BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025357
(254 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/221 (82%), Positives = 199/221 (90%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M DSYC DCKRLTE+VFDHSAGDTICSECGL+LEA+SVDETSEWR F+NESSDHDP RVG
Sbjct: 1 MEDSYCPDCKRLTEIVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GPLNPLL+ GGLST I+K T GGS ELLS SLGK Q+R ++PDRN IQAFKSI+AM+DRL
Sbjct: 61 GPLNPLLADGGLSTTISK-TNGGSNELLSCSLGKWQSRGANPDRNRIQAFKSIAAMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLVTTIKDRANEIYKKVEDQKPL+GRNQ+AI+AACLYIACRQENK RTVKE CSV NGTT
Sbjct: 120 GLVTTIKDRANEIYKKVEDQKPLKGRNQDAILAACLYIACRQENKARTVKEICSVVNGTT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKEFIVKHLE EMG S+EMGTIHA+DYL F N+
Sbjct: 180 KKEIGRAKEFIVKHLEVEMGHSMEMGTIHAADYLRRFCSNL 220
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 172/224 (76%), Positives = 198/224 (88%), Gaps = 1/224 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD+YC DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES+D+DPVRVG
Sbjct: 1 MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVI+KPT G S + L+ SLG+ Q R S+PDR+LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLADGGLSTVISKPT-GASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQKPLRGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK LE E+GQS+EMGTIHA D+L F ++ N
Sbjct: 180 KKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMN 223
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 167/218 (76%), Positives = 191/218 (87%), Gaps = 1/218 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D+YC +CKR TEVV DHSAGDT+CSECGLVLEA+S+DE SEWR FANES+D+DPVRVG
Sbjct: 1 MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGG-STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLST+I+KP+ GG S + LS SLG+ Q R S+PDR+LIQAFK+I+ M DR
Sbjct: 61 GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR 120
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGLV TIKD ANEIYKKVEDQKPLRGRNQ+AI+AAC+YIACRQE+KPRTVKE CSVANG
Sbjct: 121 LGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVANGA 180
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
TKKEIGRAKE+IVK LE EMGQS+EMGTIHA D+L F
Sbjct: 181 TKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRF 218
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/224 (75%), Positives = 190/224 (84%), Gaps = 1/224 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D+YC+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+ N
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 191/221 (86%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD++C DCK+ TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK LEAE GQSVEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNL 220
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 191/221 (86%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MAD++C DCK+ TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK LEAE GQSVEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNL 220
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 190/224 (84%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E G +VEMGTIHA D++ F N+ N
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMN 224
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 169/224 (75%), Positives = 190/224 (84%), Gaps = 1/224 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+ N
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 189/221 (85%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLITAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/217 (76%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANESSD+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/217 (76%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/224 (74%), Positives = 191/224 (85%), Gaps = 1/224 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + E LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLADGGLSTVIAKPN-GTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+ N
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMN 223
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/217 (76%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/217 (75%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 166/221 (75%), Positives = 189/221 (85%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M D++C+DCK+ TEVV DHSAGDT+CSECGLVLE++S+DETSEWRIFANES D+DPVRVG
Sbjct: 1 MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLGLEAGQSVEMGTIHAGDFMRRFCSNL 220
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 164/217 (75%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 346 bits (887), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 163/221 (73%), Positives = 190/221 (85%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 220
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/217 (75%), Positives = 188/217 (86%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA ++L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGNFLRRF 216
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 162/221 (73%), Positives = 189/221 (85%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQ VEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNL 220
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 161/212 (75%), Positives = 183/212 (86%), Gaps = 1/212 (0%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK+ TEVVFDHSAGDT+C ECGLVLEA+S+DETSEWR FANE+ D+DPVRVGGP NP
Sbjct: 7 CPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNP 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LL+ GGLSTVI+KP G S + LS SLG+ Q R S+PDR+LI AFK+I MSDRLGLV T
Sbjct: 67 LLTDGGLSTVISKPN-GASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVAT 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
IKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE+KPRTVKE CSVANG +KKE+G
Sbjct: 126 IKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVG 185
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
RAKEFIVK LE EMG+S+EMGTIHA D+L F
Sbjct: 186 RAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRF 217
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 189/225 (84%), Gaps = 1/225 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGST-ELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LI AFK+I+ MSDR
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDR 120
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG
Sbjct: 121 LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 180
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
TKKEIGRAKE+IVK L E G +VEMGTIHA D++ F N+ N
Sbjct: 181 TKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMN 225
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/225 (72%), Positives = 189/225 (84%), Gaps = 2/225 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGD +CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G S + LS SLG+ Q R S+PDR LI AFK+I M++RL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CS+ANG T
Sbjct: 120 GLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEM-GQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+ N
Sbjct: 180 KKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMN 224
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 187/221 (84%), Gaps = 7/221 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M++++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GGS E LS S+G+ Q +R LI AFK+I+ MSDRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GGSGEFLSSSVGRWQ------NRGLIVAFKTIATMSDRL 113
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 114 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 173
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQSVE+GTIHA D++ F N+
Sbjct: 174 KKEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNL 214
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/209 (74%), Positives = 178/209 (85%), Gaps = 1/209 (0%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVGGP NPLL+ GGL
Sbjct: 2 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 61
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRLGLV TIKDRANE
Sbjct: 62 TTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANE 120
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
IYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG TKKEIGRAKE+IV
Sbjct: 121 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 180
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K L E GQ VEMGTIHA D++ F N+
Sbjct: 181 KQLGLETGQLVEMGTIHAGDFMRRFCSNL 209
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/221 (68%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANEIYKRLEDQKTTRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAK++IVK L + GQSVE+GTIHA D++ F N+
Sbjct: 180 KKEIGRAKDYIVKTLGLDPGQSVELGTIHAGDFMRRFCSNL 220
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAK++IVK L E GQSV++GTIHA D++ F N+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNL 220
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 156/221 (70%), Positives = 181/221 (81%), Gaps = 17/221 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP+ GGS+E LS SLG+ Q+R ++ F RL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPS-GGSSEFLSSSLGRWQSR--------VKNF--------RL 103
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 104 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 163
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQSVEMGTIHA D++ F N+
Sbjct: 164 KKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNL 204
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/227 (64%), Positives = 182/227 (80%), Gaps = 6/227 (2%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C +C++ TEVV DH+AGD +C+ECGLVLE +SVDE+SEWR F++ +S DPVRVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFSDSTS-SDPVRVG 59
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST+I+KP G + +S SLG+ Q R S+PDR+LI AF+SI M+DRL
Sbjct: 60 GPSNPLLTDGGLSTIISKPN-GAQGDFMS-SLGRWQNRGSNPDRSLIIAFRSIGTMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK-EFCSVANGT 179
GLV+TIKDRANEIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT K E CSVANG
Sbjct: 118 GLVSTIKDRANEIYKKVEDLKSIRGRSQDAILAACLYIACRQEDKPRTFKAEICSVANGA 177
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL--LNIFKN 224
+KK+IGRA +FIVK LE +MG S+EMGTIHA D+L F LN+ N
Sbjct: 178 SKKDIGRATKFIVKQLEEDMGISMEMGTIHAGDFLRRFCSHLNMENN 224
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/217 (62%), Positives = 171/217 (78%), Gaps = 3/217 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C DC+R ++V DH+AGDT+C ECGLVLEA+ +DE+SEWR F+++S +DPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST I++ G ++ +LGK Q ++PDR L+ AFK+I M+DRL
Sbjct: 61 GPSNPLLTDGGLSTTISR---GNGSQGDYAALGKWQNHGTNPDRALLLAFKTIGTMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV+TIKDRA+EIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT KE SVANG T
Sbjct: 118 GLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGAT 177
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRA FIVK LE EMG+S+ MG+IHA D+L F
Sbjct: 178 KKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRF 214
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/192 (72%), Positives = 157/192 (81%), Gaps = 1/192 (0%)
Query: 30 GLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLS 89
GL + +TSEWR FANES D+DPVRVGGP NPLL+ GGLSTVIAKP G S + LS
Sbjct: 30 GLCWSLTRLMQTSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPN-GVSGDFLS 88
Query: 90 GSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQE 149
SLG+ Q R S+PDR LI AFK+I+ MSDRLGLV TIKDRANEIYKKVEDQK RGRNQ+
Sbjct: 89 SSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQD 148
Query: 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH 209
A++AACLYIACRQE+KPRTVKE CSVANG TKKEIGRAKE+IVK LEAE GQSVEMGTIH
Sbjct: 149 ALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIH 208
Query: 210 ASDYLVIFLLNI 221
A D++ F N+
Sbjct: 209 AGDFMRRFCSNL 220
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/217 (58%), Positives = 159/217 (73%), Gaps = 13/217 (5%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + C DC+R ++V DH+AGDT+C ECGL+ F+++S +DPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVG 50
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLST I++ G ++ +LGK Q ++PDR L+ AFK+I M+DRL
Sbjct: 51 GPSNPLLTDGGLSTTISR---GNGSQGDYAALGKWQNHGTNPDRALLLAFKTIGTMADRL 107
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV+TIKDRA+EIYKKVED K +RGR+Q+AI+AACLYIACRQE+KPRT KE SVANG T
Sbjct: 108 GLVSTIKDRADEIYKKVEDMKSIRGRSQDAILAACLYIACRQEDKPRTFKEIHSVANGAT 167
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRA FIVK LE EMG+S+ MG+IHA D+L F
Sbjct: 168 KKEIGRATNFIVKRLEEEMGKSMSMGSIHAGDFLRRF 204
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/214 (55%), Positives = 158/214 (73%), Gaps = 4/214 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M ++ C++C+++T+VV D +AGD +C+ECGLVLE SVDET EWR FA+ SS D R+G
Sbjct: 1 MYETVCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFAD-SSSIDRERIG 59
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLS+ I+K + G +++S S+ + PD++ I AF+SI M+DRL
Sbjct: 60 GPSNPLLADGGLSSFISK-SNGAQGDVMS-SILRQSKLGLIPDQSRIIAFRSIGNMADRL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK-EFCSVANGT 179
GLV+TIKDRANEIYK V D K R R+ EAI+A+CLYIACRQE+KPRT K E CSV+NG
Sbjct: 118 GLVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYIACRQEDKPRTFKEEICSVSNGA 177
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDY 213
+K + GR + +VK +E MG S+EMGTIHA D+
Sbjct: 178 SKTDTGRITKKLVKQIEKGMGISMEMGTIHAGDF 211
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 143/229 (62%), Gaps = 12/229 (5%)
Query: 1 MADS--YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDP 56
MAD YC DC R TEVV DH+ GDTIC+EC LVLEA+ +DE SEWR FA++ D DP
Sbjct: 1 MADESVYCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDP 60
Query: 57 VRVGGPLNPLLSGGGLSTVIA----KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKS 112
RVGGP +P LS L T IA + T G L A + ++ L+ AF +
Sbjct: 61 SRVGGPSDPFLSNTPLVTRIAYAGPQKTQGEGGHALPRMRVSAGAGGADHEQALVDAFHA 120
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+DRA ++YK++++ K P RG+ ++ AACLY+ACR E KPRT K
Sbjct: 121 IADMADRLGLVGTIRDRAKDVYKRLDEAKACPTRGKKRDVFYAACLYVACRNEGKPRTYK 180
Query: 171 EFCSV--ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E +V A + KKEIG+ I K L E GQ +++G + A+DY+ F
Sbjct: 181 ELATVTAAGASAKKEIGKMTTLIKKVLGEEAGQVMDIGVVRAADYMRRF 229
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 140/217 (64%), Gaps = 6/217 (2%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDPVRVGGP 62
YC +C R T VV DH+ GDTIC+EC LVLE +DETSEWR F++ S D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P LS L TV+A P + + S ++ ++S D +L AF++IS M+DRL L
Sbjct: 71 SDPFLSHAELGTVVA-PAKRQAKDTASPPHVRVDSKSGQ-DSSLAVAFRAISDMADRLQL 128
Query: 123 VTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-TT 180
V TI+DRA E++KK+E+ K R RN++A AACL+IACR E PRT+KE SV
Sbjct: 129 VATIRDRAKELFKKMEEAKLCARVRNRDAAYAACLHIACRNEGNPRTLKELASVMRDCQD 188
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + I +HL E G ++EMG + A+DY+ F
Sbjct: 189 KKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRF 225
>gi|212721546|ref|NP_001131844.1| uncharacterized protein LOC100193219 [Zea mays]
gi|194692694|gb|ACF80431.1| unknown [Zea mays]
gi|414886464|tpg|DAA62478.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 136
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 110/136 (80%), Gaps = 1/136 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKK 136
GLV TIK R I +
Sbjct: 120 GLVATIKTREKVIQNR 135
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 142/226 (62%), Gaps = 14/226 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLL----SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMS 117
+P L G ++ A P + + LL+ ++ P+ L+ AF+ I+ M+
Sbjct: 70 RADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRR--RVDVVGPSPENALVAAFRGIADMA 127
Query: 118 DRLGLVTTIKDRANEIYKKVED--QKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
DRLGLV TI+DRA E++KK+ + K L RGRN++A+ AACL+IACR E PRT KE S
Sbjct: 128 DRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELAS 187
Query: 175 VA--NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLVIF 217
V KKEIGR I KHL + G+++++G + ++DYL F
Sbjct: 188 VTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRF 233
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 142/229 (62%), Gaps = 12/229 (5%)
Query: 1 MAD---SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHD 55
MAD +YC DC R TEVV DH+ GDTIC+EC LVLEA+ +DE SEWR FA++ D D
Sbjct: 1 MADDEPNYCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRD 60
Query: 56 PVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS---HPDRNLIQAFKS 112
P RVGG +P L+ L T IA + +L +L +S ++ L++ F +
Sbjct: 61 PSRVGGSSDPFLANMPLVTQIAYAGPQKAQGEGGHALPRLHVSASGGAGGEQTLVEGFHA 120
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+DRA ++YK++ + + P RG+ ++A AACLY+ACR E KPRT K
Sbjct: 121 IADMADRLGLVATIRDRAKDVYKRLGEARACPGRGKKRDAFYAACLYVACRNEGKPRTYK 180
Query: 171 EFCSVAN--GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E +V + KKEIG+ I K L E GQ +++G + SDY+ F
Sbjct: 181 ELATVTSDGAAAKKEIGKMTMLIKKVLGEEAGQVMDIGVVRPSDYMRRF 229
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 133/209 (63%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKSSACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 136/227 (59%), Gaps = 13/227 (5%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR------SSHPDRNLIQAFKSISA 115
+P L T IA A + + L R P+ L+ AF+ I+
Sbjct: 70 RADPFLPDHVGGTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIAD 129
Query: 116 MSDRLGLVTTIKDRANEIYKKV-EDQKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+DRLGLV TI+DRA E++KK+ E K RGRN++ + AACL+IACR E PRT KE
Sbjct: 130 MADRLGLVATIRDRAKEVFKKLGEAPKGFPRGRNRDTVYAACLFIACRNEGMPRTYKELA 189
Query: 174 SVA--NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLVIF 217
SV KKEIGR I KHL + G+++++G + ++DYL F
Sbjct: 190 SVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRF 236
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 136/209 (65%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD IC ECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG LST
Sbjct: 21 LIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLST 80
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I P G ++ SGS K Q R S DR+LI AFK IS M+DR+ L TI DRAN
Sbjct: 81 IIG-PGTGSASFDASGS-PKYQNRRTMSSSDRSLISAFKEISMMADRINLPKTIIDRANN 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 139 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 198 KALET----SVDL--ITTADFMSRFCANL 220
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 133/207 (64%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + + DR LI AF+ I+AM+DR+ L TI DRAN ++
Sbjct: 82 IIGPGTGAASFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRINLPRTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 138/209 (66%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ VD SEWR F+NE + DP RVG NPLLSGG LST
Sbjct: 17 LIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSRVGAAQNPLLSGGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I KP+ G + + G +RS S DR+L+ AF+ IS M+DR+ L I DRAN+
Sbjct: 77 LIEKPSGGNAD--IEGFARTHNSRSGMSGADRSLMNAFREISIMADRINLPRKIVDRANQ 134
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR+ + I +ACLYIACRQE PRT+KE C++ +KKEIGR + I+
Sbjct: 135 LFKQVHEQKSLKGRSNDTIASACLYIACRQEGVPRTLKEICAIGK-ISKKEIGRCFKLIL 193
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KHLE SV++ I + D++ F N+
Sbjct: 194 KHLET----SVDL--ITSGDFMSRFCSNL 216
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSG LST
Sbjct: 80 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGSDLST 139
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 140 MIGPGTGAASFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRINLPKTIVDRANTLF 199
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 200 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 258
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 259 LET----SVDL--ITTGDFMSRFCSNL 279
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTITDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
L SV++ I +D++ F N+
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANL 222
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 133/216 (61%), Gaps = 7/216 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C + ++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NP
Sbjct: 36 CCNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENP 95
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LLSGG LST+I T S + + + + S DR LI AFK IS M+DR+ L T
Sbjct: 96 LLSGGDLSTMIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 155
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I DRAN ++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIG
Sbjct: 156 ITDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIG 214
Query: 186 RAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
R + +K L SV++ I +D++ F N+
Sbjct: 215 RCFKLTLKAL----ATSVDL--ITTADFMSRFCANL 244
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVGGPENPLLNGADLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
VI T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 VIGPGTGAASFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRINLPKTIVDRANTLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
L SV++ I +D++ F N+
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANL 222
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
L SV++ I +D++ F N+
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANL 222
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLLSGG LST
Sbjct: 23 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR LI AFK IS M+DR+ L TI DRAN ++
Sbjct: 83 MIGPGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKTIVDRANNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +K
Sbjct: 143 KQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
L SV++ I +D++ F N+
Sbjct: 202 L----ATSVDL--ITTADFMSRFCANL 222
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G LST
Sbjct: 17 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGADLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + + + + S DR L+ AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 77 MIGPGTGAASFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRINLPKTIVDRANALF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNL 216
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/185 (49%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE +++DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I G S + S + + S DR LI AF+ IS M+D++ L TI DRAN ++
Sbjct: 82 IIGPGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKINLPKTIVDRANLLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR+ +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 200
Query: 195 LEAEM 199
LE ++
Sbjct: 201 LETQV 205
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + +DP RVG NPLL+GG LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVGDAQNPLLNGGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MISKGTGAASFDEFGNSKYQNRRTMSSADRAMLNAFKEITTMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 134/220 (60%), Gaps = 7/220 (3%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A+ C ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGG
Sbjct: 9 ANKVCCSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P NPLL G L+T+I S + + + + + DR LI AFK I+AM+DR+
Sbjct: 69 PENPLLGGSDLTTMIGPGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRIN 128
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI DRAN ++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K
Sbjct: 129 LPRTIVDRANNLFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISK 187
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+EIGR + I+K LE SV++ I D++ F N+
Sbjct: 188 REIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 221
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F+NE S+ DP RVG NPLL+G L+T
Sbjct: 21 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 80
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DRAN
Sbjct: 81 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANL 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 139 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 198 KALET----SVDL--ITTGDFMSRFCSNL 220
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 131/207 (63%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPLLNGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F+NE S+ DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DRAN
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTIVDRANL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNL 221
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 129/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + DP RVG NPLL+GG LST
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPLLNGGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNL 224
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 129/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNL 224
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F NE S++DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DR+N
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNL 221
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 132/209 (63%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G L+T
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLTT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I G S + + Q R S DR LI AF+ I+ M+DR+ L TI DRAN
Sbjct: 82 MIG--PGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRINLPRTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K+EIGR + I+
Sbjct: 140 LFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKREIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNL 221
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 132/209 (63%), Gaps = 13/209 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL+G L+T
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLNGSDLTT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I G S + + Q R S DR LI AF+ I+ M+DR+ L TI DRAN
Sbjct: 82 MIGP----GDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRINLPRTIVDRANN 137
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D + L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +K+EIGR + I+
Sbjct: 138 LFKQVHDGRNLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-ISKREIGRCFKLIL 196
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 197 KALET----SVDL--ITTGDFMSRFCSNL 219
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + I D++ F N+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNL 222
>gi|194701258|gb|ACF84713.1| unknown [Zea mays]
Length = 198
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/102 (80%), Positives = 92/102 (90%)
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+DRLGLV TIKDRANEI+KK+ED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSV
Sbjct: 1 MADRLGLVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSV 60
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
ANG TKKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 61 ANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 102
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 129/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS GGLST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGGLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ VD +EWR+F NE S++DP RVG NPLL+G L+T
Sbjct: 22 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAAENPLLNGSDLAT 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I K T G K Q R S DR L+ AF+ IS M+DR+ L TI DR+N
Sbjct: 82 MIGKGT--GDASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRINLTKTIVDRSNL 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 140 LFKQVHDGKTLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLIL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 199 KALET----SVDL--ITTGDFMSRFCSNL 221
>gi|223975949|gb|ACN32162.1| unknown [Zea mays]
gi|414886467|tpg|DAA62481.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 144
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 100/119 (84%), Gaps = 1/119 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGD +C+ECGLVLEA+SVDETSEWR FANES+D+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R S+PDR+LI AF++I+ M+DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADR 118
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 6/201 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C +C + T ++ DH GD +C+ECGLVLE+ VDE+SEWR F++ + + DP R GP N
Sbjct: 19 CRNCAKPTAIIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPTN 78
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+L+ GGLST I K G + L+ +L R ++PDR L+QAF I M+D LG+ +
Sbjct: 79 RMLANGGLSTSIGKNPDGTYNQTLT----RLHNRGANPDRALLQAFGRIGEMADHLGMTS 134
Query: 125 TIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A +IY+ V + +PL G++Q A+ AA LYIACRQE RT KE C A TT KE
Sbjct: 135 VVKDGACDIYRTVVKPGQPLLGKSQPAMFAASLYIACRQEGTNRTFKEICGGAPNTTVKE 194
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR ++IVK ++ Q +E
Sbjct: 195 IGRCYKYIVKAIDGLNTQMME 215
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD IC +CGLV+ VD +EWR+F NE S +DP RVG NPLL+G LST
Sbjct: 21 LIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAAENPLLNGSDLST 80
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I + T S + + + S DR LI AF+ ISAM DR+ L I DR+N ++
Sbjct: 81 IIGRGTGDASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRINLTRNIIDRSNALF 140
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D + L+GR+ +AI +ACLYIACRQE+ PRT KE C+V+ +KKEIGR + I+K
Sbjct: 141 KQVHDGRSLKGRSNDAIASACLYIACRQESVPRTFKEICAVSK-VSKKEIGRCFKLILKA 199
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SVE+ I D++ F N+
Sbjct: 200 LET----SVEL--ITTGDFMSRFCSNL 220
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 133/209 (63%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE ++ DP RVGG N LL+G LST
Sbjct: 23 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSENALLNGTDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I T GS + K Q R S DR L+ AFK IS M+DR+ L TI DRAN
Sbjct: 83 MIGPGT--GSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLPRTIVDRANN 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +ACLYI+CRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 141 LFKQVHDGKNLKGRSNDAIASACLYISCRQEGVPRTFKEICAVSK-ISKKEIGRCFKLIL 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 200 KALET----SVDI--ITTADFMSRFCSNL 222
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 25 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNL 224
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIVDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNL 224
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 100/199 (50%), Positives = 126/199 (63%), Gaps = 11/199 (5%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG LST+I G
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG--PGRGD 59
Query: 85 TELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
S + K Q R S DR LI AF+ I+ M+DR+ L TI DRAN ++K+V D K
Sbjct: 60 ASFDSFGVSKYQNRRNISSTDRALINAFREINTMADRINLPKTIVDRANNLFKQVHDGKN 119
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE S
Sbjct: 120 LKGRANDAIASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALET----S 174
Query: 203 VEMGTIHASDYLVIFLLNI 221
V++ I +D++ F N+
Sbjct: 175 VDL--ITTADFMSRFCANL 191
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 131/229 (57%), Gaps = 16/229 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS---DHDPVRVGG 61
YC DC R TEVV DH GDTIC++CG+VL+ + +DE EWR+F ++S+ D DP RVG
Sbjct: 11 YCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCRVGS 70
Query: 62 PLNPLLSGGG-LSTVIAKPTAGGSTELLSGSLGK--------LQARSSHPDRNLIQAFKS 112
+P L G G LST I S L PD L+ AF+
Sbjct: 71 AGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMMLDVGGPAPDTALVDAFRG 130
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRGRNQEAIVAACLYIACRQENKPRTVK 170
I+ M+DRLGLV TI+D A + +K++E+ K P R+++A+ AACLY+ACR+E PRT K
Sbjct: 131 IADMADRLGLVATIRDSAKQTFKRLEEAKGCPRGARSRDAVYAACLYVACRKEGMPRTYK 190
Query: 171 EFCSVA--NGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E SV +K+IG+ I K L E GQ +++G + A+ YL F
Sbjct: 191 ELASVTAQGAAARKDIGKMTTHIKKLLGEEDGQVLDIGVVRATSYLRRF 239
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 136/222 (61%), Gaps = 10/222 (4%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA--NESSDHDPVRVGGP 62
YC +C R TEV+ DH+ GDTIC+EC LVL+A+ +DE SEWR FA D DP RVG
Sbjct: 14 YCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRVGAS 73
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSD 118
+P L+ LSTVI +T + + +L ++ R S+ + L+ F+ I+ M+D
Sbjct: 74 GDPFLN-AKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADMAD 132
Query: 119 RLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
RLGLV TI+D A E +KK+ D K RGR ++A+ AACLYIACR PRT KE SV
Sbjct: 133 RLGLVATIRDLAKETFKKLYDAKGSPRGRKRDAVYAACLYIACRNLGMPRTYKELASVTA 192
Query: 178 G--TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
G +KK+IG+ I + L E GQ +++G + ASDYL F
Sbjct: 193 GGAESKKDIGKMTTHIKRLLGEEDGQVMDIGVVSASDYLRRF 234
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + + + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + I D++ F N+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNL 222
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 130/209 (62%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ +V D+ AGD IC ECGLV+ +D SEWR F+NE + DP RVG NPLL+GG L
Sbjct: 49 STLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDL 108
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+T+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N
Sbjct: 109 TTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIIDRTNN 168
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 169 LFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLIL 227
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 228 KALET----SVDL--ITTGDFMSRFCSNL 250
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 60 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLST 119
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 120 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLF 179
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 180 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 238
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 239 LET----SVDL--ITTGDFMSRFCSNL 259
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G L T
Sbjct: 20 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGPENPLLNGSDLCT 79
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I S + L S + + S DR LI AF+ I+AM+DR+ L TI DRAN ++
Sbjct: 80 MIGPGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRINLPKTIVDRANNLF 139
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V D K L+GR +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 140 KQVHDGKNLKGRANDAIASAALYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKA 198
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 199 LET----SVDL--ITTGDFMSRFCSNL 219
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 138/217 (63%), Gaps = 12/217 (5%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC DCK T +V DH GDTICS+CGLVLE+ +DE +EWR F ++++D DP RVG +N
Sbjct: 1 YCKDCKANTYIVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVN 60
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLLS G L T+I+ ++ + Q S+ DR L+Q F I +++RLGLV
Sbjct: 61 PLLSQGNLKTLISNNKG-------DHAIPRWQDGVSNSDRVLLQGFDIIEIIANRLGLVR 113
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IKDRA EI+KK+E+QK R +++I AACL+I+ R+ PRT+ E SV G TKKEI
Sbjct: 114 PIKDRAKEIFKKIEEQKTCVMRKRDSICAACLFISSRENKLPRTLNEISSVVYGVTKKEI 173
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+A + I +H+E E +MGT++ S+ + F N+
Sbjct: 174 NKAVQSIKRHVELE-----DMGTLNPSELVRRFCSNL 205
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 132/222 (59%), Gaps = 35/222 (15%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGG 61
+YC DC+R T VV DH+ GDTIC+EC LVL+A +DETSEWR FAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
+P L P G T + A SS P K I+ M+DRLG
Sbjct: 70 RADPFL-----------PDHVGGTTI---------AYSSAPP-------KGIADMADRLG 102
Query: 122 LVTTIKDRANEIYKKVED--QKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCSVA-- 176
LV TI+DRA E++KK+ + K L RGRN++A+ AACL+IACR E PRT KE SV
Sbjct: 103 LVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAE 162
Query: 177 NGTTKKEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLVIF 217
KKEIGR I KHL + G+++++G + ++DYL F
Sbjct: 163 GAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRF 204
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 IIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ VD +EWR F+NE SD D RVG NPLLSGG LST
Sbjct: 26 LIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAENPLLSGGDLST 85
Query: 75 VIAKPT-AGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+I++P+ + G E S ++ SS DR L+ AF+ I+ M+DR+ L I DR +
Sbjct: 86 MISRPSGSAGFNEDGSAKYHNRRSMSSS-DRALVNAFREITGMADRINLPRNIVDRTQML 144
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V DQK L+GR+ +AI AACLYIACRQE PRT KE C+++ +KKEIGR + I+K
Sbjct: 145 FKQVNDQKSLKGRSNDAISAACLYIACRQEGVPRTFKEICAISR-VSKKEIGRVFKLILK 203
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SVE+ I D++ F N+
Sbjct: 204 ALET----SVEL--ITTGDFMSRFCSNL 225
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 140/221 (63%), Gaps = 13/221 (5%)
Query: 5 YCADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ ++V D++ GD IC ECG+VL VDE SEWR F+N ES+ DP RVGGP
Sbjct: 39 FCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNRVGGP 98
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
NPLL GLSTVI K T+ S+ +L ++Q R + + DR+L+ FK I+ M+D +
Sbjct: 99 TNPLLRDSGLSTVIGKGTSKDSS-----ALSRMQNRGALANGDRSLLAGFKEIARMADHM 153
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T++D ANE++++++D+K ++GR+ + I+AA LYIACR E RT KE C+++N +
Sbjct: 154 GLPQTVQDTANELFREMDDKKSMKGRSADGILAASLYIACRIEGITRTFKEICALSNNVS 213
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KK++GR K ++ + + + I D++ F N+
Sbjct: 214 KKDLGRC----YKMMKEALANRINLQAISTEDFMTRFCTNL 250
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 129/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC +CGLV+ +D SEWR F+NE + DP RVG NPLL+GG L+T
Sbjct: 25 LVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDLTT 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK IS M+DR+ L I DR N ++
Sbjct: 85 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 203
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 204 LET----SVDL--ITTGDFMSRFCSNL 224
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 16 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPLLSNGDLST 75
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 76 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 135
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 136 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 194
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 195 LET----SVDL--ITTGDFMSRFCSNL 215
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 130/207 (62%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I++M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEIASMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 184 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 243
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 244 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 303
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 304 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 362
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 363 LET----SVDL--ITTGDFMSRFCSNL 383
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 31 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 90
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 91 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 150
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 151 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 209
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 210 LET----SVDL--ITTGDFMSRFCSNL 230
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 18 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 77
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 78 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 137
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 138 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 196
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 197 LET----SVDL--ITTGDFMSRFCSNL 217
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 22 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 82 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 142 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 200
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 201 LET----SVDL--ITTGDFMSRFCSNL 221
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 80 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 139
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 140 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 199
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 200 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 258
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 259 LET----SVDL--ITTGDFMSRFCSNL 279
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNL 216
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD +C ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 122 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 181
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 182 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 241
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 242 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 300
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 301 LET----SVDL--ITTGDFMSRFCSNL 321
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 134/208 (64%), Gaps = 8/208 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ ++D SEWR F+N+ D RVG NPLLSG LST
Sbjct: 20 LVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGDSQNPLLSGSDLST 79
Query: 75 VIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+I +P+ GS+ S + ++ DR LI AF+ IS+M+DR+ L I DR+N++
Sbjct: 80 IIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREISSMADRISLPKNIVDRSNKL 139
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V D K LRGR +AI AACLYIACRQE PRT KE C+++ +KKEIGR+ + IVK
Sbjct: 140 FKQVYDSKSLRGRANDAISAACLYIACRQEGVPRTFKEICAISR-ISKKEIGRSFKLIVK 198
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+LE +VE+ I + D++ F N+
Sbjct: 199 NLET----NVEV--ITSGDFMSRFCSNL 220
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 131/209 (62%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ +V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L
Sbjct: 21 STLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDL 80
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+T+I K T S + S + + S DR ++ AFK I++M+DR+ L I DR N
Sbjct: 81 TTMIGKGTGAASFDEFGNSKYQNRRTMSSFDRAMMNAFKEIASMADRINLPRNIVDRTNN 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 141 LFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLIL 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 200 KALET----SVDL--ITTGDFMSRFCSNL 222
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 120/193 (62%), Gaps = 5/193 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C+ CK T +V DH+ GD IC+ECGLV+E+ ++DE SEWR F++ + + DP R G N
Sbjct: 18 CSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTVGATN 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+LSGGGLST I + G + +L +L R +PD+ L+ AF I M+DR+ +
Sbjct: 78 NMLSGGGLSTTIGRNPDG----TFNQTLTRLHNREGNPDKVLMAAFSQIGDMADRMAMNQ 133
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TIK A E+YK V +G++ A+ AACLYIACRQE K RT KE C A G+T KEI
Sbjct: 134 TIKSGACELYKVVTSSHSTQGKSSVAMFAACLYIACRQEGKTRTFKEICGAAVGSTVKEI 193
Query: 185 GRAKEFIVKHLEA 197
GR FI++ E
Sbjct: 194 GRCYRFIIRVCEG 206
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 50 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLTT 109
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 110 MIGKGTGAASFDEFGNSKYQNHRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 169
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 170 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 228
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 229 LET----SVDL--ITTGDFMSRFCSNL 249
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ A D IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 17 LVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNL 216
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIAYACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEM 199
LE +
Sbjct: 202 LETSV 206
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D AGD ICSECGLV+ VD SEWR F+NE+ + DP RVGG N LL+G L+T
Sbjct: 18 LVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAENTLLNGTNLTT 77
Query: 75 VIAKPTAGGSTEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+I T+GG T G++ K + S DR L+ AFK IS M+DR+ L TI DRAN
Sbjct: 78 MIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRINLPRTIVDRANL 137
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +A +ACLYIACRQE PRT KE C+V+ KKEIGR + I+
Sbjct: 138 LFKSVHDGKNLKGHSTDASASACLYIACRQEGVPRTFKEICAVSK-IGKKEIGRCFKLIL 196
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SVE+ I SD++ F N+
Sbjct: 197 KALET----SVEI--IKTSDFMPRFCSNL 219
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G L+T
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLTT 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAIMNAFKEITNMADRINLPRNIVDRTNTLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRCNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNL 216
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS LST
Sbjct: 17 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDRDLST 76
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 77 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 136
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 137 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 195
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 196 LET----SVDL--ITTGDFMSRFCSNL 216
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 132/211 (62%), Gaps = 13/211 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ VD +EWR F+N+ SD DP RVG NPLL GG LST
Sbjct: 24 LVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASENPLLEGGDLST 83
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
+IA T G +E + GK R+ + DR LI AF+ I M DRL L I DRA
Sbjct: 84 MIA--TGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLNLPRMIADRA 141
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
N ++K+V + K L+GR+ +AI +AC+YIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 142 NTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTFKEICAVSK-ISKKEIGRVFKL 200
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
I+K+LE +VE+ I D++ F N+
Sbjct: 201 ILKNLET----NVEL--ITTGDFMSRFCSNL 225
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ VD SEWR F+N+ + DP RVG N LLSG LST
Sbjct: 22 LVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGESENSLLSGSNLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+I KPT G + GS R+ + DR L+ AF+ I+ M+DR+ L TI DR N +
Sbjct: 82 IIGKPT-GNAGFNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINLPKTIVDRTNTL 140
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V +Q+ LRGR+ +AI AACLYIACRQE PRT KE C+++ +KKEIGR + I+K
Sbjct: 141 FKQVHEQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAISR-VSKKEIGRCFKEILK 199
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 200 ALET----SVDL--ITTGDFMSRFCSNL 221
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSE GLV+ VD SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRAMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + I D++ F N+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNL 222
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLL+GG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLTGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDNASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+LE + Q I ++D++ F N++
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLY 213
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+LE + Q I ++D++ F N++
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLY 213
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D AGD IC ECGLV+ +D SEWR F+N+ ++ DP RVG NPLL G LST
Sbjct: 28 LIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENPLLEGNDLST 87
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I S + ++ S +R LI AF+ I AM+DR+ L TI DRA+ ++
Sbjct: 88 IIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRINLPKTIVDRAHTLF 147
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V DQ+ LRGR+ +AI AACLYIACRQE PRT KE C+V+ K+EIGR + I+K
Sbjct: 148 KQVNDQRTLRGRSNDAIAAACLYIACRQEGVPRTFKEICAVSR-VNKREIGRCFKLILKA 206
Query: 195 LEAEM 199
LE +
Sbjct: 207 LETNV 211
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+LE + Q I ++D++ F N++
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLY 213
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I++ A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQENASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D + LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + I++
Sbjct: 132 FKDVLDSRALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIIR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+LE + Q I ++D++ F N++
Sbjct: 191 NLETNLEQ------ITSADFMSRFCGNLY 213
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGGP 62
CA C R T +V DH++GD IC+ECGLV+E+ +DE SEWR F + D DP R G
Sbjct: 24 CAKCARHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADPSRTVGA 83
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
N +L+GGGLST I K G + +L +L R +PD+ LI AF SI +D +G+
Sbjct: 84 TNVMLTGGGLSTTIGKNPDG----TYNATLTRLHNRGMNPDKALISAFHSIGEFADAMGM 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D A ++Y+ V G++ A+ AACLYIA RQE RT KE C A GTT K
Sbjct: 140 NRVVRDGACDLYRMVTSAHSTLGKSNVAMYAACLYIAARQEGMTRTFKEVCGAAQGTTVK 199
Query: 183 EIGRAKEFIVK 193
EIGR +FI+K
Sbjct: 200 EIGRCYKFILK 210
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 127/209 (60%), Gaps = 8/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLL
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLXXX-X 78
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 79 XXXIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 138
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 139 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 197
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 198 KALET----SVDL--ITTADFMCRFCANL 220
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV+
Sbjct: 132 FKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + Q I ++D++ F N+
Sbjct: 191 SLETNLEQ------ITSADFMSRFCGNL 212
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 7/197 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLVIFLLNI 221
+ I D++ F N+
Sbjct: 177 L--ITTGDFMSRFCSNL 191
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 127/208 (61%), Gaps = 8/208 (3%)
Query: 15 VVFDHSAGDTICSEC-GLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+V D+ AGD IC C GL++ +D SEWR F+N+ + DP RVG NPLLS G LS
Sbjct: 23 LVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPLLSNGDLS 82
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
T+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N +
Sbjct: 83 TMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNL 142
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 FKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK 201
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 ALET----SVDL--ITTGDFMSRFCSNL 223
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGGP 62
C C T +V DH++GD IC+ECGLV+E+ +DE SEWR F + D DP R G
Sbjct: 27 CPKCATHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVGA 86
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
N +L+GGGLST I K G + +L +L R +PD+ LI AF SI +D +G+
Sbjct: 87 TNVMLTGGGLSTTIGKNPDG----TYNATLTRLHNRGMNPDKALIAAFHSIGEFADAMGM 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+KD A ++Y+ V G++ A+ AACLYIA RQE RT KE C A GTT K
Sbjct: 143 NRVVKDGACDLYRMVTSAHSTLGKSNAAMYAACLYIAARQEGMTRTFKEVCGAAQGTTVK 202
Query: 183 EIGRAKEFIVK 193
EIGR +FI+K
Sbjct: 203 EIGRCYKFILK 213
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 121/197 (61%), Gaps = 7/197 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLVIFLLNI 221
+ I D++ F N+
Sbjct: 177 L--ITTGDFMSRFCSNL 191
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 121/197 (61%), Gaps = 7/197 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST+I K T S
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ S + + S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+
Sbjct: 62 FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE SV+
Sbjct: 122 GRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVD 176
Query: 205 MGTIHASDYLVIFLLNI 221
+ I D++ F N+
Sbjct: 177 L--ITTGDFMSRFCSNL 191
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 133/208 (63%), Gaps = 8/208 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+SAGD +C ECGLV+ +D SEWR F+NE + DP RVG NPLL+G L+T
Sbjct: 46 LIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASENPLLNGSDLTT 105
Query: 75 VIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
VI K P+ + ++ +L + ++ + DR+L+ AF+ I+ M+DR+ L TI DRA +
Sbjct: 106 VIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRINLPKTIVDRAKVL 165
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+ + K L+GR+ +A+ +A LYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 166 FKQGYELKSLKGRSNDALASASLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKAILK 224
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE +VEM I D++ F N+
Sbjct: 225 ALET----NVEM--ISTQDFMSRFCSNL 246
>gi|357155150|ref|XP_003577025.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 293
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 132/220 (60%), Gaps = 8/220 (3%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSE---WRIFANESSDHDPV 57
M SYC DC T +VFD ++GDTICSECGLVL+++ ++E + + FA++ ++DP
Sbjct: 1 MESSYCKDCNLSTVIVFDRASGDTICSECGLVLDSHYIEEKANPHTFTHFASKDDNYDPF 60
Query: 58 RVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMS 117
VG + L S + I P + G+L K SH N AF I+ M+
Sbjct: 61 CVGDSTSNLESKH--DSTILWPEVFDNRRSFCGNLQKSVDFYSHQSDN---AFNYIADMA 115
Query: 118 DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
DRLG+V +I+ +A IYKK ++ K R + ++ AACLYIACRQ NK RT+KE C+V +
Sbjct: 116 DRLGIVDSIQTQAKNIYKKAKEHKLFNIRKKHSVCAACLYIACRQANKVRTIKEICTVTD 175
Query: 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
G +KKE+ RAK+ +V+H+E G+ +E+ ++ D + F
Sbjct: 176 GVSKKEVSRAKDLLVQHIEGHKGKCMEVNSVLPRDLVRRF 215
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 121/196 (61%), Gaps = 10/196 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPLN 64
C +C T ++ DH GD +C+ECGLVLE +DETSEWR F++ + DP R GP N
Sbjct: 19 CKNCNVPTAIIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPTN 78
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
+L+ GGL T I + G + L+ +L R ++PD+ LI AF I+ ++D LG+ +
Sbjct: 79 RMLAHGGLGTSIGRNPDGTYNQTLT----RLHNRGANPDKALIAAFGKINELADHLGVTS 134
Query: 125 TIKDRANEIYKKVEDQKP---LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+KD A ++Y+ V KP + G++Q A+ AACLYI+CRQE RT KE C A TT
Sbjct: 135 VVKDGACDVYRMV--VKPGVSIAGKSQNAMFAACLYISCRQEGTNRTFKEICGGAVNTTV 192
Query: 182 KEIGRAKEFIVKHLEA 197
KEIG+ +FIVK ++
Sbjct: 193 KEIGKCYKFIVKTIDG 208
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 13/220 (5%)
Query: 6 CADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C CK +VV D++ GD IC CG V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 27 CPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNRVGGPN 86
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
NPLL GGLSTVI K T G +LS ++Q R + DR+L+ AFK I MSD +G
Sbjct: 87 NPLLREGGLSTVIGKGT-GKDASVLS----RMQNRGALGSGDRSLLAAFKEIEKMSDHIG 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T++D A E++++++D+KP++G++ + ++AA LY+ACR + RT KE C+++N +K
Sbjct: 142 LPQTVQDTAKELFRQMDDRKPMKGKSADGMLAASLYMACRIDGIARTFKEVCALSNNVSK 201
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KE+ + K + +G + I D++ F N+
Sbjct: 202 KELAKC----YKQMREALGDVHSLHAISTDDFMTRFCSNL 237
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 124/197 (62%), Gaps = 7/197 (3%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
ICS CGLV+ +D SEWR F+NE + D RVG NPLL G LST+I+ T S
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 85 TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + + + + + DR+++ AFK I+ MSDRL L I DRAN ++K+V + K L+
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMIMDRANTLFKQVHEGKSLK 121
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGRA + I+K+LE SVE
Sbjct: 122 GRSNDAIASACLYIACRQEQVPRTFKEICAVSK-ISKKEIGRAFKLILKNLET----SVE 176
Query: 205 MGTIHASDYLVIFLLNI 221
+ I D++ F N+
Sbjct: 177 L--ITTGDFMSRFCSNL 191
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 124/208 (59%), Gaps = 11/208 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 162 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 221
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q ++ ++ DR + Q I MS R+ L +I+D A +I
Sbjct: 222 SIAVGFGGSESDY---SLANAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKI 278
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR + I+K
Sbjct: 279 FKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIK 337
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + Q I ++D++ F N+
Sbjct: 338 SLETSLEQ------ITSADFMSRFCGNL 359
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 125/213 (58%), Gaps = 13/213 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 13 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 72
Query: 75 VIAKPTAGGSTEL-----LSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
IA G ++ L SL Q ++ ++ DR + Q I MS R+ L +I+D
Sbjct: 73 SIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIED 132
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +I+K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR
Sbjct: 133 GAAKIFKDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCF 191
Query: 189 EFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+ I+K LE + Q I ++D++ F N+
Sbjct: 192 KLIIKSLETSLEQ------ITSADFMSRFCGNL 218
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 7/218 (3%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS--DHDPVRVGGP 62
YC +C R T VV DH+ GDTIC+EC LVLE +DETSEWR F++ S D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P LS L TV+A P + + S ++ ++S D +L AF++IS M+DRL L
Sbjct: 71 SDPFLSHAELGTVVA-PAKRQAKDTASPPHVRVDSKSGQ-DSSLAVAFRAISDMADRLQL 128
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK--PRTVKEFCSVANG-T 179
V TI+DRA E++KK+E+ K R + PRT+KE SV
Sbjct: 129 VATIRDRAKELFKKMEEAKLCARVRNRRRPRTRPASTSRAATRATPRTLKELASVMRDCQ 188
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + I +HL E G ++EMG + A+DY+ F
Sbjct: 189 DKKEIGRMERIIRRHLGEEAGTAMEMGVVRAADYMSRF 226
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 128/209 (61%), Gaps = 9/209 (4%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVGGPLNPLLSGGGL 72
++ D+ AGD ICSECGLV+ +D SEWR F+N+ ++ DP RVGG NPLL+G L
Sbjct: 16 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPSRVGGAENPLLNGSDL 75
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST++ S + G K + +R+L+ A++ I M+DR+ L I DRAN
Sbjct: 76 STLVGPSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMADRINLPRNIVDRANV 135
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +AI +A LYIACRQE PRT KE C+V+ +KKEIGR + I+
Sbjct: 136 LFKQVHDGKNLKGRSNDAIASASLYIACRQEGVPRTFKEICAVSK-VSKKEIGRVFKLIL 194
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I D++ F N+
Sbjct: 195 KALET----SVDL--ITTGDFMSRFCCNL 217
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/207 (44%), Positives = 119/207 (57%), Gaps = 14/207 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V DH AGD IC ECGLV+ VD +EWR F+NE S DP RVG P NPLL LST
Sbjct: 23 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
IA G T ++ + DR + Q I MS R+ L +I+D A +I+
Sbjct: 83 SIAVGFGGSETNAQRKNMNNM-------DRQMSQGLSVIREMSARIHLPKSIEDGAAKIF 135
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K V D K LRG+N EA AACLYIACR+E PRT KE C+ A+ +KKEIGR + I+K
Sbjct: 136 KDVLDSKALRGKNNEAQAAACLYIACRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIKS 194
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + Q I ++D++ F N+
Sbjct: 195 LETSLEQ------ITSADFMSRFCGNL 215
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 122/198 (61%), Gaps = 3/198 (1%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGG 61
+ CADC ++ V DH+ GD +C+ CGLV E++ +DE+SEWR F ++ D DP RVGG
Sbjct: 9 EQTCADCGS-SDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGG 67
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P N LL+ G LSTVI PT G S L+ +L + A+ S+PD+ L++AF IS + + LG
Sbjct: 68 PTNHLLTNG-LSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALG 126
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L KDR NE++K +++ +RG+ A+ AA IACRQ PRT KE +V +
Sbjct: 127 LNRACKDRGNELFKNTWEKRGIRGKGIAAVCAAVTLIACRQVGFPRTFKEMEAVIADGSI 186
Query: 182 KEIGRAKEFIVKHLEAEM 199
K+I R I K L+ +M
Sbjct: 187 KDIKRCYRLITKQLDEKM 204
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 132/217 (60%), Gaps = 15/217 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ +++ D++ GD IC ECG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 47 WCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 106
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST I K GS + S SL +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 107 INPLLRDSALSTTIGK----GSRD--SSSLNRLQNKSALGTGDRNLLAAFKEIGRMADHM 160
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 161 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 219
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEI R K ++ + + TI D+ F
Sbjct: 220 KKEISRC----YKIMKETFSSVLNLQTISTEDFTSRF 252
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 103/162 (63%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F NE + DP RVG NPLL+GG LST
Sbjct: 25 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPLLNGGDLST 84
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I+K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 85 MISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRNIIDRTNNLF 144
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
K+V +QK L+GR +AI +ACLYIACRQE PRT KE +A
Sbjct: 145 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEIGDIA 186
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 116/194 (59%), Gaps = 10/194 (5%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C DC+ + D G +C+ CG ++E +DE +EWR F + S +DP RVGGP N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVGGPNN 68
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
PLL L T+IA L S +L + Q +S+ P+R LI F ISA DR +
Sbjct: 69 PLLGTEPLDTMIA-----NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNI 123
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI DRA I+K+V+++K L+G+N E +VAAC+YIACRQE PRT KE SV KK
Sbjct: 124 SKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKK 182
Query: 183 EIGRAKEFIVKHLE 196
EIGR+ + I H+E
Sbjct: 183 EIGRSFKLIFPHIE 196
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 101/154 (65%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD ICSECGLV+ +D SEWR F+NE + DP RVGGP NPLL+G LST
Sbjct: 22 LIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLNGSDLST 81
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I T S + S + + S DR LI AF+ I+ M+DR+ L TI DRAN ++
Sbjct: 82 MIGPGTGAASFDAFGASKYQNRRTMSSSDRALINAFREINGMADRINLPKTIVDRANNLF 141
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
K+V D K L+GR +AI +ACLYIACRQE PRT
Sbjct: 142 KQVHDGKNLKGRANDAIASACLYIACRQEGVPRT 175
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 134/217 (61%), Gaps = 15/217 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST + K GS + SG+L +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGK----GSKD--SGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 136 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 194
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEI R K ++ + + TI + D+ F
Sbjct: 195 KKEISRC----YKIMKETFASVLNLQTISSEDFTSRF 227
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 124/208 (59%), Gaps = 8/208 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ AGD +C ECGLV+ +D SEWR F+NE + D RVG NPLL G LS+
Sbjct: 30 LIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPLLDGHELSS 89
Query: 75 VIAKPTAGGSTELLSGSLGKL-QARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA T T S K ++ S D++L+ AFK I+ M+DRL L +I DR N +
Sbjct: 90 FIAPVTGRPGTNDSGKSFPKFSKSGVSAGDKSLMTAFKEIANMADRLNLPRSIVDRGNAL 149
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V D+K L+GR +A+ AACLYIACRQE+ PR+ KE C+V+ +KKEIGR + I
Sbjct: 150 FKQVNDEKTLKGRANDAVAAACLYIACRQEDVPRSFKEICAVSR-HSKKEIGRCFKLI-- 206
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+ M T+ +D++ + N+
Sbjct: 207 ----RQAANPAMNTVSTTDFMSRYCTNL 230
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/188 (46%), Positives = 119/188 (63%), Gaps = 8/188 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRV 59
M +C C+ V F S GD +C +CG V E+ +DE SEWR F+++ D DP RV
Sbjct: 1 MDTEFCITCRGDDFVEF-KSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRV 59
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDR 119
GGP N LL G L+T I + G LS +L ++ AR+++PDR L+ AFK + M D
Sbjct: 60 GGPTNHLLEG--LTTTIGRERNDGG---LSYALNRIHARTNNPDRLLVNAFKEVGRMCDL 114
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS-VANG 178
LG+ +KDRA EIYK+V + K L+GR+ +A+ A+CL+ ACRQE +PRT KE S + N
Sbjct: 115 LGVRGAVKDRACEIYKEVVEAKSLKGRSVKALAASCLFWACRQEKQPRTFKEIVSCLGND 174
Query: 179 TTKKEIGR 186
+KKEIGR
Sbjct: 175 VSKKEIGR 182
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 115/194 (59%), Gaps = 10/194 (5%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C DC+ + D G +C+ CG ++E +DE +EWR F + S +DP RVG P N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTF--DDSANDPSRVGCPNN 68
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
PLL L T+IA L S +L + Q +S+ P+R LI F ISA DR +
Sbjct: 69 PLLESEPLDTMIA-----NIGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDRSNI 123
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI DRA I+K+V+++K L+G+N E +VAAC+YIACRQE PRT KE SV KK
Sbjct: 124 SKTISDRAKLIFKRVDEKKILKGKNLEGVVAACIYIACRQEQSPRTFKEV-SVLTAVPKK 182
Query: 183 EIGRAKEFIVKHLE 196
EIGR+ + I H+E
Sbjct: 183 EIGRSFKLIFPHIE 196
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 129/215 (60%), Gaps = 13/215 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D AGD +CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST
Sbjct: 14 LIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLST 73
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
+I+ P+ S +L GK R+ S PDR L+ AF+ IS M + L L +I D A
Sbjct: 74 MISGPSPSDSRQL--DEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHA 131
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
N ++K+V + K LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ +
Sbjct: 132 NLLFKQVHETKNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKK 190
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNF 225
I+K LE + QSV + D++ F N+ N
Sbjct: 191 ILKILETNV-QSVTV-----EDFMSRFCGNLNLNI 219
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 11/193 (5%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK +V + S+GDT+C CGLV+ VD SEWR FAN+ + RVG N
Sbjct: 24 CPDCKEDPPNLVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSAN 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGL 122
PLL+G L T+I+ G L K Q RS +RNL+ A++ ISAM D + L
Sbjct: 84 PLLNGSQLDTIISTQDGGHG-------LSKTQGRSVVQKGERNLMSAYREISAMCDAIHL 136
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+I D A +++K+V+D K L+GR+ E+I++AC++IACRQ PRT KE C++ N KK
Sbjct: 137 PKSISDIAKQVFKRVDDSKALKGRSNESIISACIFIACRQGKAPRTFKEICTLTN-VPKK 195
Query: 183 EIGRAKEFIVKHL 195
EIGR + + K L
Sbjct: 196 EIGRVFKSLQKML 208
>gi|414872963|tpg|DAA51520.1| TPA: hypothetical protein ZEAMMB73_142786, partial [Zea mays]
Length = 98
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DSYC DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR F NES+D+DPVRVG
Sbjct: 1 MSDSYCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFTNESNDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR 98
GP NPLL+ GGLSTVIAKP G + LS SLG+ Q R
Sbjct: 61 GPSNPLLTDGGLSTVIAKPN-GAQGDFLSSSLGRWQNR 97
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 124/210 (59%), Gaps = 18/210 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL VD SEWR F+N + ++ DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ ST+ L K Q RS ++NL+ A+K ISAM D +
Sbjct: 80 NPLLNGSQLDTSIS------STDGTGAMLAKAQGRSVQVRGEKNLLTAYKEISAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A +++K+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLFKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VAK 192
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS 211
KEIGR + + + L E G +H S
Sbjct: 193 KEIGRVYKTLQRML-------TEGGALHNS 215
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 11/209 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P +P LSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPYLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ +L Q ++ ++ DR + A I MS+R+ L I++ A +
Sbjct: 75 SIAVGFGGSDSD---NTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLPRNIQESAFRM 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K+V D LRG+N EA AACLYIACRQ+ PRT KE C+++ +KKEIGR + IV+
Sbjct: 132 FKEVLDSGVLRGKNIEAQAAACLYIACRQDGVPRTFKEICAISR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+ S + + ++D++ F N++
Sbjct: 191 N------SSTNLEHVTSADFMSRFCGNLY 213
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 122/227 (53%), Gaps = 10/227 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T +V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL----QARSSHPDRNLIQAFKSIS 114
VG NP L G L T+I KP S+ L + L +H + + QAF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVE---DQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L I RA EI K + + K RG+ AI AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEA-EMGQSVEMGTIHASDYLVIF 217
VANG KK+I + I + LE+ + S I+ D + F
Sbjct: 181 IAEVANGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGDLVRRF 227
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 26 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 85
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 86 TMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLY 145
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F
Sbjct: 146 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 198
Query: 218 LLNI 221
N+
Sbjct: 199 CSNL 202
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T +V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL----QARSSHPDRNLIQAFKSIS 114
VG NP L G L T+I KP S+ L + L +H + + QAF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKVE---DQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L I RA EI K + + K RG+ AI AA + ACR+ RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEA 197
VANG KK+I + I + LE+
Sbjct: 181 IAEVANGVDKKDIRKESLVIKRVLES 206
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 6 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 65
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AF+ I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 66 TMSSSDRAMMNAFREITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLY 125
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F
Sbjct: 126 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 178
Query: 218 LLNI 221
N+
Sbjct: 179 CSNL 182
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 38 VDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQA 97
+D SEWR F+N+ + DP RVG NPLLS G LST+I K T S + S + +
Sbjct: 28 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRR 87
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
S DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLY
Sbjct: 88 TMSSSDRAMMNAFKEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLY 147
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
IACRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F
Sbjct: 148 IACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRF 200
Query: 218 LLNI 221
N+
Sbjct: 201 CSNL 204
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 18/210 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ G+ L K Q RS ++NL+ A+K I AM D +
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAM------LAKAQGRSVQVRGEKNLLTAYKEIGAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPK 192
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS 211
KEIGR + + + L E G +H S
Sbjct: 193 KEIGRVYKTLQRML-------TEGGALHNS 215
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 5/181 (2%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG--LSTV 75
D+ AGD IC+ECGLV+ +D SEWR F+N+S D RVG N LS G LST+
Sbjct: 24 DYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDVENRFLSNSGSDLSTM 83
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
IA PT G T +L + + DR L A++ I AM+DR+ ++ DRA +K
Sbjct: 84 IAAPTNGAETAF--SNLSHHRRHMNAADRALSAAYREIGAMADRMNFPGSLVDRAKVNFK 141
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ + + L+GR+ +AI AACLYIACRQE PRT KE C+V KKEIGR + I+K L
Sbjct: 142 EAYESRQLKGRSNDAIAAACLYIACRQEGVPRTFKEICAVCT-VPKKEIGRCFKLIIKTL 200
Query: 196 E 196
E
Sbjct: 201 E 201
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 118/203 (58%), Gaps = 9/203 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG NPL G LST+I+ P+
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 TEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
L L + + S PDR LI AF+ IS M++RL L TI DRAN ++K+V + +
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLNLPKTISDRANLLFKQVYETRN 121
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+ LE
Sbjct: 122 LRGRSNDAVSTACLYMACRQEKVPRTFKEVCAVSK-VSKKEIGKVFKKILNILE------ 174
Query: 203 VEMGTIHASDYLVIFLLNIFKNF 225
+ + D++ F N+ N
Sbjct: 175 TNVQAVSVDDFMSRFCANLHLNI 197
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---QARSSHPDRNLI-QAFKSIS 114
VG P NPLL G L TVI KP S+ + + L Q + + + +LI +AF+ I
Sbjct: 61 VGAPTNPLLKSGNLVTVIEKPKENVSSVVSKDDISTLCRTQNQVKNHEEDLIKKAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKV---EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RMTDALYLNIAVNSRACEIVSKFGGHANTKLRRGKKLYAVCAASVSMACRELKLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
VANG K+I ++ I + LE++
Sbjct: 181 IAMVANGVELKDIRKSSMVIKRVLESDQA 209
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 131/222 (59%), Gaps = 9/222 (4%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE--SSDHDPVRVG 60
+ C DC + ++ V DH++GD +C CG+V+EA+ +DE SEWR FA++ S DP RVG
Sbjct: 13 EQQCPDCGQ-SDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVG 71
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS-HPDRNLIQAFKSISAMSDR 119
GP+N LLS GG+ST+I G L+ + G A DR +I AF+ I +
Sbjct: 72 GPVNHLLSDGGMSTMIGG-GKGVDHALVREAGGCWPAGDGVTTDRAVIAAFREIGKICAA 130
Query: 120 LGLVTTIKDRANEIYKKVEDQ-KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L+ T+K +A E YK+ D K ++G++Q A++AA +++ACR PRT KE C+V
Sbjct: 131 MKLLDTVKKQAEEFYKQAYDNAKSIKGKSQAAVLAAIVFLACRHTGNPRTFKEICAVVPQ 190
Query: 179 TTKKEIGRAKEFIVKHLEAE--MGQSVEMGTIHASDYLVIFL 218
+ KEIGR + +V+ L+ E +G G+ H Y+ F+
Sbjct: 191 ASVKEIGRIYKSVVRELKLEEALGNKQLEGS-HPHSYMRRFM 231
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES--SDHDPVR 58
M + C DCKR T V DHS+GDTICSECGLVLEA+ ++ + EWR FA++ SD DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---QARSSHPDRNLI-QAFKSIS 114
VG P NPLL G L TVI KP S+ + L L Q + + + +LI +AF+ I
Sbjct: 61 VGAPTNPLLKSGDLVTVIEKPKENISSVVSKDDLSTLCRAQNQLKNHEEDLIKKAFEEIQ 120
Query: 115 AMSDRLGLVTTIKDRANEIYKKV---EDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++D L L + RA EI K + K RG+ A+ AA + +ACR+ RT+KE
Sbjct: 121 RITDALYLDIVVHSRACEIVSKFGGHANTKLRRGKTLYAVCAASVSMACRELKLSRTLKE 180
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
VANG K+I ++ I + LE++
Sbjct: 181 IAMVANGVELKDIRKSSMVIKRVLESDQA 209
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 123/205 (60%), Gaps = 13/205 (6%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 TELLSGSLGKLQARS----SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
+L GK R+ S PDR L+ AF+ IS M + L L +I D AN ++K+V +
Sbjct: 62 RQL--DEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHET 119
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
K LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE +
Sbjct: 120 KNLRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV- 177
Query: 201 QSVEMGTIHASDYLVIFLLNIFKNF 225
QSV + D++ F N+ N
Sbjct: 178 QSVTV-----EDFMSRFCGNLNLNI 197
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 121/203 (59%), Gaps = 9/203 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG N LL GG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 TELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
+L + R S PDR L+ AF+ IS M + L L +I D AN ++K+V + K
Sbjct: 62 RQLDENGKPMYRNRRNMSAPDRVLLSAFREISQMGEHLNLPKSISDHANLLFKQVHETKN 121
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE + QS
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV-QS 179
Query: 203 VEMGTIHASDYLVIFLLNIFKNF 225
V + D++ F N+ N
Sbjct: 180 VTV-----EDFMSRFCGNLNLNI 197
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 112/201 (55%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CTDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTIIS--TGGGMNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR + I HLE S E
Sbjct: 187 IGRCFKLISPHLERMATMSTE 207
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 120/210 (57%), Gaps = 31/210 (14%)
Query: 13 TEVVFDHSAGDTICSECGLVL-EAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG 71
+ ++ D+ AGD ICSECGLV+ +A+ GGP NPLLSGG
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDAF-----------------------GGPENPLLSGGH 56
Query: 72 LSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LST+I T S + + DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 57 LSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRAN 116
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 117 TLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLT 175
Query: 192 VKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+K LE SV++ I +D++ F N+
Sbjct: 176 LKALET----SVDL--ITTADFMCRFCANL 199
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC ++ D+ G +C CG V+ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGGMNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR + I HLE S E
Sbjct: 187 IGRCFKLISPHLERMATMSTE 207
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 114/201 (56%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + S L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR + I HLE S E
Sbjct: 187 IGRCFKLISPHLERMATMSTE 207
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC ++ D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGGVNSYM---LSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACMYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR + I HLE S E
Sbjct: 187 IGRCFKLISPHLERMATMSTE 207
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 122/203 (60%), Gaps = 9/203 (4%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+CS CGLV+ +D SEWR F+N+++ D RVG NPLLSG LST+I+ P+ S
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 TEL--LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
++ +L K + S DR L AF+ I M++ L L +I D AN ++K+V + K
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHLNLPKSISDHANLLFKQVYETKN 121
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
LRGR+ +A+ ACLY+ACRQE PRT KE C+V+ +KKEIG+ + I+K LE + QS
Sbjct: 122 LRGRSNDAVSTACLYMACRQEGVPRTFKEVCAVSR-VSKKEIGKVFKKILKILETNV-QS 179
Query: 203 VEMGTIHASDYLVIFLLNIFKNF 225
V + D++ F N+ N
Sbjct: 180 VTV-----EDFMSRFCGNLNLNI 197
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 8/212 (3%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
+D+ + D IC ECGLV+E D SEWR F+ E+ + DP ++G N LL G L+T+
Sbjct: 25 YDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTMF 84
Query: 77 AKPTAGGSTEL--LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+GG + L G++G+ + R S D+ L+ A+ IS M+ + L T+ DRAN
Sbjct: 85 GPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +AI + CLYIACRQE PRT KE C++ KKE+GR + I
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK-IDKKELGRCYKLIP 203
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
K LE + + I SD++ + LN+ N
Sbjct: 204 KALETSVDV---IPRITTSDFIPLQNLNLELN 232
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 107/194 (55%), Gaps = 9/194 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ DH +G +C CG+VL +DETSEWR F +S DP RVG NP
Sbjct: 14 CTDCGETQNIIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNF-EDSHKSDPSRVGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L T+I +AG + S +L K+Q ++ P R L I A +R +
Sbjct: 73 FLDSEQLDTMI---SAGKG--MNSHTLSKIQMKNYMRGPKRALKNGLNLIQAFCERSNIC 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA I+K VE QK L+G+N E V ACLYIAC+ EN PRT KE SV G K+E
Sbjct: 128 KTICDRAQHIFKMVESQKLLKGKNLEGSVGACLYIACKLENAPRTFKEI-SVITGVQKRE 186
Query: 184 IGRAKEFIVKHLEA 197
IGR + I K ++
Sbjct: 187 IGRCYKLIAKDVDT 200
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 111/182 (60%), Gaps = 3/182 (1%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ ++ + +GD +C CGLVL VD SEWR FAN+ D DP RVGGP +
Sbjct: 30 CPDCRDPNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGGPSD 88
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL G G I GGS +A+++ +RNL+ AF+ IS+ D+ L
Sbjct: 89 PLLEGIGQLDTIISFRDGGSGMARELQRAASRAQNTRSERNLLSAFRDISSWCDQFSLPK 148
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK +
Sbjct: 149 TISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKVL 207
Query: 185 GR 186
G+
Sbjct: 208 GQ 209
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 15/242 (6%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DC+ E+ DH++GD IC CGLVL+ S+D +SEWR F+N+ + DP RVG
Sbjct: 33 CRDCREDPPELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N LL+G L+T IA G + S L + Q +++H N L+QA+K I A+ D
Sbjct: 93 NALLNGAQLNTNIAFGDGG----MRSKELHRAQNKANHDKSNKLLLQAYKQIGALCDGWA 148
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ + A IYK ++ + +G++QEA++A C++IACR+ N PRT +E + + +K
Sbjct: 149 LPYTVSESAKHIYKDADESRLFKGKSQEALIAGCVFIACRRNNVPRTFREAMELTS-VSK 207
Query: 182 KEIGRAKEFIVKHL-EAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLDFSSCMIFC 240
KEIGR + + L + G++ G+ A++ V++ +K D C FC
Sbjct: 208 KEIGRTFKLLENFLMNKDKGKNA--GSDAAANGAVVY-NEAYKGSATADPADL--CQRFC 262
Query: 241 SL 242
S+
Sbjct: 263 SM 264
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK+ ++ D+ G +C CG ++ + +DE EWR F++ S +P RVGGP NP
Sbjct: 15 CPDCKKEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 73 FLDTEQLDTLISSGSG-----LASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 128 KTISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKE 186
Query: 184 IGRAKEFIVKHLE 196
IGR + I H++
Sbjct: 187 IGRCYKAIFPHID 199
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK ++ D+ G +C CG ++ + +DE EWR F++ S +P RVGGP NP
Sbjct: 15 CPDCKEEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 73 FLDTEQLDTLISSGSG-----LASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 128 KTISDAAKYVFKTVENKKVLKGKNLEGIAAACIYIACRQAGFVRTFKEV-SILTAVPKKE 186
Query: 184 IGRAKEFIVKHLE 196
IGR + I H++
Sbjct: 187 IGRCYKAIFPHID 199
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 133/242 (54%), Gaps = 32/242 (13%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES----SDHDPVRVG 60
YC C+R+T V + ++GDT+C+EC LVL+ VDE+ EWR F N +D P +
Sbjct: 11 YCKGCRRVTTVTVNPASGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHID 70
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGS-TEL---------LSGSLGKLQARSSHPDRNLIQAF 110
+ L+ L T +A P G + T++ + G A ++ P+R L +AF
Sbjct: 71 ---DHFLTNLQLGTAVAGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAF 127
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRG--RNQEAIVAACLYIACRQENKP 166
+++ M++RLGL T +KDRA E+ +K+ED K P G RN+ A+ AACL++ACR E P
Sbjct: 128 QAMDGMAERLGLATAVKDRAKEVLRKLEDAKAFPKGGKCRNRLALYAACLHVACRAEGTP 187
Query: 167 RTVKEFCSVANGTTK---KEIGRAKEFIVKHLE-----AEMGQ--SVEMGT-IHASDYLV 215
T KE SV + K+IGR + I HLE AE Q ++EMG + A DYL
Sbjct: 188 LTFKELASVTGDSVTAGMKDIGRLVKHIRNHLEDQDQDAEGTQAATLEMGAVVRAGDYLC 247
Query: 216 IF 217
F
Sbjct: 248 RF 249
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKECKEFPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDGA 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + L + Q +S+H +NL+ A+K I A D +G
Sbjct: 85 NPLLNGSQLSTTIAFGDGSGRSR----DLQRAQNKSAHDKGTKNLLAAYKEIGAHCDAIG 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ T D A ++K V+D K +G++QEA++A C++IACRQ PRT +E ++ +K
Sbjct: 141 IPKTGADVAKHLFKMVDDAKAFKGKSQEALIAGCIFIACRQSGVPRTFREIYALTK-VSK 199
Query: 182 KEIGR 186
K+IGR
Sbjct: 200 KDIGR 204
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK ++ D+ G +C CG V+ + +DE EWR F++ S +P RVGGP NP
Sbjct: 11 CPDCKEEENIIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFSD--SGENPSRVGGPNNP 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + L S SL K Q +SS P+R LI I+A +R L
Sbjct: 69 FLDTEQLDTLISSGSG-----LASYSLAKTQMKSSLRGPERALINGLNLITAFCERKNLS 123
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++K VE++K L+G+N E I AAC+YIACRQ RT KE S+ KKE
Sbjct: 124 KTISDAAKYVFKTVENKKVLKGKNLEGIGAACIYIACRQAGFVRTFKEV-SILTAVPKKE 182
Query: 184 IGRAKEFIVKHLE 196
IGR + I H++
Sbjct: 183 IGRCYKAIFPHID 195
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 8/222 (3%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
+D+ + D IC+ECG+V++ D SEWR F+ E+ + DP ++G N LL G L+T+
Sbjct: 25 YDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTIF 84
Query: 77 AKPTAGGSTEL-LSG-SLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
T+GG + + SG +LG+ + R S D+ L+ A+ IS M+ + L T+ DRAN
Sbjct: 85 GPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAVNINLPRTVVDRANC 144
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K V D K L+G + +AI + CLYIACRQE PRT KE C++ KKE+GR + I
Sbjct: 145 LFKNVHDGKHLKGHSTKAIASTCLYIACRQEGVPRTFKEICALTK-IDKKELGRCYKLIP 203
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLDFS 234
K LE + + I SD++ F N+ + L+ S
Sbjct: 204 KALETSVDV---IPRITTSDFIPRFCSNLGMQLTKVIFLNVS 242
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 125/210 (59%), Gaps = 9/210 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG ++
Sbjct: 31 CPDCRDPSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
PL+ G L T I+ G L+ L + +R +S +RNL+QAF+ IS+ D+
Sbjct: 90 PLMEGVEQLDTTISFKDGGSG---LARELQRAASRGSASRSERNLLQAFRDISSWCDQFS 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACR+ + PRT +E C++ + +K
Sbjct: 147 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHVPRTFREICNLTH-VSK 205
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS 211
K +G+ + + + G S + T A+
Sbjct: 206 KVLGQCYKQLEQAFNLTPGASADRQTSSAT 235
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 124/220 (56%), Gaps = 11/220 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L T I+ GGS +A SS +RNL+QAF+ IS D+ L
Sbjct: 90 PLMEGIEQLDTTISF-KDGGSGLARELQRAASRANSSRSERNLLQAFRDISNWCDQFSLP 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 207
Query: 184 IGRAKEFIVKHLEAEMGQSVEM------GTIHASDYLVIF 217
+G+ + + + G S + GT A D LV +
Sbjct: 208 LGQCYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRY 247
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ T ++ + +GD +C CGLVL +D SEWR FAN+ D DP RVG +
Sbjct: 20 CPECREATPDIREEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAATD 78
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PLL G L TVI+ GGS +A+ S +RN++ AF+ IS D+ L
Sbjct: 79 PLLEGIEQLDTVISF-RDGGSGVARELQRAATRAQGSRSERNILTAFRDISTRCDQFALP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+V D+ L+G+ QEAI AAC++IACRQ + PRT +EFC + + +KK
Sbjct: 138 KTISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTH-VSKKL 196
Query: 184 IG 185
+G
Sbjct: 197 LG 198
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 9/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK ++V + ++GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPECKDPNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGG--STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PL+ G L TVI+ G S EL + +A+SS +RNL+ AF+ IS D+
Sbjct: 91 PLMDGMEQLDTVISFRDGGSGISRELQRAAS---RAQSSRTERNLLTAFRDISNWCDQFS 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PR+ K+ CS+ + +K
Sbjct: 148 LPKTISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVPRSFKDICSLTH-VSK 206
Query: 182 KEIGR 186
K +G+
Sbjct: 207 KMLGQ 211
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C DCK + +V D SAGD IC CGL+L +D SEWR F+N + + DP RVG
Sbjct: 32 CRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSNSDDNSGDPSRVGAAS 91
Query: 64 NPLL-SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+P+L S G + + I GG+ L+ + L+QAFK I AM +R+ L
Sbjct: 92 DPILGSKGTIDSTIIGVRDGGTGRSRELHRAHLKVIGQKGEVALLQAFKVIQAMGERISL 151
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A +++KK +D++ L+ + EAI+AACLYIACR+ + RT +E C+++ +KK
Sbjct: 152 SKIVIDSAKQLFKKADDERLLKSKPTEAIIAACLYIACREHSVTRTFREICALSK-VSKK 210
Query: 183 EIGRAKEFIVKHLEAEMGQ 201
EIGR + + ++E + Q
Sbjct: 211 EIGRCYKALQPNMEHPVQQ 229
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 10/213 (4%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK + ++ + S+GDT+C CGLVL A VD SEWR F+N+ + DP RVG
Sbjct: 31 CPDCKEQPPNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGDDPSRVGDAA 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
NPLL+G L+T I+ S EL + + ++ + +++L+QA+K I DR L
Sbjct: 91 NPLLNGSQLATNISYTDGAKSREL---NRAQNKSGTDKSNKSLMQAYKLIGQWCDRWLLP 147
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+ D A +YK +D K +G+ E+IVA CL++ACRQ + R+ +E + G +KKE
Sbjct: 148 HTVSDTAKHMYKMTDDSKGFKGKALESIVAGCLFLACRQAQQGRSFRELHEL-TGVSKKE 206
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVI 216
IGR I K L+ G I + LV+
Sbjct: 207 IGR----IFKSLDKFFNAQNRSGNILGNGGLVM 235
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D+ AG +CS CG V+ +DE SEWR F++ ++ + RVG NP
Sbjct: 8 CKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFSDANAP-NLSRVGSANNP 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
LL T+I+ + +L K Q RSS P++ LI F ISA+ DR +
Sbjct: 67 LLDAETYDTIISTERSS-----FGVNLSKTQMRSSMRGPEQALINGFNLISALCDRANMT 121
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA +K VE++K + ++ + VAAC+YIACRQE PRT KE SV +K+
Sbjct: 122 KTICDRAKFNFKAVEEKKIAKSKSHKGTVAACIYIACRQEGCPRTFKEI-SVLTAVPRKD 180
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGRA + I HLE + SV+
Sbjct: 181 IGRAYKIIYPHLEKFVAVSVK 201
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 7/160 (4%)
Query: 29 CGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTEL 87
CG V E+ +DE SEWR F+++ D DP RVGGP N LL G L+T I + G
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLEG--LTTTIGRERNDGG--- 59
Query: 88 LSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRN 147
LS +L ++ AR+++PDR ++ A K + M + L + T+KDRA EIYK+V + K L+GR+
Sbjct: 60 LSYTLNRIHARTNNPDRVIMAAMKEVGRMCELLKVNGTVKDRALEIYKEVVEAKTLKGRS 119
Query: 148 QEAIVAACLYIACRQENKPRTVKEFCSV-ANGTTKKEIGR 186
+A+ A+CL+ ACRQE + RT K+ +V N +KKEIGR
Sbjct: 120 VKALAASCLFWACRQEKQARTFKQIVAVLGNDVSKKEIGR 159
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 119/211 (56%), Gaps = 12/211 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLVL ++D SEWR F+N+ + DP RVG
Sbjct: 37 CKDCKEFPPNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDSA 96
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ + GGS + L + Q + +H ++L+ A+K I A D
Sbjct: 97 NPLLNGNQLDTGISF-SDGGSGR--ARDLHRAQNKVTHDKSTKSLLAAYKEIGAFCDSTN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A ++YK V+D K +G+ QE I+A C++IACR+ N PRT +E ++ K
Sbjct: 154 LQKNVADTAKQLYKSVDDAKAFKGKPQEVIIAGCIFIACRKCNVPRTFREIFAITK-VPK 212
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTI 208
KEIGR ++F + EA + + V G I
Sbjct: 213 KEIGRVFKALEKFFSQQGEATVAEIVSGGGI 243
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 113/189 (59%), Gaps = 3/189 (1%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ ++ + +GD +C CGL+L VD SEWR FAN+ D DP RVG ++
Sbjct: 32 CPECRDPNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 90
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PL+ G + GGS +++++ +RN++QAF+ IS+ D+ L
Sbjct: 91 PLMEGMEQMDTVISYKDGGSGVARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSLPK 150
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TI D A ++YK+ +++K LRG++ +A++AAC++IACRQ + PRT +E C++ + KK +
Sbjct: 151 TISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQAHVPRTFREMCTLTH-VPKKTL 209
Query: 185 GRAKEFIVK 193
G+ + + K
Sbjct: 210 GQCYKTLEK 218
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 33/170 (19%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E++ DH AGD IC ECGLV+ VD +SEWR F+++S+ DP RVG P N L+SGGGL+
Sbjct: 13 ELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGSPENNLMSGGGLA 72
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
T IA GGS E S SL LQ R + D+AN +
Sbjct: 73 TSIA---GGGSDE--SRSLSNLQKRQA---------------------------DQANLL 100
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+V++ K L+G+N +A+ +ACLYIACR++ PRT KE C+V+ +KKE
Sbjct: 101 FKQVQETKALKGKNNDAVASACLYIACRKDGVPRTFKEICAVSK-LSKKE 149
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 116/184 (63%), Gaps = 8/184 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + +V + ++GD +C +CGLVL +D SEWR FAN+ D DP RVG N
Sbjct: 33 CPDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAAN 91
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGL 122
PLL G L TVI++ G + L K+ R++ +RNL+QA+K I AM D + L
Sbjct: 92 PLLDGNQLDTVISRRDGGTGA---AKDLNKVHGRATAIKGERNLVQAYKEIGAMCDSISL 148
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A ++YK+VED+K LRG++ +AI+AAC++IACRQE RT +E C++ KK
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPKK 207
Query: 183 EIGR 186
EIGR
Sbjct: 208 EIGR 211
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 113/193 (58%), Gaps = 9/193 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D+ G +C CG V+ +DE+SEWR F+ +S+ DP R G NP
Sbjct: 35 CTDCGETQNIIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFS-DSNKADPCRTGSVSNP 93
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ + G++ S +L K+Q +++ P+R+L I+A +R +
Sbjct: 94 FLDTEQLDTMIS--SVPGTS---SYNLQKIQLKTAMRGPERSLKHGINLITAFCERANIT 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+ DRA I+K V+D+K L+G+N E +V AC+YIACR EN PRT KE S+ KKE
Sbjct: 149 KTVIDRACLIFKIVDDKKLLKGKNIEGVVGACIYIACRLENCPRTFKEV-SLITSVQKKE 207
Query: 184 IGRAKEFIVKHLE 196
IG++ + I H+E
Sbjct: 208 IGKSFKLISPHVE 220
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 113/194 (58%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D G+
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGWGIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ N PRT +E +V ++KEI
Sbjct: 143 NVADTAKYLFKTVDDAKAFKGKSQDVIIAGCIFIACRQRNVPRTFQEIFAVTK-VSRKEI 201
Query: 185 GRAKEFIVKHLEAE 198
GR + + K +A+
Sbjct: 202 GRIYKALEKFFQAQ 215
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 120/194 (61%), Gaps = 8/194 (4%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK +V + ++GD +C +CGLVL +D SEWR FAN+ D DP RVG N
Sbjct: 33 CPDCKITPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAAN 91
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGL 122
PLL G L TVI++ G + L K+ R++ +RNL+QA+K I AM D + L
Sbjct: 92 PLLDGNQLDTVISRRDGGTGA---AKDLNKVHGRATAVKGERNLVQAYKEIGAMCDSISL 148
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A ++YK+VED+K LRG++ +AI+AAC++IACRQE RT +E C++ KK
Sbjct: 149 SKIVSDTAKQLYKRVEDEKLLRGKSSDAIIAACIFIACRQEKVGRTFREICALTR-VPKK 207
Query: 183 EIGRAKEFIVKHLE 196
EIGR + + + L+
Sbjct: 208 EIGRCCKTLQQKLQ 221
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 5/208 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ +V + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 33 CPDCRDPNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 91
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PLL G L TVI+ GGS +++SS +RNL+ AF+ I D+ L
Sbjct: 92 PLLEGMEQLDTVISF-RDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLP 150
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ N +KK
Sbjct: 151 KTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTN-VSKKT 209
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHAS 211
+G+ + + + G +IH S
Sbjct: 210 LGQCYKALEQAFNLTPGSGSGGASIHPS 237
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 8/212 (3%)
Query: 6 CADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 20 CPDCREVPANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGDDPSRVGDAA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
NP L+G L T I+ T GG+ L + K S + L+ A+K I A D + +
Sbjct: 80 NPFLNGAQLETTISY-TPGGAGRELHRAQNKTAGDKST--KGLLAAYKEIGAFCDSINIQ 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ D A +++K V+D K +G+ QEAI+A C++IACRQ PRT +E ++ KKE
Sbjct: 137 KVVSDAAKQLFKIVDDHKAFKGKPQEAIIAGCIFIACRQCQVPRTFREIFALTK-VPKKE 195
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLV 215
IGR + + K A+ S +M I S +V
Sbjct: 196 IGRVFKALEKFFAAQ--DSKKMDEITKSGGIV 225
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 13/236 (5%)
Query: 9 CKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPLNPLL 67
C+ ++ DH++GD +C CGLVL+ S+D +SEWR F+N+ + DP RVG N LL
Sbjct: 37 CEDPPDLREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPNALL 96
Query: 68 SGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+G L+T IA G + L + K A +++L+QA+K I A+ D L +T+
Sbjct: 97 NGAQLNTNIAFGDGGMKAKDLHRAQNK--ANLDKGNKSLLQAYKQIGALCDGWQLPSTVS 154
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +YK E+ + +G+ Q+A++A C+++ACR+ PR+ +E + TKKEIG+
Sbjct: 155 DTAKHLYKDAEESRIFKGKGQDALIAGCVFLACRRNGVPRSFREVMDLTK-VTKKEIGKT 213
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLDFSS-CMIFCSL 242
+ + + Q T A D ++ N + D + C +CS+
Sbjct: 214 YKMLEDFIRQRDKQKSASKTAVAPD--------VYNNAYTTTTADPADLCQRYCSM 261
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 114/199 (57%), Gaps = 9/199 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK + +V + S+GD +C CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKDCKEVPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDGA 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
NPLL+G L+T I+ + L + Q +SS+ ++L+ A+K I A D +
Sbjct: 85 NPLLNGSQLTTSISFQDGNSRSR----DLMRTQNKSSNDKSTKSLLAAYKEIGAHCDAVN 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++ D A ++KKVED K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 141 LSKSVSDCAKLLFKKVEDAKAFKGKSQEAIIAGCIFIACRQCAVPRTFREIYALTK-VSK 199
Query: 182 KEIGRAKEFIVKHLEAEMG 200
K+IGR + + K G
Sbjct: 200 KDIGRTFKALEKFFAQNNG 218
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK + +V +S+GD +C CG+VL +D SEWR FANE D DP RVG +
Sbjct: 32 CPECKDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
PL+ G L TVI+ G G L + K QA + +++ FK IS D + L
Sbjct: 91 PLMDGMEQLDTVISFQDGGSGLARELQRASAKTQAFKDG--KTMMEGFKKISQFCDSISL 148
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
I D A ++YK+VE+ + L+G+ +AIVAAC++IACRQ + PRT +E C++ KK
Sbjct: 149 PKVISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQGHVPRTFREICNITK-VNKK 207
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
+G+ K +EA +V G +++ + I L
Sbjct: 208 ALGQC----YKAMEAYFRLNVSGGATSSTNRVDIHL 239
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 112/197 (56%), Gaps = 17/197 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C +CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEA 197
KKEIGR + K LE+
Sbjct: 197 KKEIGR----VFKQLES 209
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA---NGTTK 181
++D A ++ K L GR+ ++ AAC+Y+A N+ RT KE +VA +GT K
Sbjct: 259 VEDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIAAVAGVSDGTVK 317
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 13/216 (6%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ E+ DH++GD IC+ECGLVL+ +D +SEWR F+N+ + DP RVG
Sbjct: 33 CKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
N LL+G L+T IA + S L + Q +S+ ++ L+ A+K I A+ D
Sbjct: 93 NALLNGAQLNTSIAFGDG-----IRSKELHRAQNKSNLDKGNKTLLVAYKQIGALCDNWD 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + + D A +YK ++ + +G++QEA++A C+++ACR+ N PR+ +E + +K
Sbjct: 148 LPSMVSDTAKHLYKDADESRVFKGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VSK 206
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KEIGR + + L MG+ E + V+F
Sbjct: 207 KEIGRTFKMLETFL---MGKEKERQANGTNTGTVVF 239
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 9/198 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + S+GD +C+ CGLVL VD SEWR FAN+ + DP RVG
Sbjct: 25 CKDCKEYPPNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L T IA + L + GK S ++L+ A+K I A D + +
Sbjct: 85 NVLLNGSQLQTTIAYGDGNARSRDLLRAQGKTGNDKST--KSLLAAYKEIGAHCDAVNIP 142
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ D A ++K+V+D K +G++Q+AI+A C++IACRQ N PRT +E ++ +KK+
Sbjct: 143 KNVSDTAKYLFKQVDDGKAFKGKSQDAIIAGCIFIACRQCNVPRTFREIFALTK-VSKKD 201
Query: 184 IGRAKEFIVKHLEAEMGQ 201
IGR + K LEA G+
Sbjct: 202 IGR----VFKSLEAFFGK 215
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 6 CADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
PL+ G L T I+ G G L + + QA S +RNL+QAF+ I++ D+ L
Sbjct: 90 PLMEGMEQLDTTISFRDGGSGIARELQRAASRSQA--SRSERNLLQAFRDIASWCDQFSL 147
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 148 PKTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSKK 206
Query: 183 EIGR 186
+G+
Sbjct: 207 VLGQ 210
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 111/197 (56%), Gaps = 17/197 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEA 197
KKEIGR + K LE+
Sbjct: 197 KKEIGR----VFKQLES 209
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 111/197 (56%), Gaps = 17/197 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK +V + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 25 CPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
N L+ G L T IA G +L LQ + + D+N L+QA++ I ++D +
Sbjct: 85 NQLIDGDQLQTTIAFDGKNGK------NLSHLQNKITQ-DKNSKQLMQAYRDIQGLTDSI 137
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
T + + A IYK VED K L+G++QEAI A C++IACRQ PRT +E S+ +
Sbjct: 138 NAGTQVANAAKHIYKLVEDNKALKGKSQEAITAGCIFIACRQTGVPRTFREIYSLTK-VS 196
Query: 181 KKEIGRAKEFIVKHLEA 197
KKEIGR + K LE+
Sbjct: 197 KKEIGR----VFKQLES 209
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA---NGTTK 181
++D A ++ K L GR+ ++ AAC+Y+A N+ RT KE +VA +GT K
Sbjct: 259 VEDVARQLADKTSTISELAGRSPLSVAAACIYMASHIRNESRTSKEIATVAGVSDGTVK 317
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 14/196 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 28 CPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 88 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 182 KEIGRAKEFIVKHLEA 197
KEIGR + K LE+
Sbjct: 202 KEIGR----VFKQLES 213
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 14/196 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 232 CPDCKEYPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 291
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 292 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 346
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 347 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 405
Query: 182 KEIGRAKEFIVKHLEA 197
KEIGR + K LE+
Sbjct: 406 KEIGR----VFKQLES 417
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 110/196 (56%), Gaps = 14/196 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG +
Sbjct: 28 CPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAV 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T IA S +L +LQ +S + ++L+QA+K I A D +
Sbjct: 88 NPLLNGSQLETTIAFGDGRDSKQL-----ARLQNKSQNDKASKSLMQAYKEIGAFCDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A I+K D ++G+ QEA++A C++IACRQ RT +E V + +K
Sbjct: 143 LGKNVSDAAKHIFKLTYDHNFMKGKPQEAVIAGCIFIACRQTGVGRTFREIFQVTH-VSK 201
Query: 182 KEIGRAKEFIVKHLEA 197
KEIGR + K LE+
Sbjct: 202 KEIGR----VFKQLES 213
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 9/194 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLEA 197
IG+ + I K ++
Sbjct: 187 IGKCYKLISKEIDT 200
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 9/194 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLEA 197
IG+ + I K ++
Sbjct: 187 IGKCYKLISKEIDT 200
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 108/196 (55%), Gaps = 8/196 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C +CK L ++V + GD +C +CGLVL VD SEWR F+N+ DP RVG +
Sbjct: 13 CPECKILPPDIVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDAM 72
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T+I+ G S + L + Q+RS D L + IS + D +
Sbjct: 73 NPLLEGSQLNTIISFGAPGSS---VGRDLNRTQSRSLQDKKDAALSAVYAKISQICDGIS 129
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D K LRG+ +AI+A ++IACR N RT +E ++ N +K
Sbjct: 130 LPRVVSDAAKEVYKLVHDDKRLRGKTPDAIIATVIFIACRHANVQRTFQEIGALTN-VSK 188
Query: 182 KEIGRAKEFIVKHLEA 197
KEI R E + + LE
Sbjct: 189 KEIRRTLELMKRLLEG 204
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 9/191 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G +C+ECG + +DE SEWR F + + DP RVGGP NP
Sbjct: 11 CPNCGEDKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNP 70
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
L L T+I+ + T++ S G P+R LI F ++ DR G+
Sbjct: 71 FLETDVLDTIISGKDSLARTQMKSTMRG--------PERALINGFNLLTNYCDRNGIAMV 122
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I+DRA I K V ++K +G+N EA+ AACL++AC+ PRT KE S+ K E+G
Sbjct: 123 IQDRAKTILKTVIEKKLAKGKNAEAVAAACLHLACKHAKCPRTFKEI-SLMCQVPKDEVG 181
Query: 186 RAKEFIVKHLE 196
+ + I KH +
Sbjct: 182 KCYKLIEKHFD 192
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 13/215 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 22 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 82 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 138 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 196
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTIHASD 212
K+IGR ++F A+ + G + A D
Sbjct: 197 KDIGRTFKALEKFFASDSSAKKATADATGALAAPD 231
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 13/215 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 23 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 83 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ PRT +E ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCGVPRTFREIYALTK-VSK 197
Query: 182 KEIGRA----KEFIVKHLEAEMGQSVEMGTIHASD 212
K+IGR ++F A+ + G + A D
Sbjct: 198 KDIGRTFKALEKFFASDSSAKKATADATGALAAPD 232
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGVGGSRSRDLHRAQNKMS--SEKTNKTLLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 9/206 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +CK +V + +GD +C CGLVL +D SEWR FAN+ D DP RVG +
Sbjct: 30 CPECKDPNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDEGD-DPSRVGAASD 88
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
PLL G L TVI+ G ++ L + +RS + +RNL+ AF+ IS D+
Sbjct: 89 PLLEGIEQLDTVISFRDGGSG---IARELQRAASRSQNNRSERNLLTAFRDISNWCDQFS 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACR+ + PRT +E C++ +K
Sbjct: 146 LPKTISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVPRTFREICNLTR-VSK 204
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGT 207
K +G+ + + + L +S+ +
Sbjct: 205 KMLGQCYKALEQSLNLSGPESMPLAN 230
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 16/196 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA-NESSDHDPVRVGGPL 63
C DCK +V ++S+GD +C+ CGLVL+ +D SEWR F+ +++ + DP RVG
Sbjct: 30 CPDCKEEPPNLVEEYSSGDMVCASCGLVLDRI-IDTRSEWRTFSGDDNGNDDPSRVGDAP 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSDRLG 121
N ++ G L T IA G +L LQ + + + L+QA++ I A++D +
Sbjct: 89 NLMIDGDQLQTSIAFDGKGAK------NLAHLQNKVNQDKGTKALLQAYRDIQALTDSIN 142
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + A I+K V+D K L+G++QEAIVA C++IACRQ N PRT +E + +K
Sbjct: 143 AGAQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK-VSK 201
Query: 182 KEIGRAKEFIVKHLEA 197
KEIGR + K LEA
Sbjct: 202 KEIGR----VFKQLEA 213
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 106/193 (54%), Gaps = 9/193 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT KE SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFKEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHLE 196
IG+ + I K ++
Sbjct: 187 IGKCYKLISKEID 199
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK + +V + S+GD +C CG+V+ VD SEWR F+N+ + DP RVG
Sbjct: 23 CKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLG 121
NPLL+G LST IA G + + S L + Q + + + L+ A+K I A D +
Sbjct: 83 NPLLNGSQLSTTIA----FGDSSVRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAVN 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + D A ++K V+D K +G++QEAI+A C++IACRQ + PRT +E ++ +K
Sbjct: 139 IPKNVSDTAKHLFKLVDDAKAFKGKSQEAIIAGCIFIACRQCDVPRTFREIYALTK-VSK 197
Query: 182 KEIGR 186
K+IGR
Sbjct: 198 KDIGR 202
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 86
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G T L + K+ S +R L+ A+K I A+ D +
Sbjct: 87 PLLNGNQLETQISYGQGGAKTRELHRAQNKMS--SEKTNRALLAAYKEIGALCDGFNIQK 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E ++ +KKEI
Sbjct: 145 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKKEI 203
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 204 GRIYKTLEKFFTAQ 217
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 86
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G T L + K+ S +R L+ A+K I A+ D +
Sbjct: 87 PLLNGNQLETQISYGQGGAKTRELHRAQNKMS--SEKTNRALLAAYKEIGALCDGFNIQK 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E ++ +KKEI
Sbjct: 145 NVADTAKYLFKVVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFALTR-VSKKEI 203
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 204 GRIYKALEKFFTAQ 217
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMS--SEKTNKALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMS--SEKTNKALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMS--SEKTNKALLAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK ++ + S+GD +C CGLV+ +D SEWR F+N+ + DP RVG
Sbjct: 29 CKDCKEFPPNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDAP 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N ++ G L T IA G + LS K+ + L+QA++ I +++D +
Sbjct: 89 NLMIDGDQLQTTIAY-GEGKNARNLSHLQNKVN--QDKASKALLQAYRDIQSLTDSINTG 145
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + + A IYK VED K L+G++QEAI+A C++IACRQ PRT +E + +KKE
Sbjct: 146 SQVANAAKHIYKLVEDNKALKGKSQEAIIAGCIFIACRQMGVPRTFREIYGLTK-VSKKE 204
Query: 184 IGRAKEFIVKHLEA---EMG--QSVEMGTIHASDY 213
IGR + K LEA +MG + V +I + Y
Sbjct: 205 IGR----VFKQLEAFLQKMGGEEQVAQTSIFTAQY 235
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 9/192 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D+A I+K VE +K L+G+N E + AC+YIAC+ E PRT +E SV K+E
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGKNLEGCIGACIYIACKTEGCPRTFQEI-SVITVVPKRE 186
Query: 184 IGRAKEFIVKHL 195
IG+ + I K +
Sbjct: 187 IGKCYKLISKEM 198
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 10/195 (5%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ E+ DH++GD +C+ CGLVL ++D SEWR F+N+ + DP RVG
Sbjct: 33 CKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDPSRVGEGP 92
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L T IA S EL + ++ ++ L+QA+K I A+ D L
Sbjct: 93 NTLLNGAQLETGIAFGDGIRSREL---HRAQNKSNMDKTNKGLLQAYKQIGALCDGWQLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ D A +YK ++ + RG++QEA++A C+++ACR+ N PR+ +E + +KKE
Sbjct: 150 SSVSDTAKHLYKDADESRLFRGKSQEALIAGCVFLACRRNNVPRSFREVMELTK-VSKKE 208
Query: 184 IGRA----KEFIVKH 194
IGR ++F +K+
Sbjct: 209 IGRTFKLLEQFYMKN 223
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 115/199 (57%), Gaps = 22/199 (11%)
Query: 6 CADCK----RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA-NESSDHDPVRVG 60
C +CK RL E ++S+GD +C CGLVL+ +D SEWR F+ +++ + DP RVG
Sbjct: 27 CPECKEDPPRLVE---EYSSGDMVCETCGLVLDRI-IDTRSEWRTFSGDDNGNDDPSRVG 82
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD--RNLIQAFKSISAMSD 118
N ++ G L T IA G +L LQ + + + L+QA++ I A++D
Sbjct: 83 DAPNLMIDGDQLQTAIAFDGKGAK------NLAHLQNKINQDKGTKVLLQAYRDIQALTD 136
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ T + + A I+K V+D K L+G++QEAIVA C++IACRQ N PRT +E +
Sbjct: 137 SINAGTQVANTAKHIFKMVDDNKALKGKSQEAIVAGCIFIACRQTNVPRTFREVYGLTK- 195
Query: 179 TTKKEIGRAKEFIVKHLEA 197
+KKEIGR + K LE+
Sbjct: 196 VSKKEIGR----VFKQLES 210
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 4/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + +TIC CGLVL +D+ SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAAN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ G + L + K+ S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGNQLETQISYGAGGSRSRELHRAQNKMS--SEKTNKVLMAAYKEIGALCDGFNIPK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V TKKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VTKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 118/211 (55%), Gaps = 13/211 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPECRDPNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
PL+ G L TVI+ G ++ L + +RS S +RN++ AF+ I + D+
Sbjct: 91 PLMEGMEQLDTVISFRDGGSG---IARELQRAASRSQNSRSERNIMTAFRDIGSWCDQFS 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C + + +K
Sbjct: 148 LPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICDLTH-VSK 206
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASD 212
K +G+ K LE + HAS+
Sbjct: 207 KILGQC----YKALEQAFNLTPGASAAHASN 233
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L T I+ GGS ++ +S +RNL+QAF+ IS D+ L
Sbjct: 90 PLMDGMEQLDTTISF-RDGGSGLARELQRAASRSSASRSERNLLQAFRDISNWCDQFSLP 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 149 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICNLTH-VSKKV 207
Query: 184 IGRAKEFIVKHLEAEMGQSVEM------GTIHASDYLVIF 217
+G+ + + + G S + GT D L+ +
Sbjct: 208 LGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRY 247
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 5/183 (2%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DC+ ++ DH++GD IC CGLVL+ S+D +SEWR F+N+ + DP RVG
Sbjct: 32 CRDCREDPPDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGP 91
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
N LL+G L+T IA G ++ L + K A ++ L+QA+K I A+ D L
Sbjct: 92 NALLNGAQLNTSIAFGDGGIRSKELHRAQNK--ANLDKGNKTLLQAYKQIGALCDGWQLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++ D A I+K ++ + +G++QEA++A C+++ACR+ N R+ +E + +KKE
Sbjct: 150 NSVSDTAKHIFKDADESRLFKGKSQEALIAGCVFLACRRNNVARSFREVMELTK-VSKKE 208
Query: 184 IGR 186
IGR
Sbjct: 209 IGR 211
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 201
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 202 GRIYKALEKFFTAQ 215
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG +N
Sbjct: 26 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAMN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S ++ L+ A+K I A+ D +
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKALLAAYKEIGALCDGFNIQK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 201
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 202 GRIYKALEKFFTAQ 215
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 97 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 156
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + EL + + S ++ L+ A+K I A+ D +
Sbjct: 157 PLLNGDQLETQIASGGSGRARELYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 213
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+KEI
Sbjct: 214 NVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 272
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 273 GRIYKALEKFFTAQ 286
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 8/195 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E+V HS GD +C+ CGLVL + +D SEWR FAN+ + DP RVG
Sbjct: 19 CPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGDDPSRVGEAT 78
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
N L LSTVI +AG + L ++Q RS D L A+ IS + D
Sbjct: 79 NGALDSDQLSTVI---SAGVDGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQLCDGYQ 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D K LRG++QEAI+AA ++ CR+ + PRT E ++ N K
Sbjct: 136 LPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVPRTYNEIWALTN-VPK 194
Query: 182 KEIGRAKEFIVKHLE 196
K+IG+ + I + ++
Sbjct: 195 KDIGKVFKIIKQIIQ 209
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + EL + + S ++ L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIASGGSGRARELYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 200
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 201 GRIYKALEKFFTAQ 214
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 21/225 (9%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + S+GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR-----NLIQAFKSISAMSD 118
PL+ G L T I+ G SG +LQ +S NL+QAF+ I+ D
Sbjct: 90 PLMEGMEQLDTTISFRDGG------SGIARELQRAASRSAASRSERNLLQAFRDIAGWCD 143
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ +
Sbjct: 144 QFSLPKTISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH- 202
Query: 179 TTKKEIGRAKEFIVKHLEAEMGQSVEM------GTIHASDYLVIF 217
+KK +G+ + + + G S + GT A D LV +
Sbjct: 203 VSKKVLGQCYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRY 247
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL+G L T IA +G + +L + Q + S N L+ A+K I A+ D +
Sbjct: 85 PLLNGAQLETSIASGGSGRARDLY-----RAQNKQSGEKANKALLAAYKEIGALCDGFNI 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
T+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+K
Sbjct: 140 QKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 183 EIGR-----AKEFIVKHLEAEMGQSVEMGTIH--ASDY 213
EIGR K F +++E ++E G H A DY
Sbjct: 199 EIGRIYKALEKFFTTQNVE-RHNAALENGETHDFAGDY 235
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL+G L T IA +G + +L + Q + S N L+ A+K I A+ D +
Sbjct: 85 PLLNGAQLETSIASGGSGRARDLY-----RAQNKQSGEKANKALLAAYKEIGALCDGFNI 139
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
T+ D A ++K V+D K +G++QE I+A C++IACRQ PRT E +V T+K
Sbjct: 140 QKTVADTAKYLFKMVDDAKAFKGKSQEVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRK 198
Query: 183 EIGR-----AKEFIVKHLEAEMGQSVEMGTIH--ASDY 213
EIGR K F +++E ++E G H A DY
Sbjct: 199 EIGRIYKALEKFFTTQNVE-RHNAALENGETHDFAGDY 235
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 15/195 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
CA+CK ++ + S+GD +C CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 26 CAECKEFPPNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDGP 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHP--DRNLIQAFKSISAMSDRLG 121
N ++ G L T IA G +L LQ + ++ + L+ A++ I + +D +
Sbjct: 86 NLMIDGDQLQTTIAFDGKGAK------NLSHLQNKMTNDKGSKQLLNAYRDIQSFTDSIN 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
T + + A IYK V+D K L+G++QEAI+A C++IACRQ N RT +E + +K
Sbjct: 140 TGTQVANAAKHIYKLVDDAKALKGKSQEAIIAGCIFIACRQANADRTFREIYRLTK-VSK 198
Query: 182 KEIGRAKEFIVKHLE 196
KEIGR + K LE
Sbjct: 199 KEIGR----VFKQLE 209
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C DCK + +V + S+GD +C CG+V+ +D SEWR FAN+ DH DP RVGG
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFAND--DHGGDDPSRVGG 80
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P + + G L+T +A + L S + A + L+QA+K I ++ + +
Sbjct: 81 PQDEFVEGEQLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVSLCEAIN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +K
Sbjct: 138 MGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 196
Query: 182 KEIGRAKEFIVKHLE 196
KE+GR + + K L+
Sbjct: 197 KEVGRVFKQLQKFLQ 211
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT---VKEFCSVANGTTK---KE 183
+ ++ +K D L GR+ ++ AAC+Y+AC +PR+ + + V++GT K K
Sbjct: 260 SRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKTAYKH 319
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
+ A+E ++K E G S++
Sbjct: 320 LFAAREQLIKKEWLEDGGSMD 340
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 5/183 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ ++ + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 32 CPDCRDPNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAASD 90
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
PL+ G L TVI+ GGS +++SS +RN++ AF+ IS+ D+ L
Sbjct: 91 PLMEGIEQLDTVISF-RDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLP 149
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI D A ++YK+ +++K LRG+ +A++AAC++IACRQ + PRT +E C++ + +KK
Sbjct: 150 KTISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVPRTFREICTLTH-VSKKV 208
Query: 184 IGR 186
+G+
Sbjct: 209 LGQ 211
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C DCK + +V + S+GD +C CG+V+ +D SEWR FAN+ DH DP RVGG
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFAND--DHGGDDPSRVGG 80
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
P + + G L+T +A + L S + A + L+QA+K I ++ + +
Sbjct: 81 PQDEFVEGEQLATTVAFSESKAHKAL---SRTQNNASQDKAQKGLMQAYKEIVSLCEAIN 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +K
Sbjct: 138 MGQNVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSK 196
Query: 182 KEIGRAKEFIVKHLE 196
KE+GR + + K L+
Sbjct: 197 KEVGRVFKQLQKFLQ 211
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT---VKEFCSVANGTTK---KE 183
+ ++ +K D L GR+ ++ AAC+Y+AC +PR+ + + V++GT K K
Sbjct: 260 SRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSSLPIAKQAGVSDGTVKTAYKH 319
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
+ A+E ++K E G S++
Sbjct: 320 LFAAREQLIKKEWLEDGGSMD 340
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 9/192 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 26 CPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S +++L+ A+K I A+ D G+
Sbjct: 86 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFGIPK 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACR+ PRT E +V ++KEI
Sbjct: 143 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRKCKVPRTFTEIFAVTK-VSRKEI 201
Query: 185 GRAKEFIVKHLE 196
GR I K LE
Sbjct: 202 GR----IYKALE 209
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DC+ + ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 24 CPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + + L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATTVAFSESKAHKAL---SRTQNNTNQDKAQKGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHA 210
+GR + + L+ GQ E ++A
Sbjct: 200 VGRVFKQLQSFLQKLQGQDGEATGLNA 226
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 105/183 (57%), Gaps = 6/183 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 32 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 91
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + + L+QA+K I A+ + + +
Sbjct: 92 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANADKAQKGLMQAYKEIVALCETINMG 148
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 149 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 207
Query: 184 IGR 186
+GR
Sbjct: 208 VGR 210
>gi|255540857|ref|XP_002511493.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550608|gb|EEF52095.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 89
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 137 VEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+EDQK PL GRNQ+AI AACLYIACRQENKPRT KE CSV NG TKKEIGRA+ FI+KHL
Sbjct: 1 MEDQKKPLEGRNQDAITAACLYIACRQENKPRTPKEICSVVNGATKKEIGRAEVFILKHL 60
Query: 196 EAEMGQSVEMGTIHASDYL 214
E EMG VE GTIHA+DYL
Sbjct: 61 EVEMGH-VEAGTIHAADYL 78
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +GGS + + + S +++L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIA---SGGSGRVRDLYRAQNKQSSEKANKSLLAAYKEIGALCDGFSIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V ++KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VSRKEI 200
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 201 GRIYKALEKFFTAQ 214
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 106/183 (57%), Gaps = 6/183 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +++ + S+GD +C+ CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 38 CPDCKEYPPDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + L+QA+K I A+ + + +
Sbjct: 98 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVALCETIHMG 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 155 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 213
Query: 184 IGR 186
+GR
Sbjct: 214 VGR 216
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC R T + + S+GD +CSECGLV+ VD SEWR FAN+ DP RVG +P
Sbjct: 23 CKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSRVGDAGDP 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---NLIQAFKSISAMSDRLGL 122
+ + G L T I ++ + G L ++ + DR L +F IS D+L
Sbjct: 83 IWNDGSLETKIDTSRGQNASGRIIGRLNNANKKTQN-DRGQAGLQASFAKISEHVDKLQG 141
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ D A ++K V+D K L+G++ EA++A C++IACR N RT +E ++ + +KK
Sbjct: 142 GKPVLDYARHLFKMVDDAKFLKGKSPEAVIAGCIFIACRANNVGRTFREIHALTS-VSKK 200
Query: 183 EIGRA----KEFIVKHLEA 197
EIGR ++F+ ++ EA
Sbjct: 201 EIGRVYKSLEDFVKRNPEA 219
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 118/209 (56%), Gaps = 11/209 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC+ + +V + S+GD +C CG+V+ +D SEWR FAN+ + DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + LL Q + R L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATSVAFSESRQHKNLLRVQNNTNQDKQQ---RGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI 208
+GR + F+ K + E G++ + T+
Sbjct: 200 VGRVFKQLQNFLQKLQDTE-GEATGLNTV 227
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 16/197 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
NPLL G L T IA S +L ++Q +S D+N + AF+ ISA +D +
Sbjct: 90 NPLLDGAQLETSIAF-----SEGRDHKNLARIQNKS-QTDKNTKAIGSAFREISAFTDSI 143
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + D A IYK D ++G+ QEA+VA C++IACRQ RT +E V N +
Sbjct: 144 NLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VS 202
Query: 181 KKEIGRAKEFIVKHLEA 197
KKEIGR + K LE+
Sbjct: 203 KKEIGR----VFKALES 215
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 109/197 (55%), Gaps = 16/197 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ + +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN---LIQAFKSISAMSDRL 120
NPLL G L T IA S +L ++Q +S D+N + AF+ ISA +D +
Sbjct: 90 NPLLDGAQLETSIAF-----SEGRDHKNLARIQNKS-QTDKNTKAIGSAFREISAFTDSI 143
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + D A IYK D ++G+ QEA+VA C++IACRQ RT +E V N +
Sbjct: 144 NLGKNVADGAKHIYKLCHDHSFMKGKPQEALVAGCIFIACRQAGVGRTFREIYQVTN-VS 202
Query: 181 KKEIGRAKEFIVKHLEA 197
KKEIGR + K LE+
Sbjct: 203 KKEIGR----VFKALES 215
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELNRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGR 186
KEIG+
Sbjct: 199 KEIGK 203
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ + + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 25 CPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T IA +G + +L + + S ++ L+ A+K I A+ D +
Sbjct: 85 PLLNGDQLETQIASGGSGRARDLYRA---QNKQSSEKANKALLAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V T+KEI
Sbjct: 142 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTK-VTRKEI 200
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 201 GRIYKALEKFFTAQ 214
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 15/208 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ GD ICS+CGL++ +D +SEWR F+++ S DP RVG +P+L LST
Sbjct: 26 LVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS-TDPVLQN--LST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
I +P+A G S K+ + R L+ F I+ M++R+ +I A I+
Sbjct: 83 FI-QPSANGFEPPNHFSFLKMDTTT----RKLMFGFAMIATMAERINAPASIVSHAKTIF 137
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+ + L R+ EA+ ACLYIACRQE PRT KE C+V + +KKEIGR + I K
Sbjct: 138 KQALEPAALTHRSLEAVSVACLYIACRQEGVPRTFKEMCAVCSA-SKKEIGRCFKLITKV 196
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNIF 222
L + I + D++ F +F
Sbjct: 197 LATSLDH------ITSEDFMQRFCSKLF 218
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 118/209 (56%), Gaps = 11/209 (5%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C +C +V + S+GDT+C +CG+V+ + +D SEWR FAN+ DP RVGGP
Sbjct: 21 CPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q +S + L+QA+K I + + + +
Sbjct: 81 DEFVEGQQLATTVAFSETKAHKALSRTQNNTNQDKS---QKGLMQAYKEIVSYCEAINMG 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T + + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 138 TNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 196
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI 208
+GR + F+ K L+ + G++ + T+
Sbjct: 197 VGRVFKQLQSFLQK-LQDQDGEATGLNTV 224
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGR 186
KEIG+
Sbjct: 199 KEIGK 203
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 6/183 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK ++ + S+GD +C CG+V+ +D SEWR FAN+ DP RVGGP
Sbjct: 24 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + L S + A + L+QA+K I A+ + + +
Sbjct: 84 DEFVEGQHLATTVAFSESKAHKAL---SRTQNNANQDKAQKGLMQAYKEIVALCETIHMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 ANVSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGR 186
+GR
Sbjct: 200 VGR 202
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ A ST+ L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMIS--YAPDSTKA-GRELSRAQSKSLVDKKDNALAAAYIKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGR 186
KEIG+
Sbjct: 199 KEIGK 203
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ +++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTENTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPDCKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + + L + Q++S D L AF IS M D
Sbjct: 84 NPLLDHENLSTMISH---SPDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQMCDGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ PRT KE ++ N +
Sbjct: 141 LPKIVQDAAKEVYKLVYEERPLRGKSQESIMAASIFIGCRKAKVPRTFKEIWALTN-VPR 199
Query: 182 KEIGR 186
EIG+
Sbjct: 200 TEIGK 204
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 13 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 71
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 72 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 129
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 130 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 188
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 189 GRIYKALEKFFTAQ 202
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ + L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQNKMSTEKTN--KALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + S +TIC CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 27 CPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDASN 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
PLL+G L T I+ T G + L + K+ ++ ++ L+ A+K I ++ D +
Sbjct: 86 PLLNGNQLETQISFGTGGARSRELHRAQSKMSTENT--NKALLAAYKEIGSLCDGFNIQK 143
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V +KKEI
Sbjct: 144 NVADTAKYLFKIVDDAKAFKGKSQDVIIAGCIFIACRQCKVPRTFTEIFAVTR-VSKKEI 202
Query: 185 GRAKEFIVKHLEAE 198
GR + + K A+
Sbjct: 203 GRIYKALEKFFTAQ 216
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 112/202 (55%), Gaps = 11/202 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E++ HS GD +C+ CGLVL + +D SEWR F N+ + DP RVG
Sbjct: 30 CPECKVYPPELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGDDPSRVGEAS 89
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
+L LSTVI+ GG ++ L + Q +S D L A+ IS M D
Sbjct: 90 ASVLDSDQLSTVISNSQEGGR---VARELNRTQGKSVADKKDHALQTAYAKISQMCDGYQ 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D K LRG++QE+I+AA +++ CR+ + PR+ KE ++ N +
Sbjct: 147 LPKVVQDGAKEVYKLVYDDKMLRGKSQESIMAAAIFLGCRKASVPRSFKEIWALTN-VPR 205
Query: 182 KEIGRAKEF---IVKHLEAEMG 200
KEIG+ + I++ AE G
Sbjct: 206 KEIGKTFKVINQIIRKKNAEHG 227
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 15/195 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C+ CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 27 CPDCKESPPNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDPSRVGEGP 86
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHP--DRNLIQAFKSISAMSDRLG 121
N ++ G L T IA +L LQ + + + L+ A++ I +++D +
Sbjct: 87 NLMIDGDQLQTAIAYDGKNAK------NLAHLQNKINQDKGSKALMAAYRDIQSLTDSIN 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + A I+K VED K L+G++QEAI+A C++IACRQ PRT +E + +K
Sbjct: 141 AGAQVANAAKHIFKMVEDNKALKGKSQEAIIAGCIFIACRQTGVPRTFREIYGLTK-VSK 199
Query: 182 KEIGRAKEFIVKHLE 196
KEIGR + K LE
Sbjct: 200 KEIGR----VFKQLE 210
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ IS M D
Sbjct: 83 NPLLDTEDLSTMISYVP---DNTKVGRELNRAQSKSLVDKKDNALAAAYVKISQMCDGYQ 139
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A E+YK V D+KPLRG++QE+I+AA ++I CR+ N R+ KE ++ N +
Sbjct: 140 LPKIVSDGAKEVYKMVYDEKPLRGKSQESIMAASIFIGCRKANVARSFKEIWALTN-VPR 198
Query: 182 KEIGR 186
KEIG+
Sbjct: 199 KEIGK 203
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 116/209 (55%), Gaps = 10/209 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC+ + +V + S+GD +C CG+V+ +D SEWR FAN+ + DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGDDPSRVGGPQ 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A + LL Q + + L+QA+K I ++ + + +
Sbjct: 84 DEFVEGQQLATSVAFSESRQHKNLLRVQNNTNQDKQQ---KGLMQAYKEIVSLCEAINMG 140
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K ++G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 141 QNVSNAAKHIFKLVDKYKFMKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 199
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI 208
+GR + F+ K + E + + T+
Sbjct: 200 VGRVFKQLQNFLQKLQDTEGEGATGLNTV 228
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 13/221 (5%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE-SSDHDPVRVGGPL 63
C DCK +V + SAGDTIC CG VL +D SEWR F+N+ + DP R+G
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDAA 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL G L T I G LS + +S+H N L A+ I+A+ D
Sbjct: 98 NPLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQITALCDSQN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ + A +YK +D K +G++Q+AI+A C++IACR+ ++ R+ +E + N +K
Sbjct: 154 ISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VSK 212
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
KE+GR K LEA + +S G A + VI +N+
Sbjct: 213 KEVGR----TFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLL 249
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 109/186 (58%), Gaps = 10/186 (5%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + ++V + +GD +C+ CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 30 CPDCRDPVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAQD 88
Query: 65 PLLS-GGGLSTVIA--KPTAGGSTELL-SGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
PLL L+T I G + EL + S G ARS +R++ AF+ IS M D
Sbjct: 89 PLLDEQDQLATAIGFRDGNTGVARELQRAASRGMNGARS---ERSIQTAFREISNMCDSF 145
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +I D A ++YK+ +++K LR ++ +A++AAC++IACRQ PRT +E C +
Sbjct: 146 SLPKSISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQAQVPRTFREICELTR-VP 204
Query: 181 KKEIGR 186
KK IG+
Sbjct: 205 KKIIGQ 210
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 11/209 (5%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C +V + S+GDT+CS+CGLV+ + +D SEWR FAN+ DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q ++ + L+ A+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALSRTQNNTTQDKAQ---KGLMLAYKEIVSLCEAINMG 138
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 139 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 197
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI 208
+GR + F+ K E E G + + T+
Sbjct: 198 VGRVFKQLQSFLQKLQETE-GDATGLNTV 225
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 11/209 (5%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C +V + S+GDT+CS+CGLV+ + +D SEWR FAN+ DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
+ + G L+T +A L Q ++ + L+ A+K I ++ + + +
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALSRTQNNTTQDKAQ---KGLMLAYKEIVSLCEAINMG 138
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ + A I+K V+ K L+G+ QEA++A C++IACRQ N PRT +E ++ + +KKE
Sbjct: 139 QNVSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQNNVPRTFREIFNLTS-VSKKE 197
Query: 184 IGRA----KEFIVKHLEAEMGQSVEMGTI 208
+GR + F+ K E E G + + T+
Sbjct: 198 VGRVFKQLQSFLQKLQETE-GDATGLNTV 225
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDTEDLSTMISYVP---ENTRVGRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQ 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D++PLRG++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 146 LPKIVQDGAKEVYKLVYDERPLRGKSQESIMAAAIFIGCRKAKVARSFKEIWALTN-VPR 204
Query: 182 KEIGRAKEFIVKHLE 196
KEIG+ + I K ++
Sbjct: 205 KEIGKVFKIIDKVIQ 219
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 103/195 (52%), Gaps = 8/195 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK E+ + GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 19 CPECKVFPPELAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGDDPSRVGEAG 78
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST+I G L K Q++S D L A+ IS M D
Sbjct: 79 NPLLDGNQLSTMIG---YGQGDSRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMCDAAQ 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A + YK D+K L+G++QE+I+AA + + CR+ RT KE C++ K
Sbjct: 136 LPRIVQDGAKQAYKLSHDEKALKGKSQESIMAAVIVVGCRKAQVDRTFKEICTLTR-VPK 194
Query: 182 KEIGRAKEFIVKHLE 196
KEIGR I K LE
Sbjct: 195 KEIGRVFVIIKKILE 209
>gi|324528353|gb|ADY48903.1| Transcription initiation factor IIB, partial [Ascaris suum]
Length = 181
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 44 WRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHP 102
WR F+ E S DP RVG P NPLL LST IA GS+E SL Q R+ +
Sbjct: 1 WRSFSGEKSGIDPSRVGAPENPLLGSSDLSTSIA--VYYGSSEC-DQSLASAQRRTLNGV 57
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR + +A I MS R+ L +I+D A ++++ V D + L G+N EA AACLYIACR+
Sbjct: 58 DRQMTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRK 117
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDY 213
E PRT KE C+V+ +KKEIGR + ++ LE + Q + S++
Sbjct: 118 EGVPRTFKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQITSADFMEESNF 167
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 6/194 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
NPLL LST+I+ P G + LS + +L++ D +L+ A+ IS M + L
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLSRA--QLKSAIDRKDSSLVAAYSKISHMCEGYQL 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D + EIYK V D+K LRG++QE+I+AA + + CR+ N R+ E ++ N KK
Sbjct: 143 PRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VPKK 201
Query: 183 EIGRAKEFIVKHLE 196
E+GR + +++ L+
Sbjct: 202 ELGRVFKTMIQLLQ 215
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 3/181 (1%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC R ++V + S+GD +C CGLV+ VD SEWR FA + D DP RVGGP NP
Sbjct: 29 CPDC-RTYKLVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LL+G I G + + +A + ++++ AF SI M D + L T
Sbjct: 87 LLNGVETFETIISFKDGNTGVARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISLPRT 146
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+ D A +++++ +++K LRG+ +A++AAC++IACRQ R+ KE ++ KK+IG
Sbjct: 147 VTDIAKQLFRRADEEKLLRGKQIDAVIAACIFIACRQSKVGRSFKEVVALTR-VPKKQIG 205
Query: 186 R 186
+
Sbjct: 206 Q 206
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 8/208 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++D P RVG N
Sbjct: 23 CPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSN 82
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
LL+G L T IA G + +L KL S ++ L+ A+K I A+ D +
Sbjct: 83 ILLNGNQLETSIAGGATGAARQLYRAQ-NKLS--SEKNNKALMAAYKEIGALCDGFNIQK 139
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+ I+A C++IACRQ PRT E +V ++KEI
Sbjct: 140 IVADTAKYLFKIVDDHKAFKGKSQDVIIAGCIFIACRQCQAPRTFSEIFAVTK-VSRKEI 198
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASD 212
GR + + K A Q++E + +D
Sbjct: 199 GRIYKSLEKFFTA---QNIERTAVVGAD 223
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 125/243 (51%), Gaps = 20/243 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWR---IFANESSDHDPVRVGG 61
C +CK + ++V + +GD +C +CGLVL VD SE FAN+ D DP RVG
Sbjct: 31 CPECKDMNPKIVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDEGD-DPSRVGA 89
Query: 62 PLNPLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSD 118
NPLL G L TVI+ G ++ L + AR S +RN++ AF+ ISAM +
Sbjct: 90 ATNPLLEGIEQLDTVISFKDGGSG---MARELQRAAARGSVGKNERNMMTAFRDISAMCE 146
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+ L + D A ++YK+ E++K +RG++ +A+VA C+ IACRQ N PRT KE +
Sbjct: 147 SISLPKNVSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQANVPRTFKEIHQLTR- 205
Query: 179 TTKKEIGRA-----KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLDF 233
KK +G+ + F + GQ G AS LLN + N L
Sbjct: 206 VPKKTLGQCFKAFEQAFDLSRPAPADGQD---GAGPASGTSAENLLNRYCNQLHLHASVV 262
Query: 234 SSC 236
++C
Sbjct: 263 TAC 265
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
NPLL LST+I+ P G + LS + Q++S+ D +L+ A+ IS M +
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLS----RAQSKSAIDRKDSSLVAAYSKISHMCEGY 140
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L ++D + EIYK V D+K LRG++QE+I+AA + + CR+ N R+ E ++ N
Sbjct: 141 QLPRVVQDASKEIYKLVHDEKRLRGKSQESIMAASICLGCRKANVGRSFLEIAALTN-VP 199
Query: 181 KKEIGRAKEFIVKHLE 196
KKE+GR + +++ L+
Sbjct: 200 KKELGRVFKTMIQLLQ 215
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK E++ S GD IC CGLVL + VD SEWR F N+ + DP RVG
Sbjct: 21 CRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGDDPSRVGEAQ 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST+IA T + L + Q + D L AF IS + +
Sbjct: 81 NPLLDGDQLSTIIAYNT---DNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLCEGFQ 137
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A E+YK V +++ L+G++QE+I+AA + +ACR+ N PR+ KE ++ + K
Sbjct: 138 LPNIVQNGAKEVYKLVYNERSLKGKSQESIMAAAIGLACRKANVPRSFKELWALTD-VPK 196
Query: 182 KEIGRAKEFIVKHLE 196
EIG+ + I K ++
Sbjct: 197 NEIGKVFKIIHKLIQ 211
>gi|356513820|ref|XP_003525607.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-2-like [Glycine max]
Length = 347
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 32/226 (14%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSV-DETSEWRIF-------------- 47
+ YC+DCK T +V+DH+AGDTICSECGLVLE+ S+ +E + R++
Sbjct: 5 EEYCSDCKSYTPLVYDHNAGDTICSECGLVLESRSIEEEIPKLRLYGDKHEDDDDGGGDH 64
Query: 48 -ANESSDHDPVRVGGPLNPLL--SGGGLSTVIAKPTA--GGSTELLSGSLGKLQARSSHP 102
+ V P N LL SG GLST++ P+ +++++ + ++S+
Sbjct: 65 EDEDEHQEQGFSVSDPFNTLLLTSGAGLSTLVTHPSLYDNNNSDMVKTRKNQRGIKNSNR 124
Query: 103 DR--------NLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVED--QKPLRGRNQEAIV 152
D +L+ A ++ M++ LGL +IK+ A E+YKK ED R R+ A +
Sbjct: 125 DAKRKLKTDCDLVAALLTMEQMANNLGLAWSIKNHAKELYKKAEDRRVFRGRRRHSRASM 184
Query: 153 AACLYIACRQENKPRTVKEFCSVANGTTK--KEIGRAKEFIVKHLE 196
ACLY+AC++E PRTVKE SV+ G + K I +A KH +
Sbjct: 185 VACLYLACQEEGFPRTVKEIQSVSGGAKEKNKHIYKAIGVFKKHFQ 230
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ L + Q++S D L A+ IS M D
Sbjct: 91 NPLLDTEDLSTMISYVPDNSKA---GRELNRAQSKSLVDKKDNALAAAYAKISQMCDGYQ 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D+K LRG++QE+I+AA ++I CR+ RT KE ++ N K
Sbjct: 148 LPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN-VPK 206
Query: 182 KEIGR 186
KEIG+
Sbjct: 207 KEIGK 211
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 107/192 (55%), Gaps = 8/192 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDSEDLSTMISYVP---DNTKVGRELNRAQSKSLVDKKDNALAAAYSKISQMCDGYQ 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 146 LPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN-VPR 204
Query: 182 KEIGRAKEFIVK 193
KEIG+ + +++
Sbjct: 205 KEIGKVFKIMIR 216
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 108/195 (55%), Gaps = 14/195 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL LST+I+ T G L + Q++S D L A+ IS M D
Sbjct: 89 NPLLDSEDLSTMISYVPDNTKAGR------ELNRAQSKSLVDKKDNALAAAYAKISQMCD 142
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++D A E+YK V +++PLRG++QE+I+AA ++I CR+ R+ KE ++ N
Sbjct: 143 GYQLPRIVQDSAKEVYKLVYEERPLRGKSQESIMAAAIFIGCRKAGVARSFKEIWALTN- 201
Query: 179 TTKKEIGRAKEFIVK 193
+KEIG+ + +++
Sbjct: 202 VPRKEIGKVFKIMIR 216
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 11/221 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DC+ +V + SAGDTIC CG VL +D SEWR F+N+ + DP R+G
Sbjct: 38 CPDCQESPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDAA 97
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL G L+T I G L L + +S+H N L A+ IS + D
Sbjct: 98 NPLLHGSQLATEIGFGDGG----LRVRELSRAHNKSNHDKANKALQAAYGQISTLCDSQN 153
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ T + A ++K +D K +G++Q+AI+A C++IACRQ + R+ +E + N +K
Sbjct: 154 INKTTAETAKYLFKMTDDVKLFKGKSQDAIIAGCIFIACRQHRQQRSFREIFKMTN-VSK 212
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
KE+GR + + +L+ Q + G A + V+ N+
Sbjct: 213 KEVGRTFKALEAYLQKT--QKEKTGPTVAGNGAVMDTTNLL 251
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 116/230 (50%), Gaps = 22/230 (9%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE----------SSDH 54
C DCK +V + SAGDTIC CG VL +D SEWR F+N+ +
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLTCTNQGND 97
Query: 55 DPVRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKS 112
DP R+G NPLL G L T I G LS + +S+H N L A+
Sbjct: 98 DPSRIGDAANPLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQ 153
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I+A+ D + + A +YK +D K +G++Q+AI+A C++IACR+ ++ R+ +E
Sbjct: 154 ITALCDSQNISRPTAETAKMLYKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREI 213
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIF 222
+ N +KKE+GR K LEA + +S G A + VI +N+
Sbjct: 214 FKMTN-VSKKEVGR----TFKVLEAFIQKSQNSGPSVAGNGAVIDTVNLL 258
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC + + D + G+ +C +CGLVLE +D+ +EWR+F+ E D R G P+
Sbjct: 12 CGDCGSRS-LTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQGDQ-RARTGAPMTV 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISA 115
+L GLST I S + ++ + K Q RS + +RNL A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ RL L ++++ A YKK D++ +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 130 MASRLELPKSVREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQ- 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
A+ T +KEIGR F+V+ L+ ++
Sbjct: 189 ASRTGRKEIGRTYRFMVRELKMKI 212
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 103/186 (55%), Gaps = 10/186 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSG-SLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL LST+I+ +G L + Q++S D L A+ IS M D
Sbjct: 91 NPLLDTEDLSTMISYV----PDNFKAGRELNRAQSKSLVDKKDNALAAAYAKISQMCDGY 146
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L ++D A E+YK V D+K LRG++QE+I+AA ++I CR+ RT KE ++ N
Sbjct: 147 QLPKIVQDGAKEVYKMVYDEKRLRGKSQESIMAASIFIGCRKAKVARTFKEIWALTN-VP 205
Query: 181 KKEIGR 186
KKEIG+
Sbjct: 206 KKEIGK 211
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 106/194 (54%), Gaps = 7/194 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + GS L+ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--VQGSDVKLTRELNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ RT KE S+ N K
Sbjct: 146 LPRIVKDCAKEAYKLCFEERALKGKSQESIMASVILVGCRRAEVGRTFKEILSLTN-VRK 204
Query: 182 KEIGRAKEFIVKHL 195
KEIG+ I K L
Sbjct: 205 KEIGKTFNIIKKIL 218
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 110/204 (53%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + G+ IC +CGLVLE +D+ +EWR+F+ E D R G P+
Sbjct: 12 CTECASRN-LVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQ-RARTGAPMTV 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISA 115
+L GLST I S + +S + K Q RS + +RNL A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ RL L +I++ A YKK + + +RGR+ E + AA LY ACRQ + PRT+ E
Sbjct: 130 MASRLDLPKSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIGE- 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
A+ T +KEIGR F+V+ L+ ++
Sbjct: 189 ASRTGRKEIGRTYRFMVRELKMKI 212
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 6/184 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAK-PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
NPLL LST+I+ P + L+ + K D L A++ IS M + L
Sbjct: 85 NPLLDTEDLSTMISYVPENSRAGRELNRAHQKNTV--DKKDNALAAAYQKISQMCEGYQL 142
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++D A E+YK V D+KPLRG++QE+I+AA ++I CR+ R+ KE ++ N +K
Sbjct: 143 PKIVQDGAKEVYKMVHDEKPLRGKSQESIMAASIFIGCRKAKVARSFKEIWALTN-VPRK 201
Query: 183 EIGR 186
EIG+
Sbjct: 202 EIGK 205
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS-DHDPVRVGGPL 63
C DCK +V + S+GD +C CGLV+ +D SEWR FAN+ + DP RVG
Sbjct: 22 CPDCKEYPPNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGESA 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L + GL T + A G L+G L + +S N L + +++IS + D +
Sbjct: 82 NALANDEGLRTQVDMRAANGR---LAGKLNSINKKSQSEKLNSDLQEGYRAISTLVDMMQ 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ A+ IYK + L+G+ +EA++A C++IACRQ PRT +E ++ TK
Sbjct: 139 TAPIVNTTASHIYKLAYENGQLKGKPREAVIAGCIFIACRQCGVPRTFREIYAITR-VTK 197
Query: 182 KEIGRAKEFIVKHLEA 197
KEIGR + K LE+
Sbjct: 198 KEIGR----VFKSLES 209
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ L + Q++S D L A+ IS M D
Sbjct: 85 NPLLDTEDLSTMISYVPENVKA---GRELNRAQSKSLVDKKDNALSAAYAKISQMCDGYQ 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V D++ LRG++QE+I+AA ++I CR+ RT KE ++ N K
Sbjct: 142 LPKIVQDGAKEVYKLVHDERLLRGKSQESIMAAAIFIGCRKAKVARTFKEIWALTN-VPK 200
Query: 182 KEIGRAKEFIVKHLE 196
KEIG+ + I + ++
Sbjct: 201 KEIGKVFKIIKRVIQ 215
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 107/194 (55%), Gaps = 7/194 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + A GS L+ L + Q++S D L ++ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--AQGSDVKLTRELNRAQSKSIVDKKDNELQASYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERALKGKSQESIMASVILLGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGRAKEFIVKHL 195
KEIG+ I K L
Sbjct: 205 KEIGKTLNIIKKIL 218
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D ++G+ C+ CG V+ D +EWR F+NE S RVG +
Sbjct: 14 CPSCGK-RKIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNEESSR--TRVGAGTSL 70
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLST+I K + + LSGS+ + QA SS DRNL QA +
Sbjct: 71 TMHDMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 129
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ +VAACLY ACR PRT+ +
Sbjct: 130 KLKDKLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDM-- 187
Query: 175 VANGTT--KKEIGRAKEFIVKHLEAEM 199
ANG +K++ R I + LE +M
Sbjct: 188 -ANGINIRRKDVARCYRLIFRELELKM 213
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 108/195 (55%), Gaps = 8/195 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL LST+I+ + L + Q++S D L A+ +S M D
Sbjct: 85 NPLLDTEDLSTMISYVPENTK---VGRELNRAQSKSLVDKKDNALAAAYSKLSQMCDGYQ 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L ++D A E+YK V +++PL+G++QE+I+AA ++I CR+ R+ KE ++ N +
Sbjct: 142 LPKIVQDGAKEVYKLVYEERPLKGKSQESIMAAAIFIGCRKAKVARSFKEIWALTN-VPR 200
Query: 182 KEIGRAKEFIVKHLE 196
KEIG+ + + K ++
Sbjct: 201 KEIGKVFKIMNKIIQ 215
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 7/185 (3%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK V + S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKIYPPKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + A GS + L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLSTRIGQ--AQGSDVKFTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKICYEERALKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VKK 204
Query: 182 KEIGR 186
KEIG+
Sbjct: 205 KEIGK 209
>gi|255540855|ref|XP_002511492.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550607|gb|EEF52094.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 90
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 69/103 (66%), Gaps = 15/103 (14%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
MADSYC DC R+TE+V DHSAGDTIC+ECGL R AN+SSDH P RVG
Sbjct: 1 MADSYCTDCMRVTEIVMDHSAGDTICAECGL-------------RTSANQSSDHGPNRVG 47
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPD 103
P+NPLL+ GGL+TVI+K T S L S SLGK R+S PD
Sbjct: 48 APVNPLLANGGLTTVISKTTK--SNALFSASLGKWPNRASDPD 88
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 5/182 (2%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V + +GD +C CGLVL VD SEWR FAN+ D DP RVG +
Sbjct: 31 CPECRDPNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAASD 89
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
L L T I+ GGS +++SS +RNL+ AF+ I + D+ L
Sbjct: 90 -LEGIEQLDTAISF-RDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPK 147
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
TI D A ++YK+ +++K LRG+ EA++AAC++IACRQ + PRT +E C++ + +KK +
Sbjct: 148 TISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVPRTFREICNLTH-VSKKTL 206
Query: 185 GR 186
G+
Sbjct: 207 GQ 208
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T I + A GS ++ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLTTRIGQ--AQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGR 186
KEIG+
Sbjct: 205 KEIGK 209
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 9/205 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DC++ ++V S GD IC CGLVL VD SEWR F N+ + DP RVG
Sbjct: 21 CPDCRQFPPDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGDDPSRVGDSG 80
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
NPLL LST+I+ GG+ + L ++Q +S +N L A+ I + +
Sbjct: 81 NPLLDTEDLSTMISYVPQGGNR--VGRDLTRIQQKSLVDKKNNALNAAYIRIQELCNGYQ 138
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A +YK V + K LRG++Q++I+AA + + CR+ + PRT++E ++ N +K
Sbjct: 139 LPKTVTDAAKHLYKAVREDKLLRGKSQDSIMAAVILLGCRRSDVPRTLEEIRALTNVPSK 198
Query: 182 K--EIGR-AKEFIVKHLEAEMGQSV 203
+ ++ R K+ I HL A S+
Sbjct: 199 QIAKVARLIKKIIHSHLVANPQSSI 223
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAA 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G ST++ + L + Q ++ D + AF I+ + D
Sbjct: 84 NPLLDGNNLSTRIGQ---GESTDMRFTKELNRAQGKNVMDKKDHEVQAAFAKITMLCDAA 140
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K LRG++ E+++AA + I CR+ + RT KE S+ + T
Sbjct: 141 ELPKIVKDCAKEAYKLCHDEKSLRGKSSESVMAASILIGCRRASVARTFKEIQSIIHVKT 200
Query: 181 KKEIGR 186
KE G+
Sbjct: 201 -KEFGK 205
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 14/188 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +++ S GD +C CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 27 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGDDPSRVGDAG 86
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL LST+I+ T G L + Q +S D L A+ IS M D
Sbjct: 87 NPLLDTEDLSTMISYVPDNTKAGR------ELTRAQQKSLVDKKDNALAAAYVKISQMCD 140
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++D A E+YK V ++K LRG++QE+I+AA ++I CR+ R KE ++ N
Sbjct: 141 GYQLPKIVQDGAKEVYKMVYEEKSLRGKSQESIMAASIFIGCRKAKVARLFKEIWALTN- 199
Query: 179 TTKKEIGR 186
KKEIG+
Sbjct: 200 VPKKEIGK 207
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G ST++ + L + Q ++ D + AF I+ + D
Sbjct: 86 NPLLDGNNLSTRIGQ---GESTDVRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAA 142
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K LRG++ E+I+AA + I CR+ + RT KE S+ + T
Sbjct: 143 ELPKIVKDCAKEAYKLCHDEKSLRGKSSESIMAASILIGCRRASVARTFKEIQSIIHVKT 202
Query: 181 KKEIGR 186
KE G+
Sbjct: 203 -KEFGK 207
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++V D GD +C++CG+V +D EWR F N+ S +DP RVGG +NP
Sbjct: 14 CGECGS-TDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
LL GL+T I++ AG + L+ L + Q+R+ DR + + + IS + +R GL
Sbjct: 73 LLD-SGLATSISQGPAGANA--LNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLP 129
Query: 124 TTIKDRANEIYKKVEDQKPL-------RGRNQE----AIVAACLYIACRQENKPRTVKEF 172
+KDRA E+ + D L R R +E +I++A L+IACR E PRT E
Sbjct: 130 QLVKDRACELLRLYYDHLTLGADGVRARARFREDETASIISAALFIACRNEGFPRTFNEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLV 215
SV K + VK +E +G++ ++ I +D V
Sbjct: 190 -SVIVSVAKSRVA----AYVKAMEMSIGEAAKISRIRTTDDFV 227
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 10 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 67
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 68 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 124
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 125 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 184
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 185 KT-KEFGK 191
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSG--GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGSGASRDLQRTMNRA---TGTRDRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGR 186
K IG+
Sbjct: 222 KHIGQ 226
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSG--GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRA---TGTRDRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGR 186
K IG+
Sbjct: 222 KHIGQ 226
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 9/185 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ VV + S+GD +C +CGLVL VD SEWR FAN+ D DP RVG N
Sbjct: 20 CPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDEGD-DPSRVGAANN 78
Query: 65 PLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
PLL G T+I+ + G+T + S L + A+SSH +R L+ AF+ IS+M+D++
Sbjct: 79 PLLDGVDEFETMIS--SRDGNTGI-SRELQRATAKSSHGRSERGLLNAFRDISSMADQIS 135
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +I D A ++YK+V+++K LRG++ +AI+AAC++IACRQ PRT KE + K
Sbjct: 136 LPRSIADIAKQLYKRVDEEKLLRGKSTDAIIAACIFIACRQAGVPRTFKEVWGLTR-VPK 194
Query: 182 KEIGR 186
K IG+
Sbjct: 195 KVIGQ 199
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 13/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++V D+ G+ ICS CGLV++ +DE EWR F +E ++ R G P+
Sbjct: 14 CPECGS-SQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESR-ARTGSPMTY 71
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 72 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 131
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA +Y ACR N PRT+ E SV
Sbjct: 132 MTSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 191
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
KKEIGR + ++L+
Sbjct: 192 TR-VKKKEIGRTYRIMARYLK 211
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 47 CRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 105
Query: 65 PLLSG--GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + + DRN++ AF+ I D +
Sbjct: 106 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRA---TGTRDRNMLDAFEDIQRKCDSIH 162
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 163 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 221
Query: 182 KEIGR 186
K IG+
Sbjct: 222 KHIGQ 226
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C TE++ D+ + +C+ CGLV++ VD EWR F +E D RVG P+
Sbjct: 12 TVCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPI 69
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST+I K G + + L K Q + S +RNL A +
Sbjct: 70 TYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSEL 129
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S RLGL ++++ A+ +Y+ D K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 130 DRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ TKKE+GR F+ + L ++
Sbjct: 190 EVSR-VTKKEVGRTYRFLTRELNIKL 214
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKALKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 8/182 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V + GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 37 CPECKVYPPKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 96
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T++ + L + Q ++ D + AF I+ +SD
Sbjct: 97 NPLLDGNNLSTRIGQ---GENTDMRFTKELNRAQGKNVVDKKDNEVHAAFAKITMLSDAA 153
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 154 ELPKIVKDCAKEAYKLCHDEKSLKGKSTESIIAASILIGCRRAEVARTFKEIQSIIHVKT 213
Query: 181 KK 182
K+
Sbjct: 214 KE 215
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 13/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++V D+ G+ +CS CGLV++ +DE EWR F +E S+ R G P+
Sbjct: 15 CPECGS-SQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESR-ARTGSPMTY 72
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 73 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 132
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ + IY+K Q +RGR+ E +VA +Y ACR N PRT+ E SV
Sbjct: 133 MASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASV 192
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
KKEIGR + ++L+
Sbjct: 193 TR-VKKKEIGRTYRIMARYLK 212
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E + RVG P+
Sbjct: 33 CPECGS-PRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRS-RVGAPVTY 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 91 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K D+ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 151 MASALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 210
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ +KEIGR FI + L
Sbjct: 211 SR-VDRKEIGRTYRFIAREL 229
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E D RVG P+
Sbjct: 30 CPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ +KEIGR FI + L
Sbjct: 208 SR-VDRKEIGRTYRFITREL 226
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGL ++ +A EI KK E+++ GR + AA LY+A + RT +E VA T
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 180 TKKEIGRAKEFIVK 193
R KE K
Sbjct: 306 EVTIRNRYKELAEK 319
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E ++D+ EWR F E + RVGGPLN + G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI A G T E+L +++AR S DRNL QA + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 195
Query: 184 IGRAKEFIVKHLE 196
+ R I++ L+
Sbjct: 196 VARCYRLILRELD 208
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK +++ S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 23 CPDCKLFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDPSRVGEAS 82
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSD 118
N L L+T+I A P GS +L K+Q +S +N L A++ IS + +
Sbjct: 83 NSLYDTEDLTTMISYTANPGGSGS----KNNLNKIQQKSLVDKKNYALQAAYQRISELCN 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L ++ D A +YK V D + L+G++Q+AI+A+ + + CR+ PRT++E ++ N
Sbjct: 139 GYQLPKSVSDAAKHLYKAVRDDRLLKGKSQDAIMASTILLGCRRAEVPRTLEEIRALTNV 198
Query: 179 TTKK--EIGR-AKEFIVKHLEAE------MGQSVEMGTIHASDYLVIF 217
TK+ +I R K+ I HL ++ + ++ + T A D + F
Sbjct: 199 PTKQIAKITRLIKKIIHSHLNSDDAAAAIVDETTNLTTHSAEDLIRRF 246
>gi|357116817|ref|XP_003560173.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 331
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 38/249 (15%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC C+R+T V D T+C+EC LVL VDE+ EWR F N + + ++
Sbjct: 10 YCKGCRRVTAVTVD-----TVCTECSLVLNERYVDESLEWRTFLNHGTPAEAEDSSSRVD 64
Query: 65 P-LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQA-------------- 109
L+ L T ++ P A G+ ++ + +L +++ +
Sbjct: 65 DHFLTNLQLGTGVSGPAASGNAQMKT-ALPRMRGAGAGGSGVATAKTRGAAAAASDRALA 123
Query: 110 --FKSISAMSDRLGLVTTIKDRANEIYKKVEDQK--PLRG--RNQEAIVAACLYIACRQE 163
F ++ M+++LGL T +KDRA E+ +K+E K P G RN+ A+ AACL++ACR E
Sbjct: 124 DAFHAMDGMAEQLGLATAVKDRAKEVLRKLEVAKAFPKGGKCRNRRALYAACLHMACRDE 183
Query: 164 NKPRTVKEFCSVANGTT---KKEIGRAKEFIVKHL-------EAEMGQSVEMGTI-HASD 212
PRT KE SV + K+IGR + I HL E ++E G I A D
Sbjct: 184 GTPRTFKELASVTGDSVTAGTKDIGRLVKHIKNHLGDQDQDAEGMQATALEKGAIVRAGD 243
Query: 213 YLVIFLLNI 221
YL F L +
Sbjct: 244 YLCRFGLQL 252
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+VFD G+ IC+E G VLE V++ EWR F E + R+GGPL+P + GL+T
Sbjct: 26 IVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKEKRS-RIGGPLSPTVHDRGLTT 84
Query: 75 VI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I K E L ++++R S DRNL QA + +S++L L
Sbjct: 85 LIDWRDRDASGKKLEPKKRLEFLRYRKWQIRSRIQSSIDRNLAQAMNELDRLSNQLHLNR 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A IY+K ++ +RGR+ E+++AA +Y+ACR + PRT+ E S+ +KEI
Sbjct: 145 AVREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLKKLPRTLDEI-SLHTRANRKEI 203
Query: 185 GRAKEFIVKHLE 196
R +VK L+
Sbjct: 204 ARCYRLLVKELQ 215
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ +C ECGLV+E ++D EWR F N S + RVG P + GL+T I
Sbjct: 40 GELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTKTMHDKGLTTQIDWKDK 98
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 99 DAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 158
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+Y++ ++ +RGR+ E + +CLY+ACRQE+ PR+++E V+ KKEIGR +I
Sbjct: 159 VVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVADVSR-VEKKEIGRTYRYI 217
Query: 192 VKHLEAEMGQSVEMGTIHASDYLVIF 217
+ L S+EM + +Y+ F
Sbjct: 218 AQEL------SLEMKPVDPKEYVPRF 237
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +K+ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + ++L+ + S A DY+ F
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRF 228
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T+C ECGLV+E S+D EWR F N + + RVG P
Sbjct: 31 DIACPECS--GDLVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAP 87
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLST I LSG + R + +RNL QA
Sbjct: 88 TTNMMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I MS LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ N PR++ E
Sbjct: 148 IERMSSALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+V+ + EI R ++V+ L E+
Sbjct: 208 ANVSR-VERDEIARTYRYVVRELGLEVA 234
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +V D + G+ CS+CGLV+ D +EWR F+NE + + R G +
Sbjct: 15 CGDKK----MVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNE--EGNKARTGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK + + +GD +C++CGLV+ +D SEWR FANE D DP RVG N
Sbjct: 42 CRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAASN 100
Query: 65 PLLSG--GGLSTVIAKPTAG-GSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
PLL G L + I G G++ L ++ + + DR+++ AF+ I D +
Sbjct: 101 PLLDGINEQLESRIGYRDGGTGASRDLQRTMNRA---TGTRDRHMLDAFEDIQRKCDSIH 157
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+ D A + Y++VE++K LRG+ +AI+AA +Y+AC+ + PRT E CS+ + +K
Sbjct: 158 LPRTVSDVAKQAYRRVEEEKILRGKKPDAIIAAAIYVACKMNHVPRTFPEICSLTS-VSK 216
Query: 182 KEIGR 186
K IG+
Sbjct: 217 KHIGQ 221
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 41 ETKCPECGS-KKLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 98
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 99 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 158
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ TKKE+GR F+ + L ++
Sbjct: 219 AEVSR-VTKKEVGRTYRFLTRELNIKL 244
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VDE EWR F + RVG P + LL GL
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ EA++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 188 KEFIVKHL 195
FI +HL
Sbjct: 190 FRFIARHL 197
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +E + G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + ACLY ACRQE PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + LE +M
Sbjct: 204 SR-VEQKEIGRTYRYVAQELELKM 226
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +E + G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + ACLY ACRQE PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + LE +M
Sbjct: 204 SR-VEQKEIGRTYRYVAQELELKM 226
>gi|241842222|ref|XP_002415383.1| transcription initiation factor iib, putative [Ixodes scapularis]
gi|215509595|gb|EEC19048.1| transcription initiation factor iib, putative [Ixodes scapularis]
Length = 159
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
Query: 94 KLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAI 151
K Q R S DR L+ AF+ IS M+DR+ L TI DR+N ++K+V D K L+GR+ +AI
Sbjct: 18 KYQNRKTMSSSDRALVNAFREISNMADRINLTKTIVDRSNLLFKQVHDGKTLKGRSNDAI 77
Query: 152 VAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K LE +
Sbjct: 78 ASACLYIACRQEGVPRTFKEICAVSK-VSKKEIGRCFKLILKALETSV 124
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +C+ ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 24 CPECRVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF I+ + D
Sbjct: 84 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 142 LPKIVKDCAKEAYKLCHDEKSLKGKSTESIMAASILIGCRRAQVARTFKEIQSIIHVKT- 200
Query: 182 KEIGR 186
KE G+
Sbjct: 201 KEFGK 205
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 21/209 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH--DPVRVG 60
++ C +C+R TE++ H GD +C+ CG V+ +D SEWR FAN+ + DP R+G
Sbjct: 23 ETMCPECRRPTEILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIG 82
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
+NPLL+G L+T +A+ G + E + S + ++ DR L +AF+ I +R+
Sbjct: 83 SAVNPLLNGSDLTTTMAQ---GFNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERM 139
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEA--------------IVAACLYIACRQENKP 166
L + I +A +I+K++E+ R RN A + AA L++ACR E
Sbjct: 140 HLPSNITLKAKQIFKQMEEHY-TRERNGAASQFGAIVGGKGAKAVAAASLFLACRLEKVS 198
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
RT KE +V++ ++EI RA I + L
Sbjct: 199 RTYKEITAVSH-VREQEISRASSEIKRIL 226
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +V D + G+ C +CGLV+ + +EWR F+N+ S+ RVG +
Sbjct: 15 CGDKK----MVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSNDESNR--TRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLST+I + + LS S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L ++ ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C+ +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 41 ETKCPECQS-EKLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 98
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 99 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 158
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 159 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 218
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ +KKE+GR F+ + L
Sbjct: 219 AEVSR-VSKKEVGRTYRFLTREL 240
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C T +V D+ G+ +C +CGLV++ +D+ EWR F +E D R G P+
Sbjct: 14 TRCPECGS-THLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSR-TRTGAPM 71
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST I+ K + G + S + L K Q R S+ +RNL QA + +
Sbjct: 72 TYTIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQEL 131
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
MS LGL +++ A IY+K + +RGR+ E +VAA +Y ACR PRT++E
Sbjct: 132 ERMSSNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIS 191
Query: 174 SVANGTTKKEIGRAKEFIVKHLE 196
+V K+EIGR + + L+
Sbjct: 192 TVTR-IKKREIGRVYRIMSRTLK 213
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 9/186 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 25 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 84
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T++ + L + Q ++ D + AF I+ + D
Sbjct: 85 NPLLDGNNLSTKIGQ---GETTDMRFTKELNRAQGKNVLDKKDNEIQAAFAKITMLCDAS 141
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+I+AA + + CR+ RT KE S+ + T
Sbjct: 142 ELPKIVKDCAKEAYKLCHDEKALKGKSSESIMAASILLGCRRAEVARTFKEIQSIIHVKT 201
Query: 181 KKEIGR 186
KE G+
Sbjct: 202 -KEFGK 206
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C T +V D+ G+ +C +CGLV++ +D+ EWR F +E D R G P+
Sbjct: 14 TRCPECGS-THLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRS-RTGAPM 71
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST I+ K + G S S + L K Q R S+ +RNL QA + +
Sbjct: 72 TYTIHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQEL 131
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A IY+K + +RGR+ E +VAA +Y ACR PRT++E
Sbjct: 132 ERMASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIS 191
Query: 174 SVANGTTKKEIGRAKEFIVKHLE 196
+V K+EIGR + + L+
Sbjct: 192 TVTR-IKKREIGRVYRIMSRTLK 213
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC T + + S+GD +C+ECGLV+ A VD SEWR FAN+ + DP RVG N
Sbjct: 24 CNDCGVPTLLQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNE 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHPDRNLIQAFKSISAMSDRLG 121
+ L T + G++ + SL K+Q N I + D++
Sbjct: 84 IYGPSALETKVDMRRDQGASYKIMKSLNAANKKIQNEKGQAAIN--AGMAKIKDLVDKIH 141
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
+ +A ++++VE+ K L+G++ +A VA C++IACR E PRT +E ++ N +K
Sbjct: 142 GGGNVIKQAQSLFREVEEAKALKGKSADAAVAGCIFIACRMEKVPRTFREIHALTN-VSK 200
Query: 182 KEIGR 186
KEIGR
Sbjct: 201 KEIGR 205
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 98
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF I+ + D
Sbjct: 99 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNVVDKKDNEVQAAFAKITMLCDAAE 156
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D++ L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 157 LPKIVKDCAKEAYKLCHDERSLKGKSTESIMAASILIGCRRAEVARTFKEIQSIIHVKT- 215
Query: 182 KEIGR 186
KE G+
Sbjct: 216 KEFGK 220
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C T+++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 12 ETKCPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 69
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 70 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 129
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ PRT+ E
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L +
Sbjct: 190 ADVSR-VSKKEVGRTYRFLTRELHIRL 215
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 97/181 (53%), Gaps = 6/181 (3%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK V + S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGG--STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G +T L+ + GK D L F I+ + D
Sbjct: 86 NPLLDGNSLSTRIGQGEGGDLRATRDLNRAQGK--NVMDKKDNELQGVFAKITMLCDAAE 143
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA +++ CR+ + RT KE S+ + TK
Sbjct: 144 LPKIVKDCAKEAYKLCHDEKALKGKSTESIMAAAIFVGCRRADVARTFKEIQSIIHVKTK 203
Query: 182 K 182
+
Sbjct: 204 E 204
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 18/236 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 104 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 163
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T ++ L + QAR++ L F I
Sbjct: 164 PLLGSNHLDTMISHKD--GRTG-IARDLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 220
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 221 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 279
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL---VIFLLNIFKNFFFL 228
A +KKE+G+ + +++ Q M ++H S+ LL F N+ L
Sbjct: 280 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDL 334
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 101/187 (54%), Gaps = 8/187 (4%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E ++D S G+ +C++CG V+E VDE EWR F + RVG P + LL GLS
Sbjct: 14 EFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGLS 72
Query: 74 TVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
T I + G E + L K Q+R S +RNL A + ++ L L +++
Sbjct: 73 TDIGIDRSVTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASHLALPRHVEE 131
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 132 EAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSK-VDKKEIGRSF 190
Query: 189 EFIVKHL 195
FI +HL
Sbjct: 191 RFIARHL 197
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPSDYVNKFADELGLSEKVRKRAIELLEEAYNRGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEEERRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEM 199
+ R I++ L+ E+
Sbjct: 195 VARCYRLILRELDIEV 210
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 7/186 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 26 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I +A GS + L + Q ++ D L F ++ + D
Sbjct: 86 NPLLDGNSLSTRIG--SAEGSDARTTRDLNRAQGKNVMDKKDNELQAVFAKLTMLCDAAE 143
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+A+ + I CR+ RT++E S+ + T
Sbjct: 144 LPKIVKDCAKEAYKLCYDEKALKGKSTESIMASAILIGCRRAEVARTLREIQSIIHVKT- 202
Query: 182 KEIGRA 187
KE G++
Sbjct: 203 KEFGKS 208
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL A +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + A LY ACR+E+ PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATASLYTACRKEDIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ ++EIGR +I L
Sbjct: 200 VSR-VEQREIGRTYRYIADEL 219
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEM 199
+ R I++ L+ E+
Sbjct: 195 VARCYRLILRELDIEV 210
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 18/236 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL---VIFLLNIFKNFFFL 228
A +KKE+G+ + +++ Q M ++H S+ LL F N+ L
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDL 258
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 21 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 79
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 80 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 139
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 140 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 198
Query: 184 IGRAKEFIVKHLEAEM 199
+ R I++ L+ E+
Sbjct: 199 VARCYRLILRELDIEV 214
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 23/207 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +V D + G+ C CG V+ D +EWR FAN+ D R G +
Sbjct: 15 CGDRK----MVTDETTGELFCGRCGFVVTDKISDTGAEWRSFAND--DTSRARTGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + L+ S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMG 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY ACR PRT+ +
Sbjct: 128 KLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNTETPRTLDD--- 184
Query: 175 VANGTT--KKEIGRAKEFIVKHLEAEM 199
VANG +K++ R I + LE +M
Sbjct: 185 VANGINIRRKDVARCYRLIFRELELKM 211
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 18/236 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL---VIFLLNIFKNFFFL 228
A +KKE+G+ + +++ Q M ++H S+ LL F N+ L
Sbjct: 204 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDL 258
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
VA ++EIGR +I L+
Sbjct: 200 VAR-VEQREIGRTYRYIADELD 220
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 8 ETKCPECGS-EKLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 65
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 66 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 125
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 126 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 185
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L ++
Sbjct: 186 AEVSR-VSKKEVGRTYRFLTRELNIKL 211
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C CG V+ D +EWR FAN+ D + RVG +
Sbjct: 15 CGDKKMIT----DETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + L+ S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ G+ IC +CG V+E +D EWR F +E + RVG P+
Sbjct: 33 CPECGS-PRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRS-RVGAPITY 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GL+T+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 91 TIHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E
Sbjct: 151 MASALGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAQY 210
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ +KEIGR FI + L
Sbjct: 211 SR-VDRKEIGRTYRFIAREL 229
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 32 ETKCPECGS-EKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 89
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 90 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 149
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 150 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEI 209
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L ++
Sbjct: 210 AEVSR-VSKKEVGRTYRFLTRELNIKL 235
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
VA ++EIGR +I L+
Sbjct: 200 VAR-VEQREIGRTYRYIADELD 220
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+ IC +CGLV+E +D EWR F +E + RVG P+
Sbjct: 32 CPECGS-PRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRS-RVGAPITY 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 90 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 150 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 209
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ +KEIGR FI + L
Sbjct: 210 SR-VDRKEIGRTYRFIAREL 228
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPRPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C CG V+ D +EWR FAN+ D + RVG +
Sbjct: 15 CGDKKMIT----DETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + L+ S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 98
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G LST I + G+ + L + Q ++ D + AF ++ + D
Sbjct: 99 NPLLDGNNLSTRIGQ--GEGTDMRFTKELNRAQGKNIVDKKDNEVQAAFAKMTMLCDAAE 156
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ + T
Sbjct: 157 LPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFKEIQSIIHVKT- 215
Query: 182 KEIGR 186
KE G+
Sbjct: 216 KEFGK 220
>gi|294953373|ref|XP_002787731.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239902755|gb|EER19527.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 332
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G+T L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNTRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKEV- 184
Query: 186 RAKEF 190
AK F
Sbjct: 185 -AKNF 188
>gi|332025651|gb|EGI65813.1| Transcription initiation factor IIB [Acromyrmex echinatior]
Length = 308
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 7/122 (5%)
Query: 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159
S DR L+ AF+ I+ M+DR+ L TI DRAN ++K+V D K L+GR +AI +ACLYIA
Sbjct: 100 SSSDRTLLNAFREINGMADRINLPKTIVDRANTLFKQVHDGKNLKGRANDAIASACLYIA 159
Query: 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLL 219
CRQE PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F
Sbjct: 160 CRQEGVPRTFKEICAVSK-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCS 212
Query: 220 NI 221
N+
Sbjct: 213 NL 214
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + ++L+ + S A DY+ F
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRF 228
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
VA ++EIGR +I L+
Sbjct: 200 VAR-VEQREIGRTYRYIADELD 220
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + GLS
Sbjct: 14 KIVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 72
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I K G + E+L +++AR S DRNL QA + + + LGL
Sbjct: 73 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 132
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E +KE
Sbjct: 133 KSVKDEAALIYRKAVEKGLVRGRSIESVVAASIYASCRRIKIARTLDEIAQYTKA-NRKE 191
Query: 184 IGRAKEFIVKHLEAEM 199
+ R +++ L E+
Sbjct: 192 VARCYRLLLRELNVEV 207
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 16 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 74
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 75 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 134
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 135 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 193
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 194 VARCYRLLLRELD 206
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + +V G+ +C +CGL+++ ++D EWR F N S + RVG P
Sbjct: 20 CPECES-SALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQ 77
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 78 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D+ +RGR+ E + ACLY ACRQE+ PR+++E V
Sbjct: 138 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEVSEV 197
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
+ +KEIGR ++ + L S++M + Y+ F+
Sbjct: 198 SR-VEQKEIGRTYRYVAQEL------SLKMEPVDPKQYVPRFV 233
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 6 CADCKRLTEVVFDH-SAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK + + S GD +C+ CGLVL +D SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTE-LLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRL 120
NPLL G LST I + G +T+ + L + Q ++ D + AF I+ + D
Sbjct: 88 NPLLDGNNLSTRIGQ---GETTDSRFTKELNRAQGKNIVDKKDNEVQSAFAKITMLCDAA 144
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L +KD A E YK D+K L+G++ E+++AA + I CR+ RT KE S+ + T
Sbjct: 145 ELPKIVKDCAKEAYKLCNDEKSLKGKSTESVMAASILIGCRRAQVARTFKEIQSIIHVKT 204
Query: 181 KKEIGR 186
KE G+
Sbjct: 205 -KEFGK 209
>gi|294893167|ref|XP_002774359.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239879707|gb|EER06175.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 298
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G+T L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNTRLARTHM--IAVNSENVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDNGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEIRAAQPTVKDKEV- 184
Query: 186 RAKEF 190
AK F
Sbjct: 185 -AKNF 188
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++V D G+ +C++CGLV+E +D EWR F N S + RVG P
Sbjct: 31 CPECS-STDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVI--AKPTAGG---STELLSG--SLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I A G S+E S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ +I++ A+ IY++ D +RGR+ E + A LY ACR+E PR+++E V
Sbjct: 149 MSSALGVPRSIREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 209 SR-VERKEIGRTYRYISQELGLEM 231
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 22 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 79
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 80 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 139
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 140 AQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKST 182
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ ++EIGR +I L+ +
Sbjct: 198 VSR-VDQREIGRTYRYIADELDINL 221
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 79 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGISRSVEEVCDVSKST 181
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + S ++ RVG P
Sbjct: 28 DVVCPEC--TGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DASEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T+++ D G+ +C++CGLV++ S+D EWR F N S RVG P+
Sbjct: 24 CPECDS-TDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + + +G+ IC +CGLV+E ++D EWR F N S RVG P
Sbjct: 25 CPECD--STAISTDGSGELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D+ +RGR+ E + +CLY ACRQE PR+++E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEVSDV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L+ +M
Sbjct: 202 SR-VEQKEIGRTYRYVAQELKLKM 224
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ LGL I+D+A +++
Sbjct: 79 RIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALGLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+++E C+V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVGGISRSIEEVCTVSKST 181
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 18/236 (7%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +C++CG +L VD SEWR FA + + DP RVG N
Sbjct: 28 CPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 87
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLI--QAFKSISAMSDRLG- 121
PLL L T+I+ G T + L + QAR++ + + +SA+ R+G
Sbjct: 88 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 144
Query: 122 ------LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 145 KCDAMLLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL---VIFLLNIFKNFFFL 228
A +KKE+G+ + +++ Q M ++H S+ LL F N+ L
Sbjct: 204 ALKISKKELGQVFNQVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDL 258
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Query: 1 MADS-YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRV 59
MAD+ C +C TE +D S G+ C+ CG VLE VDE EWR F E + R
Sbjct: 1 MADTRVCPNCGS-TEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKR-ART 58
Query: 60 GGPLNPLLSGGGLSTVI--------AKPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQ 108
G P+ ++ GLST I P G + L Q R + +RNL
Sbjct: 59 GPPMTNMIHDKGLSTDIDWRDKDIHGNPITGVYRNKMR-RLRMWQRRMRINDAAERNLAF 117
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ ++GL +K++A +Y+K +K +RGR+ E +V+A LY ACR E PRT
Sbjct: 118 ALSELDRMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRT 177
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E + TKKEIGR+ F+ + L
Sbjct: 178 LDEIARFSK-VTKKEIGRSYRFMARGL 203
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 114/237 (48%), Gaps = 26/237 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V DH+ GD IC CGLV VD SEWR F N+ S DP RVGGP NP
Sbjct: 25 CKECGS-DDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNP 83
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLGLV 123
LL G STVI S L+ L + Q R +S DR L+ AF IS ++R L
Sbjct: 84 LLESGP-STVIGGGAVSDSRS-LNARLNRAQNRHNTSKSDRVLLDAFSLISQYAERSYLS 141
Query: 124 TTIKDRANEIYKKVEDQ---KPLRGRNQE-------AIVAACLYIACRQENKPRTVKEFC 173
+ DRA E++K D P GR + ++VAA L+ A + E PRT KE
Sbjct: 142 QRVVDRAQELFKLYFDHLTLNPQGGRTRYLKEHETVSVVAASLHWASQIEGVPRTFKEMS 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHAS--DYLVIFLLNIFKNFFFL 228
S+ K + +M QS+++ ++ S D++ F + FF+
Sbjct: 202 SLTQVPKK---------TLSDTYLKMKQSLKLNQLNKSTEDFIGRFCFYLRLPHFFI 249
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C EV+ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 25 CPECSS-EEVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A +
Sbjct: 83 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 143 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVAEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 203 SR-VPQKEIGRTYRYISQELGLEL 225
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 13/205 (6%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+ ++ C +C T +V G+ +C +CGLV++ VD EWR F + S RVG
Sbjct: 21 VVNNQCPECHS-TALVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAF-DHSERQSKSRVG 78
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P+ + GL+T I + LLS L K Q R D RNL A
Sbjct: 79 APVTQTMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFAL 138
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ ++++ A IY++ D +RGR+ E + + LYIACRQE PR+++
Sbjct: 139 SEIDRMASALGVPRSVREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQEGIPRSLE 198
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHL 195
E SVA ++EIGR +I L
Sbjct: 199 EVSSVAR-VDRREIGRTYRYIAHEL 222
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+++ C +C + +V G+ +C +CGL++E ++D EWR F N + RVG
Sbjct: 22 VSEQTCDECG-SSSLVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P + GL+T I LS L K Q R D RNL A
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ ++++ A+ IY++ D+ +RGR+ E + ACLY ACR+E PR+++
Sbjct: 140 SEIDRMASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLE 199
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E V+ +KEIGR +I + L S+ M + +Y+ F
Sbjct: 200 EIADVSR-VERKEIGRTYRYIAQEL------SLAMEPVDPKEYVPRF 239
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T ++ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 11 CPECES-TNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 69 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 129 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 188
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 189 SR-VPQKEIGRTYRYISQELGLEL 211
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C+ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETDT-IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 200 VSR-VDQREIGRTYRYIADELD 220
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T V+ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECE-STNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 16/208 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D+ C K ++FD G+ ICSE G V+E VD+ EWR F E + RVGG
Sbjct: 7 SDTQCPPDK----IIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGG 61
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFK 111
PLN + GLST+I K G + E+L +++AR S DRNL QA
Sbjct: 62 PLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + + LGL ++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E
Sbjct: 122 ELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+KE+ R +++ L ++
Sbjct: 182 IAQYTKA-NRKEVARCYRLLLRELNVDV 208
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +H G+T+C+ECGLV+E +D EWR F N S + RVG P
Sbjct: 33 CPECGGRLDADTEH--GETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T+++ A+ IY++ ++ L GR+ E + A LY A RQ N PR++ E
Sbjct: 147 IDRMASALGLPKTVRETASVIYRRALEENLLPGRSIEGVATASLYAAARQANTPRSLDEM 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++V+ L E+
Sbjct: 207 TAVSR-VEKMELTRTYRYVVRELNLEI 232
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|218199682|gb|EEC82109.1| hypothetical protein OsI_26126 [Oryza sativa Indica Group]
Length = 341
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 31/235 (13%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE--AYSVDETSEWRIFANESSDHDPVRVG- 60
SYC C+R T +V DH+ GD IC+ C L A + E WR A
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPLNPLLSGG-GLSTVIA----KPTAGGST----ELLSGSLGKLQARSSHP 102
+PLL GG G++ + +P G+ ++ +G + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPTKVRCGVP 128
Query: 103 D--RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIA 159
D + L + F +I+ M+ RLGL + DRA E+ +K+E+ + +GR+++A+ AACL+ A
Sbjct: 129 DTSKALAEGFDAIAGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 160 CRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD 212
CR E PRT+KE + + TK+++G+ I +HL E E G A+D
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGME-----ERGQDQAAD 238
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T V+ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D S + +C +CGLVLE +D EWR F N S RVG P
Sbjct: 25 CPECNSAN-VITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLS----GSLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S + L K Q R D RNL A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + ACLY ACRQE PRT++E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
A +KEIGR ++ + L S+E+ +YL F ++
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDL 239
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 107/202 (52%), Gaps = 21/202 (10%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C +R E D + G+ IC ECG V++ +DE++EWR F N R G PL
Sbjct: 58 CPECGSQRFEE---DSAKGELICIECGFVMDEDRIDESAEWRAF-NAEEKEKKARAGQPL 113
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSI 113
G+ST I K GS EL +SG+ L K R + DRNL A +
Sbjct: 114 TYTKHDMGVSTEIGK----GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSEL 169
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++M L L ++ + +Y+K DQ +RGR+ E+I++A +YI R++ PRT+ E
Sbjct: 170 NSMISNLNLPESVHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGTPRTLDEI- 228
Query: 174 SVANGTTKKEIGRAKEFIVKHL 195
S A+G K+EIGRA ++ + L
Sbjct: 229 SDASGIEKREIGRAYRYVAREL 250
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G V+E VD+ EWR F E + RVGGPLN + GLS
Sbjct: 16 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 74
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I K G + E+L +++AR S DRNL QA + + + LGL
Sbjct: 75 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLGLP 134
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E +KE
Sbjct: 135 KSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDEIAQYTKA-NRKE 193
Query: 184 IGRAKEFIVKHLEAEM 199
+ R +++ L ++
Sbjct: 194 VARCYRLLLRELNVDV 209
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E PR+++E +
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTA 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR ++ L+
Sbjct: 200 VSR-VDQREIGRTYRYVADELD 220
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDNLSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 200 VSR-VDQREIGRTYRYIADELD 220
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T+++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 50 CPECE-STQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 107
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 164
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D++ L GR+ E + A LY A RQ PR++ E
Sbjct: 165 VDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ + EI R ++V+ L+ ++
Sbjct: 225 TNVSR-VGRDEIARTYRYVVRELKLQI 250
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 79
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 80 QSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ DQ +RGR+ E + + LY ACR+E PR+++E
Sbjct: 140 RMVSALGVPKPVKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTG 199
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 200 VSR-VDQREIGRTYRYIADELD 220
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 13/208 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
ADS C C + ++ D+ G+ C +CG V+ D EWR F+ E DP R G
Sbjct: 12 ADSTCGRCGK-NSMLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGG-ADPTRTGA 69
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGS-TELLSGSLGKLQARSSHP------DRNLIQAFK 111
P + + GL+T+I+ K ++G T + ++ +L+ S D+NL QA
Sbjct: 70 PTSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALS 129
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+S + D+L L + ++A+ IY+K ++ ++GR+ A++AA LY ACR PRT+K+
Sbjct: 130 ELSTLKDKLSLSDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDTETPRTLKD 189
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
N KK+I R + + LE +M
Sbjct: 190 VSDAGN-IKKKDISRCYRILHQELELKM 216
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T+++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 50 CPECE-STQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 107
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 164
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D++ L GR+ E + A LY A RQ PR++ E
Sbjct: 165 VDRMASALGLPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ + EI R ++V+ L+ ++
Sbjct: 225 TNVSR-VGRDEIARTYRYVVRELKLQI 250
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T ++ D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V + + + IC ECGLV+E ++D EWR F N + + RVG P + GL+T
Sbjct: 40 LVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQTMHDKGLTT 98
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVT 124
I +S L K Q R D RNL A I M+ LG+
Sbjct: 99 QIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPR 158
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
++++ A+ IY++ + +RGR+ E + +CLY CRQE PR+++E V+ KKEI
Sbjct: 159 SVREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVTEVSR-VGKKEI 217
Query: 185 GRAKEFIVKHLEAEM 199
GR +I K L EM
Sbjct: 218 GRTYRYIAKELSLEM 232
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A+ C +C + +V + +C +CGLV+E ++D EWR F N S RVG
Sbjct: 26 AERVCPECNSDS-LVRSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGA 83
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFK 111
P + GL+T I LS L K Q R D RNL A
Sbjct: 84 PTTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALS 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I MS LG+ ++++ A+ +Y++ + +RGR+ E + CLY ACRQE PR+++E
Sbjct: 144 EIDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
V+ +KEIGR ++ + L S+E+ + +Y+ F
Sbjct: 204 VAEVSR-VERKEIGRTYRYVAQEL------SLELKPVDPQEYVPRF 242
>gi|294896448|ref|XP_002775562.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881785|gb|EER07378.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 307
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G++ L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNSRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
I R +I K+++D L+G+ + A Y+ACRQE R++KE + KE+
Sbjct: 126 IYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILAAQPTVKDKEV- 184
Query: 186 RAKEF 190
AK F
Sbjct: 185 -AKNF 188
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 108/204 (52%), Gaps = 15/204 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGP 62
+ C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG P
Sbjct: 21 ALCPDCETET-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAP 77
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKS 112
L + GL+T I + +S G L +L+ R+ + +RNL A
Sbjct: 78 LTQSMHDRGLTTTIDWRNRDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E
Sbjct: 138 IDRMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEV 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLE 196
+V+ ++EIGR +I L+
Sbjct: 198 TAVSR-VDQREIGRTYRYIADELD 220
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 CPEC--AGQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 106/211 (50%), Gaps = 20/211 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ E V+ K EI R ++V+ L E+
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E PR+++E S
Sbjct: 138 RMVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEGIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC T ++ D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCDTAT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDQLSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 138 RMVSALGVPKPVKETASVIYRRALEQDLIRGRSIEGVATSSLYTACRKEDIPRSLEEVTA 197
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 198 VSR-VDQREIGRTYRYIADELD 218
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAP 87
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 144
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 145 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 204
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 205 DEIADVSR-VEKNEIARTYRYVVRELGLEV 233
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 29 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 85
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 142
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 143 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 202
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 203 DEIADVSR-VEKNEIARTYRYVVRELGLEV 231
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 16/204 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D+ C K ++FD G+ ICSE G V+E VD+ EWR F E + RVGG
Sbjct: 7 SDNECPQDK----IIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGG 61
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFK 111
PLN + GLST+I K G + E+L +++AR S DRNL QA
Sbjct: 62 PLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + + LGL ++KD IY+K ++ +RGR+ E++VAA +Y +CR+ RT+ E
Sbjct: 122 ELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+KE+ R +++ L
Sbjct: 182 IAQYTKA-NRKEVARCYRLLLREL 204
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK+ ++V S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 22 CPDCKQFPPDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L L+T+I+ ++ +L K+Q +S +N L A++ IS + +
Sbjct: 82 NSLYDNEDLTTMISY-APNSNSSGSKNNLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAAAILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 182 ---KEIGRAKEFIVKHLEAE 198
K G K+ I HL E
Sbjct: 201 QIAKVTGLIKKIIRSHLNNE 220
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 12/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 82
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ ++++ A+ IY++ D +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 143 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
A +KEIGR +I + L
Sbjct: 203 AR-VEQKEIGRTYRYIAQEL 221
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 107/211 (50%), Gaps = 20/211 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C ++V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDVVCPEC--AGQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ E V+ K EI R ++V+ L E+
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 20/206 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ K EI R ++V+ L
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL 226
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDKKEIGRS 189
Query: 188 KEFIVKHL 195
FI +HL
Sbjct: 190 FRFIARHL 197
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ +S +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGI 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE I K
Sbjct: 261 MEGERRTQREVAEVARVTEVTVRNRYKELIEK 292
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLPRHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSR-VDKKEIGRS 189
Query: 188 KEFIVKHL 195
FI +HL
Sbjct: 190 FRFIARHL 197
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ +S +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVSKFADELGLSEKVRRRAIELLEEAYEKGLTSGKSPAGLVAAALYIAGI 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE I K
Sbjct: 261 MEGERRTQREVAEVARVTEVTVRNRYKELIEK 292
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T++VF+ G+ +C+ CG ++ VD+ EWR F E + R G PL+P L GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVIAKPTAGGSTELLS-------GSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGL 122
STVI + LS L K Q R+ + DRNL A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
IK+ A IY+K ++ +RGR+ E++VAA +Y ACR ++PRT+ E +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 183 EIGRAKEFIVKHLE 196
E+ R I K L+
Sbjct: 195 EVARCYRLITKELK 208
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 20/206 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ K EI R ++V+ L
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL 226
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 20/206 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ K EI R ++V+ L
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVREL 226
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M + CA C + ++ D G+ C +CG V+ S + EWR F + DP R G
Sbjct: 7 MDNPTCARCGK-NSLLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTG 64
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAF 110
P + ++ GLSTVI S + LS S+ +L+ S DRNL QA
Sbjct: 65 APSSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQAL 124
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
++ + D++ + + ++A IY+K ++K +RGR+ A++AA LY ACR PRT+K
Sbjct: 125 SDLNKLKDKVSIPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLK 184
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ AN +K+I R + LE +M
Sbjct: 185 DVADAAN-VKRKDIARCYRLLHHELELKM 212
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 14/194 (7%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLNPLLSGGG 71
+++D G+ +C+ CG V+ +D EWR F A++ RVG P+ ++ G
Sbjct: 16 VRLIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRG--RVGAPMTMMIHDKG 73
Query: 72 LSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLG 121
LS+ I +SG+ L K Q R S +RNL A + M+ +LG
Sbjct: 74 LSSTIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLG 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L IK+ A +Y+K ++ +RGR+ E + AACLY ACR PRT+ E VA K
Sbjct: 134 LPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEEVAR-VDK 192
Query: 182 KEIGRAKEFIVKHL 195
KEIGR+ FI + L
Sbjct: 193 KEIGRSYRFIAREL 206
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+S +D+LGL K+RA +I +K GR + AA LYIA E + +T +E
Sbjct: 219 VSRFADQLGLSERTKNRAVKILQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREV 278
Query: 173 CSVANGTTKKEIGRAKEFI 191
VA+ T R KE +
Sbjct: 279 AEVAHVTEVTVRNRYKELV 297
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 34 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVRELGLEV 233
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ ++++ A+ IY++ D +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 147 MSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVADV 206
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
A +KEIGR +I + L
Sbjct: 207 AR-VEQKEIGRTYRYIAQEL 225
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 34 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 148 IDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 208 ADVSR-VEKNEIARTYRYVVRELGLEV 233
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C +CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCGDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ L L I+++A +++
Sbjct: 79 RIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C VA T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKAT 181
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +VV D G+ +C++CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECE-SGDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A +
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+ S C +C +++ DH + +C +CGLV++ +D EWR F +E + RVG
Sbjct: 6 LKGSVCPECGS-EDLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKR-TRVG 63
Query: 61 GPLNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAF 110
P+ + GLST+I K G S + L K Q + S +RNL A
Sbjct: 64 APVTYTIHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFAL 123
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
+ ++ RL L T+++ A+ IY+ +K +RGR+ E +VAA LY ACR+ N PRT+
Sbjct: 124 SELDRIASRLNLPRTVRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVPRTLD 183
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ G KK +GR F+ + L +
Sbjct: 184 EIAEVS-GVKKKGVGRTYRFLARKLNIRL 211
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +VV D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 23 CPECG-SDQVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 201 SR-VPQKEIGRTYRYISQELGLEL 223
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC+ T +V D G+ +C ECGLVL +D EWR F N ++ RVG PL
Sbjct: 21 CPDCETET-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLTQ 78
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSISA 115
+ GL+T I + +S G L +L+ R+ + +RNL A I
Sbjct: 79 SMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 138
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +V
Sbjct: 139 MVSALGVPKPVKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTAV 198
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
+ ++EIGR +I L+
Sbjct: 199 SR-VDQREIGRTYRYIADELD 218
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 44 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 100
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 101 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 160
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 161 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 220
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ ++EIGR +I L
Sbjct: 221 VSR-VDQREIGRTYRYIADEL 240
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +CS+CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I GS ++G L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KK
Sbjct: 126 PKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDKK 184
Query: 183 EIGRAKEFIVKHL 195
EIGR+ FI ++L
Sbjct: 185 EIGRSFRFIARNL 197
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ EWR FA E DP R G P + + GLST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKEGG-TDPTRTGAPTSLTMHDRGLST 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
VI++ + + LS S+ R +S D+NL QA +S + D+L L
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKLSLSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
++ ++A+ IY+K + ++GR+ A++AA +Y ACR PRT+K+ N KK+I
Sbjct: 120 SVNEKASYIYRKALENGLVKGRSISALIAASIYAACRDTETPRTLKDVADAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEM 199
R + LE +M
Sbjct: 179 SRCYRILHYELELKM 193
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C +CG V+ D +EWR F+N+ + + R G +
Sbjct: 27 CGDKKMIT----DENTGELFCGKCGFVVSDKIADTGAEWRSFSND--EGNKARTGAGTSL 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 81 TMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 139
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 140 KLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 199
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 200 GIN-IRRKDVARCYRLIFRELELKM 223
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D K +T D + G+ C +CG V+ D +EWR F+N+ + + R G +
Sbjct: 15 CGDKKMIT----DENTGELFCGKCGFVVSDKIADTGAEWRSFSND--EGNKARTGAGTSL 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSS-ADRNLRQALNEMD 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ + +VAACLY +CR PRT+ +
Sbjct: 128 KLKDKLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAK 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 188 GIN-IRRKDVARCYRLIFRELELKM 211
>gi|294896450|ref|XP_002775563.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881786|gb|EER07379.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 199
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +CK T++V D++ G IC CGL+LE +D++ EWR F+ +SS D RVGG N
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFS-DSSGPDRNRVGGTTNN 71
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+L GGL T + G++ L + + S + DR L + K + + D L L
Sbjct: 72 MLHSGGLGTSVGF----GNSRLARTHM--IAVNSDNVDRTLNKGHKILRDIMDALALPDN 125
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
I R +I K+++D L+G+ + A Y+ACRQE R++KE + A T KK+
Sbjct: 126 IYTRCCQILKQMDDSGLLKGKTNYPWLLAVTYMACRQEGAGRSIKEILA-AQPTVKKQ 182
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 106/211 (50%), Gaps = 20/211 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 27 SDLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P + GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ +GL T +++ A+ IY++ D+ L GR+ E + AC+Y A RQ PR+
Sbjct: 141 ALGEIDRMASAVGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTACVYAAARQAGVPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ E V+ K EI R ++V+ L E+
Sbjct: 201 LDEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C +CGLVL +D EWR F + +HD + RVG PL
Sbjct: 29 CPDCETET-IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 86 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 146 RMVSALGVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 205
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 206 VSR-VDQREIGRTYRYIADELD 226
>gi|34394694|dbj|BAC84000.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|222637101|gb|EEE67233.1| hypothetical protein OsJ_24371 [Oryza sativa Japonica Group]
Length = 362
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE--AYSVDETSEWRIFANESSDHDPVRVG- 60
SYC C+R T +V DH+ GD IC+ C L A + E WR A
Sbjct: 9 SYCQHCQRTTPMVLDHATGDAICTGCAFDLGNGANACPEPPRWRAAAGHGDSDGDRSSSS 68
Query: 61 ---------GPLNPLLSGG-GLSTVIA----KPTAGGST----ELLSGSLGKLQARSSHP 102
+PLL GG G++ + +P G+ ++ +G + R P
Sbjct: 69 SSVGGDVSPAAADPLLQGGEGVACSVGAPPVQPRVRGAVVPPKQMRAGGAVPPKVRCGVP 128
Query: 103 D--RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIA 159
D + L + F +I M+ RLGL + DRA E+ +K+E+ + +GR+++A+ AACL+ A
Sbjct: 129 DTSKALAEGFDAIVGMASRLGLADKVSDRAKEVLRKLEEARACPKGRSRDALYAACLHAA 188
Query: 160 CRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASD 212
CR E PRT+KE + + TK+++G+ I +HL E E G A+D
Sbjct: 189 CRVEGAPRTLKELIAATSDAAATKRDLGKFINAIKRHLGME-----ERGQDQAAD 238
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGG 61
+S C +C T++ +H G+T+C ECGLV+E +D EWR F ++S+ D RVG
Sbjct: 28 ESLCPECGGHTQLDAEH--GETVCEECGLVVEEDEIDHGPEWRAF--DASERDSKSRVGA 83
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P ++ GLST I K G S L S K+Q R S +RNL Q
Sbjct: 84 PTTKMMHDKGLSTNIGWQDKDAYGNS--LSSSQRQKMQRLRTWNERFRTRDSK-ERNLKQ 140
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ N PR+
Sbjct: 141 ALGEIDRMASALGLPKNVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQANNPRS 200
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+ E V+ + E+ R +I++ L E+
Sbjct: 201 LDEMTHVSR-VERMELTRTYRYIIRELGLEVA 231
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 106/212 (50%), Gaps = 20/212 (9%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+D C +C +V D G+TIC +CGLV+E SVD EWR F + + ++ RVG
Sbjct: 26 QSDLACPEC--AGNLVVDDEHGETICEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPLNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLI 107
P + GLST I K G S L S K+Q R S +RNL
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLK 139
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
QA I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR
Sbjct: 140 QALGEIDRMASALGLPTNVRETASVIYRRALNEDLLPGRSIEGVSTACVYAAARQAGVPR 199
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
++ E V+ K EI R ++V+ L E+
Sbjct: 200 SLDEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C +++ D G+ C CGLV++ +D EWR F NE D RVG P
Sbjct: 26 ETRCPECGS-EQIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKR-TRVGAP 83
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 84 MTYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 144 LDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ KKE+GR F+ + L ++
Sbjct: 204 AEVSR-VGKKEVGRTYRFLTRELNIKL 229
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 23 CPECG-SDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 201 SR-VPQKEIGRTYRYISQELGLEL 223
>gi|6980707|pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980709|pdb|1C9B|E Chain E, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980711|pdb|1C9B|I Chain I, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980713|pdb|1C9B|M Chain M, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980715|pdb|1C9B|Q Chain Q, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 207
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 7/119 (5%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQ
Sbjct: 2 DRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 61
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
E PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F N+
Sbjct: 62 EGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 113
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
+G+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 SGETVCNDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G L + R SS +RN + AF I ++ L L I+++A +++
Sbjct: 79 RIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALSLPNHIREQACALFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C VA T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGIARSVEEVCDVAKAT 181
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 27 CPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 84 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 144 RMVSALGVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 203
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ ++EIGR +I L
Sbjct: 204 VSR-VDQREIGRTYRYIADEL 223
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE FD + G+ +C CG VLE VDE EWR F + R G P+ ++ GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E V+ TKK
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSK-VTKK 190
Query: 183 EIGRAKEFIVKHL 195
EIGR+ F+ + L
Sbjct: 191 EIGRSYRFMARGL 203
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
+ K G S ++ LG L R + P + D LG+ + K RA EI +
Sbjct: 187 VTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKEILQ 238
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+ + G+ + AA LY+A E + +T +E VA+ T R KE + K
Sbjct: 239 EAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEK 296
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECG-SDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+ +C +CGLVL+ +D EWR F N S RVG P+
Sbjct: 24 CPECG-SDQIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+S C C + ++ D G+ C +CG V+ S + EWR F + DP R G P
Sbjct: 7 NSNCLRCGK-NSILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTGAP 64
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKS 112
+ ++ GLSTVI S + LS S+ +L+ S DRNL QA
Sbjct: 65 SSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSD 124
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ + D++ + + ++A IY+K ++K +RGR+ A++AA LY ACR PRT+K+
Sbjct: 125 LNKLKDKVSVPANVLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDTETPRTLKDV 184
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
AN +K+I R + LE +M
Sbjct: 185 SDAAN-VKRKDIARCYRLLHHELELKM 210
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKAT 181
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DLACPEC--TGHLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL T +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPTNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V + + + IC +CGL++E ++D EWR F N S RVG P
Sbjct: 28 CPECD-SADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 86 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 145
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ ++ IY++ + +RGR+ E + +CLY CRQE PR+++E V
Sbjct: 146 MASALGVPRSVREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIPRSLEEVAEV 205
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ KKEIGR ++ K L +EM + +Y+ F
Sbjct: 206 SR-VEKKEIGRTYRYVAKEL------GLEMKPVDPKEYVPRF 240
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKAT 181
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKAT 181
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-DDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L ++
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTRELNIKL 214
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 15/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C DC+ T +V D G+ +C ECGLVL +D EWR F + +HD + RVG PL
Sbjct: 21 CPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 77
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ +K+ A+ IY++ ++ +RGR+ E + + LY ACR+E+ PR+++E S
Sbjct: 138 RMVSALGVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTS 197
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ ++EIGR +I L
Sbjct: 198 VSR-VDQREIGRTYRYIADEL 217
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 6/174 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 23 CPECKVYPPKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAA 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR-NLIQA-FKSISAMSDRLG 121
NPLL G LST I + G + + L + Q+++ + N IQA F I+ + D
Sbjct: 83 NPLLDGNSLSTRIGQGEGGDARA--TRDLNRAQSKNVLDKKDNEIQAIFIKITMLCDVAE 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
L +KD A EIYK D + L+G++ E+++AA + + CR+ RT+ E S+
Sbjct: 141 LPKIVKDSAKEIYKLCYDSRALKGKSMESVIAAAILLGCRRAKVARTLTEVQSM 194
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 21/208 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C T +V D G+T+C ECGLV+E +VD EWR F +SS+ D RVG P
Sbjct: 35 CPECGS-TNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAF--DSSERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 92 NMMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 148
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 149 EIDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDE 208
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L+ E+
Sbjct: 209 ITNVSR-VGKDEISRTYRYVVRELKLEI 235
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++++D G+ IC G V+E +D+ EWR F E + R+GGPL + GL+
Sbjct: 23 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 81
Query: 74 TVI---AKPTAGGSTE----LLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLV 123
T I K G E L L + QARS S +RNL QA + +SD+L L
Sbjct: 82 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 141
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A IY++ ++ +RGR+ E+++AA +Y ACR+ PRT+ E S +++K+
Sbjct: 142 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKVPRTLDEI-SKHTKSSRKD 200
Query: 184 IGRAKEFIVKHLEAEMGQS 202
I R ++K L+ ++ S
Sbjct: 201 IARCYRLLLKELDIKVQTS 219
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + T +V DH +G+T CS+CG VL + + EWR F + +H D R G P +
Sbjct: 14 CPRCVKGT-LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQD--EHGDRARAGAPTS 70
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GL+T+I S + LS S+ +L+ S DRN QAF ++
Sbjct: 71 LTMHDMGLATIINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 130
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+
Sbjct: 131 RLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQ 190
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
AN +K+I R ++K L+
Sbjct: 191 AAN-IKRKDIARCYRLLIKELD 211
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FDH G+ +C E G V+E +DE +EWR F E + R GGP+ + G +
Sbjct: 26 KIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERERR-ARTGGPITGTVHDMGFA 84
Query: 74 TVI--AKPTAGGSTELLSGS----LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I A A G + + L K QAR+ S DRNL QA + +++ L L T
Sbjct: 85 TSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIAELLNLPT 144
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A IY+ ++ +RGR+ E+++AA +Y+ACR+ PR++ E +KEI
Sbjct: 145 HVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREARVPRSLDEITKYTR-IPRKEI 203
Query: 185 GRAKEFIVKHL 195
R +++ L
Sbjct: 204 ARCYRLLLREL 214
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
AG+T+C++CGLV+ Y +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 21 AGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTRSRHDRGLSTEIGRST 78
Query: 81 A-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
G + + R S+ +RN + AF I ++ L L I+D+A +++
Sbjct: 79 RIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALSLPNHIRDQACSLFES 138
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y ACR R+V+E C V+ T
Sbjct: 139 AQNEDLLRGRSLEGFAAACVYAACRVAGVSRSVEEVCDVSKST 181
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 12/193 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE FD + G+ +C CG VLE +DE EWR F + R G P+ ++ GL
Sbjct: 13 TEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRARR-ARTGAPMTLMIHDKGL 71
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ ++ L
Sbjct: 72 STDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRL 131
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E V+ TKK
Sbjct: 132 PRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSK-VTKK 190
Query: 183 EIGRAKEFIVKHL 195
EIGR+ F+ + L
Sbjct: 191 EIGRSYRFMARGL 203
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 76 IAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
+ K G S ++ LG L R + P + D LG+ + K RA EI +
Sbjct: 187 VTKKEIGRSYRFMARGLG-LNLRPTSP-------IDYVDRFGDALGVSSKTKQRAKEILQ 238
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+ + G+ + AA LY+A E + +T +E VA+ T R KE + K
Sbjct: 239 EAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEK 296
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 19 HSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAK 78
HS G+ IC +CGLVL+ ++D EWR F N S RVG P + GL+T I
Sbjct: 58 HSEGEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDW 116
Query: 79 PTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKD 128
LS L K Q R D RNL A + M+ LG+ ++++
Sbjct: 117 QNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDRMASALGVPDSVRE 176
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A+ IY++ ++ +RGR+ E + + LY ACRQE PR++ E V+ +KEIGR
Sbjct: 177 VASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSR-VPQKEIGRTY 235
Query: 189 EFIVKHLEAEM 199
+I + L E+
Sbjct: 236 RYISQELGLEL 246
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC T +FD+ G IC++CG V+ + +D EWR F E + R GGPLN
Sbjct: 42 YCGS----TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGPLN 96
Query: 65 PLLSGGGLSTVI--AKPTAGGSTELLSGSLGKLQAR--------SSHPDRNLIQAFKSIS 114
L S L+T I A A G + L L+ R + +RN+IQA +S
Sbjct: 97 RLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELS 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+S +LG+ D A IY++V + +RGR+ EAIVAACL++ACR+ PR++ E
Sbjct: 156 RISSQLGIPKACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQ 215
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
++KE+ R I + L
Sbjct: 216 YTRA-SRKEVARCFRLIAREL 235
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 12/199 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++++D G+ IC G V+E +D+ EWR F E + R+GGPL + GL+
Sbjct: 19 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 77
Query: 74 TVI---AKPTAGGSTE----LLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLV 123
T I K G E L L + QARS S +RNL QA + +SD+L L
Sbjct: 78 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A IY++ ++ +RGR+ E+++AA +Y ACR+ PRT+ E +++K+
Sbjct: 138 RNVKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACRELKIPRTLDEIAK-HTKSSRKD 196
Query: 184 IGRAKEFIVKHLEAEMGQS 202
I R ++K L+ ++ S
Sbjct: 197 IARCYRLLLKELDIKVQTS 215
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ +C +CG+VLE+ ++D EWR F D + RVG P
Sbjct: 31 CPECG--GTVTTDDGHGERVCEQCGVVLESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
LL GLST I S LS S + +R + DRNL QA I
Sbjct: 88 LLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ EF +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
+ +++ RA ++ + LE
Sbjct: 208 SR-VRRQKYARAYRYLARQLE 227
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 19 HSAG-DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
H+ G +T+C +CGLV+ Y++D EWR FA+++SD P R G PL GLST I
Sbjct: 23 HAEGRETVCGDCGLVVSEYAIDHGPEWRSFADDASD--PKRTGAPLTRSRHDRGLSTEIG 80
Query: 78 KPTA-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+ T G L + R S+ +RN + AF I ++ L L I+D A +
Sbjct: 81 RSTRLKGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIRDHACSL 140
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
++ + + LRGR+ E AAC+Y ACR N RTV E + A T ++
Sbjct: 141 FRSAQKEDLLRGRSLEGFAAACVYAACRAANVSRTVGEVVAEAKATRAEQTA-----AYD 195
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
L E+G + +G + ++Y+ F +
Sbjct: 196 ALNRELG--LPVGPVDPAEYVPRFATRL 221
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 20/210 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V+D G+ IC++ G V+ + +D EWR F E + R G P+N L GLST
Sbjct: 22 IVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRS-RAGAPINIALHDSGLST 80
Query: 75 VIA---KPTAGGSTELLSGSLGKLQARSSHP--------DRNLIQAFKSISAMSDRLGLV 123
VI + +AG +L L ++ R H DRN++QA + ++D+L L
Sbjct: 81 VIDWYDRDSAGRRLDL-KRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLP 139
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
I + A IY++ +++ +RGR E++VAA LY ACR PRT+ E S + +KE
Sbjct: 140 RVIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEI-SKYTKSGRKE 198
Query: 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDY 213
+ R +V+ L S+ + + A++Y
Sbjct: 199 VARCYRLLVREL------SLRIPIVDAAEY 222
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLN 64
C DCK++ + + +A DTIC+ CG+VL + SEWR F ++E DP RVG N
Sbjct: 31 CPDCKQVPPDLIEENA-DTICANCGMVLAERLISYESEWRTFNSDEGKGEDPNRVGEADN 89
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGL 122
LL T+I G + + L K QA + D+ L A+ + A ++ L
Sbjct: 90 ELLLTNNAGTMIG--GGGPNVSRETRKLKKAQAMQLENKADKALQAAYAQVEAWGEKAKL 147
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K A +K+V + LRG+ + I+A CL+IACRQ PR+ E + + KK
Sbjct: 148 TAPVKMAAKMYFKRVYEANALRGKQTDVILAGCLFIACRQLKTPRSFTEIFGLTS-VPKK 206
Query: 183 EIGRAKEFIVKHL 195
EIGRA + + K L
Sbjct: 207 EIGRAYKNLEKFL 219
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T C ECGLV+E +D EWR F + D + RVG P
Sbjct: 29 DHGCPECN--GDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAP 85
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLST I LSG + R + +RNL QA
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ + L GR+ E + + LY A RQ N PR++ E
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ + EI R ++ + L E+
Sbjct: 206 ASVSR-VDRGEIARTYRYVARELSLEV 231
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 22/211 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D GD +C ECG+VL + VD TSEWRIF+ ++ DP+R+G PL+ LL T+I+
Sbjct: 32 DMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHELLEKNP-GTLIS 90
Query: 78 KPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
K G + +L+ L K Q R + DR L Q F I +++ L IK R E +K
Sbjct: 91 KGLKG--SNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLFMGIKKRVEEFFK 148
Query: 136 KVEDQKPLRG---------RNQEAI--VAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
D LR R E + +AA ++I R E PRT KE S A G +KK +
Sbjct: 149 LYFDYLTLRTDGTRSRYSLRKNETVSSIAASIFIVSRNEKIPRTFKEI-SEATGVSKKAL 207
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLV 215
I + L + + +H +D V
Sbjct: 208 SARVRAIERSL-----RGTNISKLHNTDDFV 233
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ +C +CG+V+E+ ++D EWR F D + RVG P
Sbjct: 31 CPECG--GTVTTDDGRGERVCEQCGIVVESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
LL GLST I S LS S + +R + DRNL QA I
Sbjct: 88 LLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ EF +
Sbjct: 148 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQAGTPRSLDEFEPI 207
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
+ +++ RA ++ + LE
Sbjct: 208 SR-VRRQKYARAYRYLARQLE 227
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 6/187 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA-KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
ST I T G L K Q+R S +RNL A + ++ +L L +++
Sbjct: 72 STDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVEE 131
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 132 EAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRSY 190
Query: 189 EFIVKHL 195
FI ++L
Sbjct: 191 RFIARNL 197
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 12/193 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E VDE EWR F R G P+ ++ GL
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF-EPGQREKRARTGAPMTLMIHDKGL 74
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ +L L
Sbjct: 75 STDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLRL 134
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E SV+ +KK
Sbjct: 135 PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSK-VSKK 193
Query: 183 EIGRAKEFIVKHL 195
EIGR+ F+ + L
Sbjct: 194 EIGRSYRFMARGL 206
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-EDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L ++
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTRELNIKL 214
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASALGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + ++V D + G+ C+ CG V+ D +EWR F+ + + R G +
Sbjct: 38 CPSCGK-QKIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGDETSRS--RSGAGTSL 94
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSL-----------GKLQARSSHPDRNLIQAFKSIS 114
+ GLSTVI + + LS S+ + QA SS DRNL QA +
Sbjct: 95 AMHDMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSS-ADRNLRQALNEMD 153
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M D+L L + ++A IY+K ++K +RGR+ +VAACLY ACR PRT+ +
Sbjct: 154 KMKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAK 213
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
N +K++ R I + LE +M
Sbjct: 214 GIN-IRRKDVARCYRLIFRELELKM 237
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GDLVTDSERGETVCAECGLVVEEDEIDPGPEWRAFDAKEKDQ-KSRVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDKGLSTNIGWQNKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQAGNPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++V+ L E+
Sbjct: 202 DNVSR-VEKDEVARTYRYVVRELNLEV 227
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
AD C C + ++ D+ G+ C +CG V+ D EWR F+ E DP R G
Sbjct: 12 ADGICGRCGK-NSMLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-TDPTRTGA 69
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFK 111
P + + GL+T+I S + LS S+ R ++ DRNL QA
Sbjct: 70 PTSLTMHDRGLATIINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALS 129
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + D+L L + ++A +Y+K ++ ++GR+ A++A+ LY ACR PRT+K+
Sbjct: 130 ELATLKDKLSLSDPVIEKAAYVYRKALEKGLVKGRSISALIASALYAACRDTETPRTLKD 189
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
N +K+I R + K L+ +M
Sbjct: 190 VSDAGN-IKRKDIARCYRILHKELDLKM 216
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 8/200 (4%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C DCK+ +++ S GD IC +CGLVL VD SEWR F N+ + DP RVG
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLG 121
N L L+T+I+ ++ SL K+Q +S +N L A++ IS + +
Sbjct: 82 NSLYDTEDLTTMISY-APNSNSGSSKNSLNKIQQKSLVDKKNYALQTAYQKISELCNGYQ 140
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L + D A +YK V + + L+G+ Q++I+AA + + CR+ + PRT++E ++ N TK
Sbjct: 141 LPKSASDAAKHLYKAVREDRLLKGKTQDSIMAATILLGCRRADVPRTLEEIRALTNVPTK 200
Query: 182 ---KEIGRAKEFIVKHLEAE 198
K G K+ I HL +
Sbjct: 201 QIAKVTGLIKKIIRSHLNND 220
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 21/202 (10%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C +R E D + G+ +C ECG +++ +D+++E+R F NE+ R G PL
Sbjct: 61 CPECESQRFEE---DSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPL 116
Query: 64 NPLLSGGGLSTVIAKPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSI 113
G+ST I K GS EL +SG L K R + DRNL A +
Sbjct: 117 TYTKHDMGVSTEIGK----GSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSEL 172
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++M L L ++ + +Y+K DQ +RGR+ E+I++A LYI R++ PRT+ E
Sbjct: 173 NSMISNLNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEI- 231
Query: 174 SVANGTTKKEIGRAKEFIVKHL 195
S A+G K+EIGRA ++ + L
Sbjct: 232 SDASGIEKREIGRAYRYVAREL 253
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC T +FD+ G IC++CG V+ + +D EWR F E + R GGPLN
Sbjct: 42 YCGS----TTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGPLN 96
Query: 65 PLLSGGGLSTVI--AKPTAGGSTELLSGSLGKLQAR--------SSHPDRNLIQAFKSIS 114
L S L+T I A A G + L L+ R + +RN+IQA +S
Sbjct: 97 RLTSEA-LTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELS 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+S +LG+ D A +Y++V + +RGR+ EAIVAACL++ACR+ PR++ E
Sbjct: 156 RISSQLGIPKACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEISQ 215
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
++KE+ R I + L
Sbjct: 216 YTRA-SRKEVARCFRLIAREL 235
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D + G+T+CS+CGLV++ +D EWR F ++ D RVG P
Sbjct: 33 HCPECG--GQLNPDTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQ-KSRVGAPTT 89
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 NMMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALG 146
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++ E
Sbjct: 147 EIDRMASGLGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDE 206
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 207 IASVSR-VDKDEIARTYRYVVRELKLEI 233
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
+ D G+T+C ECG+VLE VD EWR F + RVG P +L GLS+V
Sbjct: 44 ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTEMLHDKGLSSV 102
Query: 76 IAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTT 125
I + + LS + +R S DRNL QA I M+ LG+
Sbjct: 103 IDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDRMASALGIPKD 162
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
++ A+ IY++ D++ + GR+ EA+ LY RQ PRT+ E +V+ +KE
Sbjct: 163 ARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTLDELETVSR-VDRKEFA 221
Query: 186 RAKEFIVKHLEAEM 199
RA +I + LE M
Sbjct: 222 RAYRYIARELELAM 235
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D+ G+ C +CG V+ S + EWR F +S +P R G P + L+ GLSTVI
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSG-ANPARTGAPSSLLIHDMGLSTVIN 62
Query: 78 KPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSISAMSDRLGLVTTIK 127
+ + LS S+ ++++ P DRNL QA ++ + D++ L T +
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIALSTNVL 122
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A +Y+K ++K +RGR+ A++AA +Y ACR PRT+K+ AN +K+I R
Sbjct: 123 EKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDTETPRTLKDVADAAN-VKRKDIARC 181
Query: 188 KEFIVKHLEAEM 199
+ LE +M
Sbjct: 182 YRLLHHELELKM 193
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 19 HSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAK 78
HS G+ +C +CGLVL+ ++D EWR F N++ RVG P + GL+T I
Sbjct: 38 HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTKTMHDKGLTTQIDW 96
Query: 79 PTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKD 128
LS L K Q R D RNL A + M+ LG + ++
Sbjct: 97 KNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDRMASALGAPRSTRE 156
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188
A+ +Y++ ++ +RGR+ EA+ +CLY ACR E PR++ E VA KEIGR
Sbjct: 157 VASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIPRSLDEVTEVAR-VPYKEIGRTY 215
Query: 189 EFIVKHLEAEM 199
+I + L+ EM
Sbjct: 216 RYIAQELKLEM 226
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 28 DVTCPEC--TGHLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 141
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++
Sbjct: 142 LGEIDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSL 201
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 202 DEIADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 HCPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L+ E+
Sbjct: 204 ISAVSR-VEKDEIARTYRYVVRELKLEI 230
>gi|351707652|gb|EHB10571.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 234
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 7/119 (5%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR ++ AFK + M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQ
Sbjct: 29 DRAMMNAFKETTPMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQ 88
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
E PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F N+
Sbjct: 89 EGVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 140
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHL 195
FI ++L
Sbjct: 190 YRFIARNL 197
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ IC CG V+E VD EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y +CR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHL 195
EIGR+ FI ++L
Sbjct: 185 EIGRSFRFIARNL 197
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LG+ ++ RA I ++ D+ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGMSERVRRRAIAILEEAYDRGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVDK 292
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C CG V+E +D EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHL 195
EIGR+ FI ++L
Sbjct: 185 EIGRSFRFIARNL 197
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA I ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECDS-TEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECDSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELKLEI 222
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + + +C++CGLV++A +D EWR FA++ D +P R G PL
Sbjct: 55 CPECGGRTRV----DSSERVCTDCGLVVDADRIDHGPEWRSFADD--DTNPKRTGAPLTR 108
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQ---AR-SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q AR S+ DRN + A+ I ++ LG
Sbjct: 109 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALG 168
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR RTV E C A T
Sbjct: 169 LPNSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTAAVARTVSEVCDAAKAT 226
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD + G+ IC+E G VLE VD+ EWR + E + G +N + GLS
Sbjct: 11 KIVFDANRGEYICTETGEVLEDKVVDQGPEWRAYTEEENRERSR--AGTINLAVHDMGLS 68
Query: 74 TVIAKPTAGGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
T + + + L KLQ RS + RNL++A + + D LGL +K+ A
Sbjct: 69 TYM---DTRAKDRIKAMRLRKLQIRSRVGTSEQRNLVKAMTILERIIDNLGLPKAVKEEA 125
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
IY+K ++K ++GR+ E +VAA +Y ACR+ N P T+ E S A KKEIG+A
Sbjct: 126 AIIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEI-SKATSANKKEIGKAYRL 184
Query: 191 IVKH 194
+++
Sbjct: 185 LLRE 188
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHL 195
FI ++L
Sbjct: 190 YRFIARNL 197
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELSLEI 229
>gi|157833927|pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib:
Dynamics And Interaction With Vp16 Activation Domain, 20
Structures
Length = 208
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 7/118 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
R ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQE
Sbjct: 4 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 63
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F N+
Sbjct: 64 GVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 114
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 33 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 207 ADVSR-VEKNEIARTYRYVVRELGLEV 232
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ IC CG V+E VD EWR F + S RVG P + LL GL
Sbjct: 13 TEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAF-DASQREKRARVGAPESILLHDKGL 71
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I G LSG L K Q+R S +RNL A + ++ +L L
Sbjct: 72 STDI------GIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 125
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y +CR PRT+ E ++ KK
Sbjct: 126 PRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISR-VDKK 184
Query: 183 EIGRAKEFIVKHL 195
EIGR+ FI ++L
Sbjct: 185 EIGRSFRFIARNL 197
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA I ++ ++ G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERVRRRAIAILEEAYEKGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E++ RT +E VA T R KE + K
Sbjct: 261 LEDEKRTQREVAEVARVTEVTVRNRYKELVDK 292
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D G+T+C ECGLV++ +D EWR F N S RVG P
Sbjct: 49 CPECGSET-LVSDSEHGETVCDECGLVVQENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 163
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 164 IDRMASALGLPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEI 223
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K+EI R ++V+ L+ E+
Sbjct: 224 TSVSR-VEKEEIARTYRYVVRELKLEI 249
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECN--GSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELSLEI 229
>gi|146387163|pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib
Length = 206
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 77/118 (65%), Gaps = 7/118 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
R ++ AFK I+ M+DR+ L I DR N ++K+V +QK L+GR +AI +ACLYIACRQE
Sbjct: 2 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 61
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F N+
Sbjct: 62 GVPRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 112
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLN 64
C +C+ T +V D + +C +CGLVL +D EWR F + +HD + RVG PL
Sbjct: 25 CPECETDT-IVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF--NAQEHDELSRVGAPLT 81
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLS----GSLGKLQA-----RSSHP-DRNLIQAFKSIS 114
+ GL+T I + +S G + +L+ R+ + +RNL A I
Sbjct: 82 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M LG+ T +K+ A+ IY++ +Q +RGR+ E + + LY ACR+E+ PR+++E +
Sbjct: 142 RMVSALGVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKEDIPRSLEEVTA 201
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
V+ ++EIGR +I L+
Sbjct: 202 VSR-VDQREIGRTYRYIADELD 222
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 33 CPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTTN 89
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 147 IDRMASALGLPNNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 207 ADVSR-VEKNEIARTYRYVVRELGLEV 232
>gi|125558451|gb|EAZ03987.1| hypothetical protein OsI_26125 [Oryza sativa Indica Group]
Length = 354
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 44/235 (18%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVL------EAYSVDETSEWRIFANESSDHDPVR 58
YC C+R T +V DH GD IC+EC +VL +V + A+ +D DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PLNPLLSGGGL-------STVIAKPTAGGSTELLSGSLGKLQ 96
G P G V+A GG ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTKLQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVT------K 123
Query: 97 ARSSHPDRN--LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP-LRGRNQEAIVA 153
AR PD N L + F +I M+ RLGL ++DR ++ +KVE+ K RGR+++A+ A
Sbjct: 124 ARGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALYA 183
Query: 154 ACLYIACRQENKPRTVKEFCSVA--NGTTKKEIGRAKEFIVKHL-----EAEMGQ 201
ACL+ ACR E PRT+KE + TK+++G+ I + L EAE GQ
Sbjct: 184 ACLHTACRMEGAPRTLKELIAATPDAAATKRDLGKFIHAIKRLLGSNDEEAEAGQ 238
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 97/193 (50%), Gaps = 18/193 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC ++ D GD IC ECGLVL ++++D TSEWR FA++ DP R+G P +P
Sbjct: 22 CTDCGS-ENLLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHP 80
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLGLV 123
LL T+I+K G + L+ L Q +S+ DR L Q+F I+ ++ L
Sbjct: 81 LLESNS-GTLISKGLRGANN--LNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLF 137
Query: 124 TTIKDRANEIYKKVEDQKPLRG---------RNQEAI--VAACLYIACRQENKPRTVKEF 172
IK+R E++K D LR R E + +AA ++I R E PRT +E
Sbjct: 138 KGIKERVEELFKSYFDYLTLRSDGSRTRYSLRKDETLSSIAASIFIVSRNEGIPRTFREI 197
Query: 173 CSVANGTTKKEIG 185
KKEIG
Sbjct: 198 YETTK-VPKKEIG 209
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 13/205 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V G+ +C ECGL++E ++D EWR F N S + RVG P
Sbjct: 29 CEECESGT-LVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 147 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVATV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ +KEIGR ++ + L EM
Sbjct: 207 SR-VERKEIGRTYRYVAQELGLEMA 230
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 19/200 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
A KKEIGR+ FI ++L
Sbjct: 179 AR-VDKKEIGRSYRFIARNL 197
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E SVD EWR F + + ++ RVG P
Sbjct: 31 DLVCPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 87
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TTNTMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQA 144
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++
Sbjct: 145 LGEIDRMASALGLPNNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSL 204
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K EI R ++V+ L E+
Sbjct: 205 DEIADVSR-VEKNEIARTYRYVVRELGLEV 233
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGLV+E ++D EWR F N S RVG P
Sbjct: 27 CDECSDGT-LVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLGIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L EM
Sbjct: 205 SR-VERKEIGRTYRYVAQELSLEM 227
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 98/198 (49%), Gaps = 18/198 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F D RVG P ++ GLST
Sbjct: 35 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQ-KSRVGAPTTNMMHDKGLST 93
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 94 NIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 150
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E +V+ K
Sbjct: 151 LPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIDNVSR-VEK 209
Query: 182 KEIGRAKEFIVKHLEAEM 199
E+ R ++V+ L+ E+
Sbjct: 210 DEVARTYRYVVRELKLEV 227
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 114/188 (60%), Gaps = 12/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C C+ T + ++S+GD +C CGLVL VDE SEWR FA + DP RVGGP +
Sbjct: 33 CPSCQDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGP-S 91
Query: 65 PLLSGGG----LSTVIAK--PTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSD 118
PL GG ST+I+ +G + EL +L + + + ++NL+ ++K ISA+ +
Sbjct: 92 PLAGLGGSADQFSTIISDRDGNSGLAKELQKAAL---RTQRASGEKNLVGSYKEISAVCE 148
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
++ L T + D A ++YK+ +D+K L+G++ +AI+AAC++IACRQ RT KE ++
Sbjct: 149 KINLPTMVSDIAKQLYKRQDDEKLLKGKSNDAIIAACIFIACRQAGVSRTFKEIVELSR- 207
Query: 179 TTKKEIGR 186
KK +G+
Sbjct: 208 VPKKVLGQ 215
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+I + LG+ I+ R E+ +KV + L GR+ + +C+Y+ +PR+ ++
Sbjct: 258 TIVRFCNHLGMSAYIQSRGREVVRKVMNLGVLDGRSPVTVAGSCIYLTAHLFGEPRSARD 317
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
VA G T I A I HL+ + Q+
Sbjct: 318 IGEVA-GVTDGTIRMAYRLIHPHLDEVIDQA 347
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELSLEI 229
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D + RVG P
Sbjct: 30 CPECS--GALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELSLEI 229
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E+ +D EWR F + D + RVG P
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LSG + R +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ K EI R ++V+ L E+
Sbjct: 203 SR-VEKSEIARTYRYVVRELSLEV 225
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C +CGLV+E +D EWR F + S + RVG P
Sbjct: 27 CPECG--GDLVADSERGETVCEDCGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTTN 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 84 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 140
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 141 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 200
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L E+
Sbjct: 201 SAVSR-VEKDEIARTYRYVVRELGLEI 226
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+ IC +CGLV+E ++D EWR F N + RVG P
Sbjct: 27 CPECGSDS-LVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ D +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 205 SR-VERKEIGRTYRYISQELGLEM 227
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECGSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELKLEI 222
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E+ +D EWR F + D + RVG P
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 82
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LSG + R +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 143 MASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEITEV 202
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ K EI R ++V+ L E+
Sbjct: 203 SR-VEKSEIARTYRYVVRELSLEV 225
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D+ G+ +C +CG V+E +D+ EWR F E D R G PL
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K + G + + + K R S+ +RNL A + ++
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S ++GL +++ A IY+K ++ +RGR+ E+IVAA +Y ACR+ PRT+ E
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
A+ KK+IGRA +HL E+ +++ T A+ Y+ F
Sbjct: 194 ASELNKKKIGRA----YRHLTKELNLNLKPTT--ATSYITQF 229
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Query: 19 HSAG-DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
H+ G +T+C +CGLV+ Y++D EWR FA++ D +P R G PL GLST I
Sbjct: 24 HAEGQETVCGDCGLVVSEYTIDHGPEWRSFADD--DRNPKRTGAPLTQSRHDRGLSTEIG 81
Query: 78 KPT-AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
+ T G + K R S+ +RN + AF I ++ L L I+D A +
Sbjct: 82 RSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTEIRRLTSALSLPERIRDHACSL 141
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K +++ LRGR+ E AAC+Y ACR N RTV E + A T ++
Sbjct: 142 FKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRTVGEVVAEAKATEAEQ 191
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R + PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELKLEI 222
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D+ RVG P
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDN-KSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELKLEI 229
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D+ G+ +C +CG V+E +D+ EWR F E D R G PL
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K + G + + + K R S+ +RNL A + ++
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S ++GL +++ A IY+K ++ +RGR+ E+IVAA +Y ACR+ PRT+ E
Sbjct: 135 VSSKMGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAK- 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
A+ KK+IGRA +HL E+ +++ T A+ Y+ F
Sbjct: 194 ASELNKKKIGRA----YRHLTKELNLNLKPTT--ANSYITQF 229
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 16/208 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D+ C +C+ + +G+ C CGLV E +D EWR F +E D + RVG P
Sbjct: 24 DNICPECQ--GHITRTSDSGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA-------RSSHPDRNLIQAFK 111
L+ GLST I + +SG L +L+ + +H +RNL QA
Sbjct: 81 TTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDERFRTKDAH-ERNLKQALG 139
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
IS M+ LGL ++++ A +Y++ +Q L GR+ E + A LY A RQ PR + E
Sbjct: 140 EISRMASALGLPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTE 199
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
F V+ K I RA ++ + L E+
Sbjct: 200 FADVSR-VEKIRIQRAYRYLSRELGLEI 226
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+C++CGLV+ SVD EWR F + S ++ RVG P
Sbjct: 31 CPECS--GQLVADDEHGETVCADCGLVVAEDSVDRGPEWRAF-DASEKNEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ +GL T +++ A+ IY++ ++ L GR+ E + AC+Y A RQ PR++ E
Sbjct: 145 IDRMASAVGLPTNVRETASVIYRRALEEDLLPGRSIEGVSTACVYAAARQAGVPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 205 ADVSR-VEKNEIARTYRYVVRELGLEV 230
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ D EWR F+ E DP R G P + + GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-SDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L+ S+ R + DRNL QA ++ + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PRT+K+ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEM 199
R + + LE +M
Sbjct: 179 ARCYRILHQELELKM 193
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 324
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 206 VSR-VEKAEIARTYRYVVRELKLEV 229
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 206 VSR-VEKAEIARTYRYVVRELKLEV 229
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++V D+ +G+T CS+CG VL + EWR F + +H D R G P +
Sbjct: 12 CPRCAK-GKLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQD--EHGDRARAGAPTS 68
Query: 65 PLLSGGGLSTVI--AKPTAGGS--TELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+T+I A A G T + ++ +L+ S DRN QAF ++
Sbjct: 69 LTMHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 128
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K D+ +RGR+ A++A+ LY ACR + PR +K+
Sbjct: 129 RLKDKLSISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTSTPRNLKDVEQ 188
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
AN +K+I R +VK L+ M
Sbjct: 189 AAN-IKRKDIARCYRLLVKELDLHM 212
>gi|34394691|dbj|BAC83997.1| putative Transcription initiation factor IIB [Oryza sativa Japonica
Group]
Length = 354
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 44/235 (18%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVL------EAYSVDETSEWRIFANESSDHDPVR 58
YC C+R T +V DH GD IC+EC +VL +V + A+ +D DP+
Sbjct: 10 YCQQCERTTSMVLDHDTGDAICTECAIVLGNGNDPRRPAVASAATKHGGADAPADDDPLL 69
Query: 59 VGG---------------PLNPLLSGGGL-------STVIAKPTAGGSTELLSGSLGKLQ 96
G P G V+A GG ++ +
Sbjct: 70 QGSDVVAAAAAEVACSVAPTKLQAEGAAPAAPPRMRGAVVAPKVRGGGGGAVT------K 123
Query: 97 ARSSHPDRN--LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP-LRGRNQEAIVA 153
AR PD N L + F +I M+ RLGL ++DR ++ +KVE+ K RGR+++A+ A
Sbjct: 124 ARGGVPDTNKSLAEGFDAIDNMASRLGLAGNVRDRGKDVLRKVEEAKVCARGRSRDALYA 183
Query: 154 ACLYIACRQENKPRTVKEFCSVA--NGTTKKEIGRAKEFIVKHL-----EAEMGQ 201
ACL+ ACR E PRT+KE + TK+ +G+ I + L EAE GQ
Sbjct: 184 ACLHTACRMEGAPRTLKELIAATPDAAATKRNLGKFIHAIKRLLGSNDEEAEAGQ 238
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G+T+CSECGLV+E +D EWR F + D RVG P
Sbjct: 31 CPECG--GDLVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R ++V+ L E+
Sbjct: 205 ERVSR-IDRMELTRTYRYVVRELNLEV 230
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECG--GHVINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 206 VSR-VEKAEIARTYRYVVRELKLEV 229
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 100/181 (55%), Gaps = 13/181 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD--HDPVRVGGPL 63
C +CKR +V +H G +C CGLV + +D++SEWR F++E+S+ +P RVGG L
Sbjct: 91 CDECKRAM-LVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKL 149
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRLG 121
NP LS G+ T + T G++E+ K RSS D+ + Q + I + L
Sbjct: 150 NPYLSNHGIDTQV---TGKGASEI-----QKWSDRSSLTAKDKLITQGLRMIKEQAHLLN 201
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +A+EIYK++ED+ L+G++ + VA ++ A R +P+++K S T K
Sbjct: 202 LKEAAITKASEIYKEIEDRGILKGKSVKGKVAGAIFFASRLVGQPKSLKHILSATEVTVK 261
Query: 182 K 182
+
Sbjct: 262 E 262
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D+ RVG P
Sbjct: 29 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 143 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L+ E+
Sbjct: 203 AAVSR-VEKDEIARTYRYVVRELKLEI 228
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C ECGLV+E +D EWR F + S + RVG P
Sbjct: 29 CPECG--GNLASDAEHGETVCEECGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 143 IDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L E+
Sbjct: 203 AAVSR-VGKDEIARTYRYVVRELSLEI 228
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D + G+T+C +CGLV+E +VD EWR F N S RVG P ++ GLST
Sbjct: 42 LITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTTRMMHDKGLST 100
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
I + LS + R + +RNL QA I M+ LGL
Sbjct: 101 NIGWQNKDAYGKALSARQREQMQRLRTWNERFRTRNSKERNLKQALGEIDRMASALGLPE 160
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A+ IY++ D L GR+ E + + LY A RQ PR++ E +V+ K E+
Sbjct: 161 NVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDELETVSR-VDKMEL 219
Query: 185 GRAKEFIVKHLEAEM 199
R ++V+ L+ E+
Sbjct: 220 TRTYRYVVRELKLEI 234
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 16 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 194 SR-VERKEIGRTYRYISQELGLEM 216
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 16 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 194 SR-VERKEIGRTYRYISQELGLEM 216
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+C+ECGLV+E SVD EWR F ++ D RVG P
Sbjct: 32 CPECG--GNVISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKS-RVGAPTTK 88
Query: 66 LLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSI 113
++ GLST I A G+T L S K+Q R S +RNL QA I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNT-LGSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEI 146
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ D L GR+ E + + +Y A RQ PR++ E
Sbjct: 147 DRMASALGLPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVA 206
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ + E R +IV+ L E+
Sbjct: 207 AVSR-IDEMEFKRTYRYIVRELGLEI 231
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RV 59
+ + C DC+ T VV D + +C ECGLVL +D EWR F ++ +H+ + RV
Sbjct: 16 VGEGQCPDCETET-VVHDPDRRELVCEECGLVLSDEPIDYGPEWRAF--DAREHEELSRV 72
Query: 60 GGPLNPLLSGGGLSTVI--AKPTAGGSTELLSGSLGKL------QAR---SSHPDRNLIQ 108
G PL + GL+T I A G + + +G G+L Q R + +RNL
Sbjct: 73 GAPLTQSMHDRGLTTTIDWRNRDANGHS-MDAGKHGQLHRLRVWQERIRTKNAGERNLKY 131
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M LG+ +K+ A+ IY++ D+ +RGR+ E + + LY++CR+++ PR+
Sbjct: 132 ALSEIDRMVSALGVPKPVKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKDDIPRS 191
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLE 196
++E +V+ ++EIGR +I L+
Sbjct: 192 LEEVTAVSR-VDQREIGRTYRYIADELD 218
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F ++ D RVG P
Sbjct: 30 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDS-KSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 204 AGVSR-VEKDEIARTYRYVVRELKLEI 229
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 21/204 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +CK T +V D+ + +CS+CGLV++ +D+ EWR F DHD RVG
Sbjct: 41 CPECKSHT-LVRDYERAELVCSDCGLVIDENFIDQGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL +++ A +Y+K D+ +RGR+ E + AA LY ACRQ N PRT+ E
Sbjct: 155 ELDRMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
V+ ++KEIGR F+ + L
Sbjct: 215 IAEVSR-VSRKEIGRTYRFVSREL 237
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ D+ G+ C +CG V+ D EWR F+ E DP R G P + + GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-LDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVT 124
+I S + L+ S+ R + DRNL QA ++ + D+L +
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLAVSD 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PRT+K+ N KK+I
Sbjct: 120 AVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDTETPRTLKDVSDAGN-IKKKDI 178
Query: 185 GRAKEFIVKHLEAEM 199
R + + LE +M
Sbjct: 179 ARCYRILHQELELKM 193
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECD-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 31 CPECS--GQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L+ E+
Sbjct: 205 AAVSR-VEKDEIARTYRYVVRELKLEI 230
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D G+T+CS+CGLV+EA SVD EWR F + D + RVG P + GLST
Sbjct: 37 VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTNTMHDKGLST 95
Query: 75 VIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
I K G S + L + + R S +RNL QA I M+ GL
Sbjct: 96 NIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASAQGLP 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E V+ K E
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSR-VEKAE 213
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++V+ L+ E+
Sbjct: 214 IARTYRYVVRELKLEV 229
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 19 CPECES-DALVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKNQKSRVGAPTTN 76
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 133
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + + LY A R + PR++ E
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 193
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 194 TSVSR-VEKDEIARTYRYVVRELKLEI 219
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C + +H G+T+C++CGLV+E +D EWR F + D + RVG P
Sbjct: 24 DLTCPECDGRLQADTEH--GETVCADCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TTKMMHDEGLSTNIGWQDKDAYGNS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQA 137
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + A LY A +Q PR++
Sbjct: 138 LGEIERMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAAKQARTPRSL 197
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ K EI R ++V+ L
Sbjct: 198 DEVAKVSR-VEKSEIARTYRYVVREL 222
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+++C+ECGLV+E S+D EWR F + D RVG P
Sbjct: 32 CPECS--GRVVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDSKS-RVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I MS LGL +++ A+ IY++ + L GR+ E + + LY A RQ PR++ E
Sbjct: 146 IERMSSALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQMQTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+V+ E R +IV+ L E+
Sbjct: 206 ANVSR-IDAMEFKRTYRYIVRELGLEVA 232
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 12/191 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+ CS CG V++ VD EWR +E RVG PL+P+ GLST
Sbjct: 20 LVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGSRS--RVGAPLSPMYRDHGLST 77
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
VI S LS L KL A S S RNL QA + D+L L
Sbjct: 78 VIEGVDEDASGRKLSKETREKMIRLKKLDATSQINSSETRNLQQAVNILQIYVDKLRLSQ 137
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
T+ +RA IY++ +RGR+ ++I+AA Y ACR PR ++EF +K I
Sbjct: 138 TVAERAMLIYRRALRAGLVRGRSIKSIMAAATYAACRMLGTPRDLREFERSYPAVKRKTI 197
Query: 185 GRAKEFIVKHL 195
+ ++KHL
Sbjct: 198 AQGYRLLLKHL 208
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELSLEI 222
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 36 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 93
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 150
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 151 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 210
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L E+
Sbjct: 211 TSVSR-VEKDEIARTYRYVVRELSLEI 236
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D + G+T C ECGLV+ +D EWR F N + D RVGGP L GLSTVI
Sbjct: 52 DETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGLSTVID 110
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ LS + R +RNL A + M+ LGL ++
Sbjct: 111 WQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGLPEAVR 170
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A+ +Y++ D LRGR+ E + +A LY RQ PR++ E +V+ K I RA
Sbjct: 171 ETASVVYRQALDADLLRGRSIEGVASASLYAGARQMGTPRSLSEVTTVSR-VEKLRIQRA 229
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+I + E+G VE+ H Y+ F+ ++
Sbjct: 230 YSYIAQ----ELGLGVELADPHT--YVTRFVSDL 257
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELSLEI 222
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D G+T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 136
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A R PR++ E
Sbjct: 137 IDRMASALGLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L E+
Sbjct: 197 TSVSR-VEKDEIARTYRYVVRELSLEI 222
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N RVG P
Sbjct: 16 CPECE-SDNLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 134 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 194 SR-VERKEIGRTYRYISQELGLEM 216
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ +C +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECE-SDNLVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ + + G+ +C +CGL+LE ++D EWR F N + RVG P
Sbjct: 38 ERVCPECESAS-FIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVGAP 95
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I S LS L K Q R D RNL A
Sbjct: 96 TTQTMHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFALSE 155
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ LG+ ++++ A+ IY++ +RGR+ EA+ LY ACR+E PR+++E
Sbjct: 156 TDRMASALGVPRSVREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIPRSLEEV 215
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
VA +KEIGR +I + LE M
Sbjct: 216 THVAR-VEQKEIGRTYRYIARELELGM 241
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ +V D G+ IC +CGLV+E +D EWR F N RVG P
Sbjct: 26 CPECE-SENLVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C T V A + +C++CGLV+EA +D EWR F ++ D +P R G
Sbjct: 41 ARETCPECGGRTRV----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMS 117
PL GLST I + T + + + Q S+ DRN + A+ I ++
Sbjct: 95 PLTRSRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLT 154
Query: 118 DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
L L +++D A ++ +D+ LRGR+ E AACLY+ACR + RTV E C+ A
Sbjct: 155 GALELPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACLYVACRTADVARTVGEICAEAK 214
Query: 178 GT 179
T
Sbjct: 215 AT 216
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 19/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + +V D G+T+C +CGLV+E +D EWR F N + + RVG P
Sbjct: 19 CPECESES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSTEKNQKSRVGAPTTN 76
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGE 133
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + + LY A R + PR++ E
Sbjct: 134 IDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEI 193
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ K EI R ++V+ L+ E+
Sbjct: 194 TSVSR-VEKDEIARTYRYVVRELKLEI 219
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D G+ +C + G V+E +DE EWR F E R GGPL + G +
Sbjct: 17 KLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERGRR-ARTGGPLTTTVHDMGFA 75
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L G L K QAR+ + DRNL QA + + D L L +
Sbjct: 76 TAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGDLLNLPS 135
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY++ ++ +RGR+ E+++AA +Y+ACR+ PR++ E S +K+I
Sbjct: 136 HVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACRELKVPRSLDEV-SRHTRIGRKDI 194
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYL 214
R +++ L+ +++GT DY+
Sbjct: 195 ARCYRLLLRELD------IKVGTTDPVDYV 218
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 107/208 (51%), Gaps = 21/208 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----V 57
A C +C +V D+ + +CSECGLV++A VDE EWR F DHD
Sbjct: 37 ATVQCPECGSRN-LVQDYERAELVCSECGLVVDAEFVDEGPEWRAF-----DHDQRMKRS 90
Query: 58 RVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLI 107
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 91 RVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLA 150
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
A + M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PR
Sbjct: 151 FALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPR 210
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHL 195
T+ E V+ ++KEIGR FI + L
Sbjct: 211 TLDEIGEVSR-VSRKEIGRTYRFISREL 237
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+VLE +D EWR F N S + RVG P + GL+T I K
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + ACLY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 224 SQELGLEM 231
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V+D G+ IC+ CG V++ +D EWR F + S R G P + LL GLST
Sbjct: 16 VYDPERGEVICANCGFVIQENMIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
I + G E + L K Q+R S +RNL A + + RL L +++ A
Sbjct: 75 IGYDRNVKGLMREKIY-RLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEA 133
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
+Y++ + +RG++ E+++AAC+Y ACR PRT+ E +A KKEIGR+ F
Sbjct: 134 ARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAK-VDKKEIGRSFRF 192
Query: 191 IVKHL 195
I ++L
Sbjct: 193 IARNL 197
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA E+ +K G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERTRRRAIELLEKAYGMGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKEMVEK 292
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAF-DASQRERRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L + Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++ KKEIGR+
Sbjct: 131 EEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-VDKKEIGRS 189
Query: 188 KEFIVKHL 195
FI ++L
Sbjct: 190 YRFIARNL 197
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ +A EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 8/185 (4%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V+D G+ IC+ CG V++ +D EWR F + S R G P + LL GLST
Sbjct: 16 VYDPERGEIICANCGFVIQENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
I + G E + L K Q+R S +RNL A + + RL L +++ A
Sbjct: 75 IGYDRNVKGLMREKIY-RLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHVEEEA 133
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
+Y+ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+ F
Sbjct: 134 ARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAK-VDKKEIGRSFRF 192
Query: 191 IVKHL 195
I ++L
Sbjct: 193 IARNL 197
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA E+ +V + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSERTRRRAIELLDQVYNMGLTSGKSPAGLVAAALYIAGL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E A T R KE + K
Sbjct: 261 LEGEKRTQREVAEAARVTEVTVRNRYKEMVEK 292
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D + RVG P
Sbjct: 25 CPECGGL--VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTN 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q +RNL QA I
Sbjct: 82 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEI 139
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + +C+Y A RQ PR++ E
Sbjct: 140 DRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 199
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMG 200
V+ K EI R ++V+ L E+
Sbjct: 200 DVSR-VEKAEIARTYRYVVRELGLEVA 225
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC K +++D+ G+ C+ CG V+ +D EWR F + S + R G P +
Sbjct: 12 YCGSSK----LIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAF-DVSQRNKRSRTGAPES 66
Query: 65 PLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDR 119
L+ GLST I K +G E + L K Q+R DRNL A + ++ +
Sbjct: 67 ILIHDKGLSTNIGSDKNVSGLMREKMY-RLRKWQSRLRVGDATDRNLAFALTELDRITSQ 125
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L +K+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A
Sbjct: 126 LKLPRYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-V 184
Query: 180 TKKEIGRAKEFIVKHL 195
KKEIGR+ FI ++L
Sbjct: 185 DKKEIGRSFRFIARNL 200
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL + RA EI + G++ +VAA LYIA
Sbjct: 204 PKKLFVKPTDYVTKFADELGLSEKTRRRAVEILEMAYKLGITSGKSPAGLVAAALYIASL 263
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 264 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 295
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L V+ D G+TIC +CGLVL+ VD +WR + ++ D + R+G P
Sbjct: 49 CPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTTQ 105
Query: 66 LLSGGGLSTVIA---KPTAGGS-TELLSGSLGKLQ-------ARSSHPDRNLIQAFKSIS 114
L+ GLST+I + G + +E L +L+ + +H +RNL QAF I
Sbjct: 106 LMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAH-ERNLKQAFGEIR 164
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL I++ A +Y++ + L GR+ E + A LY A RQ + PRT+ E +
Sbjct: 165 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 224
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + I RA ++ + L M
Sbjct: 225 VSR-VKRLRIQRAYRYLSRELGLRM 248
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E SVD EWR F N RVG P
Sbjct: 41 CPECD--GRLATDTEHGETVCEDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTN 97
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LSG + + R S +RNL QA I
Sbjct: 98 MMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSK-ERNLKQALGEID 156
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF +
Sbjct: 157 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQVGNPRSLDEFTA 216
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R ++++ L
Sbjct: 217 VSR-VEKMELTRTYRYVIREL 236
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +E + + + +C +CGLVL+ ++D EWR F N + RVG P+
Sbjct: 25 CPECD--SENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ ++ +RGR+ E + A LY ACRQE PR++ E V
Sbjct: 142 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADV 201
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L E+
Sbjct: 202 SR-VPQKEIGRTYRYISQELGLEL 224
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L V+ D G+TIC +CGLVL+ VD +WR + ++ D + R+G P
Sbjct: 2 CPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTTQ 58
Query: 66 LLSGGGLSTVIA---KPTAGGS-TELLSGSLGKLQ-------ARSSHPDRNLIQAFKSIS 114
L+ GLST+I + G + +E L +L+ + +H +RNL QAF I
Sbjct: 59 LMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAH-ERNLKQAFGEIR 117
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL I++ A +Y++ + L GR+ E + A LY A RQ + PRT+ E +
Sbjct: 118 RMASALGLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQHSTPRTLAELET 177
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + I RA ++ + L M
Sbjct: 178 VSR-VKRLRIQRAYRYLSRELGLRM 201
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+T+C++CGLV+ SVD EWR F N + RVG P
Sbjct: 24 CPECN--GNVITDEGHGETVCADCGLVVSEDSVDRGPEWRAF-NANEKDSKSRVGAPTTN 80
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TMHDKGLSTNIDWRNKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T +++ A+ IY++ + L GR+ E + AC+Y A R PR++ E
Sbjct: 138 IDRMASALGLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMAGVPRSLDEI 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L+ E+
Sbjct: 198 TDVSR-VDKSEVARTYRYVVRELKLEV 223
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C C + ++ D+ G+ C +CG V+ D EWR F+ E DP R G P
Sbjct: 14 TTCGRCGK-KGMMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKEGG-TDPTRTGAPT 71
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSH------PDRNLIQAFKSI 113
+ + GL+T+I S + L+ S+ +L+ S DRNL QA +
Sbjct: 72 SLTIHDRGLATIINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALSEL 131
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S + D+L L + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 132 SRLKDKLSLSDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDVS 191
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
N KK+I R + + L+ +M
Sbjct: 192 DAGN-IKKKDIARCYRLLHRELDLKM 216
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F +E R GGP+ + G +
Sbjct: 32 KIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY+ ++ +RGR+ E+I+AA +Y+ACR+ PR++ E +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTR-VNRKEI 209
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYL 214
R +++ L +++ T DY+
Sbjct: 210 ARCYRLLLREL------RIKVATTDPVDYV 233
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 12/197 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C T V++D + G+ +C CG V+E+ ++D EWR F +E D R+G PL+
Sbjct: 12 CPSCGS-TSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDER-DEGKGRMGSPLSY 69
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS------LGKLQAR-SSHPDRNLIQAFKSISAMSD 118
G STVI K A S +L + + L K Q R S+ +RNL A + S+
Sbjct: 70 AKYDKGTSTVIGK--ASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRHASN 127
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
RL + I++ A ++Y++ ++ +RGR+ E+++A LY A R+ N+P T+ E
Sbjct: 128 RLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFE- 186
Query: 179 TTKKEIGRAKEFIVKHL 195
+KE+G+A + + L
Sbjct: 187 VERKEVGKAYRLLCREL 203
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F N S RVG P ++ GLST
Sbjct: 57 LVSDSEHGETVCDECGLVVEENEIDRGPEWRAF-NSSEKDQKSRVGAPTTNMMHDKGLST 115
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 116 NIGWQNKDAYGRS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 172
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ + IY++ + L GR+ E + + LY A R + PR++ E SV+ K
Sbjct: 173 LPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLDEITSVSR-VEK 231
Query: 182 KEIGRAKEFIVKHLEAEM 199
EI R ++V+ L+ E+
Sbjct: 232 DEIARTYRYVVRELKLEI 249
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V A + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 51 CPECGGRTRV----DAAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 104
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 105 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 164
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 165 LPDSVRDTACTLFASAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEICAEAKAT 222
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 102/213 (47%), Gaps = 18/213 (8%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+++D S + +CS CG VL +D EWR F + RVG P +L GLST
Sbjct: 18 LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAFEPGQREKRS-RVGAPETVMLHDKGLST 76
Query: 75 VIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVT 124
I +SGS L Q R S DRNL A + M +LGL
Sbjct: 77 DIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELDRMGSQLGLPR 136
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
I++ A +Y+K K +RGR+ E +V+ACLY ACR N PRT+ E V+ KKEI
Sbjct: 137 NIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDVSK-VDKKEI 195
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
GR+ ++ + L ++ + DY++ F
Sbjct: 196 GRSYRYLAREL------NLRLKPTSPIDYVIRF 222
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 21/208 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----V 57
A C +C + +V D+ + +CS+CGLV++A VDE EWR F DHD
Sbjct: 37 AKVQCPECGSRS-LVQDYERAELVCSDCGLVVDAEFVDEGPEWRAF-----DHDQRMKRS 90
Query: 58 RVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLI 107
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 91 RVGAPMTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLA 150
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
A + M+ LGL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PR
Sbjct: 151 FALSELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPR 210
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHL 195
T+ E V+ ++KEIGR FI + L
Sbjct: 211 TLDEIGEVSR-VSRKEIGRTYRFISREL 237
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK +V + SAGDTIC CG VL ++D + DP R+G N
Sbjct: 38 CPDCKENPPNLVEEFSAGDTICGSCGRVLAERTID---------THQGNDDPSRIGDAAN 88
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRN--LIQAFKSISAMSDRLGL 122
PLL G L T I G LS + +S+H N L A+ I+A+ D +
Sbjct: 89 PLLHGSQLQTEIGFGDGGMRVRDLS----RAHNKSNHDKVNKALQAAYGQITALCDSQNI 144
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ A ++K +D K +G++Q+AI+A C++IACR+ ++ R+ +E + N +KK
Sbjct: 145 SRPTAETAKMLFKMTDDAKLFKGKSQDAIIAGCIFIACRKHDQQRSFREIFKMTN-VSKK 203
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIH-ASDYLVIFLLNIF 222
E+GR K LEA + +S G A + VI +N+
Sbjct: 204 EVGR----TFKVLEAFIQKSQNNGGPSIAGNGAVIDTVNLL 240
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 12/205 (5%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DCK E + D + GD IC +CGLV+ VD SEWR FA+ S DP R +N
Sbjct: 2 CPDCKNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFAD--SGDDPSRASR-VN 58
Query: 65 PLLSGGGLSTVIAK-PTAGGSTELLSGSLGKL-----QARSSHPDRNLIQAFKSISAMSD 118
L GGL+T IAK PT G GK+ + + S D+NL+ F I+ +++
Sbjct: 59 DWLPSGGLATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIAE 118
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGR-NQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
L L IK++A E+Y E ++ R +++IVAA +Y+AC++E PRT KE S
Sbjct: 119 ILVLPQKIKNKAKELYSSFESKRNKSMRCKKDSIVAAIIYMACKEEGVPRTFKEI-SKET 177
Query: 178 GTTKKEIGRAKEFIVKHLEAEMGQS 202
++KEI + + K L G++
Sbjct: 178 EISEKEIRKYYRALNKILPKGTGRT 202
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
+++ +TIC +CGLVL Y +D EWR FA+++++ P R G PL GLST I
Sbjct: 37 ENTGEETICGDCGLVLSEYRIDHGPEWRSFADDTTN--PKRTGAPLTRSRHDRGLSTEI- 93
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
G + L+G + AR S+ +RN + AF I ++ L L I+
Sbjct: 94 -----GRSIRLTGRKRRQFARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIR 148
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +++ + + LRGR+ E AAC+Y ACR RT++E +A T+ ++
Sbjct: 149 DDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQ---- 204
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
L E+G + +G I + YL F
Sbjct: 205 -RAAYTALNRELG--LPIGPIDPAQYLPRF 231
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+VLE +D EWR F N S + RVG P + GL+T I K
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + ACLY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATACLYAACRKEGIPRSLEEIAEVSR-VERKEIGRTYRYV 223
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 224 SQELGLEM 231
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
+++ +TIC +CGLVL Y +D EWR FA+++++ P R G PL GLST I
Sbjct: 37 ENTGEETICGDCGLVLSEYRIDHGPEWRSFADDTTN--PKRTGAPLTRSRHDRGLSTEI- 93
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
G + L+G + AR S+ +RN + AF I ++ L L I+
Sbjct: 94 -----GRSIRLTGRKRRQFARLRRQHNRARISTKRERNQVYAFTEIRRLTGALSLPKQIR 148
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
D A +++ + + LRGR+ E AAC+Y ACR RT++E +A T+ ++
Sbjct: 149 DDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVARTIEEITDIAKATSAEQ---- 204
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
L E+G + +G I + YL F
Sbjct: 205 -RAAYTALNRELG--LPIGPIDPAQYLPRF 231
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 11/191 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F +E R GGP+ + G +
Sbjct: 32 KIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + +SD L L +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY+ ++ +RGR+ E+I+AA +Y+ACR+ PR++ E +KEI
Sbjct: 151 YVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREMKVPRSLDEITRHTR-VNRKEI 209
Query: 185 GRAKEFIVKHL 195
R +++ L
Sbjct: 210 ARCYRLLLREL 220
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 324
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P
Sbjct: 30 CPECD--GNVINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 87 TMHDKGLSTNIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ GL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 146 RMASAQGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIAD 205
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L+ E+
Sbjct: 206 VSR-VEKAEIARTYRYVVRELKLEV 229
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 30 CPECG--GNLISDTERGETVCTECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDKGLSTNIDWRDKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRSLDEL 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K EI R ++V+ L
Sbjct: 204 TDVSR-VEKDEIARTYRYVVREL 225
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+ +C +CGLV+E +VD EWR F + S RVG P ++ GLST
Sbjct: 36 LVTDEERGERVCDDCGLVVEEDAVDRGPEWRAF-DASEREQKSRVGAPTTNMMHDKGLST 94
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I + G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 95 NIDWRDRDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASSLG 151
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L T+++ A+ IY++ D+ L GR+ E + LY A RQ PR++ E +V+ K
Sbjct: 152 LPDTVRETASVIYRRALDEDLLPGRSIEGVATGALYAAARQARTPRSLDELTAVSR-VEK 210
Query: 182 KEIGRAKEFIVKHLEAEM 199
EI R +I + L E+
Sbjct: 211 DEIARTYRYIARELGLEI 228
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+ SVD EWR F ++ D RVG P
Sbjct: 57 CPEC--AGNVVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKDQ-KSRVGAPTTN 113
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 114 TMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 170
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + +C+Y A R PR++ E
Sbjct: 171 IDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSLDEI 230
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 231 SEVSR-VEKSEVARTYRYIARELSLEV 256
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++D G+ IC +CG V++ D EWR F +E+ D R G PL+
Sbjct: 11 CPNCGS-ENIIYDPKTGEYICKDCGYVIKI-EFDLGPEWRHFDDETVDRR--RGGAPLSY 66
Query: 66 LLSGGGLSTVIAKPTAGGSTEL--LSGSLGK--LQARSSHP-------DRNLIQAFKSIS 114
G GLST I G ++E+ L G L + ++ R H DRNL A +
Sbjct: 67 AKVGRGLSTEI-----GDTSEIYKLKGELKQKFMRMRKWHSRVALSAIDRNLKIALHELK 121
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M D+L + +++ A IY+KV ++ RGRN ++A LY+ R+ N PRT++E
Sbjct: 122 KMVDKLNMPKYVEEEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIPRTLEEL-E 180
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
A G +KK+I +A IV+ L
Sbjct: 181 KATGISKKDIAKAYRLIVREL 201
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 2 CDECDGGT-LVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTTQ 59
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 60 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 119
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A +Y++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 120 MASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 179
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L EM
Sbjct: 180 SR-VERKEIGRTYRYVAQELGLEM 202
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V +D S G+ +C CG V+E ++D EWR F +E D R+G PL+ G ST
Sbjct: 20 VTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDER-DEGKGRMGSPLSYAKYDKGTST 78
Query: 75 VIAKPTAGGSTELLSGS------LGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
VI K A S +L + + L K Q R S+ +RNL A + S+RL + I+
Sbjct: 79 VIGK--ASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRRASNRLHVSNIIQ 136
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A ++Y++ ++ +RGR+ E+++A LY A R+ N+P T+ E +KE+G+A
Sbjct: 137 EEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFE-VERKEVGKA 195
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ + L +++ SDY+ F
Sbjct: 196 YRLLCREL------GIKILPTSPSDYIYKF 219
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C +V D + G+T+C +CGLV+E +VD EWR F +SS+ D RVG P
Sbjct: 45 CPECG--GSLVSDEARGETVCGDCGLVVEEDAVDHGPEWRAF--DSSERDSKSRVGAPTT 100
Query: 65 PLLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I K G S + L + + R+S +RNL QA I
Sbjct: 101 RMMHDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSK-ERNLKQALGEI 159
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ L GR+ E + A LY A RQ PR++ E
Sbjct: 160 DRMASALGLPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDELE 219
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R +IV+ L+ E+
Sbjct: 220 TVSR-VDKMELTRTYRYIVRELKLEI 244
>gi|353237099|emb|CCA69080.1| related to RRS1-regulator of ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 668
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 10/183 (5%)
Query: 31 LVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG-GGLSTVIA-KPTAGGSTELL 88
LV E+ D+ + FANE D DP RVGGP NP+ G LST I+ + G + L
Sbjct: 335 LVTESSIPDQNT----FANEEGD-DPSRVGGPQNPIYEGLDSLSTSISFRDGNSGHSREL 389
Query: 89 SGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQ 148
+ +L S R+L F+ I +M D+ L ++ D A +Y++ E++K LRG+
Sbjct: 390 QRAAARLSNDKSQ--RSLTVVFEQIQSMCDQYSLPRSVSDTAKMLYRRTEEEKLLRGKQP 447
Query: 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTI 208
+AIVAACL+IACRQ PRT KE + N KK+IG+ + + + G + +
Sbjct: 448 DAIVAACLFIACRQAAVPRTFKEIVELTN-VPKKQIGQCYKALERAFNLAPGATAANPSG 506
Query: 209 HAS 211
H+S
Sbjct: 507 HSS 509
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 8/202 (3%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGGP 62
C DC ++V D+ AGD +C CG+VL VD+T EWR F+N+ D RVG
Sbjct: 8 CVDCGS-DDIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQV 66
Query: 63 LNPLLSGGGLSTVIAKPTA-GGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLG 121
+ + L+TV+ T+ + + + L KL S+H R + I +S+ L
Sbjct: 67 EDQGIEDATLTTVLVDSTSEKNNGKAQTAMLPKLNKESAHV-RRMQNMTNRIREISETLS 125
Query: 122 LVTTIKDRANEIYKKVEDQKPL-RGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L I + A ++Y++ E + L RG +E++ AA ++IACRQ RT+KE A+G
Sbjct: 126 LPKIILEVAMQVYQEAERKGTLMRGPEKESMAAAVIFIACRQAGHARTLKEL-EGASGVM 184
Query: 181 KKEIGRAKEFIVKHLEAEMGQS 202
KK+IG++ + K L + Q+
Sbjct: 185 KKKIGKSFLILKKQLNFDFRQA 206
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Query: 9 CKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLS 68
C + ++V D +G+ +CS+CGLV + +EWRIF +ES+ RVG P +
Sbjct: 2 CGKDQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSESNGRS--RVGSPSSLAYH 59
Query: 69 GGGLSTVIAKPTAGGSTELL----SGSLGKLQA---RS---SHPDRNLIQAFKSISAMSD 118
GL+TVI K S L + S+ +L+ RS S RNL+ AF + + D
Sbjct: 60 DMGLATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKD 119
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
+LGL I ++ +Y+K ++ +RGR+ +I+AA +Y +CR+ RT+K+ A
Sbjct: 120 KLGLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGASRTLKDVAK-ATD 178
Query: 179 TTKKEIGRAKEFIVKHLE 196
+K I R+ +V L+
Sbjct: 179 IKRKAISRSYRILVLELD 196
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D RVG P
Sbjct: 23 CPECDGL--VVQDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKDQ-KSRVGAPTTN 79
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q +RNL QA I
Sbjct: 80 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEI 137
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ GL ++++ A+ IY++ ++ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 138 DRMASAQGLPDSVRETASVIYRRALEEDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 197
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMG 200
V+ K EI R ++++ L E+
Sbjct: 198 DVSR-VEKAEIARTYRYVIRELGLEVA 223
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C E +H G+T+CS CGLV+E +D EWR F + D RVG P
Sbjct: 31 CPECGGRLETDTEH--GETVCSACGLVVEENEIDRGPEWRAFDSAERDQKS-RVGAPTTT 87
Query: 66 LLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSI 113
++ GLST I A G+T L + K+Q R+S +RNL QA I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNT-LSNRQRQKMQRLRTWNERFRTRNSK-ERNLKQALGEI 145
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 146 DRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIV 205
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R ++++ L+ E+
Sbjct: 206 QVSR-IDRMELTRTYRYVIRELDLEV 230
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P + GLST
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTNTMHDKGLST 95
Query: 75 VIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
I K G S + L + + R S +RNL QA I M+ GL
Sbjct: 96 NIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASAQGLP 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E V+ K E
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSR-VEKAE 213
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++V+ L+ E+
Sbjct: 214 IARTYRYVVRELKLEV 229
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C + + D G+T+C +CGLV+E +D EWR F D RVG P
Sbjct: 29 ETLCPECG-SSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQ-KSRVGAP 86
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAF 110
++ GLST I K G S L S K+Q +RNL QA
Sbjct: 87 TTNMMHDRGLSTNIGWQNKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDAKERNLKQAL 144
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++
Sbjct: 145 GEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLD 204
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E +V+ K EI R ++V+ L E+
Sbjct: 205 ELETVSR-VDKDEISRTYRYVVRELNLEI 232
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 2 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 59
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 60 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 119
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 120 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 179
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L EM
Sbjct: 180 SR-VERKEIGRTYRYVAQELNLEM 202
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P + GLST
Sbjct: 36 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTNTMHDKGLST 94
Query: 75 VIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
I K G S + L + + R S +RNL QA I M+ GL
Sbjct: 95 NIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASAQGLP 153
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E V+ K E
Sbjct: 154 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSR-VEKAE 212
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++V+ L+ E+
Sbjct: 213 IARTYRYVVRELKLEV 228
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 32 CPECS--GTLVVDDEHGETVCEDCGLVVETDEIDRGPEWRAFDSSEKD-EKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LSG + R +RNL QA I
Sbjct: 89 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ +GL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E V
Sbjct: 149 MASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEIDEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ K EI R ++V+ L E+
Sbjct: 209 SR-VEKSEIARTYRYVVRELGLEVA 232
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P + GLST
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTNTMHDKGLST 95
Query: 75 VIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
I K G S + L + + R S +RNL QA I M+ GL
Sbjct: 96 NIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASAQGLP 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E V+ K E
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSR-VEKAE 213
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++V+ L+ E+
Sbjct: 214 IARTYRYVVRELKLEV 229
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V D G+T+C +CGLV++ +D EWR F + D RVG P
Sbjct: 38 CPECSSPT-LVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERDQ-KSRVGAPTTN 95
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 96 MMHDRGLSTNIGWQNKDAYGNS--LSSNQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 152
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ + L GR+ E I A L+ A R PR++ E
Sbjct: 153 IDRMASALGLPESVRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEV 212
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ ++E RA +IV+ L S+E+ ++YL F +I
Sbjct: 213 AHVSR-VDEEEFERAYRYIVREL------SLEIKPADPTEYLPRFASDI 254
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C + + D G+T+C +CGLV+E +D EWR F D RVG P
Sbjct: 20 ETLCPECG-SSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQ-KSRVGAP 77
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAF 110
++ GLST I K G S L S K+Q +RNL QA
Sbjct: 78 TTNMMHDRGLSTNIGWQNKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDAKERNLKQAL 135
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL +++ A+ IY++ D L GR+ E + + LY A RQ PR++
Sbjct: 136 GEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLD 195
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E +V+ K EI R ++V+ L E+
Sbjct: 196 ELETVSR-VDKDEISRTYRYVVRELNLEI 223
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK +V + S+GD +C CGLV+ VD SEWR FA + D DP RVGGP NP
Sbjct: 29 CPDCK-CARLVEEFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
LL+G I G + + +A + ++++ AF SI M D + L T
Sbjct: 87 LLNGVETFETIISFKDGNTGVARDLNRAATRAAVKNGEKSVAAAFLSIQDMCDTISLPRT 146
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+ D A ++Y++ +++K LRG+ +AI+AAC++IACRQ R+ KE ++ KK+IG
Sbjct: 147 VTDIAKQLYRRADEEKLLRGKQVDAIIAACIFIACRQSKVGRSFKEIVALTR-VPKKQIG 205
Query: 186 R 186
+
Sbjct: 206 Q 206
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +CS+CGLV++ +D+ EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCSDCGLVIDENFIDQGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL +++ A IY+K D+ +RGR+ E + AA LY ACRQ N PRT+ E V+ +
Sbjct: 164 GLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR F+ + L
Sbjct: 223 RKEIGRTYRFVSREL 237
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 14/196 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
V+ D G+++C++CGLV+EA SVD EWR F + D + RVG P + GLST
Sbjct: 37 VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTNTMHDKGLST 95
Query: 75 VIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLV 123
I K G S + L + + R S +RNL QA I M+ GL
Sbjct: 96 NIDWRDKDAYGRSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASAQGLP 154
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E V+ K E
Sbjct: 155 DNVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSR-VEKAE 213
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++V+ L+ E+
Sbjct: 214 IARTYRYVVRELKLEV 229
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++ +D G+ +CS CG V++ VDE EWR F + R G P+ ++ GLS
Sbjct: 9 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 67
Query: 74 TVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T I + T T++ + + + R + +RNL A + M+ ++ L
Sbjct: 68 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E +V+ TKKE
Sbjct: 128 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 186
Query: 184 IGRAKEFIVKHL 195
IGR+ F+ + L
Sbjct: 187 IGRSYRFLARGL 198
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++ +D G+ +CS CG V++ VDE EWR F + R G P+ ++ GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T I + T T++ + + + R + +RNL A + M+ ++ L
Sbjct: 73 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMRLP 132
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E +V+ TKKE
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 191
Query: 184 IGRAKEFIVKHL 195
IGR+ F+ + L
Sbjct: 192 IGRSYRFLARGL 203
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C+ CGLV+EA +D EWR F + D RVG P
Sbjct: 31 CPECG--GRLAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++V+ L E+
Sbjct: 205 ATVSR-VGKMELTRTYRYVVRELGLEI 230
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C+ CGLV+EA +D EWR F + D RVG P
Sbjct: 31 CPECG--GRLAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++V+ L E+
Sbjct: 205 ATVSR-VGKMELTRTYRYVVRELGLEI 230
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 47 CPECG--GRLVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRS--LSSRQREKMQRLRTWNERFRTRNSK-ERNLKQALGE 160
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL T+++ ++ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 161 IDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 220
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K EI R ++V+ L E+
Sbjct: 221 AAVSR-VEKAEIARTYRYVVRELGLEV 246
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E+V S G+ IC ECGLV+E VD EWR F N + RVG P L GL+
Sbjct: 33 EIVHRSSRGERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTTTLHDKGLT 91
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLV 123
T I +S L K Q R D RNL A I M+ LG+
Sbjct: 92 TEIDWKNKDAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDRMASALGVP 151
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A+ IY++ D+ +RGR+ E + A LY CR+E PR+++E V+ + E
Sbjct: 152 RDVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRREGIPRSLEEIADVSR-VERLE 210
Query: 184 IGRAKEFIVKHLEAEM 199
I R ++ L E+
Sbjct: 211 ISRTYRYVSNELGLEL 226
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 23/227 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C+ +E + + +C +CGLVL+ ++D EWR F N S RVG
Sbjct: 94 ATQLCPECE--SEAIV-QDGDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGA 149
Query: 62 PLNPLLSGGGLSTVI---AKPTAGGS-----TELLSGSLGKLQARSSHPD---RNLIQAF 110
P + GL+T I K G S E +S L Q R D RNL A
Sbjct: 150 PTTQTMHDKGLTTQIDWKNKDAYGNSLSSRKREQMS-RLRTWQERVRTKDAGERNLQFAL 208
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
+ M+ LG+ + ++ A+ IY++ ++ +RGR+ E + CLY ACRQE PR++
Sbjct: 209 SEMDRMASALGVPKSTREVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLD 268
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E V+ +EIGR ++ K L S+EM + +Y+ F
Sbjct: 269 EVADVSR-VPYQEIGRTYRYVAKEL------SLEMRPVDPKEYVPRF 308
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V+D + G+ +C + G V+E +DE EWR F E R GGP+ + G +
Sbjct: 28 KIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERGRR-ARTGGPVTAAVHDMGFA 86
Query: 74 TVIAKPTAGGSTELLSGS------LGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVT 124
T I + L+ L K QAR+ + +RNL QA + ++D L L +
Sbjct: 87 TSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPS 146
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+K+ A IY++ D+ +RGR+ E+++AA +Y+ACR+ PR++ E +KEI
Sbjct: 147 YVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREMKVPRSLDEITRHTR-IGRKEI 205
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYL 214
R +++ L +++ T +DY+
Sbjct: 206 ARCYRLLLREL------RIKVSTTDPADYV 229
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+D C +C +++ D G+T+C CGLV+E +D EWR F + D RVG
Sbjct: 24 SDVQCPECD--GKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAFDAKEKDQ-KSRVGA 80
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQ 108
P ++ GLST I K G S L S K+Q R S +RNL Q
Sbjct: 81 PTTNMMHDKGLSTNIDWRDKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQ 137
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR+
Sbjct: 138 ALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQAGVPRS 197
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ K EI R ++V+ L
Sbjct: 198 LDELTDVSR-VEKDEIARTYRYVVREL 223
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C +CGLVL+ +D EWR F N S RVG P+ + GL+T I
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 85 TELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
LS L K Q R D RNL A I M+ LG+ ++++ A+ IY
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 119
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ ++ +RGR+ E + + LY ACRQE PR++ E V+ +KEIGR +I +
Sbjct: 120 RRALNEDLIRGRSIEGVATSALYAACRQEGIPRSLDEVAEVSR-VPQKEIGRTYRYISQE 178
Query: 195 LEAEM 199
L E+
Sbjct: 179 LGLEL 183
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 15/202 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DCK T + D+ + +C++CGLVLE VD EWR F + ++ R G P++
Sbjct: 16 CPDCKG-THLKRDYDHAEIVCADCGLVLEDNIVDTGPEWRAF-DMQQENALARAGPPMST 73
Query: 66 LLSGGGLSTVIAKPT--------AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSIS 114
L GLST I+ PT + + + K Q R S +RN+ A + +
Sbjct: 74 TLPDKGLSTEIS-PTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQ 132
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
A++ L L I++ A IY++ ++ L GR E + A LY ACRQE PRT+ E S
Sbjct: 133 AVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTLTEI-S 191
Query: 175 VANGTTKKEIGRAKEFIVKHLE 196
+ ++KEI R + +VK L+
Sbjct: 192 RHSRYSRKEISRTYQVMVKALK 213
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 27 CDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I +S L K Q R D RNL A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E +V
Sbjct: 145 MASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L EM
Sbjct: 205 SR-VERKEIGRTYRYVAQELNLEM 227
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I +S L K Q R D RNL A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ +KEIGR +I + L EM
Sbjct: 202 AAVSR-VERKEIGRTYRYIAQELGLEM 227
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 3 DSYCADCKRL--TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP---- 56
D Y +C +V D+ + +CSECGLV++ +D+ EWR F DHD
Sbjct: 35 DKYTVECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAF-----DHDQRMKR 89
Query: 57 VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNL 106
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 90 SRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNL 149
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
A + M+ LGL +++ A IY++ ++ +RGR+ E + AA LY ACRQ N P
Sbjct: 150 AFALSELDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVP 209
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
RT+ E V+ ++KEIGR F+ + L
Sbjct: 210 RTLDEIAEVSR-VSRKEIGRTYRFVSREL 237
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 14/195 (7%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D + + CS CG+V+E + D E R FAN ++D G + GLST
Sbjct: 26 LVTDVESSEIFCSNCGIVVEEKTNDRRPE-RAFANSTTDKS--HTGDKTSLTRHDRGLST 82
Query: 75 VIA---KPTAGGS-TELLSGSLGKLQA---RS---SHPDRNLIQAFKSISAMSDRLGLVT 124
VI K +AG + + S+ +L+ RS ++ DRNL QA +S M ++L L
Sbjct: 83 VINPFDKDSAGSPLSASMKSSMTRLRKWDNRSRIKTNDDRNLQQALLELSKMKEKLSLSD 142
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
I ++A+ IY+K ++K ++GR+ ++VAACLY ACR+ PRT++E + + G +KEI
Sbjct: 143 AIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRESEAPRTLREV-AASIGIKRKEI 201
Query: 185 GRAKEFIVKHLEAEM 199
I K L+ +M
Sbjct: 202 SATYRLIFKELDLKM 216
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 213 VSR-VEKSEVARTYRYIARELSLEV 236
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ +C +CG+V+E S+D+ EWR F + D R G P++
Sbjct: 9 CPECGS-GHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAF-DSDQDEKRARTGSPMSF 66
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ + + + K R S+ +RNL A + ++
Sbjct: 67 LSHDKGLATEISWSNRDYYGKRIPHKNRAQIYRVRKWHQRIRVSNASERNLSLALQLLND 126
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACRQ N PRT+ E
Sbjct: 127 DGSKLGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKA 186
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
A+ KK+IG+A + K L+ +
Sbjct: 187 AD-INKKKIGKAYRHLAKELKLNL 209
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V A + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 57 CPECGGRTRV----DAAERVCDDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ +G
Sbjct: 111 SRHDRGLSTDIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMG 170
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ + + LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 171 LPDSVRDAACALFDSAQSESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 228
>gi|448626518|ref|ZP_21671297.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445760130|gb|EMA11394.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 339
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSSRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
V+ + E RA ++ + L S+++G + YL F+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFV 242
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 19/217 (8%)
Query: 5 YCADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-----DPVR 58
YC + + +VFD S+GD +C ECGL++E + E EWR F+ E++ D R
Sbjct: 110 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 169
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARSSHPDRNL 106
VG L+ L GG+ T + ++GG +L + L DR L
Sbjct: 170 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGTGVGSGDRQL 229
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENK 165
AF I + + L + +RA EI K + +D LR R+ + A +Y+ACR+
Sbjct: 230 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGAQLRTRSNATTMLAIIYLACREAGV 289
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
RTVKE ++KE+G+A I K L G S
Sbjct: 290 TRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVS 326
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +CS+CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 110
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 111 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 170
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 171 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 229
Query: 184 IGRAKEFIVKHL 195
IGR FI + L
Sbjct: 230 IGRTYRFISREL 241
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I +S L K Q R D RNL A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ +KEIGR +I + L EM
Sbjct: 202 AAVSR-VERKEIGRTYRYIAQELGLEM 227
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL 226
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D G+T+C ECGLV+E +D EWR F D RVG P ++ GLST
Sbjct: 40 LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTTNMMHDKGLST 98
Query: 75 VIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLG 121
I K G S L S K+Q R S +RNL QA I M+ LG
Sbjct: 99 NIGWQDKDAYGNS--LSSRQREKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALG 155
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V+ +
Sbjct: 156 LPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDEIERVSR-IGR 214
Query: 182 KEIGRAKEFIVKHLEAEM 199
E+ R ++V+ L E+
Sbjct: 215 MELTRTYRYVVRELNLEV 232
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVG 60
A C C + ++V D+ +G+ C++CG V+ + EWR FA++ +H D R G
Sbjct: 7 ARDACQRCGK-GKLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHD--EHGDRARTG 63
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAF 110
P + + GL+T+I S L+ S+ +++ P DRN QAF
Sbjct: 64 APTSLTMHDMGLATIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAF 123
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
++ + D+L + + ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K
Sbjct: 124 SELNRLKDKLAISDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTATPRNLK 183
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ AN +K+I R +VK L+ M
Sbjct: 184 DVEEAAN-IKRKDIARCYRLLVKELDLRM 211
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 13/208 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
+ C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG
Sbjct: 23 GERACDECGGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGA 80
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFK 111
P + GL+T I LS L K Q R D RNL A
Sbjct: 81 PTTQTMHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALS 140
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
M+ LG+ ++++ A +Y++ D+ +RGR+ E + + LY ACR E PR+++E
Sbjct: 141 ETDRMASSLGIPRSVREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEE 200
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KEIGR ++ + L EM
Sbjct: 201 VSGVSR-VERKEIGRTYRYVAQELGLEM 227
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 10/182 (5%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C T V + + +C++CGLV+EA +D EWR F ++ D +P R G
Sbjct: 47 ARETCPECGGRTRV----DSAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGA 100
Query: 62 PLNPLLSGGGLSTVIAKPT-AGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMS 117
PL GLST I + T G + R S+ DRN + A+ I ++
Sbjct: 101 PLTRSRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLT 160
Query: 118 DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN 177
L L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV+E C A
Sbjct: 161 GVLELPDSVRDTACTLFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVEEICGEAK 220
Query: 178 GT 179
T
Sbjct: 221 AT 222
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGL 72
++V D+ +G+ CS+CG V+ + EWR F + +H D R G P + + GL
Sbjct: 19 KLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQD--EHGDRARAGAPTSLTMHDMGL 76
Query: 73 STVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSISAMSDRLGL 122
+T+I + + LS S+ +++ P DRN QAF ++ + D+L +
Sbjct: 77 ATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELNRLKDKLAI 136
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+ AN +K
Sbjct: 137 SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQAAN-IKRK 195
Query: 183 EIGRAKEFIVKHLEAEM 199
+I R ++K L+ +M
Sbjct: 196 DIARCYRLLIKELDLKM 212
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+TIC +CGLV+ SVD EWR F + D RVG P
Sbjct: 71 CPECS--GNVVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKS-RVGAPTTN 127
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 128 TMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 184
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M+ LGL +++ A+ IY++ D+ L GR+ E + +C+Y A R PR++ E
Sbjct: 185 VDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRSLDEI 244
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 245 AEVSR-VPKSEVARTYRYIARELSLEV 270
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ IC +CGLV+E ++D EWR F N RVG P
Sbjct: 29 CPECA-SDNLVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQ 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + A LY ACR+E PR+++E V
Sbjct: 147 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIPRSLEEISEV 206
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 207 SR-VERKEIGRTYRYISQELGLEM 229
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGL 72
++V D+ +G+ CS+CG V+ + EWR F + +H D R G P + + GL
Sbjct: 16 KLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQD--EHGDRARAGAPTSLTMHDMGL 73
Query: 73 STVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISAMSDRLGL 122
+T+I S L+ S+ +L+ S DRN QAF ++ + D+L +
Sbjct: 74 ATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRLKDKLAI 133
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ ++A IY+K D+ +RGR+ A++A+ LY ACR PR +K+ AN +K
Sbjct: 134 SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTETPRNLKDVEQAAN-IKRK 192
Query: 183 EIGRAKEFIVKHLEAEM 199
+I R +VK L+ +M
Sbjct: 193 DIARCYRLLVKELDLKM 209
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 16/210 (7%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
+ C C + ++V D + G+ CS CG V + EWR F+N+ D RVG
Sbjct: 13 LGKQRCPACTK-AKMVLDETTGELFCSVCGFVETEKITEGGPEWRSFSNDGGDRS--RVG 69
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL-----------QARSSHPDRNLIQA 109
+ + GLST+I + + L S+ K QA SS +RNL QA
Sbjct: 70 AGTSITMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSS-ERNLRQA 128
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ + D+L L T+ ++A IY+K ++K ++GR+ +VAAC+Y +CR PRT+
Sbjct: 129 LSEMDKLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTL 188
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ N +K++ R+ I + L+ ++
Sbjct: 189 DDIAEGIN-IKRKDVARSYRIIFRELDLKI 217
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I +S L K Q R D RNL A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ +KEIGR ++ + L EM
Sbjct: 202 AAVSR-VERKEIGRTYRYVAQELNLEM 227
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 20/208 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V+ D G+++C +CGLV+E +D EWR F N + + RVG P
Sbjct: 32 CPECG--GQVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ + PR++ E
Sbjct: 146 IERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+V+ + E R +IV+ L E+
Sbjct: 206 ANVSR-IDEMEFKRTYRYIVRELSLEVA 232
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C E +H G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 28 TTCPECDARLEADSEH--GETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQ-KSRVGAPT 84
Query: 64 NPLLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I + +L + K+Q R S +RNL QA
Sbjct: 85 TNMMHDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D L GR+ E + A LY A RQ PR++ E
Sbjct: 144 IERMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +I++ L E+
Sbjct: 204 ERVSR-VDRMELTRTYRYIIRELNLEV 229
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C T +V G+ +C +CGL++E ++D EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I +S L K Q R D RNL A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ L + ++++ A IY++ D+ +RGR+ E + + LY ACR E PR+++E
Sbjct: 142 TDRMASSLAIPRSVREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLEEV 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ +KEIGR ++ + L EM
Sbjct: 202 AAVSR-VERKEIGRTYRYVAQELNLEM 227
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++ D G+TIC +CGLV+E +VD EWR F + ++ RVG P
Sbjct: 25 CPECS--GKLIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTN 81
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNS--LGSRQREKMQRLRKWNERFRTRDSK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + +C+Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L E+
Sbjct: 199 TEVSR-VDKSEVARTYRYVVRELSLEV 224
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C +CGLV+E VD EWR F N S RVG P + GL+T I
Sbjct: 44 VCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKNQDAY 102
Query: 85 TELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
LS L K Q R D RNL A I M+ LG+ ++++ A+ IY
Sbjct: 103 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIY 162
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ + +RGR+ E + + LY ACRQE PR+++E V+ +KEIGR +I +
Sbjct: 163 RRALAEDLIRGRSIEGVATSTLYAACRQEGIPRSLEEVAEVSR-VDQKEIGRTYRYISQE 221
Query: 195 LEAEM 199
L EM
Sbjct: 222 LGLEM 226
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 57 CPECGGRTRV----DGAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ +G
Sbjct: 111 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMG 170
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 171 LPDSVRDAACALFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 228
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C VV D G+T+C++CGLV+ SVD EWR F D RVG P
Sbjct: 23 DLTCPECG--GNVVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKDQ-KSRVGAP 79
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
+ GLST I + G S L S K+Q R S +RNL QA
Sbjct: 80 TTNTMHDKGLSTNIDWRDRDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQA 136
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D L GR+ E + +C+Y A R PR++
Sbjct: 137 LGEIDRMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMAGVPRSL 196
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ K E+ R +I + L E+
Sbjct: 197 DEISEVSR-VEKSEVARTYRYIARELSLEV 225
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++ +D G+ +CS CG V++ +DE EWR F + R G P+ ++ GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAF-DPDQRTKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI---------AKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T I + T T++ + + + R + +RNL A + M+ ++ L
Sbjct: 73 TDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMAAQMMLP 132
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E +V+ TKKE
Sbjct: 133 RRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSK-VTKKE 191
Query: 184 IGRAKEFIVKHL 195
IGR+ F+ + L
Sbjct: 192 IGRSYRFLARGL 203
>gi|402594223|gb|EJW88149.1| transcription initiation factor IIB [Wuchereria bancrofti]
Length = 210
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 7/119 (5%)
Query: 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQ 162
DR + Q I MS R+ L +I+D A +I+K V D K LRG+N EA AACLYIACR+
Sbjct: 5 DRQMSQGLSVIREMSARIHLPKSIEDGAAKIFKDVLDSKALRGKNNEAQAAACLYIACRK 64
Query: 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
E PRT KE C+ A+ +KKEIGR + I+K LE + Q I ++D++ F N+
Sbjct: 65 EGVPRTFKEICA-ASRVSKKEIGRCFKLIIKSLETSLEQ------ITSADFMSRFCGNL 116
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A++ C +C V D ++G+ C CGLV+E +D EWR F + + RVG
Sbjct: 24 AEASCPECD--GRVTRDEASGEATCDACGLVVETDEIDRGPEWRDFGGDGREQ-KSRVGA 80
Query: 62 PLNPLLSGGGLSTVIA--KPTAGGS---------TELLSGSLGKLQARSSHPDRNLIQAF 110
P+ L+ GLST I A GS E L + + + + +RNL QAF
Sbjct: 81 PMTELMHDKGLSTNIGWQNEDAYGSPLSDRQRTRMERLRTWDERFRTKDAQ-ERNLKQAF 139
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ L L ++++ A +Y++ ++ L GR+ E + A LY A RQ PR V
Sbjct: 140 GEIDRMASALALPDSVRETAGVLYRRAVEEGLLPGRSIEGMATASLYAATRQHGAPRRVT 199
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
EF V ++K I RA ++L+ E+G ++E
Sbjct: 200 EFADVCR-VSQKRIERA----YRYLKTELGLAIE 228
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
V+ + E RA ++ + L S+++G + YL F+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFI 242
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ IC +CGLV+E ++D EWR F N + RVG P
Sbjct: 27 CPECD-SENLVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR ++ + L EM
Sbjct: 205 SR-VNRKEIGRTYRYVSQELALEM 227
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E VD EWR F + S + RVG P
Sbjct: 29 HCPECG--GRLITDEEHAETVCTDCGLVVEEDEVDRGPEWRAF-DASEKDEKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSIS 114
++ GLST I LS + R +RNL QA I
Sbjct: 86 NMMHDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R +I++ L
Sbjct: 206 VSR-VEKMELTRTYRYIIREL 225
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC +C ++ D +T+C++CGLV+E +D EWR F D RVG P
Sbjct: 27 YCPECG--GRLISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSIS 114
++ GLST I LS + R +RNL QA I
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 144 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 203
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R +I++ L
Sbjct: 204 VSR-VEKMELTRTYRYIIREL 223
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKLEI 236
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + +T C +CG VLE+ +D EWR F + +D RVG P
Sbjct: 35 CPECS--GRIVHDEAQAETHCQDCGRVLESDQIDRGPEWRAF-DSREKNDKSRVGAPQTQ 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR-----------SSHPDRNLIQAFKSIS 114
L GLSTVI LS SL + + R ++ +RNL QA I+
Sbjct: 92 QLHDRGLSTVIDWRDEDAYGRSLS-SLQRKKMRRLRKWDERFRTKNNRERNLKQALGEIN 150
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LG I++ + +Y++ ++ LRGR+ E + A LY R EN PRT+ + +
Sbjct: 151 RMASALGCPDPIRETTSVLYRQALEKDMLRGRSVEGMATAALYAGSRLENAPRTLDDVAA 210
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++ LE EM
Sbjct: 211 VSR-VDKIEIERTYRYLADELELEM 234
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C + VV G+ IC ECGLV+E VD EWR F N + RVG P
Sbjct: 24 STCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPT 81
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q+R D RNL A I
Sbjct: 82 TQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALSEI 141
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ ++++ + IY++ + +RGR+ E + A LY CRQE+ PR+++E
Sbjct: 142 DRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIPRSLEEIT 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +I L E+
Sbjct: 202 EVSR-IERIEVSRTYRYISNELGLEL 226
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV+E +D EWR F N S + RVG P
Sbjct: 31 CPECG--GRLVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I + LS + R +RNL QA I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V
Sbjct: 148 MASALGLPKSVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEITAV 207
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ K EI R ++++ L E+
Sbjct: 208 SR-VEKDEIARTYRYVIRELGLEV 230
>gi|55378764|ref|YP_136614.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637593|ref|ZP_21675831.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651893|ref|ZP_21680906.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55231489|gb|AAV46908.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764440|gb|EMA15595.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445769296|gb|EMA20370.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 339
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 24/228 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ + E RA ++ + L S+++G + YL F+ +
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFVSKL 245
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
EVV D+ + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 45 EVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 103
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI + LS + L K Q R S +RNL A + ++ +LGL
Sbjct: 104 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 163
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A IY+ D+ +RGR+ E +VAA +Y ACR+ PRT+ E A+ +KE
Sbjct: 164 RHVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 222
Query: 184 IGRAKEFIVKHLEAEM 199
IGR F+ + L ++
Sbjct: 223 IGRTYRFLARELNIKL 238
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 18/211 (8%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRV 59
+ C C + ++V D + G+ CS CG V EA + E EWR F+N+ D RV
Sbjct: 13 LGKQRCPSCTK-AKMVLDENTGELFCSFCGFV-EAEKITEGGPEWRSFSNDGGDRS--RV 68
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL-----------QARSSHPDRNLIQ 108
G + + GLST+I + + L S+ K QA SS +RNL Q
Sbjct: 69 GAGTSITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSS-AERNLRQ 127
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + + D+L L + ++A IY+K ++K ++GR+ +VAAC+Y ACR PRT
Sbjct: 128 ALSEMDKLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRT 187
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ + N +K++ R+ I + L+ ++
Sbjct: 188 LDDIAEGIN-IKRKDVARSYRIIFRELDLKI 217
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAVRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
V+ + E RA ++ + L S+++G + YL F+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFV 242
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKLEI 236
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C++CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 61 CPECGGRTRV----DGAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 114
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 115 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGALE 174
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +D+ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 175 LPDSVRDAACALFDSAQDESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 232
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQANLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
V+ + E RA ++ + L S+++G + YL F+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFI 242
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 24/225 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C DC +V D S G+T+C CGLV++ +D EWR F ++ D+ RVG P
Sbjct: 30 CPDCG--GSLVTDDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L + K+Q H +RNL QA I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNS--LSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEI 144
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M LG+ + ++ A+ IY++ D+ L GR+ E + A LY A RQ N P+T+ +
Sbjct: 145 DRMGSALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMA 204
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218
V+ + E RA ++ + L S+++G + YL F+
Sbjct: 205 VVSR-VDEMEFTRAYRYLNREL------SLQVGPPDPATYLSKFI 242
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C ++ D G+T+C +CGLV+E +D EWR F + D + RVG P
Sbjct: 22 SGCPECG--GKLAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPT 78
Query: 64 NPLLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I + L S K+Q R S +RNL QA
Sbjct: 79 TNMMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 137
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++ E
Sbjct: 138 IDRMASALGLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEV 197
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 198 AGVSR-VEKSEIARTYRYVVRELGLEV 223
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D S G+ IC CG V++ +D+++E+R F N R G PL G+ST I
Sbjct: 74 DSSKGELICISCGTVIDEDRIDKSAEYRAF-NAEEKEKKARAGQPLTYTKHDMGVSTEIG 132
Query: 78 KPTAGGSTEL--LSGS-------LGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
K GS EL +SG+ L K R + DRNL A +++M L L ++
Sbjct: 133 K----GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISNLNLPESVH 188
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ +Y+K DQ +RGR+ E+I++A +YI R++ PRT+ E S A+G K+EIGRA
Sbjct: 189 EETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEI-SDASGIEKREIGRA 247
Query: 188 KEFIVKHL 195
++ + L
Sbjct: 248 YRYVAREL 255
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ G+T+C ECGLV+E VD EWR F D RVG P
Sbjct: 37 CPECG--GNLVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 213 VSR-VEKMELTRTYRYIVRELKLEI 236
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D +T+C++CGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GQLVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERDQKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +IV+ L E+
Sbjct: 202 SQVSR-VDRMELTRTYRYIVRELSLEV 227
>gi|324511266|gb|ADY44696.1| Transcription initiation factor IIB [Ascaris suum]
Length = 211
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 7/122 (5%)
Query: 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159
++ DR + QA I MS R+ L +I+D A ++++ V D K L+G+N EA AACLYIA
Sbjct: 2 NNTDRQMSQAMSVIREMSARIHLSKSIEDNAAKVFRDVLDSKALKGKNNEAQAAACLYIA 61
Query: 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLL 219
CR+E PRT KE C+ A+ +KKEIGR + I+K LE + Q I ++D++ F
Sbjct: 62 CRKEGVPRTFKEICA-ASRVSKKEIGRCFKLIIKSLETNLEQ------ITSADFMSRFCG 114
Query: 220 NI 221
N+
Sbjct: 115 NL 116
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D +T+C++CGLV+E +D EWR F + D RVG P
Sbjct: 28 CPECG--GQLVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 142 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +IV+ L E+
Sbjct: 202 SQVSR-VDRMELTRTYRYIVRELSLEV 227
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 142
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 143 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 202
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 203 ISAVSR-VEKMELTRTYRYIIREL 225
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++C LV+E +D EWR F D + RVG P
Sbjct: 46 HCPECG--GRLVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 102
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 103 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQREKMQRLRTWNERFRTRNSK-ERNLKQALG 159
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL T+++ ++ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 160 EIDRMASALGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 219
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K EI R ++V+ L
Sbjct: 220 ISAVSR-VEKAEIARTYRYVVREL 242
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 17/209 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGG 61
+C +C +VV D SAGD +C CG++L +D++ EWR FAN+ DP RVG
Sbjct: 9 HCRECGS-ADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGD 67
Query: 62 PLNPLLSGGGLST--VIAKPTAGGSTELLSGSLGKLQAR-----SSHPDRNLIQAFKSIS 114
+ L+ LST V K + GG+ G G R S R + + I
Sbjct: 68 VADARLNSLSLSTYLVDTKKSGGGA----DGEPGHKHKRPNISSDSAKVRRMQRNMARIQ 123
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++D L L I + A ++Y + E Q +RG +E++ A L+IACR+ R++KEF
Sbjct: 124 EVADYLSLPKNIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF- 182
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
A+G K+ IG++ + + L+ E+ Q+
Sbjct: 183 EEASGVPKRRIGKSFMSLQRRLDLEVKQA 211
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDAEFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHL 195
IGR FI + L
Sbjct: 226 IGRTYRFISREL 237
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 18/221 (8%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V DHS G+ C +CG+V+E +D EWR + +E R G P
Sbjct: 50 DGTCPECGS-PRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSERG-MQRARAGPP 107
Query: 63 LNPLLSGGGLSTVIA--KPTAGG----STELLSGSLGKLQAR---SSHPDRNLIQAFKSI 113
+ L G +T I + + G T + L K Q++ +S +RNL+++ +
Sbjct: 108 VVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLMEL 167
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++ LGL +I +RA IY++V RGR ++IVAA +Y ACR+ PRT+ E
Sbjct: 168 ERITSSLGLPKSITERAALIYRRVVSNNLTRGRCIDSIVAAAVYAACREAGLPRTLDEVA 227
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL 214
+ ++ K+ +GRA F+ + L ++ I ++DY+
Sbjct: 228 AHSS-VDKRSVGRAYRFLARTL------GLKPAPITSTDYV 261
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 142
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 143 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDE 202
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 203 ISAVSR-VEKMELTRTYRYIIREL 225
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ +C +CGLV+E ++D EWR F N + RVG P
Sbjct: 31 CPECD-SENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 209 SR-VNRKEIGRTYRYISQELGLEM 231
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C + VV G+ IC ECGLV+E VD EWR F N + RVG P
Sbjct: 24 STCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGAPT 81
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q+R D RNL A I
Sbjct: 82 TQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALSEI 141
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ ++++ + IY++ + +RGR+ E + A LY CRQE PR+++E
Sbjct: 142 DRMASALGVPRSVREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEIT 201
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +I L E+
Sbjct: 202 EVSR-IERIEVSRTYRYISNELGLEL 226
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V G+ +C +CGLV+E ++D EWR F N + RVG P
Sbjct: 31 CPECD-SENLVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 149 MASALGVPRSVREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 208
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 209 SR-VNRKEIGRTYRYISQELGLEM 231
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC ECGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYVVRELKLEI 236
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +++ D G+T+C++CGLV+ SVD EWR F + D RVG P
Sbjct: 25 CPECS--GQLISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKDQKS-RVGAPTTN 81
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGE 138
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A +Y A RQ PR++ E
Sbjct: 139 IDRMASALGLPDNVRETASVIYRRALNEDLLPGRSIEGVATASVYAAARQAGVPRSLDEI 198
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L E+
Sbjct: 199 SEVSR-VEKSEVARTYRYVVRELGLEV 224
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ K E+ R +IV+ L S+E+ YL F+ ++
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDL 244
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C +V D+ G+T+C ECGLV+E VD EWR F D RVG P
Sbjct: 33 EQVCPECG--GNLVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 89
Query: 63 LNPLLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFK 111
++ GLST I P + L + + R S +RNL QA
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALG 148
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 149 EIDRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDE 208
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 209 LEKVSR-VEKMELTRTYRYIVRELKLEI 235
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 216 VSR-VEKSEVARTYRYIARELSLEV 239
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+ +C +CGLV+E +VD EWR F + D RVG P
Sbjct: 29 CPECD--GRLLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKS-RVGAPTTK 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LS + + R S +RNL QA I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSK-ERNLKQALGEID 144
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ PR++ E S
Sbjct: 145 RMASALGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIAS 204
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L+ E+
Sbjct: 205 VSR-VDKMELTRTYRYVVRELKLEI 228
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G P+
Sbjct: 11 CPECNS-EHLIRDYEHGELICADCGAVIEDAYIDQGPEWRAF-DSDQDERRARTGSPMTY 68
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K G + + + K R S+ +RNL A + ++
Sbjct: 69 LSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLND 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ +LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E S
Sbjct: 129 IGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEI-SK 187
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
A+ KK+IG+A + K L+
Sbjct: 188 ASEVNKKKIGKAYRHLAKELD 208
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDAEFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHL 195
IGR FI + L
Sbjct: 226 IGRTYRFISREL 237
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C ++ D G+T+C ECGLV+E VD EWR F ++S+ D RVG P
Sbjct: 36 CPECS--GNLIHDDDHGETVCQECGLVVEDTIVDRGPEWRAF--DASERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I P + L + + R S +RNL QA I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEI 150
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 151 DRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELE 210
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 211 KVSR-VDKMELTRTYRYIVRELKLEI 235
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 106/239 (44%), Gaps = 48/239 (20%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF----ANESSD----- 53
D C +C +V D G+T+C +CGLV+E SVD EWR F NE S
Sbjct: 28 DLACPEC--AGNLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAFDAAEKNEKSRVGAPT 85
Query: 54 ----HD----------------PVRVGGPLNPLLSGGGLSTVI---AKPTAGGSTELLSG 90
HD RVG P + GLST I K G S L S
Sbjct: 86 TNTMHDXRGPEWRAFDAAEKNEKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGNS--LGSR 143
Query: 91 SLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ 140
K+Q R S +RNL QA I M+ LGL T +++ A+ IY++ D+
Sbjct: 144 QREKMQRLRKWNERFRTRDSK-ERNLKQALGEIDRMASALGLPTNVRETASVIYRRALDE 202
Query: 141 KPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
L GR+ E + AC+Y A RQ PR++ E V+ K EI R ++V+ L E+
Sbjct: 203 DLLPGRSIEGVSTACVYAAARQAGVPRSLDEIADVSR-VEKNEIARTYRYVVRELGLEV 260
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C +V D G+T+C ECGLV+E VD EWR F ++S+ D RVG P
Sbjct: 36 CPECG--GNLVQDDEHGETVCQECGLVVEDTVVDRGPEWRAF--DASERDSKSRVGAPTT 91
Query: 65 PLLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSI 113
++ GLST I P + L + + R S +RNL QA I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEI 150
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A R + PR++ E
Sbjct: 151 DRMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELE 210
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 211 KVSR-VDKMELTRTYRYIVRELKLEI 235
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 14/193 (7%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP-VRVGGPLNPLLSGGGLSTVI 76
D + +T+C++CGLV+E ++D EWR F +SS+ D RVG P ++ GLST I
Sbjct: 33 DEAQAETVCNDCGLVVEEDAIDRGPEWRAF--DSSEKDKKSRVGAPTTKMMHDDGLSTNI 90
Query: 77 AKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTI 126
LS S + R H +RNL QA I M+ LGL +
Sbjct: 91 GWQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLPENV 150
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
++ A+ IY++ + L GR+ E I A L+ A R N PR++ E +V+ + R
Sbjct: 151 RETASVIYRRALAEDLLPGRSIEGIATASLHAAARMGNVPRSLDEMAAVSR-VDQATFKR 209
Query: 187 AKEFIVKHLEAEM 199
A +IV+ L E+
Sbjct: 210 AYRYIVRELSLEV 222
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 35 CPECN--GRLVADDEHAETVCADCGLVVEEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGKS--LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQALGE 148
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + + L GR+ E + + LY A RQ PR++ E
Sbjct: 149 IDRMASALGLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEI 208
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R ++V+ L
Sbjct: 209 SAVSR-VDKAEVARTYRYVVREL 230
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C+ECGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLVSDDEHAETVCTECGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS + R +RNL QA I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ K E+ R +I++ L
Sbjct: 207 SR-VEKMELTRTYRYIIREL 225
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 32 CPECG--GRLAADTEHGETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G + L S K+Q R S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNA--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ D+ L GR+ E + + LY A RQ PR++ E
Sbjct: 146 IDRMASALGLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDEI 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++V+ L E+
Sbjct: 206 ATVSR-VGKMELTRTYRYVVRELGLEI 231
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 216 VSR-VEKSEVARTYRYIARELSLEV 239
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 216 VSR-VEKSEVARTYRYIARELSLEV 239
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGGGLS 73
D+ + +C++CGLV++A VDE EWR F DHD RVG P+ + GLS
Sbjct: 52 DYERAELVCADCGLVVDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDKGLS 106
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I + +S L K Q R S+ +RNL A + M+ LGL
Sbjct: 107 TMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLP 166
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++KE
Sbjct: 167 RTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRKE 225
Query: 184 IGRAKEFIVKHL 195
IGR FI + L
Sbjct: 226 IGRTYRFISREL 237
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V + C +CGLVLE +D EWR F N+S RVG P
Sbjct: 27 CPECES-TALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I + L EM
Sbjct: 205 SR-VDRMEIGRTYRYISQELGLEM 227
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 216 VSR-VEKSEVARTYRYIARELSLEV 239
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C++CGLV+ A SVD EWR F D + RVG P
Sbjct: 40 CPECG--GHVVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 155
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 156 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 215
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 216 VSR-VEKSEVARTYRYIARELSLEV 239
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ K E+ R +IV+ L S+E+ YL F+ ++
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDL 244
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 36 CPECS--GNLVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTN 92
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
L+ GLST I K G S + L + + R S +RNL QA I
Sbjct: 93 LMHDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 151
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ PR++ E
Sbjct: 152 RMASALGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIER 211
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L+ E+
Sbjct: 212 VSR-VEKMELTRTYRYVVRELKLEI 235
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 26 CPECG--GRLAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 82
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSIS 114
++ GLST I + L S K+Q R S +RNL QA I
Sbjct: 83 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + A +Y A RQ PR++ E
Sbjct: 142 RMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQAGVPRSLDEVAG 201
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 202 VSR-VEKSEIARTYRYVVRELGLEV 225
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
E+V D S + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 33 EIVSDSS--EIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKR-CRVGAPMTYTIHDKGLS 89
Query: 74 TVI---------AKPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLG 121
TVI +A EL L K Q R S +RNL A + ++ +LG
Sbjct: 90 TVIDWRNKDAYGKDISANKRAELYR--LRKWQRRIRVSDASERNLAFALSELDRIASKLG 147
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +K+ A+ +Y++ + +RGR+ E +VAA +Y ACR+ PRT+ E V+ K
Sbjct: 148 LPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVSR-VDK 206
Query: 182 KEIGRAKEFIVKHLEAEMG 200
KEIGR F+ + L+ ++
Sbjct: 207 KEIGRTYRFLARELKIKLA 225
>gi|395324790|gb|EJF57224.1| hypothetical protein DICSQDRAFT_92561 [Dichomitus squalens LYAD-421
SS1]
Length = 359
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 16/210 (7%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD---HDPVRVGG 61
C DC+ +V + GD +C CGLVL +D SEWR F + SD H RVG
Sbjct: 31 CRDCQEYPPNIVEEFRDGDLVCGSCGLVLSDRIIDTRSEWREFTSTHSDETTHAHCRVGQ 90
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL--QARSSHP-DRNLIQAFKSISAMSD 118
+ L G GL +A + S +S L ++ QA + P +R + QAF+ I M
Sbjct: 91 VQDRL--GVGLEH-LATTISVDSGSSISQDLRRVARQAENLSPSERRVRQAFRDIDDMCA 147
Query: 119 RLGLVTTIKDRANEIYKKV--EDQKP--LRGRNQ-EAIVAACLYIACRQENKPRTVKEFC 173
R+ L T+ D ++Y ++ E+ +P LR R Q EA + AC +IACRQ PRT E C
Sbjct: 148 RIQLPNTVLDITKQLYWRIDQENIRPSRLRSRAQYEATLGACFFIACRQARVPRTFIEIC 207
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQSV 203
V + K++IGRA + + G +V
Sbjct: 208 QVTS-VDKQDIGRAYRELEQKFNLRSGSTV 236
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++ D G+ C +CG V+ S + EWR F + +H + R G P +
Sbjct: 11 CPRCAK-NSLLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQD--EHGNKARAGAPTS 67
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GLST+I S + L+ S+ +L+ S DRNL QA ++
Sbjct: 68 LTMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELN 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ A++A+ LY ACR PRT+ +
Sbjct: 128 RLKDKLSLSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGE 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
AN KK+I R + + LE +M
Sbjct: 188 AAN-LKKKDIARCYRLLHRELELKM 211
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 22/208 (10%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVG 60
AD C +C +V D +T+CS+CGLV+EA +D EWR F ++S+ D RVG
Sbjct: 47 ADHRCPECG--GSLVTDSEHAETVCSQCGLVVEADGIDHGPEWRAF--DASERDSKSRVG 102
Query: 61 GPLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLI 107
P ++ GLS+ I K G S L S K+Q R S +RNL
Sbjct: 103 MPTTKMMHDKGLSSNIGWQDKDAYGRS--LSSRQRQKMQRLRTWDERFRTRDS-KERNLK 159
Query: 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR 167
QA I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR
Sbjct: 160 QALGEIDRMASALGLPKNVRETASVIYRRALNEDLLPGRSIEGVATASLYAAARQSGVPR 219
Query: 168 TVKEFCSVANGTTKKEIGRAKEFIVKHL 195
T+ E +V+ E R +IV+ L
Sbjct: 220 TMDEVTTVSR-IDGMEFKRTYRYIVREL 246
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ +V D G+T+C++CGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S DRNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-DRNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ+ PR++ EF
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQDGNPRSLDEFT 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++++ L+ E+
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELKLEI 238
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+ A SVD EWR F D + RVG P
Sbjct: 39 CPECG--GHVVTDDEHGETVCDDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 95
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
+ GLST I + G S + L + + R S +RNL QA I
Sbjct: 96 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSK-ERNLKQALGEID 154
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ D L GR+ E + +C Y A R PR++ E
Sbjct: 155 RMASALGLPENVRETASVIYRRALDDDLLPGRSIEGVATSCTYAAARMAGVPRSLDEIAE 214
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +I + L E+
Sbjct: 215 VSR-VEKSEVARTYRYIARELSLEV 238
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 12/195 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D+ + C++CGLV+ VD EWR F +E + RVG P+
Sbjct: 34 CPECGS-KNLVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKR-ARVGAPMTY 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH----PDRNLIQAFKSISAMSDRLG 121
+ GLST++ + G L K + + +H +R+ I A I M+ L
Sbjct: 92 RIHDKGLSTLVTWSSPGQGQYKL-----KKRQQWTHIANTTERSFIFALSEIDRMASALR 146
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I++ A+ +Y+K + +RGR+ E I +A LY++CRQ PRT++E V+ +
Sbjct: 147 LPINIREAASMLYRKAMKKHLIRGRSIEGITSAILYVSCRQYGVPRTLEEVRDVSR-VGQ 205
Query: 182 KEIGRAKEFIVKHLE 196
KEI RA F+++ L+
Sbjct: 206 KEISRAYRFLLRELD 220
>gi|1943468|pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
Length = 204
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ AFK I+ M+DR+ L DR N ++++ +QK L+GR +AI +ACLYIACRQE
Sbjct: 2 MMNAFKEITTMADRINLPRNKVDRTNNLFRQAYEQKSLKGRANDAIASACLYIACRQEGV 61
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
PRT KE C+V+ +KKEIGR + I+K LE SV++ I D++ F N+
Sbjct: 62 PRTFKEICAVSR-ISKKEIGRCFKLILKALET----SVDL--ITTGDFMSRFCSNL 110
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ +C +CGLV+E ++D EWR F N + RVG P + GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 204 SQELALEM 211
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V + +C++CGLV+E +D EWR F N + RVG P + GL+T
Sbjct: 37 LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQTMHDKGLTT 95
Query: 75 VIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVT 124
I K G S S L K Q R D RNL A I M+ LG+
Sbjct: 96 TIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPR 155
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEI
Sbjct: 156 SVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEI 214
Query: 185 GRAKEFIVKHLEAEM 199
GR +I + L EM
Sbjct: 215 GRTYRYISQELGLEM 229
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + +++ D++ G+ CS CG V+ ++ EWR F+N+ +D RVG +
Sbjct: 11 CPSCTK-AKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSNDGTDRS--RVGAGTSI 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKL-----------QARSSHPDRNLIQAFKSIS 114
+ GLST+I + + + L S+ K QA SS +RNL QA +
Sbjct: 68 TIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSS-AERNLRQALSEMD 126
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M +L L + ++A IY+K ++K ++GR+ +VAAC+Y +CR RT+ +
Sbjct: 127 KMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNTETSRTLDD--- 183
Query: 175 VANGTT--KKEIGRAKEFIVKHLEAEM 199
+ANG +K++ R I + L+ ++
Sbjct: 184 IANGINIRRKDVARCYRLIFRELDLKI 210
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ +C +CGLV+E ++D EWR F N + RVG P + GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 144
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR ++
Sbjct: 145 VIYRRSLADDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYV 203
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 204 SQELALEM 211
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG---GGL 72
+ D G +C+ CG VL + +D EWR F E + D R GGPL + S +
Sbjct: 54 IEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELVTRI 112
Query: 73 STVIAKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
T + P E+L + + R + +RNL+QA ++ ++ +LG+ + D A
Sbjct: 113 ETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMDEAL 172
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+YK+V ++GR+ EAI+AACL++ACR + PR++ E +KEI R I
Sbjct: 173 AVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRA-PRKEIARCFRLI 231
Query: 192 VKHL 195
+ L
Sbjct: 232 AREL 235
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 23/208 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C +CK + + +T+C CGLVL +D SEWR F+N+ ++ DP RVG N
Sbjct: 25 CPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETSN 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVT 124
LL+G L T IA G + +L KL S ++ L+ A+K I A+ D +
Sbjct: 85 ILLNGNQLETSIAGGATGAARQLYRAQ-NKLS--SEKNNKALMAAYKEIGALCDGFNIQK 141
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ D A ++K V+D K +G++Q+A PRT E +V ++KEI
Sbjct: 142 IVADTAKYLFKIVDDHKAFKGKSQDA---------------PRTFSEIFAVTK-VSRKEI 185
Query: 185 GRAKEFIVKHLEAEMGQSVEMGTIHASD 212
GR + + K A Q++E I SD
Sbjct: 186 GRIYKSLEKFFTA---QNIERTAIVGSD 210
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ T +V + C +CGL+LE +D EWR F N+S RVG P
Sbjct: 27 CPECES-TALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I + L EM
Sbjct: 205 SR-VDRMEIGRTYRYISQELGLEM 227
>gi|428169704|gb|EKX38635.1| hypothetical protein GUITHDRAFT_115183 [Guillardia theta CCMP2712]
Length = 449
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 104/208 (50%), Gaps = 24/208 (11%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
CA C + L E+ G +CS C + A + SEWR F ++ + R GGP
Sbjct: 131 CAYCGSESLIEI---QEEGSIVCSNCAMENNARIMSTQSEWRTFQDDDKSQEKGRTGGPE 187
Query: 64 NPLLSGGGLSTVIA-------KPTAGGSTELL--SGSLGKLQAR--SSHPDRNLIQAFKS 112
N LL+ G T I KP + ++L + +L K Q R S DR L A+K
Sbjct: 188 NALLNNDGAQTKIEGNDFLTRKPV---TVDVLGSAANLAKSQHRFGSQSGDRALTDAYKK 244
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRN--QEAIVAACLYIACRQENKPRTVK 170
I + D + L + I+ +A +K +++ + + + ++ +C+YIACR+E PRT+K
Sbjct: 245 IDEICDTMNLSSVIRGQAKHNFKSYDEESKKQKKKIPIDPVLTSCIYIACREEGFPRTMK 304
Query: 171 EFCSVANGTTKKEIGRA--KEFIVKHLE 196
E C+ A TKKEIG A E I K ++
Sbjct: 305 EMCA-ATTLTKKEIGNAFKHELIKKTVQ 331
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+++++D+ G+ C+ CG ++ VD EWR F + S R G P + LL GL
Sbjct: 16 SKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAF-DASQREKRSRTGAPESILLHDKGL 74
Query: 73 STVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I GS ++G L K Q+R S +RNL A + ++ +L L
Sbjct: 75 STDI------GSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKL 128
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KK
Sbjct: 129 PRHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIAR-VDKK 187
Query: 183 EIGRAKEFIVKHL 195
EI R+ FI ++L
Sbjct: 188 EIARSFRFIARNL 200
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA E+ ++ ++ G++ +VAA LYIA
Sbjct: 204 PKKLFVKPTDYVNKFADELGLSEKVRRRAIELLEEAYNRGLTSGKSPAGLVAAALYIASL 263
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 264 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 295
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ K E+ R +IV+ L S+E+ YL F+ ++
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDL 244
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +C ++V D+ + +C +CGLV++A +D EWR F DHD R
Sbjct: 38 ESQCPECGS-RQLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAF-----DHDQRMKRSR 91
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 92 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 151
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 152 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 211
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 212 LDEIAEVSR-VSRKEIGRTYRFISREL 237
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
E+VFD G+ +C+ CGLV E +D EWR F N R G P+ L G+
Sbjct: 21 AEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLRLPDKGI 79
Query: 73 STVIAKP--TAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST+I + +GG + AR S +RN QAF + ++ +L L +++
Sbjct: 80 STIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPESVR 139
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A IY+K + +RGR E+++ A ++ AC++ PRT +E + + EI RA
Sbjct: 140 ELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRA 199
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ + L +++ SD+L F
Sbjct: 200 YRVLQRRL------NLKQKPTEPSDHLPRF 223
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 117 SDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+ +LG+ ++ +A EI +K +++ G+ + AA LYIA E + RT KE VA
Sbjct: 224 ASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVA 283
Query: 177 NGT 179
T
Sbjct: 284 RVT 286
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 13/208 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C C + T +V D + G+ C +CG V+ + EWR F+ E + R G
Sbjct: 7 AKEKCPRCGKAT-LVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRS-RAGV 64
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFK 111
P + + GL+T+I + + LS S+ +L+ S DRN QAF
Sbjct: 65 PTSLAMHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 124
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ + D+L + T+ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 125 ELDRLKDKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKD 184
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ +N +K+I R +++ L +M
Sbjct: 185 IANASN-IKRKDIARCYRLLLRELGLKM 211
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C ECGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL 229
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C ECGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQ-KSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL 229
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL 226
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL 226
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V + +C +CGLV+E +D EWR F N + RVG P
Sbjct: 26 CPECS-SDNLVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V
Sbjct: 144 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEV 203
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ +KEIGR +I + L EM
Sbjct: 204 SR-VERKEIGRTYRYISQELGLEM 226
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 20/223 (8%)
Query: 5 YCADCKRLTE-VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-----DPVR 58
YC + + +VFD S+GD +C ECGL++E + E EWR F+ E++ D R
Sbjct: 113 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 172
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARSSHPDRNL 106
VG L+ L GG+ T + ++GG +L + L + DR L
Sbjct: 173 VGDALDAWLEDGGIGTTMLVASSGGPLAGKAAWSAKRLQQLHEAATSGLGSGVGSGDRQL 232
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKV-EDQKPLRGRNQEAIVAACLYIACRQENK 165
AF I + + L + +RA EI K + +D LR R+ + A Y+ACR+
Sbjct: 233 KVAFNYIRLIGEAFALRDNVLERAKEITKDLMQDGVQLRTRSNTTTMLAITYLACREAGV 292
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG-QSVEMGT 207
RTVKE ++KE+G+A I K L G S E T
Sbjct: 293 TRTVKELVVYDRAISEKELGKAINRIKKLLPQRGGVNSAESAT 335
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
+ +C +CGLV+E +D EWR F N RVG P + GL+T I K
Sbjct: 8 AELVCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 66
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 67 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 126
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 127 VIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 185
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 186 SQELGLEM 193
>gi|449680698|ref|XP_002156994.2| PREDICTED: transcription initiation factor IIB-like, partial [Hydra
magnipapillata]
Length = 220
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 7/118 (5%)
Query: 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE 163
+ + +A + R G V T +DR+N+++K+V DQK L+GR+ +AI +ACLYIACRQE
Sbjct: 16 KQVTEASSRVYTHEKREGFVRTQEDRSNQLFKQVHDQKSLKGRSNDAIASACLYIACRQE 75
Query: 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
PRT KE C+++ KKEIGR + I+K LEA SV++ I + D++ F N+
Sbjct: 76 GVPRTFKEICAISK-IPKKEIGRCFKLILKALEA----SVDI--ITSEDFMSRFCSNL 126
>gi|448513858|ref|ZP_21616789.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448526632|ref|ZP_21619901.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445693011|gb|ELZ45174.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445698859|gb|ELZ50897.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 337
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 69 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 126
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 127 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 186
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 187 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 229
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 28 CPECG--GRVVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS + R +RNL QA I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ K E+ R +I++ L
Sbjct: 205 SR-VEKMELTRTYRYIIREL 223
>gi|448482845|ref|ZP_21605616.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821131|gb|EMA70927.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 331
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 63 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 120
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 121 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 180
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 181 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 223
>gi|448427470|ref|ZP_21583785.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445678157|gb|ELZ30651.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 343
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 235
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 28 CPECG--GRVISDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS + R +RNL QA I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ K E+ R +I++ L
Sbjct: 205 SR-VEKMELTRTYRYIIREL 223
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C ++ D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 30 HCPECG--GRLISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 86
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 143
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 EIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDE 203
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 204 ISAVSR-VEKMELTRTYRYIIREL 226
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
EVV D+ + +C++CG V++ D EWR F +E RVG P+ + GLS
Sbjct: 42 EVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 100
Query: 74 TVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI + LS + L K Q R S +RNL A + ++ +LGL
Sbjct: 101 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 160
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+++ A IY+ ++ +RGR+ E +VAA +Y ACR+ PRT+ E A+ +KE
Sbjct: 161 RHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAE-ASRVDRKE 219
Query: 184 IGRAKEFIVKHL 195
IGR F+ + L
Sbjct: 220 IGRTYRFLAREL 231
>gi|345005621|ref|YP_004808474.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321247|gb|AEN06101.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C +V+ D G+T C ECGLVL+ S+D EWR F E D + RVG P
Sbjct: 26 SSCPECD--GQVIRDDEHGETTCEECGLVLDDVSIDRGPEWRTFDGEEKD-EKSRVGAPT 82
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSG-SLGKLQ----------ARSSHPDRNLIQAFKS 112
L+ GLST I + +S +LQ + +H +RNL QAF
Sbjct: 83 TQLMHDKGLSTTIGWQNKDAYGQAVSNRKRARLQRLRTWDERFRTKDAH-ERNLKQAFGE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
IS M+ L + ++ A +Y++ D+ L GR+ E + A LY A RQ PR + EF
Sbjct: 142 ISRMASALDMPEPARETAGVLYRRAVDEDLLPGRSIEGMATAALYAAARQHGTPRPLSEF 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K I RA ++ + L
Sbjct: 202 AEVSR-VEKIRIQRAYRYLSREL 223
>gi|119719600|ref|YP_920095.1| transcription initiation factor IIB [Thermofilum pendens Hrk 5]
gi|119524720|gb|ABL78092.1| Transcription initiation factor IIB (TFIIB) [Thermofilum pendens
Hrk 5]
Length = 327
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 20/202 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +++D + G+ IC+ CG V+ +D+ +EWR F E + RVG P+
Sbjct: 29 CPNCGS-TRLIYDATRGEIICANCGYVMSEREIDQGAEWRAFTPEEREKRS-RVGAPI-- 84
Query: 66 LLSGGGLSTVIAKPTAGGS------------TELLSGSLGKLQARS-SHPDRNLIQAFKS 112
S G+ +++ GG E+L +++AR+ S +RNL QA
Sbjct: 85 --SRYGVESLVTDIDWGGRDAAGREISLRKRIEMLRLRKWQVRARAQSSMERNLAQAVIE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ + +LGL + DRA +IYK D +RGR+ E+++AA +Y ACR+ PRT+ E
Sbjct: 143 LERLGAQLGLPKAVLDRALDIYKSALDSNLVRGRSIESVMAAAVYAACREMRLPRTLDEI 202
Query: 173 CSVANGTTKKEIGRAKEFIVKH 194
++ +K++ R +++
Sbjct: 203 -ALYTRAGRKDVARCYRLLLRE 223
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C++C ++VV S G+ IC CGLV+E +D EWR F N + RVG P
Sbjct: 34 STCSECGS-SDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAF-NHQERQNKSRVGAPT 91
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSI 113
+ GL+T I K G S S L K Q R D RNL A I
Sbjct: 92 TQTIHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEI 151
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LG+ +++ + IY++ + +RGR+ E + A LY CRQE PR+++E
Sbjct: 152 ERMASALGVPKAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLEEVT 211
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + EI R +I L E+
Sbjct: 212 EVSR-IERIEISRTYRYISNELGLEL 236
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R ++V+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYVVRELKLEI 236
>gi|448451292|ref|ZP_21592775.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445810726|gb|EMA60742.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 343
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
Query: 21 AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80
A + +C++CGLV+EA +D EWR F ++ D +P R G PL GLST I + T
Sbjct: 75 AAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTRSRHDRGLSTEIGRST 132
Query: 81 AGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKK 136
+ + + Q S+ DRN + A+ I ++ L L +++D A ++
Sbjct: 133 KVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLELPDSVRDAACALFDS 192
Query: 137 VEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
+++ LRGR+ E AAC+Y+ACR + RTV E C+ A T
Sbjct: 193 AQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCAEAKAT 235
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGS 84
+C +CGLVL+ ++D EWR F N + RVG P + GL+T I
Sbjct: 44 LCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQTMHDKGLTTQIDWKNKDAY 102
Query: 85 TELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
LS K +R +RNL A + M+ LG+ + ++ A+ IY
Sbjct: 103 GNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDRMASALGVPRSTREVASVIY 162
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ ++ +RGR+ E + CLY ACRQE PR++ E V+ +EIGR ++ K
Sbjct: 163 RRALNEDLIRGRSIEGVATGCLYAACRQEGIPRSLDEVADVSR-VPYQEIGRTYRYVAKE 221
Query: 195 LEAEM 199
L EM
Sbjct: 222 LSLEM 226
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 26/229 (11%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C VV D G+T+C +CGLV+E +D EWR F + D RVG P
Sbjct: 29 CPECS--GNVVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAFNSAEKDRKS-RVGAPTTN 85
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRS--LSSEQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ L GR+ E + + LY A R PR++ E
Sbjct: 143 IDRMASALGLPQNVRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMAGNPRSLDEM 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ K E+ R +IV+ L S+E+ YL F+ ++
Sbjct: 203 ARVSR-VEKMELTRTYRYIVREL------SLEVQPADPEHYLPRFISDL 244
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 98/200 (49%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T + +D+ + +C +CG ++E +D EWR F + R G P+
Sbjct: 177 CPECGS-TNLRWDYEKAELVCLDCGAIIEESLIDFGPEWRAF-DSYQKAKRQRTGSPIKY 234
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS-------GSLGKLQARSS---HPDRNLIQAFKSISA 115
GL T I K LS G L K RSS +RNL A +
Sbjct: 235 TKPNKGLVTEIDKYNRDIRGSKLSPQAASQMGRLRKWHKRSSIASSIERNLTIAMGDLER 294
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S LGL + I++ A +Y+K ++ +RGR E++VAA +Y+ CRQ PRT+ E V
Sbjct: 295 ISSYLGLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIPRTLDEISEV 354
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ G TKKEIGR F+ K L
Sbjct: 355 S-GITKKEIGRTYRFLKKEL 373
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +CK ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ESVCPECKS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL 234
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+ C+ECGLVL+A +D EWR +E +D + RVG PL
Sbjct: 37 CPECS--GRIVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPLTE 93
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSIS 114
GLST I + EL + +L+ A+++ +RNL AF +
Sbjct: 94 RRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQ-ERNLKHAFGELE 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ L L ++ A +Y++ D++ L GR+ EA+ ACLY A RQ PRT F S
Sbjct: 153 RMASALDLPEPCRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTWATFES 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
V ++ EIGR + ++L E+G +E+ YL F
Sbjct: 213 V----SRVEIGRVQR-AYRYLSRELG--LEIAPADPLQYLGQF 248
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 18/202 (8%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGL+LE S+D EWR F N + RVG P + GL+T I
Sbjct: 46 CEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNQDAYG 104
Query: 86 ELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS L K Q R D RNL A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYR 164
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ D+ +RGR+ E + + LY ACR E PR++ E +V+ + EIGR +I K L
Sbjct: 165 RTLDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAVSR-VDRMEIGRTYRYISKEL 223
Query: 196 EAEMGQSVEMGTIHASDYLVIF 217
S+EM + Y+ F
Sbjct: 224 ------SLEMQPVDPKKYVPRF 239
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 35 CPECG--GRLVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 148
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 149 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEI 208
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K EI R ++V+ L
Sbjct: 209 SAVSR-VEKDEIARTYRYVVREL 230
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSIS 114
++ GLST I + LS + R +RNL QA I
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 146 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISA 205
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R ++++ L
Sbjct: 206 VSR-VDKMELTRTYRYVIREL 225
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++V D G++ C ECGLV++ VD EW+ + N + RVG P
Sbjct: 26 CPECD--GKIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQ 82
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSIS 114
L+ GLST I K T G + +LQ + +H +RNL QA I
Sbjct: 83 LMHDKGLSTTIGWKNTDGYGKTIPDRKRARLQRLRTWDERFRTKDAH-ERNLKQALTEIR 141
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL ++ A +Y++ L GR+ E + ACLY A RQ PRT+ F
Sbjct: 142 RMASALGLPEPPRETAGILYRRAVKDNLLPGRSIEGMATACLYAATRQHGSPRTLTTFAD 201
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ + I RA ++ + L
Sbjct: 202 VSR-VKRLRIQRAYNYLSREL 221
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F + S + RVG P
Sbjct: 31 CPECG--GRLVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAF-DASEKDEKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPKNVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K EI R ++++ L
Sbjct: 205 AAVSR-VEKDEIARTYRYVIREL 226
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C +V D +T+C++CGLV+ +D EWR F D + RVG P
Sbjct: 33 AHCPECN--GRLVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPT 89
Query: 64 NPLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
+ GLST I A G T L S K+Q R+S +RNL QA
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQT-LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQALG 147
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ E
Sbjct: 148 EIDRMASALGLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQAGTPRSLDE 207
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R ++V+ L
Sbjct: 208 ISAVSR-VDKAEVARTYRYVVREL 230
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G
Sbjct: 13 APKRCPECHS-EHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAF-DSDQDERRARTGS 70
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFK 111
P+ L GL+T I+ K G + + + K R S+ +RNL A +
Sbjct: 71 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 130
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + +LG+ IK+ + IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E
Sbjct: 131 LLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 190
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLE 196
A+ KK+IG+A + K L+
Sbjct: 191 IAK-ASEVNKKKIGKAYRHLAKELD 214
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLN 64
C C + ++ D G+ C +CG V+ S + EWR F + +H + R G P +
Sbjct: 11 CPRCAK-NALLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQD--EHGNKARAGAPTS 67
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSIS 114
+ GLST+I S + L+ S+ +L+ S DRNL QA ++
Sbjct: 68 LTMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELN 127
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L L + ++A IY+K ++K +RGR+ A++A+ LY ACR PRT+ +
Sbjct: 128 RLKDKLALSDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDTETPRTLNDVGE 187
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
AN KK+I R + + L+ +M
Sbjct: 188 AAN-LKKKDIARCYRLLHRELDLKM 211
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 25/230 (10%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C+ TE++ D G+T+C++CGLV++ S+D EWR F + D RVG P
Sbjct: 64 HCPECE-STELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTT 121
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
L+ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 122 KLMHDKGLSTNIGWQDKDAYGNS--LSSTQRQKMQRLRTWNERFRTRDSK-ERNLKQALG 178
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL ++++ A+ IY++ D+ L GR+ E I A L+ A R PR++ E
Sbjct: 179 EIDRMASALGLPESVRETASVIYRRALDEDLLPGRSIEGISTAALHAAARMAQVPRSIDE 238
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ + E RA +IV+ L S+E+ ++Y+ F ++
Sbjct: 239 VARVSR-VDEDEFERAYRYIVREL------SLEIQPADPAEYVPRFASDL 281
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T +V + C +CGL+LE +D EWR F N+S RVG P
Sbjct: 27 CPECDS-TALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I + L EM
Sbjct: 205 SR-VDRMEIGRTYRYISQELGLEM 227
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I + LS + R +RNL QA I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +V
Sbjct: 147 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ K E+ R +I++ L
Sbjct: 207 SR-VDKMELTRTYRYIIREL 225
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C C R ++ D + G+ CS+CG V E EWR F+ + D+ R G P
Sbjct: 9 SRCQRCNR-GAILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNR-TRTGTPT 66
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSI 113
+ + GL+T+I + + LS S+ +++ P DRN QAF +
Sbjct: 67 SLAIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 126
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +L L T+ ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ +
Sbjct: 127 DRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+ N +K+I R +++ L+ +M
Sbjct: 187 NSIN-IKRKDIARCYRLLLRELDLKM 211
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDS-KSRVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKLEI 236
>gi|448532924|ref|ZP_21621344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445706158|gb|ELZ58043.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 339
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 60 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 113
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 114 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 173
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C A T
Sbjct: 174 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKAT 231
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 34 CPECG--GRLIADDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL 229
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C +V D +T+C++CGLV+ +D EWR F D + RVG P
Sbjct: 33 AHCPECN--GRLVADDEHAETVCADCGLVVAESEIDRGPEWRAFDAAERD-EKSRVGAPT 89
Query: 64 NPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAF 110
+ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQS--LSSRQREKMQRLRTWNERFRTRNSR-ERNLKQAL 146
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++
Sbjct: 147 GEIDRMASALGLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQAGTPRSLD 206
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHL 195
E +V+ K E+ R ++V+ L
Sbjct: 207 EISAVSR-VDKAEVARTYRYVVREL 230
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V D G+ C+ECGLVL+A ++D EWR +++ + RVG P++
Sbjct: 30 CPECD--GSVHRDEEHGERTCTECGLVLDADAIDYGPEWRTLDDDADER--RRVGAPVSK 85
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQARSSH------PDRNLIQAFKSISA 115
L GLST I +SG L +L+ + +RNL QAF I
Sbjct: 86 LRHDKGLSTTIGWRDEDAYGNRISGRKREQLQRLRTWNERFTSKDAAERNLKQAFGEIER 145
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ A LY A R+ PRT+ F SV
Sbjct: 146 MASALGLPEPCRETAGVLYRRAVDEGLLPGRSIEAMSTASLYAAARRHGTPRTLVAFTSV 205
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
+ K I RA ++L +E+G +E
Sbjct: 206 SR-VDKLPIQRA----YRYLSSELGLQIE 229
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+TIC +CGLV+E VD EWR F + D RVG P
Sbjct: 37 CPECS--GHLVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTTK 93
Query: 66 LLSGGGLSTVIA-----------KPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I P + L + + R S +RNL QA I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSK-ERNLKQALGEID 152
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + + LY + R PR++ E
Sbjct: 153 RMASALGLPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDELEK 212
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K E+ R +IV+ L+ E+
Sbjct: 213 VSR-VDKMELTRTYRYIVRELKLEI 236
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 18/203 (8%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C RLT D G+ CSECGLV++ +D EWR + + + RVG P
Sbjct: 26 CPECDGRLT---HDSEHGERACSECGLVVDEDEIDHGPEWRAHTQKERN-EKSRVGAPTT 81
Query: 65 PLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQA--------RSSHP-DRNLIQAFKSI 113
L+ GLST I+ A G+T L S ++Q R+ +P +R+L QA I
Sbjct: 82 NLMHDKGLSTKISWQDKDAYGNT-LSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEI 140
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
MS LGL ++++ A IY++ ++ L GR+ E + A L+IA RQ N PR++
Sbjct: 141 ERMSSALGLPKSVRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQANIPRSLDTLT 200
Query: 174 SVANGTTKKEIGRAKEFIVKHLE 196
V+ K I R +++ + LE
Sbjct: 201 EVSR-IGKLPITRTYQYVARELE 222
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 34 CPECG--GRLITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQNKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL 229
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C C R ++ D + G+ CS+CG V E EWR F+ + D+ R G P
Sbjct: 9 SRCQRCNR-GAILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNR-TRTGTPT 66
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKL---------QARSSHP-DRNLIQAFKSI 113
+ + GL+T+I + + LS S+ +++ P DRN QAF +
Sbjct: 67 SLAIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 126
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +L L T+ ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ +
Sbjct: 127 DRLKTKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVA 186
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+ N +K+I R +++ L+ +M
Sbjct: 187 NSIN-IKRKDIARCYRLLLRELDLKM 211
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI + + L+ S+ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 188 SN-IKRKDIARCYRLLLRELNLKM 210
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+ K G++ + AA LY+AC +
Sbjct: 212 VVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N S + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++V D+ +G+ CS+CG V+ + EWR F + + R G P + + GL+
Sbjct: 16 KLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGN-KARAGAPTSLTMHDMGLA 74
Query: 74 TVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISAMSDRLGLV 123
T+I S L+ S+ +L+ S DRN QAF ++ + D+L +
Sbjct: 75 TIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELNRLKDKLAIS 134
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+ ++A IY+K ++ +RGR+ A++A+ LY ACR PR +K+ AN +K+
Sbjct: 135 DAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTATPRNLKDVEEAAN-IKRKD 193
Query: 184 IGRAKEFIVKHLEAEM 199
I R +VK L+ +M
Sbjct: 194 IARCYRLLVKELDLKM 209
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T++ D G+T+C CGLV++ +VD EWR F ++ D RVG P
Sbjct: 43 CPECG-STDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQ-KSRVGAPTTN 100
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K++ R S +RNL QA
Sbjct: 101 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMKRLRTWNERFRTRDSK-ERNLKQALGE 157
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ ++ IY++ + L GR+ E I A L+ A R PR++ E
Sbjct: 158 IDRMASALGLPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEV 217
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
V+ + E RA +IV+ L S+E+ +YL F ++
Sbjct: 218 ARVSR-VDEDEFERAYRYIVREL------SLEIKPADPVEYLPRFASDV 259
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S + RVG P + GL+T I K
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D RVG P
Sbjct: 34 CPECG--GRLISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQ-KSRVGAPTTN 90
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 148 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 208 SAVSR-VDKMELTRTYRYIIREL 229
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V + G+ I GL+LE +D EWR F N+S RVG P+ + GL+T
Sbjct: 80 VVRTAEGELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQ 138
Query: 76 IAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTT 125
I + LS L K Q R D RNL A I MS LG+ +
Sbjct: 139 IDWRSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRS 198
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ +Y++ + +RGR+ E + A LY ACRQE PR++ E V+ KEI
Sbjct: 199 VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIPRSLSEVTEVSR-VENKEIA 257
Query: 186 RAKEFIVKHLEAEM 199
R ++ + LE EM
Sbjct: 258 RTYRYVSQELELEM 271
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVI----AKPTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + ++ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 188 SN-IKRKDIARCYRLLLRELNLKM 210
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 10/193 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE + E EWR F ES + + RVG
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGEL 74
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L G +T I GGS ++ L L DR L +F + ++D L +
Sbjct: 75 NDVWLDGTSSTTFI-----GGSKKM--QHLQNLMTNYDSSDRALKTSFTLLRTIADSLNI 127
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +RA EI K++ LR R A LY+ACR+ + R+++E T K
Sbjct: 128 RDQVVERAKEILKELNQMGHLRSRANSLNTLAVLYLACRESSVSRSLRELVIYDRSLTVK 187
Query: 183 EIGRAKEFIVKHL 195
E+GRA + K L
Sbjct: 188 ELGRAINRLKKVL 200
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 31 CPECG--GRLISDTEHAETVCDDCGLVVEEGEIDRGPEWRAFDAGEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 145 IDRMASALGLPESVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R ++V+ L
Sbjct: 205 SAVSR-VEKDEVARTYRYVVREL 226
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GLV+E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGKGT-LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG----KLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI + + L+ S+ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 188 SN-IKRKDIARCYRLLLRELNLKM 210
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+ K G++ + AA LY+AC +
Sbjct: 212 VVDPIKCISRIASKAGLSEKTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|84995592|ref|XP_952518.1| transcription initiation factor tfiib [Theileria annulata strain
Ankara]
gi|65302679|emb|CAI74786.1| transcription initiation factor tfiib, putative [Theileria
annulata]
Length = 341
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 10/193 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C CK + VV DH G+ +C CG VLE + E EWR F ES + + RVG
Sbjct: 15 CTTCKDSSTVVVDHVEGNQLCLNCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRVGEL 74
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L G +T I GGS ++ L L DR L +F + ++D L +
Sbjct: 75 NDVWLDGTSSTTFI-----GGSKKM--QHLQNLMTNYDSSDRALKTSFTLLRTIADSLNM 127
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +R+ EI K++ LR R+ A LY+ACR+ + R+++E T K
Sbjct: 128 RDQVVERSKEILKELNQMGHLRSRSNSLNTLAVLYLACRESSVSRSLRELVIYDRSLTVK 187
Query: 183 EIGRAKEFIVKHL 195
E+GRA + K L
Sbjct: 188 ELGRAINRLKKVL 200
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C + T +V D + G+ C +CG V+ + EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNEGENKS--RAGVPTSL 67
Query: 66 LLSGGGLSTVI----AKPTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSISA 115
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L + ++ ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 128 LKDKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQA 187
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 188 SN-IKRKDIARCYRLLLRELNLKM 210
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K +A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C+ +V D G+T C +CGL+ E ++D EWR F E D + RVG P
Sbjct: 57 TTCPECQ--GRIVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPT 113
Query: 64 NPLLSGGGLSTVI----------AKPTAGGST-ELLSGSLGKLQARSSHPDRNLIQAFKS 112
L+ GLST I A PT + E L + + + + +RNL QA
Sbjct: 114 TQLMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQ-ERNLKQALGE 172
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M LGL +++ A +Y++ + L GR+ E + A LY A RQ++ PR + F
Sbjct: 173 IQRMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTF 232
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K I RA ++ + L
Sbjct: 233 ADVSR-VEKIRIQRAYRYLSREL 254
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 2 ADSYCADC-------KRLTE----VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE 50
A++ C DC +R E ++ D +T+C +CGLV+E +D EWR F
Sbjct: 48 AETVCEDCGLVVXERERCPECGGRLITDDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAA 107
Query: 51 SSDHDPVRVGGPLNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------A 97
D + RVG P ++ GLST I K G S L S K+Q
Sbjct: 108 EKD-EKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRT 164
Query: 98 RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157
R S +RNL QA I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY
Sbjct: 165 RDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLY 223
Query: 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ RQ PR++ E +V+ K E+ R +I++ L
Sbjct: 224 ASARQAGTPRSLDEISAVSR-VDKMELTRTYRYIIREL 260
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 42 TVCPECGS-KQLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAF-----DHDQRMKRSRV 95
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 96 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 155
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ N PRT+
Sbjct: 156 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTL 215
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ ++KEIGR FI + L
Sbjct: 216 DEIAEVSR-VSRKEIGRTYRFISREL 240
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V + C +CGL+LE ++D EWR F ++S RVG P
Sbjct: 27 CPECDS-SSLVRSADESEVSCEDCGLILEEETIDRGPEWRAF-DQSERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ D+ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I + L EM
Sbjct: 205 SR-VERMEIGRTYRYISQELSLEM 227
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D +T+C +CGLV++ +D EWR F + D + RVG P ++ GLST I
Sbjct: 40 DSEHAETVCQDCGLVVDEGEIDRGPEWRAFDSSEKD-EKSRVGAPTTNMMHDQGLSTNIG 98
Query: 78 ---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVT 124
K G S L S K+Q R S +RNL QA I M+ LGL
Sbjct: 99 WQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPE 155
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K EI
Sbjct: 156 NVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEIAAVSR-VEKDEI 214
Query: 185 GRAKEFIVKHL 195
R ++++ L
Sbjct: 215 ARTYRYVIREL 225
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRVGGPLN 64
C C + T +V D + G+ C +CG V+ VDE+ EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDATTGENFCGKCGFVI-TDKVDESGPEWRSFSNEGENKS--RAGVPTS 66
Query: 65 PLLSGGGLSTVI----AKPTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGH 186
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 187 ASN-IKRKDIARCYRLLLRELNLKM 210
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 NKTQRDVAEAAGVT 285
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +V D+ G+ C +CG+V+E +D+ EWR F +E D R G P++
Sbjct: 9 CPECGSI-HLVKDYDRGELTCYDCGIVIEDSLIDQGPEWRAFDSEQ-DGKRSRTGSPMSF 66
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K G + S + K R S+ +RNL A + ++
Sbjct: 67 LSHDKGLATEISWSNKDYYGKRIPHKNRSQIYRVRKWHQRIRVSNAAERNLALALQVLNE 126
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y +CR N PRT+ E V
Sbjct: 127 DGAKLGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKV 186
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ KK+IG+A + K L
Sbjct: 187 SE-VNKKKIGKAYRHLAKEL 205
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 15/209 (7%)
Query: 2 ADSYCADCKRLTEVVFDHS-AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A + C +C ++ V HS G+ IC +CGLVLE +D EWR F ++ RVG
Sbjct: 22 APATCPECD--SDNVVQHSDPGERICKDCGLVLEESMIDSGPEWRAFDHQERQQKS-RVG 78
Query: 61 GPLNPLLSGGGLSTVI--AKPTAGG---STELLS--GSLGKLQARSSHPD---RNLIQAF 110
P + GL+T I A G S+E S L K Q R D RNL A
Sbjct: 79 APTTQTMHDKGLTTQIDWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFAL 138
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ +++ + IY++ + +RGR+ E + A LY CRQE PR+++
Sbjct: 139 SEIDRMASALGVPRAVREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIPRSLE 198
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ + EI R +I L E+
Sbjct: 199 EITEVSR-IERIEISRTYRYISNELGLEL 226
>gi|448434357|ref|ZP_21586167.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445685273|gb|ELZ37628.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 333
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T V + +C +CGLV+EA +D EWR F ++ D +P R G PL
Sbjct: 54 CPECGGRTRV----EGAERVCGDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSDRLG 121
GLST I + T + + + Q S+ DRN + A+ I ++ L
Sbjct: 108 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVLE 167
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L +++D A ++ +++ LRGR+ E AAC+Y+ACR + RTV E C A +
Sbjct: 168 LPDSVRDTACSLFDSAQEESLLRGRSLEGFAAACVYVACRTADVARTVGEVCDEAKAS 225
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 143
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E
Sbjct: 144 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 203
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K E+ R +I++ L
Sbjct: 204 SAVSR-VDKMELTRTYRYIIREL 225
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 17/209 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGG 61
+C +C +VV D SAGD +C +CG++L +D++ EWR FAN+ DP RVG
Sbjct: 9 HCRECGS-KDVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGD 67
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQARSSHPDRNLIQAFKSIS 114
+ L LST + P GG ++ A+ RN+ + I
Sbjct: 68 VADARLDSLSLSTYLVDPKKGGGGADGEAGRKHKRPNISSDSAKVKRMQRNMAR----IQ 123
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQK-PLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
++D L L I + A ++Y + E Q +RG +E++ A L+IACR+ R++KEF
Sbjct: 124 EVADYLSLPKKIVEIALDVYAEAEKQGVNMRGPERESMAVAVLFIACRKAGNARSLKEF- 182
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMGQS 202
A+G K+ IG++ + + L+ E+ Q+
Sbjct: 183 EEASGIPKRRIGKSFMSLQRRLDLEVKQA 211
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S RVG P + GL+T I K
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 172
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 173 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 231
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 232 SQELGLEM 239
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 31 CPECG--GRLVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 87
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 144
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E
Sbjct: 145 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 204
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K EI R ++++ L
Sbjct: 205 DAVSR-VEKDEIARTYRYVIREL 226
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C+ +V D G+T C +CGL+ E ++D EWR F E D + RVG P
Sbjct: 57 TTCPECQ--GRIVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPT 113
Query: 64 NPLLSGGGLSTVI----------AKPTAGGST-ELLSGSLGKLQARSSHPDRNLIQAFKS 112
L+ GLST I A PT + E L + + + + +RNL QA
Sbjct: 114 TQLMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQ-ERNLKQALGE 172
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M LGL +++ A +Y++ + L GR+ E + A LY A RQ++ PR + F
Sbjct: 173 IQRMGSALGLPEPVRETAGVLYRRAVESDLLPGRSIEGMATASLYAAARQQHFPRPLTTF 232
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
++ K I RA ++ + L
Sbjct: 233 ADISR-VEKIRIQRAYRYLSREL 254
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 46/235 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D G+T+C +CGLV+E +D EWR F + S RVG P
Sbjct: 28 CPECS--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DASEKDSKSRVGAPTTN 84
Query: 66 LLSGGGLSTVIA--------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K +G T + LS ++G
Sbjct: 85 MMHDKGLSTNIGWQDKDAYGKSLSGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSSRQREK 144
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R S +RNL QA + M+ LGL +++ A+ IY++ D+ L
Sbjct: 145 MQRLRTWNERFRTRDSK-ERNLKQALGEVDRMASALGLPDNVRETASVIYRRALDEDLLP 203
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
GR+ E + A LY A RQ PR++ E +V+ K EI R ++V+ L+ E+
Sbjct: 204 GRSIEGVSTASLYAAARQAGTPRSLDEIAAVSR-VEKDEIARTYRYVVRELKLEI 257
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D +T+C +CGLV+E +D EWR F D + RVG P ++ GLST I
Sbjct: 41 DSEHAETVCQDCGLVVEEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTNMMHDQGLSTNIG 99
Query: 78 ---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVT 124
K G S L S K+Q R S +RNL QA I M+ LGL
Sbjct: 100 WQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPE 156
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K EI
Sbjct: 157 NVRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQAGTPRSLDEISAVSR-VGKDEI 215
Query: 185 GRAKEFIVKHL 195
R ++++ L
Sbjct: 216 ARTYRYVIREL 226
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 9 CKRLTEVVF--DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPL 66
C+R + VF D + G+ CS+CG V E EWR F+ + D+ R G P +
Sbjct: 11 CQRCNKGVFLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNR-TRTGTPTSLA 69
Query: 67 LSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAM 116
+ GL+T+I + + LS S+ R DRN QAF + +
Sbjct: 70 MHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRL 129
Query: 117 SDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+L L + ++ IY+K D+ +RGR+ ++AA LY ACR PRT+ + V+
Sbjct: 130 KTKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTD---VS 186
Query: 177 NGTT--KKEIGRAKEFIVKHLEAEM 199
NG +K+I R +++ L+ +M
Sbjct: 187 NGINIKRKDIARCYRLLLRELDLKM 211
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E G+++E +D EWR F N + + RVG P + GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 156
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 157 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISEVSR-VDRKEIGRTYRYI 215
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 216 SQELGLEM 223
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 25 ICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA--KPTA- 81
+C++CGLV+E +D EWR F D RVG P+ +L GLST I K A
Sbjct: 64 VCTDCGLVVEDQRIDAGPEWRAFDAAERDKRS-RVGAPMTEMLHDKGLSTTIGFDKTDAY 122
Query: 82 ----GGSTELLSGSLGKLQARSSHP---DRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
GG L RS DRNL A I M+ LGL I++ A+ IY
Sbjct: 123 GNALGGRKRRQLKRLRTWNRRSKTENAHDRNLRHALGEIDRMASALGLPEPIRETASVIY 182
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
++ D+ LRGR+ E + AA LY A R + R++ E +V+ EI RA +I +
Sbjct: 183 RRALDEDLLRGRSIEGMAAASLYAASRLDGVARSIDEIATVSR-VDDLEIKRAYRYIDRE 241
Query: 195 LEAEMGQSVEMGTIHASDYLVIF 217
L +E H ++YL F
Sbjct: 242 L------GLETPPAHPNEYLGRF 258
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
S C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 39 SVCPECGS-RQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAF-----DHDQRMKRSRV 92
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 93 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 152
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 153 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ ++KEIGR FI + L
Sbjct: 213 DEIAEVSR-VSRKEIGRTYRFISREL 237
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T C ECGLV+ A +D EWR F E+ R G PL GLST I + T
Sbjct: 20 ETACDECGLVVAADEIDRGPEWRSFERETRK----RTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L L + +RS S +RN + AF I LGL +++DRA +++ +
Sbjct: 76 TGRKRRLFARLRRQHSRSRIASKAERNKVYAFTEIRRQVCALGLSDSVRDRACVLFESAQ 135
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D LRGR+ E AA +Y CR + RT+ E +VA ++ E+ A + + + L
Sbjct: 136 DADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKA-SRDELTAAYDALNRDL--- 191
Query: 199 MGQSVEMGTIHASDYLVIF 217
+ G I ++YL F
Sbjct: 192 ---GLPTGPIDPTEYLARF 207
>gi|269866459|ref|XP_002652280.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062817|gb|EED41774.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 175
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 9/153 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V+ D+ G +C +CG V VDE EWR F+ +S+ DP RVG +NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLV 123
L L TVI+ + S +L ++Q ++ PDR L FK I + +R L
Sbjct: 73 FLDVEQLDTVISAGSGANSY-----NLNRIQMKNYMRGPDRVLKNGFKLIQSFCERGFLT 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACL 156
TI D+A I+K VE +K L+GR + + AC+
Sbjct: 128 QTIIDKAQAIFKDVESKKLLKGRIRRCM-GACI 159
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D +T+C +CGLV+E +D EWR F D RVG P
Sbjct: 28 CPECG--GRVLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS + R +RNL QA I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ + PR++ E +V
Sbjct: 145 MASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEISAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ K E+ R +I++ L
Sbjct: 205 SR-VEKMELTRTYRYIIREL 223
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
S C +C ++V D+ + +C CGLVL+ +D EWR F DHD RV
Sbjct: 39 SVCPECG-SRQLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAF-----DHDQRMKRSRV 92
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 93 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 152
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 153 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 212
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ ++KEIGR FI + L
Sbjct: 213 DEVAEVSR-VSRKEIGRTYRFISREL 237
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ +C++CGLV + +D EWR F E+SD RVG P+
Sbjct: 46 CPEC--AGRIRPDSDRGERVCADCGLVSDGDEIDYGPEWRSFEGETSDRS--RVGAPITE 101
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQARSSH------PDRNLIQAFKSISA 115
GLST I +SG L +L+ + +RNL QA +
Sbjct: 102 RRHDKGLSTTIGWENRDAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELER 161
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ +++ L GR+ EA+ A LY A RQ+ PRT F SV
Sbjct: 162 MASALGLSEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQGTPRTFSAFESV 221
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ + RA ++ LE E+
Sbjct: 222 SR-VDDESTKRAYRYLSSELELEIA 245
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C++CGLV+ +D EWR F E+ R G PL GLST I + T
Sbjct: 20 ETVCTKCGLVVAVDEIDRGPEWRSFERETRK----RTGAPLTRSRHDRGLSTEIGRSTRL 75
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L L + RS S +RN + AF I LGL +++DRA +++ +
Sbjct: 76 TGRKRRLFARLRRQHTRSRIASKAERNRVYAFTEIRRQVCALGLSDSVRDRACVLFESAQ 135
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D LRGR+ E AA +Y CR + RT+ E +VA ++ E+ A + + + L
Sbjct: 136 DADLLRGRSLEGFAAATIYAVCRTDGVSRTLAEIVTVAKA-SRDELTAAYDALNRDL--- 191
Query: 199 MGQSVEMGTIHASDYLVIF 217
+ G I S+YL F
Sbjct: 192 ---GLPTGPIDPSEYLARF 207
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 103/229 (44%), Gaps = 20/229 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I LS + +R + +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V+E +V
Sbjct: 150 MGSALGVPEDVRETASVIYRRALSEDLLPGRSIEGVTTAALYAAIRQMGLPRSVEEVGAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
+ + E RA +I + L S+E+G YL F ++ N
Sbjct: 210 SR-VDEMEFKRAYRYINQEL------SLEVGPPAPDQYLPRFASDLNVN 251
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C +CGLV++ +D EWR F D + RVG P
Sbjct: 47 CPECS--GRLVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L + K+Q R S +RNL QA
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRS--LSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 160
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 161 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 220
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
+V+ K EI R ++++ L
Sbjct: 221 SAVSR-VEKDEIARTYRYVIREL 242
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 58 CPECD--GRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 114
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 115 MMHDQGLSTNIGWQDKDAYGKS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 171
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 172 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 231
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K EI R ++++ L
Sbjct: 232 AGVSR-VEKDEIARTYRYVIREL 253
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 55 CPECD--GRLMSDTEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 111
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 112 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 168
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 169 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 228
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K EI R ++++ L
Sbjct: 229 AGVSR-VEKDEIARTYRYVIREL 250
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETS-EWRIFANESSDHDPVRVGGPLN 64
C C + T +V D + + C +CG V+ VDE+ EWR F+NE + R G P +
Sbjct: 11 CPRCGQGT-LVTDATTAENFCGKCGFVI-TEKVDESGPEWRSFSNEGENKS--RAGVPTS 66
Query: 65 PLLSGGGLSTVI----AKPTAGGSTELLSGSLGKLQARSSHP------DRNLIQAFKSIS 114
+ GL+TVI T T + ++ +L+ S DRN QAF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
+ D+L + + ++A IY+K ++ +RGR+ A++A+ LY ACR PRT+K+
Sbjct: 127 RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQ 186
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
+N +K+I R +++ L +M
Sbjct: 187 ASN-IKRKDIARCYRLLLRELNLKM 210
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
++ K IS ++ + GL K A +I + E+QK G++ + AA LY+AC +
Sbjct: 212 VVDPVKCISRIASKAGLSEKTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGE 271
Query: 166 PRTVKEFCSVANGT 179
+T ++ A T
Sbjct: 272 SKTQRDVAEAAGVT 285
>gi|25396143|pir||C88922 protein W03F9.5 [imported] - Caenorhabditis elegans
Length = 148
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIK 127
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQ 125
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 37 ENVCPECGS-RQLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAF-----DHDQRVKRSR 90
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 91 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 150
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A IY+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 151 ALSELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 210
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 211 LDEIAEVSR-VSRKEIGRTYRFISREL 236
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 18 DHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA 77
D+ + +CS+CGLV++A VDE EWR F + RVG P+ + GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAF-DSDQQMKRSRVGAPMTYAIHDKGLSTMID 114
Query: 78 KPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ +S L K Q R + +RNL A + M+ LGL T++
Sbjct: 115 WRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALSELDRMASALGLPRTVR 174
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ ++ EIGR
Sbjct: 175 ETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIGEVSR-VSRIEIGRT 233
Query: 188 KEFIVKHL 195
FI + L
Sbjct: 234 YRFISREL 241
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C ++V D+ + C CGLVLE +D EWR F DHD RV
Sbjct: 37 TVCPECGS-RQLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAF-----DHDQRMKRSRV 90
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 91 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 150
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ ++ +RGR+ E + AA LY ACRQ N PRT+
Sbjct: 151 LSELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTL 210
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ ++KEIGR FI + L
Sbjct: 211 DEIAEVSR-VSRKEIGRTYRFISREL 235
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 40 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 93
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 154 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 213
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
V+ ++KEIGR FI + L
Sbjct: 214 IAEVSR-VSRKEIGRTYRFISREL 236
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T+CS+CGLV++ +D EWR F+++ D R G P
Sbjct: 33 CPECD--GRLVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I + LS + R +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALGEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V++ +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAGIRQMGLPRSVEDVAAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ + E RA +I + L E+G
Sbjct: 210 SR-VDEMEFKRAYRYINQELGLEIG 233
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 45 CPECG--GRLVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 101
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L + K+Q R S +RNL QA
Sbjct: 102 MMHDQGLSTNIGWQDKDAYGRS--LSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 158
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 159 IDRMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 218
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++++ L E+
Sbjct: 219 AGVSR-VEKDEIARTYRYVIRELGLEV 244
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRV 59
+ C +C +++ D+ + C CGLVLE +D EWR F DHD RV
Sbjct: 37 TVCPECGS-RQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAF-----DHDQRMKRSRV 90
Query: 60 GGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQA 109
G P+ + GLST+I +S L K Q R S+ +RNL A
Sbjct: 91 GAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFA 150
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT+
Sbjct: 151 LSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTL 210
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ ++KEIGR FI + L
Sbjct: 211 DEIAEVSR-VSRKEIGRTYRFISREL 235
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 41 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
V+ ++KEIGR FI + L
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISREL 237
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 11/196 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIF-ANESSDHDPVRVGGPLN 64
C +C T +V+D G+ C CG +++ +D ++RIF +N+ R+G P +
Sbjct: 11 CPNCGS-TNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRS--RIGAPES 67
Query: 65 PLLSGGGLSTVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDR 119
LL GLST I + G E + L + Q+R S +RNL A + ++ +
Sbjct: 68 ILLHDKGLSTDIGIDRSLTGLMREKMY-RLRRWQSRLRVSDAAERNLAFALSELDRITAQ 126
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E ++
Sbjct: 127 LKLPKHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISR-V 185
Query: 180 TKKEIGRAKEFIVKHL 195
KKEIGR+ FI ++L
Sbjct: 186 DKKEIGRSYRFIARNL 201
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ +A EI ++ + G++ +VAA LYIA
Sbjct: 205 PKKLFVKPTDYVNKFADELGLSEKVRRKAVEILEEAYRKGLTSGKSPAGLVAAALYIASL 264
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E +A T R KE + K
Sbjct: 265 LEGEKRTQREVAEIARVTEVTVRNRYKELVEK 296
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 47 CPECG--GRLVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 103
Query: 66 LLSGGGLSTVIA---KPTAGGS--------TELLSGSLGKLQARSSHPDRNLIQAFKSIS 114
++ GLST I K G S + L + + R S +RNL QA I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEID 162
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 163 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEIAG 222
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++++ L E+
Sbjct: 223 VSR-VEKDEIARTYRYVIRELGLEV 246
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + ++ + C +CGL+LE ++D EWR F N S + RVG P
Sbjct: 27 CPECD-SSSLIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ +Y++ + +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASALGVPRSVREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVSAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I + L EM
Sbjct: 205 SR-VDRMEIGRTYRYISQELSLEM 227
>gi|349804613|gb|AEQ17779.1| putative general transcription factor iib isoform 2 [Hymenochirus
curtipes]
Length = 200
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 22/162 (13%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S K Q R +++S+ SDR + T I +A E+
Sbjct: 83 MIGKGTGTASFDEFGNS--KYQNR------------RTMSS-SDRAMMNTYIARKAVEL- 126
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
D P GR+ ++ AA +Y+A + + RT KE +A
Sbjct: 127 ----DLVP--GRSPISVAAAAIYMASQASAEKRTQKEIGDIA 162
>gi|448737841|ref|ZP_21719874.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
gi|445802803|gb|EMA53104.1| transcription initiation factor IIB [Halococcus thailandensis JCM
13552]
Length = 271
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 17 FDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI 76
D + +T C +CGLV+ VD EWR F + D R G PL GLST I
Sbjct: 1 MDDAGEETYCLDCGLVIGEDRVDRGPEWRNFEDGP---DRKRTGAPLTRSRHDRGLSTEI 57
Query: 77 AKPTA-GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+ T G L L + R SS +RN + F + M LGL +I+DRA
Sbjct: 58 GRSTRLTGRKRRLFARLRRQHNRTRISSRAERNRVYGFTEVRRMVGALGLPDSIRDRACV 117
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
+++ +++ LRGR+ E AA +Y CR E RT+ E +VA T+ E+ A + +
Sbjct: 118 LFESAQNEDLLRGRSLEGFAAAAVYAVCRTEALSRTLAEIGTVAKA-TRDELTAAYDALN 176
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIF 217
+ L + G I +YL F
Sbjct: 177 REL------GLPTGPIDPEEYLARF 195
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV-RVGGPLNPLLSGGGLSTVIAK 78
+A +T+C +CGLV++ +D EWR F D D R G PL GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRTF-----DEDECKRTGAPLTAARHDRGLSTEIGR 88
Query: 79 PTAGGSTELLSGSLGKL------QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
T EL S +L Q+R S +RNL + +S L L T++D+
Sbjct: 89 RTDANGNELSSQKQRRLWRLRREQSRGRFQSKAERNLAHGLGEVRRISSALELSETLRDQ 148
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
A +++ +++ LRGR+ EA+ AA +Y ACR +PRT+ E A
Sbjct: 149 ACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCNGRPRTLNEVTDSA 195
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGG 61
C +C ++V D+ + +C+ECGLV++ +D EWR F DHD RVG
Sbjct: 41 CPECGS-RQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAF-----DHDQRMKRSRVGA 94
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFK 111
P+ + GLST+I + +S L K Q R S+ +RNL A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
+ M+ LGL I++ + +Y+K + +RGR+ E + AA LY ACRQ PRT+ E
Sbjct: 155 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 214
Query: 172 FCSVANGTTKKEIGRAKEFIVKHL 195
V+ ++KEIGR FI + L
Sbjct: 215 IAEVSR-VSRKEIGRTYRFISREL 237
>gi|399217725|emb|CCF74612.1| unnamed protein product [Babesia microti strain RI]
Length = 333
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESS---DHDPVRVGGP 62
C DC + V+ DH G+ IC+ CG VLE++ + + EWR F ESS D RVG
Sbjct: 22 CPDCGPMGIVLLDHCEGNQICNNCGRVLESHMISDEQEWRSFNTESSGGAGSDRNRVGEA 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
L+ S V A GG L + + + S+ DR L QAF + ++++ GL
Sbjct: 82 LDHWTE----SQVSATTFLGGGKRL--QQIQESTSVSNQQDRLLRQAFVQLRSIAECFGL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+RA EI K ++ L+GR + A Y+ACR+ + RTVKE T++
Sbjct: 136 QEHTMERAKEIAKDLQLAGHLKGRCNTLNMLAVTYLACREASLFRTVKELIVYDRSLTER 195
Query: 183 EIGRAKEFIVKHL 195
++ R+ + K L
Sbjct: 196 DLARSINKLKKFL 208
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 47/237 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C TE+V D + + +C +CGLVL+ ++D EWR F N S RVG P+
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLSGGGLSTVIA---KPTAGGS---------------------------------TELLS 89
+ GL+T I K G S +E+
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXK 141
Query: 90 GS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKP 142
S L K Q R D RNL A I M+ LG+ ++++ A+ IY++ ++
Sbjct: 142 RSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDL 201
Query: 143 LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
+RGR+ E + A LY ACRQE PR++ E V+ +KEIGR +I + L E+
Sbjct: 202 IRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSR-VPQKEIGRTYRYISQELGLEL 257
>gi|448628519|ref|ZP_21672288.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445758050|gb|EMA09375.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 286
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 13/199 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++CS CGLV+ ++D EWR F+++ D D R G PL GLST I + T
Sbjct: 21 ESVCSGCGLVVGEDAIDPGPEWRSFSDD--DTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLKGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLVIF 217
+ G I +Y+ F
Sbjct: 195 ---GLPTGPIDPREYVPRF 210
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 13/199 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C ECGLV+ +D EWR FA++ D +P R G PL GLST I + T
Sbjct: 22 ETVCGECGLVVAEDRIDRGPEWRSFADD--DTNPERTGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + RL L ++D A + + +
Sbjct: 80 KGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVRDHACSLVRSAQ 139
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ +RGR+ E AA +Y ACR RTV E VA ++ + L E
Sbjct: 140 NEDLVRGRSLEGFAAASVYAACRVAGVSRTVDEVTDVARADANEQ-----QAAYDALNRE 194
Query: 199 MGQSVEMGTIHASDYLVIF 217
+G + +G I +Y+ F
Sbjct: 195 LG--LPVGPIDPVEYIPRF 211
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 12/184 (6%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGL+LE ++D EWR F N S RVG P + GL+T I
Sbjct: 46 CEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYG 104
Query: 86 ELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS L K Q R D RNL A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYR 164
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ + +RGR+ E + + LY ACR E PR++ E +V+ + EIGR +I + L
Sbjct: 165 RALSEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VERMEIGRTYRYISQEL 223
Query: 196 EAEM 199
EM
Sbjct: 224 SLEM 227
>gi|440802920|gb|ELR23836.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 371
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C DC ++ + D ++GDTIC +CGLV+ +D SEWR FA+ D DP R
Sbjct: 28 AQDVCHDCG-TSDFIEDFASGDTICLQCGLVVPDRIIDTRSEWRNFADNEGD-DPSRASR 85
Query: 62 PLNPLLSGG---------------GLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDR 104
L SGG +T + +P +GG+ L +LQARS DR
Sbjct: 86 ADESLPSGGLGCNIATSPPAQSAVSQTTTLRRPGSGGT------QLARLQARSQTDKDDR 139
Query: 105 NLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN 164
++ + ++S ++D + L I+ A E+Y ++ + A+ AA +Y+ACR+
Sbjct: 140 KVLSGYATLSHIADLIALPEKIRLIAKEMYSAFAAKRRKMLFKKNALEAAVIYMACREAK 199
Query: 165 KPRTVKEF 172
PRT KE
Sbjct: 200 VPRTFKEL 207
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I LS + +R + +RNL QA I
Sbjct: 90 LMHDKGLSSQIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V+E +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEEVSAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ + E RA +I + L E+G
Sbjct: 210 SR-VDEMEFKRAYRYINQELSLEIG 233
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 39 ETVCPECGS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 92
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 93 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 152
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 153 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 212
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 213 LDEIAEVSR-VSRKEIGRTYRFISREL 238
>gi|448340358|ref|ZP_21529331.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445630664|gb|ELY83925.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 324
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 30 CPECS--GSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDEE---DRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----------SLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
+ K + RA ++L +E+G +E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIE 228
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 2 ADSYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
++ C +C RL E D + G+T C+ECGLV+ +D EWR F + D R G
Sbjct: 51 SERVCPECGGRLVE---DETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTG 106
Query: 61 GPLNPLLSGGGLSTVIA--KPTAGGST---------ELLSGSLGKLQARSSHPDRNLIQA 109
P ++ GLS+ I A G+T + L + + R S +RNL QA
Sbjct: 107 APTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSK-ERNLKQA 165
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V
Sbjct: 166 LGEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSV 225
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+E +V+ + E RA +I + L+ E+G
Sbjct: 226 EEVGAVSR-VDEMEFKRAYRYINQELDLEIG 255
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 37 ETVCPECG-GRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 90
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 91 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 150
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 151 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 210
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 211 LDEIAEVSR-VSRKEIGRTYRFISREL 236
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T + + C +CGL+LE ++D EWR F N + RVG P
Sbjct: 27 CPECDSTT-LARSADGSEISCEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ +G+ ++++ A+ +Y++ ++ +RGR+ E + + LY ACR E PR++ E +V
Sbjct: 145 MASAMGVPRSVREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEIAAV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + EIGR +I K L EM
Sbjct: 205 SR-VERMEIGRTYRYISKELGLEM 227
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
++ C +C ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ETVCPECG-GRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL 234
>gi|397772740|ref|YP_006540286.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397681833|gb|AFO56210.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 324
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 7 ADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
A+C T + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 28 AECPECTGSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----------SLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERYSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPKPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
+ K + RA ++L +E+G +E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIE 228
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 26/236 (11%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C+ +V +++ GD +L VD SEWR FA + + DP RVG N
Sbjct: 77 CPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSRVGDAGN 128
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDR---------NLIQAFKSISA 115
PLL L T+I+ G T + L + QAR++ L F I
Sbjct: 129 PLLGSNHLDTMISHKD--GRTGIAR-DLNRAQARANTLSNGIYGKSSVAQLSAVFSRIGE 185
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
D + L +++RA +YK V++ + ++G+N+ A++AAC+ ACR RT +E C
Sbjct: 186 KCDAMQLPRGVRERAQHVYKIVDEARAIKGKNEPAVIAACIVYACRDAKVHRTFQEVCK- 244
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYL---VIFLLNIFKNFFFL 228
A +KKE+G+ + +++ Q M ++H S+ LL F N+ L
Sbjct: 245 ALKISKKELGQVFNHVKSVVQSSSAQG-SMVSVHGSNNAQESAEGLLGRFANYLDL 299
>gi|55379386|ref|YP_137236.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448648697|ref|ZP_21679762.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55232111|gb|AAV47530.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445774441|gb|EMA25457.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 286
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F E D D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLVIFLLNI 221
+ G I +Y+ F +
Sbjct: 195 ---GLPTGPIDPREYVPRFATTL 214
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN 164
L L T ++ RA ++ + +D+ + GRN + AACLY A ++++
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQD 258
>gi|448638606|ref|ZP_21676456.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445763385|gb|EMA14584.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 286
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F E D D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSF--EDDDTDRARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLVIFLLNI 221
+ G I +Y+ F +
Sbjct: 195 ---GLPTGPIDPREYVPRFATTL 214
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA ++ + +D+ + GRN + AACLY A ++++ T E A+ T
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQDVALTQAEAAETADVT 273
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 97/201 (48%), Gaps = 16/201 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+CS+CGLV+E SVD EWR F N RVG P
Sbjct: 60 CPECG--GRLASDTEHGETVCSDCGLVVEEDSVDRGPEWRAF-NSGERDSKSRVGAPTTN 116
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
++ GLST I + LSG + + R S +RNL QA I
Sbjct: 117 MMHDKGLSTNIGWQDKDAYGKSLSGRQRRRMQRLRTWNERFRTRDSK-ERNLKQALGEID 175
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF +
Sbjct: 176 RMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQVGNPRSLDEFTA 235
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R ++V+ L
Sbjct: 236 VSR-VEKMELTRTYRYVVREL 255
>gi|52550004|gb|AAU83853.1| transcription initiation factor IIB [uncultured archaeon GZfos34G5]
Length = 306
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 15 CPECGS-KNVITDSRHAELYCADCGIVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 123
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 124 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 182
Query: 185 GRAKEFIVKHLEAEMGQS 202
RA F+++ LE ++ +
Sbjct: 183 RRAYIFLLRRLEIKLAPA 200
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 2 ADSYCADCKRLTEVVFDHS-AGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A + C++C + V HS G+ IC +CGLV+E +D EWR F N RVG
Sbjct: 21 ATTSCSECG--SSNVLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVG 77
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAF 110
P + GL+T I LS L K Q R D RNL A
Sbjct: 78 APTTQTIHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFAL 137
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ + ++ + +Y++ ++ +RGR+ E + A LY CRQE PR+++
Sbjct: 138 SEIDRMASALGVPQSTREVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQEGLPRSLE 197
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
E V+ + E+ R +I L E+
Sbjct: 198 EVTEVSR-IERIEVSRTYRYISSELGLEI 225
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 22/207 (10%)
Query: 6 CADC--KRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
C +C KR E D+ GD IC CG ++E++ +D SEWRIF++++ ++PVR+G P
Sbjct: 4 CINCGSKRFLE---DYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPE 60
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL G ST+I+K G + ++ L K Q ++ + ++ L F IS
Sbjct: 61 NPLL-GNSSSTLISKGLKGSNK--INEKLLKAQNQNDNCKSEKYLASVFSIISFFLTNGS 117
Query: 122 LVTTIKDRANEIYKKVED-----------QKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
IK++ E++K D + LR ++ +I+AA ++I C+ E+ PR+ K
Sbjct: 118 FSKLIKEKVQELFKNYYDYLTLKSNGSRIKTTLRKKDTFSIIAASIFIICKNESIPRSFK 177
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEA 197
E + KK+IG + K LE
Sbjct: 178 EISELTK-VKKKDIGNRVRIMEKALEG 203
>gi|409721273|ref|ZP_11269480.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448722199|ref|ZP_21704737.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445789910|gb|EMA40583.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 284
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 28/214 (13%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
S +T C+ CGLV+ A ++D EWR FA+ D R G PL GLST I
Sbjct: 17 SGDETFCTSCGLVVAADNIDRGPEWRSFAD---GPDRKRTGAPLTRSRHDRGLSTEI--- 70
Query: 80 TAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
G + L+G +L AR +S +RN + AF I + LGL T++DR
Sbjct: 71 ---GRSIRLTGRKRRLFARLRRQHNRARIASKAERNRVYAFTEIRRLVGALGLPETVRDR 127
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189
A +++ +++ LRGR+ E AA +Y CR E RT+ E A ++ E+ A +
Sbjct: 128 ACVLFESAQNEDLLRGRSLEGFAAAAVYAVCRTEGLSRTIAEVRDAAKA-SRGELVAAYD 186
Query: 190 FIVKHLEAEMGQSVEMGTIHASDYLVIF--LLNI 221
+ + L + G I ++YL F LL++
Sbjct: 187 ALNREL------GLPTGPIDPAEYLPRFASLLDV 214
>gi|169609643|ref|XP_001798240.1| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
gi|160701885|gb|EAT84190.2| hypothetical protein SNOG_07914 [Phaeosphaeria nodorum SN15]
Length = 346
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C DC+ + +V + S+GDT+C CG VL ++D SEWR H+ + ++
Sbjct: 38 CPDCREMPPNLVEEFSSGDTVCGSCGRVLGERAIDTRSEWR--------HENI-----VD 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGL 122
G LST I G L L + +S+H +++L A+ I+ + D +
Sbjct: 85 NSTDGSQLSTEIGFGDGG----LRVRELSRAHNKSNHDKANKSLQAAYSQIATLCDSQNI 140
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ A +++ +D K +G++Q+AI+A C++IACR + R+ +E + N +KK
Sbjct: 141 SKPTAETAKLLFRVTDDAKLFKGKSQDAIIAGCIFIACRNHGQQRSFREIFKMTN-VSKK 199
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGT 207
E+GR K LEA + ++ ++GT
Sbjct: 200 EVGRT----FKALEAFLQKNQKVGT 220
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C++CGLV++ +D EWR F D + RVG P
Sbjct: 70 CPECD--GRLMSDAEHAETVCADCGLVVQEGEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 126
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 127 MMHDQGLSTNIGWQDKDAYGRS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 183
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ ++ L GR+ E + A LY + RQ PR++ E
Sbjct: 184 IDRMASALGLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQAGTPRSLDEI 243
Query: 173 CSVANGTTKKEIGRAKEFIVKHL 195
V+ K EI R ++++ L
Sbjct: 244 EGVSR-VEKDEIARTYRYVIREL 265
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 45/231 (19%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++C LV+E +D EWR F D + RVG P
Sbjct: 46 HCPECG--GRLVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 102
Query: 65 PLLSGGGLSTVIA-------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K G T + LS ++G
Sbjct: 103 NMMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQREK 162
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R+S +RNL QA I M+ LGL T+++ ++ IY++ ++ L
Sbjct: 163 MQRLRTWNERFRTRNSK-ERNLKQALGEIDRMASALGLPDTVRETSSVIYRRALEEDLLP 221
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
GR+ E + A LY A RQ PR++ E +V+ K EI R ++V+ L
Sbjct: 222 GRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKAEIARTYRYVVREL 271
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 15 CPECGS-KNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 73 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 123
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 124 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 182
Query: 185 GRAKEFIVKHLEAEMGQS 202
RA F+++ LE ++ +
Sbjct: 183 RRAYIFLLRRLEIKLAPA 200
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
A C +C ++ D G+ C+ CGLV++ +D EWR + D RVG
Sbjct: 21 QATDTCPECG--GQLNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHTQKERDQKS-RVG 77
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGS----LGKLQ-----ARSSHP-DRNLIQAF 110
P L+ GLST I+ LS + +L+ +R+ +P +RNL QAF
Sbjct: 78 APTTNLMHDKGLSTTISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAF 137
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LGL ++++ A IY++ + L GR+ E + A ++IA RQ N PR++
Sbjct: 138 AEIERMASALGLPQSVRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQANIPRSLD 197
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLE 196
V+ K I R ++ + L+
Sbjct: 198 TLAEVSR-VEKLSITRTYRYVTRELD 222
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I G+V+E +D EWR F N S RVG P + GL+T I K
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 166
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 167 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 225
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 226 SQELGLEM 233
>gi|268322998|emb|CBH36586.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 13/198 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D + C++CG+V+ VD EWR + E + +R G P++
Sbjct: 11 CPECGS-KNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKR-IRTGPPMSY 68
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVT 124
+ GL T PT G L +L+ S D+ L A I M+ LGL
Sbjct: 69 RIHDKGLGT----PTPG-----LPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPN 119
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
IK+ + +Y+K + ++GR+ E +V+A LYI CRQ PRT+KE V+ KK I
Sbjct: 120 NIKEATSVLYRKAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKK-I 178
Query: 185 GRAKEFIVKHLEAEMGQS 202
RA F+++ LE ++ +
Sbjct: 179 RRAYIFLLRRLEIKLAPA 196
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C T ++FD G+ +C+ CGLV+E D EWR F + + R G P+
Sbjct: 84 CPSCGS-TALIFDSERGELVCNNCGLVIEENVTDTGPEWRAF-DADQRNSRARTGAPMKY 141
Query: 66 LLSGGGLSTVI----------AKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISA 115
GL T I P+ + K + +S +RN + A ++
Sbjct: 142 TRPNKGLVTEIDLYNKDIRGVRIPSKRQAQLYRMRKWHKRASIASSSERNYLIALPELNR 201
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+S LGL I++ A +Y+K +RGR E +V A +Y ACR+ PRT+ E ++
Sbjct: 202 VSSYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATI 261
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ G KKEIGRA I L
Sbjct: 262 S-GLPKKEIGRAYRAISHEL 280
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 2 ADSYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
++ C +C RL E D + G+T C+ECGLV+ +D EWR F + D R G
Sbjct: 28 SERVCPECGGRLAE---DEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTG 83
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAF 110
P ++ GLS+ I LS + R +RNL QA
Sbjct: 84 APTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQAL 143
Query: 111 KSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVK 170
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V+
Sbjct: 144 GEIERMASALGVPKDVRETASVIYRRALSEDLLPGRSIEGVSTAALYAGIRQMGLPRSVE 203
Query: 171 EFCSVANGTTKKEIGRAKEFIVKHLEAEMG 200
E +V+ + E RA +I + L+ E+G
Sbjct: 204 EVGAVSR-VDEMEFKRAYRYINQELDLEIG 232
>gi|448336699|ref|ZP_21525792.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445628249|gb|ELY81558.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 324
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 19/209 (9%)
Query: 7 ADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
A+C T + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 28 AECPECTGSIRHDAEHGERTCAECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLS----------GSLGKLQARSSHPDRNLIQAFKSISA 115
+ GLST I +S + + + + +RNL QAF I
Sbjct: 85 VKHDRGLSTTIGWRNEDAYGNRVSERKRDRLRRLRTWNERFSSKNAQERNLKQAFGEIER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A +Y++ D++ L GR+ EA+ ACLY A RQ PRT+ F SV
Sbjct: 145 MASALGLPEPCRETAGVLYRRAVDEELLPGRSIEAMATACLYAAARQHGTPRTLVAFESV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
+ K + RA ++L +E+G +E
Sbjct: 205 SR-VEKLPVQRA----YRYLSSELGLRIE 228
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I G+V+E +D EWR F N S RVG P + GL+T I K
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 173
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 174 VIYRRALNEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 232
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 233 SQELGLEM 240
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---K 78
G+ I E GL++E +D EWR F N S RVG P + GL+T I K
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 79 PTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G S S L K Q R D RNL A I M+ LG+ ++++ A+
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVREVAS 160
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ ++ +RGR+ E + A LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 161 VIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSR-VERKEIGRTYRYI 219
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 220 SQELGLEM 227
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 45/231 (19%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C++CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA-------KPTAGGST------ELLSGSLG------------------ 93
++ GLST I K G T + LS ++G
Sbjct: 86 NMMHDQGLSTNIGWQXEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGRSLSSRQRQK 145
Query: 94 ---------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLR 144
+ + R S +RNL QA I M+ LGL +++ A+ IY++ ++ L
Sbjct: 146 MQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLLP 204
Query: 145 GRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
GR+ E + A LY A RQ PR++ E +V+ K E+ R +I++ L
Sbjct: 205 GRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VEKMELTRTYRYIIREL 254
>gi|448346521|ref|ZP_21535406.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445632724|gb|ELY85935.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 324
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ C+ECGLVL+A ++D EW +E D RVG P++
Sbjct: 30 CPEC--TGSIRHDAEHGERTCTECGLVLDADAIDYGPEWLCLDDE---EDRRRVGPPVSS 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSIS 114
+ GLST I +S + ++++ +RNL QAF I
Sbjct: 85 IKHDRGLSTTIGWRDEDAYGNRVSERKRERLRRLRTWNERFSSKNAQ-ERNLKQAFGEIE 143
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL ++ A +Y++ D+ L GR+ EA+ ACLY A RQ PRT+ F S
Sbjct: 144 RMASALGLPEPCRETAGVLYRRAVDEDLLPGRSIEAMATACLYAAARQHGTPRTLVAFES 203
Query: 175 VANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
V+ K + RA ++L +E+G +E
Sbjct: 204 VSR-VEKVPVQRA----YRYLSSELGLRIE 228
>gi|351694833|gb|EHA97751.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 131
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 63/108 (58%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV +D SEWR F+N + DP +VG NPLLS G LST
Sbjct: 23 LVQDYRAGDMICPECGLVAGDRVIDVGSEWRTFSNGKATKDPSQVGDAQNPLLSNGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+I K T S + S + + S D+ ++ AFK I+ M+DR+ L
Sbjct: 83 MIGKGTGAASFDEFGYSKYQNRRTMSSSDQAMMNAFKEITTMADRINL 130
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
VV D G+ I + G V+ ++ + EWR F +E D D R G P++ GLST
Sbjct: 2 VVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSEG-DADRARTGAPVSLAFHDMGLST 60
Query: 75 VIAKPTAGGSTELLSGS----LGKLQ-----ARSSHP-DRNLIQAFKSISAMSDRLGLVT 124
VI K + S + + +G+L+ + S P +R+L QAF +S + DRLGL
Sbjct: 61 VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD 120
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
+ ++A +Y+K +++ +RG + +++AA +Y A RQ RT+ E S + K+
Sbjct: 121 YVIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLRTLDEI-SASIDVKPKQA 179
Query: 185 GRAKEFIVKHLE 196
GR+ IV L+
Sbjct: 180 GRSYRRIVTELD 191
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTV 75
V + G+ I GLVLE +D EWR F + S RVG P + GL+T
Sbjct: 45 VVKTADGELIHEPTGLVLEDEHIDRGPEWRAFTH-SERQSKSRVGAPTTQTMHDKGLTTQ 103
Query: 76 IAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTT 125
I + +S L K Q R D RNL A I M+ LG+ +
Sbjct: 104 IDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRS 163
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ Y++ D+ +RGR+ E A LY ACRQE+ PR++ E VA +KEIG
Sbjct: 164 VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIPRSLDEVAEVAR-VEQKEIG 222
Query: 186 RAKEFIVKHLEAEM 199
R ++ + L E+
Sbjct: 223 RTYRYLSQELGLEI 236
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ I G+V+E +D EWR F N S RVG P + GL+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 228 SQELGLEM 235
>gi|448732993|ref|ZP_21715239.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445803326|gb|EMA53623.1| transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 351
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C E +H G+ C+ECGLV++ +D +EW + E + RVG P+ P
Sbjct: 54 CPECGGRLEHDPEH--GERACTECGLVVDEDEIDLGAEWTAHSAEEQ-QERSRVGSPVTP 110
Query: 66 LLSGGGLSTVIA-KPTAGGSTELLSGSLGKLQA-RSSH--------PDRNLIQAFKSISA 115
+ GLST I + L + K+Q R+ H +RNL I
Sbjct: 111 TMHDKGLSTEIDWRDQDARGNPLSTRQRRKMQRLRTWHSRSQTDGTQERNLRHGLGEIDR 170
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL +I++ A+ IY++V D+ L GR+ E++ AA LY A RQ R++ +V
Sbjct: 171 MASALGLPASIRETASVIYRRVIDENLLIGRSVESVSAAALYAATRQSTSARSLDGIVTV 230
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
A K+ IGR +I + L E+
Sbjct: 231 AR-MDKQSIGRTYRYISRELGLEI 253
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
G+ I G+V+E +D EWR F N S RVG P + GL+T I
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 82 GGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LS L K Q R D RNL A + M+ LG+ ++++ A+
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVREVAS 168
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEIGR +I
Sbjct: 169 VIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIPRSLEEISEVSR-VERKEIGRTYRYI 227
Query: 192 VKHLEAEM 199
+ L EM
Sbjct: 228 SQELGLEM 235
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C C ++ V D G+ ICS CG V+ + D E R+ +N S D R G L
Sbjct: 13 FCDYC-HASKFVTDQITGEIICSSCGFVISENAEDRGLERRLISNTS---DTARTGPGLT 68
Query: 65 PLLSGGGLSTVIA--------KPTAGGSTELLSGSLGKLQARS---SHPDRNLIQAFKSI 113
+ GL+T I KP + +T++ G L K +RS + ++NL A
Sbjct: 69 LKMHDKGLNTRIGVQNKDSVGKPLSAKTTQMF-GRLRKWDSRSQTKNSAEKNLRFALIEF 127
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
+ +LGL T+ +RA+ Y+K ++ +RGR ++I AACLY +CR RT+ E
Sbjct: 128 DKVQSKLGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTEI- 186
Query: 174 SVANGTTKKEIGRAKEFIVKHL 195
++ +KEI RA + + L
Sbjct: 187 AIQFVIKRKEIARAYRILFREL 208
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 14/205 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D G+T C+ECGLV++ +D EWR F + D R G P
Sbjct: 33 CPECG--GRLVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDRKK-RTGAPTTK 89
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLS+ I + LS + R + +RNL QA I
Sbjct: 90 LMHDEGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALGEIER 149
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M LG+ +++ A+ IY++ + L GR+ E + A LY A RQ PR+V++ +V
Sbjct: 150 MGSALGVPKDVRETASVIYRRALAEDLLPGRSIEGVSTAALYAAIRQMGLPRSVEDVAAV 209
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ E RA +I + L E+G
Sbjct: 210 TR-VDEMEFKRAYRYINQELGLEIG 233
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 4 SYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ R+T +A +TIC +CGLV++ +D EWR F + + R G P
Sbjct: 22 NQCPECEGRVT-----TNAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAP 72
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG-------------SLGKLQARSSHPDRNLIQA 109
L GLST I + T EL SG + G+ Q+++ +RNL
Sbjct: 73 LTAARHDRGLSTEIGRGTDANGNEL-SGQKRRRLTRMRREQTRGRFQSKA---ERNLAHG 128
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ +S L L TI+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+
Sbjct: 129 LSEVRRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 188
Query: 170 KEFCSVA 176
+ A
Sbjct: 189 DDITESA 195
>gi|15236883|ref|NP_192806.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|3600041|gb|AAC35529.1| contains similarity to transcription factor TFIIB repeat domains
(Pfam: transcript_fac2.hmm, score: 49.16) [Arabidopsis
thaliana]
gi|4539446|emb|CAB40034.1| putative protein [Arabidopsis thaliana]
gi|7267766|emb|CAB81169.1| putative protein [Arabidopsis thaliana]
gi|39545886|gb|AAR28006.1| TFIIB6 [Arabidopsis thaliana]
gi|332657516|gb|AEE82916.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 182
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 25/193 (12%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +CKR TE V ++ GDTIC ECG V+E +D+ G
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 46
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQ-AFKSISAMSDR 119
NP L G L T+I K + G + L+ L + Q + + ++I+ A+ I M++
Sbjct: 47 TNPNLKSGHLPTIIFKLS--GKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEA 104
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLR-GRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
LGL I + A +I K+ D+K LR G++ + AA + ACRQ N P+T+KE +VAN
Sbjct: 105 LGLTFGISNTACKILSKL-DKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN- 162
Query: 179 TTKKEIGRAKEFI 191
KEI +A + +
Sbjct: 163 VDMKEINKAVKLL 175
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 4 SYCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ R+T +A +TIC +CGLV++ +D EWR F + + R G P
Sbjct: 39 NQCPECEGRVT-----TNAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAP 89
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSG-------------SLGKLQARSSHPDRNLIQA 109
L GLST I + T EL SG + G+ Q S +RNL
Sbjct: 90 LTAARHDRGLSTEIGRGTDANGNEL-SGQKRRRLTRMRREQTRGRFQ---SKAERNLAHG 145
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
+ +S L L TI+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+
Sbjct: 146 LSEVRRISSALELSETIRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCNGRPRTL 205
Query: 170 KEFCSVA 176
+ A
Sbjct: 206 DDITESA 212
>gi|68073879|ref|XP_678854.1| transcription initiation factor [Plasmodium berghei strain ANKA]
gi|56499453|emb|CAH98814.1| transcription initiation factor TFIIB, putative [Plasmodium
berghei]
Length = 366
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN--ESSDHDPVRVG 60
++ C DCK ++ D S G IC+ CGLV+E + E EWR F+N +S +D RVG
Sbjct: 46 NNICPDCKEKGIIICDTSEGTQICNGCGLVVETNILSEEQEWRNFSNDGQSKGNDRNRVG 105
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
+ L ST K + + + K D+ L+ AF + + +
Sbjct: 106 ETSDIWLENNLTSTTFIKSSKKLQHLNMMTQINK-------NDQTLLSAFNILKLICETF 158
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + + +RA EI K+++D L+ R + A +Y+ACR+ +++KE +
Sbjct: 159 FLRSNVIERAKEITKELQDMDQLKNRANNLNMLAVVYLACREAGHIKSIKELITFDRSYK 218
Query: 181 KKEIGR----------AKEFI----VKHLEAEMGQSVEMGT--IHASDYLV 215
+K++G+ ++ F+ + HL + +++ T I A +Y+V
Sbjct: 219 EKDLGKTINKLKKVLPSRAFVYNENISHLIYSLSNRLQLSTDLIEAIEYVV 269
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ +V D G+T+C++CGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLVTDTEHGETVCTDCGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-ERNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ EF
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEFT 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++++ L+ E+
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELKLEI 238
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C+ + + G+ +C +CGL+LE ++D EWR F N S RVG P
Sbjct: 27 CPECESAS-LTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I LS L K Q R D RNL A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ ++ IY++ + +RGR+ EA+ A+ LY ACR+E PR+++E V
Sbjct: 145 MASALGVPRSVREVSSVIYRRALSEDLIRGRSIEAVAASALYAACRKEGIPRSLEEVTHV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
A +KEIGR +I + LE M
Sbjct: 205 AR-VEQKEIGRTYRYIARELELGM 227
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C CGL++E +D EWR F N + RVG P + GL+T I
Sbjct: 48 CEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQTMHDKGLTTTIDWKNKDAYG 106
Query: 86 ELLSGS-------LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS L K Q R D RNL A M+ LG+ ++++ A+ +Y+
Sbjct: 107 RSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDRMASALGVPRSVREVASVLYR 166
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ D+ +RGR+ E + + LY ACR E PR++ E +V+ + EIGR +I + L
Sbjct: 167 RALDEDLIRGRSIEGVATSTLYAACRMEGIPRSLDEVAAVSR-VNRMEIGRTYRYISQEL 225
Query: 196 EAEM 199
EM
Sbjct: 226 GLEM 229
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +TIC +CGLV++ +D EWR F + + R G PL GLST I +
Sbjct: 34 NAVETICEDCGLVIDEQRIDHGPEWRAFDEDERE----RTGAPLTAARHDRGLSTEIGRG 89
Query: 80 TAGGSTELLSG-------------SLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTI 126
T EL SG + G+ Q+++ +RNL + +S L L TI
Sbjct: 90 TDANGNEL-SGQKRRRLFRMRREQTRGRFQSKA---ERNLAHGLSEVRRVSSVLELSETI 145
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+D+A ++++ +++ L+GR+ EA+ AA +Y ACR +PRT+ + A
Sbjct: 146 RDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCNGRPRTLDDITESA 195
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 20/206 (9%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C +V D G+T+C +CGLV+E +D EWR F + S + RVG P
Sbjct: 24 DEACPECS--GHLVVDDERGETVCEDCGLVVETDEIDRGPEWRAF-DASEKDEKSRVGAP 80
Query: 63 LNPLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQA 109
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 81 TTNMMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDSK-ERNLKQA 137
Query: 110 FKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTV 169
I M+ LGL +++ A+ IY++ D+ L GR+ E + A +Y A RQ PR++
Sbjct: 138 LGEIDRMASALGLPENVRETASVIYRRALDENLLPGRSIEGVSTAAVYAAARQAGVPRSL 197
Query: 170 KEFCSVANGTTKKEIGRAKEFIVKHL 195
E V+ K EI R ++++ L
Sbjct: 198 DEINEVSR-VEKSEIARTYRYVIREL 222
>gi|448425111|ref|ZP_21582740.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
gi|445681371|gb|ELZ33805.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
Length = 279
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+ +C++CGLV+E ++D EWR F +E + P R G PL GLST I T
Sbjct: 7 ERVCTDCGLVVETDTLDRGPEWRSFDDEET---PARTGAPLTVARHDRGLSTEIGHKTDA 63
Query: 83 GSTELLSGSLGKL------QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
TEL +L QAR S DRNL + ++ LGL +++++A ++
Sbjct: 64 TGTELSGRKRAQLFRLRREQARGRFQSKADRNLAHGLSEVRRIASGLGLAESLRNQACQL 123
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++ + + LRGR+ E++ AA ++ ACR R + E +A T +
Sbjct: 124 FRSAQAENLLRGRSIESMAAASVFGACRCAGAARLLDEVGHLARVDTSR 172
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHD-PVRVGGPLN 64
C +C+ ++ D G+T+CSECGLV+E SVD EWR F +SS+ D RVG P
Sbjct: 39 CPECE--GNLITDTEHGETVCSECGLVVEQDSVDRGPEWRAF--DSSERDSKSRVGAPTT 94
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKSI 113
++ GLST I + LS + + R S +RNL QA I
Sbjct: 95 NMMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-ERNLKQALGEI 153
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ PR++ E
Sbjct: 154 DRMASALGLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQAGNPRSLDEIS 213
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
+V+ K E+ R ++++ L+ E+
Sbjct: 214 AVSR-VDKMELTRTYRYVIRELKLEI 238
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGL+LE +D +WR F ++ RVG P + GL+T I
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQEQ-QKKSRVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 86 ELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS L K Q R S +RNL A M+ LG+ ++++ A+ +Y+
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVREVASVLYR 164
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ ++ ++GR+ E + LY ACR E PR+++E V+ +KEIGR +I K L
Sbjct: 165 RALERDLIQGRSIEGVATGTLYAACRLEGMPRSLEEVAMVSR-VDRKEIGRTYRYIAKEL 223
Query: 196 E 196
E
Sbjct: 224 E 224
>gi|124505847|ref|XP_001351037.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
gi|23510680|emb|CAD49065.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
Length = 367
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN--ESSDHDPVRVG 60
++ C DCK ++ D S G IC+ CG+V+E+ + E EWR F N +S + D RVG
Sbjct: 47 NTTCPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVG 106
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
+ L ST K + + + K D+ LI AF + + D
Sbjct: 107 EVSDIWLENNLTSTTFIKSSKKLQHLNMMTQINK-------NDQTLISAFNILKLICDTF 159
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L + + +RA EI K+++D + L+ R + A +Y+ACR+ +++KE +
Sbjct: 160 FLRSNVIERAKEITKELQDMEQLKNRINNLNMLAVVYLACREAGHIKSIKELITFDRSYK 219
Query: 181 KKEIGRA 187
+K++G+
Sbjct: 220 EKDLGKT 226
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-KPTA 81
+T+C +CGLVL Y +D EWR+F+ + D R G PL P GLS+ I K A
Sbjct: 36 ETVCDDCGLVLSEYQIDHGPEWRLFS--ADDEGKKRTGAPLTPTRHDRGLSSEIGYKRDA 93
Query: 82 GGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G T LSG + AR S +RNL + ++ L L + +D+A
Sbjct: 94 NGRT--LSGKKRQQVARMRREQSRGRFQSKAERNLAHGLGEVRRIAGALELSESTRDQAC 151
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+++ + + LRGR+ EAI AA +Y CR RT++E +A ++ +
Sbjct: 152 RLFRSAQSEDLLRGRSIEAIAAASVYGICRCNRLMRTLEEIADLARVENQRVVN-----A 206
Query: 192 VKHLEAEMG 200
K L E+G
Sbjct: 207 YKTLNTELG 215
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 43 EWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA---KPTAGGSTEL-LSGSLGKLQA- 97
EWR F E + +D R G P + GLSTVI K +G + ++ + ++G+L+A
Sbjct: 12 EWRAFTGEEA-NDRSRTGIPSSLARHDMGLSTVIGRTDKDASGRAIDVAMRSTMGRLRAW 70
Query: 98 -----RSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIV 152
S DRNL QAF + + D+LG+ + ++ IY+K +++ +RGR A+V
Sbjct: 71 DFRTQAHSPTDRNLRQAFSELDRLKDKLGVSDAVIEKTAYIYRKAQERGLVRGRTISAMV 130
Query: 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196
A LYIACR+ RT+K+ + N +K++ R +V L+
Sbjct: 131 GAALYIACRETGASRTLKDIAEIGN-IKRKDLARIYRLVVMELD 173
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 22/207 (10%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+TIC +CGLVL ++D EWR F + D DP R G PL GLST I +
Sbjct: 23 ETICEDCGLVLAEDAIDRGPEWRSFDD---DTDPRRTGAPLTRSRHDRGLSTKIGYGSGS 79
Query: 83 GST--ELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
ST ++G + AR SS +RN + F I ++ L L + +++A
Sbjct: 80 DSTYSSRVTGRKRRQIARLRREHNRAQISSKAERNQVYGFTEIRRVNALLSLPESAREQA 139
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
++K + + +GR+ E AA +Y CR + PRT+ E +VA +T E+ A +
Sbjct: 140 CALFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITAVARAST-DELTTAYDA 198
Query: 191 IVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ + L + G I + YL +
Sbjct: 199 LNREL------GLPTGPIDPTQYLPRY 219
>gi|408403957|ref|YP_006861940.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364553|gb|AFU58283.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 322
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 7/199 (3%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C+ CK VV DH G+ ICS CG+V++ +WR F+ + + R G
Sbjct: 3 ASVVCSACKNEV-VVTDHECGEVICSRCGIVIDRVESPAVQDWRAFSVDEF-YRKSRTGA 60
Query: 62 PLNPLLSGGGLSTVIAKPTAGG-STELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
P + GL T I A G + + ++QA + DR+L QA + + + L
Sbjct: 61 PTSLARYNKGLLTSIGNSKANGLNFNRIRVWDFRIQAAN---DRSLKQALPELEHLKESL 117
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL I +++ Y+K ++GR +++AA +Y+ACR+ PRT+ E + +N
Sbjct: 118 GLPDAIVEKSAYFYRKASRLGLIKGRTVSSVLAASVYLACRELENPRTLSEIATASN-VA 176
Query: 181 KKEIGRAKEFIVKHLEAEM 199
+K+I R +V+ + ++
Sbjct: 177 RKKISRDYRMLVRMFDPKI 195
>gi|448301515|ref|ZP_21491508.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584251|gb|ELY38575.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 331
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 12/185 (6%)
Query: 26 CSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAGGST 85
C +CGLVLE +D EWR F D + RVG P + GLST I
Sbjct: 51 CEDCGLVLEEGRIDHGPEWRAFDAAEKD-EKSRVGAPTTNTMHDRGLSTNIGWQNKDAYG 109
Query: 86 ELLSG----SLGKLQARSSH------PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYK 135
LS + +L+ + DRNL QA I M+ LGL +++ A+ IY+
Sbjct: 110 RALSSRKRQQIQRLRTWNERFRTRDATDRNLKQALGEIDRMASALGLPENVRETASVIYR 169
Query: 136 KVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ ++ L GR+ E + A LY A RQ PR++ E +V+ E+ R+ ++V+ L
Sbjct: 170 RALEEDLLPGRSIEGMATAALYAAVRQAGLPRSIDELATVSR-VPYLEVARSYRYLVREL 228
Query: 196 EAEMG 200
+ M
Sbjct: 229 DLPMA 233
>gi|448734087|ref|ZP_21716315.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445800941|gb|EMA51287.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 268
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C+ + ++ G+ +C +CGL+LE ++D EWR F N + RVG P
Sbjct: 24 EQACPECESAS-LIKSADQGELVCEDCGLILENDNIDRGPEWRAF-NHAERQSKSRVGAP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKS 112
+ GL+T I LS L K Q R D RNL A
Sbjct: 82 TTQTMHDKGLTTQIGWQDKDAYGRSLSAEKRTQMNRLRKWQERVRTKDAGERNLQFALSE 141
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
M+ LG+ ++++ A+ IY++ +RGR+ EA+ A+ LY ACR+E PR+++E
Sbjct: 142 TDRMASALGVPRSVREVASVIYRRALSADLIRGRSIEAVAASALYAACRKEGIPRSLEEV 201
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
VA +KEIGR +I + LE M
Sbjct: 202 THVAR-VEQKEIGRTYRYIARELELGM 227
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 21/207 (10%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPV---RVGGP 62
C C + T +V D + + CS CG+V+E VD+ R FA+ PV G
Sbjct: 8 CPRCGKNT-LVTDVESSEVFCSNCGIVVEE-KVDDGRPERRFAD-----SPVIKSHTGDK 60
Query: 63 LNPLLSGGGLSTVIA---KPTAGG----STELLSGSLGKLQARS---SHPDRNLIQAFKS 112
+ GLST+I K + G S +L L K +RS + DRNL QA
Sbjct: 61 TSLTRHDRGLSTMINPFNKDSTGNPLSTSMKLSMTRLRKWDSRSRVKTSTDRNLQQALLE 120
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ M ++L L I ++A+ IY+K ++K +RGR+ ++VAA LY ACR+ PRT++E
Sbjct: 121 LLKMKEKLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTLREV 180
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
+ G +KEI I K L+ +M
Sbjct: 181 AATI-GIKRKEISATYRLIFKELDLKM 206
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C + +D G+ C++CGLVL+A +D EWR F ++ D RVG P+
Sbjct: 28 SECPEC--TGRIAYDEEHGERACADCGLVLDADGIDYGPEWRRFDDDGDDR--CRVGAPV 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKS 112
GLST I +SG + +++S +RNL QA
Sbjct: 84 TARKHDKGLSTTIGWQDEDAYGNRISGRKRRQLQRLRTWNERFTSKNSR-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++ A IY++ +++ L GR+ EA+ ACLY A RQ+ PRT+ F
Sbjct: 143 IERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLVAF 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
SV+ K + RA ++L +E+G +E
Sbjct: 203 ASVSR-VEKLPVQRA----YRYLSSELGLKIE 229
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 101/208 (48%), Gaps = 22/208 (10%)
Query: 6 CADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
C +C RLT D G+T+C+ECGLV+E +D EWR F + D RVG P
Sbjct: 43 CPECGGRLT---ADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQ-KSRVGAPTT 98
Query: 65 PLLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFK 111
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 99 NMMHDKGLSTNIGWQDKDAYGNS--LGSRQRQKMQRLRKWNERFRTRDSK-ERNLKQALG 155
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I M+ LGL +++ A+ IY++ D L GR+ E + A LY A +Q PR++ E
Sbjct: 156 EIDRMASALGLPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDE 215
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ K EI R ++V+ L E+
Sbjct: 216 VAGVSR-VEKSEIARTYRYVVRELGLEI 242
>gi|408404447|ref|YP_006862430.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365043|gb|AFU58773.1| putative transcription initiation factor IIB [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 313
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 13/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
CA C + +VFD + +CS CG+V++ EWR ++ E + R G P +
Sbjct: 21 CALCNSKS-IVFDSETSEAVCSSCGMVIKDNIESMGPEWRSYSGEDIESKS-RTGMPSSL 78
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS----------LGKLQARSSHPDRNLIQAFKSISA 115
GLST I+ + +S K+ + + RNL AF +S
Sbjct: 79 AFHDMGLSTFISYSNVDANGVAISAEQRSKVQRMRRWNKISSNNRSYHRNLKNAFAILST 138
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ D+L L T+ ++A Y+K D+K ++GR+ A++ A +Y ACR + PRT++E +
Sbjct: 139 IKDKLSLSDTLIEKAAYNYRKALDKKIIKGRSIRALIVAAVYAACRDLSVPRTLEEISAA 198
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
AN T G+ +V++L+ +
Sbjct: 199 AN-TDAIFAGKCYRLLVQNLDLRL 221
>gi|383625085|ref|ZP_09949491.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448697538|ref|ZP_21698578.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445781491|gb|EMA32347.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 327
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 93/205 (45%), Gaps = 15/205 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D S G+ +C ECGLV++A +D EWR F +E RVG P+
Sbjct: 29 CPECS--GRLRHDVSHGEHVCVECGLVVDADEIDHGPEWRSFDDEGDAR--TRVGAPITE 84
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQARSSHPD---RNLIQAFKSISA 115
GLST I LS S L R + D RNL AF +
Sbjct: 85 RRHDKGLSTTIGWEDRDAYGNDLSASKRTRLRRLRTWNERFTSKDARERNLKHAFGELER 144
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ ++ L GR+ EA+ A LY A RQ PRT F SV
Sbjct: 145 MASALGLPDPCRETAAVIYRRAVEEDLLPGRSIEAMATASLYAAARQHGTPRTFVAFDSV 204
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMG 200
+ + + RA ++ L+ E+
Sbjct: 205 SR-VDDQPVKRAYRYLSGELDLEIA 228
>gi|448418768|ref|ZP_21579945.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
gi|445676162|gb|ELZ28686.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
Length = 321
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +T+C +CGLV+ +D EWR F +++S+ + R G PL GLST I +
Sbjct: 37 NAVETVCEDCGLVIADQQIDHGPEWRSFEDDNSNRE--RTGAPLTAARHDRGLSTTIGRR 94
Query: 80 TAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
T G LSGS L + Q R S +RNL + ++ LGL ++I+D+
Sbjct: 95 T-DGKGRTLSGSKRCQLARLRREQTRGRFQSKAERNLAHGLGEVRRVASALGLASSIRDQ 153
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
A ++++ + + L GR+ EA+ AA +Y CR +P + +A
Sbjct: 154 ACQLFRSAQREDLLLGRSIEAMAAASVYGVCRCHGRPLARDDLVDIA 200
>gi|298707695|emb|CBJ26012.1| transcription initiation factor IIB [Ectocarpus siliculosus]
Length = 317
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD--HDPVRVGGP 62
+C +C +++ D AG+ IC C +V+ +D+ +EW+ +A +S++ DP R G
Sbjct: 10 FCKECMAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCGDA 69
Query: 63 LNPLLSG-GGLSTVIAKPTAGGSTELLSGSLGKLQA---RSSHPDRNL-IQAFKSISAMS 117
+PLLS G++T+I GG L+ L KLQ + S +R L + F +
Sbjct: 70 ASPLLSAKSGMNTLI----EGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFG 125
Query: 118 DRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI---ACRQENKPRTVKEFCS 174
+RLGL +++ A + +K ED + + E VA C+ + CRQ + +T+KE +
Sbjct: 126 NRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMST 185
Query: 175 VANGTTK 181
+ N + K
Sbjct: 186 MFNVSLK 192
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
S C +C + +D G+ C++CGLVL+A +D EWR F ++ D RVG P+
Sbjct: 28 SECPEC--TGRIAYDEEHGERACADCGLVLDADGIDYGPEWRRFDDDGDDR--CRVGAPV 83
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLG-----------KLQARSSHPDRNLIQAFKS 112
GLST I +SG + ++++ +RNL QA
Sbjct: 84 TARKHDKGLSTTIGWQDEDAYGNRISGRKRRQLQRLRTWNERFTSKNAR-ERNLKQALGE 142
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL ++ A IY++ +++ L GR+ EA+ ACLY A RQ+ PRT+ F
Sbjct: 143 IERMASALGLPEPCRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQGTPRTLVAF 202
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMGQSVE 204
SV+ K I RA ++L +E+G +E
Sbjct: 203 ASVSR-VEKLPIQRA----YRYLSSELGLKIE 229
>gi|448564338|ref|ZP_21636019.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445716889|gb|ELZ68619.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 312
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 20/189 (10%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-KPTA 81
+T+C ECGL+++ Y +D EWRI E + R G PL P GLS+ I K A
Sbjct: 36 ETLCEECGLIIDEYQIDHGPEWRI--TERDEESRRRTGAPLTPTRHDRGLSSEIGYKRDA 93
Query: 82 GGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
G T LSG + AR S +RNL + ++ LG +I+D+A
Sbjct: 94 SGRT--LSGKKRQQVARMRREQSRGRFQSKAERNLALGLGEVRRIAGALGFSDSIRDQAC 151
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+++ +++ LRGR+ E+I AA +Y CR RT++E +A ++ +
Sbjct: 152 RLFRSAQNEDLLRGRSVESIAAASIYGICRCNGLLRTLEEVADLARVENQRVVN-----A 206
Query: 192 VKHLEAEMG 200
K L E+G
Sbjct: 207 YKTLNTELG 215
>gi|448366610|ref|ZP_21554733.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
gi|445654065|gb|ELZ06921.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
aegyptia DSM 13077]
Length = 303
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +T+C +CGLVL +D EWR FA++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTKI--- 74
Query: 80 TAGGSTELLSGSLGKLQAR-----------------SSHPDRNLIQAFKSISAMSDRLGL 122
G T+ +S ++ R S+ + N + F I ++ RL L
Sbjct: 75 --GYGTDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSL 132
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
++++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+
Sbjct: 133 PDCLREQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEA 191
Query: 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
E+ A + + + L + G I YL F N+
Sbjct: 192 ELKAAYDALNRDL------GLPTGPIDPGQYLPRFASNL 224
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
+ C +C +V D G+T+C+ECGLV++ +D EWR F + + ++ R G P
Sbjct: 31 EQVCPECG--GRLVSDTEHGETVCNECGLVVDENEIDHGPEWRAF-DAAERNEKKRTGAP 87
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLS+ I LS + R + +RNL QA
Sbjct: 88 TTKMMHDKGLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALGE 147
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LG+ +++ A+ IY++ + L GR+ E + A LY RQ PR+V+E
Sbjct: 148 IDRMASALGVPKDVRETASVIYRRALAENLLPGRSIEGMSTAALYAGIRQMGLPRSVEEV 207
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+V+ + E RA +I + L+ ++
Sbjct: 208 GAVSR-VDEMEFKRAYRYINQELDLQIA 234
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D + G+T+CS+CGLV++ S+D EWR F + D RVG P
Sbjct: 51 CPECS--GNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLST I LS + R +RNL QA I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + E+ R ++V+ L+ E+
Sbjct: 228 SR-VDRMELTRTYRYVVRELKLEI 250
>gi|257387108|ref|YP_003176881.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257169415|gb|ACV47174.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 286
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D SA + +C++CGLV++ +D EWR F E R G PL
Sbjct: 8 CPEC----DGAIDASAREAVCTQCGLVVDEDQLDRGPEWRSF--EDDGEQKARTGAPLTR 61
Query: 66 LLSGGGLSTVIAKPTA-GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLG 121
GLST I + T G L + +R+ S DRN F I + RL
Sbjct: 62 SRHDRGLSTEIGRSTRLKGRKRRQMARLRREHSRAQTGSKRDRNQRIGFIEIRRLVSRLD 121
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +TI+DRA +++ ++ L GR+ E AA +Y CR RTV+E + A +T
Sbjct: 122 LSSTIRDRACVLFESAQEADLLVGRSIEGFAAAAVYATCRTSEIARTVEEVAADAQAST- 180
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
E+ A + I + L + G I +YL F
Sbjct: 181 GELRVAYDAINREL------GLPTGPIDPREYLPRF 210
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 12/167 (7%)
Query: 43 EWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKL 95
EWR F +E D RVG P+ + GLST+I K G + + L K
Sbjct: 4 EWRAFDHEQRDKR-TRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKW 62
Query: 96 QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIV 152
Q + S +RNL A + S RLGL ++++ A+ IY+ + K +RGR+ E +V
Sbjct: 63 QRKIRISGATERNLAFALSELDRDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVV 122
Query: 153 AACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM 199
AA LY ACRQ PRT+ E V+ +KKE+GR F+ + L ++
Sbjct: 123 AASLYAACRQCKVPRTLDEIAEVSR-VSKKEVGRTYRFLTRELHIKL 168
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V D + C++CG+V+ VD EWR + E + VR G P++
Sbjct: 8 CLECGS-KSIVTDPKHAELYCADCGMVITENLVDLGPEWRSYDAEQASKR-VRTGPPMSY 65
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+ GLST PT G T S L L A S+ +++L A I M+ L L
Sbjct: 66 RVHNKGLST----PTPGSLTR--SKRLRGLIAMDSN-EKSLSFALGEIDRMACALNLPRD 118
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ + +Y+K + ++GR+ E + +A LYI CRQ PRT+KE +V+ KK I
Sbjct: 119 LRETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKEIAAVSRMPLKK-IR 177
Query: 186 RAKEFIVKHLEAEMG 200
RA F++ LE ++
Sbjct: 178 RAYIFLLHKLEIKLA 192
>gi|448407123|ref|ZP_21573550.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445676336|gb|ELZ28859.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 288
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+T+C+ CGLV+ ++D EWR F ++ ++ + R G PL GLST I + T
Sbjct: 21 ETVCASCGLVVAEDNIDHGPEWRSFEDDETNRE--RTGAPLTRSRHDRGLSTEIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G + + R+ S +RN + F I + LGL I+DRA +++ +
Sbjct: 79 KGRKRRRMARMRRQHNRTKIGSKAERNQVYGFTEIRRLVSALGLSDHIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
D+ LRGR+ E AA +Y CR RT+ E + A +K E+ A + + + L
Sbjct: 139 DEDLLRGRSLEGFAAATVYATCRTAEVSRTIDEVVADARA-SKAELSAAYDALNRDL--- 194
Query: 199 MGQSVEMGTIHASDYLVIFLLNI 221
+ G I ++YL F ++
Sbjct: 195 ---GLPTGPIDPAEYLARFASDL 214
>gi|448363880|ref|ZP_21552475.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445645464|gb|ELY98468.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 303
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-- 77
+A +T+C +CGLVL +D EWR FA++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFADD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ + ++G + +R S+ + N + F I ++ RL L ++
Sbjct: 78 SDSVSDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYASCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+ + + L + G I YL F N+
Sbjct: 197 YDALNRDL------GLPTGPIDPGQYLPRFASNL 224
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 11/185 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGLS 73
VV D + GD +C CGL+L++ ++D + +WR F +S ++ + G P+ PL G GL
Sbjct: 51 VVEDPNTGDLVCQNCGLILDSSALDFSKDWRAF--DSDEYIERAHAGAPITPLRPGFGLD 108
Query: 74 T--VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQ-AFKSISAMSDRLGLVTTIKDRA 130
T V+ K + S LL + Q ++ I+ A + I +D L L + A
Sbjct: 109 TDIVLTKGASKKSVNLLK----RAQKHAADSKEKTIEPALRKIRDAADSLVLPQETIEDA 164
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190
+Y+ ++GR+ +A+VAA +Y ACR+ + P+T++E +KEIGR+ F
Sbjct: 165 ATLYRMAARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLEEISKFF-ALEEKEIGRSFRF 223
Query: 191 IVKHL 195
+ + L
Sbjct: 224 LFRKL 228
>gi|324514940|gb|ADY46036.1| Transcription initiation factor IIB [Ascaris suum]
Length = 202
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK 165
+ +A I MS R+ L +I+D A ++++ V D + L G+N EA AACLYIACR+E
Sbjct: 1 MTEALGVIREMSARMQLPKSIEDSAAKVFRDVVDTRALVGKNNEAKAAACLYIACRKEGV 60
Query: 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
PRT KE C+V+ +KKEIGR + ++ LE + Q I ++D++ F N+
Sbjct: 61 PRTFKEVCAVSR-VSKKEIGRCFKLAIRSLETNLEQ------ITSADFMSRFCGNL 109
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 90 GSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQE 149
G KL RS + I + +S LGL ++ A I KK ++ + GR+
Sbjct: 79 GRCFKLAIRSLETNLEQITSADFMSRFCGNLGLSHALQMVATTIAKKAVERDLVAGRSPI 138
Query: 150 AIVAACLYIACRQENKPRTVKEFCSVANG 178
+I AA +Y+A + N+ RT KE ++A
Sbjct: 139 SIAAAAIYMASQASNERRTAKEIGAIAGA 167
>gi|448340111|ref|ZP_21529093.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445631166|gb|ELY84406.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +T+C +CGLV++ + +D EWR F + + R G PL GLST I +
Sbjct: 34 NAVETVCEDCGLVVDEHQIDHGPEWRGFDADERE----RTGAPLTATRHDRGLSTEIGRG 89
Query: 80 TAGGSTELLSGSLGKL------QAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRA 130
EL +L Q+R S +RNL + + RL L +I+D+A
Sbjct: 90 ADANGNELSGQKRQRLARMRREQSRGRFQSKAERNLAHGLSEVRRIVSRLELSESIRDQA 149
Query: 131 NEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
++++ + + LRGR+ EA+ AA +Y ACR +P+T+ + A
Sbjct: 150 CQLFRSAQTEDLLRGRSIEAMAAASVYGACRCNGRPQTLDDVTDSA 195
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D + G+T+CS+CGLV++ S+D EWR F + D RVG P
Sbjct: 51 CPECS--GNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLST I LS + R +RNL QA I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ D+ L GR+ E + A LY A RQ PR++ E V
Sbjct: 168 MASALGLPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDEIERV 227
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ + E+ R ++V+ L+ E+
Sbjct: 228 SR-VDRMELTRTYRYVVRELKLEI 250
>gi|326427942|gb|EGD73512.1| hypothetical protein PTSG_05216 [Salpingoeca sp. ATCC 50818]
Length = 370
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN---ESSDHDPVRVGGPLNPLLSGGG 71
VV D+ AGD +CSECGLV+ VD SEWR F N + + D RVG + LL G
Sbjct: 33 VVEDYRAGDMVCSECGLVVGDRVVDVGSEWRSFGNSDKKKDNKDRSRVGLEEDVLLEGDQ 92
Query: 72 LSTVIAKPTAGGSTELLSGSLGKLQAR--SSHPDRNLIQAFKSISAMSDRLGLVTTIKDR 129
T+ A P + + Q+R S R L + I+ ++ +L L +
Sbjct: 93 GLTISAIPNCPNA----DVPWMRWQSRMGPSGSTRTLKSVYGKIANLASKLSLTDQVVTT 148
Query: 130 ANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
A I+K+VE+ ++ R+ ++ AA +YIACR R KE C A+ T KEIGR
Sbjct: 149 AKAIFKEVEETGAVKTRSHDSCAAASVYIACRNLGVSRPYKEICRAAD-KTPKEIGR 204
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+T+C +CGLV++ S+D EWR F + D + RVG P
Sbjct: 35 CPECS--GSLATDTEHGETVCQDCGLVVDEDSIDRGPEWRAFDSREKD-EKSRVGAPTTN 91
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
++ GLST I LS S + R +RNL QA I
Sbjct: 92 MMHDKGLSTNIGWQDKDAYGNQLSASQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A+ IY++ + L GR+ E + A LY A R+ PR++ E +V
Sbjct: 152 MASALGLPESVRETASVIYRRALGEDLLPGRSIEGVSTAALYAAARKAGTPRSLDEISAV 211
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ K EI R ++V+ L+ E+
Sbjct: 212 SR-VEKDEIARTYRYVVRELKLEI 234
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + V + +TICS CGLV+ +D EWR F N + RVG P
Sbjct: 79 CPECG--GDTVASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 135
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISA 115
L+ GLST I + +S + R DRNL A I
Sbjct: 136 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 195
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
MS LG+ T ++ A+ IY++ D L GR+ E + A LY A R + R++ E SV
Sbjct: 196 MSSALGIHETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELASV 255
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEM 199
+ EI R +I++ L+ ++
Sbjct: 256 SR-VPALEIKRTYRYIIRELDLQI 278
>gi|448683556|ref|ZP_21692273.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445783695|gb|EMA34520.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 286
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++CS CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCSSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMALSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NENLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQAELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLVIF 217
+ G I +Y+ F
Sbjct: 195 ---GLPTGPIDPREYVPRF 210
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA + + +D+ + GRN + AACLY A +++N T E A+ T
Sbjct: 214 LDLPTAVRQRAERLVDEAQDRGLVSGRNPAGVAAACLYTAAQEQNVALTQVEAAETADVT 273
>gi|448356416|ref|ZP_21545149.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445653449|gb|ELZ06320.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 399
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 25/226 (11%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
++C +C + + +TIC ECG +++ +D EWR F ++ +D R G PL
Sbjct: 8 THCPEC----DGILRERETETICEECGAIVDTDLIDRGPEWRSFVDDPTDR--RRTGAPL 61
Query: 64 NPLLSGGGLSTVIAKPTAG--GSTELLSG----SLGKLQAR------SSHPDRNLIQAFK 111
GLST+I + + ++G L +LQ ++ + N I+AF
Sbjct: 62 TRSRHDRGLSTMIGYGSGSQFDQSTRITGRKRRQLTRLQREHTRSQIATKAEYNQIRAFN 121
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
I + RL L I ++A ++ + + L+GR+ E AA +Y CR N PRT+ E
Sbjct: 122 EIRCIVARLSLTDPITEQACALFDNAQSENLLQGRSLEGFAAAVVYAICRTHNLPRTIDE 181
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+VA+ + E+ A + + L +E G I +DYL F
Sbjct: 182 IVTVASA-DEAELKAAYTALNREL------GLETGPIDPTDYLPRF 220
>gi|448401815|ref|ZP_21571809.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445666063|gb|ELZ18733.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 297
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+ +C ECGLV +D EWR F E D DP R G PL GLST I +
Sbjct: 23 EIVCEECGLVSAEDEIDRGPEWRSF--EDDDSDPRRTGAPLTRSRHDRGLSTEIGYGSHA 80
Query: 83 GSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
G++ L+G + AR SS +RN + F I ++ L L ++++++
Sbjct: 81 GTSSRLTGRKRRQIARLRREHNRARISSKAERNQVYGFAEIRRLTALLSLPESVREQSCA 140
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
+++ + + +GR+ E AA +Y CR + RT+ E +VA E+ A + +
Sbjct: 141 LFESAQSEGLFQGRSLEGFAAAAIYATCRTRSIARTIDEITAVARADN-AELSAAYDAMN 199
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIF 217
+ L + G I + YL F
Sbjct: 200 REL------GLRTGPIDPAQYLPRF 218
>gi|448318490|ref|ZP_21508011.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445599034|gb|ELY53079.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 444
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 30 CPECG--GRLISDTEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTTN 86
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+ S + L + + R S +RNL QA I M+ LGL
Sbjct: 87 MXS-----------RQRQKMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPEN 134
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+++ A+ IY++ ++ L GR+ E + + LY A RQ PR++ E +V+ K E+
Sbjct: 135 VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAVSR-VEKMELT 193
Query: 186 RAKEFIVKHLEAEM 199
R +I++ L E+
Sbjct: 194 RTYRYIIRELGLEV 207
>gi|408405841|ref|YP_006863824.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366437|gb|AFU60167.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 297
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C D +++T+V +G+ IC++CG V+ +E +W + A E +R P +
Sbjct: 13 CGDGQKVTDV----ESGELICTKCGFVIRERVGNEEEDWSVLAREPGSK--LRTS-PTSL 65
Query: 66 LLSGGGLSTVIAKP--TAG-GSTELLSGSLGKLQAR----SSHPDRNLIQAFKSISAMSD 118
SG GLST+I +P +AG G + + +L+A +R+L +AF + +
Sbjct: 66 ARSGMGLSTIIGRPDMSAGSGLNAAMRSTFDRLRAWDFRIKGQDERSLRRAFVELDRLRS 125
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
LGL I ++ IY++ +++ +RGR A++ A +YI R+ T+++ + N
Sbjct: 126 ALGLSDAIVEKTAYIYRRAQERGLVRGRTMRAVLGAAIYIVQREMGVSGTLQDIINATN- 184
Query: 179 TTKKEIGRAKEFIVKHLE 196
TT+K++ RA +++ L+
Sbjct: 185 TTEKDLARAYRILLRELD 202
>gi|399578474|ref|ZP_10772221.1| transcription initiation factor TFB [Halogranum salarium B-1]
gi|399236360|gb|EJN57297.1| transcription initiation factor TFB [Halogranum salarium B-1]
Length = 318
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
+A +T+C +CGLV+ +D EWR F ++ S+ + R G PL GLST I +
Sbjct: 34 NAVETVCEDCGLVIADQQIDHGPEWRSFEHDDSNRE--RTGAPLTAARHDRGLSTTIGRS 91
Query: 80 TAG-GSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKD 128
T G GST LSG+ + AR S +RNL + ++ LGL ++++
Sbjct: 92 TDGKGST--LSGAKRRQLARMRREHSRSRFQSKAERNLAHGLGEVRRITSALGLGGSVRN 149
Query: 129 RANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+A ++++ + + L GR+ EAI AA +Y CR +P + VA
Sbjct: 150 QACQLFRSAQREDLLLGRSIEAIAAASVYGICRCHGRPVARDDLVDVA 197
>gi|408403850|ref|YP_006861833.1| transcription initiation factor TFB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364446|gb|AFU58176.1| transcription initiation factor TFB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 366
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 10/191 (5%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++ D G+ +CS CG+V +++ +E R F E D R G P + ++ GLS
Sbjct: 19 QLISDPDTGEEVCSSCGVVARE-NLELAAERRAFTLEEMDKR-YRTGEPASLMMYDMGLS 76
Query: 74 TVIAKPTAGGSTELLSG--------SLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+ I + + + G L K+ ++ +NL +A + I +++ LG+ T
Sbjct: 77 SFIDNKNIDANGKQIQGYTEIDRLRRLNKITVSNNSKTKNLNKAMREIRRITEILGIGTP 136
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
+ +RA IY+K +++ ++GR+ IVAA +YIAC+ PR++ E V +K I
Sbjct: 137 VAERAAYIYRKALEKELIKGRSITGIVAATIYIACKDTGTPRSIHEIQEVIGNADRKNIS 196
Query: 186 RAKEFIVKHLE 196
+F+++ ++
Sbjct: 197 YYYKFLLREMK 207
>gi|91806596|gb|ABE66025.1| transcription factor IIB family protein [Arabidopsis thaliana]
Length = 362
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 117/285 (41%), Gaps = 81/285 (28%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C CK++ VV DH T C CGL + + + S +++D VR+ P N
Sbjct: 9 CRRCKQI-NVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLSGGGLSTVIAK-----------------------PTAGGSTELLSGS----------- 91
LLS LS V + P + + +L++GS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 92 ----------------LGKLQA--------RSSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
LG LQ S+ P++ L + SI A+S+ L L TIK
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKAL--SIVSIEAISNGLKLPATIK 178
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ANEI+K VE RG+ + + AAC+YIACR + RT++E AN + +I
Sbjct: 179 GQANEIFKVVESYA--RGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISET 236
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLD 232
FI + LE I+ + Y+ I N K F +F LD
Sbjct: 237 VGFIAEKLE-----------INKNWYMSIETANFIKRFCSIFRLD 270
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 111/197 (56%), Gaps = 13/197 (6%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH-DPVRVGGPLNPLLSGGGLST 74
V D +AG+ ICS+CG+VLE +VD ++ + F E D+ + R G P +S S+
Sbjct: 33 VTDVNAGEIICSDCGIVLEERAVDRNNDSKTFTKE--DYLNTARNGPPTKISISDMSSSS 90
Query: 75 VIAKPTAGG-STELLSGSLGKL--------QARSSHPDRNLIQAFKSISAMSDRLGLVTT 125
+I+K ++ S ++ +++S++ ++NL++AF + A S++L +
Sbjct: 91 IISKKNFDAVGKKMHSNNIRHFSRMRFWDSRSKSNNKEQNLVKAFTVLDAYSNKLNMPEN 150
Query: 126 IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185
K+ A IY+K D+K +RG + +++AA +Y +C+Q PR+V E + N +K++
Sbjct: 151 AKEHAAYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSVDEISKITN-INRKKLL 209
Query: 186 RAKEFIVKHLEAEMGQS 202
R+ + +VK LE ++ +
Sbjct: 210 RSYKRLVKKLEIKVDST 226
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 46/232 (19%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
+C +C +V D +T+C +CGLV+E +D EWR F D + RVG P
Sbjct: 29 HCPECG--GRLVSDTEHAETVCDDCGLVVEEDEIDRGPEWRAFDAAEKD-EKSRVGAPTT 85
Query: 65 PLLSGGGLSTVIA-------------------------------KPTAGGSTELLSGSLG 93
++ GLST I + + + L S
Sbjct: 86 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLXLSSRQRQ 145
Query: 94 KLQ----------ARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPL 143
K+Q R S +RNL QA I M+ LGL +++ A+ IY++ ++ L
Sbjct: 146 KMQRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPENVRETASVIYRRALEEDLL 204
Query: 144 RGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
GR+ E + A LY A RQ PR++ E +V+ K E+ R ++++ L
Sbjct: 205 PGRSIEGVATASLYAAARQAGTPRSLDEISAVSR-VDKMELTRTYRYVIREL 255
>gi|116831306|gb|ABK28606.1| unknown [Arabidopsis thaliana]
Length = 363
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 117/285 (41%), Gaps = 81/285 (28%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C CK++ VV DH T C CGL + + + S +++D VR+ P N
Sbjct: 9 CRRCKQI-NVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLSGGGLSTVIAK-----------------------PTAGGSTELLSGS----------- 91
LLS LS V + P + + +L++GS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 92 ----------------LGKLQA--------RSSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
LG LQ S+ P++ L + SI A+S+ L L TIK
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKAL--SIVSIEAISNGLKLPATIK 178
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ANEI+K VE RG+ + + AAC+YIACR + RT++E AN + +I
Sbjct: 179 GQANEIFKVVESYA--RGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISET 236
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLD 232
FI + LE I+ + Y+ I N K F +F LD
Sbjct: 237 VGFIAEKLE-----------INKNWYMSIETANFIKRFCSIFRLD 270
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKP 79
S +TIC +CGLVL ++D EWR F ++ +D P R G PL GLST I
Sbjct: 17 SGTETICEDCGLVLAEDAIDRGPEWRSFDDDETD--PRRTGAPLTRSRHDRGLSTEIGY- 73
Query: 80 TAGGSTELLSGSLGKLQAR-------------SSHPDRNLIQAFKSISAMSDRLGLVTTI 126
+G +E S G+ + + SS +RN + F I ++ L L +
Sbjct: 74 GSGTPSEYRSRITGRKRRQIARLRREHNRARISSKAERNQVYGFTEIRRINTGLSLPDSA 133
Query: 127 KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186
+++A ++K + + +GR+ E AA +Y CR + PRT+ E +VA + E+
Sbjct: 134 REQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNPRTIDEITTVARA-DRHELTA 192
Query: 187 AKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
A + + + L + G I + YL +
Sbjct: 193 AYDALNREL------GLPTGPIDPTGYLPRY 217
>gi|15230282|ref|NP_191296.1| cyclin family protein [Arabidopsis thaliana]
gi|6735316|emb|CAB68143.1| putative protein [Arabidopsis thaliana]
gi|39545882|gb|AAR28004.1| TFIIB4 [Arabidopsis thaliana]
gi|332646126|gb|AEE79647.1| cyclin family protein [Arabidopsis thaliana]
Length = 360
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 117/285 (41%), Gaps = 81/285 (28%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C CK++ VV DH T C CGL + + + S +++D VR+ P N
Sbjct: 9 CRRCKQI-NVVTDHVTRRTRCFGCGLEFKYRPIGDLSP-------VAENDTVRLPDPTNT 60
Query: 66 LLSGGGLSTVIAK-----------------------PTAGGSTELLSGS----------- 91
LLS LS V + P + + +L++GS
Sbjct: 61 LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 120
Query: 92 ----------------LGKLQA--------RSSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
LG LQ S+ P++ L + SI A+S+ L L TIK
Sbjct: 121 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKAL--SIVSIEAISNGLKLPATIK 178
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ANEI+K VE RG+ + + AAC+YIACR + RT++E AN + +I
Sbjct: 179 GQANEIFKVVESYA--RGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISET 236
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLD 232
FI + LE I+ + Y+ I N K F +F LD
Sbjct: 237 VGFIAEKLE-----------INKNWYMSIETANFIKRFCSIFRLD 270
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 22 GDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA 81
GD I E GLV+E ++D EWR F D RVG P P + GL+T I
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAFDQSERDQ-KSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 82 GGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
+ LS K R + +RNL A I M LG +++ A+
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALGAPDNVQEMAS 164
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
IY++ D+ +RGR+ E + L+ A R E PRT++E VA +GRA
Sbjct: 165 VIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIPRTLEEVSDVAR-VDHNRVGRA---- 219
Query: 192 VKHLEAEMGQSV 203
+HL E+G V
Sbjct: 220 YRHLSQELGLEV 231
>gi|448350949|ref|ZP_21539759.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445635137|gb|ELY88308.1| Zinc finger TFIIB-type domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 303
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 20 SAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIA-- 77
+A +T+C +CGLVL +D EWR F ++ D D R G PL GLST I
Sbjct: 20 TATETVCEDCGLVLGEDPIDRGPEWRSFVDD--DTDRRRTGAPLTRSRHDRGLSTQIGYG 77
Query: 78 KPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
+ + ++G + +R S+ + N + F I ++ RL L ++
Sbjct: 78 SDSVPDRSTRITGRKRRQLSRLRREHTRATISTKAEYNQVLGFTEIKRITARLSLPDCLR 137
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
++A ++ + + L+GR+ E AAC+Y +CR + PRT+ E ++A T+ E+ A
Sbjct: 138 EQACALFDSAQSENLLQGRSIEGFAAACVYTSCRVRSLPRTIDEVVTIA-AATEAELKAA 196
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+ + + L + G I YL F N+
Sbjct: 197 YDALNRDL------GLPTGPIDPGQYLPRFASNL 224
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 14/201 (6%)
Query: 5 YCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLN 64
YC +C +V D +T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 28 YCPECG--GRLVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 84
Query: 65 PLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKSIS 114
++ GLST I + LS + R +RNL QA I
Sbjct: 85 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 115 AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174
M+ LGL +++ A+ IY++ ++ L GR+ E + A LY A RQ PR++ E +
Sbjct: 145 RMASALGLPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEISA 204
Query: 175 VANGTTKKEIGRAKEFIVKHL 195
V+ K E+ R ++++ L
Sbjct: 205 VSR-VEKMELTRTYRYVIREL 224
>gi|344210357|ref|YP_004794677.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343781712|gb|AEM55689.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 286
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTA- 81
+++C CGLV+ ++D EWR F ++ +D R G PL GLST I + T
Sbjct: 21 ESVCGSCGLVVGEDAIDPGPEWRSFDDDDTDR--ARTGAPLTRSRHDRGLSTKIGRSTRL 78
Query: 82 GGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVE 138
G L + R SS +RN + AF I + + L I+DRA +++ +
Sbjct: 79 KGRKRRQFARLRREHNRAQISSKRERNKVYAFTEIRRIISSMSLSDAIRDRACVLFESAQ 138
Query: 139 DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198
++ L+GR E AA +Y CR E RTV E C+VA T+ E+ A + + + L
Sbjct: 139 NEDLLQGRTLEGFAAAAIYATCRTEGVARTVDELCTVAKA-TQSELRAAYDALNREL--- 194
Query: 199 MGQSVEMGTIHASDYLVIFLLNI 221
+ G I +Y+ F +
Sbjct: 195 ---GLPTGPIDPREYVPRFATTL 214
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
L L T ++ RA ++ + +D+ + GRN + AACLY A ++ + T E A+ T
Sbjct: 214 LDLPTAVRQRAEQLVDEAQDRGLVSGRNPAGVAAACLYTAAQERDVALTQAEAAETADVT 273
>gi|257052770|ref|YP_003130603.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691533|gb|ACV11870.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 307
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 23 DTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLSTVIAKPTAG 82
+T+C +CGL+L +D EWR F ++ ++ P R G PL P G+ST I + T G
Sbjct: 36 ETVCEDCGLILHEEPIDHGPEWRSFEDDRTN--PERTGAPLTPTRHDRGISTEIGRKTDG 93
Query: 83 GSTELLSGS----LGKLQ-----AR-SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
+L SGS LG+ + AR S +RNL +S + L I D+A +
Sbjct: 94 KGNDL-SGSKRRQLGRFRREHSRARFRSKSERNLAHGLSEVSRIVSALDASDVIDDQACD 152
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+++ + + GR+ EA+ A +Y ACR P T E +V+
Sbjct: 153 LFRSAQGEDLFHGRSIEAMAAGSVYAACRCNRLPWTFDEVSAVS 196
>gi|429190461|ref|YP_007176139.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134679|gb|AFZ71690.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 333
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + D G+ +CS+CGLV +D EWR F + + RVG P+
Sbjct: 40 CPECN--GRIRPDDDRGERVCSDCGLVSGGDEIDYGPEWRSFDEDGNSRG--RVGAPITQ 95
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG----SLGKLQA------RSSHPDRNLIQAFKSISA 115
GLST I LS L +L+ ++ +RNL QA +
Sbjct: 96 RRHDKGLSTTIGWEDRDAYGNELSARKRSKLNRLRTWNERFTSTNSQERNLKQALGELER 155
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++ A IY++ D L GR+ EA+ A LY A RQ PRT F SV
Sbjct: 156 MASALGLPEPCRETAAIIYRQAVDADLLLGRSIEAVATASLYAAARQHGTPRTFSTFESV 215
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ + I RA + L +++G +EM YL F
Sbjct: 216 SR-VDEPPIKRA----YRQLSSDLG--LEMAPPDPDHYLRQF 250
>gi|429327311|gb|AFZ79071.1| transcription initiation factor iib, putative [Babesia equi]
Length = 309
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES---SDHDPVRVGGP 62
C +C +EV+ D G +CS CGLVLE + E EWR F ES + + RVG
Sbjct: 18 CRNCGDASEVLTDDVEGIRLCSGCGLVLEDKLISEQQEWRNFNTESLGAAHAEKSRVGEF 77
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGL 122
+ L G ST GGS ++ L L DR L A+ + + D L +
Sbjct: 78 NDVWLDDVGNSTTFI----GGSKKM--QQLQSLMGNYDSSDRILRNAYSLLRGVGDSLDI 131
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+ +R EI K + + L+GR + A +Y+ CR+ R+++E C + +
Sbjct: 132 KDHVTERCKEILKDMHEASILKGRCTILNILAIIYLGCRECGISRSLRELCIYDRNISPR 191
Query: 183 EIGRAKEFIVKHLEAEMGQSVE 204
++GRA + K L VE
Sbjct: 192 DLGRAINRLKKQLPNRGNAPVE 213
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C + +H G+T+CS+CGLV+E +D EWR F + D + RVG P
Sbjct: 33 CPECDARLQADTEH--GETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 89
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R S +RNL QA
Sbjct: 90 MMHDKGLSTNIGWQDKDAYGNS--LSSRQRQKMQRLRTWNERFRTRDSK-ERNLKQALGE 146
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY A RQ N PR++ E
Sbjct: 147 IERMASALGLPENVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQANVPRSLDEV 206
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ + E+ R +I++ L E+
Sbjct: 207 EHVSR-VDRMELTRTYRYIIRELNLEV 232
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 101/230 (43%), Gaps = 44/230 (19%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD------------ 53
C +C + D G+T+CS+CGLV+EA SVD EWR F + D
Sbjct: 60 CPECG--GRLASDTEHGETVCSDCGLVVEADSVDRGPEWRAFNSGERDSKSRVGAPTTNM 117
Query: 54 -HDP----------------VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLG--- 93
HD RVG P ++ GLST I + LSG
Sbjct: 118 MHDKGLSTNIGWQDKDAYXKSRVGAPTTNMMHDKGLSTNIGWQDKDAYGKSLSGRQRRRM 177
Query: 94 --------KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG 145
+ + R S +RNL QA I M+ LGL +++ A+ IY++ + L G
Sbjct: 178 QRLRTWNERFRTRDSK-ERNLKQALGEIDRMASALGLPDNVRETASVIYRRALSENLLPG 236
Query: 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
R+ E + A LY A RQ PR++ EF +V+ K E+ R ++V+ L
Sbjct: 237 RSIEGVATAALYAAARQVGNPRSLDEFTAVSR-VEKMELTRTYRYVVREL 285
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,952,787,613
Number of Sequences: 23463169
Number of extensions: 156951483
Number of successful extensions: 415342
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 410555
Number of HSP's gapped (non-prelim): 2743
length of query: 254
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 115
effective length of database: 9,097,814,876
effective search space: 1046248710740
effective search space used: 1046248710740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)