_A Exopolyphosphatase; str 89.6 0.45 1.5E-05 40.3 5.3 42 25-68 130-171 (315)
36 3cer_A Possible exopolyphospha 88.5 0.47 1.6E-05 40.7 4.7 43 26-68 146-192 (343)
37 1u6z_A Exopolyphosphatase; alp 84.7 1.6 5.5E-05 39.5 6.2 40 27-68 138-177 (513)
38 3hi0_A Putative exopolyphospha 84.5 1.7 5.7E-05 39.3 6.3 40 25-66 139-178 (508)
39 4db3_A Glcnac kinase, N-acetyl 74.5 2 6.8E-05 36.3 3.2 51 170-226 272-324 (327)
40 3aap_A Ectonucleoside triphosp 71.6 3 0.0001 35.8 3.6 36 26-61 140-177 (353)
41 4htl_A Beta-glucoside kinase; 68.4 3.9 0.00013 33.8 3.6 50 170-227 240-290 (297)
42 2aa4_A Mannac kinase, putative 64.5 2.5 8.4E-05 34.7 1.6 50 170-226 236-286 (289)
43 3vov_A Glucokinase, hexokinase 59.8 3.7 0.00013 34.1 1.8 51 170-226 240-293 (302)
44 2qm1_A Glucokinase; alpha-beta 58.7 3.9 0.00013 34.1 1.8 52 170-227 265-320 (326)
45 2hoe_A N-acetylglucosamine kin 56.0 6.4 0.00022 33.8 2.8 51 170-226 317-369 (380)
46 3epq_A Putative fructokinase; 55.8 7.4 0.00025 32.3 3.0 51 170-226 227-287 (302)
47 2ap1_A Putative regulator prot 48.7 5.4 0.00019 33.3 1.1 45 27-71 25-71 (327)
48 3qbx_A Anhydro-N-acetylmuramic 44.4 10 0.00035 32.7 2.1 23 169-191 285-307 (371)
49 3vgl_A Glucokinase; ROK family 42.4 14 0.00046 30.9 2.6 52 170-227 255-311 (321)
50 3eno_A Putative O-sialoglycopr 39.2 18 0.00062 30.5 2.9 35 168-207 250-285 (334)
51 3cqy_A Anhydro-N-acetylmuramic 38.1 15 0.00051 31.7 2.1 23 169-191 291-313 (370)
52 3cj1_A Ectonucleoside triphosp 37.9 27 0.00092 30.9 3.9 22 26-47 190-211 (456)
53 1saz_A Probable butyrate kinas 34.9 18 0.00062 31.1 2.2 50 169-228 297-348 (381)
54 2ivn_A O-sialoglycoprotein end 34.8 21 0.00073 29.9 2.6 35 168-206 245-279 (330)
55 2yhw_A Bifunctional UDP-N-acet 34.0 22 0.00075 29.7 2.6 27 26-52 30-57 (343)
56 2yhx_A Hexokinase B; transfera 33.0 20 0.00069 31.8 2.2 50 170-228 386-442 (457)
57 2ch5_A NAGK protein; transfera 32.7 24 0.00082 29.4 2.6 25 27-51 7-32 (347)
58 2e2o_A Hexokinase; acetate and 31.4 30 0.001 28.2 3.0 44 170-227 242-286 (299)
59 2q2r_A Glucokinase 1, putative 30.9 16 0.00056 31.0 1.3 51 170-226 307-369 (373)
60 3htv_A D-allose kinase, alloki 30.2 28 0.00095 28.8 2.6 56 171-232 243-303 (310)
61 3zx3_A Ectonucleoside triphosp 30.0 39 0.0013 29.9 3.6 22 26-47 181-202 (452)
62 3ttc_A HYPF, transcriptional r 29.3 53 0.0018 30.6 4.4 33 169-207 601-633 (657)
63 2qm1_A Glucokinase; alpha-beta 28.1 74 0.0025 26.0 4.9 45 4-50 107-158 (326)
64 3djc_A Type III pantothenate k 27.8 1.1E+02 0.0038 24.7 5.7 49 28-76 4-53 (266)
65 1z05_A Transcriptional regulat 24.1 34 0.0011 29.7 2.1 27 26-52 108-135 (429)
66 2itm_A Xylulose kinase, xylulo 23.9 49 0.0017 29.2 3.1 47 169-228 388-434 (484)
67 2aa4_A Mannac kinase, putative 23.7 1E+02 0.0035 24.6 4.9 44 4-50 95-145 (289)
68 1z6r_A MLC protein; transcript 23.5 24 0.00081 30.4 0.9 27 26-52 85-112 (406)
69 1bdg_A Hexokinase; phosphotran 23.1 28 0.00095 30.8 1.3 50 171-229 396-447 (451)
70 2jsh_A Appetite-regulating hor 22.7 17 0.00059 18.4 -0.1 15 233-247 8-22 (26)
71 3vth_A Hydrogenase maturation 21.3 67 0.0023 30.5 3.6 23 169-191 695-717 (761)
72 3zx3_A Ectonucleoside triphosp 20.6 58 0.002 28.8 2.8 20 24-43 32-51 (452)
73 3vgl_A Glucokinase; ROK family 20.1 1.3E+02 0.0046 24.5 5.0 44 28-71 4-48 (321)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-62 Score=437.29 Aligned_cols=247 Identities=28% Similarity=0.449 Sum_probs=215.2
Q ss_pred CCcccCCCeEEeechhhhhhhccC--------CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHh
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVG--------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
|||+|++|+++++.+++||+|++| .+||+|||+|++.|+|+||++|+++.++++++++||+++++++.++|.
T Consensus 146 ~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~ 225 (427)
T 3dwl_A 146 MFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR 225 (427)
T ss_dssp HTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC
T ss_pred HHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHH
Confidence 699999999999999999999998 689999999999999999999999999999999999999999999998
Q ss_pred ccCCCccccHHHHHHHHHhccccccc-hHHHHhhcCCC-CceeEEC--CCCc--EEEecchhhcccccccCcccCCCC-C
Q 025352 73 KTNPSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKSC-EIEQHTL--PDGQ--VIRIGKERYTVGEALFQPSILGLE-A 145 (254)
Q Consensus 73 ~~~~~~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~-~~~~~~l--pdg~--~v~i~~~~~~~~E~lF~p~~~~~~-~ 145 (254)
.++.. ..+.++++++|+++|||+.+ ++++.+....+ ....|++ |||+ .+.++.|||++||.||+|++++.+ .
T Consensus 226 ~~~~~-~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~ 304 (427)
T 3dwl_A 226 DRNEP-DSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFL 304 (427)
T ss_dssp ---------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCC
T ss_pred HcCCC-chhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccC
Confidence 87765 55778999999999999999 77776543322 2366777 8997 788899999999999999999988 5
Q ss_pred CCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC--------------CCccceEEeCCCCCCC
Q 025352 146 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPPEYMP 210 (254)
Q Consensus 146 ~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~--------------~~~~~v~v~~~~~~~~ 210 (254)
.+|+++|.++|++||+|+|+.|++||||+||+|++|||.+||++|| ++. |+.++++|+++|+
T Consensus 305 ~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~--- 381 (427)
T 3dwl_A 305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKR--- 381 (427)
T ss_dssp SCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTT---
T ss_pred CCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCc---
Confidence 8999999999999999999999999999999999999999999999 665 5677899999998
Q ss_pred cCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcccC
Q 025352 211 ENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 211 ~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~~ 254 (254)
|.+++|+||||+|++++|+++||||+||+|+|+++++||++
T Consensus 382 ---r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 382 ---QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp ---CTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred ---cccceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence 99999999999999999999999999999999999999974
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-62 Score=441.02 Aligned_cols=245 Identities=23% Similarity=0.381 Sum_probs=219.7
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccC-----
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTN----- 75 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~----- 75 (254)
|||+|++|+++++++++||+|++|.+||+|||+|++.|+|+||++|+++.++++++++||+++++++.++|...+
T Consensus 137 lFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~ 216 (498)
T 3qb0_A 137 LLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLF 216 (498)
T ss_dssp HHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCST
T ss_pred HHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchh
Confidence 599999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred -------------CCcc--------c-cHHHHHHHHHhccccccc---hHHHHhhcCCCCceeEECCCCcEEEecch-hh
Q 025352 76 -------------PSVN--------L-SLYDVEKLKEQFSCCAED---ELAYEKTQKSCEIEQHTLPDGQVIRIGKE-RY 129 (254)
Q Consensus 76 -------------~~~~--------~-~~~~~e~iK~~~~~v~~~---~~~~~~~~~~~~~~~~~lpdg~~v~i~~~-~~ 129 (254)
+.+. . ++++++++||++|||+.+ +++.... .+.....|+||||+.+.+++| ||
T Consensus 217 ~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~-~~~~~~~yeLPDG~~i~lg~E~Rf 295 (498)
T 3qb0_A 217 AIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTEL-SSTAKRSIESPWNEEIVFDNETRY 295 (498)
T ss_dssp TEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHH-HTCCCEEEECSSSCEEEECHHHHH
T ss_pred hhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhc-cCcCceEEECCCCCEEEECchHhh
Confidence 2211 1 355899999999999986 2222111 112238999999999999999 99
Q ss_pred cccccccCcccCCC------------------------------------------------------------------
Q 025352 130 TVGEALFQPSILGL------------------------------------------------------------------ 143 (254)
Q Consensus 130 ~~~E~lF~p~~~~~------------------------------------------------------------------ 143 (254)
.+||.||+|++++.
T Consensus 296 ~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (498)
T 3qb0_A 296 GFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETG 375 (498)
T ss_dssp HHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC----------------------------------------
T ss_pred hCchhhCCHhHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999987643
Q ss_pred --------------CCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCC---
Q 025352 144 --------------EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKP--- 205 (254)
Q Consensus 144 --------------~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~--- 205 (254)
+..+|+++|.++|++||+|+|+.|++||||+||+|++|||.+||++|| ++.| .++++|+++
T Consensus 376 ~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~ 454 (498)
T 3qb0_A 376 KRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHT 454 (498)
T ss_dssp -------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCT
T ss_pred cccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCC
Confidence 557899999999999999999999999999999999999999999999 8888 789999988
Q ss_pred CCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCc-cchhccc
Q 025352 206 PEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGP-SVVHRKC 253 (254)
Q Consensus 206 ~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~-~~~~~k~ 253 (254)
++ |.+++|+||||+|++++|+++||||+||+|+|+ ++|+|||
T Consensus 455 ~e------r~~s~WiGgsilasl~~f~~~witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 455 IE------RQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp GG------GGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCCHHHHHHTT
T ss_pred Cc------cCccEEcccEEEecCcchhceEEEHHHHhhhCcHhhccccC
Confidence 56 999999999999999999999999999999999 9999999
No 3
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=2.8e-57 Score=402.24 Aligned_cols=248 Identities=43% Similarity=0.669 Sum_probs=225.9
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
+||.+|+|+++++++|+||+|++|.++++|||+|+++|+|+||++|+++.++..++++||+++++++.++|..+++++
T Consensus 123 ~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~ 202 (375)
T 2fxu_A 123 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 202 (375)
T ss_dssp HHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCc
Confidence 489999999999999999999999999999999999999999999999999888999999999999999998876654
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhcC-CCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQK-SCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~-~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.+.+|++|+++||++.+ ++++.+... +.....|++|||+.+.++.+|+.+||.||+|.+++.+..+|+++|.++|
T Consensus 203 ~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i 282 (375)
T 2fxu_A 203 TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSI 282 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHH
Confidence 34678999999999999888 555554322 2223789999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCcee
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 235 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~ 235 (254)
.+||+|+|+.+++|||||||+|++|||.+||++|| ++.|...+++|+.+++ |.+++|+|||++|++++|+++|
T Consensus 283 ~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~------p~~~~w~G~si~a~l~~f~~~~ 356 (375)
T 2fxu_A 283 MKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMW 356 (375)
T ss_dssp HTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTT------TTSHHHHHHHHHHHCGGGGGGS
T ss_pred HhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCC------CCccEEcchHHhhCcccHhhce
Confidence 99999999999999999999999999999999999 8888888899999888 9999999999999999999999
Q ss_pred eeHHHHhhcCccchhcccC
Q 025352 236 ITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 236 it~~ey~e~G~~~~~~k~~ 254 (254)
|||+||+|+|+++++||||
T Consensus 357 itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 357 ITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp EEHHHHHHHCGGGGC----
T ss_pred eeHHHHhhhChHHHhhhcc
Confidence 9999999999999999997
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=3.6e-57 Score=403.85 Aligned_cols=245 Identities=33% Similarity=0.573 Sum_probs=156.4
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
+||.|++|+++++++|+||+|++|.++|+|||+|+++|+|+||++|+++.++..++++||+++++++.++|..+++++
T Consensus 127 ~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~ 206 (394)
T 1k8k_B 127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNH 206 (394)
T ss_dssp ---------------------------CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCT
T ss_pred hhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred cccHHHHHHHHHhccccccc-hHHHHhhc-CCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQ-KSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~-~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..+.+.+|++|+++||++.+ +++++... .+.....|++|||+.+.++.+|+.+||.||+|++++.+..+|+++|.++|
T Consensus 207 ~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i 286 (394)
T 1k8k_B 207 SADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTI 286 (394)
T ss_dssp TTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHH
Confidence 35789999999999999988 55554322 12223789999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC-----------CCccceEEeCCCCCCCcCCCcceeeehhhh
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC-----------SSAIRPTLVKPPEYMPENLTLYSAWIGGAI 224 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~-----------~~~~~v~v~~~~~~~~~~~~~~~~w~G~si 224 (254)
.+||+|+|+.+++|||||||+|++|||.+||++|| .+. |..++++|+.+++ |.+++|+|||+
T Consensus 287 ~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~------~~~~~w~Ggsi 360 (394)
T 1k8k_B 287 QAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPR------RKHMVFLGGAV 360 (394)
T ss_dssp HHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC------------------------
T ss_pred HhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCC------cceeEEhhhHH
Confidence 99999999999999999999999999999999999 766 7777899998888 99999999999
Q ss_pred hhccCCCC-ceeeeHHHHhhcCccchhc
Q 025352 225 LAKVVFPQ-NQHITKADYDESGPSVVHR 251 (254)
Q Consensus 225 ~a~l~~~~-~~~it~~ey~e~G~~~~~~ 251 (254)
+|++++|+ ++||||+||+|+|+++++|
T Consensus 361 lasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 361 LADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp ----------------------------
T ss_pred hhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 99999999 9999999999999999987
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9e-57 Score=420.52 Aligned_cols=251 Identities=18% Similarity=0.297 Sum_probs=191.7
Q ss_pred CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-- 78 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~-- 78 (254)
|||+|+||+++++++++||+|++|++||||||+|++.|+|+||+||+++.++++++++||+++|++|.++|..+++.+
T Consensus 221 lFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~ 300 (593)
T 4fo0_A 221 ILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRE 300 (593)
T ss_dssp HHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTT
T ss_pred HHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred -----cccHHHHHHHHHhccccccc-hHHHH------------------------h-----h------------------
Q 025352 79 -----NLSLYDVEKLKEQFSCCAED-ELAYE------------------------K-----T------------------ 105 (254)
Q Consensus 79 -----~~~~~~~e~iK~~~~~v~~~-~~~~~------------------------~-----~------------------ 105 (254)
..+.++++++|+++||++.+ ..+.. . +
T Consensus 301 ~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~ 380 (593)
T 4fo0_A 301 CQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHR 380 (593)
T ss_dssp CCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC-
T ss_pred cccccchhHHHHHHHHHHhcccccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhh
Confidence 33578999999999999875 11000 0 0
Q ss_pred -------------------------cCCCCceeEECCCCcEEEecchhhcccccccCcccC-------------------
Q 025352 106 -------------------------QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSIL------------------- 141 (254)
Q Consensus 106 -------------------------~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~------------------- 141 (254)
........|++|+|..+.++.+++.+||.+|+|...
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~ 460 (593)
T 4fo0_A 381 SQGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEAL 460 (593)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhccCccccccccccccccccccccccc
Confidence 000012567889999999999999999999998642
Q ss_pred -------------CCCCCCHHHHHHHHHhccC-HHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCcc-----ceE
Q 025352 142 -------------GLEAHGIVEQLVHTISTVS-SENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAI-----RPT 201 (254)
Q Consensus 142 -------------~~~~~~l~~~i~~~i~~~~-~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~-----~v~ 201 (254)
+.+..+|+++|.++|.+|+ .|+|+.|++||||+||+|++|||.+||++|| ++.|... +++
T Consensus 461 ~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~ 540 (593)
T 4fo0_A 461 TALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVD 540 (593)
T ss_dssp ----------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCE
T ss_pred ccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEE
Confidence 1234689999999999998 6999999999999999999999999999999 8888653 589
Q ss_pred EeCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcccC
Q 025352 202 LVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 202 v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~~ 254 (254)
|+++|..+ +|.+++|+||||+|+|++|+++||||+||+|+|+++|+|||+
T Consensus 541 v~~~p~~~---d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 541 VITRPKDM---DPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp EESSGGGC---CTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred EECCCCCC---CCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 99988422 299999999999999999999999999999999999999994
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1.9e-53 Score=382.66 Aligned_cols=246 Identities=30% Similarity=0.448 Sum_probs=221.6
Q ss_pred CCcccCCCeEEeechhhhhhhc---------cCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHH
Q 025352 1 MFETFNISGFYSSEQAVLSLYA---------VGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 71 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~---------~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l 71 (254)
+||.+|++.++++++|+||+|+ .+. +|+|||+|+++|+|+||++|+++.++...+++||+++++++.++|
T Consensus 130 ~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l 208 (418)
T 1k8k_A 130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLL 208 (418)
T ss_dssp HHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHH
Confidence 4899999999999999999998 566 999999999999999999999999999999999999999999999
Q ss_pred hccCCCc--cccHHHHHHHHHhccccccc-hHHHHhhcCCC--CceeEECCCCc-----EEEecchhhcccccccCcccC
Q 025352 72 GKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSC--EIEQHTLPDGQ-----VIRIGKERYTVGEALFQPSIL 141 (254)
Q Consensus 72 ~~~~~~~--~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~--~~~~~~lpdg~-----~v~i~~~~~~~~E~lF~p~~~ 141 (254)
..++..+ ..+.+.+|++|+++||++.+ .+++.+..... ....|++||+. .+.++.+|+.+||.||+|++.
T Consensus 209 ~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~ 288 (418)
T 1k8k_A 209 RDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFA 288 (418)
T ss_dssp HTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGT
T ss_pred HhcCCCCCCHHHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccC
Confidence 8877654 35678999999999999988 55554332111 12689999998 899999999999999999988
Q ss_pred CCCC-CCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC----------------CCccceEEe
Q 025352 142 GLEA-HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLV 203 (254)
Q Consensus 142 ~~~~-~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~----------------~~~~~v~v~ 203 (254)
+.+. .+|+++|.++|.+|++|+|+.+++||||+||+|++|||.+||++|| .+. |+..+++|+
T Consensus 289 ~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~ 368 (418)
T 1k8k_A 289 NPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVI 368 (418)
T ss_dssp CTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEE
T ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEe
Confidence 8774 7999999999999999999999999999999999999999999999 553 667789999
Q ss_pred CCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhccc
Q 025352 204 KPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC 253 (254)
Q Consensus 204 ~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~ 253 (254)
.+++ |.+++|+|||++|++++|+++||||+||+|+|+++++|||
T Consensus 369 ~~~~------~~~~~w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~ 412 (418)
T 1k8k_A 369 THHM------QRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412 (418)
T ss_dssp CCTT------CTTHHHHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred CCCc------cccceeHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence 9988 9999999999999999999999999999999999999987
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=4.7e-46 Score=341.14 Aligned_cols=243 Identities=22% Similarity=0.385 Sum_probs=201.4
Q ss_pred CCcccCCCeEEeechhhhhhhccC-CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC---
Q 025352 1 MFETFNISGFYSSEQAVLSLYAVG-RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP--- 76 (254)
Q Consensus 1 lFe~~~~~~v~~~~~~~~a~~~~g-~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~--- 76 (254)
|||+|++|+++++.+++||+|++| .++|||||+|++.|+|+||++|+++.++++++++||+++++++.++|..+++
T Consensus 244 lFE~fgvpavyl~~qavlAlyasGl~ttGLVVDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~ 323 (655)
T 4am6_A 244 LLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQ 323 (655)
T ss_dssp HHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCC
T ss_pred HHhhcCCCeeeeccHHHHHHHhCCCCCceEEEcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCcc
Confidence 699999999999999999999999 6999999999999999999999999999999999999999999999998875
Q ss_pred --Cc--cccHHHHHHHHHhccccc-cchHHHHhhcCCCCceeE--ECCCC----cEEEecchhhcccccccCcccCCC--
Q 025352 77 --SV--NLSLYDVEKLKEQFSCCA-EDELAYEKTQKSCEIEQH--TLPDG----QVIRIGKERYTVGEALFQPSILGL-- 143 (254)
Q Consensus 77 --~~--~~~~~~~e~iK~~~~~v~-~~~~~~~~~~~~~~~~~~--~lpdg----~~v~i~~~~~~~~E~lF~p~~~~~-- 143 (254)
++ ..+.++++++||++|||+ .|- +.+ ...| ..|++ +.+.++.||+++||.||+|.+++.
T Consensus 324 ~~~f~t~~e~eiVrdIKEk~CyVs~~Di-~~q-------~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~ 395 (655)
T 4am6_A 324 DWKIDSKHGWLLAERLKKNFTTFQDADV-AVQ-------LYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIR 395 (655)
T ss_dssp SCCTTSHHHHHHHHHHHHHHCCCCGGGC-CSE-------EEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTS
T ss_pred ccCCCCcchHHHHHHHHHheEEEcccch-hhh-------hhcceeccCCCCCcceEEEECCeehhCchhcCChhhccccc
Confidence 22 457889999999999995 331 000 0122 23543 468899999999999999975310
Q ss_pred -----------------------------------------------------------------------------CCC
Q 025352 144 -----------------------------------------------------------------------------EAH 146 (254)
Q Consensus 144 -----------------------------------------------------------------------------~~~ 146 (254)
...
T Consensus 396 ~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (655)
T 4am6_A 396 TSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFA 475 (655)
T ss_dssp CCCCCCHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCC
T ss_pred ccccccchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccc
Confidence 014
Q ss_pred CHHHHHHHHHhc-c---CHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCC--------------------------
Q 025352 147 GIVEQLVHTIST-V---SSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS-------------------------- 195 (254)
Q Consensus 147 ~l~~~i~~~i~~-~---~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~-------------------------- 195 (254)
+|..+|.+||.+ | +...-+++++||+++||+|++|||.-.|...| ...|
T Consensus 476 pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~ 555 (655)
T 4am6_A 476 PLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHY 555 (655)
T ss_dssp CHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhh
Confidence 888999999984 3 34444599999999999999999998887777 2111
Q ss_pred -----------------------------------------CccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCce
Q 025352 196 -----------------------------------------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQ 234 (254)
Q Consensus 196 -----------------------------------------~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~ 234 (254)
.-++|+|+.+|..++ +++++|+|||+||++++|.++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d---~~~~~W~GgSvla~l~~f~e~ 632 (655)
T 4am6_A 556 VNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMN---PALIIWKGASVLAQIKLVEEL 632 (655)
T ss_dssp CSCCSSSCCSSTTSTTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSC---GGGHHHHHHHHHTTSHHHHHH
T ss_pred ccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccC---cceeEEecceeeeecccHhhe
Confidence 013589999998444 699999999999999999999
Q ss_pred eeeHHHHhhcCccchhcccC
Q 025352 235 HITKADYDESGPSVVHRKCF 254 (254)
Q Consensus 235 ~it~~ey~e~G~~~~~~k~~ 254 (254)
||||+||+|+|++++++||+
T Consensus 633 wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 633 FITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp CEEHHHHHHHGGGGGGTSCS
T ss_pred eecHHHHhhhcchheEeccc
Confidence 99999999999999999994
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.89 E-value=3.6e-23 Score=180.91 Aligned_cols=203 Identities=17% Similarity=0.251 Sum_probs=154.2
Q ss_pred CcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
+|.+|++.+.++++|+||+++++. .+.+|||+|+++|+++++..|.++.. ...++||+++++.+.+.+.++ +
T Consensus 118 ~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~~--~~~~lGG~~id~~l~~~l~~~-~ 194 (344)
T 1jce_A 118 GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTW--ESIRIAGDEMDEAIVQYVRET-Y 194 (344)
T ss_dssp HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEEE--EEESCSHHHHHHHHHHHHHHH-H
T ss_pred HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEee--CCCCccChhHHHHHHHHHHHH-h
Confidence 577899999999999999999986 68999999999999999999988753 568999999999999998753 2
Q ss_pred CccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCc--EEEecchhhcccccccCcccCCCCCCCHHHHHHH
Q 025352 77 SVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ--VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVH 154 (254)
Q Consensus 77 ~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~--~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~ 154 (254)
...++.+.+|++|+++++...+...... ........+.+|. .+.++.+++. .+|+|.+ ..+.+.|.+
T Consensus 195 ~~~~~~~~ae~~K~~l~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~ 263 (344)
T 1jce_A 195 RVAIGERTAERVKIEIGNVFPSKENDEL---ETTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRT 263 (344)
T ss_dssp CEECCHHHHHHHHHHHCBCSCCHHHHHC---EEEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHhccCccccCCcc---eEEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHH
Confidence 2245678999999999987654211000 0000111233664 4556655443 3454432 368899999
Q ss_pred HHhccCHHHHHHhH-cCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc-CCC
Q 025352 155 TISTVSSENHRQLL-ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFP 231 (254)
Q Consensus 155 ~i~~~~~d~~~~l~-~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l-~~~ 231 (254)
++.+++.+.+.+++ ++|+|+||+|++|||.++|++++.. ++...++ |.+++|.||++++.. ++|
T Consensus 264 ~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~-------~v~~~~~------p~~ava~Gaa~~a~~~~~~ 329 (344)
T 1jce_A 264 TLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI-------SVIRSEE------PLTAVAKGAGMVLDKVNIL 329 (344)
T ss_dssp HHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS-------CEEECSS------TTTHHHHHHHHGGGCHHHH
T ss_pred HHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCC-------CccccCC------hHHHHHHHHHHHHhChHHH
Confidence 99999988888888 7999999999999999999999821 2333455 889999999999984 555
No 9
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.70 E-value=1.7e-17 Score=140.14 Aligned_cols=158 Identities=22% Similarity=0.299 Sum_probs=125.0
Q ss_pred CcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCcccc
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS 81 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~ 81 (254)
++.+|++...+..++.|+++++|..+++|||+|+++|.++++.+|.++.. ..+++||.++++.+.+.+. .+
T Consensus 115 ~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~--~~~~~Gg~~~~~~l~~~l~-------~~ 185 (272)
T 3h1q_A 115 VAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT--FDEPTGGTHLSLVLAGSYK-------IP 185 (272)
T ss_dssp HHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE--CCBSCCHHHHHHHHHHHHT-------CC
T ss_pred HHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE--ecCCCcHHHHHHHHHHHhC-------CC
Confidence 57789999999999999999999999999999999999999999998854 4579999999999999885 36
Q ss_pred HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCH
Q 025352 82 LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSS 161 (254)
Q Consensus 82 ~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~ 161 (254)
.+.++++|++++. ..++. .+.+.++ ..+.+.+.+.+++++
T Consensus 186 ~~~ae~~k~~~~~----~~~~~--------------------------~~~~~~~---------~~i~~~i~~~l~~~~- 225 (272)
T 3h1q_A 186 FEEAETIKKDFSR----HREIM--------------------------RVVRPVI---------EKMALIVKEVIKNYD- 225 (272)
T ss_dssp HHHHHHHHHSSTT----HHHHH--------------------------HHHHHHH---------HHHHHHHHHHTTTSC-
T ss_pred HHHHHHHHHhcCC----HHHHH--------------------------HHHHHHH---------HHHHHHHHHHHHhcC-
Confidence 7889999988651 11111 1111111 246777888887776
Q ss_pred HHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 162 ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 162 d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
...+|+|+||+|++||+.++|++++. .+|..+++ |.++.|+|++++|
T Consensus 226 -----~~~~ivL~GG~a~~~~l~~~l~~~l~-------~~v~~~~~------p~~a~a~Gaal~a 272 (272)
T 3h1q_A 226 -----QTLPVYVVGGTAYLTGFSEEFSRFLG-------KEVQVPIH------PLLVTPLGIALFG 272 (272)
T ss_dssp -----SSCCEEEESGGGGSTTHHHHHHHHHS-------SCCBCCSS------GGGHHHHHHHTTC
T ss_pred -----CCCEEEEECCccchhhHHHHHHHHhC-------CCccccCC------hHHHHHHHHHhcC
Confidence 12599999999999999999999982 13334456 8999999999875
No 10
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.69 E-value=1.6e-17 Score=146.97 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=133.6
Q ss_pred CcccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEeecc------eee-ccccEEeecCHHHHHHHHH
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVIEG------AVQ-HIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~dG------~~~-~~~~~~~~~gG~~i~~~l~ 68 (254)
++..|++.+.++++|.||+++++. .+.+|+|+|+++|+++.+..+ ... .......++||+++++.+.
T Consensus 158 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 237 (383)
T 1dkg_D 158 GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLI 237 (383)
T ss_dssp HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHH
T ss_pred HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 356788899999999999998764 378999999999999988754 221 1122346899999999999
Q ss_pred HHHhcc-----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCC-c--EEEecchhhcccc
Q 025352 69 QELGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDG-Q--VIRIGKERYTVGE 133 (254)
Q Consensus 69 ~~l~~~-----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg-~--~v~i~~~~~~~~E 133 (254)
+.+..+ +.++..+ .+.+|++|+.++..... .+. -+..+..++| . .+.++.+.+.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~--~i~------i~~~~~~~~G~~~~~~~it~~~~~--- 306 (383)
T 1dkg_D 238 NYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVN------LPYITADATGPKHMNIKVTRAKLE--- 306 (383)
T ss_dssp HHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE--EEE------EEEEEEETTEEEEEEEEEEHHHHH---
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce--EEE------EecccccCCCCeeEEEEEeHHHHH---
Confidence 988653 2222111 35678888887664311 000 0012344455 2 2355544442
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 213 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~ 213 (254)
.+|+|.+ ..+.+.|.+++.+++. .....++|+|+||+|++||+.++|++++.. ++....+
T Consensus 307 ~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~-------~v~~~~~------ 366 (383)
T 1dkg_D 307 SLVEDLV-----NRSIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK-------EPRKDVN------ 366 (383)
T ss_dssp HHSHHHH-----HHHHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS-------CCBCSSC------
T ss_pred HHHHHHH-----HHHHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhCC-------CCCCCcC------
Confidence 3444432 3577888888888753 334458999999999999999999999821 2344556
Q ss_pred Ccceeeehhhhhhcc
Q 025352 214 TLYSAWIGGAILAKV 228 (254)
Q Consensus 214 ~~~~~w~G~si~a~l 228 (254)
|.+++|.||+++|++
T Consensus 367 p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 367 PDEAVAIGAAVQGGV 381 (383)
T ss_dssp TTTHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999999875
No 11
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.62 E-value=5.5e-16 Score=142.17 Aligned_cols=189 Identities=17% Similarity=0.238 Sum_probs=131.2
Q ss_pred cccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHhcc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
+..|++.+.++++|.||++++|. .+.+|+|+|+++++++.+. +|.. +.......++||+++++.+.+.+..+
T Consensus 133 ~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~ 212 (509)
T 2v7y_A 133 RIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ 212 (509)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred HHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 56788999999999999999875 4789999999999999876 3543 22223446899999999999887543
Q ss_pred -----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEEC------CCC---cEEEecchhhcccc
Q 025352 75 -----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL------PDG---QVIRIGKERYTVGE 133 (254)
Q Consensus 75 -----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l------pdg---~~v~i~~~~~~~~E 133 (254)
+.++..+ ...+|.+|+.++.... ..+.+ ++| ..+.++.+.+ |
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~--------------~~i~l~~~~~~~~G~~~~~~~itr~~f---e 275 (509)
T 2v7y_A 213 FKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQ--------------TQISLPFISANENGPLHLEMTLTRAKF---E 275 (509)
T ss_dssp HHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSE--------------EEEEEEEEEEETTEEEEEEEEEEHHHH---H
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc--------------EEEEEeccccCCCCCeeEEEEEEHHHH---H
Confidence 3222111 2567778877665421 12222 233 2234544443 2
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 213 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~ 213 (254)
.+|+|.+ ..+.+.|.+++.++.. .....++|+|+||+|++|++.++|++++.. .+....+
T Consensus 276 ~l~~~~~-----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~-------~~~~~~~------ 335 (509)
T 2v7y_A 276 ELSAHLV-----ERTMGPVRQALQDAGL--TPADIDKVILVGGSTRIPAVQEAIKRELGK-------EPHKGVN------ 335 (509)
T ss_dssp HHTHHHH-----HTTHHHHHHHHHHHTC--CGGGCSEEEEESGGGGCHHHHHHHHHHHSS-------CCBCCSC------
T ss_pred HHHHHHH-----HHHHHHHHHHHHHcCC--ChhHCcEEEEECCcccChHHHHHHHHHhCC-------CcCcCCC------
Confidence 3444422 3577888888887753 334568999999999999999999999821 2334455
Q ss_pred Ccceeeehhhhhhcc
Q 025352 214 TLYSAWIGGAILAKV 228 (254)
Q Consensus 214 ~~~~~w~G~si~a~l 228 (254)
|..++|.||+++|..
T Consensus 336 p~~aVa~Gaa~~a~~ 350 (509)
T 2v7y_A 336 PDEVVAIGAAIQGGV 350 (509)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred chhhhHhhHHHHHHH
Confidence 889999999999864
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.52 E-value=7.8e-15 Score=129.95 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=121.6
Q ss_pred cccCCCeEEeechhhhhhhccCCc------eEEEEEcCCCceeEEEee--cceee-ccccEEeecCHHHHHHHHHHHHhc
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGRI------SGCTVDIGHGKIDIAPVI--EGAVQ-HIASRRFEVGGMDLTKLLAQELGK 73 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~~------tglVVDiG~~~t~v~pv~--dG~~~-~~~~~~~~~gG~~i~~~l~~~l~~ 73 (254)
+..|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. ++... .......++||+++++.+.+.+..
T Consensus 177 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~ 256 (394)
T 3qfu_A 177 TIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIK 256 (394)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred HHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHHH
Confidence 457889999999999999988643 459999999999888774 33321 112233689999999999988743
Q ss_pred c-----CCCccccH-------HHHHHHHHhccccccchHHHHhhcCCCCceeEEC---CCCcE--EEecchhhccccccc
Q 025352 74 T-----NPSVNLSL-------YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL---PDGQV--IRIGKERYTVGEALF 136 (254)
Q Consensus 74 ~-----~~~~~~~~-------~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l---pdg~~--v~i~~~~~~~~E~lF 136 (254)
+ +.....+. ..+|.+|+.++... ...+.+ .+|.. +.+..+.+ |.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~--------------~~~~~~~~~~~~~~~~~~i~r~~~---~~~~ 319 (394)
T 3qfu_A 257 AFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQM--------------STRIEIDSFVDGIDLSETLTRAKF---EELN 319 (394)
T ss_dssp HHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCS--------------EEEEEEEEEETTEEEEEEEEHHHH---HHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCC--------------cEEEEEEeccCCceeEEEEEHHHH---HHHH
Confidence 1 11111111 23444444432211 011222 13332 33333322 2233
Q ss_pred CcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcc
Q 025352 137 QPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLY 216 (254)
Q Consensus 137 ~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~ 216 (254)
.|.+ ..+.+.|.++|.++..+ ....++|+|+||+|++|++.++|++.+. ..++..+.+ |..
T Consensus 320 ~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~------~~~v~~~~~------p~~ 380 (394)
T 3qfu_A 320 LDLF-----KKTLKPVEKVLQDSGLE--KKDVDDIVLVGGSTRIPKVQQLLESYFD------GKKASKGIN------PDE 380 (394)
T ss_dssp HHHH-----HHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHTT------TCCCBCCSC------TTT
T ss_pred HHHH-----HHHHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcC------CCCCCCCcC------HHH
Confidence 3221 35677788888776543 3456899999999999999999999871 123445556 889
Q ss_pred eeeehhhhhhcc
Q 025352 217 SAWIGGAILAKV 228 (254)
Q Consensus 217 ~~w~G~si~a~l 228 (254)
++|.||+++|.+
T Consensus 381 ava~Gaa~~a~~ 392 (394)
T 3qfu_A 381 AVAYGAAVQAGV 392 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 13
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.48 E-value=6.5e-14 Score=123.47 Aligned_cols=163 Identities=14% Similarity=0.180 Sum_probs=107.9
Q ss_pred CcccCCCeEEeechhhhhhhccC-------CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhcc
Q 025352 2 FETFNISGFYSSEQAVLSLYAVG-------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 74 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g-------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~ 74 (254)
++..|+....+..+|+|++.+++ ..+.+|||+|+++|+++.+.+|.+... ..+++||+++++.+.+.+.
T Consensus 160 ~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~--~~~~~GG~~i~~~i~~~~~-- 235 (377)
T 2ych_A 160 LRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV--RVLTLSGKDFTEAIARSFN-- 235 (377)
T ss_dssp HHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE--EEESCSHHHHHHHHHHHTT--
T ss_pred HHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE--EeeechHHHHHHHHHHHhC--
Confidence 46678899999999999998864 234699999999999999999998764 5689999999999998542
Q ss_pred CCCccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhh-cccccccCcccCCCCCCCHHHHHH
Q 025352 75 NPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERY-TVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 75 ~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
.+.+.+|++|+++++...+..+.. ..+++|+ ....++.+.+ .+.+.++ ..+.+.|.
T Consensus 236 -----~~~~~aE~~K~~~~~~~~~~~~~~--------~~i~~~~-~~~~i~~~~~~~~i~~~~---------~~i~~~i~ 292 (377)
T 2ych_A 236 -----LDLLAAEEVKRTYGMATLPTEDEE--------LLLDFDA-ERERYSPGRIYDAIRPVL---------VELTQELR 292 (377)
T ss_dssp -----CCHHHHHHHHHHTC----------------------------------CHHHHHHHHH---------HHHHHHHH
T ss_pred -----CCHHHHHHHHhhcccccccccccc--------ccccccc-ccccCCHHHHHHHHHHHH---------HHHHHHHH
Confidence 367889999999887654311100 1112322 2222222111 1111111 24667777
Q ss_pred HHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh
Q 025352 154 HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 154 ~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL 191 (254)
+++..++...+....++|+|+||+|++||+.+++++++
T Consensus 293 ~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l 330 (377)
T 2ych_A 293 RSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTL 330 (377)
T ss_dssp HHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHh
Confidence 77776655556667889999999999999999999998
No 14
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.48 E-value=1.1e-13 Score=123.87 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=127.7
Q ss_pred CcccCCCeEEeechhhhhhhccCC-----ceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCC
Q 025352 2 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 2 Fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~ 76 (254)
++..|+.-..++.+|+|+++++.. .+.+|||+|+++|+++.+.+|.+... ..+++||+++|+.+.+.+.
T Consensus 177 ~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~GG~~it~dIa~~l~---- 250 (419)
T 4a2a_A 177 LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIKDVSAVLD---- 250 (419)
T ss_dssp HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCCHHHHHHHHHHHHT----
T ss_pred HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccHHHHHHHHHHHHHC----
Confidence 356788888999999999988764 36899999999999999999998864 5589999999999998874
Q ss_pred CccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECC--CC-cEEEecch-hhcccccccCcccCCCCCCCHHHHH
Q 025352 77 SVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP--DG-QVIRIGKE-RYTVGEALFQPSILGLEAHGIVEQL 152 (254)
Q Consensus 77 ~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp--dg-~~v~i~~~-~~~~~E~lF~p~~~~~~~~~l~~~i 152 (254)
.+.+.+|.+|.+++....+. + ....+++| +| ....++.. -..+.+..+ ..+.+.|
T Consensus 251 ---~~~~~AE~iK~~~g~a~~~~-~--------~~~~i~v~~~~~~~~~~is~~~l~~ii~p~v---------eei~~~V 309 (419)
T 4a2a_A 251 ---TSFEESERLIITHGNAVYND-L--------KEEEIQYRGLDGNTIKTTTAKKLSVIIHARL---------REIMSKS 309 (419)
T ss_dssp ---CCHHHHHHHHHHHCCSCCTT-C--------CCCEEEEECTTSCSEEEEEHHHHHHHHHHHH---------HHHHHHH
T ss_pred ---CCHHHHHHHHHHhccCcccC-C--------CCceEEEeecCCccceEEcHHHHHHHHHHHH---------HHHHHHH
Confidence 47889999999987653221 0 00122222 22 12333222 112222222 2466777
Q ss_pred HHHHhccCH---HH-HHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeC-----CCCCCCc-----CCCccee
Q 025352 153 VHTISTVSS---EN-HRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVK-----PPEYMPE-----NLTLYSA 218 (254)
Q Consensus 153 ~~~i~~~~~---d~-~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~-----~~~~~~~-----~~~~~~~ 218 (254)
.+.|+.... +. .....+.|+||||+|++||+.+.+++.+.+ ++++.. +.. +.. -.|.|+.
T Consensus 310 ~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~-----~vri~~~~~~~p~~-~~~~~~~~~~P~~~t 383 (419)
T 4a2a_A 310 KKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS-----PVRTGCYANSDRPS-IINADEVANDPSFAA 383 (419)
T ss_dssp HHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS-----CEEECCGGGSSSCC-CBTCHHHHTCGGGHH
T ss_pred HHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC-----CeEEEecCCCCchh-ccCcccccCCchHHH
Confidence 777776542 22 345678899999999999999999999822 233333 211 100 0278888
Q ss_pred eehhhhhhccC
Q 025352 219 WIGGAILAKVV 229 (254)
Q Consensus 219 w~G~si~a~l~ 229 (254)
-+|-.+++...
T Consensus 384 ~~Gl~~~~~~~ 394 (419)
T 4a2a_A 384 AFGNVFAVSEN 394 (419)
T ss_dssp HHHTTCC----
T ss_pred HHHHHHHHhhc
Confidence 88888877543
No 15
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.43 E-value=6.6e-14 Score=124.52 Aligned_cols=190 Identities=17% Similarity=0.258 Sum_probs=121.1
Q ss_pred cccCCCeEEeechhhhhhhccCCc---------eEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGRI---------SGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQE 70 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~~---------tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~ 70 (254)
+..|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. +|.. +.......++||+++++.+.+.
T Consensus 182 ~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 261 (404)
T 3i33_A 182 TITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSH 261 (404)
T ss_dssp HHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred HHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 457889999999999999988643 459999999999998874 4332 2222334689999999999988
Q ss_pred Hhcc-----CCCccccH-------HHHHHHHHhccccccchHHHHhhcCCCCceeEEC---CCCcE--EEecchhhcccc
Q 025352 71 LGKT-----NPSVNLSL-------YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL---PDGQV--IRIGKERYTVGE 133 (254)
Q Consensus 71 l~~~-----~~~~~~~~-------~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l---pdg~~--v~i~~~~~~~~E 133 (254)
+..+ +.....+. ..+|.+|+.++... ...+.+ .+|.. +.+..+.+ |
T Consensus 262 l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~--------------~~~~~~~~~~~g~~~~~~i~r~~~---~ 324 (404)
T 3i33_A 262 LAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSST--------------QASIEIDSLYEGVDFYTSITRARF---E 324 (404)
T ss_dssp HHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSS--------------EEEEEEEEEETTEEEEEEEEHHHH---H
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCc--------------ceEEEEeeccCCceeEEEEcHHHH---H
Confidence 7431 11111111 33445555433211 011111 13332 33333322 2
Q ss_pred cccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcC
Q 025352 134 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 134 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~ 212 (254)
.++.|.+ ..+.+.|.+.+.++..+ ....++|+|+||+|++|++.++|++.+ .. ++..+.+
T Consensus 325 ~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-------~v~~~~~----- 385 (404)
T 3i33_A 325 ELNADLF-----RGTLEPVEKALRDAKLD--KGQIQEIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSIN----- 385 (404)
T ss_dssp HHTHHHH-----HHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSC-----
T ss_pred HHHHHHH-----HHHHHHHHHHHHHcCCC--HhhCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCcC-----
Confidence 2333221 24667777777765432 244578999999999999999999987 32 3444556
Q ss_pred CCcceeeehhhhhhccC
Q 025352 213 LTLYSAWIGGAILAKVV 229 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l~ 229 (254)
|..+++.||+++|.+.
T Consensus 386 -p~~ava~Gaa~~a~~l 401 (404)
T 3i33_A 386 -PDEAVAYGAAVQAAIL 401 (404)
T ss_dssp -TTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 8899999999998753
No 16
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.38 E-value=7.7e-13 Score=122.38 Aligned_cols=189 Identities=16% Similarity=0.248 Sum_probs=123.1
Q ss_pred cccCCCeEEeechhhhhhhccCC-------ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHHHHHHh
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELG 72 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l~~~l~ 72 (254)
+..|++.+.++++|.||++++|. .+.+|+|+|+++++++.+. +|.. +.......++||+++++.+.+.+.
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999998763 5689999999999999886 6754 222334468999999999998874
Q ss_pred c-----cCCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC---CCc--EEEecchhhcccccc
Q 025352 73 K-----TNPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP---DGQ--VIRIGKERYTVGEAL 135 (254)
Q Consensus 73 ~-----~~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp---dg~--~v~i~~~~~~~~E~l 135 (254)
. .+.++..+ ...+|.+|+.++.... ..+.++ +|. .+.+..+.+ |.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~--------------~~i~i~~~~~g~~~~~~ltr~~~---e~l 305 (554)
T 1yuw_A 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQ--------------ASIEIDSLYEGIDFYTSITRARF---EEL 305 (554)
T ss_dssp HHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSE--------------EEEEETTCSSSCCEEEEEEHHHH---HHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCce--------------EEEEEeeccCCceEEEEEEHHHH---HHH
Confidence 3 12221111 2456666766543321 222332 343 233433332 222
Q ss_pred cCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCC
Q 025352 136 FQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLT 214 (254)
Q Consensus 136 F~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~ 214 (254)
+.|-+ ..+.+.|.+++.++.. ...-.+.|+|+||+|++|++.++|++.+ .. ++....+ |
T Consensus 306 ~~~~~-----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~f~~~-------~v~~~~n------p 365 (554)
T 1yuw_A 306 NADLF-----RGTLDPVEKALRDAKL--DKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSIN------P 365 (554)
T ss_dssp THHHH-----HHTTHHHHHHHHHTTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCCSC------T
T ss_pred HHHHH-----HHHHHHHHHHHHHcCC--ChhhCcEEEEECCcccChHHHHHHHHHcCCC-------ccccCCC------c
Confidence 22211 1345667777766532 2234578999999999999999999887 22 2334455 8
Q ss_pred cceeeehhhhhhcc
Q 025352 215 LYSAWIGGAILAKV 228 (254)
Q Consensus 215 ~~~~w~G~si~a~l 228 (254)
..+++.||+++|..
T Consensus 366 ~~aVA~Gaa~~a~~ 379 (554)
T 1yuw_A 366 DEAVAYGAAVQAAI 379 (554)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 89999999999863
No 17
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.33 E-value=1.7e-12 Score=121.19 Aligned_cols=189 Identities=18% Similarity=0.203 Sum_probs=123.5
Q ss_pred cccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEeec------cee-eccccEEeecCHHHHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVIE------GAV-QHIASRRFEVGGMDLTKLLAQ 69 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~d------G~~-~~~~~~~~~~gG~~i~~~l~~ 69 (254)
+..|+..+.++++|.||++++|. .+.+|+|+|+++++++.+.- |.. +.......++||+++++.+.+
T Consensus 159 ~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~ 238 (605)
T 2kho_A 159 RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLIN 238 (605)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHH
T ss_pred HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHH
Confidence 45678889999999999998864 35799999999999998863 432 111223458999999999998
Q ss_pred HHhcc-----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEEC------CCC-c--EEEecchh
Q 025352 70 ELGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL------PDG-Q--VIRIGKER 128 (254)
Q Consensus 70 ~l~~~-----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l------pdg-~--~v~i~~~~ 128 (254)
.+..+ +.++..+ ...+|.+|+.++.... ..+.+ ++| . .+.++.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~--------------~~i~l~~~~~~~~G~~~~~~~itr~~ 304 (605)
T 2kho_A 239 YLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ--------------TDVNLPYITADATGPKHMNIKVTRAK 304 (605)
T ss_dssp HHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSE--------------EEEEEEEEEEETTEEEEEEEEEEHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc--------------eEEEecccccCCCCceEEEEEEeHHH
Confidence 87542 2221111 2456666766544321 11122 223 1 22444333
Q ss_pred hcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCC
Q 025352 129 YTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEY 208 (254)
Q Consensus 129 ~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~ 208 (254)
+ |.++.|-+ ..+.+.|.+++..... ...-.+.|+|+||+|++|++.+++++.+.. .+....+
T Consensus 305 f---e~l~~~~~-----~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~fg~-------~~~~~~n- 366 (605)
T 2kho_A 305 L---ESLVEDLV-----NRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK-------EPRKDVN- 366 (605)
T ss_dssp H---HTTCCSTT-----GGGTSHHHHHHHTTTC--CTTTCSEEEEESGGGGSHHHHHHHHHHHSS-------CCBCSSC-
T ss_pred H---HHHHHHHH-----HHHHHHHHHHHHHcCC--ChhhCceEEEECCcccChHHHHHHHHhcCC-------CcCcCCC-
Confidence 2 23344321 3567778888877642 223347899999999999999999988721 1233445
Q ss_pred CCcCCCcceeeehhhhhhcc
Q 025352 209 MPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 209 ~~~~~~~~~~w~G~si~a~l 228 (254)
|..+++.||+++|..
T Consensus 367 -----pd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 367 -----PDEAVAIGAAVQGGV 381 (605)
T ss_dssp -----TTTHHHHHHHHHHTT
T ss_pred -----cchHHHHHHHHHHHH
Confidence 789999999999875
No 18
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.27 E-value=5e-12 Score=119.30 Aligned_cols=188 Identities=14% Similarity=0.203 Sum_probs=122.2
Q ss_pred cccCCCeEEeechhhhhhhccCC------------ceEEEEEcCCCceeEEEee--ccee-eccccEEeecCHHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLL 67 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~gG~~i~~~l 67 (254)
+..|+..+.++++|.||++++|. .+.+|+|+|+++++++.+. +|.. +.......++||+++++.+
T Consensus 162 ~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l 241 (675)
T 3d2f_A 162 RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241 (675)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHH
Confidence 34688899999999999987642 4689999999999999885 6654 2322334689999999999
Q ss_pred HHHHhc-----cCCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECC---CCc--EEEecchhh-
Q 025352 68 AQELGK-----TNPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP---DGQ--VIRIGKERY- 129 (254)
Q Consensus 68 ~~~l~~-----~~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp---dg~--~v~i~~~~~- 129 (254)
.+.+.. ++.++..+ ...+|.+|+.++.... ..+.++ +|. .+.+..+.+
T Consensus 242 ~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~--------------~~i~i~~~~~g~~~~~~itr~~fe 307 (675)
T 3d2f_A 242 TEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTN--------------APFSVESVMNDVDVSSQLSREELE 307 (675)
T ss_dssp HHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSE--------------EEEEETTSSSSCCEEEEEEHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCc--------------eEEEEeeeccCceEEEEEeHHHHH
Confidence 998853 12221111 2456666766543210 222222 222 334444332
Q ss_pred cccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCC
Q 025352 130 TVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYM 209 (254)
Q Consensus 130 ~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~ 209 (254)
.+.+.++ ..+.+.|.+++...... ..-...|+|+||+|++|++.++|++.+. ..+....+
T Consensus 308 ~l~~~l~---------~~i~~~i~~~L~~a~l~--~~~I~~VvLvGGssriP~v~~~l~~~fg-------~~~~~~~n-- 367 (675)
T 3d2f_A 308 ELVKPLL---------ERVTEPVTKALAQAKLS--AEEVDFVEIIGGTTRIPTLKQSISEAFG-------KPLSTTLN-- 367 (675)
T ss_dssp HHTHHHH---------TTTTHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHHT-------SCEECCSC--
T ss_pred HHHHHHH---------HHHHHHHHHHHHHhCCC--hhhCcEEEEECCCccChHHHHHHHHhcC-------CCccccCC--
Confidence 2222233 35667777777765321 1224789999999999999999998872 12344555
Q ss_pred CcCCCcceeeehhhhhhcc
Q 025352 210 PENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 210 ~~~~~~~~~w~G~si~a~l 228 (254)
|..+++.||+++|..
T Consensus 368 ----PdeaVA~GAa~~a~~ 382 (675)
T 3d2f_A 368 ----QDEAIAKGAAFICAI 382 (675)
T ss_dssp ----TTTHHHHHHHHHHHH
T ss_pred ----cchHHHHHHHHHHHH
Confidence 889999999999864
No 19
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.26 E-value=6.6e-12 Score=111.82 Aligned_cols=199 Identities=15% Similarity=0.191 Sum_probs=119.1
Q ss_pred cccCCCeEEeechhhhhhhccCCc--------eEEEEEcCCCceeEEEe--ecceee-ccccEEeecCHHHHHHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGRI--------SGCTVDIGHGKIDIAPV--IEGAVQ-HIASRRFEVGGMDLTKLLAQEL 71 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~~--------tglVVDiG~~~t~v~pv--~dG~~~-~~~~~~~~~gG~~i~~~l~~~l 71 (254)
+..|+..+.++.+|.||+++++.. +.+|+|+|+++|+++.+ .+|..- .......++||+++++.+.+.+
T Consensus 174 ~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l 253 (409)
T 4gni_A 174 AAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHF 253 (409)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHH
T ss_pred HHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 346788899999999999998754 58999999999999886 333221 1112246899999999999888
Q ss_pred hcc-----C--CCccccH-------HHHHHHHHhccccccchHHHHhhcCCCCceeEEC---CCCc--EEEecchhhccc
Q 025352 72 GKT-----N--PSVNLSL-------YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL---PDGQ--VIRIGKERYTVG 132 (254)
Q Consensus 72 ~~~-----~--~~~~~~~-------~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l---pdg~--~v~i~~~~~~~~ 132 (254)
... + .+...+. ..+|.+|+.++.-. ...+.+ .++. .+.++.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~--------------~~~i~i~~~~~~~~~~~~itr~~~--- 316 (409)
T 4gni_A 254 SKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRST--------------NASFSVESLIDGLDFASTINRLRY--- 316 (409)
T ss_dssp HHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSS--------------EEEEEEEEEETTEEEEEEEEHHHH---
T ss_pred HHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCC--------------ceEEEeecccCCcceEEEeeHHHH---
Confidence 542 1 1111111 13445555432110 011111 1232 233333222
Q ss_pred ccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcC
Q 025352 133 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 133 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~ 212 (254)
|.+++|.+ ..+.++|.+.+.+... ...-.+.|+|+||+|++|++.+++++.+. .+++|..+.......
T Consensus 317 ~~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~V~LvGG~s~~p~v~~~l~~~f~-----~~~~v~~P~~~~~~~ 384 (409)
T 4gni_A 317 ETIARTVF-----EGFNRLVESAVKKAGL--DPLDVDEVIMSGGTSNTPRIAANFRYIFP-----ESTRILAPSTDPSAL 384 (409)
T ss_dssp HHHTHHHH-----HHHHHHHHHHHHHTTC--CGGGCCEEEEESGGGGCHHHHHHHHHHSC-----TTSEEESTTTCTTCC
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHcCC--CHHHCCEEEEECCccccHHHHHHHHHHcC-----CccccccccccCCCc
Confidence 22233321 2466777777776532 22345789999999999999999998871 123453221100011
Q ss_pred CCcceeeehhhhhhccCC
Q 025352 213 LTLYSAWIGGAILAKVVF 230 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l~~ 230 (254)
.|..++-.||+++|....
T Consensus 385 ~p~~ava~GAa~~~~~~~ 402 (409)
T 4gni_A 385 NPSELQARGAALQASLIQ 402 (409)
T ss_dssp CTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhh
Confidence 188999999999998754
No 20
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.12 E-value=1.3e-11 Score=108.07 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=103.7
Q ss_pred cCCCeEEeechhhhhhhccC-----------CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhc
Q 025352 5 FNISGFYSSEQAVLSLYAVG-----------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 73 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g-----------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~ 73 (254)
+.+..+.++++|++|+++.+ ..+.+|||+|+++|+++.+.+|.+....+..+++||..+++.+.+.+.+
T Consensus 152 i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~ 231 (355)
T 3js6_A 152 INVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSK 231 (355)
T ss_dssp EEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC-
T ss_pred EEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHH
Confidence 44678999999999999874 3567999999999999999999998877778999999999999999987
Q ss_pred cCCCccccHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHH
Q 025352 74 TNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLV 153 (254)
Q Consensus 74 ~~~~~~~~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~ 153 (254)
+.....++.. .++....|. .+....++.+++.+....+.+. +.+.|.
T Consensus 232 ~~~g~~l~~~---~i~~g~~~~-----------------~~~~~~~k~~di~~~i~~a~~~-------------~~~~I~ 278 (355)
T 3js6_A 232 KSEGASITPR---MIEKGLEYK-----------------QCKLNQKTVIDFKDEFYKEQDS-------------LIEEVM 278 (355)
T ss_dssp -------CHH---HHHSCCC------------------------------CHHHHHHHHHH-------------HHHHHH
T ss_pred hcCCCcCCHH---HHhcCCccc-----------------cccccccccccHHHHHHHHHHH-------------HHHHHH
Confidence 5222122222 222211110 0001111223332221111111 223333
Q ss_pred HHHhccCHHHHHHhHcCeEeccCccCccc--hHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 154 HTISTVSSENHRQLLENTVLCGGTTSMTG--FEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 154 ~~i~~~~~d~~~~l~~nIvl~GG~s~i~G--~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
+.+++.=.+ .+...+|+|+||+|.+++ +.+.+++++ |. . ++ |.++.-.|.-+++..
T Consensus 279 ~~i~~~l~~--~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~---~~------~--~~------p~~anA~G~~~~~~~ 336 (355)
T 3js6_A 279 SNFEITVGN--INSIDRIIVTGGGANIHFDSLSHYYSDVF---EK------A--DD------SQFSNVRGYEKLGEL 336 (355)
T ss_dssp HHHHHHTCC--TTSCSEEEEESTTHHHHHHHHHHHSSSCE---EC------C--SS------GGGHHHHHHHHHHHH
T ss_pred HHHHHHhhc--hhhccEEEEECcchhcchhhHHHHHHHHC---CC------C--CC------cHHHHHHHHHHHHHH
Confidence 333221001 133478999999999998 777777654 11 1 45 899999998888764
No 21
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.06 E-value=2.8e-10 Score=98.11 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=109.0
Q ss_pred ccCCCeEEeechhhhhhhccC-----CceEEEEEcCCCceeEEEeeccee-eccccEEeecCHHHHHHHHHHHHhccCCC
Q 025352 4 TFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAV-QHIASRRFEVGGMDLTKLLAQELGKTNPS 77 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~-~~~~~~~~~~gG~~i~~~l~~~l~~~~~~ 77 (254)
.+++..+.++++|++|+++.+ ..+.+|||+|+++|+++.+.+|.+ +.......++||+++++.+.+.+.++ .
T Consensus 137 ~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~--~ 214 (320)
T 2zgy_A 137 TFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLA--R 214 (320)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCC--S
T ss_pred EEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHc--C
Confidence 456778999999999998753 357899999999999999999876 44334567999999999999999765 3
Q ss_pred ccccHHHHHHH-HHhccccccchHHHHhhcCCCCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352 78 VNLSLYDVEKL-KEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI 156 (254)
Q Consensus 78 ~~~~~~~~e~i-K~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i 156 (254)
..++...++++ |.+..... ..+ . ..+|. ......+. +.+. ...+.+.|.+.+
T Consensus 215 ~~i~~~~ae~~lk~~~~~~~--~~~--~---------i~~~~--------~~~~~~~~-i~~~-----~~~~~~~i~~~i 267 (320)
T 2zgy_A 215 TKGSSYLADDIIIHRKDNNY--LKQ--R---------INDEN--------KISIVTEA-MNEA-----LRKLEQRVLNTL 267 (320)
T ss_dssp BGGGHHHHHHHHHTTTCHHH--HHH--H---------SSSSC--------THHHHHHH-HHHH-----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhhc--ccc--e---------ecCch--------hhHHHHHH-HHHH-----HHHHHHHHHHHH
Confidence 34566677777 55410000 000 0 00110 00000000 0000 012333444444
Q ss_pred hccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
++. .-...|+|+||+|.+ +.+.+++.+... .-++...++ |.++.-+|+.++++
T Consensus 268 ~~~------~~~~~vvl~GGga~l--l~~~l~~~~~~~----~~~~~~~~~------P~~a~A~G~~~~~~ 320 (320)
T 2zgy_A 268 NEF------SGYTHVMVIGGGAEL--ICDAVKKHTQIR----DERFFKTNN------SQYDLVNGMYLIGN 320 (320)
T ss_dssp TTC------CCCCEEEEESTTHHH--HHHHHHHTSCCC----GGGEECCSC------GGGHHHHHHHHHHC
T ss_pred Hhh------cCCCeEEEECChHHH--HHHHHHHHhCCC----CCceeeCCC------cHHHHHHHHHHhcC
Confidence 332 123679999999998 666666554110 013455566 89999999988764
No 22
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.03 E-value=1.3e-10 Score=100.69 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=107.3
Q ss_pred cCCCeEEeechhhhhhhccC----CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccc
Q 025352 5 FNISGFYSSEQAVLSLYAVG----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNL 80 (254)
Q Consensus 5 ~~~~~v~~~~~~~~a~~~~g----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~ 80 (254)
+.+..+.+.|+++.+++... ..+.+|||+|+++|+++.+.+|.+.......+++||+++++.+.+.++...+...+
T Consensus 147 i~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i 226 (329)
T 4apw_A 147 FEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTDLNNGNLI 226 (329)
T ss_dssp EEEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSSCSSCSCT
T ss_pred EEEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHhhccCCCC
Confidence 44678999999999998762 36779999999999999999999987766778999999999999988751222223
Q ss_pred cHHHHHHHHHhccccccchHHHHhhcCCCCceeEECCCCcEEEe-cchhhcccccccCcccCCCCCCCHHHHHHHHHhc-
Q 025352 81 SLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRI-GKERYTVGEALFQPSILGLEAHGIVEQLVHTIST- 158 (254)
Q Consensus 81 ~~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpdg~~v~i-~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~- 158 (254)
+...++++|+. +..... -.++ .+ ..+...+- ..+.+.|.+.+++
T Consensus 227 ~~~~~e~i~~~-g~~~~g---------------~~~~-----~~~~~~i~~~~-------------~e~~~~I~~~i~~~ 272 (329)
T 4apw_A 227 TNEQAESALNN-GYMKKG---------------GEID-----TESSTVIKKVK-------------EKFLKDAIKLIEKR 272 (329)
T ss_dssp TSBTTTTCSSS-CSSCEE---------------CTTC-----CSTTHHHHHHH-------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhc-CCcccC---------------Ccch-----hHHHHHHHHHH-------------HHHHHHHHHHHHHc
Confidence 33344444432 111000 0000 00 00000000 1123333333332
Q ss_pred -cCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 159 -VSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 159 -~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
.+++ +...|+|+||+|.+ +.+.+++++ +.++...++ |.++.-.|.-.++..
T Consensus 273 ~~~~~----~~~~IvltGGGA~l--~~~~l~~~~-------~~~v~v~~~------P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 273 GFKLD----QLDSLIFIGGTTQK--LKEQISKTY-------PNNSIITNN------SQWTTCEGLYKVAVA 324 (329)
T ss_dssp TCCTT----SCSEEEEESTTHHH--HHHHHHHHS-------TTCEECCSS------GGGHHHHHHHHHHHH
T ss_pred CCCHH----HccEEEEECChHHH--HHHHHHHHc-------CCCCEecCC------ChhhHHHHHHHHHhh
Confidence 3333 35789999999999 447777664 223445566 889999998877653
No 23
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=98.96 E-value=1.8e-09 Score=100.79 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=112.8
Q ss_pred cccCCCeEEeechhhhhhhccCC------ceEEEEEcCCCceeEEEeecce----e---eccccEEeecCHHHHHHHHHH
Q 025352 3 ETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVIEGA----V---QHIASRRFEVGGMDLTKLLAQ 69 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~dG~----~---~~~~~~~~~~gG~~i~~~l~~ 69 (254)
+..|++.+.++++|.||++++|. .+-+|+|+|+++++++.+.-+. . +.......++||+++++.+.+
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~ 238 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLIN 238 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHH
Confidence 34678889999999999988853 4679999999999999885433 1 111122357899999999998
Q ss_pred HHhcc-----CCCcccc-------HHHHHHHHHhccccccchHHHHhhcCCCCceeEECCC--C-c--EEEecchhhccc
Q 025352 70 ELGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD--G-Q--VIRIGKERYTVG 132 (254)
Q Consensus 70 ~l~~~-----~~~~~~~-------~~~~e~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lpd--g-~--~v~i~~~~~~~~ 132 (254)
.+... +.+...+ ...+|.+|+.++...... ....+...+ | . .+.+..+.+
T Consensus 239 ~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~----------i~~~~~~~~~~g~~~~~~~itr~~~--- 305 (605)
T 4b9q_A 239 YLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTD----------VNLPYITADATGPKHMNIKVTRAKL--- 305 (605)
T ss_dssp HHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEE----------EEEEEEEECSSSEEEEEEEEEHHHH---
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeE----------EEEeeeccCCCCCeeEEEEEeHHHH---
Confidence 87531 2221111 234555555543221100 001111111 1 1 233332221
Q ss_pred ccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcC
Q 025352 133 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPEN 212 (254)
Q Consensus 133 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~ 212 (254)
|-++.|-+ ..+.+.+.+++...... ..-...|+|+||+|++|++.+++++.+.. .+....+
T Consensus 306 e~l~~~~~-----~~i~~~v~~~L~~a~~~--~~~i~~VvLvGG~sriP~v~~~l~~~fg~-------~~~~~~n----- 366 (605)
T 4b9q_A 306 ESLVEDLV-----NRSIEPLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFGK-------EPRKDVN----- 366 (605)
T ss_dssp HHHHHHHH-----HHTTHHHHHHHHHTTCC--GGGCSEEEEESGGGGSHHHHHHHHHHHTS-------CCCSSSC-----
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHcCCC--HHHCcEEEEeCCccCchHHHHHHHHHhcc-------CcCCCcC-----
Confidence 12222210 13445556666554221 12246899999999999999999988721 1223334
Q ss_pred CCcceeeehhhhhhcc
Q 025352 213 LTLYSAWIGGAILAKV 228 (254)
Q Consensus 213 ~~~~~~w~G~si~a~l 228 (254)
|..++-.||+++|..
T Consensus 367 -PdeaVA~GAai~a~~ 381 (605)
T 4b9q_A 367 -PDEAVAIGAAVQGGV 381 (605)
T ss_dssp -TTTHHHHHHHHHHHH
T ss_pred -hhHHHHHhHHHHHHH
Confidence 778889999998864
No 24
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.93 E-value=3.5e-10 Score=98.63 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=55.9
Q ss_pred CCCeEEeechhhhhhhcc--C----C--ceEEEEEcCCCceeEEEee--cceeeccccEEeecCHHHHHHHHHHHHhc
Q 025352 6 NISGFYSSEQAVLSLYAV--G----R--ISGCTVDIGHGKIDIAPVI--EGAVQHIASRRFEVGGMDLTKLLAQELGK 73 (254)
Q Consensus 6 ~~~~v~~~~~~~~a~~~~--g----~--~tglVVDiG~~~t~v~pv~--dG~~~~~~~~~~~~gG~~i~~~l~~~l~~ 73 (254)
++..+.++++|.+|++++ + . .+.+|||+|+++|+++.+. +|.++......+++||+++++.+.+.++.
T Consensus 162 ~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~ 239 (346)
T 2fsj_A 162 NITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAK 239 (346)
T ss_dssp EEEEEEEEETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHH
Confidence 457799999999999974 2 1 3459999999999999998 78766655677899999999999887754
No 25
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.85 E-value=2.6e-09 Score=96.38 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=59.3
Q ss_pred chhhhhhhcc----C-CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccHHHHHHH
Q 025352 14 EQAVLSLYAV----G-RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKL 88 (254)
Q Consensus 14 ~~~~~a~~~~----g-~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~i 88 (254)
-+|+||.++. + ....++||||+++|+++.+.+|..+.. ..++.||+++|..+..-|.- -+.+.+|++
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~VT~DIA~~Lg~------~d~~~AErI 463 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNMVSLLIKTELGL------EDLSLAEAI 463 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHHHHHHHHHHHTC------SCHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHh
Confidence 4566666554 2 357799999999999999999999875 45899999999999999952 138999999
Q ss_pred HHhcccc
Q 025352 89 KEQFSCC 95 (254)
Q Consensus 89 K~~~~~v 95 (254)
|. ++..
T Consensus 464 K~-YG~A 469 (607)
T 1nbw_A 464 KK-YPLA 469 (607)
T ss_dssp HH-SCEE
T ss_pred cc-cCce
Confidence 99 7664
No 26
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.84 E-value=8.5e-09 Score=92.87 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=59.5
Q ss_pred chhhhhhhcc----C-CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCccccHHHHHHH
Q 025352 14 EQAVLSLYAV----G-RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKL 88 (254)
Q Consensus 14 ~~~~~a~~~~----g-~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~~~~~~~~e~i 88 (254)
-+|+||.++. + ....++||||+++|+++.+.+|..+.. ..++.||+++|..+..-|.- -+.+.+|++
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DIA~~Lgt------~d~~~AErI 461 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMIIARELGL------EDRYLAEEI 461 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHHHHHHTC------CCHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHHhCC------CCHHHHHHh
Confidence 4566666654 2 357799999999999999999999875 45899999999999999952 138999999
Q ss_pred HHhcccc
Q 025352 89 KEQFSCC 95 (254)
Q Consensus 89 K~~~~~v 95 (254)
|. ++..
T Consensus 462 K~-YG~A 467 (610)
T 2d0o_A 462 KK-YPLA 467 (610)
T ss_dssp HH-SCEE
T ss_pred cc-cCce
Confidence 99 7664
No 27
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.27 E-value=0.00079 Score=56.12 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHhHcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 165 RQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 165 ~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
....+.|+++||.|..|+++++|++.+ ..+++.+++ |.+..-+||+++|.
T Consensus 204 ~~~~~~vvl~GGva~n~~lr~~l~~~~-------g~~~~~p~~------p~~~~A~GAAl~A~ 253 (276)
T 4ehu_A 204 IGVQRNVVMVGGVARNSGIVRAMAREI-------NTEIIVPDI------PQLTGALGAALYAF 253 (276)
T ss_dssp HCCCSSEEEESGGGGCHHHHHHHHHHH-------TSCEECCSS------GGGHHHHHHHHHHH
T ss_pred cccCCeEEEecCccchHHHHHHHHHHH-------CCCeeeCCC------cchHHHHHHHHHHH
Confidence 344578999999999999999999887 235666777 88888899999984
No 28
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=95.90 E-value=0.0041 Score=51.84 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=37.9
Q ss_pred cCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
..|+++||.++-+++.+++.+.|.. +|..++. +++..-+|++++|..
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~-------~v~~p~~------~~~~~AlGAAl~A~~ 256 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGV-------EIKTSPL------AQYNGALGAALYAYK 256 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCS-------CEECCGG------GGGHHHHHHHHHHHH
T ss_pred CeEEEeCccccCHHHHHHHHHHHCC-------CeEeCCC------cchHhHHHHHHHHHH
Confidence 5799999999999999999988822 3555555 677788999999854
No 29
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=95.34 E-value=0.028 Score=47.15 Aligned_cols=50 Identities=20% Similarity=0.097 Sum_probs=40.4
Q ss_pred HcCeEeccC-ccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 168 LENTVLCGG-TTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 168 ~~nIvl~GG-~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.++|+++|| .+..|++.++|.+.+.+. ..+++.+++ +++..-+||+++++
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~----~~~~~~p~~------~~~~gAlGAaL~~~ 287 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLR----GCKPYYVEN------GAFSGAIGALYLEK 287 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHT----TCEEEECTT------GGGHHHHHHHHTCC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhC----CceEEECCC------ccHHHHHHHHHhCC
Confidence 347999999 999999999999876432 346777777 89999999998763
No 30
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=94.79 E-value=0.19 Score=43.43 Aligned_cols=72 Identities=7% Similarity=0.043 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhccCH-HHHHHhHcCeEeccC-ccCccchHHHHHHhhh-cCCCccceEEeCCCCCCCcCCCcceeeehhh
Q 025352 147 GIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEAG-LCSSAIRPTLVKPPEYMPENLTLYSAWIGGA 223 (254)
Q Consensus 147 ~l~~~i~~~i~~~~~-d~~~~l~~nIvl~GG-~s~i~G~~erl~~eL~-~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~s 223 (254)
+|..+|.+.|.++.. -.++.=.++|+++|| .+..|++.+.|.+.|. .... .+++.-+++ ++|..-+||.
T Consensus 284 gll~sVa~~I~~lA~l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~------~~y~GAlGAa 355 (360)
T 2i7n_A 284 ATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEH------EGYFGAVGAL 355 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETT------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCC------ccHHHHHHHH
Confidence 455555555544321 113334458999999 9999999999999983 2222 234554556 7899999998
Q ss_pred hhh
Q 025352 224 ILA 226 (254)
Q Consensus 224 i~a 226 (254)
+++
T Consensus 356 L~~ 358 (360)
T 2i7n_A 356 LEL 358 (360)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 31
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=93.47 E-value=0.054 Score=46.19 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCceeEEEeecceeecc
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
.++++||||+.+|+++|+.+|+++..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 57999999999999999999999763
No 32
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=92.15 E-value=0.37 Score=39.97 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=37.6
Q ss_pred cccCCCeEEeechhhhhhhcc-----CCceEEEEEcCCCceeEEEeecceeecc
Q 025352 3 ETFNISGFYSSEQAVLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 3 e~~~~~~v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
+.|++| +++.+..-+++++. +..+.++|-+|.+ .-..-|.||++...
T Consensus 92 ~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 92 SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 667887 88889988888773 5679999999987 56777789988764
No 33
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=91.56 E-value=0.31 Score=41.29 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
..+++|||+|.++|.++-+.+|.+.. ...+|+|+-.+++.+.
T Consensus 137 ~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G~v~l~e~~~ 178 (315)
T 1t6c_A 137 EGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIGIVNLTETFF 178 (315)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEEE--EEEECCCHHHHHHHHC
T ss_pred CCCEEEEEeCCCcEEEEEEeCCceee--EEEEeccHHHHHHHhc
Confidence 56799999999999999998888765 4668999999998764
No 34
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=90.16 E-value=0.85 Score=38.42 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=35.4
Q ss_pred cc-CCCeEEeechhhhhhhcc-------CCceEEEEEcCCCceeEEEeecceeecc
Q 025352 4 TF-NISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 51 (254)
Q Consensus 4 ~~-~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 51 (254)
.+ ++| +++.+..-+++++- +..+.++|-+|.+ .-..-|.||++...
T Consensus 116 ~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~G 169 (321)
T 3r8e_A 116 EFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFIG 169 (321)
T ss_dssp HCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCC
T ss_pred HcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEecC
Confidence 35 666 78888888886642 4678999999988 77778889998764
No 35
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=89.56 E-value=0.45 Score=40.28 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
..+++|+|+|.++|.++-+.++.+.. ...+|+|.-.+++.+.
T Consensus 130 ~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f~ 171 (315)
T 3mdq_A 130 DHISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQRLIDRFH 171 (315)
T ss_dssp TCCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHHHHHHSC
T ss_pred CCCEEEEEeCCCceEEEEEECCeEee--eEEEechhhHHHHHhc
Confidence 36799999999999999999988765 3568999988887653
No 36
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=88.52 E-value=0.47 Score=40.71 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCceeEEEeec--ceee--ccccEEeecCHHHHHHHHH
Q 025352 26 ISGCTVDIGHGKIDIAPVIE--GAVQ--HIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~d--G~~~--~~~~~~~~~gG~~i~~~l~ 68 (254)
.+++|+|+|+++|.++-+.+ +.+. ......+|+|+..+++.+.
T Consensus 146 ~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~SlplG~v~lt~~~~ 192 (343)
T 3cer_A 146 APYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMNIGSVRMTERHL 192 (343)
T ss_dssp SSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEESCCHHHHHHHTC
T ss_pred CCEEEEEeCCCceEEEEeecCccCcccccceeEEEehhHHHHHHHhc
Confidence 56999999999999998877 3321 1135678999999998763
No 37
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=84.66 E-value=1.6 Score=39.51 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=34.0
Q ss_pred eEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHH
Q 025352 27 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLA 68 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~ 68 (254)
.++|||||+++|.++-..++.+.. ...+|+|.-.+++.+.
T Consensus 138 ~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrlte~f~ 177 (513)
T 1u6z_A 138 RKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLYF 177 (513)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHHHHHHHS
T ss_pred CEEEEEECCCcEEEEEEeCCeeeE--EEEEeccHHHHHHHHc
Confidence 799999999999999998888764 4568999998887653
No 38
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=84.48 E-value=1.7 Score=39.33 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=33.8
Q ss_pred CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHH
Q 025352 25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKL 66 (254)
Q Consensus 25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~ 66 (254)
...++|||+|+++|.++-+.+|.+.. ...+|+|.-.+++.
T Consensus 139 ~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 139 QPDGIAGDLGGGSLELIDIKDKSCGE--GITLPLGGLRLSEQ 178 (508)
T ss_dssp SCEEEEEEECSSCEEEEEEETTEECC--CEEESCCHHHHHHH
T ss_pred CCCeEEEEeCCCceEEEEeeCCeeee--EEEecceEEehhhc
Confidence 35789999999999999999998765 46689999888864
No 39
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=74.47 E-value=2 Score=36.25 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=34.2
Q ss_pred CeEeccCccCccchHHHHHHhh-hcC-CCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLC-SSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~-~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|+|.||.+..+-|.+++++.+ +.. +...+++|..+.- ...+.-+||+.++
T Consensus 272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~l------g~~a~~~GAa~l~ 324 (327)
T 4db3_A 272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKH------GDSGGVRGAAFLN 324 (327)
T ss_dssp EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSC------GGGHHHHHHHHTT
T ss_pred EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCC------CCcHHHHHHHHHH
Confidence 4778888888888888888888 433 2223455655544 4566778888765
No 40
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=71.61 E-value=3 Score=35.81 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCceeEEEeec--ceeeccccEEeecCHH
Q 025352 26 ISGCTVDIGHGKIDIAPVIE--GAVQHIASRRFEVGGM 61 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~d--G~~~~~~~~~~~~gG~ 61 (254)
.+.+|+|+|.++|.++-..+ +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 47999999999999987744 3333333456777764
No 41
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=68.43 E-value=3.9 Score=33.84 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=34.6
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|||.||.+..+.|.+++++.+ ..... .++|..+.. ...+.-+||..++.
T Consensus 240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~l------g~~a~~~GAa~l~~ 290 (297)
T 4htl_A 240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATH------KNQAGLLGAVYHFL 290 (297)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSC------TTTHHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCc------CChHHHHhHHHHHH
Confidence 4788888888888999999998 44332 234444443 45677888887764
No 42
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=64.52 E-value=2.5 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=32.8
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|+|.||.+..+-|.+++++.+ +... ..++++..+.. ...++.+||+.++
T Consensus 236 ~ivlgG~~~~~~~~~~~l~~~l~~~~~-~~~~~i~~~~~------~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 236 CVVVGGSVGLAEGYLALVETYLAQEPA-AFHVDLLAAHY------RHDAGLLGAALLA 286 (289)
T ss_dssp EEEEEHHHHTSTTHHHHHHHHHTTSCG-GGCCEEEECSC------SSCHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhcC-ccCCEEEECCC------CCchHHHHHHHHH
Confidence 4788888876788999999888 4321 12445544433 3456778888765
No 43
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=59.81 E-value=3.7 Score=34.15 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=31.6
Q ss_pred CeEeccCcc-Cc-cchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTT-SM-TGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s-~i-~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|+|.||.+ .. +-|.+++++++ +........+|..+.- ...++-+||+.++
T Consensus 240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~l------g~~a~~~GAa~l~ 293 (302)
T 3vov_A 240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARL------GAEAGLLGAALTA 293 (302)
T ss_dssp EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSS------GGGHHHHHHHHHH
T ss_pred EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCC------CCcHHHHHHHHHH
Confidence 367777776 55 55888998888 4433222333444433 4566778888775
No 44
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=58.71 E-value=3.9 Score=34.11 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=32.7
Q ss_pred CeEeccCccC-ccchHHHHHHhh-hcCCCcc--ceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTS-MTGFEDRFQKEA-GLCSSAI--RPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~-i~G~~erl~~eL-~~~~~~~--~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|+|.||.+. .+-|.+++++.+ +..+... +++|..+.. ...+..+||..++-
T Consensus 265 ~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~------~~~a~~~GAa~l~~ 320 (326)
T 2qm1_A 265 SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAEL------GNEAGVIGAASLAL 320 (326)
T ss_dssp EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSS------GGGHHHHHHHHHGG
T ss_pred EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCc------CchHHHHHHHHHHH
Confidence 4788888775 567888888888 4433211 345554433 45667788887763
No 45
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=56.04 E-value=6.4 Score=33.81 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=31.8
Q ss_pred CeEeccCccCc-cchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSM-TGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i-~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|||.||.+.. +-|.+++++.+ +.......++|..... ...+..+||+.++
T Consensus 317 ~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~------~~~a~~~GAa~l~ 369 (380)
T 2hoe_A 317 KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKV------QEPVIAFGAAVHA 369 (380)
T ss_dssp EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCC------CSCHHHHHHHHHH
T ss_pred EEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCC------CCcHHHHHHHHHH
Confidence 47888887754 66888888888 4332213345544433 3456778888775
No 46
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=55.82 E-value=7.4 Score=32.34 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=33.3
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCC---------ccceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSS---------AIRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~---------~~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|||.||.+..+.|.+++++.+ +.... ..++.|..+.- ...+..+||+.++
T Consensus 227 ~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~l------g~~a~l~GAa~l~ 287 (302)
T 3epq_A 227 XIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRL------GSNAGIIGTLVLA 287 (302)
T ss_dssp CEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTT------GGGHHHHHHHHHH
T ss_pred hhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCc------CChHHHHHHHHHH
Confidence 4788888887776888888888 33211 12344555544 5667888888776
No 47
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=48.72 E-value=5.4 Score=33.31 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=27.6
Q ss_pred eEEEEEcCCCceeEEEe-ecceeeccccEEee-cCHHHHHHHHHHHH
Q 025352 27 SGCTVDIGHGKIDIAPV-IEGAVQHIASRRFE-VGGMDLTKLLAQEL 71 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv-~dG~~~~~~~~~~~-~gG~~i~~~l~~~l 71 (254)
-.+.||+|...++++.+ .+|.++.......+ .+...+.+.+.+.+
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~~~~~~~~~~~i~~~i 71 (327)
T 2ap1_A 25 MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELV 71 (327)
T ss_dssp EEEEEEECSSEEEEEEEETTCCEEEEEEEECCCSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCEEEEEEEeCCCCEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 46889999999998887 36777654332222 13444444444444
No 48
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=44.35 E-value=10 Score=32.69 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.2
Q ss_pred cCeEeccCccCccchHHHHHHhh
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL 191 (254)
..|+++||++.=|-+.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 46999999999999999999887
No 49
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=42.42 E-value=14 Score=30.85 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=32.8
Q ss_pred CeEeccCccCc-cchHHHHHHhh-hcCC-C--ccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTSM-TGFEDRFQKEA-GLCS-S--AIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~i-~G~~erl~~eL-~~~~-~--~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|||.||.+.. +-|.+++++.+ +... . .-.++|....- ...+.-+||+.++.
T Consensus 255 ~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l------~~~a~l~GAa~l~~ 311 (321)
T 3vgl_A 255 AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQL------GGKAGLVGAADLAR 311 (321)
T ss_dssp EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTT------GGGHHHHHHHHHHH
T ss_pred EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCC------CCcHHHHHHHHHHH
Confidence 47888887765 34578888888 4432 1 12345655554 46677888887764
No 50
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=39.16 E-value=18 Score=30.54 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=26.8
Q ss_pred HcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCC
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPE 207 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~ 207 (254)
.++|+++||.++=..+.++|.+++ .. .++++.+|.
T Consensus 250 ~~~vvlsGGVa~N~~L~~~L~~~l~~~-----g~~v~~p~~ 285 (334)
T 3eno_A 250 KDEILMAGGVALNRRLRDMVTNMAREA-----GIRSYLTDR 285 (334)
T ss_dssp CSEEEEESSGGGCHHHHHHHHHHHHHH-----TSEEECCCT
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEecCC
Confidence 367999999999999999999988 22 235665553
No 51
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=38.09 E-value=15 Score=31.67 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.1
Q ss_pred cCeEeccCccCccchHHHHHHhh
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL 191 (254)
..|+++||++.=|-+.+||++.|
T Consensus 291 ~~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 291 GELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp EEEEEESGGGGCHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHhC
Confidence 36999999999999999999887
No 52
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=37.91 E-value=27 Score=30.94 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCceeEEEeecce
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~ 47 (254)
.+..|+|+|.++|.++-.-+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4678999999999999886654
No 53
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=34.92 E-value=18 Score=31.06 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=33.8
Q ss_pred cCeEeccCccCccc-hHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 169 ENTVLCGGTTSMTG-FEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 169 ~nIvl~GG~s~i~G-~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
..|||+||.+...- |.+++++.+ ... ++.|..... ...+.-+||..++.-
T Consensus 297 ~~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~------~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 297 DFIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSN------EEKALALSALRVLRG 348 (381)
T ss_dssp SEEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCC------HHHHHHHHHHHHHTT
T ss_pred CEEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCc------chhHHHHHHHHHHcC
Confidence 35899999887655 889999888 443 345554333 334677888877643
No 54
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=34.77 E-value=21 Score=29.93 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.5
Q ss_pred HcCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCC
Q 025352 168 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPP 206 (254)
Q Consensus 168 ~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~ 206 (254)
.++|+++||.++=..+.++|.+.++.. .++++.+|
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~----g~~v~~p~ 279 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDR----GIKFFVPP 279 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHH----TCEEECCC
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHc----CCEEEecC
Confidence 458999999999999999999888211 23566555
No 55
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=33.96 E-value=22 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCceeEEEe-ecceeeccc
Q 025352 26 ISGCTVDIGHGKIDIAPV-IEGAVQHIA 52 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv-~dG~~~~~~ 52 (254)
...+.||+|...+.++.+ .+|.++...
T Consensus 30 ~~~lgiDiGgt~i~~~l~d~~G~il~~~ 57 (343)
T 2yhw_A 30 LSALAVDLGGTNLRVAIVSMKGEIVKKY 57 (343)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCcEEEEE
Confidence 346889999999998887 468777553
No 56
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=33.01 E-value=20 Score=31.78 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=37.0
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCC------ccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSS------AIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~------~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
.|.+-||....|+|.+++++.+ .+.+. ..+|.+.... .++=+||+++|.+
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~---------dgsg~GAAl~aa~ 442 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAI---------DGXGAASXVIXSI 442 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECC---------CTTTHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECC---------CchhhhHHHHHHH
Confidence 3667788888999999999999 66532 3356666543 4578899998876
No 57
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=32.69 E-value=24 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=18.9
Q ss_pred eEEEEEcCCCceeEEEee-cceeecc
Q 025352 27 SGCTVDIGHGKIDIAPVI-EGAVQHI 51 (254)
Q Consensus 27 tglVVDiG~~~t~v~pv~-dG~~~~~ 51 (254)
..+.||+|...+.++.+- +|.++..
T Consensus 7 ~~lgiDiGgt~~~~~l~d~~g~i~~~ 32 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGKILAE 32 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSCEEEE
T ss_pred EEEEEEcCccceEEEEEeCCCCEEEE
Confidence 457889999999888873 6776654
No 58
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=31.39 E-value=30 Score=28.16 Aligned_cols=44 Identities=23% Similarity=0.052 Sum_probs=27.4
Q ss_pred CeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhc
Q 025352 170 NTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 227 (254)
Q Consensus 170 nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~ 227 (254)
.|+|.||.+..+-|.+++++.+ +. ++.... . ..++-+||..++.
T Consensus 242 ~IvlgGgv~~~~~~~~~l~~~~~~~-----~i~~~~-~--------~~~~~~GAa~la~ 286 (299)
T 2e2o_A 242 KVYLKGGMFRSNIYHKFFTLYLEKE-----GIISDL-G--------KRSPEIGAVILAY 286 (299)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHHHT-----TCEEEC-C--------SCCHHHHHHHHHH
T ss_pred EEEEECCccCcHHHHHHHHHHCCCC-----eEeccC-C--------CCChHHHHHHHHH
Confidence 4788888766566777777766 32 344433 2 2456778887763
No 59
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=30.93 E-value=16 Score=31.04 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=27.2
Q ss_pred CeEeccC-ccCccchHH--HHHHhh-h-cCCCc-------cceEEeCCCCCCCcCCCcceeeehhhhhh
Q 025352 170 NTVLCGG-TTSMTGFED--RFQKEA-G-LCSSA-------IRPTLVKPPEYMPENLTLYSAWIGGAILA 226 (254)
Q Consensus 170 nIvl~GG-~s~i~G~~e--rl~~eL-~-~~~~~-------~~v~v~~~~~~~~~~~~~~~~w~G~si~a 226 (254)
.|+|.|| .+..+-|.+ .+++++ + ..+.. .++.|..... ...+..+||..++
T Consensus 307 ~IvlgGG~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~------~~~a~l~GAa~l~ 369 (373)
T 2q2r_A 307 TIVLVGDNIVNNAFFYRNPQNLKEMHHEALNHEMERFGFQSRVSYLRQKK------LLNLNLMGCYRCG 369 (373)
T ss_dssp EEEECSHHHHHTHHHHHSHHHHHHHHHHHTCSGGGGGTSGGGCEEEEECS------CCCHHHHHHHHHH
T ss_pred EEEEeCChHhCchhhhcchhHHHHHHHHHhhcccchhhhhcCCcEEEEec------CCchhHHHHHHHH
Confidence 3677677 666566666 666666 2 22211 1344433222 2456778887765
No 60
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=30.23 E-value=28 Score=28.83 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=33.7
Q ss_pred eEeccCccCccc-hHHHHHHhh-hcC--C-CccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCC
Q 025352 171 TVLCGGTTSMTG-FEDRFQKEA-GLC--S-SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ 232 (254)
Q Consensus 171 Ivl~GG~s~i~G-~~erl~~eL-~~~--~-~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~ 232 (254)
|||.||.+..+. +.+++.+.+ +.. + ...+++|..+.- ...+.-+||+.++--..|.
T Consensus 243 IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~l------g~~ag~~GAa~la~~~~~~ 303 (310)
T 3htv_A 243 VILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASS------SDFNGAQGAAILAHQRFLP 303 (310)
T ss_dssp EEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCC------CTTHHHHHHHHHHHHHHCC
T ss_pred EEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCC------CCcHHHHHHHHHHHHHhhc
Confidence 677777777654 466777776 322 1 112456655443 4577889998887544443
No 61
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=30.00 E-value=39 Score=29.90 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCceeEEEeecce
Q 025352 26 ISGCTVDIGHGKIDIAPVIEGA 47 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv~dG~ 47 (254)
.+..++|+|.++|+|+=..++.
T Consensus 181 ~t~g~lDlGGgStQi~f~~~~~ 202 (452)
T 3zx3_A 181 STFGALDLGGASTQITFVPLNS 202 (452)
T ss_dssp CCCEEEEECSSEEEEEECCSSC
T ss_pred CceEEEecCCCceEEEeccCCC
Confidence 5677889999999998765553
No 62
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=29.30 E-value=53 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred cCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCC
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPE 207 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~ 207 (254)
++|+|+||.+.=..+.++|.+.++ .++++.++.
T Consensus 601 ~~VvLsGGV~~N~~Lre~L~~~l~------g~~v~~p~~ 633 (657)
T 3ttc_A 601 TTLVFSGGVIHNRLLRARLAHYLA------DFTLLFPQS 633 (657)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHTT------TSEEECCCS
T ss_pred CEEEEECcHHHHHHHHHHHHHHhC------CCEEEecCC
Confidence 479999999999999999998873 345655543
No 63
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=28.13 E-value=74 Score=26.02 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=35.0
Q ss_pred ccCCCeEEeechhhhhhhcc-------CCceEEEEEcCCCceeEEEeecceeec
Q 025352 4 TFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQH 50 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~ 50 (254)
.+++| +++.+..-+++++- +..+.++|-+|.+ .-..-+.||.+..
T Consensus 107 ~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~ 158 (326)
T 2qm1_A 107 ALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH 158 (326)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence 35667 78888888887652 4578999999998 6677788998876
No 64
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=27.81 E-value=1.1e+02 Score=24.75 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=32.4
Q ss_pred EEEEEcCCCceeEEEeecceeeccccEEe-ecCHHHHHHHHHHHHhccCC
Q 025352 28 GCTVDIGHGKIDIAPVIEGAVQHIASRRF-EVGGMDLTKLLAQELGKTNP 76 (254)
Q Consensus 28 glVVDiG~~~t~v~pv~dG~~~~~~~~~~-~~gG~~i~~~l~~~l~~~~~ 76 (254)
-|+||+|.+.+....+-++..+....... ....+.+...+..++...+.
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~~ 53 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNC 53 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 48999999988888887776654422111 23456666777777766553
No 65
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.10 E-value=34 Score=29.71 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCceeEEEe-ecceeeccc
Q 025352 26 ISGCTVDIGHGKIDIAPV-IEGAVQHIA 52 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv-~dG~~~~~~ 52 (254)
...+.||+|...+.++.+ .+|.++...
T Consensus 108 ~~~lGIDiGgt~i~~~l~d~~G~il~~~ 135 (429)
T 1z05_A 108 WQFLSMRLGRGYLTIALHELGGEVLIDT 135 (429)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEE
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEE
Confidence 356889999999998887 467777653
No 66
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=23.86 E-value=49 Score=29.19 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=30.3
Q ss_pred cCeEeccCccCccchHHHHHHhhhcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhcc
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 228 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l 228 (254)
+.|.++||+|+=+-+.+.+.+-+. .+|.+ ++. .+.++-+|++++|..
T Consensus 388 ~~i~~~GG~a~s~~~~Qi~Adv~g-----~pV~~--~~~------~e~~~alGAA~lA~~ 434 (484)
T 2itm_A 388 QSVTLIGGGARSEYWRQMLADISG-----QQLDY--RTG------GDVGPALGAARLAQI 434 (484)
T ss_dssp SCEEEESGGGCCHHHHHHHHHHHC-----CCEEE--ESC------TTSCHHHHHHHHHHH
T ss_pred ceEEEEeccccCHHHHHHHHHHhC-----CeEEe--CCC------CCcccHHHHHHHHHH
Confidence 569999999987777666665441 23333 333 334467899888854
No 67
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=23.71 E-value=1e+02 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=34.1
Q ss_pred ccCCCeEEeechhhhhhhcc-------CCceEEEEEcCCCceeEEEeecceeec
Q 025352 4 TFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQH 50 (254)
Q Consensus 4 ~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~ 50 (254)
.+++| +.+.+..-+++++. +. +.++|.+|.+ .-..-|.||++..
T Consensus 95 ~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~ 145 (289)
T 2aa4_A 95 LTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLT 145 (289)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEee
Confidence 35676 78888888887652 34 8999999988 6777788999875
No 68
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=23.47 E-value=24 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCceeEEEe-ecceeeccc
Q 025352 26 ISGCTVDIGHGKIDIAPV-IEGAVQHIA 52 (254)
Q Consensus 26 ~tglVVDiG~~~t~v~pv-~dG~~~~~~ 52 (254)
...+.||+|...+.++.+ .+|.++...
T Consensus 85 ~~~lgiDiG~t~i~~~l~d~~G~il~~~ 112 (406)
T 1z6r_A 85 WHYLSLRISRGEIFLALRDLSSKLVVEE 112 (406)
T ss_dssp CEEEEEEEETTEEEEEEEETTCCEEEEE
T ss_pred cEEEEEEEcCCEEEEEEEcCCCCEEEEE
Confidence 456899999999998887 467777543
No 69
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=23.11 E-value=28 Score=30.77 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=34.1
Q ss_pred eEeccCcc-CccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccC
Q 025352 171 TVLCGGTT-SMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVV 229 (254)
Q Consensus 171 Ivl~GG~s-~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~ 229 (254)
|++.||.. ..|.|.+++++.+ ++.....+|.+.. .+.++.+||+++|...
T Consensus 396 V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l---------~~dgs~iGAAllA~~~ 447 (451)
T 1bdg_A 396 VGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRL---------SEDGSGKGAAAIAASC 447 (451)
T ss_dssp EEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEE---------CTTHHHHHHHHHHTTC
T ss_pred EEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEE---------CCCccHHHHHHHHHHH
Confidence 44446643 6789999999999 5543344555553 3467899999988653
No 70
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=22.71 E-value=17 Score=18.36 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=12.1
Q ss_pred ceeeeHHHHhhcCcc
Q 025352 233 NQHITKADYDESGPS 247 (254)
Q Consensus 233 ~~~it~~ey~e~G~~ 247 (254)
...+|-++|+|+|..
T Consensus 8 Gi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 8 GIKLSGAQYQQHGRA 22 (26)
T ss_dssp TGGGHHHHCSCSSSC
T ss_pred eeEecHHHHHHHhHH
Confidence 466888999999964
No 71
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=21.28 E-value=67 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.3
Q ss_pred cCeEeccCccCccchHHHHHHhh
Q 025352 169 ENTVLCGGTTSMTGFEDRFQKEA 191 (254)
Q Consensus 169 ~nIvl~GG~s~i~G~~erl~~eL 191 (254)
+.|+|+||.+.=..+.++|.+.+
T Consensus 695 ~~VvLsGGVa~N~~Lr~~L~~~l 717 (761)
T 3vth_A 695 NKVVLSGGSFQNRYLLRRLIEKL 717 (761)
T ss_dssp CEEEEESGGGGSHHHHHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHHH
Confidence 57999999999999999999888
No 72
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=20.56 E-value=58 Score=28.78 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=17.1
Q ss_pred CCceEEEEEcCCCceeEEEe
Q 025352 24 GRISGCTVDIGHGKIDIAPV 43 (254)
Q Consensus 24 g~~tglVVDiG~~~t~v~pv 43 (254)
+..-|+|||+|.+.|++..+
T Consensus 32 ~~~y~iviDaGSsgtRl~VY 51 (452)
T 3zx3_A 32 NVKYGIVLDAGSSHTNLYIY 51 (452)
T ss_dssp CEEEEEEEEECSSCEEEEEE
T ss_pred CceEEEEEEcCCCCcEEEEE
Confidence 44678999999999999876
No 73
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=20.12 E-value=1.3e+02 Score=24.54 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=29.5
Q ss_pred EEEEEcCCCceeEEEe-ecceeeccccEEeecCHHHHHHHHHHHH
Q 025352 28 GCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQEL 71 (254)
Q Consensus 28 glVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~gG~~i~~~l~~~l 71 (254)
.+.||+|...+.++.+ .+|.++.......+.+...+.+.+.+.+
T Consensus 4 ~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~~~~~~~~~~~i~~~i 48 (321)
T 3vgl_A 4 TIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEGIVDAICAAV 48 (321)
T ss_dssp EEEEEECSSEEEEEEECTTCCBCCCEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEEECCCCCEEEEEEeeCCCCHHHHHHHHHHHH
Confidence 5889999999999888 4677776544333445555555555444
Done!