BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025356
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O78424|YCF19_GUITH Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3
SV=1
Length = 91
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 149 RLVLTWFPN----SPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAITS 204
R+ LTWFPN P LS + DPYL +FRGI+PPL G +D+SPIL F++L I
Sbjct: 26 RVSLTWFPNVNWYGQP--FYSLSRITDPYLKMFRGIVPPLIG-IDISPILGFILLQCIMQ 82
Query: 205 AAA 207
+
Sbjct: 83 IVS 85
>sp|O31729|YLMG_BACSU Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain
168) GN=ylmG PE=3 SV=1
Length = 90
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 139 LNIYNTLLIVRLVLTWFPNS-PPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFL 197
+ IY+ LI+ + ++W P++ A+ L+++C+PYL FR IIPP+ LD+SPI+A L
Sbjct: 14 ITIYSFALIIYIFMSWVPSTRETAVGRFLASICEPYLEPFRKIIPPI-AMLDISPIVAIL 72
Query: 198 VLNAITSAAAAL 209
VL T+ L
Sbjct: 73 VLRFATTGLWGL 84
>sp|Q9TM45|YCF19_CYACA Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3
SV=1
Length = 91
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 127 GGLVVANGIMSFLNIYNTLLIVRLVLTWFPN----SPPAIVSPLSTLCDPYLNIFRGIIP 182
G ++ ++FL IY L+++R+ L WFPN S P LS L DPYLN+F G+ P
Sbjct: 4 GTDLILETTIAFLQIYIVLILLRMSLGWFPNINWYSQP--FYSLSQLSDPYLNLFHGVFP 61
Query: 183 PLGGTLDLSPILAFLVLNAITS 204
G +D SPI+ +++ I
Sbjct: 62 SFLG-IDFSPIIGITLIDFIIE 82
>sp|P25254|Y392_PSEAE Uncharacterized protein PA0392 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0392
PE=3 SV=2
Length = 197
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 123 GDSVGGLVVANGIMS-------FLNIYNTLLIVRLVLTWF-PNSPPAIVSPLSTLCDPYL 174
G VGG ++ I S FL ++ LI+ ++L+W P S ++ +C+P L
Sbjct: 89 GYGVGGFIMQLLIWSIIAVTSLFLKVFFFALIISVILSWVAPGSYNPGAQLVNQICEPLL 148
Query: 175 NIFRGIIPPLGGTLDLSPILAFLVLNAI-------TSAAAALPCELPV 215
FR ++P LGG LDLSPI AFL L I +A +P +L +
Sbjct: 149 MPFRKLLPNLGG-LDLSPIFAFLALKLIDMLVINNLAAMTGMPQQLSI 195
>sp|P28255|YCF19_GALSU Uncharacterized protein ycf19 OS=Galdieria sulphuraria GN=ycf19
PE=3 SV=1
Length = 98
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 130 VVANGIMSFLNIYNTLLIVRLVLTWFPN----SPPAIVSPLSTLCDPYLNIFRGIIPPLG 185
++ I F IY L +R+ L W + P IV L L DPYLN+FRG +P +
Sbjct: 12 IILGVITEFCRIYLFALSIRVFLAWIVTINWYTQPYIV--LKKLTDPYLNLFRGTLPLIL 69
Query: 186 GTLDLSPILAFLVLNAITSAAAALPCEL 213
G +D S +L FL L + ++ E+
Sbjct: 70 G-MDFSSMLGFLFLECVIKLLESIYIEI 96
>sp|Q1XDD4|YCF19_PORYE Uncharacterized protein ycf19 OS=Porphyra yezoensis GN=ycf19 PE=3
SV=1
Length = 95
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 154 WFP-----NSPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAI 202
WFP N P L+ + DPYL +FRG IPP+ G +D+SP+L + L +
Sbjct: 34 WFPTVNWYNEP---FCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCL 83
>sp|P51353|YCF19_PORPU Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3
SV=1
Length = 95
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 154 WFP-----NSPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAI 202
WFP N P L+ + DPYL +FRG IPP+ G +D+SP+L + L +
Sbjct: 34 WFPTVNWYNEP---FCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLGIIFLQCL 83
>sp|Q08353|IKBA_PIG NF-kappa-B inhibitor alpha OS=Sus scrofa GN=NFKBIA PE=2 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 133 NGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIP 182
G ++FLN N L L L N P + L CDP L FRG P
Sbjct: 98 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTP 147
>sp|P25963|IKBA_HUMAN NF-kappa-B inhibitor alpha OS=Homo sapiens GN=NFKBIA PE=1 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 133 NGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIP 182
G ++FLN N L L L N P + L CDP L FRG P
Sbjct: 98 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 147
>sp|Q63746|IKBA_RAT NF-kappa-B inhibitor alpha OS=Rattus norvegicus GN=Nfkbia PE=2 SV=1
Length = 314
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 133 NGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIP 182
G ++FLN N L L L N P + L CDP L FRG P
Sbjct: 98 KGDLAFLNFQNNLQQTPLHLAVITNQPGIAEALLKAGCDPELRDFRGNTP 147
>sp|Q9Z1E3|IKBA_MOUSE NF-kappa-B inhibitor alpha OS=Mus musculus GN=Nfkbia PE=1 SV=2
Length = 314
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 133 NGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGIIP 182
G ++FLN N L L L N P + L CDP L FRG P
Sbjct: 98 KGDLAFLNFQNNLQQTPLHLAVITNQPGIAEALLKAGCDPELRDFRGNTP 147
>sp|P64564|YGGT_ECOLI Uncharacterized protein YggT OS=Escherichia coli (strain K12)
GN=yggT PE=3 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 121 LPGDSVGGLVVANGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGI 180
LP + GL++ + L + +L+V +++W I L L DP L R +
Sbjct: 87 LPIIWIAGLLILLKTIGLLIFW--VLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRL 144
Query: 181 IPPLGGTLDLSPILAFLVLNAITSAAA 207
+P +GG +D SP++ L+L I A
Sbjct: 145 LPAMGG-IDFSPMILVLLLYVINMGVA 170
>sp|P64565|YGGT_ECOL6 Uncharacterized protein YggT OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yggT PE=3 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 121 LPGDSVGGLVVANGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGI 180
LP + GL++ + L + +L+V +++W I L L DP L R +
Sbjct: 87 LPIIWIAGLLILLKTIGLLIFW--VLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRL 144
Query: 181 IPPLGGTLDLSPILAFLVLNAITSAAA 207
+P +GG +D SP++ L+L I A
Sbjct: 145 LPAMGG-IDFSPMILVLLLYVINMGVA 170
>sp|P64566|YGGT_ECO57 Uncharacterized protein YggT OS=Escherichia coli O157:H7 GN=yggT
PE=3 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 121 LPGDSVGGLVVANGIMSFLNIYNTLLIVRLVLTWFPNSPPAIVSPLSTLCDPYLNIFRGI 180
LP + GL++ + L + +L+V +++W I L L DP L R +
Sbjct: 87 LPIIWIAGLLILLKTIGLLIFW--VLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRL 144
Query: 181 IPPLGGTLDLSPILAFLVLNAITSAAA 207
+P +GG +D SP++ L+L I A
Sbjct: 145 LPAMGG-IDFSPMILVLLLYVINMGVA 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,526,615
Number of Sequences: 539616
Number of extensions: 3425260
Number of successful extensions: 8644
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8626
Number of HSP's gapped (non-prelim): 26
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)