Query 025356
Match_columns 254
No_of_seqs 257 out of 1132
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djc_B Sodium channel protein 29.9 24 0.00081 22.6 1.6 15 236-250 1-15 (35)
2 1byy_A Protein (sodium channel 23.2 38 0.0013 23.1 1.8 16 234-249 16-31 (53)
3 3ldz_A STAM-1, signal transduc 11.5 1.2E+02 0.0041 24.0 2.2 30 80-126 3-33 (140)
4 2kvo_A Photosystem II reaction 8.2 1.1E+02 0.0037 24.8 0.8 18 65-82 88-105 (120)
5 3j1r_A Archaeal adhesion filam 6.8 2.1E+02 0.0073 17.4 1.5 16 190-205 1-16 (26)
6 3g2s_A C-terminal fragment of 6.5 2.7E+02 0.0091 22.4 2.4 31 74-121 3-33 (149)
7 2knc_B Integrin beta-3; transm 6.4 7.8E+02 0.027 17.8 4.9 12 114-125 7-18 (79)
8 2ifo_A Inovirus; helical virus 6.0 1.7E+02 0.0059 19.9 0.8 7 115-121 6-12 (46)
9 1eys_H Photosynthetic reaction 5.8 4.4E+02 0.015 23.6 3.6 28 112-153 6-33 (259)
10 1jb0_L Photosystem 1 reaction 5.7 4.2E+02 0.014 22.2 3.2 64 72-143 29-97 (154)
No 1
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=29.92 E-value=24 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=10.8
Q ss_pred CchHHHHHHHHhccC
Q 025356 236 TTPQKKWIRRLSNNR 250 (254)
Q Consensus 236 ~~~~~~~~~~~~~~~ 250 (254)
|..||||.+-+....
T Consensus 1 t~~Qkk~y~amkKl~ 15 (35)
T 4djc_B 1 SNAQKKYYNAMKKLG 15 (35)
T ss_pred CHhHHHHHHHHHHHc
Confidence 678999987765443
No 2
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=23.19 E-value=38 Score=23.15 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.2
Q ss_pred CCCchHHHHHHHHhcc
Q 025356 234 NLTTPQKKWIRRLSNN 249 (254)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (254)
-+|..||||.+-+..-
T Consensus 16 fmT~~Qkk~y~amkkl 31 (53)
T 1byy_A 16 FMTEEQKKYYNAMKKL 31 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3799999998775543
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=11.53 E-value=1.2e+02 Score=23.99 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCchHHHHHhhhhhhhhhccccccccccccccCCCCchhhhH-HHHHH
Q 025356 80 HNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVL-PGDSV 126 (254)
Q Consensus 80 ~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall-~a~lv 126 (254)
.|||.+.|-|+|++- ...-||+.++ +++.+
T Consensus 3 ~~p~d~~iekAT~~~-----------------l~~~dw~~ileicD~I 33 (140)
T 3ldz_A 3 TNPFDQDVEKATSEM-----------------NTAEDWGLILDICDKV 33 (140)
T ss_dssp CCTTHHHHHHHTCTT-----------------SSSCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCCC-----------------CCCcCHHHHHHHHHHH
Confidence 589999999999997 5566887766 34444
No 4
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=8.18 E-value=1.1e+02 Score=24.84 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhhcccCCc
Q 025356 65 SITDKVSKFLNSLASHNP 82 (254)
Q Consensus 65 ~~~~~~~~~~~r~~~~NP 82 (254)
..-|||.|||.|-+-.|=
T Consensus 88 ~~WdRFMRFMeRYA~~Ng 105 (120)
T 2kvo_A 88 PEWDRFMRFMERYGAENG 105 (120)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 467999999999886664
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=6.85 E-value=2.1e+02 Score=17.42 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 025356 190 LSPILAFLVLNAITSA 205 (254)
Q Consensus 190 fSPLValLvL~lL~~l 205 (254)
.||+++.++|.++...
T Consensus 1 ispiVA~~lLIviav~ 16 (26)
T 3j1r_A 1 VSPVIATLLLILIAVA 16 (26)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHH
Confidence 3788887777665544
No 6
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=6.54 E-value=2.7e+02 Score=22.40 Aligned_cols=31 Identities=6% Similarity=0.107 Sum_probs=23.8
Q ss_pred HhhcccCCchHHHHHhhhhhhhhhccccccccccccccCCCCchhhhH
Q 025356 74 LNSLASHNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVL 121 (254)
Q Consensus 74 ~~r~~~~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall 121 (254)
++.-...+|+.+.|-++|++- ...-||+.++
T Consensus 3 ~~~~~~~~~~~~~IekATs~~-----------------l~~~dw~~il 33 (149)
T 3g2s_A 3 MEPAMEPETLEARINRATNPL-----------------NKELDWASIN 33 (149)
T ss_dssp -CCCCSCCCHHHHHHHHSCTT-----------------CSSCCHHHHH
T ss_pred CCcCCCCCcHHHHHHHHcCCC-----------------CCCcCHHHHH
Confidence 344556799999999999998 5566888765
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.38 E-value=7.8e+02 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=7.2
Q ss_pred CCchhhhHHHHH
Q 025356 114 NHNFAAVLPGDS 125 (254)
Q Consensus 114 ~iD~Aall~a~l 125 (254)
+.|.++++.+.+
T Consensus 7 ~~n~~~Iv~gvi 18 (79)
T 2knc_B 7 GPDILVVLLSVM 18 (79)
T ss_dssp SSCSHHHHHHHH
T ss_pred CCCchhhHHHHH
Confidence 457777775533
No 8
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=6.02 E-value=1.7e+02 Score=19.88 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=3.0
Q ss_pred CchhhhH
Q 025356 115 HNFAAVL 121 (254)
Q Consensus 115 iD~Aall 121 (254)
+|..++.
T Consensus 6 iDv~~V~ 12 (46)
T 2ifo_A 6 VDVGDVV 12 (46)
T ss_dssp HHHHHHH
T ss_pred CcHHHHH
Confidence 4444444
No 9
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=5.80 E-value=4.4e+02 Score=23.57 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=17.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025356 112 LGNHNFAAVLPGDSVGGLVVANGIMSFLNIYNTLLIVRLVLT 153 (254)
Q Consensus 112 ~g~iD~Aall~a~lv~~~~Li~LL~~ll~Iy~~lLLIRaILS 153 (254)
.|.+|.|.+.+ +++.+|+..|+.+.--.
T Consensus 6 ~~~~d~a~~~~--------------~~fw~ffa~li~yl~~e 33 (259)
T 1eys_H 6 THYIDAAQITI--------------WAFWLFFFGLIIYLRRE 33 (259)
T ss_dssp -CCCCHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHH--------------HHHHHHHHHHHHHHhcc
Confidence 46778877764 66777777777655433
No 10
>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.31.1.1 PDB: 3pcq_L*
Probab=5.72 E-value=4.2e+02 Score=22.19 Aligned_cols=64 Identities=17% Similarity=0.388 Sum_probs=39.9
Q ss_pred HHHhhcccCCc----hHHHH-HhhhhhhhhhccccccccccccccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025356 72 KFLNSLASHNP----LIQKF-LSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVLPGDSVGGLVVANGIMSFLNIYN 143 (254)
Q Consensus 72 ~~~~r~~~~NP----~sQfi-~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall~a~lv~~~~Li~LL~~ll~Iy~ 143 (254)
.|+.++..|-+ +.+-+ +-+.+-. +.+.|..+.-|+.+-|.|.+ +.+++.+.++.++...+.+|-
T Consensus 29 ~fl~NLPaYR~GLSp~~RGLEiGmAHGY------fL~GPF~~lGPLRnte~a~l--aGllsaiglv~IlT~~LsiYg 97 (154)
T 1jb0_L 29 TFIGNLPAYRQGLSPILRGLEVGMAHGY------FLIGPWVKLGPLRDSDVANL--GGLISGIALILVATACLAAYG 97 (154)
T ss_dssp HHHHTSTTTCTTCCHHHHHHHHHHHHHH------HHTHHHHHHSTTTTSTTHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccccccCCHHhhhhhhhhccee------eeechhHhcccCcCcchHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 46677887755 33333 2333322 34899999999988886543 445555666666666677765
Done!