Query 025355
Match_columns 254
No_of_seqs 248 out of 1553
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 08:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dc1a_ c.52.1.11 (A:) Restric 9.4 72 0.0052 25.6 2.3 15 165-179 105-119 (319)
2 d1ppjd2 f.23.11.1 (D:196-241) 7.9 1E+02 0.0073 17.7 1.9 22 211-232 14-35 (46)
3 d2csba3 a.60.2.4 (A:410-464) T 6.7 60 0.0044 18.7 0.5 22 2-23 20-41 (55)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.6 5E+02 0.036 19.7 6.5 34 193-226 16-49 (248)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 6.2 2.2E+02 0.016 15.2 4.0 13 40-52 3-15 (37)
6 d1q90m_ f.23.25.1 (M:) PetM su 3.5 3.5E+02 0.025 13.9 2.9 18 208-225 12-29 (34)
7 d1zela1 a.4.5.83 (A:1-82) Hypo 3.0 1.7E+02 0.013 17.9 0.6 21 9-29 27-47 (82)
8 d1jb0i_ f.23.17.1 (I:) Subunit 2.7 4.8E+02 0.035 13.9 2.2 12 209-220 22-33 (38)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 2.6 7.3E+02 0.053 16.9 3.8 8 172-179 22-29 (130)
10 d1y0na_ d.291.1.1 (A:) Hypothe 2.6 2.4E+02 0.018 17.8 1.0 12 162-173 14-25 (78)
No 1
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.40 E-value=72 Score=25.60 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHh
Q 025355 165 GISEELLFRGALLPL 179 (254)
Q Consensus 165 ~i~EEllFRG~L~~~ 179 (254)
-++||++||-.|...
T Consensus 105 ~fieElv~RfLLtrG 119 (319)
T d1dc1a_ 105 EFIDELIFRYLLFQG 119 (319)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 468999999887763
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.89 E-value=1e+02 Score=17.72 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCCcHHHH
Q 025355 211 ATFVGFAYGYATIVSKSIVVPM 232 (254)
Q Consensus 211 ~~~~Gli~g~~y~~tgsL~~~I 232 (254)
.++++++.+..|+..+..|.++
T Consensus 14 ~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 4456666677777666777654
No 3
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=6.75 E-value=60 Score=18.74 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.7
Q ss_pred ccccchhhhhhhhHHHHhhhhh
Q 025355 2 RTFASKKSVKKLKRDRQLRLAE 23 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (254)
|+|.....||.+.|++.-++-.
T Consensus 20 rafgnpervkqlarefeiekla 41 (55)
T d2csba3 20 RAFGNPERVKQLAREFEIEKLA 41 (55)
T ss_dssp HHHSSHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHH
Confidence 6777777888888888777543
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=5e+02 Score=19.65 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=14.4
Q ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcC
Q 025355 193 VFGALHLGSGRKYSFAVWATFVGFAYGYATIVSK 226 (254)
Q Consensus 193 lF~l~H~~~~~~~~~~l~~~~~Gli~g~~y~~tg 226 (254)
+|+...+.....|...+..++..++.-|+|...+
T Consensus 16 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r 49 (248)
T d2r6gf1 16 GYLVVLMYAQGEYLFAITTLILSSAGLYIFANRK 49 (248)
T ss_dssp HHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHheEEEEEccC
Confidence 3444444333333444444444444445554433
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.25 E-value=2.2e+02 Score=15.22 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=8.8
Q ss_pred ccCCCCCCCCccc
Q 025355 40 KDESKESTDDNFT 52 (254)
Q Consensus 40 ~~~~~~~~~~~~~ 52 (254)
++|++|.+++|.+
T Consensus 3 pnpn~q~veLNrt 15 (37)
T d2axtl1 3 PNPNRQPVELNRT 15 (37)
T ss_dssp CCSSCCCBCCCHH
T ss_pred CCCCCCccccchh
Confidence 5677777776643
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.54 E-value=3.5e+02 Score=13.91 Aligned_cols=18 Identities=33% Similarity=0.491 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 025355 208 AVWATFVGFAYGYATIVS 225 (254)
Q Consensus 208 ~l~~~~~Gli~g~~y~~t 225 (254)
++...++|+..|++.+|-
T Consensus 12 mig~tl~glaigfvllrv 29 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheee
Confidence 455667888888877763
No 7
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.04 E-value=1.7e+02 Score=17.93 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=14.2
Q ss_pred hhhhhhHHHHhhhhhcCCccc
Q 025355 9 SVKKLKRDRQLRLAEKGNGVA 29 (254)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (254)
+|---|.|--+|+.|+|-|-|
T Consensus 27 pvvvtkedltqrlteagcgrd 47 (82)
T d1zela1 27 PVVVTKEDLTQRLTEAGCGRD 47 (82)
T ss_dssp CSSEEHHHHHHHHHHTTCCCC
T ss_pred ceEEeHHHHHHHHHhcccCCC
Confidence 343445566778888888866
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.68 E-value=4.8e+02 Score=13.87 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 025355 209 VWATFVGFAYGY 220 (254)
Q Consensus 209 l~~~~~Gli~g~ 220 (254)
.++.+||+.|-|
T Consensus 22 ~p~vvMglLFiy 33 (38)
T d1jb0i_ 22 MPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhee
Confidence 345566666654
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.61 E-value=7.3e+02 Score=16.90 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 025355 172 FRGALLPL 179 (254)
Q Consensus 172 FRG~L~~~ 179 (254)
||.|+++.
T Consensus 22 Yr~YMlRE 29 (130)
T d1kf6c_ 22 YRFYMLRE 29 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 10
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.60 E-value=2.4e+02 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHH
Q 025355 162 FLPGISEELLFR 173 (254)
Q Consensus 162 i~~~i~EEllFR 173 (254)
.+-++.||++.|
T Consensus 14 tL~~lIeeFv~R 25 (78)
T d1y0na_ 14 TLNNLLEDFVTR 25 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 345788999988
Done!