Query 025356
Match_columns 254
No_of_seqs 257 out of 1132
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025356.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025356hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cr5a1 b.52.2.3 (A:26-107) N- 7.5 49 0.0036 22.9 0.4 11 234-244 55-65 (82)
2 d1qcsa1 b.52.2.3 (A:0-85) N-te 6.3 62 0.0045 22.4 0.4 10 235-244 63-72 (86)
3 d2ywqa1 d.204.1.1 (A:1-95) Rib 5.0 1.8E+02 0.013 19.1 2.3 20 57-76 74-93 (95)
4 d1jb0l_ f.31.1.1 (L:) Photosys 5.0 2.4E+02 0.017 21.6 3.2 64 72-143 26-94 (151)
5 d1iv8a2 c.1.8.1 (A:1-653) Malt 4.4 1.5E+02 0.011 27.2 1.9 33 62-94 547-579 (653)
6 d1gkub1 c.37.1.16 (B:1-250) He 4.2 1.8E+02 0.013 21.7 1.9 17 235-251 44-60 (237)
7 d1dvpa1 a.118.9.2 (A:1-145) Hr 4.1 2.3E+02 0.017 20.4 2.4 26 79-121 2-27 (145)
8 d1elka_ a.118.9.2 (A:) Tom1 pr 4.1 1.5E+02 0.011 21.8 1.3 26 79-121 9-34 (153)
9 d1l0ba2 c.15.1.3 (A:1705-1801) 3.9 1.9E+02 0.014 20.7 1.7 17 233-249 14-30 (97)
10 d1imua_ d.204.1.1 (A:) Ribosom 3.8 2.4E+02 0.018 18.9 2.2 21 57-77 68-88 (107)
No 1
>d1cr5a1 b.52.2.3 (A:26-107) N-terminal domain of NSF-N, NSF-Nn {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=7.55 E-value=49 Score=22.87 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=8.7
Q ss_pred CCCchHHHHHH
Q 025356 234 NLTTPQKKWIR 244 (254)
Q Consensus 234 ~~~~~~~~~~~ 244 (254)
.++..||||.+
T Consensus 55 gln~~QR~wa~ 65 (82)
T d1cr5a1 55 GFNGNQRTWGG 65 (82)
T ss_dssp EECHHHHHHHT
T ss_pred ecchhhhhhhc
Confidence 37888999975
No 2
>d1qcsa1 b.52.2.3 (A:0-85) N-terminal domain of NSF-N, NSF-Nn {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=6.31 E-value=62 Score=22.42 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=7.9
Q ss_pred CCchHHHHHH
Q 025356 235 LTTPQKKWIR 244 (254)
Q Consensus 235 ~~~~~~~~~~ 244 (254)
++..||||.+
T Consensus 63 ln~~QR~wa~ 72 (86)
T d1qcsa1 63 FSLPQRKWAG 72 (86)
T ss_dssp ECHHHHHHHT
T ss_pred ccHhhHhhhc
Confidence 7788888875
No 3
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=5.02 E-value=1.8e+02 Score=19.12 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.9
Q ss_pred HhhhhhHHhHHHHHHHHHhh
Q 025356 57 RDLQNSVISITDKVSKFLNS 76 (254)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~r 76 (254)
.|++.++..|+|+.-+|+.+
T Consensus 74 ~d~y~AiD~a~~klerqLrK 93 (95)
T d2ywqa1 74 ADLYAAIDRAVDRLETQVKR 93 (95)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999876
No 4
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.99 E-value=2.4e+02 Score=21.65 Aligned_cols=64 Identities=17% Similarity=0.388 Sum_probs=38.3
Q ss_pred HHHhhcccCCc----hHHHH-HhhhhhhhhhccccccccccccccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025356 72 KFLNSLASHNP----LIQKF-LSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVLPGDSVGGLVVANGIMSFLNIYN 143 (254)
Q Consensus 72 ~~~~r~~~~NP----~sQfi-~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall~a~lv~~~~Li~LL~~ll~Iy~ 143 (254)
.|+..+..|-+ +.+-+ +-+.+-. +.+.|..+.=|+.+-|.|.+ +.+++.+.++.++...+.+|-
T Consensus 26 ~fi~NLP~YR~GlSp~~RGLEiGmAHGY------fL~GPF~~lGPLRnt~~a~~--aGllsaiglv~Ilt~~L~lYg 94 (151)
T d1jb0l_ 26 TFIGNLPAYRQGLSPILRGLEVGMAHGY------FLIGPWVKLGPLRDSDVANL--GGLISGIALILVATACLAAYG 94 (151)
T ss_dssp HHHHTSTTTCTTCCHHHHHHHHHHHHHH------HHTHHHHHHSTTTTSTTHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccCChhhhhhHHhhhcee------eeechhhhhcCCcCchHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 35567777755 33322 2222222 23789999999888888653 455555566666666666663
No 5
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=4.39 E-value=1.5e+02 Score=27.16 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=26.1
Q ss_pred hHHhHHHHHHHHHhhcccCCchHHHHHhhhhhh
Q 025356 62 SVISITDKVSKFLNSLASHNPLIQKFLSLSAEF 94 (254)
Q Consensus 62 ~~~~~~~~~~~~~~r~~~~NP~sQfi~k~T~pl 94 (254)
.+......|...++.+...|-++|.++|+|-|=
T Consensus 547 ~~~~~~~~~~~~~~~~g~~n~l~q~~l~~~~pg 579 (653)
T d1iv8a2 547 DFIKSFMKFESKIRRIGMIKSLSLVALKIMSAG 579 (653)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556677777788889999999999999764
No 6
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.20 E-value=1.8e+02 Score=21.68 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.9
Q ss_pred CCchHHHHHHHHhccCC
Q 025356 235 LTTPQKKWIRRLSNNRG 251 (254)
Q Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (254)
++.-|+.|++++-.+|+
T Consensus 44 p~~~Q~~~i~~~l~g~~ 60 (237)
T d1gkub1 44 PRAIQKMWAKRILRKES 60 (237)
T ss_dssp CCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHCCCC
Confidence 47789999999877764
No 7
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=4.12 E-value=2.3e+02 Score=20.37 Aligned_cols=26 Identities=4% Similarity=0.178 Sum_probs=20.1
Q ss_pred cCCchHHHHHhhhhhhhhhccccccccccccccCCCCchhhhH
Q 025356 79 SHNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVL 121 (254)
Q Consensus 79 ~~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall 121 (254)
|.++|-+.|-|+|++. ....||+.++
T Consensus 2 ~~s~~~~~iekAT~~~-----------------~~~~dw~~il 27 (145)
T d1dvpa1 2 FRSSFCKNLENATSHL-----------------RLEPDWPSIL 27 (145)
T ss_dssp CCSHHHHHHHHHHCTT-----------------CSSCCHHHHH
T ss_pred CcchHHHHHHHHcCcC-----------------CCCCCHHHHH
Confidence 4567888999999988 5566887776
No 8
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.12 E-value=1.5e+02 Score=21.84 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=20.1
Q ss_pred cCCchHHHHHhhhhhhhhhccccccccccccccCCCCchhhhH
Q 025356 79 SHNPLIQKFLSLSAEFHSFCHQVRCRNNVKMNPLGNHNFAAVL 121 (254)
Q Consensus 79 ~~NP~sQfi~k~T~pl~~~~~~~~v~PlrriiP~g~iD~Aall 121 (254)
+.+|+.+.|-|+|++. +..-||+.++
T Consensus 9 ~~t~~~~~vekAT~~~-----------------l~~~dw~~il 34 (153)
T d1elka_ 9 FSSPVGQRIEKATDGS-----------------LQSEDWALNM 34 (153)
T ss_dssp GGSHHHHHHHHHTCTT-----------------CSSCCHHHHH
T ss_pred CCChHHHHHHHHcCCC-----------------CCcccHHHHH
Confidence 4567788999999998 5566887765
No 9
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.89 E-value=1.9e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCCCchHHHHHHHHhcc
Q 025356 233 TNLTTPQKKWIRRLSNN 249 (254)
Q Consensus 233 ~~~~~~~~~~~~~~~~~ 249 (254)
|+.|+.|-+||=.+||.
T Consensus 14 t~mt~d~Le~mv~lCGA 30 (97)
T d1l0ba2 14 TNMPKDELERMLQLCGA 30 (97)
T ss_dssp SSSCHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHcCc
Confidence 78999999999999985
No 10
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=3.83 E-value=2.4e+02 Score=18.92 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.5
Q ss_pred HhhhhhHHhHHHHHHHHHhhc
Q 025356 57 RDLQNSVISITDKVSKFLNSL 77 (254)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~r~ 77 (254)
.+++.++..|.||.-+|+.+.
T Consensus 68 ~d~y~Aid~a~~kl~rqLrk~ 88 (107)
T d1imua_ 68 DDMYKAINEVEEKLERQLNKL 88 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999764
Done!