BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025357
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 353 bits (905), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 190/224 (84%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP GG E LS SLG+ Q R S+PDR LIQAFK+I+ MSDRL
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224
KKEIGRAKE+IVK L E G +VEMGTIHA D++ F N+ N
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMN 224
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 352 bits (902), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/217 (76%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+DS+C DCK+ TEV FDHSAGDT+C+ECGLVLEA+SVDETSEWR FANESSD+DPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGLSTVIAKP G E LS SLG+ Q R S+PDR+LI AF++I+ M+DRL
Sbjct: 61 GPTNPLLTDGGLSTVIAKPN-GAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYKKVED K +RGRNQ+AI+AACLYIACRQE++PRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGRAKEFIVK LE EMGQS+EMGTIHA D+L F
Sbjct: 180 KKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRF 216
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 343 bits (880), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 162/221 (73%), Positives = 189/221 (85%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D++C+DCKR TEVVFDHSAGDT+CSECGLVLE++S+DETSEWR FANES D+DPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ GGL+TVI+KP G S + LS SLG+ Q R S+PDR LI AFK+I+ M+DRL
Sbjct: 61 GPTNPLLADGGLTTVISKPN-GSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANEIYK+VEDQK RGRNQ+A++AACLYIACRQE+KPRTVKE CSVANG T
Sbjct: 120 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAKE+IVK L E GQ VEMGTIHA D++ F N+
Sbjct: 180 KKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNL 220
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 323 bits (827), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 184/221 (83%), Gaps = 1/221 (0%)
Query: 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVG 60
M+D+YC DCK+ TE+V DHSAGDT+CSECGLVLE++S+DETSEWR FANESS+ DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPLNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRL 120
GP NPLL+ L+TVIAKP G S + LS SLG+ Q R+S+ DR LIQAFK+I+ MS+RL
Sbjct: 61 GPTNPLLADSALTTVIAKPN-GSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERL 119
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GLV TIKDRANE+YK++EDQK RGRNQ+A+ AACLYIACRQE+KPRT+KE C +ANG T
Sbjct: 120 GLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGAT 179
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
KKEIGRAK++IVK L E GQSV++GTIHA D++ F N+
Sbjct: 180 KKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNL 220
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 187 bits (474), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 134/209 (64%), Gaps = 7/209 (3%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
+ ++ D+ AGD ICSECGLV+ +D SEWR F+NE S DP RVGGP NPLLSGG L
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDL 79
Query: 73 STVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANE 132
ST+I T S + + + S DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 80 STIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANN 139
Query: 133 IYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR + +
Sbjct: 140 LFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTL 198
Query: 193 KHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
K LE SV++ I +D++ F N+
Sbjct: 199 KALET----SVDL--ITTADFMCRFCANL 221
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 177 bits (449), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD ICSECGLV+ +D SEWR F+N+ + DP RVG NPLLSGG L+T
Sbjct: 23 LVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPLLSGGDLTT 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ MSDR+ L I DR N ++
Sbjct: 83 MIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRNIIDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR+ +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + I D++ F N+
Sbjct: 202 LE------TNVDLITTGDFMSRFCSNL 222
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 94 KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVA 153
KL ++ + +LI +S LGL ++ A I +K + + GR+ ++ A
Sbjct: 196 KLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAA 255
Query: 154 ACLYIACRQENKPRTVKEFCSVA 176
A +Y+A + + RT KE +A
Sbjct: 256 AAIYMASQASAEKRTQKEIGDIA 278
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 128/207 (61%), Gaps = 7/207 (3%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V D+ AGD IC ECGLV+ +D SEWR F+N+ + DP RVG NPLLS G LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIY 134
+I K T S + S + + S DR ++ AFK I+ M+DR+ L I DR N ++
Sbjct: 83 MIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLF 142
Query: 135 KKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194
K+V +QK L+GR +AI +ACLYIACRQE PRT KE C+V+ +KKEIGR + I+K
Sbjct: 143 KQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKA 201
Query: 195 LEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE SV++ I D++ F N+
Sbjct: 202 LET----SVDL--ITTGDFMSRFCSNL 222
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
++ DH AGD +C CGLV+ VD +EWR F+NE S +DP RVG P NPLLSGG LST
Sbjct: 15 LIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLST 74
Query: 75 VIAKPTAGGSTELLSGSLGKLQARS-SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEI 133
IA G ++ SL Q +S ++ DR + A I MS+R+ L I+D A+ I
Sbjct: 75 TIAVGFGGSDSD---NSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNIQDSASRI 131
Query: 134 YKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
+K V + K LRG+N EA AACLYIACR++ PRT KE C+V+ +KKEIGR + IV+
Sbjct: 132 FKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSR-VSKKEIGRCFKIIVR 190
Query: 194 HLEAEMGQSVEMGTIHASDYLVIFLLNI 221
LE + Q I ++D++ F N+
Sbjct: 191 SLETNLEQ------ITSADFMSRFCGNL 212
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 94 KLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVA 153
K+ RS + I + +S L L +I+ A I K D + GR +I A
Sbjct: 186 KIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAA 245
Query: 154 ACLYIACRQENKPRTVKEFCSVA 176
A +Y+A + + R+ KE VA
Sbjct: 246 AAIYMASQASAEKRSAKEIGDVA 268
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 134/217 (61%), Gaps = 15/217 (6%)
Query: 5 YCADCK-RLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGP 62
+C C+ + +++ D++ GD IC CG+V+ VDE SEWR F+N ES+ DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSS--HPDRNLIQAFKSISAMSDRL 120
+NPLL LST + K GS + SG+L +LQ +S+ DRNL+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGK----GSKD--SGTLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
L T++DRANE+++ ++D+K +GR+ + +VAA LYIACRQE+ RT KE ++ N
Sbjct: 136 NLPQTVQDRANELFRFMDDKKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTN-VP 194
Query: 181 KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEI R K ++ + + TI + D+ F
Sbjct: 195 KKEISRC----YKIMKETFASVLNLQTISSEDFTSRF 227
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 18/210 (8%)
Query: 6 CADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFAN-ESSDHDPVRVGGPL 63
C++C+ +V + S+GDT+C CGLVL +D SEWR F+N + + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLG 121
NPLL+G L T I+ G+ L K Q RS ++NL+ A+K I AM D +
Sbjct: 80 NPLLNGSQLDTTISSYDGAGAM------LAKAQGRSVQVRGEKNLLTAYKEIGAMCDAIS 133
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L I D A ++YK+V+D K L+G++ ++I+AAC+YIACRQ PRT E C++ N K
Sbjct: 134 LPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTN-VPK 192
Query: 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHAS 211
KEIGR + + + L E G +H S
Sbjct: 193 KEIGRVYKTLQRML-------TEGGALHNS 215
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 120/210 (57%), Gaps = 31/210 (14%)
Query: 13 TEVVFDHSAGDTICSECGLVL-EAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGG 71
+ ++ D+ AGD ICSECGLV+ +A+ GGP NPLLSGG
Sbjct: 20 SPLIEDYRAGDMICSECGLVVGDAF-----------------------GGPENPLLSGGH 56
Query: 72 LSTVIAKPTAGGSTELLSGSLGKLQARSSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
LST+I T S + + DR+LI AFK IS+M+DR+ L TI DRAN
Sbjct: 57 LSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKTIVDRAN 116
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
++K+V D K L+GR+ +A +ACLYIACRQE PRT KE C+V+ +KKEIGR +
Sbjct: 117 TLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLT 175
Query: 192 VKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
+K LE SV++ I +D++ F N+
Sbjct: 176 LKALET----SVDL--ITTADFMCRFCANL 199
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 114/201 (56%), Gaps = 9/201 (4%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C+DC +V D+ G +C CG ++ +DE SEWR F +S+ DP R+G NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARSSH--PDRNLIQAFKSISAMSDRLGLV 123
L L T+I+ T GG + S L K+Q ++S P+R L I+A +R L
Sbjct: 73 YLESEQLDTMIS--TGGG---MNSYVLSKIQMKNSMRGPERALKHGMNLITAFCERSNLS 127
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
TI DRA+ I+K +E++K L+G+N E IVAAC+YIACRQE PRT KE SV K+E
Sbjct: 128 RTIIDRAHYIFKNIEERKLLKGKNVEGIVAACIYIACRQEECPRTFKEI-SVMTAVQKRE 186
Query: 184 IGRAKEFIVKHLEAEMGQSVE 204
IGR + I HLE S E
Sbjct: 187 IGRCFKLISPHLERMATMSTE 207
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSD-HDPVRVGGPL 63
C +CK +VV S GD +C+ CGLVL VD SEWR F+N+ + DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLG 121
NPLL G L+T I + A GS ++ L + Q++S D L A+ I+ M D
Sbjct: 88 NPLLDGNHLTTRIGQ--AQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAE 145
Query: 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181
L +KD A E YK +++ L+G++QE+I+A+ + + CR+ R+ KE S+ N K
Sbjct: 146 LPKIVKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTN-VRK 204
Query: 182 KEIGR 186
KEIG+
Sbjct: 205 KEIGK 209
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 6 CADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDH---DPVRVGG 61
C +CK ++V S GD +C+ CGLVL VD SEWR F+N+ DH DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSND--DHNGDDPSRVGE 81
Query: 62 PLNPLLSGGGLSTVIAKPTAGGSTEL-LSGSLGKLQARS--SHPDRNLIQAFKSISAMSD 118
NPLL G LST I K G +T++ + L K Q ++ D + AF I+ + D
Sbjct: 82 ASNPLLDGNNLSTRIGK---GETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
Query: 119 RLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG 178
L +KD A E YK D+K L+G++ E+I+AA + I CR+ RT KE S+ +
Sbjct: 139 AAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV 198
Query: 179 TTKKEIGR 186
T KE G+
Sbjct: 199 KT-KEFGK 205
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 109/206 (52%), Gaps = 13/206 (6%)
Query: 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPL 63
+ C +C TE++ D+ + +C+ CGLV++ VD EWR F +E D RVG P+
Sbjct: 12 TVCPECGS-TELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPI 69
Query: 64 NPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSI 113
+ GLST+I K G + + L K Q + S +RNL A +
Sbjct: 70 TYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSEL 129
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
S RLGL ++++ A+ +Y+ D K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 130 DRDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIA 189
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ TKKE+GR F+ + L ++
Sbjct: 190 EVSR-VTKKEVGRTYRFLTRELNIKL 214
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGL + RA EI +K ++ GR + AA LYIA + +T ++ +A T
Sbjct: 230 LGLSGEAQSRAIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVT 289
Query: 180 TKKEIGRAKEFIVKHLEAEMGQSVEMG 206
E +++ E+ + +EMG
Sbjct: 290 ---------EVTIRNRYKELTEQLEMG 307
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC +CGLV+E +D EWR F +E D RVG P+
Sbjct: 30 CPECGS-PRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST+I K G + + + + L K Q R S+ +RNL A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LGL ++++ A IY+K ++ +RGR+ E +VAA LY ACRQ PRT+ E +
Sbjct: 148 MASALGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATY 207
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
+ +KEIGR FI + L
Sbjct: 208 SR-VDRKEIGRTYRFITREL 226
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179
LGL ++ +A EI KK E+++ GR + AA LY+A + RT +E VA T
Sbjct: 246 LGLSGEVQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVT 305
Query: 180 TKKEIGRAKEFIVK 193
R KE K
Sbjct: 306 EVTIRNRYKELAEK 319
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
++VFD G+ IC+E G V+E ++D+ EWR F E + RVGGPLN + G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI A G T E+L +++AR S DRNL QA + + + L L
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 136
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 137 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 195
Query: 184 IGRAKEFIVKHLE 196
+ R I++ L+
Sbjct: 196 VARCYRLILRELD 208
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +K+ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + ++L+ + S A DY+ F
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRF 228
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D S G+ +C CG V+E VDE EWR F + RVG P + LL GL
Sbjct: 13 TEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF-DPGQREKRARVGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ EA++AAC+Y ACR PRT+ E V+ KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR-VDKKEIGRS 189
Query: 188 KEFIVKHL 195
FI +HL
Sbjct: 190 FRFIARHL 197
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 MEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C T+++ DH G+ +C CGLV++ VD EWR F +E D RVG P
Sbjct: 12 ETKCPECGS-TKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAP 69
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 70 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 129
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y+ + K +RGR+ E +VAA LY ACR+ PRT+ E
Sbjct: 130 LDRDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEI 189
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L +
Sbjct: 190 ADVSR-VSKKEVGRTYRFLTRELHIRL 215
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ IC+E G V+E +D+ EWR F E + RVGGPLN + G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA---KPTAGGST------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
TVI K G S E+L +++ R S DRNL QA + + + L L
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNELERIGNLLNLP 135
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
+KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 136 KAVKDEAALIYRKAVEKGLVRGRSIESVVAASIYAACRRMKMARTLDEIAQFTKA-NRKE 194
Query: 184 IGRAKEFIVKHLEAEM 199
+ R I++ L+ E+
Sbjct: 195 VARCYRLILRELDIEV 210
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ +++ LGL + A EI K + G++ + AA +YIA ++ RT KE
Sbjct: 221 VTRIANLLGLSGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 173 CSVANGTTKKEIGRAKEF 190
VA T R KE
Sbjct: 281 AQVAGVTEVTVRNRYKEL 298
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 12/193 (6%)
Query: 14 EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLS 73
+++FD G+ ICSE G VLE +D+ EWR F E + RVGGPLN + GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVI--AKPTAGGST-------ELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLV 123
T+I A G T E L +++AR S DRNL QA + + + L L
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLNLP 137
Query: 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183
++KD A IY+K ++ +RGR+ E++VAA +Y ACR+ RT+ E +KE
Sbjct: 138 KSVKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLDEIAQYTKA-NRKE 196
Query: 184 IGRAKEFIVKHLE 196
+ R +++ L+
Sbjct: 197 VARCYRLLLRELD 209
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
++ +++ LGL + A EI K + G++ + AA +YIA ++ RT KE
Sbjct: 221 VTRIANLLGLSGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEI 280
Query: 173 CSVANGTTKKEIGRAKEF 190
VA T R KE
Sbjct: 281 AQVAGVTEVTVRNRYKEL 298
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C T ++ D+ G+ +C ECG V+E +D+ EWR F +E ++ R G P+
Sbjct: 16 CPECGS-TNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
+ GLST I+ K + G S + + L K Q R S+ +RNL QA + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ L + +++ A IY+K Q +RGR+ E +VA LY ACR N PRT+ E SV
Sbjct: 134 MAFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASV 193
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
KKEIGR + ++L+ + S A DY+ F
Sbjct: 194 TR-VKKKEIGRTYRIMSRYLKLNIMPS------KAEDYISRF 228
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C V+ D S + +C +CGLVLE +D EWR F N S RVG P
Sbjct: 25 CPECNSAN-VITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLS----GSLGKLQARSSHPD---RNLIQAFKSISA 115
+ GL+T I K G S + L K Q R D RNL A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
M+ LG+ ++++ A+ IY++ + +RGR+ E + ACLY ACRQE PRT++E V
Sbjct: 141 MASALGVPRSVREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEVTEV 200
Query: 176 ANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221
A +KEIGR ++ + L S+E+ +YL F ++
Sbjct: 201 AR-IDQKEIGRTYRYVAQEL------SLEIQPTDPKEYLPRFASDL 239
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
T++VF+ G+ +C+ CG ++ VD+ EWR F E + R G PL+P L GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVIAKPTAGGSTELLS-------GSLGKLQARS---SHPDRNLIQAFKSISAMSDRLGL 122
STVI + LS L K Q R+ + DRNL A + M++ L L
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMANLLNL 135
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
IK+ A IY+K ++ +RGR+ E++VAA +Y ACR ++PRT+ E +K
Sbjct: 136 PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKKLE-VNRK 194
Query: 183 EIGRAKEFIVKHLE 196
E+ R I K L+
Sbjct: 195 EVARCYRLITKELK 208
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
++ C +C ++ D+ + +C +CGLV++ VD EWR F +E D RVG P
Sbjct: 11 ETKCPECGS-DDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAP 68
Query: 63 LNPLLSGGGLSTVI---AKPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKS 112
+ + GLST+I K G + + L K Q + S +RNL A
Sbjct: 69 ITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSE 128
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
+ S RLGL ++++ A+ +Y++ + K +RGR+ E +VAA LY ACR+ N PRT+ E
Sbjct: 129 LDRDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEI 188
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
V+ +KKE+GR F+ + L ++
Sbjct: 189 AEVSR-VSKKEVGRTYRFLTRELNIKL 214
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 14/207 (6%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGP 62
D C +C ++V D G+T C ECGLV+E +D EWR F + D + RVG P
Sbjct: 29 DHGCPECN--GDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAFNAQEQD-EKSRVGAP 85
Query: 63 LNPLLSGGGLSTVIAKPTAGGSTELLSGSLGKLQAR----------SSHPDRNLIQAFKS 112
++ GLST I LSG + R + +RNL QA
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ GL ++++ A+ IY++ + L GR+ E + + LY A RQ N PR++ E
Sbjct: 146 IERMASAFGLPDSVRETASVIYRRALGEDLLPGRSIEGVATSALYAAARQANTPRSLDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEM 199
SV+ + EI R ++ + L E+
Sbjct: 206 ASVSR-VDRGEIARTYRYVARELSLEV 231
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 12/193 (6%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C++CG V+E VDE EWR F R G P+ ++ GL
Sbjct: 16 TEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF-EPGQREKRARTGAPMTLMIHDKGL 74
Query: 73 STVIA---KPTAGGS-TELLSGSLGKL---QAR---SSHPDRNLIQAFKSISAMSDRLGL 122
ST I K G T + L +L Q R + +RNL A + M+ +L L
Sbjct: 75 STDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDRMAAQLRL 134
Query: 123 VTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKK 182
+K+ A +Y+K +K +RGR+ E +V+A LY ACR E PRT+ E SV+ +KK
Sbjct: 135 PRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSK-VSKK 193
Query: 183 EIGRAKEFIVKHL 195
EIGR+ F+ + L
Sbjct: 194 EIGRSYRFMARGL 206
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E VD EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHL 195
FI ++L
Sbjct: 190 YRFIARNL 197
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
TE ++D G+ +C+ CG V+E +D EWR F + S R G P + LL GL
Sbjct: 13 TEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGL 71
Query: 73 STVIA--KPTAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST I + G E + L K Q+R S +RNL A + ++ +L L ++
Sbjct: 72 STDIGIDRSLTGLMREKMY-RLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLPKHVE 130
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +A KKEIGR+
Sbjct: 131 EEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIAR-VEKKEIGRS 189
Query: 188 KEFIVKHL 195
FI ++L
Sbjct: 190 YRFIARNL 197
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI ++ + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 19/200 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
A KKEIGR+ FI ++L
Sbjct: 179 AR-VDKKEIGRSYRFIARNL 197
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 19/200 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C C+ E+++D G+ +C++CG V+E +D EWR F + S R G P +
Sbjct: 7 CPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPESI 64
Query: 66 LLSGGGLSTVIAKPTAGGSTELLSG-------SLGKLQAR---SSHPDRNLIQAFKSISA 115
LL GLST I G LSG L K Q+R S +RNL A +
Sbjct: 65 LLHDKGLSTEI------GIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDR 118
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
++ +L L +++ A +Y++ + +RGR+ E+++AAC+Y ACR PRT+ E +
Sbjct: 119 ITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI 178
Query: 176 ANGTTKKEIGRAKEFIVKHL 195
A KKEIGR+ FI ++L
Sbjct: 179 AR-VDKKEIGRSYRFIARNL 197
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACR 161
P + ++ ++ +D LGL ++ RA EI + + G++ +VAA LYIA
Sbjct: 201 PKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 260
Query: 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193
E + RT +E VA T R KE + K
Sbjct: 261 LEGEKRTQREVAEVARVTEVTVRNRYKELVEK 292
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C L VV D G+++C++CGLV+E +D EWR F ++ D + RVG P
Sbjct: 25 CPECGGL--VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTN 81
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQA---------RSSHPDRNLIQAFKSI 113
+ GLST I K G S L S K+Q +RNL QA I
Sbjct: 82 TMHDKGLSTNIDWRDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEI 139
Query: 114 SAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC 173
M+ LGL +++ A+ IY++ + L GR+ E + +C+Y A RQ PR++ E
Sbjct: 140 DRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQAGVPRSLDEIA 199
Query: 174 SVANGTTKKEIGRAKEFIVKHLEAEMG 200
V+ K EI R ++V+ L E+
Sbjct: 200 DVSR-VEKAEIARTYRYVVRELGLEVA 225
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 3 DSYCADCKRL--TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP---- 56
D Y +C +V D+ + +CSECGLV++ +D+ EWR F DHD
Sbjct: 35 DKYTVECPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAF-----DHDQRMKR 89
Query: 57 VRVGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNL 106
RVG P+ + GLST+I + +S L K Q R S+ +RNL
Sbjct: 90 SRVGAPMTYTIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNL 149
Query: 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKP 166
A + M+ LGL +++ A IY++ ++ +RGR+ E + AA LY ACRQ N P
Sbjct: 150 AFALSELDRMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVP 209
Query: 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHL 195
RT+ E V+ ++KEIGR F+ + L
Sbjct: 210 RTLDEIAEVSR-VSRKEIGRTYRFVSREL 237
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 20/208 (9%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C +V+ D G+++C +CGLV+E +D EWR F N + + RVG P
Sbjct: 32 CPECG--GQVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGSLGKLQ----------ARSSHPDRNLIQAFKS 112
++ GLST I K G S L S K+Q R+S +RNL QA
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNS--LSSNQRQKMQRLRKWNERFRTRNSK-ERNLKQALGE 145
Query: 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172
I M+ LGL +++ A+ IY++ + L GR+ E + A LY + RQ + PR++ E
Sbjct: 146 IERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSIDEV 205
Query: 173 CSVANGTTKKEIGRAKEFIVKHLEAEMG 200
+V+ + E R +IV+ L E+
Sbjct: 206 ANVSR-IDEMEFKRTYRYIVRELSLEVA 232
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VRVGGPLNPLLSGG 70
+V D+ + +C +CGLV++A VDE EWR F DHD RVG P+ +
Sbjct: 49 LVHDYERAELVCGDCGLVIDADFVDEGPEWRAF-----DHDQRMKRSRVGAPMTYTIHDK 103
Query: 71 GLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQAFKSISAMSDRL 120
GLST+I + +S L K Q R S+ +RNL A + M+ L
Sbjct: 104 GLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASAL 163
Query: 121 GLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT 180
GL T+++ A +Y+K D+ +RGR+ E + AA LY ACRQ + PRT+ E V+ +
Sbjct: 164 GLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSR-VS 222
Query: 181 KKEIGRAKEFIVKHL 195
+KEIGR FI + L
Sbjct: 223 RKEIGRTYRFISREL 237
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 6 CADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNP 65
C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G P+
Sbjct: 11 CPECNS-EHLIRDYEHGELICADCGAVIEDAYIDQGPEWRAF-DSDQDERRARTGSPMTY 68
Query: 66 LLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFKSISA 115
L GL+T I+ K G + + + K R S+ +RNL A + ++
Sbjct: 69 LSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQLLND 128
Query: 116 MSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175
+ +LG+ IK+ A IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E S
Sbjct: 129 IGAKLGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEI-SK 187
Query: 176 ANGTTKKEIGRAKEFIVKHLE 196
A+ KK+IG+A + K L+
Sbjct: 188 ASEVNKKKIGKAYRHLAKELD 208
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 15 VVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGLST 74
+V + +C++CGLV+E +D EWR F N + RVG P + GL+T
Sbjct: 37 LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQTMHDKGLTT 95
Query: 75 VIA---KPTAGGSTELLSGS----LGKLQARSSHPD---RNLIQAFKSISAMSDRLGLVT 124
I K G S S L K Q R D RNL A I M+ LG+
Sbjct: 96 TIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPR 155
Query: 125 TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184
++++ A+ IY++ + +RGR+ E + + LY ACR+E PR+++E V+ +KEI
Sbjct: 156 SVREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEISEVSR-VERKEI 214
Query: 185 GRAKEFIVKHLEAEM 199
GR +I + L EM
Sbjct: 215 GRTYRYISQELGLEM 229
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 16 VFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSG---GGL 72
+ D G +C+ CG VL + +D EWR F E + D R GGPL + S +
Sbjct: 54 IEDAERGQIVCASCGYVLMEHILDTGPEWRAFTPEEKE-DRARTGGPLERVTSEELVTRI 112
Query: 73 STVIAKPTAGGSTELLSGSLGKLQAR-SSHPDRNLIQAFKSISAMSDRLGLVTTIKDRAN 131
T + P E+L + + R + +RNL+QA ++ ++ +LG+ + D A
Sbjct: 113 ETTLKSPDLKKKLEILKYKKWQQRIRVQTSYERNLVQATHELNRIAHQLGVPKSCMDEAL 172
Query: 132 EIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191
+YK+V ++GR+ EAI+AACL++ACR + PR++ E +KEI R I
Sbjct: 173 AVYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRA-PRKEIARCFRLI 231
Query: 192 VKHL 195
+ L
Sbjct: 232 AREL 235
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 13 TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGGPLNPLLSGGGL 72
E+VFD G+ +C+ CGLV E +D EWR F N R G P+ L G+
Sbjct: 21 AEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRTGEPVKLRLPDKGI 79
Query: 73 STVIAKP--TAGGSTELLSGSLGKLQAR---SSHPDRNLIQAFKSISAMSDRLGLVTTIK 127
ST+I + +GG + AR S +RN QAF + ++ +L L +++
Sbjct: 80 STIIDRELRDSGGKKNPRMRRIRTWDARIKVSGSRERNFFQAFLELENLASKLQLPESVR 139
Query: 128 DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187
+ A IY+K + +RGR E+++ A ++ AC++ PRT +E + + EI RA
Sbjct: 140 ELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAREIAEALGVSDENEILRA 199
Query: 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIF 217
+ + L +++ SD+L F
Sbjct: 200 YRVLQRRL------NLKQKPTEPSDHLPRF 223
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 117 SDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVA 176
+ +LG+ ++ +A EI +K +++ G+ + AA LYIA E + RT KE VA
Sbjct: 224 ASKLGVSENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVA 283
Query: 177 NGT 179
T
Sbjct: 284 RVT 286
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 21/207 (10%)
Query: 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDP----VR 58
+S C +CK ++V D+ + +C CGLV++ +D EWR F DHD R
Sbjct: 35 ESVCPECKS-RQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAF-----DHDQRMKRSR 88
Query: 59 VGGPLNPLLSGGGLSTVIAKPTAGGSTELLSGS-------LGKLQAR---SSHPDRNLIQ 108
VG P+ + GLST+I +S L K Q R S+ +RNL
Sbjct: 89 VGAPMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAF 148
Query: 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT 168
A + M+ LGL +++ A +Y+ D+ +RGR+ E + AA LY ACRQ + PRT
Sbjct: 149 ALSELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRT 208
Query: 169 VKEFCSVANGTTKKEIGRAKEFIVKHL 195
+ E V+ ++KEIGR FI + L
Sbjct: 209 LDEIAEVSR-VSRKEIGRTYRFISREL 234
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANESSDHDPVRVGG 61
A C +C ++ D+ G+ IC++CG V+E +D+ EWR F + D R G
Sbjct: 13 APKRCPECHS-EHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAF-DSDQDERRARTGS 70
Query: 62 PLNPLLSGGGLSTVIA---KPTAGGSTELLSGS----LGKLQAR---SSHPDRNLIQAFK 111
P+ L GL+T I+ K G + + + K R S+ +RNL A +
Sbjct: 71 PMTYLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSLALQ 130
Query: 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKE 171
++ + +LG+ IK+ + IY+K ++ +RGR+ E+IV A +Y ACR+ N PRT+ E
Sbjct: 131 LLNDIGAKLGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDE 190
Query: 172 FCSVANGTTKKEIGRAKEFIVKHLE 196
A+ KK+IG+A + K L+
Sbjct: 191 IAK-ASEVNKKKIGKAYRHLAKELD 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,065,747
Number of Sequences: 539616
Number of extensions: 3746466
Number of successful extensions: 10033
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 9751
Number of HSP's gapped (non-prelim): 183
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)