Query 025354
Match_columns 254
No_of_seqs 114 out of 336
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 9E-112 3E-116 766.6 20.0 246 9-254 17-262 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 2E-111 7E-116 762.9 16.8 245 8-252 16-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 4E-109 1E-113 747.6 24.4 242 8-249 16-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 1.1E-99 4E-104 681.4 20.5 222 9-231 18-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 2.9E-85 1E-89 578.3 20.3 203 27-236 1-204 (213)
6 2cqj_A BRMS2, U3 small nucleol 96.9 0.00052 1.8E-08 50.3 2.7 43 44-86 17-61 (71)
7 1p9k_A ORF, hypothetical prote 96.8 0.00046 1.6E-08 50.8 2.2 57 34-93 21-77 (79)
8 3j20_D 30S ribosomal protein S 96.2 0.0019 6.5E-08 55.6 2.6 44 44-87 112-157 (180)
9 3bbn_D Ribosomal protein S4; s 96.0 0.0066 2.3E-07 52.9 5.1 44 44-87 98-141 (201)
10 1c05_A Ribosomal protein S4 de 96.0 0.007 2.4E-07 50.5 4.9 50 36-86 53-102 (159)
11 2vqe_D 30S ribosomal protein S 95.4 0.015 5.1E-07 50.6 4.9 43 44-86 108-150 (209)
12 3u5c_J 40S ribosomal protein S 95.3 0.0044 1.5E-07 54.0 1.2 44 44-87 116-161 (197)
13 2xzm_D Ribosomal protein S4 co 95.3 0.008 2.8E-07 51.5 2.6 42 44-85 116-159 (181)
14 2do3_A Transcription elongatio 95.2 0.027 9.1E-07 41.6 4.8 46 167-216 18-63 (69)
15 1dm9_A Hypothetical 15.5 KD pr 95.1 0.056 1.9E-06 43.7 7.0 61 31-93 6-66 (133)
16 1ksk_A Ribosomal small subunit 94.9 0.038 1.3E-06 47.6 6.0 51 33-85 3-53 (234)
17 3r8n_D 30S ribosomal protein S 94.8 0.0088 3E-07 52.3 1.5 44 44-87 104-147 (205)
18 1vio_A Ribosomal small subunit 94.2 0.083 2.8E-06 45.9 6.4 64 34-99 3-72 (243)
19 2ckk_A KIN17; beta barrel, rib 94.2 0.093 3.2E-06 42.5 6.2 41 149-192 56-96 (127)
20 3dh3_A Ribosomal large subunit 93.8 0.089 3E-06 47.7 6.0 67 32-101 5-79 (290)
21 2k6p_A Uncharacterized protein 93.5 0.019 6.5E-07 42.8 0.9 53 37-91 4-56 (92)
22 3iz6_C 40S ribosomal protein S 92.0 0.0041 1.4E-07 54.1 -5.3 42 44-85 118-159 (195)
23 2ktl_A Tyrosyl-tRNA synthetase 92.0 0.12 4.1E-06 43.8 3.8 75 35-110 51-139 (164)
24 1v9f_A Ribosomal large subunit 91.6 0.069 2.3E-06 48.5 2.1 53 32-85 15-67 (325)
25 2jan_A Tyrosyl-tRNA synthetase 91.4 0.39 1.3E-05 46.0 7.1 66 35-106 357-422 (432)
26 1h3f_A Tyrosyl-tRNA synthetase 91.3 0.33 1.1E-05 46.4 6.5 44 33-77 368-411 (432)
27 3hp7_A Hemolysin, putative; st 90.0 0.17 5.8E-06 45.8 3.1 51 35-86 8-60 (291)
28 1vq8_T 50S ribosomal protein L 86.1 1.3 4.4E-05 35.7 5.6 56 163-221 39-101 (120)
29 1jil_A Tyrrs, tyrosyl-tRNA syn 85.7 0.15 5.2E-06 48.4 0.0 49 33-82 352-400 (420)
30 3j21_U 50S ribosomal protein L 82.0 1.6 5.3E-05 35.2 4.5 39 163-204 42-80 (121)
31 2ts1_A Tyrosyl-tRNA synthetase 80.3 0.34 1.2E-05 46.1 0.0 44 34-78 352-395 (419)
32 1nz9_A Transcription antitermi 80.1 4.2 0.00014 27.7 5.6 43 165-209 3-45 (58)
33 3u5e_Y L33, YL33, 60S ribosoma 78.3 2.9 0.0001 34.0 5.0 56 163-221 46-108 (127)
34 3r8s_U 50S ribosomal protein L 73.5 2.9 0.0001 32.6 3.6 34 166-203 3-36 (102)
35 3v2d_Y 50S ribosomal protein L 73.1 2.1 7.1E-05 33.9 2.7 28 165-192 5-32 (110)
36 4a17_S RPL26, 60S ribosomal pr 73.1 4.3 0.00015 33.3 4.7 39 163-204 45-83 (135)
37 3iz5_Y 60S ribosomal protein L 72.6 3.7 0.00013 34.3 4.2 72 163-246 45-123 (150)
38 2ftc_N Mitochondrial ribosomal 71.4 4.7 0.00016 31.1 4.3 23 170-192 1-23 (96)
39 2zjr_R 50S ribosomal protein L 70.8 3.1 0.0001 33.1 3.2 36 166-204 15-50 (115)
40 2zkr_t 60S ribosomal protein L 67.8 2.9 9.8E-05 34.7 2.5 55 164-221 46-108 (145)
41 4a18_F RPL14; ribosome, eukary 65.8 4.7 0.00016 32.7 3.4 32 167-202 7-38 (126)
42 3iz5_N 60S ribosomal protein L 58.2 5.4 0.00018 32.7 2.5 26 167-192 7-32 (134)
43 2wg5_A General control protein 57.0 25 0.00084 27.2 6.0 47 129-175 52-104 (109)
44 2e6z_A Transcription elongatio 56.1 5.3 0.00018 27.7 1.8 27 165-191 6-32 (59)
45 4a18_N RPL27, ribosomal protei 50.6 10 0.00034 31.5 2.9 27 167-193 5-31 (144)
46 3izc_N 60S ribosomal protein R 50.2 8.5 0.00029 31.6 2.4 32 167-202 15-46 (138)
47 2joy_A 50S ribosomal protein L 49.8 8.7 0.0003 29.3 2.3 25 167-191 4-28 (96)
48 3j21_5 50S ribosomal protein L 49.5 7.6 0.00026 29.1 1.9 25 167-191 4-28 (83)
49 3m9b_A Proteasome-associated A 41.2 42 0.0014 30.1 5.6 51 144-209 133-183 (251)
50 3p8b_B Transcription antitermi 39.9 15 0.00052 29.4 2.4 28 165-192 90-117 (152)
51 3kdf_D Replication protein A 3 38.8 1.3E+02 0.0045 23.1 9.3 78 59-139 21-109 (132)
52 3e0e_A Replication protein A; 38.1 67 0.0023 23.7 5.7 13 166-179 63-75 (97)
53 2x1d_A Acyl-coenzyme A\:6-amin 37.3 63 0.0022 28.5 6.3 28 32-60 177-204 (357)
54 2jvv_A Transcription antitermi 33.3 74 0.0025 25.9 5.6 29 164-192 125-153 (181)
55 1i3z_A EWS/FLI1 activated tran 33.0 1.3E+02 0.0043 21.8 6.4 54 47-104 9-66 (103)
56 2in0_A Endonuclease PI-MTUI; h 28.9 73 0.0025 24.5 4.7 25 197-221 54-78 (139)
57 2iwa_A Glutamine cyclotransfer 28.9 97 0.0033 27.1 6.0 60 102-168 127-191 (266)
58 2lcj_A PAB POLC intein; hydrol 28.1 1.3E+02 0.0046 24.4 6.4 43 113-155 74-120 (185)
59 1d4t_A T cell signal transduct 28.1 1.1E+02 0.0039 22.2 5.5 54 47-104 10-67 (104)
60 3lag_A Uncharacterized protein 26.6 1.1E+02 0.0038 22.2 5.1 59 116-179 17-75 (98)
61 4gop_B Putative uncharacterize 26.4 2E+02 0.0068 22.2 6.9 78 59-139 26-114 (136)
62 3gvz_A Uncharacterized protein 26.2 48 0.0016 29.6 3.5 30 30-59 103-132 (299)
63 1zv1_A Doublesex protein; UBA 25.9 28 0.00096 25.2 1.5 40 7-61 12-52 (65)
64 3hrd_D Nicotinate dehydrogenas 25.8 39 0.0013 28.0 2.6 53 32-88 21-81 (160)
65 1ka6_A SH2 domain protein 1A; 25.2 1.2E+02 0.004 23.3 5.2 53 48-104 11-67 (128)
66 2hbp_A Cytoskeleton assembly c 23.4 71 0.0024 23.3 3.3 44 91-148 5-48 (68)
67 1q7h_A Conserved hypothetical 23.2 47 0.0016 26.4 2.6 38 122-160 73-115 (153)
68 3iuw_A Activating signal coint 23.0 51 0.0017 24.7 2.6 17 139-155 31-47 (83)
69 3dm3_A Replication factor A; p 22.3 1.9E+02 0.0065 21.7 5.8 24 114-137 15-38 (105)
70 2oqc_A Penicillin V acylase; N 22.2 2.7E+02 0.0094 24.7 7.8 65 31-109 95-159 (327)
71 3bbo_W Ribosomal protein L24; 21.6 12 0.00041 32.3 -1.3 26 167-192 69-94 (191)
72 2bjf_A Choloylglycine hydrolas 21.4 3E+02 0.01 24.5 7.8 65 31-109 97-161 (329)
73 4eql_A 4-substituted benzoates 21.4 24 0.00081 34.8 0.6 59 89-155 351-409 (581)
74 2qf4_A Cell shape determining 21.4 3E+02 0.01 22.3 7.3 60 143-222 106-166 (172)
75 1mkh_A Metrs;, C-terminal doma 21.2 1.1E+02 0.0037 23.4 4.2 17 183-199 14-30 (107)
76 2quy_A Penicillin acylase; aut 20.4 58 0.002 29.2 2.9 65 31-109 97-161 (335)
77 3lul_A 4-amino-4-deoxychorisma 20.4 1.8E+02 0.0061 25.1 6.0 48 198-247 161-208 (272)
78 1i2k_A 4-amino-4-deoxychorisma 20.4 1.9E+02 0.0067 24.5 6.2 46 198-245 160-205 (269)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.1e-112 Score=766.63 Aligned_cols=246 Identities=85% Similarity=1.335 Sum_probs=199.3
Q ss_pred eeeeecccceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCC
Q 025354 9 TSLVVHLYVCQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTN 88 (254)
Q Consensus 9 ~~~l~Kk~~~~a~rpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~ 88 (254)
+|||+||+++||||||||||++++||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+||
T Consensus 17 ~W~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~ 96 (265)
T 3iz6_D 17 HWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTG 96 (265)
T ss_dssp --------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSC
T ss_pred ccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEee
Q 025354 89 ENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 168 (254)
Q Consensus 89 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~fe 168 (254)
|+|||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||||++||+|||||+
T Consensus 97 e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~d~ikfe 176 (265)
T 3iz6_D 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFD 176 (265)
T ss_dssp CEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEEEECSSSCCEEEEECCS
T ss_pred CEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEEEEECCCCceeeEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHHH
Q 025354 169 VGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 248 (254)
Q Consensus 169 ~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi~~~~~e~~~~~~ 248 (254)
+||+||||||+|+|++|+|++|++|+|||++|||+|++|++|+|+++||||||++++||||||++|||||+++|||++|+
T Consensus 177 ~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~ 256 (265)
T 3iz6_D 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRD 256 (265)
T ss_dssp TTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCCC--------------
T ss_pred CCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHhC
Q 025354 249 AAQAAA 254 (254)
Q Consensus 249 ~~~~~~ 254 (254)
++++++
T Consensus 257 ~~~~~~ 262 (265)
T 3iz6_D 257 AAAQAA 262 (265)
T ss_dssp ------
T ss_pred HHhhhh
Confidence 888753
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=2.1e-111 Score=762.92 Aligned_cols=245 Identities=65% Similarity=1.056 Sum_probs=241.6
Q ss_pred eeeeeecccceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccC
Q 025354 8 LTSLVVHLYVCQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKT 87 (254)
Q Consensus 8 ~~~~l~Kk~~~~a~rpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt 87 (254)
=+|||+||+++||||||||||++++||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+|
T Consensus 16 ~~W~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt 95 (261)
T 3u5c_E 16 HHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDAT 95 (261)
T ss_dssp GGGCCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTT
T ss_pred cccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEe
Q 025354 88 NENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKF 167 (254)
Q Consensus 88 ~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f 167 (254)
||||||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||||++||+|||||
T Consensus 96 ~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d~ikf 175 (261)
T 3u5c_E 96 NENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKF 175 (261)
T ss_dssp TEEEECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEEEECC
T ss_pred CCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEEEEECCCCceeeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHH
Q 025354 168 DVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 247 (254)
Q Consensus 168 e~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi~~~~~e~~~~~ 247 (254)
++||+||||||+|+|++|+|++|++|+|||++|||+|++|++|+|+++||||||++++||||||++|||||+++|||++|
T Consensus 176 e~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~ 255 (261)
T 3u5c_E 176 DAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255 (261)
T ss_dssp CSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCTTTTCCCCHHHHHHHH
T ss_pred cCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHH
Q 025354 248 QAAQA 252 (254)
Q Consensus 248 ~~~~~ 252 (254)
++++.
T Consensus 256 ~~~~~ 260 (261)
T 3u5c_E 256 RAQQG 260 (261)
T ss_dssp TTTTC
T ss_pred HHhcc
Confidence 97653
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=4.1e-109 Score=747.59 Aligned_cols=242 Identities=52% Similarity=0.887 Sum_probs=238.8
Q ss_pred eeeeeecccceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhC--ceEEECCEEeccccCCCcceeEEEec
Q 025354 8 LTSLVVHLYVCQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQ--RHVLVDGKVRTDKTYPAGFMDVVSIP 85 (254)
Q Consensus 8 ~~~~l~Kk~~~~a~rpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~--~~V~VDGkvr~D~k~PvG~MDVIsI~ 85 (254)
-+|||+||+++||||||||||++++||||++||||+|+||+|++||++||+| |+|+||||||+|++||||||||||||
T Consensus 16 ~~W~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~ 95 (260)
T 2xzm_W 16 KSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIE 95 (260)
T ss_dssp GGGTCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEG
T ss_pred ccceeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEc
Confidence 4799999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCceEEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEE
Q 025354 86 KTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFI 165 (254)
Q Consensus 86 kt~e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i 165 (254)
+|||||||+||++|+|.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||||+||||++||+|||
T Consensus 96 kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI~d~i 175 (260)
T 2xzm_W 96 KTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFA 175 (260)
T ss_dssp GGTEEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTBEEEEETTTTEEECCC
T ss_pred CCCCEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCCeEEEeCCCCceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHH
Q 025354 166 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAR 245 (254)
Q Consensus 166 ~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi~~~~~e~~~ 245 (254)
||++||+||||||+|+||+|+|+++++|++|+|+|||+|++|++|+|+++||||||++++||||||++||||||++|||+
T Consensus 176 kfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp~~kgi~l~i~eer~ 255 (260)
T 2xzm_W 176 HLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERK 255 (260)
T ss_dssp BCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCSSSSSCCCCHHHHHH
T ss_pred EecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecCCCCCeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999877999999999999999999999
Q ss_pred HHHH
Q 025354 246 KRQA 249 (254)
Q Consensus 246 ~~~~ 249 (254)
+|++
T Consensus 256 ~~~~ 259 (260)
T 2xzm_W 256 RKFS 259 (260)
T ss_dssp HHTC
T ss_pred hhhc
Confidence 9874
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-99 Score=681.39 Aligned_cols=222 Identities=32% Similarity=0.504 Sum_probs=220.3
Q ss_pred eeeeecccceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCC
Q 025354 9 TSLVVHLYVCQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTN 88 (254)
Q Consensus 9 ~~~l~Kk~~~~a~rpspGPH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~ 88 (254)
+|||+||+++||||||||||++++||||++||||+|+||+|.|||++||+||+|+||||+|+|++|||||||||||++++
T Consensus 18 ~W~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~ 97 (243)
T 3j20_E 18 SWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETG 97 (243)
T ss_dssp TSCCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTT
T ss_pred ccccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecC---CCCccCCCeEEEecCCCeeeeEE
Q 025354 89 ENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKANDTIKLDLEENKITDFI 165 (254)
Q Consensus 89 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~---d~~ik~~Dtv~i~l~~~kI~d~i 165 (254)
|+||++||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|| ||.||+||||+||||++||+|||
T Consensus 98 e~fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~i 177 (243)
T 3j20_E 98 EHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVL 177 (243)
T ss_dssp EEEEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEE
T ss_pred ceeEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEE
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecC
Q 025354 166 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 231 (254)
Q Consensus 166 ~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp 231 (254)
||++||+||||||+|+||+|+|++|++|+|| +|+|||+|++|++|+|+++||||||+ ++||||||
T Consensus 178 kf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 178 PFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp ECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSCCSCC
T ss_pred eccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCccccCC
Confidence 9999999999999999999999999999988 99999999999999999999999999 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=2.9e-85 Score=578.34 Aligned_cols=203 Identities=33% Similarity=0.486 Sum_probs=189.9
Q ss_pred CCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 025354 27 PHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 106 (254)
Q Consensus 27 PH~~~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I 106 (254)
.|++++||||++||||+||||+|.|||++||+||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEE
Q 025354 107 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGI 186 (254)
Q Consensus 107 ~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~fe~G~~~~i~gG~n~G~vG~ 186 (254)
++|||+||||||++|++++||+|||+|||||||+||||.||+||||++|||++||+|||||++||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcce
Q 025354 187 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGI 236 (254)
Q Consensus 187 I~~i~~~~~s-~~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi 236 (254)
|++|++++|| +|+||++ ++|+|+++||||||+ ++|||.+|.+.=|
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 5999997 689999999999998 7999977665433
No 6
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00052 Score=50.32 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=38.7
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcc--eeEEEecc
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF--MDVVSIPK 86 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~--MDVIsI~k 86 (254)
+++|.|.++|++.+++|.|.|||++++.+-|.|-. -|.|++..
T Consensus 17 ~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 17 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred hCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 69999999999999999999999999999999876 67887543
No 7
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=96.82 E-value=0.00046 Score=50.79 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=48.3
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 025354 34 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL 93 (254)
Q Consensus 34 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRv 93 (254)
+-|--+|.+. +++.+.+||++.+.+|.|+|||+++++..+.+---|+|++. ++.+.+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~--~~~~~~ 77 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQV 77 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEE
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC--CEEEEE
Confidence 6788888875 89889999999999999999999999988888777999994 454443
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0019 Score=55.56 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=40.6
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 87 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~M--DVIsI~kt 87 (254)
+++|.|.++|++.+.+|.|.|||.+++++.|.|-.- |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 589999999999999999999999999999999886 99999653
No 9
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.05 E-value=0.0066 Score=52.89 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=40.0
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccC
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKT 87 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt 87 (254)
+++|.|.++|++.+.+|.|.|||++++++.|.|---|+|++...
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccc
Confidence 46788999999999999999999999999999988899999643
No 10
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=96.01 E-value=0.007 Score=50.48 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=41.7
Q ss_pred hHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 025354 36 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 86 (254)
Q Consensus 36 L~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 86 (254)
|--+|.. +++|.+.++|++.+.+|.|.|||++++++.|.+---|+|++..
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 3334443 4688999999999999999999999999999887779999954
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=95.42 E-value=0.015 Score=50.63 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=39.0
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 86 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k 86 (254)
+++|.+.++|++++.+|.|.|||++++++.|.+---|+|++..
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 4678899999999999999999999999999988789999964
No 12
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=95.33 E-value=0.0044 Score=54.03 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=39.4
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 87 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~M--DVIsI~kt 87 (254)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.= |.|++...
T Consensus 116 ~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 116 LGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp SSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 689999999999999999999999999999988775 67887654
No 13
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=95.25 E-value=0.008 Score=51.53 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=37.4
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCccee--EEEec
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMD--VVSIP 85 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MD--VIsI~ 85 (254)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.-| .|++.
T Consensus 116 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~ 159 (181)
T 2xzm_D 116 LNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFA 159 (181)
T ss_dssp TTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECT
T ss_pred ccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEe
Confidence 6899999999999999999999999999999986554 67763
No 14
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.15 E-value=0.027 Score=41.64 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=36.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeece
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 216 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~F~T~~~~ 216 (254)
|++|+.+-|++|+|.|+.|.|..++.. -++.+.|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHH
Confidence 789999999999999999999998631 3555777777777655444
No 15
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=95.11 E-value=0.056 Score=43.71 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=48.1
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 025354 31 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL 93 (254)
Q Consensus 31 ~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRv 93 (254)
.+++-|--||... .+..+...|++++.+|.|.|||+++ ...+.|-.-|+|+|...++.|.+
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~ 66 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeE
Confidence 3456788888764 3346899999999999999999987 78888877899999765555443
No 16
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=94.94 E-value=0.038 Score=47.63 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=42.5
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 025354 33 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 85 (254)
Q Consensus 33 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~ 85 (254)
++-|--+|.... ..+.++|++.+.+|.|+|||+++++..+++---|+|++.
T Consensus 3 ~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 3 HMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred cccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 456777888763 678899999999999999999998777777666999985
No 17
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.78 E-value=0.0088 Score=52.33 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=39.6
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccC
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKT 87 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt 87 (254)
+++|.|.++|++++.+|.|.|||++++++.|.|---|+|+|...
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 47889999999999999999999999999888877799999653
No 18
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.21 E-value=0.083 Score=45.92 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=49.1
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc-----CCce-EEEEEcCCC
Q 025354 34 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKG 99 (254)
Q Consensus 34 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k-----t~e~-yRvl~d~kg 99 (254)
+-|--+|.... ..+.++|++.+.+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|
T Consensus 3 ~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G 72 (243)
T 1vio_A 3 LRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQG 72 (243)
T ss_dssp EEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTT
T ss_pred ccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCC
Confidence 45667787763 6789999999999999999999988888887778998853 2445 555555555
No 19
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.20 E-value=0.093 Score=42.45 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 149 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 149 ~Dtv~i~l~~~kI~d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
++.+ .+....+--.+| +.|+.++|+.|.|.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4444 454444555666 8999999999999999999999853
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=93.81 E-value=0.089 Score=47.67 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=53.1
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc--------CCceEEEEEcCCCce
Q 025354 32 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGRF 101 (254)
Q Consensus 32 ~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~k--------t~e~yRvl~d~kgrf 101 (254)
+++-|--+|.+. +++ +.++|++.+.+|.|.|||+++ +..+.+---|+|++.. .+++|-++.-+.|-.
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~~ 79 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIV 79 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCB
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCccc
Confidence 467788899886 554 899999999999999999998 7888776669999853 245677777777643
No 21
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.50 E-value=0.019 Score=42.83 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=38.3
Q ss_pred HHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceE
Q 025354 37 ILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENF 91 (254)
Q Consensus 37 ~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~y 91 (254)
--+|.. ++++.+...|++++.+|.|+|||+++ +..|.+---|+|+|...++.+
T Consensus 4 D~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 4 DKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 344554 24444555699999999999999997 677888666999996544443
No 22
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.00 E-value=0.0041 Score=54.14 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=39.0
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 025354 44 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 85 (254)
Q Consensus 44 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~ 85 (254)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.=|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 589999999999999999999999999999999888887775
No 23
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=91.99 E-value=0.12 Score=43.83 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=54.0
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE-----------Eec---cCCceEEEEEcCCCc
Q 025354 35 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV-----------SIP---KTNENFRLLYDTKGR 100 (254)
Q Consensus 35 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVI-----------sI~---kt~e~yRvl~d~kgr 100 (254)
+|+=+|- ..++|.+.+|||+.|.||-|+|||....|..-|.++||-= .+. -.+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 3444454 3699999999999999999999999888854477777641 112 135667777777778
Q ss_pred eEEEEcChhh
Q 025354 101 FRLHSLRDEE 110 (254)
Q Consensus 101 f~l~~I~~eE 110 (254)
|.++.+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 8777765444
No 24
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=91.65 E-value=0.069 Score=48.47 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 025354 32 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 85 (254)
Q Consensus 32 ~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~ 85 (254)
.++.|--+|...+ ...+.++|++.+.+|.|+|||+++.+..+.+---|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3566777777654 3467899999999999999999978888888777999985
No 25
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.35 E-value=0.39 Score=45.97 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=48.6
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 025354 35 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 106 (254)
Q Consensus 35 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I 106 (254)
+++=+|.. .++|.+..|||+.+.||-|+|||..++|..+.+.--|.+ +..|-+|---|.+|.++.+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~~ 422 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVER 422 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEEE
Confidence 56666764 799999999999999999999999999999877544332 2244455555555555544
No 26
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.32 E-value=0.33 Score=46.39 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.1
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCc
Q 025354 33 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAG 77 (254)
Q Consensus 33 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG 77 (254)
.++++=+|.. .++|.+..|||+.+.||-|+|||..++|..+-+.
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceec
Confidence 4567777774 6999999999999999999999999999987553
No 27
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=89.97 E-value=0.17 Score=45.84 Aligned_cols=51 Identities=6% Similarity=-0.206 Sum_probs=42.5
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECC-E-EeccccCCCcceeEEEecc
Q 025354 35 PLILVLRNRLKYALTYREVIAILMQRHVLVDG-K-VRTDKTYPAGFMDVVSIPK 86 (254)
Q Consensus 35 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDG-k-vr~D~k~PvG~MDVIsI~k 86 (254)
-|-.+|-. .+++.+..+|++.|++|.|.||| + +.+++.+.|---|.|++..
T Consensus 8 RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 8 RVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 45556644 47889999999999999999999 8 8888888877779999964
No 28
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=86.06 E-value=1.3 Score=35.72 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=40.7
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEeE--eeceEEEEc
Q 025354 163 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFAT--RLGNVFTIG 221 (254)
Q Consensus 163 d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~-----~g~~F~T--~~~~vfvIG 221 (254)
..+++..|+.+.|+.|+.-|..|+|..+.. ..+.|+|+.- +|.+++- -.+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457889999999999999999999999853 3356777655 3444443 246776654
No 29
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=85.74 E-value=0.15 Score=48.43 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE
Q 025354 33 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV 82 (254)
Q Consensus 33 slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVI 82 (254)
.++|.=+|.. .++|.+..|||+.+.||-|+|||.+++|..+-+.--|.+
T Consensus 352 ~i~l~~lL~~-agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIE-TGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHHH-cCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 3567767764 699999999999999999999999999998766544443
No 30
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.00 E-value=1.6 Score=35.23 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=31.1
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 025354 163 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 204 (254)
Q Consensus 163 d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d 204 (254)
..+++..|+.+.|+.|+.-|..|+|..+... .+.|+||.
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEg 80 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEG 80 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETT
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeC
Confidence 3578899999999999999999999998532 24566543
No 31
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=80.26 E-value=0.34 Score=46.14 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcc
Q 025354 34 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF 78 (254)
Q Consensus 34 lPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~ 78 (254)
+++.=+|.. .++|.+..|||+.+.||-|+|||..++|..+.+.-
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~ 395 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTA 395 (419)
T ss_dssp ---------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccCh
Confidence 456666664 69999999999999999999999999999876643
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=80.12 E-value=4.2 Score=27.71 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=31.1
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 025354 165 IKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 209 (254)
Q Consensus 165 i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~ 209 (254)
+.|++|+.+.|+.|.-.|..|+|.++... ...-.|.+. .-|.+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~-k~~v~V~v~-~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPE-RGKVKVMVT-IFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETT-TTEEEEEEE-SSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCC-CCEEEEEEE-eCCCE
Confidence 46889999999999999999999998532 122344443 44444
No 33
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=78.32 E-value=2.9 Score=33.97 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=38.3
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 025354 163 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 221 (254)
Q Consensus 163 d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d-----~~g~~F~--T~~~~vfvIG 221 (254)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+||. .+|.+.+ .-.+||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECC---CCEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 3578888999999999999999999998543 24566654 4554332 2234555443
No 34
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=73.46 E-value=2.9 Score=32.63 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=26.8
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE
Q 025354 166 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 203 (254)
Q Consensus 166 ~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~ 203 (254)
++..|+.++|+.|+.-|..|+|.++... +.|+|+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVe 36 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVE 36 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEe
Confidence 4567999999999999999999998542 445554
No 35
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=73.13 E-value=2.1 Score=33.93 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 165 IKFDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 165 i~fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
+++..|+.+.|+.|+.-|..|+|.++..
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 32 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLP 32 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEEC
Confidence 4677899999999999999999999864
No 36
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=73.12 E-value=4.3 Score=33.34 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=30.5
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 025354 163 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 204 (254)
Q Consensus 163 d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d 204 (254)
-.++...|+.++|+.|+.-|..|+|..+.. ..+.|+||.
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~---kk~~V~VEg 83 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYR---KKWAIHVEK 83 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETT
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEc---CCCEEEEeC
Confidence 356788899999999999999999999853 234555543
No 37
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=72.60 E-value=3.7 Score=34.31 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=46.0
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEccCCCceEecCCCcc
Q 025354 163 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGSKPWVSLPKGKG 235 (254)
Q Consensus 163 d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d-----~~g~~F~--T~~~~vfvIGk~~kp~islp~~kg 235 (254)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ .-.|||+++-- --++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~--------k~dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL--------KLDK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC--------CCCS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc--------cCCh-
Confidence 3578889999999999999999999998532 24555543 5564332 22356665542 1122
Q ss_pred eeeehHHHHHH
Q 025354 236 IKLSIIEEARK 246 (254)
Q Consensus 236 i~~~~~e~~~~ 246 (254)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (150)
T 3iz5_Y 113 DRKAILDRKAS 123 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccchh
Confidence 55666666543
No 38
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=71.42 E-value=4.7 Score=31.10 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.9
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 025354 170 GNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 170 G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999854
No 39
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=70.79 E-value=3.1 Score=33.11 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.4
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 025354 166 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 204 (254)
Q Consensus 166 ~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d 204 (254)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|+|+.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 678899999999999999999999853 235666654
No 40
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=67.78 E-value=2.9 Score=34.70 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.2
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcCC-----CCeEeE--eeceEEEEc
Q 025354 164 FIKFDVGNIVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFAT--RLGNVFTIG 221 (254)
Q Consensus 164 ~i~fe~G~~~~i~gG~n~G~v-G~I~~i~~~~~s~~~V~i~d~~-----g~~F~T--~~~~vfvIG 221 (254)
.+++..|+.+.|+.|+.-|.. |+|..+.. ..+.|+|+.-+ |.+++- -.+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 367888999999999999999 99999853 23566665543 433222 246666654
No 41
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=65.77 E-value=4.7 Score=32.71 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=27.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 202 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i 202 (254)
.|+|-.|++..|.+.|+.++|.+|..+ +-|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999654 45555
No 42
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=58.18 E-value=5.4 Score=32.67 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
.|+|-.|++..|++.|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999854
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=57.03 E-value=25 Score=27.18 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred eEEEccCceeEecC-----C-CCccCCCeEEEecCCCeeeeEEEeeCCcEEEE
Q 025354 129 PYINTYDGRTIRYP-----D-PLIKANDTIKLDLEENKITDFIKFDVGNIVMV 175 (254)
Q Consensus 129 ~ql~~hDGrni~~~-----d-~~ik~~Dtv~i~l~~~kI~d~i~fe~G~~~~i 175 (254)
..+.+..|+++.++ | ..+++|++|-++-.+..|++.+|++.+..+.+
T Consensus 52 ~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp EEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred EEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 33444556664332 3 36999999999999999999999999877643
No 44
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.10 E-value=5.3 Score=27.74 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 025354 165 IKFDVGNIVMVTGGRNRGRVGIIKNRE 191 (254)
Q Consensus 165 i~fe~G~~~~i~gG~n~G~vG~I~~i~ 191 (254)
..|++|+.+-|+.|.=.|..|+|.++.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 468999999999999999999999985
No 45
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=50.58 E-value=10 Score=31.48 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.0
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEe
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREKH 193 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~~ 193 (254)
+++|..|+|..|+++|+-++|.++...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999987543
No 46
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=50.22 E-value=8.5 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=26.7
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 202 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i 202 (254)
.++|-.|++..|++.|+..+|.+|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 468999999999999999999998543 45555
No 47
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=49.83 E-value=8.7 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNRE 191 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~ 191 (254)
+++|..|++..|++.|+..+|.++.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i 28 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII 28 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe
Confidence 5789999999999999999999873
No 48
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.55 E-value=7.6 Score=29.08 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNRE 191 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~ 191 (254)
+++|..|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 6789999999999999999999874
No 49
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.16 E-value=42 Score=30.09 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 025354 144 PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 209 (254)
Q Consensus 144 ~~ik~~Dtv~i~l~~~kI~d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~~s~~~V~i~d~~g~~ 209 (254)
..+++|++|.++ ++..|++.++|+. +|.+-++.|+- ++ .+.+.|-+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 479999999996 8999999999987 56777776653 11 2344445555554
No 50
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.90 E-value=15 Score=29.39 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=25.8
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 165 IKFDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 165 i~fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
..|++|+.+-|+.|.-.|..|+|.++..
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~ 117 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDE 117 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEET
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeC
Confidence 4689999999999999999999999964
No 51
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=38.76 E-value=1.3e+02 Score=23.11 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=53.9
Q ss_pred CceEEECCEEeccccCCCcceeEEEeccCCceEEEEE-cCCC-ceEEEEcChhh------hc---ceeEEEEEEEEeeCC
Q 025354 59 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFRLHSLRDEE------AK---FKLCKVRSVQFGQKG 127 (254)
Q Consensus 59 ~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~-d~kg-rf~l~~I~~eE------a~---~KLcKV~~k~~~~gg 127 (254)
++.+.+||....-..+ ||. |.++.+...++.+.. |..| .+....-..++ +. -..+||.+....-+|
T Consensus 21 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999999887765 566 667766666666544 6668 77766554332 11 368999999888899
Q ss_pred ceEEEccCceeE
Q 025354 128 IPYINTYDGRTI 139 (254)
Q Consensus 128 ~~ql~~hDGrni 139 (254)
..||+.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988644443
No 52
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=38.15 E-value=67 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.504 Sum_probs=7.9
Q ss_pred EeeCCcEEEEECCC
Q 025354 166 KFDVGNIVMVTGGR 179 (254)
Q Consensus 166 ~fe~G~~~~i~gG~ 179 (254)
.|++|+.+.| .|.
T Consensus 63 ~i~~Gdvv~i-~g~ 75 (97)
T 3e0e_A 63 EVKKGDIAEV-SGY 75 (97)
T ss_dssp CCCTTCEEEE-EEE
T ss_pred ccCCCCEEEE-EEE
Confidence 5666776666 444
No 53
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=37.25 E-value=63 Score=28.55 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=25.9
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCc
Q 025354 32 ECLPLILVLRNRLKYALTYREVIAILMQR 60 (254)
Q Consensus 32 ~slPL~i~LRd~LkyA~t~rEak~Il~~~ 60 (254)
..+|...++|..|. +.|.+||..+|.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999854
No 54
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=33.32 E-value=74 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.0
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 164 FIKFDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 164 ~i~fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
...|++|+.+-|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 34789999999999999999999999854
No 55
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=32.95 E-value=1.3e+02 Score=21.83 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=33.8
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 025354 47 ALTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 104 (254)
Q Consensus 47 A~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt~--e~yRvl~d~kgrf~l~ 104 (254)
..+..||.++|.+.. .||- ||.....|--+ ++|+-..+ .|||+..+..|.|.+.
T Consensus 9 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 9 CLTKRECEALLLKGG--VDGNFLIRDSESVPGAL--CLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECSSSTTCE--EEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC--CCceEEEEeCCCCCCCE--EEEEEECCEEEEEEEEECCCCeEEEe
Confidence 357789999998643 4665 55554444223 66664332 5788777777777553
No 56
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=28.89 E-value=73 Score=24.47 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=16.8
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEc
Q 025354 197 FETIHIQDALGHEFATRLGNVFTIG 221 (254)
Q Consensus 197 ~~~V~i~d~~g~~F~T~~~~vfvIG 221 (254)
..++.|+..+|.+..+-.+.-|...
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 54 RDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEET
T ss_pred cEEEEEEeCCCCEEEecCCCeEEec
Confidence 3577777777777766666666644
No 57
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=28.88 E-value=97 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=37.1
Q ss_pred EEEEcChhhhcceeEEEEEEEEeeCCce-----EEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEee
Q 025354 102 RLHSLRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 168 (254)
Q Consensus 102 ~l~~I~~eEa~~KLcKV~~k~~~~gg~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~fe 168 (254)
.++-|+.+ .+|..+ .+.+..+|.| .+.+.||+= |.. ....++..+||..+++++..|++.
T Consensus 127 ~l~viD~~--t~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yvn-~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 127 ILYEIDPH--TFKLIK--KHNVKYNGHRVIRLNELEYINGEV--WAN-IWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEECTT--TCCEEE--EEECEETTEECCCEEEEEEETTEE--EEE-ETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEEECC--CCcEEE--EEEECCCCcccccceeEEEECCEE--EEe-cCCCCeEEEEECCCCcEEEEEECC
Confidence 34555543 334433 3344445555 445568853 322 245788999999999999999985
No 58
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=28.07 E-value=1.3e+02 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=28.5
Q ss_pred ceeEEEEE----EEEeeCCceEEEccCceeEecCCCCccCCCeEEEe
Q 025354 113 FKLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 155 (254)
Q Consensus 113 ~KLcKV~~----k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 155 (254)
-++.||+- ...++..+|.++..+|.-.-..-.++++||.|.+-
T Consensus 74 ~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 74 DHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp SCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred ceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 34666642 34467788888888776443344568999988863
No 59
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=28.06 E-value=1.1e+02 Score=22.15 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=33.1
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 025354 47 ALTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 104 (254)
Q Consensus 47 A~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt~--e~yRvl~d~kgrf~l~ 104 (254)
..+..||.++|.+.. .||- ||.....|-.+ ++|+--.+ .|||+..+..|.|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSSSTTCE--EEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCCCCCCE--EEEEEECCeEEEEEEEECCCCeEEEe
Confidence 357789999997532 3564 45443344333 66664332 5888887777777654
No 60
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.63 E-value=1.1e+02 Score=22.21 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=39.3
Q ss_pred EEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCC
Q 025354 116 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 179 (254)
Q Consensus 116 cKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~fe~G~~~~i~gG~ 179 (254)
+||...+.-+|+..-+..|..+...+ +=+.-++.+..++++. ..+.+.+|+..++--|.
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~----~v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~ 75 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV 75 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC
T ss_pred EEEEEEEECCCCccCcEECCCcEEEE----EEeccEEEEEeCCCce-EEEEecCCcEEEEcCCC
Confidence 67777888899999999999887644 2223455566665543 23456778888876663
No 61
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=26.43 E-value=2e+02 Score=22.20 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=50.9
Q ss_pred CceEEECCEEeccccCCCcceeEEEeccCCceEEEE-EcCCCceEEEEcChhh-------hc---ceeEEEEEEEEeeCC
Q 025354 59 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEE-------AK---FKLCKVRSVQFGQKG 127 (254)
Q Consensus 59 ~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl-~d~kgrf~l~~I~~eE-------a~---~KLcKV~~k~~~~gg 127 (254)
++...+||...+-..+ ||. |.++.....++.+. -|..|.+....-...+ +. -.++||.+....-+|
T Consensus 26 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g 102 (136)
T 4gop_B 26 DAEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQN 102 (136)
T ss_dssp SCCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCC
Confidence 3567888877776654 555 66676655655544 4667877665543222 11 378999999888899
Q ss_pred ceEEEccCceeE
Q 025354 128 IPYINTYDGRTI 139 (254)
Q Consensus 128 ~~ql~~hDGrni 139 (254)
.+||+.+.=|.+
T Consensus 103 ~~qi~~~~ir~v 114 (136)
T 4gop_B 103 RRSISSGHMRPV 114 (136)
T ss_dssp EEEEEESEEEEC
T ss_pred EEEEEEEEEEEC
Confidence 999988654443
No 62
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=26.17 E-value=48 Score=29.59 Aligned_cols=30 Identities=20% Similarity=-0.037 Sum_probs=21.8
Q ss_pred CcccchhHHHHHhhhcccccHHHHHHHHhC
Q 025354 30 SRECLPLILVLRNRLKYALTYREVIAILMQ 59 (254)
Q Consensus 30 ~~~slPL~i~LRd~LkyA~t~rEak~Il~~ 59 (254)
.+...|...++|-.|.++.|..||..+|.+
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~~ 132 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAADK 132 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHHh
Confidence 344569999999999999999999999984
No 63
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=25.94 E-value=28 Score=25.17 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=30.2
Q ss_pred ceeeeeecccceeccCCCCCCCCCcccchhHHHHHhhhcccc-cHHHHHHHHhCce
Q 025354 7 CLTSLVVHLYVCQAPKPSSGPHKSRECLPLILVLRNRLKYAL-TYREVIAILMQRH 61 (254)
Q Consensus 7 ~~~~~l~Kk~~~~a~rpspGPH~~~~slPL~i~LRd~LkyA~-t~rEak~Il~~~~ 61 (254)
|-.|-|.|..+.| |.+||.+++ ||+|. +..||.+-+.+|+
T Consensus 12 ~c~kLLEkf~YpW------------EmMpLMYVI---LK~A~~d~eeAsrrI~Eg~ 52 (65)
T 1zv1_A 12 YCQKLLEKFRYPW------------ELMPLMYVI---LKDADANIEEASRRIEEGQ 52 (65)
T ss_dssp HHHHHHHHTTCCG------------GGHHHHHHH---HHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH------------HHhHHHHHH---HhccCCCHHHHHHHHHHHH
Confidence 4456666766655 789999986 89996 7789888877765
No 64
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=25.77 E-value=39 Score=27.99 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=40.9
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCc-----eEEECCEEeccccCCCcc---eeEEEeccCC
Q 025354 32 ECLPLILVLRNRLKYALTYREVIAILMQR-----HVLVDGKVRTDKTYPAGF---MDVVSIPKTN 88 (254)
Q Consensus 32 ~slPL~i~LRd~LkyA~t~rEak~Il~~~-----~V~VDGkvr~D~k~PvG~---MDVIsI~kt~ 88 (254)
...+|+=+||+.|++--+ |.=+.+| .|+|||+++.---.|+.- ++|++|+-.+
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTS
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCC
Confidence 357899999998876433 3335555 799999999999999865 5889997654
No 65
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=25.22 E-value=1.2e+02 Score=23.28 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=33.6
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccC--CceEEEEEcCCCceEEE
Q 025354 48 LTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKT--NENFRLLYDTKGRFRLH 104 (254)
Q Consensus 48 ~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~MDVIsI~kt--~e~yRvl~d~kgrf~l~ 104 (254)
.+..||.++|.+.. .||- ||.....|-.+ ++|+--. =.|||+..+..|.|.+.
T Consensus 11 isR~eAe~lL~~~~--~~G~FLVR~S~~~~g~y--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 11 ISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEEECSSSTTCE--EEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHhcCC--CCCEEEEeecCCCCCCE--EEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 56789999997432 3554 45444344333 7777543 35888888888877665
No 66
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.45 E-value=71 Score=23.27 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=33.0
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccC
Q 025354 91 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKA 148 (254)
Q Consensus 91 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~ 148 (254)
.|..-|..|.|.+ ||+| + -+++|.++|.--||..|-+|-.....
T Consensus 5 ~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~klS~ 48 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKLSN 48 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSBCH
T ss_pred ccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHcCH
Confidence 4888999999965 5643 2 24589999999999999877554443
No 67
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=23.17 E-value=47 Score=26.37 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred EEeeCCceEEEccCceeEecC-----CCCccCCCeEEEecCCCe
Q 025354 122 QFGQKGIPYINTYDGRTIRYP-----DPLIKANDTIKLDLEENK 160 (254)
Q Consensus 122 ~~~~gg~~ql~~hDGrni~~~-----d~~ik~~Dtv~i~l~~~k 160 (254)
.++..|..+-.+ .|.++..+ ++.++.||.|.|--+.++
T Consensus 73 v~vd~ga~~~l~-~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~ 115 (153)
T 1q7h_A 73 VTVDEGAEPHIL-NGSDLFAPGIVSMDDSIRKGDMIFVKSSKGY 115 (153)
T ss_dssp EEECTTTHHHHT-TTCCEEGGGEEEECTTCCTTCEEEEEETTSC
T ss_pred EEECHhHHHHHH-cCCCcCccccCcccCceeCCCEEEEEECCCC
Confidence 334444333333 36676322 567888888877766554
No 68
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=23.01 E-value=51 Score=24.72 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.3
Q ss_pred EecCCCCccCCCeEEEe
Q 025354 139 IRYPDPLIKANDTIKLD 155 (254)
Q Consensus 139 i~~~d~~ik~~Dtv~i~ 155 (254)
+|..|.+|++||.+.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46678889999988763
No 69
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=22.30 E-value=1.9e+02 Score=21.71 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=12.9
Q ss_pred eeEEEEEEEEeeCCceEEEccCce
Q 025354 114 KLCKVRSVQFGQKGIPYINTYDGR 137 (254)
Q Consensus 114 KLcKV~~k~~~~gg~~ql~~hDGr 137 (254)
.-+-|..+-+-.+..-++...||+
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~ 38 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGS 38 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSC
T ss_pred CeEEEEEEEEECCCceEEEcCCCC
Confidence 445555555544445555555664
No 70
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=22.15 E-value=2.7e+02 Score=24.66 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=45.8
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 025354 31 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 109 (254)
Q Consensus 31 ~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 109 (254)
...|+...|+|-.|..+.|-.||+.+|.+ +.+ -+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 95 ~~~l~~~~~i~~iL~~~~tV~Ea~~~L~~--~~i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 159 (327)
T 2oqc_A 95 TVHIVPHEFVTWVLSVCQSLEDVKEKIRS--LTI-----VEKKLDLLD------TVLPLHW-ILSDRTGRNLTIEPRAD 159 (327)
T ss_dssp SEEECGGGHHHHHHHHCCSHHHHHHHGGG--EEE-----BCCCBGGGT------BCCCEEE-EEECTTSCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHc--Cce-----ecccccCcC------CccceEE-EEEcCCCCEEEEEEecC
Confidence 45899999999999999999999999986 322 233444321 1133455 56788888777777553
No 71
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.56 E-value=12 Score=32.33 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 025354 167 FDVGNIVMVTGGRNRGRVGIIKNREK 192 (254)
Q Consensus 167 fe~G~~~~i~gG~n~G~vG~I~~i~~ 192 (254)
+..|+.+.|+.|+.-|..|+|.++..
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eecCCEEEEeecCCCCceEEEEEEEC
Confidence 66788899999999999999988753
No 72
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=21.39 E-value=3e+02 Score=24.46 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=45.9
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 025354 31 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 109 (254)
Q Consensus 31 ~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 109 (254)
...|+...|+|-.|..+.|-.||+.+|.+-. + -+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 97 ~~~l~~~~~~~~iL~~~~tV~Ea~~~l~~~~--i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (329)
T 2bjf_A 97 KTNIPVYNFLLWVLANFSSVEEVKEALKNAN--I-----VDIPISENI------PNTTLHW-MISDITGKSIVVEQTKE 161 (329)
T ss_dssp SEEEEGGGHHHHHHHHCSSHHHHHHHHTTEE--E-----ECCCSSTTC------CCCCEEE-EEECTTSCEEEEEECSS
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHhCc--e-----ecccccCcC------CCcceEE-EEEcCCCCEEEEEEecC
Confidence 4589999999999999999999999998632 2 233444321 1133455 46788888877777654
No 73
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=21.37 E-value=24 Score=34.84 Aligned_cols=59 Identities=12% Similarity=0.372 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEEEEEEeeCCceEEEccCceeEecCCCCccCCCeEEEe
Q 025354 89 ENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 155 (254)
Q Consensus 89 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 155 (254)
..|.+++|. ..|.+.+.++.|.. +.+-......++...+.+.|.-| -+| |.+||+|.+.
T Consensus 351 ~~~~L~~~~-~ffEFip~~~~~~~-~~v~l~eVe~G~~YelViTt~~G-L~R-----Yr~GD~v~v~ 409 (581)
T 4eql_A 351 VSYTFMPNM-SYFEFIPMDGGDKN-DVVDLEDVKLGCTYEPVVTNFAG-LYR-----MRVGDIVLVT 409 (581)
T ss_dssp CCEEECTTS-SEEEEEECSTTCCS-SCEEGGGCCTTCEEEEEEECSSS-CCS-----EECCEEEEEE
T ss_pred CceeecCCc-EEEEEEeccccCCC-cEeCHHHcCCCceEEEEEeeccc-eee-----EEcCCEEEEc
Confidence 479999999 89999998765422 45555555566666777777766 344 7888888765
No 74
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=21.36 E-value=3e+02 Score=22.30 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCCCeEeEeeceEEEEc
Q 025354 143 DPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 221 (254)
Q Consensus 143 d~~ik~~Dtv~i~l~~~kI~d~i~fe~G~~~~i~gG~n~G~vG~I~~i~~~~-~s~~~V~i~d~~g~~F~T~~~~vfvIG 221 (254)
+.+++.||.|+-+=-.+. |-+|= -||+|.+++... +.+..+.++=+.. -..+++|+||-
T Consensus 106 ~~~i~~GD~vvTSGl~g~------fP~Gi-----------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNF------NVADI-----------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSS------CCEEE-----------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCc------CCCCC-----------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 457889988887755542 22221 389999998765 4567788875432 34678999998
Q ss_pred c
Q 025354 222 K 222 (254)
Q Consensus 222 k 222 (254)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 75
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=21.22 E-value=1.1e+02 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.3
Q ss_pred eEEEEEeEEEecCCccE
Q 025354 183 RVGIIKNREKHKGSFET 199 (254)
Q Consensus 183 ~vG~I~~i~~~~~s~~~ 199 (254)
++|+|.+.++||.+..+
T Consensus 14 ~VG~I~~~e~hp~adkL 30 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKL 30 (107)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 68999999999987643
No 76
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=20.42 E-value=58 Score=29.17 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=45.5
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 025354 31 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 109 (254)
Q Consensus 31 ~~slPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~MDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 109 (254)
...+|...++|..|..+.|..||+.+|.+-. ..+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 97 ~~~l~~~~~~r~iL~~~~tV~EA~~~L~~~~-------i~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (335)
T 2quy_A 97 TRGINPVYVISQVLGNCVTVDDVIEKLTSYT-------LLNEANIILG------FAPPLHY-TFTDASGESIVIEPDKT 161 (335)
T ss_dssp CEEECGGGHHHHHHHHCCSHHHHHHHHHTEE-------EBCCCCTTTS------SCCCEEE-EEECTTCCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHcCCCHHHHHHHHhhCe-------eeccccCCCC------CCcceEE-EEEcCCCCEEEEEEeCC
Confidence 4589999999999999999999999999722 2233444321 1123444 45788888877777554
No 77
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=20.37 E-value=1.8e+02 Score=25.06 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHH
Q 025354 198 ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 247 (254)
Q Consensus 198 ~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi~~~~~e~~~~~ 247 (254)
+-+.+-|.+|..=|+..+|+|++- +.-|++-|...|+-.-+..++-.+
T Consensus 161 de~L~ld~~g~v~E~~~sNif~~~--~g~l~TP~l~~~iL~GitR~~ll~ 208 (272)
T 3lul_A 161 DDALFFNTENHVTETTCANLFLIE--NNILYTPRVEDGILPGITRARLIS 208 (272)
T ss_dssp SEEEEEETTSBEEEESSCEEEEEE--TTEEEECCGGGTCCCCHHHHHHHH
T ss_pred CEEEEECCCCeEEEcCCeEEEEEE--CCEEECCCCccCcCcCHHHHHHHH
Confidence 344455889999999999999993 456888887777766654444333
No 78
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=20.36 E-value=1.9e+02 Score=24.53 Aligned_cols=46 Identities=11% Similarity=-0.015 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHH
Q 025354 198 ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEAR 245 (254)
Q Consensus 198 ~~V~i~d~~g~~F~T~~~~vfvIGk~~kp~islp~~kgi~~~~~e~~~ 245 (254)
+-+.+-|.+|+.=|+-.+|||++= +.-|++-|...|+-.-+..++-
T Consensus 160 de~l~ld~~G~v~E~s~sNif~v~--~g~l~TP~~~~~iL~GitR~~l 205 (269)
T 1i2k_A 160 DEALVLDSEGWVTECCAANLFWRK--GNVVYTPRLDQAGVNGIMRQFC 205 (269)
T ss_dssp SEEEEEBTTSBEEECSSSEEEEEE--TTEEEEECCSSSSBCCHHHHHH
T ss_pred CEEEEECCCCcEEEcCceEEEEEE--CCEEECCCCccCccCCHHHHHH
Confidence 444455899999999999999984 4458888888777665544443
Done!