Query 025356
Match_columns 254
No_of_seqs 257 out of 1132
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02325 YGGT: YGGT family; I 99.8 5.7E-19 1.2E-23 132.2 8.4 73 135-208 1-74 (75)
2 COG0762 Predicted integral mem 99.7 1.6E-16 3.4E-21 125.4 9.9 75 134-209 13-89 (96)
3 PF02325 YGGT: YGGT family; I 98.8 5E-09 1.1E-13 78.5 3.9 53 66-126 12-65 (75)
4 COG0762 Predicted integral mem 97.6 8.5E-05 1.8E-09 58.8 5.0 49 70-126 30-79 (96)
5 PF02194 PXA: PXA domain; Int 20.2 3.2E+02 0.007 22.7 5.9 65 135-202 4-69 (185)
6 PF05663 DUF809: Protein of un 19.8 92 0.002 26.1 2.4 18 142-159 30-47 (138)
7 PF08774 VRR_NUC: VRR-NUC doma 16.9 88 0.0019 23.9 1.6 18 233-250 73-90 (100)
8 PHA02845 hypothetical protein; 14.0 2.3E+02 0.0051 23.0 3.3 31 169-205 33-63 (91)
9 PF02077 SURF4: SURF4 family; 12.3 2.4E+02 0.0051 26.6 3.4 25 162-186 3-27 (267)
10 PF11820 DUF3339: Protein of u 11.5 7.3E+02 0.016 19.1 5.4 36 116-151 3-62 (68)
No 1
>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19. It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane
Probab=99.78 E-value=5.7e-19 Score=132.22 Aligned_cols=73 Identities=37% Similarity=0.775 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CcchHHHHHhhhhHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHHHHH
Q 025356 135 IMSFLNIYNTLLIVRLVLTWFPNS-PPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAITSAAAA 208 (254)
Q Consensus 135 L~~ll~Iy~~lLLIRaILSWvp~~-~npI~~~L~qLTEPiL~PfRRIIP~iGG~IDfSPLValLvL~lL~~ll~~ 208 (254)
++.++++|.+++++|+++||++.+ +||+.++++++|||+++|+||++|++|| +|+||+++++++++++.++.+
T Consensus 1 l~~~~~~~~~~i~~r~ilsw~~~~~~~~~~~~i~~~TeP~l~p~r~~ip~~g~-iD~S~lv~~~~l~~l~~~l~~ 74 (75)
T PF02325_consen 1 LNTLLSIYIWLIILRFILSWFPANPYNPFVQFIYRITEPILRPFRRIIPPIGG-IDFSPLVALIVLQFLKIILVG 74 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCccccChHHHHHHHHhhHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999876 6899999999999999999999999999 999999999999999988754
No 2
>COG0762 Predicted integral membrane protein [Function unknown]
Probab=99.69 E-value=1.6e-16 Score=125.41 Aligned_cols=75 Identities=39% Similarity=0.755 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC--cchHHHHHhhhhHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHHHHHc
Q 025356 134 GIMSFLNIYNTLLIVRLVLTWFPNSP--PAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAITSAAAAL 209 (254)
Q Consensus 134 LL~~ll~Iy~~lLLIRaILSWvp~~~--npI~~~L~qLTEPiL~PfRRIIP~iGG~IDfSPLValLvL~lL~~ll~~L 209 (254)
.+..++..|.+.++++.++||+++.+ +++.++++++|||+++|+||++|++|| +|+||+++++++++++.++.++
T Consensus 13 ~l~~~i~~~~~~~ii~~~lsw~~~~~~~~~i~~~l~~lteP~L~p~Rr~ip~lgg-iD~Spiv~iliL~~l~~~l~~~ 89 (96)
T COG0762 13 VLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPLGG-IDFSPIVALLILQFLQFFLIRL 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCHHHHHHHHhhHhHHHHHHhCCCccC-chHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998864 499999999999999999999999999 9999999999999999887663
No 3
>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19. It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane
Probab=98.79 E-value=5e-09 Score=78.48 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhcccCCchHHHHHhhhhhhhhhcccccccccccccc-CCCCchhhhHHHHHH
Q 025356 66 ITDKVSKFLNSLASHNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNP-LGNHNFAAVLPGDSV 126 (254)
Q Consensus 66 ~~~~~~~~~~r~~~~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP-~g~iD~Aall~a~lv 126 (254)
..=|+...|.+.+.+||+.|+++++|||+ ++|+||++| .|++|++++++.+++
T Consensus 12 i~~r~ilsw~~~~~~~~~~~~i~~~TeP~--------l~p~r~~ip~~g~iD~S~lv~~~~l 65 (75)
T PF02325_consen 12 IILRFILSWFPANPYNPFVQFIYRITEPI--------LRPFRRIIPPIGGIDFSPLVALIVL 65 (75)
T ss_pred HHHHHHHHhcCccccChHHHHHHHHhhHH--------HHHHHHHcCCCCCccHHHHHHHHHH
Confidence 34588889999999999999999999999 999999999 999999999977666
No 4
>COG0762 Predicted integral membrane protein [Function unknown]
Probab=97.64 E-value=8.5e-05 Score=58.83 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=40.8
Q ss_pred HHHHHhhcccCCchHHHHHhhhhhhhhhcccccccccccccc-CCCCchhhhHHHHHH
Q 025356 70 VSKFLNSLASHNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNP-LGNHNFAAVLPGDSV 126 (254)
Q Consensus 70 ~~~~~~r~~~~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP-~g~iD~Aall~a~lv 126 (254)
+..-+...+..||+.|++.+.|+|+ ++|+||++| +|++|++.+++.+++
T Consensus 30 ~lsw~~~~~~~~~i~~~l~~lteP~--------L~p~Rr~ip~lggiD~Spiv~iliL 79 (96)
T COG0762 30 LLSWFPPAGETNPIGRLLAQLTEPL--------LRPFRRLIPPLGGIDFSPIVALLIL 79 (96)
T ss_pred HHHhcCCCCcccCHHHHHHHHhhHh--------HHHHHHhCCCccCchHHHHHHHHHH
Confidence 3344445555679999999999999 999999999 999999999976665
No 5
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=20.25 E-value=3.2e+02 Score=22.71 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC-CcchHHHHHhhhhHHHhhhhhhcCCCCCccchHHHHHHHHHHHH
Q 025356 135 IMSFLNIYNTLLIVRLVLTWFPNS-PPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAI 202 (254)
Q Consensus 135 L~~ll~Iy~~lLLIRaILSWvp~~-~npI~~~L~qLTEPiL~PfRRIIP~iGG~IDfSPLValLvL~lL 202 (254)
++..++-+.-.++=.+|.+|+... .++ .|...+..=+-.-++++.-.+.. +|+..+++-=++.++
T Consensus 4 vd~~l~~li~~I~rdfV~sWY~~Is~d~--~F~~ei~~~l~~~~~~l~~R~~~-vD~~~ll~~~l~~~l 69 (185)
T PF02194_consen 4 VDEALHELIDLILRDFVNSWYSKISPDP--EFPNEIRRILRHALRELSQRLSR-VDLVKLLLDDLLPIL 69 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCcH--HHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 345566666677888999999754 344 44444433333333333333455 999998765555554
No 6
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=19.83 E-value=92 Score=26.10 Aligned_cols=18 Identities=33% Similarity=0.756 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcccCCC
Q 025356 142 YNTLLIVRLVLTWFPNSP 159 (254)
Q Consensus 142 y~~lLLIRaILSWvp~~~ 159 (254)
+.+++++.+++||+.+..
T Consensus 30 layllmahiwlswfsnnq 47 (138)
T PF05663_consen 30 LAYLLMAHIWLSWFSNNQ 47 (138)
T ss_pred HHHHHHHHHHHHHHcCcH
Confidence 445678889999997654
No 7
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=16.90 E-value=88 Score=23.87 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.1
Q ss_pred CCCCchHHHHHHHHhccC
Q 025356 233 TNLTTPQKKWIRRLSNNR 250 (254)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~ 250 (254)
..++..|+.|++++.+.+
T Consensus 73 ~~ls~~Q~~~~~~l~~~G 90 (100)
T PF08774_consen 73 DRLSPNQKEWIDKLREAG 90 (100)
T ss_pred CCcCHHHHHHHHHHHHCC
Confidence 348999999999998764
No 8
>PHA02845 hypothetical protein; Provisional
Probab=14.00 E-value=2.3e+02 Score=22.99 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=21.6
Q ss_pred hhhHHHhhhhhhcCCCCCccchHHHHHHHHHHHHHHH
Q 025356 169 LCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAITSA 205 (254)
Q Consensus 169 LTEPiL~PfRRIIP~iGG~IDfSPLValLvL~lL~~l 205 (254)
=.-|+++|++|++ +|+.-.+..+..-.++.+
T Consensus 33 ~~~~llRP~~RLl------fDl~i~viVi~~~~iRlv 63 (91)
T PHA02845 33 NHHYLFRPFIRLT------IDLILLIIVMIFLMIRIL 63 (91)
T ss_pred cccHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3558999999997 898766665555444443
No 9
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=12.30 E-value=2.4e+02 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.2
Q ss_pred hHHHHHhhhhHHHhhhhhhcCCCCC
Q 025356 162 IVSPLSTLCDPYLNIFRGIIPPLGG 186 (254)
Q Consensus 162 I~~~L~qLTEPiL~PfRRIIP~iGG 186 (254)
...-+..++|+++++.|+++|.+|+
T Consensus 3 ~~~~~ed~~~~~~~~~K~~LP~iaR 27 (267)
T PF02077_consen 3 FLSKAEDLADQVLRPTKPYLPTIAR 27 (267)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3445678899999999999999988
No 10
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.
Probab=11.46 E-value=7.3e+02 Score=19.13 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 025356 116 NFAAVLPGDSVGGL------------------------VVANGIMSFLNIYNTLLIVRLV 151 (254)
Q Consensus 116 D~Aall~a~lv~~~------------------------~Li~LL~~ll~Iy~~lLLIRaI 151 (254)
||+.++.+..+..+ ....++..++..-.+.++..++
T Consensus 3 DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veFgn~~Tsg~si~vHa~iff~l~~i~~va~ 62 (68)
T PF11820_consen 3 DWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEFGNMKTSGKSILVHALIFFALFTIFLVAI 62 (68)
T ss_pred cchhHHHHHHHHHHhCCceEEEecCCCceEEEcCCcchHHHHHHHHHHHHHHHHHHHHHh
Done!