Query 025355
Match_columns 254
No_of_seqs 248 out of 1553
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmu_A ATP-dependent DNA helic 10.6 1.3E+02 0.0045 19.5 1.8 14 7-20 10-23 (56)
2 3ul0_C Nuclear CAP-binding pro 9.2 1.4E+02 0.0047 16.0 1.2 8 22-29 10-17 (26)
3 3p5n_A RIBU, riboflavin uptake 8.7 7.1E+02 0.024 19.4 8.2 16 213-228 94-109 (189)
4 1dc1_A Bsobi restriction endon 8.1 1.9E+02 0.0064 25.1 2.3 15 165-179 109-123 (323)
5 2c7h_A RBBP6, retinoblastoma-b 8.0 1.7E+02 0.006 20.7 1.8 37 9-45 30-66 (86)
6 3arc_L Photosystem II reaction 7.1 1.4E+02 0.0047 17.7 0.7 12 41-52 4-15 (37)
7 3dcg_E Virion infectivity fact 6.9 1.2E+02 0.0041 18.2 0.4 9 9-17 28-36 (39)
8 4b1v_M Phosphatase and actin r 5.4 1E+02 0.0035 17.5 -0.5 10 168-177 19-28 (32)
9 2knc_B Integrin beta-3; transm 4.7 4.1E+02 0.014 18.2 2.1 28 6-33 40-68 (79)
10 3rlb_A THIT; S-component, ECF 4.4 1E+03 0.035 18.9 4.7 6 193-198 72-77 (192)
No 1
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=10.58 E-value=1.3e+02 Score=19.51 Aligned_cols=14 Identities=7% Similarity=0.219 Sum_probs=12.1
Q ss_pred hhhhhhhhHHHHhh
Q 025355 7 KKSVKKLKRDRQLR 20 (254)
Q Consensus 7 ~~~~~~~~~~~~~~ 20 (254)
|.-+|.|+++|+..
T Consensus 10 k~~LK~WE~~F~~~ 23 (56)
T 2kmu_A 10 RERLQAWERAFRRQ 23 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45789999999987
No 2
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=9.19 E-value=1.4e+02 Score=15.96 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=6.3
Q ss_pred hhcCCccc
Q 025355 22 AEKGNGVA 29 (254)
Q Consensus 22 ~~~~~~~~ 29 (254)
.|.|+||+
T Consensus 10 dendggq~ 17 (26)
T 3ul0_C 10 DENDGGQP 17 (26)
T ss_dssp TSCSSCCC
T ss_pred cccCCCCc
Confidence 46788988
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=8.70 E-value=7.1e+02 Score=19.43 Aligned_cols=16 Identities=6% Similarity=-0.319 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhcCCc
Q 025355 213 FVGFAYGYATIVSKSI 228 (254)
Q Consensus 213 ~~Gli~g~~y~~tgsL 228 (254)
..|+..+++|.+.++.
T Consensus 94 ~~g~~~~~~y~k~~~~ 109 (189)
T 3p5n_A 94 SFLLTAYAIYKNKRST 109 (189)
T ss_dssp HHHHHHHHHHSSSCSH
T ss_pred HHHHHHHHHHHhcccH
Confidence 3444445555554443
No 4
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=8.09 E-value=1.9e+02 Score=25.11 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHh
Q 025355 165 GISEELLFRGALLPL 179 (254)
Q Consensus 165 ~i~EEllFRG~L~~~ 179 (254)
-++||++||-.|...
T Consensus 109 ~FVdELv~RfLLtrG 123 (323)
T 1dc1_A 109 EFIDELIFRYLLFQG 123 (323)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 468999999888763
No 5
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=8.02 E-value=1.7e+02 Score=20.66 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=24.9
Q ss_pred hhhhhhHHHHhhhhhcCCccccccCCCccccccCCCC
Q 025355 9 SVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKE 45 (254)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (254)
||.+|||+--.+..-++.-.|+.-...|.+||=.||.
T Consensus 30 sv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~ 66 (86)
T 2c7h_A 30 SLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN 66 (86)
T ss_dssp EHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT
T ss_pred EHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc
Confidence 7889999877664333333456777777777777664
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.09 E-value=1.4e+02 Score=17.68 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=8.3
Q ss_pred cCCCCCCCCccc
Q 025355 41 DESKESTDDNFT 52 (254)
Q Consensus 41 ~~~~~~~~~~~~ 52 (254)
+|++|++++|.+
T Consensus 4 Npn~q~VELNRT 15 (37)
T 3arc_L 4 NPNRQPVELNRT 15 (37)
T ss_dssp CTTCCCBCCCHH
T ss_pred CCCCCcceechh
Confidence 677787776643
No 7
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=6.94 E-value=1.2e+02 Score=18.23 Aligned_cols=9 Identities=67% Similarity=0.940 Sum_probs=7.6
Q ss_pred hhhhhhHHH
Q 025355 9 SVKKLKRDR 17 (254)
Q Consensus 9 ~~~~~~~~~ 17 (254)
||+|+..|+
T Consensus 28 Sv~kLtEDr 36 (39)
T 3dcg_E 28 SVRKLTEDR 36 (39)
T ss_pred hhhHHhhcc
Confidence 889998886
No 8
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=5.43 E-value=1e+02 Score=17.50 Aligned_cols=10 Identities=60% Similarity=0.800 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 025355 168 EELLFRGALL 177 (254)
Q Consensus 168 EEllFRG~L~ 177 (254)
||++=||++.
T Consensus 19 eelikrgvlk 28 (32)
T 4b1v_M 19 EELIKRGVLK 28 (32)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHhhhhh
Confidence 7777777653
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.69 E-value=4.1e+02 Score=18.19 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=18.4
Q ss_pred chhhhhhhhHHHHhhhhhc-CCccccccC
Q 025355 6 SKKSVKKLKRDRQLRLAEK-GNGVADRSG 33 (254)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 33 (254)
.|+-.+|-++++|..+.++ +|-+--..+
T Consensus 40 DrrE~~kFEkE~~~~~w~~~~NPlyk~~t 68 (79)
T 2knc_B 40 DRKEFAKFEEERARAKWDTANNPLYKEAT 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHCS
T ss_pred HHHHHHHHHHHHHhcccccCCCCCccCCc
Confidence 4677888899999887654 344443333
No 10
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=4.37 E-value=1e+03 Score=18.92 Aligned_cols=6 Identities=33% Similarity=0.905 Sum_probs=2.5
Q ss_pred HHHHHh
Q 025355 193 VFGALH 198 (254)
Q Consensus 193 lF~l~H 198 (254)
++|+.|
T Consensus 72 i~gll~ 77 (192)
T 3rlb_A 72 IWGILS 77 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
Done!