Query 025355
Match_columns 254
No_of_seqs 248 out of 1553
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03008 pepcterm_CAAX CAAX p 99.8 3.8E-17 8.1E-22 142.2 18.1 86 158-250 121-217 (222)
2 PF02517 Abi: CAAX protease se 99.7 2.5E-17 5.4E-22 123.3 10.6 84 155-241 5-91 (91)
3 COG1266 Predicted metal-depend 99.7 1.7E-15 3.6E-20 129.7 16.4 87 154-240 123-212 (226)
4 KOG4130 Prenyl protein proteas 98.9 4.1E-08 8.8E-13 85.5 15.0 85 161-245 135-239 (291)
5 COG4449 Predicted protease of 97.8 1.2E-05 2.6E-10 76.4 2.4 82 157-238 712-809 (827)
6 PF10086 DUF2324: Putative mem 89.2 8.6 0.00019 33.6 11.8 21 227-247 190-210 (223)
7 PF13367 PrsW-protease: Protea 81.9 29 0.00063 29.0 11.5 37 208-244 129-174 (191)
8 PRK11901 hypothetical protein; 52.8 30 0.00066 32.0 5.3 51 30-80 2-53 (327)
9 PHA02758 hypothetical protein; 44.8 55 0.0012 28.8 5.4 26 220-245 266-291 (321)
10 PF10766 DUF2592: Protein of u 43.4 37 0.0008 21.5 3.0 26 189-221 2-27 (41)
11 COG2339 prsW Membrane proteina 33.4 3.7E+02 0.008 24.4 15.2 33 209-241 188-228 (274)
12 PF04142 Nuc_sug_transp: Nucle 27.6 3.8E+02 0.0082 23.5 8.1 73 161-233 126-213 (244)
13 PF06781 UPF0233: Uncharacteri 26.8 2.7E+02 0.0059 20.7 7.8 13 72-84 36-48 (87)
14 PF09512 ThiW: Thiamine-precur 26.3 3.6E+02 0.0079 22.2 7.1 18 218-235 79-96 (150)
15 PRK13661 hypothetical protein; 26.1 3.8E+02 0.0082 22.7 7.5 38 206-243 78-124 (182)
16 PRK11677 hypothetical protein; 24.4 97 0.0021 25.0 3.4 21 205-225 3-23 (134)
17 PF07185 DUF1404: Protein of u 23.6 4.4E+02 0.0096 22.1 7.7 90 157-246 5-122 (169)
18 PRK00247 putative inner membra 22.5 1.2E+02 0.0026 29.3 4.1 14 25-38 387-400 (429)
19 TIGR02359 thiW thiW protein. L 22.2 4.6E+02 0.0099 21.7 8.8 32 210-241 74-105 (160)
20 KOG4753 Predicted membrane pro 22.1 2.9E+02 0.0064 21.9 5.5 8 22-29 3-10 (124)
21 COG4317 Uncharacterized protei 21.6 2.5E+02 0.0054 20.8 4.7 37 185-222 9-45 (93)
No 1
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.76 E-value=3.8e-17 Score=142.22 Aligned_cols=86 Identities=29% Similarity=0.389 Sum_probs=74.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcC
Q 025355 158 LVVAFLPGISEELLFRGALLPLFGM-----------DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSK 226 (254)
Q Consensus 158 l~~~i~~~i~EEllFRG~L~~~l~~-----------~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tg 226 (254)
+..+++.|+.||++|||++++.+.+ .|.++++||++||+.|.. .+.+++.|+++|++|.|||
T Consensus 121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-------~~~~~l~Gli~~~l~~~tg 193 (222)
T TIGR03008 121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-------IVAGLIAGLAYNLLLLRTG 193 (222)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhC
Confidence 4446888999999999999999843 477999999999999974 3457788999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHccC
Q 025355 227 SIVVPMASHALNNLVGGILWSYTS 250 (254)
Q Consensus 227 sL~~~I~~H~~~N~~~~ll~~~~~ 250 (254)
|++.+|++|+++|.+..+....++
T Consensus 194 sL~~~I~~H~~~N~ll~~~vl~~~ 217 (222)
T TIGR03008 194 SIMACILAHAVTNGLLGLWVLLTG 217 (222)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999877765554
No 2
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.73 E-value=2.5e-17 Score=123.33 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=74.5
Q ss_pred chHHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 025355 155 LDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVP 231 (254)
Q Consensus 155 ~~~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tgsL~~~ 231 (254)
...+...+.+|+.||++|||++++.+.+ ++.++++|+++|++.|... .+. ++..++.|++++++|.||||+|++
T Consensus 5 ~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~--~~~-~~~~~~~g~~~~~~~~~t~sl~~~ 81 (91)
T PF02517_consen 5 IFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPN--GPQ-FIYAFLFGLLFGYLYLRTGSLWAA 81 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHcCChHHH
Confidence 3456667899999999999999999866 4789999999999999986 344 788999999999999999999999
Q ss_pred HHHHHHHHHH
Q 025355 232 MASHALNNLV 241 (254)
Q Consensus 232 I~~H~~~N~~ 241 (254)
+++|+++|.+
T Consensus 82 i~~H~~~n~~ 91 (91)
T PF02517_consen 82 IIAHALWNLV 91 (91)
T ss_pred HHHHHHHHcC
Confidence 9999999973
No 3
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.68 E-value=1.7e-15 Score=129.67 Aligned_cols=87 Identities=32% Similarity=0.466 Sum_probs=76.8
Q ss_pred cchHHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 025355 154 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV 230 (254)
Q Consensus 154 ~~~~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tgsL~~ 230 (254)
...++...+.+|+.||++|||++++.+.+ .+.++++||++||+.|..+...+..++.++.+|++++++|.||||++.
T Consensus 123 ~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~ 202 (226)
T COG1266 123 LLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 34456667889999999999999999876 467999999999999998753257788899999999999999999999
Q ss_pred HHHHHHHHHH
Q 025355 231 PMASHALNNL 240 (254)
Q Consensus 231 ~I~~H~~~N~ 240 (254)
++..|+++|.
T Consensus 203 ~i~~H~~~N~ 212 (226)
T COG1266 203 PILLHALINL 212 (226)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.1e-08 Score=85.45 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=70.8
Q ss_pred HHhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhhcCcc----------------hHHHHHHHHHHHHHHHH
Q 025355 161 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVFGALHLGSGR----------------KYSFAVWATFVGFAYGY 220 (254)
Q Consensus 161 ~i~~~i~EEllFRG~L~~~l~~----~~~ailiSsllF~l~H~~~~~----------------~~~~~l~~~~~Gli~g~ 220 (254)
-+++|+.||++||.++++...+ ...++...-++||..|.+..- .-.++.|+.+.|..-+.
T Consensus 135 ~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaf 214 (291)
T KOG4130|consen 135 FIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAF 214 (291)
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999998754 456789999999999976310 22457788899999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHH
Q 025355 221 ATIVSKSIVVPMASHALNNLVGGIL 245 (254)
Q Consensus 221 ~y~~tgsL~~~I~~H~~~N~~~~ll 245 (254)
++.|||++|.+|++|+..|...+--
T Consensus 215 lF~rTghl~~~iLvHAfCN~MGfP~ 239 (291)
T KOG4130|consen 215 LFVRTGHLWCPILVHAFCNIMGFPN 239 (291)
T ss_pred HhhhcCCchHHHHHHHHHhhcCChh
Confidence 9999999999999999999876543
No 5
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=97.78 E-value=1.2e-05 Score=76.44 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=63.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhh---hHHHHHHHHH--HHHHHhhcCcc-----------hHHHHHHHHHHHHHHHH
Q 025355 157 YLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVAT--VFGALHLGSGR-----------KYSFAVWATFVGFAYGY 220 (254)
Q Consensus 157 ~l~~~i~~~i~EEllFRG~L~~~l~~---~~~ailiSsl--lF~l~H~~~~~-----------~~~~~l~~~~~Gli~g~ 220 (254)
++-+.+.+++.||++||..+.+.=+. +|..+-.... +|.++|.-+.. .+.+++.+.++|+-|+.
T Consensus 712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv 791 (827)
T COG4449 712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV 791 (827)
T ss_pred hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence 34556789999999999999987533 6765544444 89999964321 33566778899999999
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 025355 221 ATIVSKSIVVPMASHALN 238 (254)
Q Consensus 221 ~y~~tgsL~~~I~~H~~~ 238 (254)
.|..|+|+|+.+++|.+.
T Consensus 792 ty~vT~SlW~iV~lHW~v 809 (827)
T COG4449 792 TYRVTGSLWPIVLLHWAV 809 (827)
T ss_pred hHHhccchHHHHHHHHHH
Confidence 999999999999999764
No 6
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=89.23 E-value=8.6 Score=33.64 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 025355 227 SIVVPMASHALNNLVGGILWS 247 (254)
Q Consensus 227 sL~~~I~~H~~~N~~~~ll~~ 247 (254)
-+..+|++|++.|..+.+...
T Consensus 190 ~l~~AIllHaliD~~aal~q~ 210 (223)
T PF10086_consen 190 YLVLAILLHALIDFPAALYQA 210 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999998766643
No 7
>PF13367 PrsW-protease: Protease prsW family
Probab=81.90 E-value=29 Score=28.99 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHH
Q 025355 208 AVWATFVGFAYGYATIVS---------KSIVVPMASHALNNLVGGI 244 (254)
Q Consensus 208 ~l~~~~~Gli~g~~y~~t---------gsL~~~I~~H~~~N~~~~l 244 (254)
..+..++|..+++...+. ..+..++..|++||.....
T Consensus 129 ~~~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 129 ALFTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445666777777766332 2467889999999998766
No 8
>PRK11901 hypothetical protein; Reviewed
Probab=52.81 E-value=30 Score=32.01 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=31.4
Q ss_pred cccCCCccccccCCCCCCCCcccc-ccccCcchHHHHHHHHHHHHHHHHHHH
Q 025355 30 DRSGTEDDYVKDESKESTDDNFTS-QTLVTIPSRSNVLQACTVTCGLITALG 80 (254)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~~~t~~~ll~l~ 80 (254)
|||..|+..-++-.|-.......+ +......+|..++..+++..++||++|
T Consensus 2 DEfkpe~elkPDtSDRrp~Rsr~~~~~pk~~vSRQh~MiGiGilVLlLLIi~ 53 (327)
T PRK11901 2 DEFKPEDELKPDTSDRRPTRSRKSSNGPKLAVSRQHMMIGIGILVLLLLIIA 53 (327)
T ss_pred CcCCcccccCCCcccCCCcccccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344545554444444444433322 223457789999999998888888887
No 9
>PHA02758 hypothetical protein; Provisional
Probab=44.75 E-value=55 Score=28.82 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHH
Q 025355 220 YATIVSKSIVVPMASHALNNLVGGIL 245 (254)
Q Consensus 220 ~~y~~tgsL~~~I~~H~~~N~~~~ll 245 (254)
|-.++.+.+..+|+-|+.+|..+..+
T Consensus 266 w~iyke~giiasiighafynagvsaf 291 (321)
T PHA02758 266 WEIYKEGGIIASIIGHAFYNAGVSAF 291 (321)
T ss_pred HHHHhcCCchhhhhhHHHHHhHHHHH
Confidence 33456789999999999999877554
No 10
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=43.36 E-value=37 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Q 025355 189 AVATVFGALHLGSGRKYSFAVWATFVGFAYGYA 221 (254)
Q Consensus 189 iSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~ 221 (254)
+-|+.|++.-.+ ++++.++|+++|.-
T Consensus 2 lkSl~fa~iMVP-------Vvma~ilglIyGlG 27 (41)
T PF10766_consen 2 LKSLAFAVIMVP-------VVMALILGLIYGLG 27 (41)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 346778887765 35567788887764
No 11
>COG2339 prsW Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=3.7e+02 Score=24.37 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHh--------cCCcHHHHHHHHHHHHH
Q 025355 209 VWATFVGFAYGYATIV--------SKSIVVPMASHALNNLV 241 (254)
Q Consensus 209 l~~~~~Gli~g~~y~~--------tgsL~~~I~~H~~~N~~ 241 (254)
++..+.|..++..... -.-+..+.+.|++||+.
T Consensus 188 ~~s~i~Gy~LglA~~~~~~~~~~~~~w~~~al~LH~lwnt~ 228 (274)
T COG2339 188 LLSAIVGYYLGLAAFGQDKAKGIRIKWLLLALLLHFLWNTP 228 (274)
T ss_pred HHHHHHHHHHHHHHhchhhhccHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555441 12267789999999943
No 12
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=27.60 E-value=3.8e+02 Score=23.49 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHhhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHH-----------HHHhhcCcchHHHHHHHHHHHHHHHHHHHhc
Q 025355 161 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVF-----------GALHLGSGRKYSFAVWATFVGFAYGYATIVS 225 (254)
Q Consensus 161 ~i~~~i~EEllFRG~L~~~l~~----~~~ailiSsllF-----------~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~t 225 (254)
+-++++.||-+...-=.+..-+ ...+++.+.+.. |+.|.+....|..+....+.|++.+++..+.
T Consensus 126 S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~Kya 205 (244)
T PF04142_consen 126 SGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYA 205 (244)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3567889999887654332221 122233332221 1223332224455556667899999999998
Q ss_pred CCcHHHHH
Q 025355 226 KSIVVPMA 233 (254)
Q Consensus 226 gsL~~~I~ 233 (254)
+|+.-...
T Consensus 206 dnI~K~fa 213 (244)
T PF04142_consen 206 DNIVKGFA 213 (244)
T ss_pred hHHHHHHH
Confidence 88865544
No 13
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=26.79 E-value=2.7e+02 Score=20.74 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 025355 72 TCGLITALGVIIR 84 (254)
Q Consensus 72 t~~~ll~l~l~l~ 84 (254)
+.+.++++|++..
T Consensus 36 ~m~~lmllGL~Wi 48 (87)
T PF06781_consen 36 LMLGLMLLGLLWI 48 (87)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566664433
No 14
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=26.26 E-value=3.6e+02 Score=22.20 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=8.2
Q ss_pred HHHHHHhcCCcHHHHHHH
Q 025355 218 YGYATIVSKSIVVPMASH 235 (254)
Q Consensus 218 ~g~~y~~tgsL~~~I~~H 235 (254)
.|++|.+++++|.+.+-.
T Consensus 79 aGllyr~~~k~~~a~lGE 96 (150)
T PF09512_consen 79 AGLLYRKTKKLWAAALGE 96 (150)
T ss_pred HHHHHHHhCcchHHHHHH
Confidence 344445555544444433
No 15
>PRK13661 hypothetical protein; Provisional
Probab=26.08 E-value=3.8e+02 Score=22.66 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHH
Q 025355 206 SFAVWATFVGFAYGYATIV---------SKSIVVPMASHALNNLVGG 243 (254)
Q Consensus 206 ~~~l~~~~~Gli~g~~y~~---------tgsL~~~I~~H~~~N~~~~ 243 (254)
...+..++.|++.|+.+.+ .++++.-.+.-.+.|.+.+
T Consensus 78 ~~ti~~gl~G~i~Gl~~~~~~~~~g~~~~k~~~~f~i~~~i~n~i~~ 124 (182)
T PRK13661 78 TWVLASGIIGLIIGLFKKRLRLENGVFSKKDIVYFNIVQIIANVIAW 124 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH
Confidence 4456788899999988765 2556777777777787654
No 16
>PRK11677 hypothetical protein; Provisional
Probab=24.36 E-value=97 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 025355 205 YSFAVWATFVGFAYGYATIVS 225 (254)
Q Consensus 205 ~~~~l~~~~~Gli~g~~y~~t 225 (254)
|...+..+++|++.|++..|.
T Consensus 3 W~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 567777889999999998874
No 17
>PF07185 DUF1404: Protein of unknown function (DUF1404); InterPro: IPR009844 This family consists of several archaeal proteins of around 180 residues in length. Members of this family seem to be found exclusively in Sulfolobus tokodaii and Sulfolobus solfataricus. The function of this family is unknown.
Probab=23.60 E-value=4.4e+02 Score=22.11 Aligned_cols=90 Identities=17% Similarity=0.045 Sum_probs=48.7
Q ss_pred HHHHHHhhHHHHHHHHH---------------HHHHHhh--hhhHHHHHHHHHHHHHHhhcCcc---------hHHHHHH
Q 025355 157 YLVVAFLPGISEELLFR---------------GALLPLF--GMDWRSVLAVATVFGALHLGSGR---------KYSFAVW 210 (254)
Q Consensus 157 ~l~~~i~~~i~EEllFR---------------G~L~~~l--~~~~~ailiSsllF~l~H~~~~~---------~~~~~l~ 210 (254)
.+.+..++|+.||+-++ |.+.+.. +.++...++.+++=.++|.+..- ....-+.
T Consensus 5 ~l~i~~vNP~te~l~~~~~~~~M~sHY~L~~~g~llgy~~~k~~~~~~i~g~~~~v~WhlP~~F~l~a~~~~~Rii~elS 84 (169)
T PF07185_consen 5 FLIIASVNPFTESLEFYNPIAYMLSHYALFWGGFLLGYKLFKGKIIFLILGIIPAVFWHLPYFFDLSASSLWYRIIDELS 84 (169)
T ss_pred HHHHHHhhhhHHHHhccChHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888665 3333321 22444577888888899987521 1112233
Q ss_pred HHHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHH
Q 025355 211 ATFVGFAYGYATIVSKSIVV--PMASHALNNLVGGILW 246 (254)
Q Consensus 211 ~~~~Gli~g~~y~~tgsL~~--~I~~H~~~N~~~~ll~ 246 (254)
.++.|++.|.....-+..+- -...-++-|....+++
T Consensus 85 l~lgGiL~Gss~~~m~~~~Ki~Lf~lwM~gDT~lsi~l 122 (169)
T PF07185_consen 85 LFLGGILIGSSIPSMSFVFKITLFALWMIGDTVLSIIL 122 (169)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567776666555443333 1223334455544443
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.52 E-value=1.2e+02 Score=29.35 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=8.1
Q ss_pred CCccccccCCCccc
Q 025355 25 GNGVADRSGTEDDY 38 (254)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (254)
.+|+++.++++++.
T Consensus 387 ~~~~~~~~~~~~s~ 400 (429)
T PRK00247 387 KKGLIDASPNEDTP 400 (429)
T ss_pred hcccccccCCCCcc
Confidence 56666666555533
No 19
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=22.15 E-value=4.6e+02 Score=21.70 Aligned_cols=32 Identities=6% Similarity=-0.125 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 025355 210 WATFVGFAYGYATIVSKSIVVPMASHALNNLV 241 (254)
Q Consensus 210 ~~~~~Gli~g~~y~~tgsL~~~I~~H~~~N~~ 241 (254)
...+.+++.|++|.++++.+.++....+--.+
T Consensus 74 g~~~~a~laGliyrk~~~~~~a~~ge~igt~i 105 (160)
T TIGR02359 74 GGMPGALLAGLLYRFGRKHYWASLGEILGTGI 105 (160)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 34456777777777777776665555544433
No 20
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=22.14 E-value=2.9e+02 Score=21.87 Aligned_cols=8 Identities=38% Similarity=0.626 Sum_probs=4.6
Q ss_pred hhcCCccc
Q 025355 22 AEKGNGVA 29 (254)
Q Consensus 22 ~~~~~~~~ 29 (254)
+|.|+|..
T Consensus 3 p~rdv~~~ 10 (124)
T KOG4753|consen 3 PERDVGVG 10 (124)
T ss_pred CcCcCcee
Confidence 45566665
No 21
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=2.5e+02 Score=20.83 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Q 025355 185 RSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYAT 222 (254)
Q Consensus 185 ~ailiSsllF~l~H~~~~~~~~~~l~~~~~Gli~g~~y 222 (254)
.+-++..++|+++|...+..+ .+....++|+..|+-.
T Consensus 9 gAGllVGiiyaLl~vrsPAPP-~iAlvGllGilvGeq~ 45 (93)
T COG4317 9 GAGLLVGIIYALLKVRSPAPP-AIALVGLLGILVGEQI 45 (93)
T ss_pred hhhHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHHHHH
Confidence 345778899999999865433 3334667888887643
Done!