BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025355
         (254 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P37513|YYAK_BACSU Uncharacterized protein YyaK OS=Bacillus subtilis (strain 168)
           GN=yyaK PE=4 SV=1
          Length = 299

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 10/83 (12%)

Query: 167 SEELLFRGALLPLFGMDWRS----VLAVATVFGALHLGSGRKYSFAVWA-----TFVGFA 217
           +EEL FRG LL  FG   ++     L V  +FG LH  +    + AVWA     TF GF 
Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTF-GFV 217

Query: 218 YGYATIVSKSIVVPMASHALNNL 240
           + Y TI + SI + + +HA NN+
Sbjct: 218 WTYYTIKTGSIEISLGAHAANNM 240


>sp|P50730|YPBD_BACSU Uncharacterized protein YpbD OS=Bacillus subtilis (strain 168)
           GN=ypbD PE=4 SV=1
          Length = 189

 Score = 38.5 bits (88), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 117 TGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGAL 176
             + V+V      ++K +P         N+++ +       + +  L   +EE+LFRG L
Sbjct: 40  VSIAVIVILADMAVMKWFPSHLYDDGGINKKIFSKRSIPHIIFLTLLIAFAEEMLFRGVL 99

Query: 177 LPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHA 236
               G+ W + L    +F ALH     K+   +  T + F  G     + ++ VPM +H 
Sbjct: 100 QTHIGL-WTASL----IFAALHFRYLSKWLLFIMVTAISFLLGLMYEWTGNLFVPMTAHF 154

Query: 237 LNNLV 241
           + + V
Sbjct: 155 IIDAV 159


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
           ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
           Y-1140 / WM37) GN=DBP3 PE=3 SV=1
          Length = 504

 Score = 35.0 bits (79), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 155 LDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFV 214
           LD+  V+F+  I +E+       P+  + W  +LA   V G    GSG+ ++F V A   
Sbjct: 94  LDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINN 153

Query: 215 GFAYGYATIVSKSIVV----PMASHALNNLV 241
               G  +   K +V+     +AS   +NL+
Sbjct: 154 IVTSGDKSSSVKVLVISPTRELASQIYDNLI 184


>sp|Q9YBJ4|PYRG_AERPE CTP synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
           JCM 9820 / NBRC 100138 / K1) GN=pyrG PE=3 SV=1
          Length = 538

 Score = 34.7 bits (78), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 43  SKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQ-GSHVASLEGLPFLDGS 101
           SKE + D +  QT+  IP  ++ +++     G ++   V+I + G  V  +EGLPFL+ +
Sbjct: 102 SKERSGD-YLGQTVQVIPHITDEIKSRIKEVGDVSGADVVIVEIGGTVGDIEGLPFLEAA 160

Query: 102 TEVTFD 107
            ++  +
Sbjct: 161 RQMRLE 166


>sp|Q1WV30|PYRG_LACS1 CTP synthase OS=Lactobacillus salivarius (strain UCC118) GN=pyrG
           PE=3 SV=1
          Length = 532

 Score = 31.6 bits (70), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 44  KESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQ-GSHVASLEGLPFLD 99
           K+    ++   T+  IP  +N+++   +  G IT   V+I + G  V  +E LPFL+
Sbjct: 100 KKERRGDYLGATVQVIPHITNMIKEKIMRAGTITDADVVITEVGGTVGDIESLPFLE 156


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,901,209
Number of Sequences: 539616
Number of extensions: 3436158
Number of successful extensions: 9351
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9342
Number of HSP's gapped (non-prelim): 15
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)