Query 025357
Match_columns 254
No_of_seqs 167 out of 1020
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 08:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 2.1E-56 7.3E-61 404.9 12.6 225 3-230 21-255 (345)
2 3k7a_M Transcription initiatio 100.0 5E-52 1.7E-56 376.8 7.4 223 3-229 21-254 (345)
3 1ais_B TFB TFIIB, protein (tra 99.9 4.7E-26 1.6E-30 191.0 12.8 123 100-229 3-127 (200)
4 1c9b_A General transcription f 99.9 2.8E-23 9.5E-28 175.1 14.3 122 102-230 1-122 (207)
5 3k1f_M Transcription initiatio 99.8 6.4E-20 2.2E-24 146.9 4.4 65 3-67 21-87 (197)
6 1dl6_A Transcription factor II 99.7 1.8E-18 6E-23 116.4 4.5 47 3-50 11-57 (58)
7 1ais_B TFB TFIIB, protein (tra 99.6 1.8E-15 6E-20 126.5 11.7 90 108-198 107-196 (200)
8 1zp2_A RNA polymerase II holoe 99.6 8.9E-15 3.1E-19 125.3 14.1 118 106-229 28-153 (235)
9 1pft_A TFIIB, PFTFIIBN; N-term 99.6 6.3E-16 2.1E-20 101.1 4.4 44 4-48 6-49 (50)
10 1c9b_A General transcription f 99.5 1.7E-13 5.9E-18 115.0 10.8 90 108-198 101-190 (207)
11 2ivx_A Cyclin-T2; transcriptio 99.4 3.6E-12 1.2E-16 110.3 15.0 117 107-229 32-165 (257)
12 2i53_A Cyclin K; cell cycle, t 99.4 4.6E-12 1.6E-16 109.6 13.0 113 107-225 42-166 (258)
13 3rgf_B Cyclin-C; protein kinas 99.4 4.2E-12 1.5E-16 111.7 12.8 117 107-229 44-176 (285)
14 4bbr_M Transcription initiatio 99.3 1.5E-13 5.1E-18 124.1 0.0 90 108-198 234-323 (345)
15 2pk2_A Cyclin-T1, protein TAT; 99.3 1.3E-11 4.4E-16 112.0 10.4 117 107-229 39-172 (358)
16 2b9r_A Human cyclin B1; cell c 99.3 5.9E-11 2E-15 103.5 14.2 116 107-229 39-157 (269)
17 1jkw_A Cyclin H; cell cycle, c 99.2 9.2E-11 3.1E-15 104.9 13.9 108 107-221 58-174 (323)
18 2cch_B Cyclin A2, cyclin-A; co 99.2 1.5E-10 5E-15 100.4 12.9 116 107-229 40-159 (260)
19 2w96_A G1/S-specific cyclin-D1 99.2 3.6E-10 1.2E-14 98.6 14.2 115 107-227 58-174 (271)
20 3k7a_M Transcription initiatio 99.2 3.5E-12 1.2E-16 115.2 0.0 88 108-196 234-321 (345)
21 1g3n_C V-cyclin; cyclin-depend 99.1 1.4E-09 4.8E-14 94.0 13.7 115 107-227 52-168 (257)
22 1w98_B Cyclin E, G1/S-specific 99.1 1.6E-09 5.6E-14 95.0 13.7 114 107-227 51-168 (283)
23 2f2c_A Cyclin homolog, V-cycli 99.0 3.4E-09 1.2E-13 91.4 11.6 115 107-227 53-169 (254)
24 3g33_B CCND3 protein; Ser/Thr 98.8 3.9E-08 1.4E-12 87.1 11.9 115 107-227 72-188 (306)
25 3h4c_A Transcription factor TF 98.4 7.3E-07 2.5E-11 73.2 7.8 114 108-224 14-130 (260)
26 1f5q_B Gamma herpesvirus cycli 98.4 5.6E-06 1.9E-10 71.3 13.4 115 107-227 50-166 (252)
27 1zp2_A RNA polymerase II holoe 97.9 1.8E-05 6.3E-10 67.1 6.8 89 108-198 133-221 (235)
28 2cch_B Cyclin A2, cyclin-A; co 97.9 3E-05 1E-09 66.8 8.2 89 108-197 138-228 (260)
29 2b9r_A Human cyclin B1; cell c 97.9 1.5E-05 5.1E-10 69.1 5.9 88 108-196 137-224 (269)
30 2w96_A G1/S-specific cyclin-D1 97.7 0.00011 3.8E-09 63.6 8.4 90 108-198 156-258 (271)
31 3rgf_B Cyclin-C; protein kinas 97.7 0.00023 8E-09 62.0 10.3 104 108-221 156-259 (285)
32 2i53_A Cyclin K; cell cycle, t 97.6 0.00015 5E-09 62.1 7.3 91 108-198 150-252 (258)
33 2ivx_A Cyclin-T2; transcriptio 97.5 0.00037 1.3E-08 59.6 8.6 89 108-196 145-239 (257)
34 2f2c_A Cyclin homolog, V-cycli 97.5 0.00039 1.3E-08 59.5 8.7 87 109-196 152-247 (254)
35 1g3n_C V-cyclin; cyclin-depend 97.4 0.00047 1.6E-08 59.1 7.9 89 108-197 150-248 (257)
36 3m03_A ORC6, origin recognitio 97.1 0.0028 9.6E-08 46.0 8.4 80 113-195 6-91 (95)
37 2js4_A UPF0434 protein BB2007; 97.0 0.00057 1.9E-08 47.0 4.0 30 2-33 7-36 (70)
38 2jr6_A UPF0434 protein NMA0874 97.0 0.00065 2.2E-08 46.4 3.7 30 2-33 7-36 (68)
39 2jny_A Uncharacterized BCR; st 97.0 0.00067 2.3E-08 46.2 3.8 30 2-33 9-38 (67)
40 1qxf_A GR2, 30S ribosomal prot 96.9 0.00035 1.2E-08 46.9 1.6 31 3-34 7-37 (66)
41 2pk7_A Uncharacterized protein 96.8 0.00068 2.3E-08 46.5 2.9 29 3-33 8-36 (69)
42 2hf1_A Tetraacyldisaccharide-1 96.8 0.00058 2E-08 46.7 2.3 29 3-33 8-36 (68)
43 3j20_W 30S ribosomal protein S 96.7 0.00048 1.7E-08 45.9 1.6 31 3-34 15-45 (63)
44 2pk2_A Cyclin-T1, protein TAT; 96.7 0.00094 3.2E-08 60.2 3.8 90 108-197 152-247 (358)
45 3g33_B CCND3 protein; Ser/Thr 96.7 0.0049 1.7E-07 54.2 8.2 88 110-198 172-268 (306)
46 1vq8_Z 50S ribosomal protein L 96.7 0.00096 3.3E-08 47.4 2.8 32 4-37 28-59 (83)
47 2xzm_6 RPS27E; ribosome, trans 96.6 0.00068 2.3E-08 47.5 1.4 31 3-34 32-62 (81)
48 3u5c_b RP61, YS20, 40S ribosom 96.4 0.00086 3E-08 47.0 1.0 31 3-34 34-64 (82)
49 1w98_B Cyclin E, G1/S-specific 96.2 0.016 5.5E-07 50.2 8.3 80 108-196 150-241 (283)
50 3iz6_X 40S ribosomal protein S 96.1 0.0012 4.1E-08 46.7 0.6 30 4-34 37-66 (86)
51 3j20_Y 30S ribosomal protein S 95.9 0.005 1.7E-07 39.3 2.7 28 4-33 20-47 (50)
52 2qdj_A Retinoblastoma-associat 95.8 0.041 1.4E-06 48.3 9.0 71 112-184 5-80 (304)
53 2r7g_A PP110, retinoblastoma-a 95.5 0.04 1.4E-06 49.2 8.1 72 104-175 213-287 (347)
54 4ell_A Retinoblastoma-associat 95.3 0.049 1.7E-06 49.6 8.0 70 105-174 278-350 (411)
55 4elj_A Retinoblastoma-associat 94.8 0.086 3E-06 50.8 8.7 71 104-174 522-595 (656)
56 2kpi_A Uncharacterized protein 94.8 0.026 9E-07 36.8 3.5 27 3-33 10-38 (56)
57 1jkw_A Cyclin H; cell cycle, c 94.8 0.18 6E-06 44.5 10.0 78 120-197 181-261 (323)
58 2akl_A PHNA-like protein PA012 94.7 0.078 2.7E-06 40.3 6.2 28 3-33 27-54 (138)
59 2k4x_A 30S ribosomal protein S 94.5 0.017 5.9E-07 37.6 2.0 29 3-33 18-46 (55)
60 2k5r_A Uncharacterized protein 94.0 0.029 1E-06 40.8 2.7 31 1-33 6-63 (97)
61 4elj_A Retinoblastoma-associat 93.5 0.43 1.5E-05 45.9 10.4 71 112-184 7-82 (656)
62 1k81_A EIF-2-beta, probable tr 93.0 0.046 1.6E-06 32.3 1.9 29 5-33 2-31 (36)
63 3j21_i 50S ribosomal protein L 91.6 0.1 3.5E-06 36.7 2.5 32 4-37 36-67 (83)
64 3h0g_I DNA-directed RNA polyme 91.2 0.17 5.9E-06 37.7 3.6 31 2-34 3-37 (113)
65 2lnb_A Z-DNA-binding protein 1 91.1 0.23 7.9E-06 34.4 3.8 44 154-198 22-65 (80)
66 1nui_A DNA primase/helicase; z 91.0 0.14 4.6E-06 43.4 3.3 28 4-32 15-42 (255)
67 1ffk_W Ribosomal protein L37AE 91.0 0.11 3.6E-06 35.8 2.1 32 4-37 28-59 (73)
68 3iz5_m 60S ribosomal protein L 90.8 0.13 4.5E-06 36.9 2.4 31 4-36 37-67 (92)
69 4a17_Y RPL37A, 60S ribosomal p 90.8 0.15 5.1E-06 37.2 2.7 31 4-36 37-67 (103)
70 3cc2_Z 50S ribosomal protein L 90.7 0.14 4.7E-06 38.3 2.6 32 4-37 61-92 (116)
71 3jyw_9 60S ribosomal protein L 90.4 0.11 3.9E-06 35.5 1.7 32 4-37 27-58 (72)
72 1wii_A Hypothetical UPF0222 pr 90.2 0.11 3.7E-06 36.9 1.5 31 5-35 25-59 (85)
73 3izc_m 60S ribosomal protein R 90.1 0.17 5.7E-06 36.3 2.5 32 4-37 37-68 (92)
74 1qyp_A RNA polymerase II; tran 89.8 0.3 1E-05 31.6 3.4 31 4-35 16-55 (57)
75 6rxn_A Rubredoxin; electron tr 89.8 0.1 3.5E-06 32.6 1.0 16 3-22 4-19 (46)
76 1twf_I B12.6, DNA-directed RNA 89.6 0.2 7E-06 37.8 2.8 32 1-34 2-37 (122)
77 1f5q_B Gamma herpesvirus cycli 88.0 2.6 9E-05 35.5 9.1 86 108-197 148-242 (252)
78 4rxn_A Rubredoxin; electron tr 87.8 0.21 7.2E-06 32.2 1.5 16 3-22 3-18 (54)
79 1twf_L ABC10-alpha, DNA-direct 87.8 0.21 7.2E-06 34.0 1.6 27 4-33 29-56 (70)
80 1gh9_A 8.3 kDa protein (gene M 87.0 0.39 1.3E-05 32.7 2.6 27 4-34 5-31 (71)
81 1e8j_A Rubredoxin; iron-sulfur 86.0 0.24 8E-06 31.7 1.0 11 24-34 4-14 (52)
82 1j1v_A Chromosomal replication 85.5 2 6.8E-05 30.7 5.9 42 154-198 36-78 (94)
83 2pmi_B PHO85 cyclin PHO80, ami 85.1 18 0.00061 31.2 13.8 105 109-221 77-185 (293)
84 1dxg_A Desulforedoxin; non-hem 84.2 0.54 1.9E-05 27.5 1.9 26 4-32 7-32 (36)
85 3qt1_I DNA-directed RNA polyme 83.6 0.49 1.7E-05 36.3 2.0 29 3-33 24-56 (133)
86 2jt1_A PEFI protein; solution 83.6 1.6 5.6E-05 30.0 4.5 33 164-197 22-54 (77)
87 3lwf_A LIN1550 protein, putati 83.5 1.9 6.4E-05 33.9 5.5 46 148-194 26-71 (159)
88 1tfi_A Transcriptional elongat 83.4 1.2 4E-05 28.1 3.4 30 3-32 9-46 (50)
89 3j21_g 50S ribosomal protein L 82.8 0.49 1.7E-05 30.1 1.4 23 4-32 15-37 (51)
90 3u50_C Telomerase-associated p 82.1 0.85 2.9E-05 36.5 3.0 25 5-32 44-68 (172)
91 3pvv_A Chromosomal replication 81.6 3.3 0.00011 30.0 5.8 42 154-198 40-81 (101)
92 2y75_A HTH-type transcriptiona 81.0 2.9 0.0001 31.0 5.6 42 152-194 12-53 (129)
93 3t8r_A Staphylococcus aureus C 80.9 1.7 5.9E-05 33.3 4.3 44 150-194 12-55 (143)
94 2heo_A Z-DNA binding protein 1 80.7 2.5 8.6E-05 27.9 4.5 33 161-194 20-52 (67)
95 1x3u_A Transcriptional regulat 80.2 5.4 0.00019 26.4 6.3 32 166-198 31-62 (79)
96 2apo_B Ribosome biogenesis pro 79.0 0.63 2.2E-05 30.6 1.0 24 3-34 6-29 (60)
97 3ga8_A HTH-type transcriptiona 78.6 1.1 3.7E-05 30.8 2.2 28 4-33 3-46 (78)
98 2v3b_B Rubredoxin 2, rubredoxi 77.3 0.75 2.6E-05 29.7 1.0 12 24-35 4-15 (55)
99 1gnf_A Transcription factor GA 76.6 0.74 2.5E-05 28.6 0.8 31 3-33 4-35 (46)
100 3o9x_A Uncharacterized HTH-typ 76.2 1.4 4.7E-05 33.0 2.3 21 166-187 84-104 (133)
101 2vut_I AREA, nitrogen regulato 76.1 0.95 3.3E-05 27.6 1.1 30 4-33 2-32 (43)
102 2jpc_A SSRB; DNA binding prote 76.0 5.5 0.00019 25.0 5.0 32 166-198 13-44 (61)
103 2ct7_A Ring finger protein 31; 75.9 1.9 6.4E-05 30.1 2.8 27 5-33 27-53 (86)
104 1ylf_A RRF2 family protein; st 75.7 3.4 0.00012 31.7 4.6 45 148-194 13-57 (149)
105 3lsg_A Two-component response 75.7 13 0.00043 26.0 7.4 39 152-191 5-43 (103)
106 1tty_A Sigma-A, RNA polymerase 75.3 4.7 0.00016 27.7 4.9 33 165-198 37-69 (87)
107 2kn9_A Rubredoxin; metalloprot 75.3 0.97 3.3E-05 31.5 1.2 17 21-37 25-41 (81)
108 1je8_A Nitrate/nitrite respons 75.2 10 0.00036 25.6 6.6 31 167-198 37-67 (82)
109 1dx8_A Rubredoxin; electron tr 74.9 1.1 3.6E-05 30.5 1.2 14 22-35 6-19 (70)
110 3mao_A Methionine-R-sulfoxide 74.2 1.5 5.3E-05 32.1 2.0 31 19-49 9-41 (105)
111 2jne_A Hypothetical protein YF 74.2 2.5 8.6E-05 30.4 3.1 27 3-33 32-58 (101)
112 2kv1_A Methionine-R-sulfoxide 73.1 1.5 5.3E-05 33.0 1.9 37 14-50 10-49 (124)
113 2jrp_A Putative cytoplasmic pr 72.9 2.5 8.4E-05 29.5 2.7 29 1-34 1-29 (81)
114 2k9s_A Arabinose operon regula 72.8 12 0.00041 26.4 6.8 39 151-190 5-43 (107)
115 3e6c_C CPRK, cyclic nucleotide 72.8 10 0.00035 30.8 7.2 48 146-194 147-204 (250)
116 2e9h_A EIF-5, eukaryotic trans 72.4 1.9 6.4E-05 34.0 2.3 30 4-33 104-136 (157)
117 4gat_A Nitrogen regulatory pro 71.8 1.2 4E-05 29.9 0.9 31 4-34 10-41 (66)
118 3ulq_B Transcriptional regulat 71.3 4.7 0.00016 28.2 4.1 31 167-198 45-75 (90)
119 3mn2_A Probable ARAC family tr 71.3 18 0.00063 25.4 7.5 39 151-191 4-42 (108)
120 1qgp_A Protein (double strande 71.0 7 0.00024 26.5 4.8 33 164-197 29-61 (77)
121 2k8d_A Peptide methionine sulf 70.9 2.5 8.5E-05 33.0 2.6 32 19-50 57-90 (151)
122 1vk6_A NADH pyrophosphatase; 1 70.8 3 0.0001 35.5 3.5 30 3-34 107-136 (269)
123 3oou_A LIN2118 protein; protei 70.8 14 0.00048 26.1 6.7 40 150-191 6-45 (108)
124 2kao_A Methionine-R-sulfoxide 70.7 2.4 8.3E-05 31.9 2.5 31 19-49 16-48 (124)
125 2l1u_A MSRB2, methionine-R-sul 70.7 2.3 8E-05 32.8 2.4 32 19-50 33-66 (143)
126 2kae_A GATA-type transcription 70.6 0.95 3.3E-05 30.8 0.2 29 4-33 9-40 (71)
127 2g2k_A EIF-5, eukaryotic trans 70.6 1.4 4.9E-05 35.1 1.3 28 5-32 98-128 (170)
128 1fse_A GERE; helix-turn-helix 70.5 16 0.00056 23.5 6.6 31 167-198 27-57 (74)
129 3h0g_L DNA-directed RNA polyme 70.0 2.4 8.2E-05 28.1 2.0 26 4-32 22-47 (63)
130 1d0q_A DNA primase; zinc-bindi 69.8 3.4 0.00012 29.8 3.1 27 5-31 39-66 (103)
131 2p7v_B Sigma-70, RNA polymeras 69.4 6.7 0.00023 25.4 4.3 33 165-198 24-56 (68)
132 3cxk_A Methionine-R-sulfoxide 69.4 2.3 7.9E-05 33.6 2.2 32 19-50 69-102 (164)
133 1uxc_A FRUR (1-57), fructose r 69.4 3.6 0.00012 27.1 2.9 51 167-227 1-51 (65)
134 3b02_A Transcriptional regulat 68.9 7.9 0.00027 30.1 5.4 30 165-195 138-167 (195)
135 1l1o_C Replication protein A 7 68.7 2.8 9.4E-05 33.6 2.6 27 5-34 45-73 (181)
136 3la7_A Global nitrogen regulat 68.6 10 0.00034 30.8 6.2 30 164-194 191-220 (243)
137 2kpj_A SOS-response transcript 68.5 25 0.00086 24.0 7.7 74 163-253 19-92 (94)
138 3oou_A LIN2118 protein; protei 68.4 21 0.00071 25.1 7.2 64 113-190 24-94 (108)
139 3r0a_A Putative transcriptiona 68.1 7.9 0.00027 28.5 4.9 38 156-194 31-69 (123)
140 1p4w_A RCSB; solution structur 68.0 13 0.00043 26.5 5.8 31 167-198 50-80 (99)
141 1qbj_A Protein (double-strande 68.0 10 0.00036 26.0 5.2 30 165-195 26-55 (81)
142 3e0o_A Peptide methionine sulf 68.0 2.5 8.5E-05 32.7 2.1 31 19-49 38-70 (144)
143 2zjr_Z 50S ribosomal protein L 68.0 1.9 6.4E-05 28.3 1.2 24 4-34 31-54 (60)
144 3hcg_A Peptide methionine sulf 67.8 2.5 8.6E-05 32.7 2.1 31 19-49 39-71 (146)
145 3dv8_A Transcriptional regulat 67.6 8.9 0.00031 30.2 5.5 48 146-194 146-196 (220)
146 1ku3_A Sigma factor SIGA; heli 67.4 9 0.00031 25.2 4.7 31 165-196 29-59 (73)
147 1zyb_A Transcription regulator 67.3 11 0.00039 30.1 6.2 49 145-194 161-213 (232)
148 1yk4_A Rubredoxin, RD; electro 66.8 2.3 7.9E-05 27.0 1.4 13 24-36 3-15 (52)
149 1s24_A Rubredoxin 2; electron 66.7 1.5 5.1E-05 31.0 0.5 17 20-36 32-48 (87)
150 2gau_A Transcriptional regulat 66.5 13 0.00044 29.6 6.3 48 146-194 151-207 (232)
151 2fiy_A Protein FDHE homolog; F 66.2 3.1 0.00011 36.3 2.6 30 3-32 182-217 (309)
152 2fmy_A COOA, carbon monoxide o 65.8 11 0.00037 29.8 5.8 30 165-195 166-195 (220)
153 3oio_A Transcriptional regulat 65.7 21 0.00071 25.4 6.8 40 150-191 8-47 (113)
154 3k69_A Putative transcription 65.4 3.8 0.00013 32.1 2.7 42 151-194 14-55 (162)
155 3hcj_A MSRB, peptide methionin 65.0 2.8 9.7E-05 32.7 1.9 31 19-49 46-78 (154)
156 2fiy_A Protein FDHE homolog; F 64.9 5.9 0.0002 34.6 4.1 31 3-33 222-263 (309)
157 3c57_A Two component transcrip 64.7 7.9 0.00027 27.1 4.1 31 167-198 43-73 (95)
158 2aus_D NOP10, ribosome biogene 64.7 1.8 6.3E-05 28.3 0.6 24 2-33 4-27 (60)
159 3mkl_A HTH-type transcriptiona 64.3 25 0.00086 25.2 7.1 39 150-190 8-46 (120)
160 3v2d_5 50S ribosomal protein L 63.8 2.6 8.8E-05 27.6 1.2 24 4-34 31-54 (60)
161 2htj_A P fimbrial regulatory p 63.4 17 0.00057 24.3 5.5 29 165-194 13-41 (81)
162 1ug2_A 2610100B20RIK gene prod 63.1 22 0.00074 25.2 5.9 42 156-198 44-87 (95)
163 1u5k_A Hypothetical protein; O 63.0 4.9 0.00017 33.4 3.2 28 4-31 151-178 (244)
164 1twf_I B12.6, DNA-directed RNA 62.4 7.3 0.00025 29.0 3.7 30 4-33 73-110 (122)
165 3dfx_A Trans-acting T-cell-spe 62.4 1.6 5.6E-05 28.9 0.0 31 4-34 8-39 (63)
166 3cng_A Nudix hydrolase; struct 62.3 5.8 0.0002 31.3 3.4 28 3-31 3-33 (189)
167 2oz6_A Virulence factor regula 61.3 9 0.00031 29.8 4.4 29 165-194 163-191 (207)
168 1vzi_A Desulfoferrodoxin; ferr 61.1 4.4 0.00015 30.5 2.3 28 4-34 8-35 (126)
169 3fx3_A Cyclic nucleotide-bindi 60.8 11 0.00037 30.2 4.9 30 164-194 176-205 (237)
170 3q87_A Putative uncharacterize 60.6 2.3 8E-05 32.1 0.6 17 17-33 93-109 (125)
171 2kdx_A HYPA, hydrogenase/ureas 60.6 3.4 0.00012 30.6 1.6 22 13-34 63-84 (119)
172 2rnj_A Response regulator prot 60.4 11 0.00038 25.9 4.3 32 166-198 44-75 (91)
173 3e97_A Transcriptional regulat 60.3 24 0.00082 27.9 6.9 45 149-194 150-202 (231)
174 3bro_A Transcriptional regulat 60.2 17 0.00058 26.4 5.5 38 156-194 40-77 (141)
175 3dkw_A DNR protein; CRP-FNR, H 60.2 9.7 0.00033 30.1 4.4 31 164-195 176-206 (227)
176 2zcw_A TTHA1359, transcription 60.1 9.9 0.00034 29.7 4.4 29 165-194 145-173 (202)
177 3ryp_A Catabolite gene activat 59.9 10 0.00035 29.6 4.4 29 165-194 166-194 (210)
178 2o8x_A Probable RNA polymerase 59.8 12 0.0004 23.9 4.1 31 166-197 31-61 (70)
179 3hug_A RNA polymerase sigma fa 59.5 11 0.00037 26.0 4.1 29 167-196 54-82 (92)
180 2jmo_A Parkin; IBR, E3 ligase, 59.5 5.2 0.00018 27.5 2.3 29 3-33 25-60 (80)
181 4e2x_A TCAB9; kijanose, tetron 59.3 4.3 0.00015 36.1 2.3 15 24-38 54-68 (416)
182 1t6s_A Conserved hypothetical 59.3 19 0.00065 28.2 5.8 65 149-219 9-85 (162)
183 2pg4_A Uncharacterized protein 58.8 14 0.00047 25.5 4.5 33 161-194 25-58 (95)
184 1xn7_A Hypothetical protein YH 58.8 14 0.00049 25.1 4.4 33 164-197 14-46 (78)
185 2wus_R RODZ, putative uncharac 58.4 32 0.0011 24.8 6.7 51 163-226 17-70 (112)
186 2lk0_A RNA-binding protein 5; 58.3 4.1 0.00014 23.0 1.3 14 20-33 2-15 (32)
187 1xd7_A YWNA; structural genomi 57.7 22 0.00076 26.8 5.9 43 148-194 8-50 (145)
188 1u8b_A ADA polyprotein; protei 57.6 19 0.00064 26.5 5.4 38 164-216 91-128 (133)
189 3p8b_A DNA-directed RNA polyme 57.5 3.3 0.00011 28.8 0.9 23 1-31 21-43 (81)
190 1ovx_A ATP-dependent CLP prote 57.4 5.1 0.00017 26.8 1.8 28 3-32 18-49 (67)
191 2l8n_A Transcriptional repress 57.0 5.5 0.00019 26.4 2.0 50 165-227 8-57 (67)
192 3lsg_A Two-component response 56.9 45 0.0015 23.0 7.3 72 112-191 21-93 (103)
193 1u78_A TC3 transposase, transp 56.6 16 0.00054 26.7 4.8 71 113-190 25-102 (141)
194 2zkr_2 60S ribosomal protein L 56.3 3.6 0.00012 29.5 1.0 23 4-31 17-39 (97)
195 3t72_q RNA polymerase sigma fa 56.2 14 0.00048 26.3 4.2 30 165-195 38-67 (99)
196 2ds5_A CLPX, ATP-dependent CLP 56.1 5.6 0.00019 25.1 1.8 27 2-30 10-40 (51)
197 2d1h_A ST1889, 109AA long hypo 56.0 16 0.00056 25.1 4.6 30 164-194 34-63 (109)
198 1bl0_A Protein (multiple antib 55.7 28 0.00094 25.4 6.0 42 148-191 10-51 (129)
199 3k2z_A LEXA repressor; winged 55.5 18 0.0006 28.8 5.2 39 156-195 14-52 (196)
200 3d0s_A Transcriptional regulat 55.3 21 0.00072 28.2 5.7 29 165-194 176-204 (227)
201 3kcc_A Catabolite gene activat 55.2 18 0.00063 29.6 5.5 29 165-194 216-244 (260)
202 3iwz_A CAP-like, catabolite ac 54.2 14 0.00048 29.2 4.4 29 165-194 186-214 (230)
203 1q1h_A TFE, transcription fact 54.1 23 0.00078 25.0 5.2 31 163-194 30-60 (110)
204 1jhg_A Trp operon repressor; c 54.0 16 0.00053 26.4 4.1 27 164-191 56-82 (101)
205 4gop_C Putative uncharacterize 53.9 8.5 0.00029 35.0 3.4 27 5-34 310-338 (444)
206 2ldf_A Sarafotoxin-M, SRTX-M; 53.1 2.4 8.3E-05 22.6 -0.3 18 233-250 8-25 (26)
207 2nnn_A Probable transcriptiona 52.2 61 0.0021 23.1 7.6 28 166-194 52-79 (140)
208 1j5y_A Transcriptional regulat 51.7 26 0.00088 27.6 5.6 34 160-194 30-63 (187)
209 2p5k_A Arginine repressor; DNA 50.6 30 0.001 21.5 4.9 27 164-191 17-48 (64)
210 1ft9_A Carbon monoxide oxidati 50.3 11 0.00038 29.9 3.2 30 165-195 162-191 (222)
211 4ev0_A Transcription regulator 50.3 16 0.00054 28.6 4.1 54 165-221 162-215 (216)
212 3eco_A MEPR; mutlidrug efflux 49.8 25 0.00084 25.5 4.9 30 164-194 45-74 (139)
213 1vq8_1 50S ribosomal protein L 49.7 6.9 0.00024 25.2 1.4 22 5-31 19-40 (57)
214 3fym_A Putative uncharacterize 49.5 26 0.00088 25.9 4.9 52 165-226 15-66 (130)
215 2x4h_A Hypothetical protein SS 49.4 56 0.0019 23.7 6.9 31 163-194 28-58 (139)
216 1vfy_A Phosphatidylinositol-3- 49.3 12 0.00042 25.0 2.8 29 2-34 10-38 (73)
217 4esj_A Type-2 restriction enzy 49.1 8.6 0.00029 32.2 2.3 29 4-33 35-66 (257)
218 2l02_A Uncharacterized protein 49.1 40 0.0014 23.3 5.3 49 148-198 5-53 (82)
219 1tc3_C Protein (TC3 transposas 48.9 19 0.00065 20.7 3.4 23 167-190 22-44 (51)
220 2k1p_A Zinc finger RAN-binding 48.8 6.3 0.00022 22.3 1.0 13 20-32 3-15 (33)
221 2j6a_A Protein TRM112; transla 48.7 3.7 0.00013 31.6 0.0 18 16-33 102-119 (141)
222 2vn2_A DNAD, chromosome replic 48.7 62 0.0021 23.7 7.0 30 164-194 48-78 (128)
223 3oio_A Transcriptional regulat 48.5 46 0.0016 23.4 6.1 69 113-191 26-97 (113)
224 2fu4_A Ferric uptake regulatio 48.3 29 0.00099 23.0 4.7 29 165-194 32-65 (83)
225 3kz3_A Repressor protein CI; f 48.2 28 0.00094 22.9 4.5 45 166-226 25-69 (80)
226 2bgc_A PRFA; bacterial infecti 48.0 25 0.00085 28.2 5.1 29 165-194 167-197 (238)
227 2z99_A Putative uncharacterize 47.9 33 0.0011 28.3 5.7 74 149-228 17-103 (219)
228 1l3l_A Transcriptional activat 47.7 45 0.0015 26.9 6.6 32 166-198 188-219 (234)
229 3p2a_A Thioredoxin 2, putative 47.6 6.4 0.00022 29.3 1.2 33 4-36 6-38 (148)
230 3e0m_A Peptide methionine sulf 47.4 8.7 0.0003 33.5 2.2 31 19-49 205-237 (313)
231 2qsb_A UPF0147 protein TA0600; 47.3 71 0.0024 22.4 7.3 52 103-158 9-60 (89)
232 3szt_A QCSR, quorum-sensing co 47.2 33 0.0011 27.9 5.8 32 166-198 190-221 (237)
233 2lkp_A Transcriptional regulat 47.0 73 0.0025 22.5 8.0 32 165-198 44-75 (119)
234 3a43_A HYPD, hydrogenase nicke 46.9 5.8 0.0002 30.3 0.9 23 13-35 60-82 (139)
235 2au3_A DNA primase; zinc ribbo 46.8 12 0.0004 33.7 3.0 27 5-31 36-63 (407)
236 1zs4_A Regulatory protein CII; 46.7 30 0.001 24.0 4.5 20 167-187 25-44 (83)
237 1oyi_A Double-stranded RNA-bin 46.7 25 0.00085 24.3 4.0 44 150-197 17-60 (82)
238 3omt_A Uncharacterized protein 46.6 37 0.0013 21.6 4.9 46 166-227 21-66 (73)
239 1ku9_A Hypothetical protein MJ 46.6 29 0.00099 25.2 4.9 30 164-194 39-68 (152)
240 2q0o_A Probable transcriptiona 46.0 38 0.0013 27.4 5.9 32 166-198 190-221 (236)
241 3nrv_A Putative transcriptiona 45.9 72 0.0025 23.1 7.1 31 162-194 51-81 (148)
242 4hc9_A Trans-acting T-cell-spe 45.9 6.6 0.00023 29.1 1.0 31 4-34 6-37 (115)
243 2k02_A Ferrous iron transport 45.9 18 0.0006 25.3 3.2 31 164-195 14-44 (87)
244 1r69_A Repressor protein CI; g 45.5 37 0.0013 21.1 4.7 45 166-227 14-58 (69)
245 2xi8_A Putative transcription 45.3 35 0.0012 20.9 4.5 46 166-227 14-59 (66)
246 2fnf_X Putative RAS effector N 45.2 14 0.00046 24.8 2.5 27 4-36 36-62 (72)
247 3cuo_A Uncharacterized HTH-typ 44.7 24 0.00083 23.9 3.9 30 163-193 35-64 (99)
248 2xzm_9 RPS31E; ribosome, trans 44.5 14 0.00048 29.8 2.9 28 4-33 114-141 (189)
249 1kbe_A Kinase suppressor of RA 44.3 11 0.00036 23.5 1.6 24 4-34 15-38 (49)
250 2eth_A Transcriptional regulat 44.2 36 0.0012 25.2 5.1 28 166-194 58-85 (154)
251 2qzg_A Conserved uncharacteriz 43.9 83 0.0028 22.2 6.8 54 102-159 12-65 (94)
252 2cyy_A Putative HTH-type trans 43.8 43 0.0015 25.0 5.6 30 164-194 19-48 (151)
253 3mzy_A RNA polymerase sigma-H 43.8 25 0.00084 26.0 4.1 30 166-196 124-153 (164)
254 2r1j_L Repressor protein C2; p 43.8 43 0.0015 20.6 4.8 45 166-226 18-62 (68)
255 1on2_A Transcriptional regulat 43.8 38 0.0013 24.8 5.2 29 165-194 21-49 (142)
256 2qvo_A Uncharacterized protein 43.6 71 0.0024 21.7 6.3 30 164-194 28-57 (95)
257 1y7y_A C.AHDI; helix-turn-heli 43.6 58 0.002 20.4 5.5 45 166-226 26-70 (74)
258 1rfh_A RAS association (ralgds 43.5 18 0.00062 23.1 2.8 26 4-35 23-48 (59)
259 3fm5_A Transcriptional regulat 43.3 28 0.00095 25.7 4.3 32 162-194 50-81 (150)
260 2frh_A SARA, staphylococcal ac 43.0 26 0.00088 25.4 4.0 34 160-194 47-80 (127)
261 3bs3_A Putative DNA-binding pr 42.9 47 0.0016 21.1 5.0 46 166-227 23-68 (76)
262 1edn_A Endothelin-1; signal po 42.8 5.1 0.00017 21.4 -0.0 18 232-249 7-24 (26)
263 2ewt_A BLDD, putative DNA-bind 42.6 58 0.002 20.3 5.4 45 166-226 21-67 (71)
264 3i4p_A Transcriptional regulat 42.6 38 0.0013 25.8 5.1 32 162-194 13-44 (162)
265 1bja_A Transcription regulator 42.5 36 0.0012 24.2 4.5 37 156-194 21-58 (95)
266 3j21_e 50S ribosomal protein L 42.4 8.3 0.00028 25.3 1.0 23 4-31 18-40 (62)
267 3bj6_A Transcriptional regulat 42.4 36 0.0012 24.9 4.9 28 166-194 54-81 (152)
268 1xsv_A Hypothetical UPF0122 pr 42.3 31 0.0011 24.9 4.3 29 167-196 42-70 (113)
269 2k9s_A Arabinose operon regula 42.0 80 0.0027 21.8 6.5 68 113-190 23-93 (107)
270 2dbb_A Putative HTH-type trans 41.8 41 0.0014 25.1 5.1 65 164-230 21-98 (151)
271 2riq_A Poly [ADP-ribose] polym 41.1 17 0.00057 28.6 2.7 23 4-32 79-101 (160)
272 1i1g_A Transcriptional regulat 41.0 31 0.0011 25.3 4.3 30 164-194 16-45 (141)
273 3bvo_A CO-chaperone protein HS 40.9 10 0.00034 31.0 1.5 28 4-34 11-38 (207)
274 2hr3_A Probable transcriptiona 40.9 54 0.0018 23.8 5.6 30 164-194 48-77 (147)
275 1zug_A Phage 434 CRO protein; 40.7 47 0.0016 20.7 4.6 45 166-227 16-60 (71)
276 3jth_A Transcription activator 40.7 45 0.0015 22.8 4.8 28 165-193 35-62 (98)
277 1sfx_A Conserved hypothetical 40.6 31 0.0011 23.5 4.0 29 165-194 33-61 (109)
278 2rdp_A Putative transcriptiona 40.3 44 0.0015 24.4 5.1 28 166-194 56-83 (150)
279 2hku_A A putative transcriptio 40.2 50 0.0017 25.4 5.7 41 147-189 21-61 (215)
280 3jw4_A Transcriptional regulat 40.1 29 0.00098 25.5 3.9 38 156-194 47-84 (148)
281 2wiu_B HTH-type transcriptiona 40.0 63 0.0021 21.2 5.4 46 166-227 25-70 (88)
282 3eus_A DNA-binding protein; st 39.9 69 0.0024 21.3 5.6 49 165-229 26-74 (86)
283 2b5a_A C.BCLI; helix-turn-heli 39.9 51 0.0017 21.0 4.8 45 166-226 23-67 (77)
284 1adr_A P22 C2 repressor; trans 39.7 54 0.0018 20.7 4.9 46 166-227 18-63 (76)
285 2jrr_A Uncharacterized protein 39.7 14 0.00048 24.6 1.8 16 19-34 36-51 (67)
286 3deu_A Transcriptional regulat 39.6 42 0.0014 25.4 5.0 31 163-194 65-95 (166)
287 1s7o_A Hypothetical UPF0122 pr 39.6 34 0.0012 24.8 4.1 29 167-196 39-67 (113)
288 2cfx_A HTH-type transcriptiona 39.4 42 0.0014 24.9 4.8 30 164-194 17-46 (144)
289 2fbh_A Transcriptional regulat 39.2 56 0.0019 23.5 5.5 31 163-194 49-79 (146)
290 3ech_A MEXR, multidrug resista 39.1 34 0.0012 24.9 4.2 28 166-194 51-78 (142)
291 3bdd_A Regulatory protein MARR 39.0 48 0.0017 23.8 5.1 28 166-194 45-72 (142)
292 1z91_A Organic hydroperoxide r 39.0 34 0.0012 24.9 4.2 28 166-194 54-81 (147)
293 1lj9_A Transcriptional regulat 38.9 45 0.0015 24.1 4.9 28 166-194 43-70 (144)
294 1y0u_A Arsenical resistance op 38.7 36 0.0012 23.3 4.1 29 165-194 42-70 (96)
295 1ub9_A Hypothetical protein PH 38.7 39 0.0013 22.8 4.2 30 165-195 29-58 (100)
296 2olm_A Nucleoporin-like protei 38.5 12 0.0004 28.7 1.5 29 4-33 26-55 (140)
297 2kdx_A HYPA, hydrogenase/ureas 38.5 20 0.00067 26.3 2.7 26 4-33 74-100 (119)
298 2w0t_A Lethal(3)malignant brai 38.4 13 0.00044 22.5 1.3 17 18-34 1-17 (43)
299 2yw8_A RUN and FYVE domain-con 38.4 21 0.0007 24.4 2.6 29 4-36 20-48 (82)
300 2cg4_A Regulatory protein ASNC 38.4 47 0.0016 24.8 5.0 30 164-194 20-49 (152)
301 1qpz_A PURA, protein (purine n 38.4 27 0.00093 29.5 4.0 47 167-226 1-47 (340)
302 1neq_A DNA-binding protein NER 38.2 74 0.0025 21.0 5.4 45 164-227 20-64 (74)
303 3tqn_A Transcriptional regulat 38.2 30 0.001 24.8 3.7 29 165-194 31-60 (113)
304 2kko_A Possible transcriptiona 38.1 57 0.002 22.9 5.2 57 124-194 9-65 (108)
305 3cjn_A Transcriptional regulat 38.0 46 0.0016 24.7 4.9 29 165-194 65-93 (162)
306 2iqj_A Stromal membrane-associ 38.0 11 0.00038 28.6 1.2 29 4-33 28-57 (134)
307 4ham_A LMO2241 protein; struct 38.0 30 0.001 25.6 3.7 30 164-194 35-65 (134)
308 3f6w_A XRE-family like protein 37.9 81 0.0028 20.4 5.7 45 166-226 27-71 (83)
309 2pn6_A ST1022, 150AA long hypo 37.8 51 0.0017 24.4 5.1 31 163-194 14-44 (150)
310 4ayb_P DNA-directed RNA polyme 37.6 15 0.00051 22.7 1.5 33 1-33 1-33 (48)
311 2p57_A GTPase-activating prote 37.6 9.9 0.00034 29.3 0.9 29 4-33 38-67 (144)
312 2k9q_A Uncharacterized protein 37.6 63 0.0021 20.8 5.0 46 166-227 15-60 (77)
313 2owa_A Arfgap-like finger doma 37.5 11 0.00039 28.7 1.2 29 4-33 37-66 (138)
314 2e1c_A Putative HTH-type trans 37.4 56 0.0019 25.3 5.4 29 165-194 40-68 (171)
315 2fbi_A Probable transcriptiona 37.2 46 0.0016 23.9 4.7 28 166-194 50-77 (142)
316 4b8x_A SCO5413, possible MARR- 37.2 27 0.00091 26.1 3.3 31 163-194 48-78 (147)
317 3ih6_A Putative zinc protease; 37.2 1.3E+02 0.0046 22.7 8.2 82 104-191 99-180 (197)
318 1ryq_A DNA-directed RNA polyme 36.9 10 0.00035 25.5 0.7 19 4-30 12-30 (69)
319 1xwr_A Regulatory protein CII; 36.9 28 0.00095 24.9 3.1 48 167-221 24-78 (97)
320 2ict_A Antitoxin HIGA; helix-t 36.8 65 0.0022 21.6 5.2 45 166-226 21-65 (94)
321 2b0l_A GTP-sensing transcripti 36.7 37 0.0013 24.1 3.8 30 164-194 40-70 (102)
322 3dwd_A ADP-ribosylation factor 36.6 13 0.00045 28.8 1.4 29 4-33 39-68 (147)
323 2lr8_A CAsp8-associated protei 42.7 7.4 0.00025 26.1 0.0 41 155-196 24-65 (70)
324 2a61_A Transcriptional regulat 36.3 56 0.0019 23.6 5.0 29 165-194 46-74 (145)
325 2fa5_A Transcriptional regulat 36.2 63 0.0022 23.9 5.4 30 164-194 61-90 (162)
326 3s8q_A R-M controller protein; 36.0 69 0.0024 20.8 5.1 46 165-226 23-68 (82)
327 3c5k_A HD6, histone deacetylas 35.8 21 0.00073 26.0 2.4 24 4-35 25-48 (109)
328 3t76_A VANU, transcriptional r 35.6 30 0.001 23.8 3.1 44 166-226 37-80 (88)
329 3nqo_A MARR-family transcripti 35.4 46 0.0016 25.8 4.6 38 156-194 47-84 (189)
330 3qp6_A CVIR transcriptional re 35.4 34 0.0012 28.6 4.0 32 166-198 212-243 (265)
331 2hzt_A Putative HTH-type trans 35.4 81 0.0028 22.0 5.6 30 164-194 25-55 (107)
332 2p5v_A Transcriptional regulat 35.1 51 0.0018 24.9 4.8 30 164-194 22-51 (162)
333 2jvm_A Uncharacterized protein 35.0 17 0.0006 25.0 1.7 22 13-34 41-64 (80)
334 3qq6_A HTH-type transcriptiona 34.9 61 0.0021 21.2 4.6 46 166-226 23-68 (78)
335 3h5t_A Transcriptional regulat 34.8 25 0.00084 30.2 3.2 25 164-189 7-31 (366)
336 3lfp_A CSP231I C protein; tran 34.7 72 0.0025 21.7 5.1 50 166-227 14-63 (98)
337 2oqg_A Possible transcriptiona 34.6 45 0.0015 23.3 4.1 29 165-194 33-61 (114)
338 1o5l_A Transcriptional regulat 34.6 8.4 0.00029 30.5 0.0 30 164-194 162-191 (213)
339 2w7n_A TRFB transcriptional re 34.5 1.1E+02 0.0037 21.8 6.1 42 149-196 22-63 (101)
340 3cdh_A Transcriptional regulat 34.2 51 0.0018 24.2 4.6 30 164-194 55-84 (155)
341 2nyx_A Probable transcriptiona 34.1 48 0.0016 25.0 4.5 28 166-194 59-86 (168)
342 2gxg_A 146AA long hypothetical 34.0 60 0.0021 23.4 4.9 30 164-194 48-77 (146)
343 3neu_A LIN1836 protein; struct 34.0 48 0.0016 24.2 4.3 29 165-194 35-64 (125)
344 2con_A RUH-035 protein, NIN on 34.0 19 0.00066 24.7 1.8 11 1-11 28-38 (79)
345 3tgn_A ADC operon repressor AD 33.8 57 0.0019 23.6 4.7 27 167-194 52-78 (146)
346 2yve_A Transcriptional regulat 33.7 60 0.002 24.5 5.0 41 147-189 5-46 (185)
347 2x48_A CAG38821; archeal virus 33.6 34 0.0012 20.7 2.9 22 167-189 32-53 (55)
348 3clo_A Transcriptional regulat 33.6 72 0.0025 26.1 5.8 31 167-198 213-243 (258)
349 1twf_J DNA-directed RNA polyme 33.6 11 0.00038 25.4 0.5 12 24-35 5-16 (70)
350 3by6_A Predicted transcription 33.5 39 0.0013 24.8 3.7 29 165-194 33-62 (126)
351 3g5g_A Regulatory protein; tra 33.5 75 0.0026 22.0 5.1 45 166-226 41-85 (99)
352 2crr_A Stromal membrane-associ 33.4 13 0.00043 28.6 0.9 29 4-33 30-59 (141)
353 3e6m_A MARR family transcripti 33.4 46 0.0016 24.8 4.2 28 166-194 67-94 (161)
354 1yio_A Response regulatory pro 33.4 77 0.0026 24.3 5.7 31 167-198 158-188 (208)
355 3b7h_A Prophage LP1 protein 11 33.2 58 0.002 20.7 4.2 47 166-227 20-66 (78)
356 2a6c_A Helix-turn-helix motif; 33.2 79 0.0027 20.8 5.0 49 165-228 30-78 (83)
357 4a18_A RPL37, ribosomal protei 33.1 18 0.00063 25.6 1.6 23 4-31 17-39 (94)
358 2o3f_A Putative HTH-type trans 33.0 26 0.00088 25.3 2.5 24 166-190 39-62 (111)
359 2ia0_A Putative HTH-type trans 33.0 58 0.002 25.1 4.8 66 164-231 29-114 (171)
360 3u2r_A Regulatory protein MARR 32.9 39 0.0013 25.5 3.7 38 156-194 52-89 (168)
361 2w25_A Probable transcriptiona 32.8 60 0.0021 24.1 4.8 30 164-194 19-48 (150)
362 1or7_A Sigma-24, RNA polymeras 32.7 47 0.0016 25.4 4.2 30 166-196 156-185 (194)
363 3k0l_A Repressor protein; heli 32.6 47 0.0016 24.8 4.1 28 166-194 60-87 (162)
364 1x57_A Endothelial differentia 32.5 1.1E+02 0.0037 20.3 5.9 48 164-227 24-71 (91)
365 1y07_A Desulfoferrodoxin (RBO) 32.5 18 0.00063 27.1 1.7 26 4-34 8-36 (128)
366 1wd2_A Ariadne-1 protein homol 32.5 15 0.00052 23.7 1.0 29 3-33 6-36 (60)
367 1jgs_A Multiple antibiotic res 32.5 70 0.0024 22.8 5.0 29 165-194 47-75 (138)
368 4aik_A Transcriptional regulat 32.3 84 0.0029 23.4 5.5 32 162-194 42-73 (151)
369 1lmb_3 Protein (lambda repress 32.3 85 0.0029 20.8 5.1 45 166-226 30-74 (92)
370 3pqk_A Biofilm growth-associat 32.2 53 0.0018 22.6 4.1 29 165-194 35-63 (102)
371 2lfw_A PHYR sigma-like domain; 32.2 44 0.0015 25.1 3.9 30 166-196 109-138 (157)
372 2dk5_A DNA-directed RNA polyme 31.8 95 0.0033 21.5 5.3 30 164-194 34-63 (91)
373 1x4u_A Zinc finger, FYVE domai 31.8 37 0.0013 23.1 3.1 27 4-34 15-41 (84)
374 1s3j_A YUSO protein; structura 31.7 48 0.0017 24.3 4.0 28 166-194 51-78 (155)
375 2fjr_A Repressor protein CI; g 31.5 62 0.0021 24.9 4.8 41 168-225 22-62 (189)
376 2l0k_A Stage III sporulation p 31.4 32 0.0011 24.2 2.7 23 167-190 21-43 (93)
377 3klo_A Transcriptional regulat 31.3 90 0.0031 24.4 5.9 47 166-223 174-220 (225)
378 2pex_A Transcriptional regulat 31.3 70 0.0024 23.4 4.9 29 165-194 60-88 (153)
379 2crw_A ARF GAP 3, ADP-ribosyla 31.2 13 0.00046 28.7 0.7 29 4-33 30-59 (149)
380 1r1u_A CZRA, repressor protein 31.2 54 0.0019 22.9 4.0 28 165-193 38-65 (106)
381 3ppb_A Putative TETR family tr 31.1 70 0.0024 23.7 5.0 41 147-189 10-51 (195)
382 3g3z_A NMB1585, transcriptiona 31.1 94 0.0032 22.4 5.6 28 166-194 45-72 (145)
383 1z2q_A LM5-1; membrane protein 31.1 31 0.0011 23.6 2.6 28 4-35 22-49 (84)
384 3b73_A PHIH1 repressor-like pr 31.1 60 0.002 23.5 4.2 34 159-194 21-56 (111)
385 3hrs_A Metalloregulator SCAR; 31.0 43 0.0015 26.9 3.9 31 163-194 17-47 (214)
386 2ek5_A Predicted transcription 30.8 57 0.002 24.0 4.2 29 165-194 26-55 (129)
387 2gnr_A Conserved hypothetical 30.8 21 0.00072 27.3 1.8 23 4-32 48-70 (145)
388 3mn2_A Probable ARAC family tr 30.8 1.3E+02 0.0045 20.6 8.2 68 113-190 21-93 (108)
389 2obp_A Putative DNA-binding pr 30.7 1.2E+02 0.0042 21.3 5.8 31 163-194 33-63 (96)
390 3bqz_B HTH-type transcriptiona 30.7 78 0.0027 23.5 5.2 37 150-188 6-43 (194)
391 2qtq_A Transcriptional regulat 30.7 1E+02 0.0034 23.2 5.9 41 147-189 17-58 (213)
392 3t7l_A Zinc finger FYVE domain 30.7 28 0.00097 24.2 2.3 29 4-36 21-49 (90)
393 2w48_A Sorbitol operon regulat 30.4 74 0.0025 27.0 5.5 30 164-194 19-48 (315)
394 1wfk_A Zinc finger, FYVE domai 30.2 33 0.0011 23.8 2.6 27 4-34 10-36 (88)
395 3oop_A LIN2960 protein; protei 30.1 77 0.0026 22.8 4.9 29 165-194 50-78 (143)
396 1jko_C HIN recombinase, DNA-in 30.1 23 0.00078 20.7 1.6 22 167-189 22-43 (52)
397 3lcz_A YCZA, inhibitor of trap 30.1 18 0.00061 22.8 1.0 21 4-30 10-30 (53)
398 3e0o_A Peptide methionine sulf 30.0 30 0.001 26.6 2.5 27 16-43 79-109 (144)
399 3irb_A Uncharacterized protein 30.0 20 0.00068 27.4 1.5 23 4-32 48-70 (145)
400 1joc_A EEA1, early endosomal a 30.0 28 0.00096 25.9 2.3 29 4-36 70-98 (125)
401 3mlf_A Transcriptional regulat 29.9 98 0.0033 21.8 5.3 45 166-226 36-80 (111)
402 1srb_A Sarafotoxins precursor; 29.9 6 0.0002 21.1 -1.0 17 233-249 8-24 (26)
403 3vpr_A Transcriptional regulat 29.7 1E+02 0.0035 23.0 5.7 39 149-189 6-45 (190)
404 2hsg_A Glucose-resistance amyl 29.7 32 0.0011 28.9 3.0 22 167-189 3-24 (332)
405 2qww_A Transcriptional regulat 29.7 76 0.0026 23.1 4.9 29 165-194 54-82 (154)
406 3sub_A ADP-ribosylation factor 29.6 18 0.00063 28.4 1.2 29 4-33 23-52 (163)
407 4ghj_A Probable transcriptiona 29.6 1.2E+02 0.004 21.3 5.6 46 165-228 48-93 (101)
408 1mkm_A ICLR transcriptional re 29.6 1E+02 0.0036 25.0 6.1 32 162-194 19-50 (249)
409 3vp5_A Transcriptional regulat 29.5 67 0.0023 24.3 4.6 40 147-188 13-53 (189)
410 1d5y_A ROB transcription facto 29.5 64 0.0022 26.6 4.8 74 151-226 5-99 (292)
411 2i5o_A DNA polymerase ETA; zin 29.4 14 0.00048 21.8 0.4 16 21-36 7-22 (39)
412 1r1t_A Transcriptional repress 29.3 1.1E+02 0.0037 22.1 5.5 62 122-198 28-89 (122)
413 4fe7_A Xylose operon regulator 29.3 2E+02 0.0067 25.0 8.2 94 103-218 304-408 (412)
414 1xmk_A Double-stranded RNA-spe 29.2 61 0.0021 22.0 3.8 28 166-194 25-53 (79)
415 2ofy_A Putative XRE-family tra 29.1 96 0.0033 20.2 4.9 44 168-226 29-72 (86)
416 4fxe_A Antitoxin RELB; toxin/a 29.0 1.3E+02 0.0044 20.3 5.4 46 120-172 6-51 (79)
417 2l01_A Uncharacterized protein 28.9 1.2E+02 0.004 20.7 5.0 49 148-198 7-56 (77)
418 3iz5_l 60S ribosomal protein L 28.8 20 0.00068 25.4 1.1 23 4-31 17-39 (94)
419 3mkl_A HTH-type transcriptiona 28.7 1.5E+02 0.0053 20.8 10.3 85 113-222 26-113 (120)
420 2l8e_A Polyhomeotic-like prote 28.6 17 0.00058 22.6 0.7 22 14-35 9-30 (49)
421 4ets_A Ferric uptake regulatio 28.6 19 0.00064 28.0 1.1 12 23-34 107-118 (162)
422 3qkx_A Uncharacterized HTH-typ 28.6 74 0.0025 23.4 4.7 40 148-189 10-50 (188)
423 3op9_A PLI0006 protein; struct 28.5 86 0.0029 21.9 4.8 45 166-226 22-66 (114)
424 3kjx_A Transcriptional regulat 28.2 27 0.00091 29.7 2.2 25 164-189 8-32 (344)
425 1dvp_A HRS, hepatocyte growth 28.1 35 0.0012 27.7 2.8 30 3-36 161-190 (220)
426 4fx0_A Probable transcriptiona 28.1 71 0.0024 23.7 4.4 30 164-194 50-79 (148)
427 2ctt_A DNAJ homolog subfamily 28.0 26 0.00087 24.9 1.7 9 4-12 46-54 (104)
428 3f1b_A TETR-like transcription 28.0 84 0.0029 23.5 5.0 39 148-188 16-55 (203)
429 3kxa_A NGO0477 protein, putati 28.0 1.5E+02 0.0052 21.9 6.3 46 165-226 80-125 (141)
430 4hbl_A Transcriptional regulat 27.9 91 0.0031 22.7 5.0 29 165-194 54-82 (149)
431 2o3f_A Putative HTH-type trans 27.9 47 0.0016 23.9 3.2 14 122-135 19-32 (111)
432 3bja_A Transcriptional regulat 27.9 45 0.0015 23.8 3.2 30 164-194 45-74 (139)
433 1p2f_A Response regulator; DRR 27.9 75 0.0026 24.6 4.7 43 155-198 153-198 (220)
434 3frw_A Putative Trp repressor 27.9 73 0.0025 23.1 4.1 27 166-193 58-84 (107)
435 2rae_A Transcriptional regulat 27.8 96 0.0033 23.4 5.3 40 147-188 18-58 (207)
436 1rp3_A RNA polymerase sigma fa 27.8 61 0.0021 25.5 4.2 31 165-196 202-232 (239)
437 1rr7_A Middle operon regulator 27.8 1.8E+02 0.0063 21.4 11.5 88 105-194 31-119 (129)
438 2bv6_A MGRA, HTH-type transcri 27.7 43 0.0015 24.2 3.1 29 165-194 50-78 (142)
439 2ppt_A Thioredoxin-2; thiredox 27.7 15 0.00052 27.7 0.5 28 4-32 15-43 (155)
440 3k8u_A Putative ABC transporte 27.7 1.2E+02 0.0039 22.7 5.6 37 142-179 8-44 (156)
441 3dn7_A Cyclic nucleotide bindi 27.5 13 0.00044 28.7 0.0 29 163-192 165-193 (194)
442 1y02_A CARP2, FYVE-ring finger 27.4 31 0.0011 25.6 2.1 30 4-37 20-49 (120)
443 3bd1_A CRO protein; transcript 27.4 89 0.003 20.2 4.4 41 168-225 13-55 (79)
444 2v79_A DNA replication protein 27.2 1.9E+02 0.0064 21.4 6.6 33 161-194 45-78 (135)
445 3knw_A Putative transcriptiona 27.0 84 0.0029 23.7 4.8 42 147-189 15-56 (212)
446 1fc3_A SPO0A; response regulat 27.0 1.9E+02 0.0063 21.3 6.4 58 168-226 50-118 (120)
447 2gwr_A DNA-binding response re 26.9 87 0.003 24.7 5.1 43 155-198 161-208 (238)
448 2gag_D Heterotetrameric sarcos 26.9 9 0.00031 27.6 -0.9 11 1-11 1-11 (99)
449 3df8_A Possible HXLR family tr 26.8 1.3E+02 0.0044 21.2 5.5 29 165-194 39-70 (111)
450 2k2d_A Ring finger and CHY zin 26.8 13 0.00044 25.6 -0.1 11 23-33 37-47 (79)
451 2gen_A Probable transcriptiona 26.8 1.2E+02 0.0039 23.0 5.6 40 147-188 8-48 (197)
452 2dg7_A Putative transcriptiona 26.5 72 0.0024 24.0 4.3 41 147-189 8-49 (195)
453 2bx9_A Anti-trap, AT, tryptoph 26.4 30 0.001 21.7 1.6 21 4-30 10-30 (53)
454 1z7u_A Hypothetical protein EF 26.3 97 0.0033 21.8 4.7 29 165-194 34-63 (112)
455 1b0n_A Protein (SINR protein); 26.3 98 0.0033 21.2 4.7 45 166-226 14-59 (111)
456 1vd4_A Transcription initiatio 26.3 24 0.00082 21.9 1.2 30 5-34 16-50 (62)
457 3lhq_A Acrab operon repressor 26.3 77 0.0026 23.9 4.5 39 148-188 16-55 (220)
458 1jhf_A LEXA repressor; LEXA SO 26.2 1.3E+02 0.0044 23.4 5.9 41 154-195 13-54 (202)
459 1pb6_A Hypothetical transcript 26.2 96 0.0033 23.4 5.0 40 148-189 20-60 (212)
460 3jsj_A Putative TETR-family tr 26.2 1E+02 0.0034 22.9 5.1 41 146-188 9-49 (190)
461 3f0c_A TETR-molecule A, transc 26.0 97 0.0033 23.5 5.1 40 147-188 12-52 (216)
462 3lwj_A Putative TETR-family tr 25.9 80 0.0027 23.7 4.5 40 148-189 14-54 (202)
463 3ivp_A Putative transposon-rel 25.7 1.1E+02 0.0038 21.7 5.0 45 166-226 25-69 (126)
464 3iwf_A Transcription regulator 25.7 63 0.0022 23.1 3.5 25 166-191 35-59 (107)
465 2jvl_A TRMBF1; coactivator, he 25.6 1.7E+02 0.0058 20.3 6.2 49 164-228 47-95 (107)
466 2zcm_A Biofilm operon icaabcd 25.6 1.3E+02 0.0045 22.3 5.7 39 148-188 9-48 (192)
467 2g7g_A RHA04620, putative tran 25.5 75 0.0026 24.9 4.4 41 146-189 11-51 (213)
468 2d6y_A Putative TETR family re 25.4 1.4E+02 0.0047 22.7 5.9 40 148-189 10-50 (202)
469 3f6o_A Probable transcriptiona 25.3 78 0.0027 22.5 4.0 29 164-193 29-57 (118)
470 2owo_A DNA ligase; protein-DNA 25.2 43 0.0015 32.3 3.2 33 4-38 406-441 (671)
471 1ptq_A Protein kinase C delta 25.2 42 0.0014 20.1 2.1 29 4-35 12-40 (50)
472 2v57_A TETR family transcripti 25.1 50 0.0017 24.7 3.1 38 148-188 16-53 (190)
473 3boq_A Transcriptional regulat 25.1 49 0.0017 24.5 3.0 31 163-194 59-89 (160)
474 1sfu_A 34L protein; protein/Z- 25.1 93 0.0032 21.0 4.0 31 166-197 29-59 (75)
475 2gmg_A Hypothetical protein PF 24.9 65 0.0022 23.3 3.3 34 163-197 21-58 (105)
476 3kz9_A SMCR; transcriptional r 24.8 91 0.0031 23.3 4.6 39 148-188 19-58 (206)
477 4a5n_A Uncharacterized HTH-typ 24.8 1.5E+02 0.005 22.0 5.5 30 164-194 37-67 (131)
478 3f3x_A Transcriptional regulat 24.6 97 0.0033 22.3 4.6 26 168-194 52-77 (144)
479 3he0_A Transcriptional regulat 24.5 84 0.0029 23.4 4.4 41 146-188 11-52 (196)
480 2g7s_A Transcriptional regulat 24.5 77 0.0026 23.4 4.1 39 148-188 10-49 (194)
481 2g45_A Ubiquitin carboxyl-term 24.5 41 0.0014 25.2 2.3 21 5-33 36-56 (129)
482 2fq4_A Transcriptional regulat 24.5 1E+02 0.0035 23.1 4.9 40 148-189 14-54 (192)
483 2fxa_A Protease production reg 24.4 96 0.0033 24.5 4.8 28 166-194 62-89 (207)
484 1rqg_A Methionyl-tRNA syntheta 24.4 33 0.0011 33.2 2.3 23 4-33 141-163 (722)
485 3hsr_A HTH-type transcriptiona 24.3 64 0.0022 23.3 3.5 30 164-194 48-77 (140)
486 3s5r_A Transcriptional regulat 24.2 1.1E+02 0.0038 23.1 5.1 40 147-188 11-51 (216)
487 3bqy_A Putative TETR family tr 24.2 87 0.003 24.5 4.5 42 147-189 3-44 (209)
488 3dpj_A Transcription regulator 24.1 1.1E+02 0.0037 22.8 4.9 40 147-188 9-49 (194)
489 3on4_A Transcriptional regulat 24.1 89 0.0031 23.0 4.4 40 147-188 11-51 (191)
490 2qwt_A Transcriptional regulat 24.0 1E+02 0.0034 23.3 4.8 38 149-188 16-53 (196)
491 3kor_A Possible Trp repressor; 24.0 70 0.0024 23.7 3.5 24 167-191 76-99 (119)
492 2oqr_A Sensory transduction pr 23.9 88 0.003 24.4 4.5 43 155-198 164-211 (230)
493 3trb_A Virulence-associated pr 23.9 1.3E+02 0.0044 21.1 4.9 47 164-226 25-71 (104)
494 3rh2_A Hypothetical TETR-like 23.9 80 0.0027 24.1 4.2 39 148-188 5-44 (212)
495 2q24_A Putative TETR family tr 23.9 1.3E+02 0.0044 22.5 5.4 39 148-188 17-55 (194)
496 1z4h_A TORI, TOR inhibition pr 23.8 67 0.0023 20.5 3.1 23 167-190 11-33 (66)
497 4cpa_I Metallocarboxypeptidase 23.8 16 0.00054 21.0 -0.1 22 7-29 6-27 (38)
498 3dcf_A Transcriptional regulat 23.7 93 0.0032 23.5 4.5 39 148-188 33-72 (218)
499 1pdn_C Protein (PRD paired); p 23.7 1E+02 0.0035 21.4 4.5 27 167-194 34-60 (128)
500 3bru_A Regulatory protein, TET 23.7 96 0.0033 23.6 4.6 39 148-188 32-71 (222)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=2.1e-56 Score=404.86 Aligned_cols=225 Identities=33% Similarity=0.519 Sum_probs=173.3
Q ss_pred CCCCCCCCC-CCceEEecCCCceEcCcCceeecccccccCcccccccCCC-CCCCCcccCCCCCccccCCCcceEEecCC
Q 025357 3 DSYCADCKR-LTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (254)
Q Consensus 3 ~~~Cp~Cg~-~~~lv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~d~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (254)
...||+||+ ++++++|+++|++||++||+|++|++||.|||||+|++++ ++.|++|+|+|.++++||.|++|.|++++
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 468999996 3689999999999999999999999999999999999655 46889999999999999999999999764
Q ss_pred CCCCccccccccccccccC--CCchhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 025357 81 AGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI 158 (254)
Q Consensus 81 ~~~~~~~l~~~l~~~~~~~--~~~~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~ 158 (254)
++++ ....+|++||+++ +++||+|.+|+++|.++|+.|+||+.+.++|..||+++.+.++++||+.++++|||||+
T Consensus 101 -~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYi 178 (345)
T 4bbr_M 101 -TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI 178 (345)
T ss_dssp -SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHH
T ss_pred -Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHH
Confidence 2221 1234588899875 77899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhccccc------ccCCCCHHHHHHHHHhhcCCCcchhhe
Q 025357 159 ACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSV------EMGTIHASDYLVIFLLNIFKNFFFLFV 230 (254)
Q Consensus 159 AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~------~~~~~~p~~~i~r~~~~L~l~~~v~~v 230 (254)
|||+++.|+|++||+++ +++++++|+++|+.|.+.|++...+.+ .+++++|++||+|||++|+|+.+|...
T Consensus 179 ACR~~~~prtl~eI~~~-~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~ 255 (345)
T 4bbr_M 179 GCRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTS 255 (345)
T ss_dssp HHHHTCCBCCHHHHHHH-HTCCTTHHHHHHHHHHHCC-----------------------------------------
T ss_pred HHHhcCCCccHHHHHHH-hCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999995 899999999999999999998632221 267889999999999999999998873
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-52 Score=376.79 Aligned_cols=223 Identities=33% Similarity=0.522 Sum_probs=163.3
Q ss_pred CCCCCCCCCCC-ceEEecCCCceEcCcCceeecccccccCcccccccCCC-CCCCCcccCCCCCccccCCCcceEEecCC
Q 025357 3 DSYCADCKRLT-EVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLLSGGGLSTVIAKPT 80 (254)
Q Consensus 3 ~~~Cp~Cg~~~-~lv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~d~~r~G~~~~~~~~~~~~~t~i~~~~ 80 (254)
...||+||+.+ ++++|+.+|++||++||+|++|++||.+||||+|++++ ++.+++|+|+|.++++||.|++|.|++++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46899999832 79999999999999999999999999999999999653 46789999999999999999999998753
Q ss_pred -CCCCccccccccccccccC--CCchhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 025357 81 -AGGSTELLSGSLGKLQARS--SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLY 157 (254)
Q Consensus 81 -~~~~~~~l~~~l~~~~~~~--~~~~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY 157 (254)
.++++ .++|++||++. +++||+|.+|+++|+++|+.|+||+.++++|..||+++.+.++++||+.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 23333 23588888753 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcc------cccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 158 IACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG------QSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 158 ~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~------~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
+|||+++.|++++||+.+ +++++++|+++|+.|.+.|+.... ..+.+++.+|.+||+|||++|+|+.++..
T Consensus 178 iAcR~e~~prtl~ei~~~-~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~ 254 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSL-IHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTT 254 (345)
T ss_dssp TTSBTTBSSCCHHHHHHS-SSCCSHHHHHHHHHHHHHHTCC-------------------------------------
T ss_pred HHHHHcCCCccHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999995 899999999999999999982100 00227889999999999999999988866
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.93 E-value=4.7e-26 Score=191.04 Aligned_cols=123 Identities=28% Similarity=0.493 Sum_probs=114.3
Q ss_pred CCchhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCC
Q 025357 100 SHPDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179 (254)
Q Consensus 100 ~~~~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v 179 (254)
+++||+|.+|+++|.++|++|+||+.+.++|..+|+++.+.++++|++++.++|||||+|||+++.|++++||+++ +++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~-~~v 81 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADI-ARV 81 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHH-TTS
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHH-HCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred CHHHHHHHHHHHHHHhchhcccccccCC--CCHHHHHHHHHhhcCCCcchhh
Q 025357 180 TKKEIGRAKEFIVKHLEAEMGQSVEMGT--IHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 180 ~~~~i~~~~k~l~~~l~~~~~~~~~~~~--~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
++++|+++|+.|.+.|++. +++ .+|.+||+|||++|++++++..
T Consensus 82 ~~~~i~~~~~~l~~~L~~~------~~~~~~~p~~~i~r~~~~L~l~~~v~~ 127 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLT------PKKLFVKPTDYVNKFADELGLSEKVRR 127 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCC------TTTTCCCGGGGHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc------CCcCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999987 788 9999999999999999988765
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.90 E-value=2.8e-23 Score=175.07 Aligned_cols=122 Identities=44% Similarity=0.745 Sum_probs=116.8
Q ss_pred chhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCH
Q 025357 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTK 181 (254)
Q Consensus 102 ~~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~ 181 (254)
+||++.+|+++|.++|.+|+||+.+.++|..+|+++.+.+.++|+++..++|||+|+|||.++.|++++||+.+ ++++.
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~-~~~~~ 79 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAV-SRISK 79 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SSSCH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred HHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhhe
Q 025357 182 KEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFV 230 (254)
Q Consensus 182 ~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~v 230 (254)
++|+++|+.|.+.|+++ +++.+|..||.||++.|+++.++...
T Consensus 80 ~~i~~~~~~ll~~L~~~------l~~~~p~~~l~r~~~~l~l~~~~~~~ 122 (207)
T 1c9b_A 80 KEIGRCFKLILKALETS------VDLITTGDFMSRFCSNLCLPKQVQMA 122 (207)
T ss_dssp HHHHHHHHHHHHHTTCC------CCCCCTHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC------cCcCCHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999987 78899999999999999999887664
No 5
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.4e-20 Score=146.86 Aligned_cols=65 Identities=32% Similarity=0.623 Sum_probs=57.6
Q ss_pred CCCCCCCCCC-CceEEecCCCceEcCcCceeecccccccCcccccccCCC-CCCCCcccCCCCCccc
Q 025357 3 DSYCADCKRL-TEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANES-SDHDPVRVGGPLNPLL 67 (254)
Q Consensus 3 ~~~Cp~Cg~~-~~lv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~d~~r~G~~~~~~~ 67 (254)
...||+||+. +++++|+++|++||.+||+|++|++||.|||||+|++++ ++.+++|+|+|.++..
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~ 87 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXX 87 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCccccccccccccccccccc
Confidence 4579999982 479999999999999999999999999999999999754 4678999999988654
No 6
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.73 E-value=1.8e-18 Score=116.45 Aligned_cols=47 Identities=43% Similarity=0.777 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeecccccccCcccccccCC
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFANE 50 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~ 50 (254)
.+.||+||+ ..+++|+.+|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 458999998 67999999999999999999999999999999999854
No 7
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.63 E-value=1.8e-15 Score=126.45 Aligned_cols=90 Identities=27% Similarity=0.391 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
+...+|.++++.|+||+.+.+.|..|++.+.+.++..||+|.++||||||+|||..|.|+|++||+.+ +++++.+|+++
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~-~~vs~~ti~~~ 185 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEV-ARVTEVTVRNR 185 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-HTCCHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH-hCCCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHhchh
Q 025357 188 KEFIVKHLEAE 198 (254)
Q Consensus 188 ~k~l~~~l~~~ 198 (254)
|++|.+.|+++
T Consensus 186 ~~~l~~~l~~~ 196 (200)
T 1ais_B 186 YKELVEKLKIK 196 (200)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999999987
No 8
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.61 E-value=8.9e-15 Score=125.28 Aligned_cols=118 Identities=24% Similarity=0.301 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc-------
Q 025357 106 LIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG-RNQEAIVAACLYIACRQENKPRTVKEFCSVAN------- 177 (254)
Q Consensus 106 l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~G-r~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~------- 177 (254)
...+.++|.+++..|+||..+..+|..+|+++...+.+++ +++..+++||+|+|||.++.|++++||+.++.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 5678899999999999999999999999999999888888 99999999999999999999999999988632
Q ss_pred CCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 178 GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 178 ~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
..+.++|.++.+.|.+.|+.+ +...+|..||.+|++++++++++..
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~~l~~~~~~~~~~~~~~~ 153 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAF------LIVHHPYTSLEQAFHDGIINQKQLE 153 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC------CCCCCTHHHHHHHHHTTSSCHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCc------EEecChHHHHHHHHHHcCCCHHHHH
Confidence 578999999999999999988 7788999999999999999887654
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.60 E-value=6.3e-16 Score=101.08 Aligned_cols=44 Identities=34% Similarity=0.940 Sum_probs=42.0
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccccccCccccccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYSVDETSEWRIFA 48 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~ 48 (254)
..||+||+ ..|++|+.+|++||..||+|++++.||.+||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999998 689999999999999999999999999999999997
No 10
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.48 E-value=1.7e-13 Score=114.95 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
+...+|.++++.|++|+.+.+.|..+++.+.+.++..|++|..+||||||+||+..|.+++++||+++ ++|++.+|+++
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~-~~v~~~tI~~~ 179 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDI-AGVADVTIRQS 179 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHH-HTCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH-hCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHhchh
Q 025357 188 KEFIVKHLEAE 198 (254)
Q Consensus 188 ~k~l~~~l~~~ 198 (254)
|+.|.+.++..
T Consensus 180 ~~~l~~~l~~~ 190 (207)
T 1c9b_A 180 YRLIYPRAPDL 190 (207)
T ss_dssp HHHHGGGHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.42 E-value=3.6e-12 Score=110.29 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc---------
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN--------- 177 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~--------- 177 (254)
..+.++|.+++..|+||..+..+|..+|++....+.++++++..+++||+|+||+.++.|++++||..++.
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999987521
Q ss_pred -CCC-------HHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 178 -GTT-------KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 178 -~v~-------~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
.++ .++|.+..+.|.+.|+.+ +...+|..||.+|+..++.+.++..
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~~~~~ 165 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFE------ITIEHPHTDVVKCTQLVRASKDLAQ 165 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccc------eEeeCcHHHHHHHHHHhCCCcHHHH
Confidence 122 678999999999999988 7788999999999999999887755
No 12
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.38 E-value=4.6e-12 Score=109.59 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcC-C------
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANG-T------ 179 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~-v------ 179 (254)
..+.++|.+++..|+||..+...|..+|++....+.++++++..+++||+|+||+.++.|++++||..++.. +
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999874211 1
Q ss_pred -----CHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCc
Q 025357 180 -----TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNF 225 (254)
Q Consensus 180 -----~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 225 (254)
+.++|.+..+.|.+.|+.+ +...+|..||.+|+..|+.+.
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~------l~~~~P~~fl~~~~~~l~~~~ 166 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFD------LQVEHPYQFLLKYAKQLKGDK 166 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTBCSCH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCc------eeccChHHHHHHHHHHhCCCc
Confidence 3678999999999999987 778899999999999999886
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.37 E-value=4.2e-12 Score=111.71 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHhc--------
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR-TVKEFCSVAN-------- 177 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~-tl~eIa~~~~-------- 177 (254)
..+.++|.+++.+|+||..+..+|..+|++....+.+++.++..+++||+|+||+.++.|+ +++||..++.
T Consensus 44 ~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 44 IFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 4678999999999999999999999999999999999999999999999999999999987 7889876421
Q ss_pred -------CCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 178 -------GTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 178 -------~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
..+.++|.+..+.|.+.|+.+ +...+|..||.+|+..|+++.++..
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~fL~~~~~~l~~~~~~~~ 176 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCC------LIVYHPYRPLLQYVQDMGQEDMLLP 176 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHHTCHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCC------eEeCChHHHHHHHHHHhCCCHHHHH
Confidence 146799999999999999988 7778999999999999998877655
No 14
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.32 E-value=1.5e-13 Score=124.09 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
+...+|.++|+.|+|+..+...|.+|.+++.+.+++.||+|.++||||||+|++.++.++|++||+++ ++|++.+|++.
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v-~~Vse~TIr~r 312 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHH-HCCCHHHHHHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHhchh
Q 025357 188 KEFIVKHLEAE 198 (254)
Q Consensus 188 ~k~l~~~l~~~ 198 (254)
|++|.+.++.-
T Consensus 313 ykel~~~~~~l 323 (345)
T 4bbr_M 313 YKILYEHRDKL 323 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.28 E-value=1.3e-11 Score=111.96 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc---------
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVAN--------- 177 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~--------- 177 (254)
..+.++|.+++..|+||..+..+|..||+++.....+++.++..+++||||+||+.+..|++++||..++.
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999986421
Q ss_pred -CC-------CHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 178 -GT-------TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 178 -~v-------~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
.+ ..++|.++.+.|.+.|+.+ +...+|..||.+|+..|+++.++..
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~------L~v~~P~~fL~~~~~~l~~~~~l~~ 172 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFE------LTIDHPHTHVVKCTQLVRASKDLAQ 172 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTC------CCCCCTTHHHHHHHHHTTCCHHHHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCc------eeCCCHHHHHHHHHHHcCCCHHHHH
Confidence 11 1567888889999999987 7788999999999999999887755
No 16
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.28 E-value=5.9e-11 Score=103.51 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc--CCCHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~--~v~~~~ 183 (254)
....++|.+++..++|+..+...|..++.+......+.+++...+++||+|+||+.++. |++++|+..+ + ..+.++
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~e 117 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHH
Confidence 45788999999999999999999999999999988889999999999999999999887 8999999985 4 378999
Q ss_pred HHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 184 i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
|.+..+.|.+.|+.+ +...+|.+||.||+..++++.++..
T Consensus 118 I~~mE~~IL~~L~f~------l~~~tp~~fl~~~~~~~~~~~~~~~ 157 (269)
T 2b9r_A 118 IRQMEMKILRALNFG------LGRPLPLHFLRRASKIGEVDVEQHT 157 (269)
T ss_dssp HHHHHHHHHHHTTSC------CCCCCHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHhcCCCHHHHH
Confidence 999999999999987 7788999999999999999877654
No 17
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.24 E-value=9.2e-11 Score=104.93 Aligned_cols=108 Identities=11% Similarity=0.181 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCC----
Q 025357 107 IQAFKSISAMSDRLG--LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTT---- 180 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~--Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~---- 180 (254)
..+..+|.++|..|+ ||..+..+|..+|++....+.+.+.++..+++||+|+||+.++.|++++||+.+ ...+
T Consensus 58 ~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~-~~~~p~~~ 136 (323)
T 1jkw_A 58 KYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGN-LRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGG-SSSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHH-hccChhhh
Confidence 466799999999999 999999999999999999999999999999999999999999999999999874 4444
Q ss_pred ---HHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhc
Q 025357 181 ---KKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221 (254)
Q Consensus 181 ---~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (254)
.++|.+..+.|.+.|+.. +.+.+|..||.+|+..|
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~------l~v~~P~~~L~~~l~~l 174 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFH------LIVHNPYRPFEGFLIDL 174 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC------CCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCc------EEcCChHHHHHHHHHHH
Confidence 578999999999999988 77889999999999876
No 18
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.20 E-value=1.5e-10 Score=100.42 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc--CCCHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKKE 183 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~--~v~~~~ 183 (254)
..+.++|.+++..++|+..+.-.|..++.+......+..++...+++||+|+||+.++. |++++|+..+ + ..+.++
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~ 118 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHH
Confidence 46789999999999999999999999999998887777788999999999999999998 9999999885 4 378999
Q ss_pred HHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCc-chhh
Q 025357 184 IGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNF-FFLF 229 (254)
Q Consensus 184 i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~ 229 (254)
|.+..+.|.+.|+.+ +.+.+|.+||.+|+..++++. ++..
T Consensus 119 i~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~~~~ 159 (260)
T 2cch_B 119 VLRMEHLVLKVLTFD------LAAPTVNQFLTQYFLHQQPANCKVES 159 (260)
T ss_dssp HHHHHHHHHHHTTTC------CCCCCHHHHHHHHHTTCSSCCHHHHH
T ss_pred HHHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChHHHHH
Confidence 999999999999988 778899999999999999876 5544
No 19
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.18 E-value=3.6e-10 Score=98.56 Aligned_cols=115 Identities=13% Similarity=0.236 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh-cCCCHHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVA-NGTTKKEI 184 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~-~~v~~~~i 184 (254)
....++|.+++..++++..+.-.|..++.+......+..++...+++||+|+||+.++. |++++|++.+. ...+.++|
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 46788999999999999999999999999999888888889999999999999999998 99999998852 23789999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.+..+.|.+.|+.. +.+.+|..||.+|+..|+++.+.
T Consensus 138 ~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~l~~~~~~ 174 (271)
T 2w96_A 138 LQMELLLVNKLKWN------LAAMTPHDFIEHFLSKMPEAEEN 174 (271)
T ss_dssp HHHHHHHHHHTTTC------CCCCCHHHHHHHHHHTSCCCHHH
T ss_pred HHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCchH
Confidence 99999999999988 78889999999999999998765
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.5e-12 Score=115.17 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
+...+|.++|+.|+|+..+...|.+|.+.+.+.++..||+|.++||||||+|++..+.+++++||+++ ++|++.+|++.
T Consensus 234 ~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~-~~Vse~TIr~~ 312 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQT-LQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHhc
Q 025357 188 KEFIVKHLE 196 (254)
Q Consensus 188 ~k~l~~~l~ 196 (254)
|++|.+.+.
T Consensus 313 ykel~~~~~ 321 (345)
T 3k7a_M 313 YKILYEHRD 321 (345)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998875
No 21
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.09 E-value=1.4e-09 Score=94.05 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHh-cCCCHHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVA-NGTTKKEI 184 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~-~~v~~~~i 184 (254)
....++|.+++..++|+..+.-.|..++.+......+++++...+++||+|+||+.+.. |.+++|++.+. ...+.++|
T Consensus 52 ~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 52 KLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 45689999999999999999999999999999988888889999999999999997765 99999998852 23789999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.+..+.|.+.|+.. +...+|..|+.+|+..++++.+.
T Consensus 132 ~~mE~~iL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 132 IDQEKELLEKLAWR------TEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp HHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHSCSSTT
T ss_pred HHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhH
Confidence 99999999999988 77889999999999999998764
No 22
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.08 E-value=1.6e-09 Score=95.03 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhC-CCCCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc--CCCHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ-KPLRGRNQEAIVAACLYIACRQENK-PRTVKEFCSVAN--GTTKK 182 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~-~~~~Gr~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~--~v~~~ 182 (254)
....++|.+++..++++..+.-.|..++.+.... ..+++++...+++||+|+||+.++. |.+++|++.+ + ..+.+
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ 129 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHH
Confidence 4568899999999999999999999999999886 5788899999999999999999976 8999999885 4 47899
Q ss_pred HHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 183 EIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 183 ~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
+|.+..+.|.+.|+.. +.+++|.+||.+|+..++++...
T Consensus 130 ei~~mE~~IL~~L~~~------l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 130 EILTMELMIMKALKWR------LSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp HHHHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHcCCc------CCCCCHHHHHHHHHHHhccCchh
Confidence 9999999999999988 77889999999999999987654
No 23
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.98 E-value=3.4e-09 Score=91.43 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHh-cCCCHHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVA-NGTTKKEI 184 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~-~p~tl~eIa~~~-~~v~~~~i 184 (254)
....++|.+++..++|+..+.-.|..++.+......+++++...+++||+|+||+.+. .|.+++|++.+. ...+.++|
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 4568899999999999999999999999999998888999999999999999999976 599999997641 23689999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.+..+.|.+.|+.+ +..++|.+|+.+|+..++++.+.
T Consensus 133 ~~mE~~IL~~L~~~------l~~~tp~~fl~~~~~~~~~~~~~ 169 (254)
T 2f2c_A 133 INQEKDILEALKWD------TEAVLATDFLIPLCNALKIPEDL 169 (254)
T ss_dssp HHHHHHHHHHTTTC------CCCCCGGGSHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHCCCc------CCCCCHHHHHHHHHHHcCCChhh
Confidence 99999999999988 77889999999999999998764
No 24
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.79 E-value=3.9e-08 Score=87.15 Aligned_cols=115 Identities=12% Similarity=0.186 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhc-CCCCCHHHHHHHh-cCCCHHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE-NKPRTVKEFCSVA-NGTTKKEI 184 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~-~~p~tl~eIa~~~-~~v~~~~i 184 (254)
..+.++|.+++..++|+..+.-.|..++.+......+.......++++|+|+||+.+ ..|.++.++..+. ...+..+|
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i 151 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQL 151 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHH
Confidence 467899999999999999999999999999998888888899999999999999975 4688999998752 23689999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.+.-+.|.+.|+.. +...+|..||.+|+..++++.+.
T Consensus 152 ~~mE~~IL~~L~f~------l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 152 RDWEVLVLGKLKWD------LAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp HHHHHHHHHHTTTC------CCCCCGGGGHHHHHHTSSCCTTT
T ss_pred HHHHHHHHHHcCCc------cCCCCHHHHHHHHHHHcCCChhH
Confidence 99999999999988 77889999999999999987653
No 25
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=98.40 E-value=7.3e-07 Score=73.21 Aligned_cols=114 Identities=23% Similarity=0.358 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG---RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~G---r~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i 184 (254)
.+...|.++..+-++|+.+.+.|.++.+......--+| -++..+||||+.+|+.+.+.|+++.|+-.....+...++
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvel 93 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVEL 93 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHH
Confidence 35677899999999999999999999999876443344 367899999999999999999999999665334444445
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCC
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKN 224 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~ 224 (254)
++. +|.+.++++.... ++...-..++|..|+.+|+|.
T Consensus 94 rr~--Eiv~~l~l~e~e~-rl~~~~~~NLl~~Yv~kL~Lq 130 (260)
T 3h4c_A 94 RRA--DIVRELHLEDSER-RLRDTFADNLLVKYILKLGLQ 130 (260)
T ss_dssp HHH--HHHHHTTCHHHHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHH--HHHHHccCCHHHH-HHHHHhhhhHHHHHHHHhccc
Confidence 444 8888888764211 122334578899999999885
No 26
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.38 E-value=5.6e-06 Score=71.29 Aligned_cols=115 Identities=11% Similarity=0.021 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHh-cCCCHHHH
Q 025357 107 IQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQEN-KPRTVKEFCSVA-NGTTKKEI 184 (254)
Q Consensus 107 ~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~-~p~tl~eIa~~~-~~v~~~~i 184 (254)
....++|-+++..++|+..+.-.|..++.+......+.......++++|+|+|++.+. .|.++.++.... ...+..+|
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i 129 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKL 129 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHH
Confidence 3568899999999999999999999999999887777777889999999999999765 488999998752 34689999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.+.-+.|.+.|+.+ +..++|..|+.+|...++.+.+.
T Consensus 130 ~~mE~~IL~~L~w~------l~~pTp~~FL~~~l~~~~~~~~~ 166 (252)
T 1f5q_B 130 LTLEVKSLDTLSWV------ADRCLSTDLICYILHIMHAPRED 166 (252)
T ss_dssp HHHHHHHHHHTTTC------CCCCCHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCc------cCCCCHHHHHHHHHHHcCCCcch
Confidence 99999999999988 77889999999999999987654
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.90 E-value=1.8e-05 Score=67.06 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
...++|.+++..+++++.+...|..+...+......-|.+|..+||||||+|++..+.+.+ .+.... .++++.+|..+
T Consensus 133 ~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~-~~~~~~-~~~~~~~i~~~ 210 (235)
T 1zp2_A 133 HPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP-KLLDLI-KSTDAFKVILC 210 (235)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH-HHHHHC-CHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC-CCcchh-hcCCHHHHHHH
Confidence 3567899999999999999999999999998877788999999999999999999886543 345453 47899999999
Q ss_pred HHHHHHHhchh
Q 025357 188 KEFIVKHLEAE 198 (254)
Q Consensus 188 ~k~l~~~l~~~ 198 (254)
++.|.+.....
T Consensus 211 ~~~i~~ly~~~ 221 (235)
T 1zp2_A 211 VQRIISIYYFE 221 (235)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHHhhC
Confidence 99999876543
No 28
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.90 E-value=3e-05 Score=66.77 Aligned_cols=89 Identities=9% Similarity=-0.047 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhccCCCH-HHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHH
Q 025357 108 QAFKSISAMSDRLGLVT-TIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIG 185 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~-~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~ 185 (254)
...++|.+++..++++. .+...|..+..... +...+-+.+|..+||||+|+|++..+.+....+++.+ +|+++.+|.
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~-~g~~~~~i~ 216 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRK-TGYTLESLK 216 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HCCCHHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHH-hCcCHHHHH
Confidence 46789999999999986 78888888887754 4432567899999999999999988878888889885 899999999
Q ss_pred HHHHHHHHHhch
Q 025357 186 RAKEFIVKHLEA 197 (254)
Q Consensus 186 ~~~k~l~~~l~~ 197 (254)
.+++.|.+.+..
T Consensus 217 ~~~~~l~~~~~~ 228 (260)
T 2cch_B 217 PCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.88 E-value=1.5e-05 Score=69.11 Aligned_cols=88 Identities=8% Similarity=-0.034 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
...++|.+++..++++..+...|..+...+.....+-+.+|..+||||+|+|++..+.+....++..+ +|+++.+|..+
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~-tg~~~~~l~~~ 215 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHY-LSYTEESLLPV 215 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHH-SCCCSSTTTTH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHH-HCCCHHHHHHH
Confidence 45688999999999999999999999888776566678999999999999999999887777788885 89999999999
Q ss_pred HHHHHHHhc
Q 025357 188 KEFIVKHLE 196 (254)
Q Consensus 188 ~k~l~~~l~ 196 (254)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=97.70 E-value=0.00011 Score=63.57 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCCCHHHH----HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC---------CCCHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIK----DRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK---------PRTVKEFCS 174 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~----e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~---------p~tl~eIa~ 174 (254)
..+++|.++...++++.... ..|..+...+.....+-+.+|..+||||||+|++..+. +.+..+++.
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 46788999999999987653 45666666554333345789999999999999986542 234678888
Q ss_pred HhcCCCHHHHHHHHHHHHHHhchh
Q 025357 175 VANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 175 ~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
+ +|+++.+|+.+++.|.+.++..
T Consensus 236 ~-~~v~~~~l~~c~~~i~~l~~~~ 258 (271)
T 2w96_A 236 V-IKCDPDCLRACQEQIEALLESS 258 (271)
T ss_dssp H-HTSCHHHHHHHHHHHHHHHTTT
T ss_pred H-HCcCHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999999998866
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.68 E-value=0.00023 Score=62.04 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
+.+++|.+++..|+++..+...|..+..........-+..|..+||||||+|++..+.+. ...... ++++..+|..+
T Consensus 156 ~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~-~~~~~~~l~~~ 232 (285)
T 3rgf_B 156 HPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAE-LSVDMEKILEI 232 (285)
T ss_dssp CSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHT-SCSCHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHH-HCCCHHHHHHH
Confidence 346789999999999999999999999988776666788999999999999999988754 456664 89999999999
Q ss_pred HHHHHHHhchhcccccccCCCCHHHHHHHHHhhc
Q 025357 188 KEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221 (254)
Q Consensus 188 ~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (254)
++.|....... +..+...=|+++..++
T Consensus 233 ~~~il~ly~~~-------~~~~~~~~~~~~~~k~ 259 (285)
T 3rgf_B 233 IRVILKLYEQW-------KNFDERKEMATILSKM 259 (285)
T ss_dssp HHHHHHHHHHH-------HHCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc-------ccCchhhhHHHHHHhC
Confidence 99998877653 1123334455555554
No 32
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.57 E-value=0.00015 Score=62.11 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhccCCCH----HHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHH-------HH-
Q 025357 108 QAFKSISAMSDRLGLVT----TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFC-------SV- 175 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~----~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa-------~~- 175 (254)
....+|.+++..|+.+. .+...|..+...+......-+.+|..+||||||+|++..|.+++..+.. ..
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 45778999999999987 5788888888888777777789999999999999999998765543221 21
Q ss_pred hcCCCHHHHHHHHHHHHHHhchh
Q 025357 176 ANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 176 ~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..++++.+|...++.|.+.+...
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTSSS
T ss_pred ccCCCHHHHHHHHHHHHHHHhcc
Confidence 14899999999999998877643
No 33
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.47 E-value=0.00037 Score=59.61 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHH----HHHHH-hcCCCH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVK----EFCSV-ANGTTK 181 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~-~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~----eIa~~-~~~v~~ 181 (254)
+.+.+|.+++..++.+..+...|..+..... ...+.-+..|..+||||+|+|++..|.+++.. ..... ..++++
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 4578899999999999999999999887765 45656789999999999999999988654431 12221 137899
Q ss_pred HHHHHHHHHHHHHhc
Q 025357 182 KEIGRAKEFIVKHLE 196 (254)
Q Consensus 182 ~~i~~~~k~l~~~l~ 196 (254)
.+|...++.|.+.+.
T Consensus 225 ~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 225 ELLDELTHEFLQILE 239 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988774
No 34
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=97.47 E-value=0.00039 Score=59.48 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=66.6
Q ss_pred HHHHHHHHHhccCCCHHH----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhc-CCCCC----HHHHHHHhcCC
Q 025357 109 AFKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQE-NKPRT----VKEFCSVANGT 179 (254)
Q Consensus 109 a~~~I~~i~~~L~Lp~~v----~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~-~~p~t----l~eIa~~~~~v 179 (254)
..+++.++...++++... ...|..+.....-...+-+.+|..+||||+|+|.+.. +.|.+ ..+++.+ +|+
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-tg~ 230 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-LNF 230 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HCc
Confidence 356788888889888653 3456666655543333467899999999999999986 44555 7888885 899
Q ss_pred CHHHHHHHHHHHHHHhc
Q 025357 180 TKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 180 ~~~~i~~~~k~l~~~l~ 196 (254)
++.+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=97.37 E-value=0.00047 Score=59.08 Aligned_cols=89 Identities=16% Similarity=0.022 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhccCCCHHH----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCC------CCCHHHHHHHhc
Q 025357 108 QAFKSISAMSDRLGLVTTI----KDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENK------PRTVKEFCSVAN 177 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v----~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~------p~tl~eIa~~~~ 177 (254)
...+++.++...++++... ...|..+.....-...+-+.+|..+||||+|+|.+..+. +....+++.+ +
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~-t 228 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASI-L 228 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHH-H
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHH-H
Confidence 4677899999999887643 455666666554444456789999999999999988874 3557788885 8
Q ss_pred CCCHHHHHHHHHHHHHHhch
Q 025357 178 GTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 178 ~v~~~~i~~~~k~l~~~l~~ 197 (254)
|+++.+|..+++.|.+.+.-
T Consensus 229 ~~~~~~l~~c~~~i~~l~~~ 248 (257)
T 1g3n_C 229 GCDVSVLQAAVEQILTSVSD 248 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0028 Score=46.00 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCC------CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRG------RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGR 186 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~G------r~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~ 186 (254)
|+++|-.||.++ +++.|.+++.+.... +..+ -+....+||++|.+||..+..+.-..+.. .+|+++..+.+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~-~s~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVA-TSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHH-TTCBCHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHH-HHCCCHHHHHH
Confidence 788999999997 778888887776532 2211 13457889999999999999999999989 59999999998
Q ss_pred HHHHHHHHh
Q 025357 187 AKEFIVKHL 195 (254)
Q Consensus 187 ~~k~l~~~l 195 (254)
....+.+..
T Consensus 83 l~~~~e~~~ 91 (95)
T 3m03_A 83 LCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 37
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=97.04 E-value=0.00057 Score=46.99 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
+...||.|++ .+.++..+|+++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCcee
Confidence 4578999997 58899999999999999985
No 38
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.97 E-value=0.00065 Score=46.43 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
+...||.|++ .+.++...|+++|..||.+.
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 4578999997 58899999999999999985
No 39
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.97 E-value=0.00067 Score=46.19 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
+...||.|++ .+.+|..+|+++|..||.+.
T Consensus 9 eiL~CP~ck~--~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKG--PLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCC--cCeEeCCCCEEEcCCCCccc
Confidence 3467999997 58899999999999999985
No 40
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.86 E-value=0.00035 Score=46.95 Aligned_cols=31 Identities=32% Similarity=0.776 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
+.+||.|+. ..+|++..+-.+.|..||.+|-
T Consensus 7 ~VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 7 KVKCPDCEH-EQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EEECTTTCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCC-ceEEEecCceEEEcccCCCEEe
Confidence 368999998 7899999999999999999995
No 41
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.83 E-value=0.00068 Score=46.45 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
...||.|++ .+.++..+|+++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 468999997 58889899999999999985
No 42
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.78 E-value=0.00058 Score=46.66 Aligned_cols=29 Identities=34% Similarity=0.592 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
...||.|++ .+.++..+|+++|..||.+.
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKG--PLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCC--BCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCC--cCeEeCCCCEEEcCCCCcEe
Confidence 367999997 58899999999999999985
No 43
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.74 E-value=0.00048 Score=45.94 Aligned_cols=31 Identities=35% Similarity=0.751 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
+.+||.|+. ..+|+++.+-.+.|..||.+|-
T Consensus 15 ~VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 15 RVKCIDCGN-EQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EEECSSSCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCC-eeEEEecCCeEEEccCcCCEEe
Confidence 367999998 7899999999999999999995
No 44
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.71 E-value=0.00094 Score=60.15 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHH----HHHHH-hcCCCH
Q 025357 108 QAFKSISAMSDRLGLVTTIKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVK----EFCSV-ANGTTK 181 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~-~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~----eIa~~-~~~v~~ 181 (254)
+.+.+|.+++..|+++..+...|..+..... ...+.-+..|..+||||||+|++..+.+++.. ..... ..++++
T Consensus 152 ~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~ 231 (358)
T 2pk2_A 152 HPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTL 231 (358)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCH
Confidence 3467889999999999999999999888776 45555678999999999999999988654432 12221 136899
Q ss_pred HHHHHHHHHHHHHhch
Q 025357 182 KEIGRAKEFIVKHLEA 197 (254)
Q Consensus 182 ~~i~~~~k~l~~~l~~ 197 (254)
.+|...++.|.+.+.-
T Consensus 232 ~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 232 ELLDELTHEFLQILEK 247 (358)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987753
No 45
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=96.69 E-value=0.0049 Score=54.19 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHhccCCCHH----HHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCC-C----HHHHHHHhcCCC
Q 025357 110 FKSISAMSDRLGLVTT----IKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPR-T----VKEFCSVANGTT 180 (254)
Q Consensus 110 ~~~I~~i~~~L~Lp~~----v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~-t----l~eIa~~~~~v~ 180 (254)
+++|..+...++++.. +...|..+.....-...+-+.+|..+||||||+|.+..+... . ..++..+ +|++
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~-tg~~ 250 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI-TGTE 250 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH-HCCC
Confidence 4578888888888743 445566666654443345578899999999999999777432 2 2566674 8999
Q ss_pred HHHHHHHHHHHHHHhchh
Q 025357 181 KKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 181 ~~~i~~~~k~l~~~l~~~ 198 (254)
..+|..+++.|.+.+.-.
T Consensus 251 ~~~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 251 VDCLRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887643
No 46
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.68 E-value=0.00096 Score=47.38 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||+ +.++++..|.+.|..||.++....
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEECCS
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecCCE
Confidence 46999997 578999999999999999986443
No 47
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.57 E-value=0.00068 Score=47.45 Aligned_cols=31 Identities=29% Similarity=0.823 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
+.+||.|+. ..+|+++.+-.+.|..||.||-
T Consensus 32 ~VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 32 DVKCAQCQN-IQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp EEECSSSCC-EEEEETTCSSCEECSSSCCEEE
T ss_pred EeECCCCCC-eeEEEecCccEEEccCCCCEEe
Confidence 357999998 7899999999999999999995
No 48
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.38 E-value=0.00086 Score=46.98 Aligned_cols=31 Identities=29% Similarity=0.698 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
+.+||.|+. ..+|+++.+-.+.|..||.||-
T Consensus 34 ~VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 34 DVKCPGCLN-ITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp EEECTTSCS-CEEEESBCSSCCCCSSSCCCCE
T ss_pred EEECCCCCC-eeEEEecCCeEEEccccCCEEe
Confidence 367999998 7899999999999999999995
No 49
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.19 E-value=0.016 Score=50.24 Aligned_cols=80 Identities=14% Similarity=0.043 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 025357 108 QAFKSISAMSDRLGLVTT-----------IKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~-----------v~e~A~~i~k~~~-~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~ 175 (254)
...++|.+++..+++++. ....+..+..... +.. +-+.+|..+||||+|+|+. ..++..+
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~-~l~~~PS~iAaAai~la~~-------~~~l~~~ 221 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVD-CLEFPYGILAASALYHFSS-------SELMQKV 221 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGG-GGGSCHHHHHHHHHHHTSC-------HHHHHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhh-hhcCCHHHHHHHHHHHHHC-------hHHHHHH
Confidence 356788888887776532 2233444555443 333 5678999999999999863 5678785
Q ss_pred hcCCCHHHHHHHHHHHHHHhc
Q 025357 176 ANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 176 ~~~v~~~~i~~~~k~l~~~l~ 196 (254)
+|+++.+|..+++.|.....
T Consensus 222 -tg~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 222 -SGYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp -SCCCHHHHHHHHHHHHHHHH
T ss_pred -hCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999977654
No 50
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.11 E-value=0.0012 Score=46.68 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=28.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
.+||.|+. ..+|+.+.+-.+.|..||.||-
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCS
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEee
Confidence 67999998 7899999999999999999995
No 51
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.87 E-value=0.005 Score=39.34 Aligned_cols=28 Identities=21% Similarity=0.614 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
..||.||+ ..+..+ .....+|..||++.
T Consensus 20 k~CP~CG~-~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEEE-CSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEec-CCCeEECCCCCCEE
Confidence 46999998 444444 46899999999874
No 52
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.041 Score=48.26 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=53.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhC-C---CCCCCCHHHHHHHHHHHHHHh-cCCCCCHHHHHHHhcCCCHHHH
Q 025357 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQ-K---PLRGRNQEAIVAACLYIACRQ-ENKPRTVKEFCSVANGTTKKEI 184 (254)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~-~---~~~Gr~~~~iaAAclY~AcR~-~~~p~tl~eIa~~~~~v~~~~i 184 (254)
....+|..|+|++.+.++|-++|+.+... + ...|. .+..-.||||+||.. ++..+||..|.+ +++++..++
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr-~~~lsi~~F 80 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQK-NIEISVHKF 80 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHH-HHTCCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHH-HcCCCHHHH
Confidence 45678999999999999999999998774 2 23333 445555569999974 466799999999 488887765
No 53
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=95.53 E-value=0.04 Score=49.20 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHhh--CCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 025357 104 RNLIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSV 175 (254)
Q Consensus 104 r~l~~a~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~--~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~ 175 (254)
|...-|..+|..+|++|+++. .+.+.+-.++..+.. ..++++|-.+.+.-.|+|..||..+..++++||-..
T Consensus 213 Kvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~ 287 (347)
T 2r7g_A 213 KVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 287 (347)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 345568889999999998875 567777777777654 457899999999999999999999999999999873
No 54
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=95.30 E-value=0.049 Score=49.64 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHhh--CCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 025357 105 NLIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174 (254)
Q Consensus 105 ~l~~a~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~--~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~ 174 (254)
...-|..+|+.+|++|+++. .+.+..-.+|+.... ..++++|-.+.++-+|+|..|+..+..++++||..
T Consensus 278 vy~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~ 350 (411)
T 4ell_A 278 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 350 (411)
T ss_dssp HHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 33568899999999999875 566666666666544 45889999999999999999999999999999987
No 55
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=94.85 E-value=0.086 Score=50.75 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHhh--CCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 025357 104 RNLIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVED--QKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCS 174 (254)
Q Consensus 104 r~l~~a~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~--~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~ 174 (254)
|...-|..+|..+|++|+++. .+.+.+-.+++.+.. ..++++|-.+.++-.|+|..||..+..++.++|..
T Consensus 522 Kvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~ 595 (656)
T 4elj_A 522 KVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 595 (656)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 344568899999999998874 677777777777654 35889999999999999999999999999999977
No 56
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=94.79 E-value=0.026 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.671 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCceEEecCCCceEcC--cCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICS--ECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~--~CG~Vl 33 (254)
...||.|++ .+..+. |+++|. +||...
T Consensus 10 iL~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 457999997 476664 999999 999885
No 57
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=94.75 E-value=0.18 Score=44.48 Aligned_cols=78 Identities=8% Similarity=0.062 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCC--HHHHHHH-hcCCCHHHHHHHHHHHHHHhc
Q 025357 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRT--VKEFCSV-ANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 120 L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~t--l~eIa~~-~~~v~~~~i~~~~k~l~~~l~ 196 (254)
++.++.+...|..+...+......-+..|..+||||||+|++..+.+++ ..++-.. ..+.+...|..+.+.|...+.
T Consensus 181 ~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 181 LENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 3455677888888888876655556789999999999999999887543 2222110 134567778777777766654
Q ss_pred h
Q 025357 197 A 197 (254)
Q Consensus 197 ~ 197 (254)
.
T Consensus 261 ~ 261 (323)
T 1jkw_A 261 K 261 (323)
T ss_dssp T
T ss_pred c
Confidence 3
No 58
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=94.67 E-value=0.078 Score=40.34 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
+-.||.|++ ...-.| ...+||.+||.--
T Consensus 27 lP~CP~C~s-eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNS-EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCC-CCCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCC-cceEec--CCeEECCcccccc
Confidence 367999998 444444 5679999999765
No 59
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.49 E-value=0.017 Score=37.56 Aligned_cols=29 Identities=21% Similarity=0.591 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
+..||.||+ .. .+....+...|..||+..
T Consensus 18 ~~fCPkCG~-~~-~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGP-GV-FLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTT-TC-CCEECSSEEECTTTCCCE
T ss_pred cccCcCCCC-ce-eEeccCCEEECCCCCCEE
Confidence 467999998 33 333446799999999983
No 60
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=94.04 E-value=0.029 Score=40.77 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCceEEecC---------------------------CCceEcCcCceee
Q 025357 1 MADSYCADCKRLTEVVFDHS---------------------------AGDTICSECGLVL 33 (254)
Q Consensus 1 ~~~~~Cp~Cg~~~~lv~D~~---------------------------~G~~vC~~CG~Vl 33 (254)
|+...||.|+. .+..+.. +|.+||..||...
T Consensus 6 LdILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~Y 63 (97)
T 2k5r_A 6 LHLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVF 63 (97)
T ss_dssp CSSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEE
T ss_pred hhheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCc
Confidence 34578999997 4666655 7999999999985
No 61
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=93.50 E-value=0.43 Score=45.93 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhh-CCC----CCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHH
Q 025357 112 SISAMSDRLGLVTTIKDRANEIYKKVED-QKP----LRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEI 184 (254)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~-~~~----~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i 184 (254)
....+|..|++++.+.++|-+.|+.... .+. +.| ....+.|+++|.||+.+|..+||-.|.+ .++++..++
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr-~~~lsl~~F 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQK-NIEISVHKF 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHH-HHTCCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHH-HhcCCHHHH
Confidence 4678899999999999999999999984 222 233 4567777778888888999999999999 488887666
No 62
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=93.01 E-value=0.046 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=21.8
Q ss_pred CCCCCCCC-CceEEecCCCceEcCcCceee
Q 025357 5 YCADCKRL-TEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 5 ~Cp~Cg~~-~~lv~D~~~G~~vC~~CG~Vl 33 (254)
.||.||++ +.++.+...=.+-|..||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 69999996 456666555667799999873
No 63
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.62 E-value=0.1 Score=36.70 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=26.0
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||+ ..+ .-...|-+-|..||.++....
T Consensus 36 y~CpfCGk-~~v-kR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 36 HTCPVCGR-KAV-KRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp BCCSSSCS-SCE-EEEETTEEEETTTCCEEECCS
T ss_pred cCCCCCCC-cee-EecCcCeEEcCCCCCEEeCCc
Confidence 57999998 554 556799999999999987554
No 64
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.20 E-value=0.17 Score=37.70 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCceEEecCCC----ceEcCcCceeec
Q 025357 2 ADSYCADCKRLTEVVFDHSAG----DTICSECGLVLE 34 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G----~~vC~~CG~Vl~ 34 (254)
.+..||+||+ -+......| ..+|..||++..
T Consensus 3 ~m~FCp~Cgn--~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNN--MLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCC--CCEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCC--EeeEcccCCCCeeEEECCCCCCeEE
Confidence 3578999997 344443333 699999999863
No 65
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=91.12 E-value=0.23 Score=34.35 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 154 ACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 154 AclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
--|+-+.+..|.|....||++. +|++.++|.+++++|.+.-.+.
T Consensus 22 ekVLe~LkeaG~PlkageIae~-~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKE-CQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHH-HTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHH-HCCCHHHHHHHHHHHHHcCCcc
Confidence 3466788899999999999995 9999999999999999887765
No 66
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.05 E-value=0.14 Score=43.42 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
..||.||+.....++ ..|...|.+||.-
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 469999984456555 4688999999975
No 67
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=91.03 E-value=0.11 Score=35.77 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||. ..+ .-...|-+.|..||.++....
T Consensus 28 y~C~fCgk-~~v-kR~a~GIW~C~~C~~~~AGGA 59 (73)
T 1ffk_W 28 YKCPVCGF-PKL-KRASTSIWVCGHCGYKIAGGA 59 (73)
T ss_pred ccCCCCCC-cee-EEEEeEEEECCCCCcEEECCC
Confidence 56999998 454 445789999999999986554
No 68
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=90.80 E-value=0.13 Score=36.86 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=25.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
-.||.||+ ..+ .-...|-+-|..||.++...
T Consensus 37 y~CpfCgk-~~v-kR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGK-FAV-KRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCS-SCB-EEEETTEEECSSSCCEEECC
T ss_pred ccCcccCC-Cee-EecCcceEEcCCCCCEEeCC
Confidence 57999998 554 55679999999999998633
No 69
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.77 E-value=0.15 Score=37.22 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=24.9
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
-.||.||. .. +.-...|-+-|..||.++...
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEeCC
Confidence 46999998 55 455689999999999998633
No 70
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=90.67 E-value=0.14 Score=38.25 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||. ..+ .-...|-+-|..||.++....
T Consensus 61 ytCPfCGk-~~v-KR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 61 HACPNCGE-DRV-DRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp EECSSSCC-EEE-EEEETTEEEETTTCCEEECCS
T ss_pred CcCCCCCC-cee-EecCceeEECCCCCCEEECCC
Confidence 46999997 454 455789999999999986443
No 71
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=90.39 E-value=0.11 Score=35.48 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||. .. +.-...|-.-|..||.++....
T Consensus 27 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 27 YDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp BCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCCSS
T ss_pred ccCCCCCC-ce-eEecCCCeEECCCCCCEEeCCc
Confidence 57999998 55 4557899999999999986544
No 72
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=90.16 E-value=0.11 Score=36.87 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=22.9
Q ss_pred CCCCCCCCCc--eEEe--cCCCceEcCcCceeecc
Q 025357 5 YCADCKRLTE--VVFD--HSAGDTICSECGLVLEA 35 (254)
Q Consensus 5 ~Cp~Cg~~~~--lv~D--~~~G~~vC~~CG~Vl~e 35 (254)
.||.|+...+ +..| ...|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 5999998533 4454 35789999999987643
No 73
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=90.14 E-value=0.17 Score=36.28 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
-.||.||. ..+ .-...|-+-|..||.++....
T Consensus 37 y~CpfCgk-~~v-kR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 37 YDCSFCGK-KTV-KRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp CCCSSSCS-SCC-EEEETTEEECTTTCCEEECCS
T ss_pred CcCCCCCC-cee-eecccceEEcCCCCCEEeCCc
Confidence 57999998 554 556799999999999986443
No 74
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=89.81 E-value=0.3 Score=31.61 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCCCCCCCCceEEec------CCC---ceEcCcCceeecc
Q 025357 4 SYCADCKRLTEVVFDH------SAG---DTICSECGLVLEA 35 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~------~~G---~~vC~~CG~Vl~e 35 (254)
..||.||. ..+++.. +++ ..+|.+||..-.+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 56999998 5665442 123 4799999987543
No 75
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=89.78 E-value=0.1 Score=32.58 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCceEEecCCC
Q 025357 3 DSYCADCKRLTEVVFDHSAG 22 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G 22 (254)
.-.|+.||- |+|++.|
T Consensus 4 ~y~C~vCGy----vyd~~~G 19 (46)
T 6rxn_A 4 KYVCNVCGY----EYDPAEH 19 (46)
T ss_dssp CEEETTTCC----EECGGGG
T ss_pred EEECCCCCe----EEeCCcC
Confidence 345666663 4555555
No 76
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=89.64 E-value=0.2 Score=37.79 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCceEE--e--cCCCceEcCcCceeec
Q 025357 1 MADSYCADCKRLTEVVF--D--HSAGDTICSECGLVLE 34 (254)
Q Consensus 1 ~~~~~Cp~Cg~~~~lv~--D--~~~G~~vC~~CG~Vl~ 34 (254)
|++..||+||+ -|.. | ...+.++|..||+...
T Consensus 2 ~~~~FCp~Cgn--lL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNN--MLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCC--BCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCc--cCcccccCcCCCCEEECCcCCCeee
Confidence 45688999997 3433 3 3456899999999864
No 77
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=88.03 E-value=2.6 Score=35.52 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCCHH----HHHHHHHHHHHHh-hCCCCCCCCHHHHHHHHHHHHHHhcCCCCC----HHHHHHHhcC
Q 025357 108 QAFKSISAMSDRLGLVTT----IKDRANEIYKKVE-DQKPLRGRNQEAIVAACLYIACRQENKPRT----VKEFCSVANG 178 (254)
Q Consensus 108 ~a~~~I~~i~~~L~Lp~~----v~e~A~~i~k~~~-~~~~~~Gr~~~~iaAAclY~AcR~~~~p~t----l~eIa~~~~~ 178 (254)
..+.++..+...++++.. +...|..+...+. +.. +-.-+|..+||||+..+. .+.+.. ...+... +|
T Consensus 148 Tp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~-~l~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~-t~ 223 (252)
T 1f5q_B 148 LSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGR-SAMKRPVLITLACMHLTM--NQKYDYYENRIDGVCKS-LY 223 (252)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHH-HHTSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchh-hhccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHH-HC
Confidence 357788888888888864 3344554444432 222 234678999999965443 443333 3456664 89
Q ss_pred CCHHHHHHHHHHHHHHhch
Q 025357 179 TTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 179 v~~~~i~~~~k~l~~~l~~ 197 (254)
++...|..+++.|.+.+..
T Consensus 224 ~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 224 ITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743
No 78
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=87.85 E-value=0.21 Score=32.22 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCceEEecCCC
Q 025357 3 DSYCADCKRLTEVVFDHSAG 22 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G 22 (254)
.-.|+.||- |+|++.|
T Consensus 3 ~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 3 KYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CEEETTTCC----EECTTTC
T ss_pred ceECCCCCe----EECCCcC
Confidence 334555553 3454444
No 79
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=87.82 E-value=0.21 Score=34.01 Aligned_cols=27 Identities=26% Similarity=0.757 Sum_probs=17.2
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce-ee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL-VL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~-Vl 33 (254)
-.|++||.. +.. .....+.|..||. ||
T Consensus 29 Y~C~~CG~~--~e~-~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSK--LSL-SRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCE--ECC-CTTSTTCCSSSCCCCC
T ss_pred EECCCCCCc--cee-CCCCCccCCCCCceEe
Confidence 468899872 111 2345567999998 65
No 80
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=86.99 E-value=0.39 Score=32.74 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=22.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|| ||. ..+.+...-..-|. ||.++.
T Consensus 5 v~C~-C~~--~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGR--ALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSC--CEEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCC--EEEEcCCCcEEECC-CCCeee
Confidence 4699 997 46778888899999 999985
No 81
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=86.01 E-value=0.24 Score=31.71 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=6.1
Q ss_pred eEcCcCceeec
Q 025357 24 TICSECGLVLE 34 (254)
Q Consensus 24 ~vC~~CG~Vl~ 34 (254)
.+|..||+|.+
T Consensus 4 y~C~~CGyvYd 14 (52)
T 1e8j_A 4 YVCTVCGYEYD 14 (52)
T ss_dssp EECSSSCCCCC
T ss_pred EEeCCCCeEEc
Confidence 45555555554
No 82
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=85.51 E-value=2 Score=30.68 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhchh
Q 025357 154 ACLYIACRQENKPRTVKEFCSVAN-GTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 154 AclY~AcR~~~~p~tl~eIa~~~~-~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.|++-... ..++.+|+.. + |.+..++..+++++.+.+.-+
T Consensus 36 iamyL~r~~t--~~Sl~~IG~~-fggrdHsTV~ha~~ki~~~~~~d 78 (94)
T 1j1v_A 36 MAMALAKELT--NHSLPEIGDA-FGGRDHTTVLHACRKIEQLREES 78 (94)
T ss_dssp HHHHHHHHHS--CCCHHHHHHH-TTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH--CcCHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhC
Confidence 4677765554 5889999995 7 899999999999999988643
No 83
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=85.07 E-value=18 Score=31.23 Aligned_cols=105 Identities=9% Similarity=0.052 Sum_probs=78.6
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHhhC--CC-CCCCCHHHHHHHHHHHHHH-hcCCCCCHHHHHHHhcCCCHHHH
Q 025357 109 AFKSISAMSDRLGLVTTIKDRANEIYKKVEDQ--KP-LRGRNQEAIVAACLYIACR-QENKPRTVKEFCSVANGTTKKEI 184 (254)
Q Consensus 109 a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~--~~-~~Gr~~~~iaAAclY~AcR-~~~~p~tl~eIa~~~~~v~~~~i 184 (254)
..++|.++...-.++..+.-.|..+..++... ++ +...+..-+..+++-+|.+ ......+-+..|.+ .|++..+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~EL 155 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHH
Confidence 45688888888899998888888777777652 22 2345666777777888887 44567888999996 89999999
Q ss_pred HHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhc
Q 025357 185 GRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221 (254)
Q Consensus 185 ~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (254)
.+.-+++...++.+ + .+++++|..-+...+
T Consensus 156 N~LE~eFL~lLdf~------L-~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 156 NILENDFLKRVNYR------I-IPRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHTTTTC------C-SCCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCc------e-eeCHHHHHHHHHHHh
Confidence 99999999988876 3 245667765555443
No 84
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=84.21 E-value=0.54 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=15.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
-+|+.||. --.+.....|+++| ||.=
T Consensus 7 Y~C~~CGn-ivev~~~g~~~l~C--CG~~ 32 (36)
T 1dxg_A 7 YKCELCGQ-VVKVLEEGGGTLVC--CGED 32 (36)
T ss_dssp EECTTTCC-EEEEEECCSSCEEE--TTEE
T ss_pred EEcCCCCc-EEEEEeCCCcCEEe--CCcc
Confidence 46888875 22233456778887 6643
No 85
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=83.63 E-value=0.49 Score=36.31 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCceEEecC----CCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHS----AGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~----~G~~vC~~CG~Vl 33 (254)
+..||+||+ -+..... ...++|..||++.
T Consensus 24 ~~FCPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 467999997 3333321 2369999999975
No 86
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.59 E-value=1.6 Score=29.98 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
|.|.|++||++ .+|++..++++-++.|.+.=-+
T Consensus 22 g~~psv~EIa~-~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIAD-AAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHH-HHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHH-HHCCCHHHHHHHHHHHHHCCcE
Confidence 78999999999 5999999999999998876433
No 87
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=83.48 E-value=1.9 Score=33.87 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+.-.-+.+|+|.+..+.|.+.++||+ ..+++...+++.+..|.+.
T Consensus 26 ~~yAlr~L~~LA~~~~~~~~s~~eIA~-~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 26 GRYGLTITLELAKRIGDGPISLRSIAQ-DKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHH-HHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 345556667888765567999999999 4999999999999999874
No 88
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.37 E-value=1.2 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCceEEe--------cCCCceEcCcCcee
Q 025357 3 DSYCADCKRLTEVVFD--------HSAGDTICSECGLV 32 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D--------~~~G~~vC~~CG~V 32 (254)
...||.||....+.+. +-+=..+|.+||..
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 3579999984333333 12223689999964
No 89
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.80 E-value=0.49 Score=30.08 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=19.3
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
..||.||+ . ...|-+-|..||..
T Consensus 15 ~iCpkC~a-~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGA-T-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCC-E-----ECTTCSSCSSSSSC
T ss_pred ccCCCCCC-c-----CCCCceecCCCCCc
Confidence 46999998 2 45899999999988
No 90
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=82.12 E-value=0.85 Score=36.50 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 5 YCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 5 ~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
.||.|++. | .+...|...|..||..
T Consensus 44 ACp~CnKK--V-~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS--V-LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC--E-EEETTTEEEETTTTEE
T ss_pred hchhhCCE--e-eeCCCCeEECCCCCCC
Confidence 59999873 4 4778999999999998
No 91
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=81.60 E-value=3.3 Score=29.95 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 154 ACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 154 AclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.|++-... ..++.+|+.. +|-+..++..+++++.+.+..+
T Consensus 40 iAmYL~r~~t--~~Sl~~IG~~-fgRDHsTV~ha~~ki~~~~~~d 81 (101)
T 3pvv_A 40 IAMYLCRELT--DLSLPKIGQA-FGRDHTTVMYAQRKILSEMAER 81 (101)
T ss_dssp HHHHHHHHHC--CCCHHHHHHH-TTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh--CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHhC
Confidence 4677765554 5889999995 8899999999999999988654
No 92
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=80.96 E-value=2.9 Score=30.97 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 152 VAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 152 aAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+..|++-+..+.|.+..|||+. .+++...+.+.++.|.+.
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~-~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQT-NNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 334455554444678999999994 999999999999999874
No 93
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=80.94 E-value=1.7 Score=33.29 Aligned_cols=44 Identities=7% Similarity=0.002 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 150 ~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.-.-+.+|+|....+.|.+.+|||+ ..+++...+.+.+..|.+.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~-~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAE-ENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHH-HTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 3444667777655556899999999 4999999999999999874
No 94
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.73 E-value=2.5 Score=27.89 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=28.3
Q ss_pred HhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 161 RQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 161 R~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..++.|++..|||+. ++++..++.+.++.|.+.
T Consensus 20 ~~~~~~~s~~eLA~~-lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKK-CQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHH-HCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345678999999994 999999999999998764
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=80.22 E-value=5.4 Score=26.42 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=28.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..+.+|||+. .+++..++......+.+.|+..
T Consensus 31 g~s~~eIA~~-l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYD-LDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHH-TTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 4689999995 9999999999999999999865
No 96
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=78.96 E-value=0.63 Score=30.59 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
+..||.||. -.+ ..+|..||....
T Consensus 6 mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 6 MKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred ceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 578999997 333 567999998853
No 97
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=78.65 E-value=1.1 Score=30.81 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceEEe-------cCCC---------ceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFD-------HSAG---------DTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D-------~~~G---------~~vC~~CG~Vl 33 (254)
++||.||+ ..++.+ + .| -.+|..||.++
T Consensus 3 m~Cp~Cg~-~~l~~~~~~~~~~~-~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQ-GEMVSGIKDIPYTF-RGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSS-SBEEEEEEEEEEEE-TTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCC-CeeEeEEEEEEEEE-CCEEEEEcCceeEECCCCCCEE
Confidence 68999997 334322 2 22 35788998876
No 98
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=77.30 E-value=0.75 Score=29.65 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=6.8
Q ss_pred eEcCcCceeecc
Q 025357 24 TICSECGLVLEA 35 (254)
Q Consensus 24 ~vC~~CG~Vl~e 35 (254)
.+|..||+|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 456666666543
No 99
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=76.65 E-value=0.74 Score=28.57 Aligned_cols=31 Identities=23% Similarity=0.679 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCceEEe-cCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFD-HSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D-~~~G~~vC~~CG~Vl 33 (254)
...|.+|+....-.|. ...|..+|..||+-.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 3568888874222222 346778888888754
No 100
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=76.19 E-value=1.4 Score=32.98 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=13.7
Q ss_pred CCCHHHHHHHhcCCCHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~ 187 (254)
..|+.++|+. .|++..+|.+.
T Consensus 84 glsq~~la~~-~g~s~~~i~~~ 104 (133)
T 3o9x_A 84 SLTQKEASEI-FGGGVNAFSRY 104 (133)
T ss_dssp TCCHHHHHHH-HCSCTTHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHH
Confidence 4667777773 67776666654
No 101
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=76.14 E-value=0.95 Score=27.64 Aligned_cols=30 Identities=30% Similarity=0.851 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceEE-ecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVF-DHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~-D~~~G~~vC~~CG~Vl 33 (254)
..|-+|+....-.+ ....|..+|..||+-.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 32 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFL 32 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHH
Confidence 46888987433233 3456888899999754
No 102
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=76.00 E-value=5.5 Score=24.98 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..+.+|||+. .++++.++....+.+.+.|+..
T Consensus 13 g~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEK-LHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHH-TCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHHHCCC
Confidence 3688999995 9999999999999999999875
No 103
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.86 E-value=1.9 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.747 Sum_probs=20.7
Q ss_pred CCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 5 YCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 5 ~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
.||.|+. .++.+.....+.|..||...
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 5999986 35566666678999999875
No 104
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=75.71 E-value=3.4 Score=31.66 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
...-.-+.+|+|- ..+.|.+.+|||+. .+++...+.+.+..|.+.
T Consensus 13 ~~yAl~~L~~La~-~~~~~~~~~~iA~~-~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 13 FSIAVHILSILKN-NPSSLCTSDYMAES-VNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHH-SCGGGCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3344556667765 35668999999994 999999999999999873
No 105
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=75.67 E-value=13 Score=26.03 Aligned_cols=39 Identities=5% Similarity=-0.198 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 152 VAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 152 aAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
..+.-|+--.....+.++.++|+. .|+++.++.+.+++.
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEK-LDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHH-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 334445555544558999999995 999999998887764
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=75.34 E-value=4.7 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
...|++|||.. .|++..+++....+..+.|...
T Consensus 37 ~~~s~~EIA~~-lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 37 KPKTLEEVGQY-FNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHBTT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999995 9999999999988888888754
No 107
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=75.30 E-value=0.97 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.2
Q ss_pred CCceEcCcCceeecccc
Q 025357 21 AGDTICSECGLVLEAYS 37 (254)
Q Consensus 21 ~G~~vC~~CG~Vl~e~~ 37 (254)
....+|..||+|.++..
T Consensus 25 m~~y~C~vCGyvYD~~~ 41 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEAL 41 (81)
T ss_dssp CCEEEETTTCCEEETTT
T ss_pred cceEEeCCCCEEEcCCc
Confidence 45789999999987543
No 108
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=75.24 E-value=10 Score=25.64 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=28.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||+. .+++..++....+.+.+.|+..
T Consensus 37 ~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 37 LPNKMIARR-LDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 789999995 9999999999999999999865
No 109
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=74.91 E-value=1.1 Score=30.47 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=8.1
Q ss_pred CceEcCcCceeecc
Q 025357 22 GDTICSECGLVLEA 35 (254)
Q Consensus 22 G~~vC~~CG~Vl~e 35 (254)
...+|..||+|.++
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 34566666666653
No 110
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=74.24 E-value=1.5 Score=32.05 Aligned_cols=31 Identities=26% Similarity=0.649 Sum_probs=27.0
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|.|--|.+|.+
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 41 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTE 41 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhcc
Confidence 468999999999987 6667899999999985
No 111
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.15 E-value=2.5 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.721 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
...||.|+. .+.++ .|...|..|+.-+
T Consensus 32 ~~~CP~Cq~--eL~~~--g~~~hC~~C~~~f 58 (101)
T 2jne_A 32 ELHCPQCQH--VLDQD--NGHARCRSCGEFI 58 (101)
T ss_dssp CCBCSSSCS--BEEEE--TTEEEETTTCCEE
T ss_pred cccCccCCC--cceec--CCEEECccccchh
Confidence 388999997 46665 5666699998865
No 112
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=73.13 E-value=1.5 Score=32.98 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=29.5
Q ss_pred ceEEec-CCCceEcCcCceee--cccccccCcccccccCC
Q 025357 14 EVVFDH-SAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (254)
Q Consensus 14 ~lv~D~-~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (254)
.+-.|. +.|..+|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 10 e~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 10 EVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred ccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 333454 77999999999987 66678999999999743
No 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.94 E-value=2.5 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 1 ~~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
|+ ..||.|+. .+.++ .+...|..||.-+.
T Consensus 1 M~-~~CP~C~~--~l~~~--~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 1 ME-ITCPVCHH--ALERN--GDTAHCETCAKDFS 29 (81)
T ss_dssp CC-CCCSSSCS--CCEEC--SSEEECTTTCCEEE
T ss_pred CC-CCCCCCCC--ccccC--CCceECccccccCC
Confidence 45 89999997 35554 55666999888764
No 114
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=72.85 E-value=12 Score=26.38 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 151 iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
+..++-|+--...+.+.++.++|+. .|++...+.+.+++
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~-~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQH-VCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHH-TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHH-HCCCHHHHHHHHHH
Confidence 3445556554444478999999995 99999999888775
No 115
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=72.83 E-value=10 Score=30.80 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhc----------CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 146 RNQEAIVAACLYIACRQE----------NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 146 r~~~~iaAAclY~AcR~~----------~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+...-.|..++.-++.. ..|.|..+||+. .|++..++.|..++|.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~-lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEI-TGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 444444555554444433 358899999995 999999999999999875
No 116
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.39 E-value=1.9 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=21.4
Q ss_pred CCCCCCCCC-CceEEecC--CCceEcCcCceee
Q 025357 4 SYCADCKRL-TEVVFDHS--AGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~-~~lv~D~~--~G~~vC~~CG~Vl 33 (254)
..|+.|+++ +.++.|.+ .=.+.|..||..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 469999996 45665433 3467799999874
No 117
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=71.79 E-value=1.2 Score=29.87 Aligned_cols=31 Identities=29% Similarity=0.755 Sum_probs=20.3
Q ss_pred CCCCCCCCCCc-eEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTE-VVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~-lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|-+||.... +--...+|..+|..||+-..
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 56888887422 22223467888999988764
No 118
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=71.35 E-value=4.7 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||+. ++++..++....+.+.+.|++.
T Consensus 45 ~s~~eIA~~-L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 45 FTNQEIADA-LHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 578999995 9999999999999999999876
No 119
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=71.28 E-value=18 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 151 iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
+..+.-|+.-.. ..+.++.++|+. .|+++..+.+.+++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~-~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTAL-TGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHH-HTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHH-HCCCHHHHHHHHHHH
Confidence 344555655544 457999999995 899999999887753
No 120
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.05 E-value=7 Score=26.53 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
+.+.|..|||+. +|++..+|.+.+.+|.+.=-+
T Consensus 29 ~~~~t~~eLA~~-Lgvs~~tV~~~L~~L~~~G~I 61 (77)
T 1qgp_A 29 GKATTAHDLSGK-LGTPKKEINRVLYSLAKKGKL 61 (77)
T ss_dssp SSCEEHHHHHHH-HCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHHCCCE
Confidence 357999999995 999999999999998765433
No 121
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=70.93 E-value=2.5 Score=32.96 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=27.5
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccCC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (254)
.+.|..+|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 578999999999987 66678999999999853
No 122
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=70.84 E-value=3 Score=35.53 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
...||.||+. .......-..+|.+||.+.=
T Consensus 107 ~~fC~~CG~~--~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHE--MYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCB--EEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCc--CccCCCceeeeCCCCCCEec
Confidence 3679999983 33444566789999998753
No 123
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=70.77 E-value=14 Score=26.06 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 150 ~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
.+..+.-|+--.... +.++.++|+. .|+++..+.+.+++.
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~-~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGND-FHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 344555666655444 8999999995 899999998887753
No 124
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=70.73 E-value=2.4 Score=31.91 Aligned_cols=31 Identities=23% Similarity=0.580 Sum_probs=27.0
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|.|.-|.+|.+
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~ 48 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTE 48 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCc
Confidence 478999999999987 5667899999999985
No 125
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=70.69 E-value=2.3 Score=32.82 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.3
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccCC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (254)
.+.|..+|..||.-| .+.-+|+|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 578999999999886 66678999999999853
No 126
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=70.65 E-value=0.95 Score=30.79 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=14.1
Q ss_pred CCCCCCCCCCceEEec---CCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFDH---SAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~---~~G~~vC~~CG~Vl 33 (254)
..|-+|+....-.|.. ..| ++|..||+-.
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 4466666532233332 334 5666666554
No 127
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=70.61 E-value=1.4 Score=35.06 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=20.5
Q ss_pred CCCCCCCC-CceEEe--cCCCceEcCcCcee
Q 025357 5 YCADCKRL-TEVVFD--HSAGDTICSECGLV 32 (254)
Q Consensus 5 ~Cp~Cg~~-~~lv~D--~~~G~~vC~~CG~V 32 (254)
.|+.|+++ +.++.| ...=.+.|..||..
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 69999996 456664 23445779999987
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=70.52 E-value=16 Score=23.46 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||+. .|++..++....+.+.+.|+..
T Consensus 27 ~s~~eIA~~-l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 27 KTTKEIASE-LFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHH-HCCCHHHHHHHHHHHHHHHCCC
Confidence 589999995 9999999999999999999865
No 129
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=69.95 E-value=2.4 Score=28.07 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=15.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
-.|.+||.... .+ ....+-|.+||.=
T Consensus 22 Y~C~~Cg~~~~--l~-~~~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNT--IQ-AKEVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCC--CC-SSSCCCCSSSCCC
T ss_pred EECCCCCCeee--cC-CCCceECCCCCcE
Confidence 46888876322 22 3455778888864
No 130
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=69.76 E-value=3.4 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCCCCCCC-CceEEecCCCceEcCcCce
Q 025357 5 YCADCKRL-TEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 5 ~Cp~Cg~~-~~lv~D~~~G~~vC~~CG~ 31 (254)
.||.|+.. .++.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 59999863 3688888899999999993
No 131
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=69.45 E-value=6.7 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
...|.+|||+. .|++..+++....+..+.|...
T Consensus 24 ~g~s~~eIA~~-lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHHH
Confidence 46899999995 9999999999998888888654
No 132
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=69.42 E-value=2.3 Score=33.58 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=27.2
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccCC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFANE 50 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~~ 50 (254)
.+.|..+|..||.-| .+.-+|.|.-|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 568999999999987 56678999999999853
No 133
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.37 E-value=3.6 Score=27.08 Aligned_cols=51 Identities=6% Similarity=-0.029 Sum_probs=34.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
.|++|||+. +||+..+|.++++-=...++ ...+...-|.+.+.+||..++.
T Consensus 1 ~T~~diA~~-aGVS~sTVSrvLng~~~~~~---------vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 1 MKLDEIARL-AGVSRTTASYVINGKAKQYR---------VSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHTCTTTTT---------CTTHHHHHHHHHHHHHTCCCC-
T ss_pred CCHHHHHHH-HCcCHHHHHHHHcCCCCCCC---------CCHHHHHHHHHHHHHhCCCccH
Confidence 478999995 99999999988642000001 1234567888888899887654
No 134
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=68.92 E-value=7.9 Score=30.12 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.|.|..|||+ ..|++..++.|..++|.+.=
T Consensus 138 ~~~t~~~lA~-~lg~sr~tvsR~l~~L~~~g 167 (195)
T 3b02_A 138 VTVSHEEIAD-ATASIRESVSKVLADLRREG 167 (195)
T ss_dssp EECCHHHHHH-TTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHH-HhCCCHHHHHHHHHHHHHCC
Confidence 4789999999 49999999999999998753
No 135
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=68.69 E-value=2.8 Score=33.56 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=21.5
Q ss_pred CCCC--CCCCCceEEecCCCceEcCcCceeec
Q 025357 5 YCAD--CKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 5 ~Cp~--Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
.||. |++. |.+...|...|..||...+
T Consensus 45 aC~~~~CnKK---v~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKK---VIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCB---CEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCc---cccCCCCeEECCCCCCcCC
Confidence 5999 9873 3466789999999997753
No 136
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=68.60 E-value=10 Score=30.79 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..|.|..|||+. .|++..++.|..++|.+.
T Consensus 191 ~~~lt~~~lA~~-lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEA-IGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHH-HCCcHHHHHHHHHHHHHC
Confidence 357899999995 999999999999999875
No 137
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=68.54 E-value=25 Score=23.97 Aligned_cols=74 Identities=8% Similarity=-0.118 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhheeeCcceeeehhh
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLFVLDFSSCMIFCSL 242 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~v~~~~~~~~~~~~ 242 (254)
.....|+.++|+. .|++..+|.+..+ |-. .| ..+.+.+++..|+++.+-..--+.. =---..|
T Consensus 19 ~~~glsq~~lA~~-~gis~~~is~~e~------G~~------~p---~~~~l~~ia~~l~v~~~~l~~~~~~-~~~~~~l 81 (94)
T 2kpj_A 19 AKSEKTQLEIAKS-IGVSPQTFNTWCK------GIA------IP---RMGKVQALADYFNINKSDLIEDKKL-NIDTVPI 81 (94)
T ss_dssp TTSSSCHHHHHHH-HTCCHHHHHHHHT------TSC------CC---CHHHHHHHHHHHTCCTHHHHSCSCC-CCCCCCC
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHh------CCC------CC---CHHHHHHHHHHHCcCHHHHhcCCCc-ccccccc
Confidence 3445899999995 8999999877632 211 11 3678899999999876543321111 0011235
Q ss_pred cccccCCCCCC
Q 025357 243 WPYLSNPMHPF 253 (254)
Q Consensus 243 ~~~~~~~~~~~ 253 (254)
..|-.-|-|||
T Consensus 82 ~~~~~~~~~~~ 92 (94)
T 2kpj_A 82 ESGYTLEHHHH 92 (94)
T ss_dssp SSSCCCCCCCC
T ss_pred ccccccccccc
Confidence 55555555555
No 138
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=68.44 E-value=21 Score=25.11 Aligned_cols=64 Identities=6% Similarity=0.044 Sum_probs=39.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHH------HHHHHHHHHHHhcCCCCCHHHHHHHhcCC-CHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEA------IVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIG 185 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~------iaAAclY~AcR~~~~p~tl~eIa~~~~~v-~~~~i~ 185 (254)
|..+|..++++.....+ +|++... .++.. +-.|+-++. ....++.|||.. .|. +...+.
T Consensus 24 ~~~lA~~~~~S~~~l~r---~fk~~~G------~s~~~~~~~~Rl~~A~~lL~----~~~~si~~IA~~-~Gf~~~s~F~ 89 (108)
T 3oou_A 24 LKTLGNDFHINAVYLGQ---LFQKEMG------EHFTDYLNRYRVNYAKEELL----QTKDNLTIIAGK-SGYTDMAYFY 89 (108)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHHS------SCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHHC------cCHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHH-cCCCChHHHH
Confidence 66788888888754444 5665543 33322 222332222 235789999994 887 678888
Q ss_pred HHHHH
Q 025357 186 RAKEF 190 (254)
Q Consensus 186 ~~~k~ 190 (254)
+.|++
T Consensus 90 r~Fk~ 94 (108)
T 3oou_A 90 RQFKK 94 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 139
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.06 E-value=7.9 Score=28.48 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=30.8
Q ss_pred HHHHHHhcCCC-CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKP-RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p-~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+|.+....+.| .|..||++. .+++..++.+.++.|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~-l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKS-LKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 44444456667 999999995 899999999999999864
No 140
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=68.04 E-value=13 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=28.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||+. +++++.++......+.+.|+..
T Consensus 50 ~s~~EIA~~-L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKK-LNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 578999995 9999999999999999999876
No 141
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=68.04 E-value=10 Score=26.04 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.+.|..|||+. +|++..+|++.+.+|.+.=
T Consensus 26 ~~~t~~eLA~~-Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 26 KATTAHDLSGK-LGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 57999999995 9999999999999997754
No 142
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=67.98 E-value=2.5 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=27.0
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|+|--|.+|.+
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~ 70 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTK 70 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCc
Confidence 568999999999987 6667899999999984
No 143
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=67.96 E-value=1.9 Score=28.28 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..||.||. . ..---||.+||+-=+
T Consensus 31 ~~c~~cG~-~------~~pH~vc~~CG~Y~g 54 (60)
T 2zjr_Z 31 TECPQCHG-K------KLSHHICPNCGYYDG 54 (60)
T ss_dssp EECTTTCC-E------ECTTBCCTTTCBSSS
T ss_pred eECCCCCC-E------eCCceEcCCCCcCCC
Confidence 46888886 2 245578999996543
No 144
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=67.77 E-value=2.5 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.1
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|+|.-|.+|.+
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 71 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTR 71 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESS
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhcc
Confidence 568999999999987 6667899999999984
No 145
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=67.58 E-value=8.9 Score=30.18 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 146 RNQEAIVAACLYIACRQEN---KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 146 r~~~~iaAAclY~AcR~~~---~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+...-.+..+..-+...+ .|.|..+||+. .|++..++.|..++|.+.
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANH-LGSHREVITRMLRYFQVE 196 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 3344444444444444333 48999999995 999999999999999875
No 146
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.37 E-value=9 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
...|..|||+. .|++..++........+.|.
T Consensus 29 ~~~s~~eIA~~-l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAY-FGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 57999999995 99999999988877777776
No 147
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=67.30 E-value=11 Score=30.13 Aligned_cols=49 Identities=6% Similarity=0.133 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHhc----CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 145 GRNQEAIVAACLYIACRQE----NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 145 Gr~~~~iaAAclY~AcR~~----~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++...-.|..+..-++.. ..|.|..+||+. .|++..++.|..++|.+.
T Consensus 161 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~-lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 161 TLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARC-LDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHH-hCCChhHHHHHHHHHHHC
Confidence 3445555555444322222 257899999995 999999999999999764
No 148
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=66.85 E-value=2.3 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=8.8
Q ss_pred eEcCcCceeeccc
Q 025357 24 TICSECGLVLEAY 36 (254)
Q Consensus 24 ~vC~~CG~Vl~e~ 36 (254)
.+|..||+|.++.
T Consensus 3 ~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 3 LSCKICGYIYDED 15 (52)
T ss_dssp EEESSSSCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 5677777777543
No 149
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=66.74 E-value=1.5 Score=31.04 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=13.4
Q ss_pred CCCceEcCcCceeeccc
Q 025357 20 SAGDTICSECGLVLEAY 36 (254)
Q Consensus 20 ~~G~~vC~~CG~Vl~e~ 36 (254)
.....+|..||+|.++.
T Consensus 32 ~m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 32 AYLKWICITCGHIYDEA 48 (87)
T ss_dssp CCCEEEETTTTEEEETT
T ss_pred CCceEECCCCCeEecCC
Confidence 35578999999998754
No 150
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=66.52 E-value=13 Score=29.62 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=35.2
Q ss_pred CCHHHHHHHHH-HHHHHhc--------CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 146 RNQEAIVAACL-YIACRQE--------NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 146 r~~~~iaAAcl-Y~AcR~~--------~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+...-.|..+ .++-+.. ..|.|..+||+. .|++..++.|..++|.+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATL-SNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 34455555555 4454431 357999999995 999999999999999775
No 151
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=66.19 E-value=3.1 Score=36.32 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=19.3
Q ss_pred CCCCCCCCCCC--ceEEe--cCCC--ceEcCcCcee
Q 025357 3 DSYCADCKRLT--EVVFD--HSAG--DTICSECGLV 32 (254)
Q Consensus 3 ~~~Cp~Cg~~~--~lv~D--~~~G--~~vC~~CG~V 32 (254)
...||.||+.. .++.. ..+| .+.|.-||+-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 36899999953 23331 1356 5899999864
No 152
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=65.80 E-value=11 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.|.|..+||+. .|++..++.|..++|.+.=
T Consensus 166 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~g 195 (220)
T 2fmy_A 166 LGLNTEEIALM-LGTTRQTVSVLLNDFKKMG 195 (220)
T ss_dssp CSSCHHHHHHH-HTSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHH-hCCcHHHHHHHHHHHHHCC
Confidence 58999999995 9999999999999998753
No 153
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=65.71 E-value=21 Score=25.36 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 150 ~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
.+..+.-|+-. ....+.++.++|+. +++++..|.+.+++.
T Consensus 8 ~i~~~~~~i~~-~~~~~~~~~~lA~~-~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEA-NIEEPLSTDDIAYY-VGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHT-CSSSCCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 34444455532 23457999999995 899999998887763
No 154
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=65.38 E-value=3.8 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 151 iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+-+.+|+|.. .+.|.+.++||+. .+++...|++.+..|.+.
T Consensus 14 Alr~l~~La~~-~~~~~s~~~IA~~-~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 14 AVHSILYLDAH-RDSKVASRELAQS-LHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHTT-TTSCBCHHHHHHH-HTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 34455677754 4678999999994 999999999999999875
No 155
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=65.03 E-value=2.8 Score=32.72 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=27.1
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|.|--|.+|.+
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 578999999999987 6678899999999984
No 156
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.88 E-value=5.9 Score=34.56 Aligned_cols=31 Identities=16% Similarity=0.428 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCceEEecCCC-----------ceEcCcCceee
Q 025357 3 DSYCADCKRLTEVVFDHSAG-----------DTICSECGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G-----------~~vC~~CG~Vl 33 (254)
...||+||....+.+=.-+| -.+|..||.-+
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 46899999854443321222 57999999887
No 157
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.75 E-value=7.9 Score=27.11 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=28.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||.. ++++..++...++.+.+.|+..
T Consensus 43 ~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADR-MFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 578999995 9999999999999999999876
No 158
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=64.70 E-value=1.8 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
-+..|+.||. -.+ ..+|..||...
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBC
T ss_pred cceECCCCCC-EEc-------cccCcCCCCcc
Confidence 3578999986 322 46799999775
No 159
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=64.31 E-value=25 Score=25.24 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 150 ~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
.+..+.-|+--.. ..+.++.++|+. .++++..|.+.+++
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~-~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASE-LLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHH-HCcCHHHHHHHHHH
Confidence 3444445554333 348999999995 99999999888765
No 160
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=63.82 E-value=2.6 Score=27.61 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=15.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..||.||. . ..---||.+||+-=+
T Consensus 31 ~~c~~cGe-~------~~~H~vc~~CG~Y~g 54 (60)
T 3v2d_5 31 VPCPECKA-M------KPPHTVCPECGYYAG 54 (60)
T ss_dssp EECTTTCC-E------ECTTSCCTTTCEETT
T ss_pred eECCCCCC-e------ecceEEcCCCCcCCC
Confidence 46888886 1 133467999996543
No 161
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.40 E-value=17 Score=24.35 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.+..||++. +|++..++++.++.|.+.
T Consensus 13 ~~~s~~eLa~~-lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEA-LAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999998765
No 162
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=63.13 E-value=22 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHHHhcCC-CCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhchh
Q 025357 156 LYIACRQENK-PRTVKEFCSVAN-GTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 156 lY~AcR~~~~-p~tl~eIa~~~~-~v~~~~i~~~~k~l~~~l~~~ 198 (254)
|..+|++.|. +.++..||.. + +-++..+...|++|.+.+.-.
T Consensus 44 IL~~cQ~~G~s~~tFa~iA~~-L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 44 ILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp HHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCChhHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHH
Confidence 6678888876 8899999985 6 589999999999999988643
No 163
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=63.04 E-value=4.9 Score=33.40 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=22.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
..|-.||......+++..|-.+|.+|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 5799999753457889999999999963
No 164
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=62.45 E-value=7.3 Score=29.05 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=19.6
Q ss_pred CCCCCCCCCCceEEec--------CCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFDH--------SAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~--------~~G~~vC~~CG~Vl 33 (254)
..||.||....+.+.. .+-..+|.+||..-
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w 110 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIF 110 (122)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEE
T ss_pred CCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEe
Confidence 5799999853443331 22237999999864
No 165
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=62.37 E-value=1.6 Score=28.90 Aligned_cols=31 Identities=32% Similarity=0.922 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceEEe-cCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFD-HSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D-~~~G~~vC~~CG~Vl~ 34 (254)
..|-+||....-.|. ...|..+|..||+-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 457777763222232 3456777777777654
No 166
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=62.29 E-value=5.8 Score=31.26 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCceEEec---CCCceEcCcCce
Q 025357 3 DSYCADCKRLTEVVFDH---SAGDTICSECGL 31 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~---~~G~~vC~~CG~ 31 (254)
...||.||.. ..+..+ ..-..+|..||.
T Consensus 3 ~~~C~~CG~~-~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE-VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB-CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc-cccccccCCCCcceECCCCCC
Confidence 3679999984 323222 122569999994
No 167
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=61.32 E-value=9 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 163 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRI-VGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999864
No 168
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=61.12 E-value=4.4 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
-+|+.||. --.+.....|.++| ||.-++
T Consensus 8 YkC~~CGn-ivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 8 YKCEVCGN-IVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EECTTTCC-EEEEEECCSSCEEE--TTEECE
T ss_pred EEcCCCCe-EEEEEcCCCcceec--CCcccc
Confidence 46999986 22233667788888 887654
No 169
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=60.85 E-value=11 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..|.|..+||+. .|++..++.|..++|.+.
T Consensus 176 ~l~~t~~~iA~~-lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGR-LGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHH-TTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 368899999995 999999999999998765
No 170
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=60.59 E-value=2.3 Score=32.09 Aligned_cols=17 Identities=35% Similarity=0.810 Sum_probs=14.2
Q ss_pred EecCCCceEcCcCceee
Q 025357 17 FDHSAGDTICSECGLVL 33 (254)
Q Consensus 17 ~D~~~G~~vC~~CG~Vl 33 (254)
++-.+|.++|.+||.+.
T Consensus 93 ~~V~EG~L~Cp~cgr~y 109 (125)
T 3q87_A 93 IDVVEGSLRCDMCGLIY 109 (125)
T ss_dssp EEEEEEEEEETTTCCEE
T ss_pred eEEEEEEEECCCCCCEe
Confidence 34468999999999996
No 171
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=60.57 E-value=3.4 Score=30.61 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.8
Q ss_pred CceEEecCCCceEcCcCceeec
Q 025357 13 TEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 13 ~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..+......+...|.+||...+
T Consensus 63 a~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 63 AILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CCEEEEEECCEEECSSSSCEEC
T ss_pred cEEEEEeccceEEcCCCCCEEe
Confidence 3577777888999999998875
No 172
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=60.36 E-value=11 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..+.+|||+. ++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~-l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASA-SHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHH-HTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHCCC
Confidence 3688899995 9999999999999999999865
No 173
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=60.30 E-value=24 Score=27.91 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHh--------cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 149 EAIVAACLYIACRQ--------ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 149 ~~iaAAclY~AcR~--------~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.-++...+.++-+. -..|.|..+||+. .|++..++.|..++|.+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~-lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMAR-TSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 34555555555442 2357899999995 999999999999999875
No 174
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=60.24 E-value=17 Score=26.40 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+++..+..+.|.++.||++. .+++..++.+.++.|.+.
T Consensus 40 L~~l~~~~~~~~~~~ela~~-l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESE-FSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCcCHHHHHHH-HCCCcchHHHHHHHHHHC
Confidence 34444444458999999995 999999999999999875
No 175
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=60.23 E-value=9.7 Score=30.14 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
..|.|..+||+. .|++..++.|..++|.+.=
T Consensus 176 ~~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 176 EIPVAKQLVAGH-LSIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp CCCSCTHHHHHH-TTSCHHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHH-hCCCHHHHHHHHHHHHHCC
Confidence 467899999995 9999999999999998763
No 176
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=60.05 E-value=9.9 Score=29.67 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 145 ~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAA-VGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999875
No 177
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=59.87 E-value=10 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~~-lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQI-VGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999875
No 178
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.81 E-value=12 Score=23.89 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
..+.+|||+. .|++..++.+...+..+.|.-
T Consensus 31 g~s~~eIA~~-lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 31 GLSYADAAAV-CGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCCHHHHHHH-HTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHH
Confidence 3789999995 999999999888887777753
No 179
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=59.55 E-value=11 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=22.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
.+.+|||.. +|++..+|+..+.+..+.|.
T Consensus 54 ~s~~eIA~~-lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 54 WSTAQIATD-LGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 689999995 99999998876665555553
No 180
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=59.45 E-value=5.2 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.613 Sum_probs=22.3
Q ss_pred CCCCCC--CCCCCceEEecCCCceEcC-----cCceee
Q 025357 3 DSYCAD--CKRLTEVVFDHSAGDTICS-----ECGLVL 33 (254)
Q Consensus 3 ~~~Cp~--Cg~~~~lv~D~~~G~~vC~-----~CG~Vl 33 (254)
...||. |+. .+..++....+.|. .||...
T Consensus 25 ~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 25 GVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred cEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 567998 986 45566677788998 899876
No 181
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=59.29 E-value=4.3 Score=36.13 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=11.4
Q ss_pred eEcCcCceeeccccc
Q 025357 24 TICSECGLVLEAYSV 38 (254)
Q Consensus 24 ~vC~~CG~Vl~e~~i 38 (254)
..|.+||+|..+...
T Consensus 54 ~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEV 68 (416)
T ss_dssp EEETTTCCEEESSCC
T ss_pred EECCCCCceeecCcC
Confidence 479999999865543
No 182
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=59.28 E-value=19 Score=28.22 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhchhc----------ccccccCCCCHHHHHHH
Q 025357 149 EAIVAACLYIACRQENKPRTVKEFCSVANG--TTKKEIGRAKEFIVKHLEAEM----------GQSVEMGTIHASDYLVI 216 (254)
Q Consensus 149 ~~iaAAclY~AcR~~~~p~tl~eIa~~~~~--v~~~~i~~~~k~l~~~l~~~~----------~~~~~~~~~~p~~~i~r 216 (254)
..++=|.||.+ +.|+++.+++.+ .+ ++..++..+...|.+.+.-.. +..+. ...+-.+||.+
T Consensus 9 ~~~iEAlLf~~----~~pvs~~~La~~-~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~-t~~~~~~~v~~ 82 (162)
T 1t6s_A 9 LRSLEALIFSS----EEPVNLQTLSQI-TAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFL-TEPEFADLVRQ 82 (162)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEE-ECGGGHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHH-hCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEE-EcHHHHHHHHH
Confidence 35566778865 789999999995 88 999999999999988774221 11121 22356788888
Q ss_pred HHh
Q 025357 217 FLL 219 (254)
Q Consensus 217 ~~~ 219 (254)
+..
T Consensus 83 ~~~ 85 (162)
T 1t6s_A 83 LLA 85 (162)
T ss_dssp HHS
T ss_pred Hhc
Confidence 864
No 183
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=58.79 E-value=14 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=28.2
Q ss_pred HhcCCCCCHHHHHHHhcCCCHHH-HHHHHHHHHHH
Q 025357 161 RQENKPRTVKEFCSVANGTTKKE-IGRAKEFIVKH 194 (254)
Q Consensus 161 R~~~~p~tl~eIa~~~~~v~~~~-i~~~~k~l~~~ 194 (254)
..++.+.++.||++. .+++..+ +.+.++.|.+.
T Consensus 25 ~~~~~~~t~~eLa~~-l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA-SGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHH-HCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHH-HCCCchHHHHHHHHHHHHC
Confidence 345557999999995 8999999 99999999875
No 184
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.76 E-value=14 Score=25.15 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
+-..++.|+++. ++|++.+|++-+.+|.+.=.+
T Consensus 14 ~g~vsv~eLa~~-l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 14 RGRMEAAQISQT-LNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp SCSBCHHHHHHH-TTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHCCCE
Confidence 346999999995 999999999999998776443
No 185
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=58.42 E-value=32 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=34.5
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCC---HHHHHHHHHhhcCCCcc
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIH---ASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~---p~~~i~r~~~~L~l~~~ 226 (254)
.....|+.|+|+. .|++...|.+.-+ |.. .+... ...++.+++..||++.+
T Consensus 17 ~~~glSq~eLA~~-~gis~~~is~iE~------G~~------~~~p~~~~~~~~l~~iA~~Lgv~~~ 70 (112)
T 2wus_R 17 EERRITLLDASLF-TNINPSKLKRIEE------GDL------KGLDAEVYIKSYIKRYSEFLELSPD 70 (112)
T ss_dssp HTTTCCHHHHHHH-SSCCHHHHHHHHH------TCC------TTSSCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHcCCCHHHHHHH-HCcCHHHHHHHHC------CCC------CCCcchhHHHHHHHHHHHHhCcCHH
Confidence 3456899999995 9999999877621 211 11112 35788888888888754
No 186
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=58.31 E-value=4.1 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.3
Q ss_pred CCCceEcCcCceee
Q 025357 20 SAGDTICSECGLVL 33 (254)
Q Consensus 20 ~~G~~vC~~CG~Vl 33 (254)
..|+.+|..||.+-
T Consensus 2 k~gDW~C~~C~~~N 15 (32)
T 2lk0_A 2 KFEDWLCNKCCLNN 15 (32)
T ss_dssp CCSEEECTTTCCEE
T ss_pred CCCCCCcCcCcCCc
Confidence 46889999998873
No 187
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=57.70 E-value=22 Score=26.76 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
...-+-+.+|+|-+ .+ + +.+|||+. .+++...+.+.+..|.+.
T Consensus 8 ~~yAl~~L~~La~~-~~-~-s~~~IA~~-~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 8 LAVAIHILSLISMD-EK-T-SSEIIADS-VNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHHHTC-SC-C-CHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CC-C-CHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 44455666777744 44 5 99999994 999999999999999874
No 188
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=57.56 E-value=19 Score=26.52 Aligned_cols=38 Identities=8% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVI 216 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r 216 (254)
..+.++.+||.. .|++...+.+.|++ .+|+ +|.+|+.+
T Consensus 91 ~~~~sl~~lA~~-~g~S~~~f~r~Fk~---~~G~-----------tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQ-VAMSPFHLHRLFKA---TTGM-----------TPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHH-HTSCHHHHHHHHHH---HTSS-----------CHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHH---HHCc-----------CHHHHHHH
Confidence 567999999995 99999999888775 4443 47777765
No 189
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=57.51 E-value=3.3 Score=28.77 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 1 MADSYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 1 ~~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
|....|.+|+- | .+.+ .|.+||.
T Consensus 21 m~~rAC~~C~~---v-~~~d----~CPnCgs 43 (81)
T 3p8b_A 21 MSEKACRHCHY---I-TSED----RCPVCGS 43 (81)
T ss_dssp -CCEEETTTCB---E-ESSS----SCTTTCC
T ss_pred hhHHHHhhCCC---c-cCCC----CCCCCCC
Confidence 34456777764 2 2221 3777775
No 190
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=57.40 E-value=5.1 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=19.2
Q ss_pred CCCCCCCCCCC----ceEEecCCCceEcCcCcee
Q 025357 3 DSYCADCKRLT----EVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 3 ~~~Cp~Cg~~~----~lv~D~~~G~~vC~~CG~V 32 (254)
+..|..||... .++.- .|..||.+|=..
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG--pgvyICdeCI~~ 49 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG--PSVYICDECVDL 49 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC--SSCEEEHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCC--CCCChhHHHHHH
Confidence 46899999742 34433 478899998544
No 191
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=56.97 E-value=5.5 Score=26.35 Aligned_cols=50 Identities=8% Similarity=-0.108 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
...|++|||+. +||+..++.++++ -. . ........-|.+.+.+||..+..
T Consensus 8 ~~~t~~diA~~-aGVS~sTVSr~ln-------~~--~---~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 8 TAATMKDVALK-AKVSTATVSRALM-------NP--D---KVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp -CCCHHHHHHH-TTCCHHHHHHTTT-------CC--C---CSCHHHHHHHHHHHHHHCCCC--
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHc-------CC--C---CCCHHHHHHHHHHHHHhCCCccH
Confidence 35799999995 9999999988642 11 0 11223445678888888876543
No 192
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=56.90 E-value=45 Score=22.98 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCC-CHHHHHHHHHH
Q 025357 112 SISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEF 190 (254)
Q Consensus 112 ~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v-~~~~i~~~~k~ 190 (254)
-+..+|+.++++.....+ +|++........=....-+--|.-++. ....++.|||.. .|. +...+.+.|++
T Consensus 21 ~~~~lA~~~~~S~~~l~r---~fk~~~g~s~~~~~~~~Rl~~A~~lL~----~~~~si~~iA~~-~Gf~~~s~F~r~Fk~ 92 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSI---MFKKNFGIPFQDYLLQKRMEKAKLLLL----TTELKNYEIAEQ-VGFEDVNYFITKFKK 92 (103)
T ss_dssp CHHHHHHHTTCCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHH-TTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHH-hCCCCHHHHHHHHHH
Confidence 367888899998754444 666654322110001111222222222 235789999994 787 67888887776
Q ss_pred H
Q 025357 191 I 191 (254)
Q Consensus 191 l 191 (254)
.
T Consensus 93 ~ 93 (103)
T 3lsg_A 93 Y 93 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=56.65 E-value=16 Score=26.72 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=41.1
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCC--CCCCCHH---HHHHHHHHHHHHhcCCCCCHHHHHHHhcC--CCHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKP--LRGRNQE---AIVAACLYIACRQENKPRTVKEFCSVANG--TTKKEIG 185 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~--~~Gr~~~---~iaAAclY~AcR~~~~p~tl~eIa~~~~~--v~~~~i~ 185 (254)
+..+|..||++..++..-..-|+ +.+. ..|+.+. ......+-+ . .+-..+..+|+.. +| ++..+|.
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~~~---~~g~~~~~gr~~~l~~~~~~~i~~~-~--~~~~~s~~~i~~~-lg~~~s~~tV~ 97 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKDPV---SYGTSKRAPRRKALSVRDERNVIRA-A--SNSCKTARDIRNE-LQLSASKRTIL 97 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSGG---GTTCCCCCCCCCSSCHHHHHHHHHH-H--HHCCCCHHHHHHH-TTCCSCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHccc---ccCCcCCCCCCCcCCHHHHHHHHHH-H--hCCCCCHHHHHHH-HCCCccHHHHH
Confidence 67888999999877665443332 2221 2343221 111222211 2 2234789999985 77 7899998
Q ss_pred HHHHH
Q 025357 186 RAKEF 190 (254)
Q Consensus 186 ~~~k~ 190 (254)
+.++.
T Consensus 98 r~l~~ 102 (141)
T 1u78_A 98 NVIKR 102 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 194
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=56.30 E-value=3.6 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.836 Sum_probs=16.7
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
..||.||. ... + --...|..||+
T Consensus 17 ~lCrRCG~-~sf---H-~qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGS-KAY---H-LQKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCS-SCE---E-TTSCCBTTTCT
T ss_pred CcCCCCCC-ccC---c-CccccCcccCC
Confidence 36999998 443 2 13569999999
No 195
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=56.18 E-value=14 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.+.|+.|||.. .|++..+++....+-.+.|
T Consensus 38 e~~s~~EIA~~-lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 38 TDYTLEEVGKQ-FDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHHH
Confidence 57999999995 9999998886654444444
No 196
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=56.14 E-value=5.6 Score=25.09 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCC----ceEEecCCCceEcCcCc
Q 025357 2 ADSYCADCKRLT----EVVFDHSAGDTICSECG 30 (254)
Q Consensus 2 ~~~~Cp~Cg~~~----~lv~D~~~G~~vC~~CG 30 (254)
.+..|..||... .++.- .|..||.+|=
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaG--pgv~IC~eCi 40 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAG--PSVYICDECV 40 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEEC--SSCEEEHHHH
T ss_pred CCcEecCCCCCHHHhcccCCC--CCCEehHHHH
Confidence 346899999732 33433 4678998884
No 197
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=56.01 E-value=16 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.+..||++. .+++..++.+.++.|.+.
T Consensus 34 ~~~~t~~ela~~-l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADI-FKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 557999999995 999999999999998654
No 198
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=55.67 E-value=28 Score=25.43 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
...+..+.-|+-.. -..+.++.++|+. .|++...+.+.+++.
T Consensus 10 ~~~i~~~~~~i~~~-~~~~~sl~~lA~~-~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIEDN-LESPLSLEKVSER-SGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHTT-TTSCCCCHHHHHH-SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCCHHHHHHH-HCcCHHHHHHHHHHH
Confidence 33444555555433 3456999999995 899999998887754
No 199
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=55.51 E-value=18 Score=28.75 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
|.-..+.+|.|.|++|||+ .+|++..++.+..+.|.+.=
T Consensus 14 I~~~~~~~g~~~s~~eia~-~lgl~~~tv~~~l~~Le~~G 52 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIAR-RFRITPRGALLHLIALEKKG 52 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHH-HHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHH-HcCCCcHHHHHHHHHHHHCC
Confidence 3334457889999999999 59999999988888887643
No 200
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=55.26 E-value=21 Score=28.19 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQL-VGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999875
No 201
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=55.23 E-value=18 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 216 l~lt~~~lA~~-lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQI-VGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999875
No 202
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=54.16 E-value=14 Score=29.23 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.|..+||+. .|++..++.|..++|.+.
T Consensus 186 ~~lt~~~lA~~-lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARL-VGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHH-hCCcHHHHHHHHHHHHHC
Confidence 46899999995 999999999999999875
No 203
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=54.12 E-value=23 Score=24.99 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=27.4
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.|.+.+..|||+ .+|++..+++++++.|.+.
T Consensus 30 ~g~~~s~~eLa~-~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIAN-QLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHH-TTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 566789999999 4999999999999999764
No 204
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=53.98 E-value=16 Score=26.42 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
+-+.|.+|||+. +|++..+|.|.-+.|
T Consensus 56 ~ge~TQREIA~~-lGiS~stISRi~r~L 82 (101)
T 1jhg_A 56 RGEMSQRELKNE-LGAGIATITRGSNSL 82 (101)
T ss_dssp HCCSCHHHHHHH-HCCCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHH-HCCChhhhhHHHHHH
Confidence 346999999995 999999999994333
No 205
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=53.91 E-value=8.5 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCCC--CCCCCceEEecCCCceEcCcCceeec
Q 025357 5 YCAD--CKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 5 ~Cp~--Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
.||. |++. |.+...|...|..||...+
T Consensus 310 aC~~~~C~kk---v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 310 ACASEGCNKK---VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp ECCSTTCCCB---EEECTTSCEEETTTTEEES
T ss_pred cCCcccCCCc---cccCCCccEECCCCCCcCc
Confidence 5999 9872 4556789999999998864
No 206
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=53.08 E-value=2.4 Score=22.59 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=13.6
Q ss_pred CcceeeehhhcccccCCC
Q 025357 233 FSSCMIFCSLWPYLSNPM 250 (254)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~ 250 (254)
+..|+|||.|=+-.-||.
T Consensus 8 DkEC~YfChlDiIWvn~~ 25 (26)
T 2ldf_A 8 DKECMYFCHQDVIWDEPX 25 (26)
T ss_dssp HHHHHHHHHHTCCCSCC-
T ss_pred ccceEEEEeccEEEeCCC
Confidence 345999999877777875
No 207
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=52.18 E-value=61 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 52 ~~t~~ela~~-l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRL-TAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999875
No 208
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=51.65 E-value=26 Score=27.60 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 160 cR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+..+.+.|..|+|+. ++++..+|.+-++.|.+.
T Consensus 30 L~~~~~~~s~~eLa~~-l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 30 LERSKEPVSGAQLAEE-LSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp HHHCSSCBCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3445668999999995 999999999999999763
No 209
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.59 E-value=30 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhc-----CCCHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVAN-----GTTKKEIGRAKEFI 191 (254)
Q Consensus 164 ~~p~tl~eIa~~~~-----~v~~~~i~~~~k~l 191 (254)
+.+.|..||++. + +|+..+|.+.++++
T Consensus 17 ~~~~t~~el~~~-l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDM-LKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHH-HHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH-HHHhCCCcCHHHHHHHHHHc
Confidence 458999999995 8 99999999888743
No 210
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=50.28 E-value=11 Score=29.86 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.|.|..+||+. .|++..++.|..++|.+.=
T Consensus 162 ~~~t~~~lA~~-lG~sr~tvsR~l~~L~~~g 191 (222)
T 1ft9_A 162 VDFTVEEIANL-IGSSRQTTSTALNSLIKEG 191 (222)
T ss_dssp ECCCHHHHHHH-HCSCHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHH-hCCcHHHHHHHHHHHHHCC
Confidence 46899999995 9999999999999998753
No 211
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=50.27 E-value=16 Score=28.57 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNI 221 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (254)
.|.|..+||+. .|++..++.|..++|.+.==++.... .+...|++ -+.+++..|
T Consensus 162 ~~~t~~~lA~~-lg~sr~tvsR~l~~l~~~g~I~~~~~-~i~i~d~~-~L~~~a~~l 215 (216)
T 4ev0_A 162 FQIRHHELAAL-AGTSRETVSRVLHALAEEGVVRLGPG-TVEVREAA-LLEEIAFGL 215 (216)
T ss_dssp EECCHHHHHHH-HTSCHHHHHHHHHHHHHTTSEEEETT-EEEESCHH-HHHHHHTTC
T ss_pred CCCCHHHHHHH-hCCCHHHHHHHHHHHHHCCCEEecCC-EEEEeCHH-HHHHHhhcc
Confidence 46899999995 99999999999999987533321111 12334553 455565544
No 212
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=49.81 E-value=25 Score=25.48 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.++.||++. .+++..++.+.++.|.+.
T Consensus 45 ~~~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 45 QDGLTQNDIAKA-LQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TTCEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-hCCCcccHHHHHHHHHHC
Confidence 368999999995 999999999999999874
No 213
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=49.72 E-value=6.9 Score=25.22 Aligned_cols=22 Identities=27% Similarity=0.943 Sum_probs=14.9
Q ss_pred CCCCCCCCCceEEecCCCceEcCcCce
Q 025357 5 YCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 5 ~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
.|..||+ .+ +- --..+|..||+
T Consensus 19 ~CrRCG~-~s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGE-KS--YH--TKKKVCSSCGF 40 (57)
T ss_dssp ECTTTCS-EE--EE--TTTTEETTTCT
T ss_pred cccccCC-hh--hh--ccccccccccC
Confidence 4888887 22 22 34678899987
No 214
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=49.45 E-value=26 Score=25.93 Aligned_cols=52 Identities=6% Similarity=-0.063 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
...|+.|+|+. .|++...|.+.-+ |.... .........++.++++.||++.+
T Consensus 15 ~gltq~elA~~-~gis~~~is~iE~------g~~~~---~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 15 LGMTLTELEQR-TGIKREMLVHIEN------NEFDQ---LPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp TTCCHHHHHHH-HCCCHHHHHHHHT------TCGGG---SSSGGGHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHC------CCCCC---CchhhhHHHHHHHHHHHhCCCHH
Confidence 45899999994 8999988876521 11100 00011123667777777777654
No 215
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=49.45 E-value=56 Score=23.69 Aligned_cols=31 Identities=0% Similarity=-0.022 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+.+.++.|||+. .+++..++.+.++.|.+.
T Consensus 28 ~~~~~s~~ela~~-l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKD-LKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-hCCChHHHHHHHHHHHHC
Confidence 5668999999995 999999999999999775
No 216
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.35 E-value=12 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 2 ADSYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 2 ~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
++..|..|+.. +..-.-.--|..||.|+=
T Consensus 10 ~~~~C~~C~~~----F~~~~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 10 DSDACMICSKK----FSLLNRKHHCRSCGGVFC 38 (73)
T ss_dssp CCSBCTTTCCB----CBTTBCCEECTTTCCEEC
T ss_pred cCCcccCCCCc----cCCccccccCCCCCEEEc
Confidence 34679999973 445567788888888874
No 217
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=49.12 E-value=8.6 Score=32.23 Aligned_cols=29 Identities=24% Similarity=0.676 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceE---EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV---FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv---~D~~~G~~vC~~CG~Vl 33 (254)
..||.||+ ..+. -+.--.+..|.+|+.-.
T Consensus 35 ~yCPnCG~-~~l~~f~nN~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGN-NPLNHFENNRPVADFYCNHCSEEF 66 (257)
T ss_dssp CCCTTTCC-SSCEEC----CCCEEECTTTCCEE
T ss_pred CcCCCCCC-hhhhhccCCCcccccccCCcchhh
Confidence 57999998 3331 11234568999998665
No 218
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=49.09 E-value=40 Score=23.33 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.....|.-||-+.-..+ +.++++|.+ .++.+..++..++-.|.++=++.
T Consensus 5 ~IG~nAG~VW~~L~~~~-~~s~~el~k-~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 5 IVGANAGKVWHALNEAD-GISIPELAR-KVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHHHHHHHHHHHCC-SBCHHHHHH-HHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHHhccC-CCCHHHHHH-HhCCCHHHHHHHHHHHhccCcee
Confidence 34567888888888766 899999999 59999999999999999876655
No 219
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.86 E-value=19 Score=20.67 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=19.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
.+.++||+. +|++..+|.+.++.
T Consensus 22 ~s~~~IA~~-lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRK-ISRSRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHC
T ss_pred CCHHHHHHH-HCcCHHHHHHHHhh
Confidence 689999995 99999999887654
No 220
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=48.81 E-value=6.3 Score=22.33 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=11.3
Q ss_pred CCCceEcCcCcee
Q 025357 20 SAGDTICSECGLV 32 (254)
Q Consensus 20 ~~G~~vC~~CG~V 32 (254)
..|+.+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4699999999887
No 221
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=48.70 E-value=3.7 Score=31.62 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=15.2
Q ss_pred EEecCCCceEcCcCceee
Q 025357 16 VFDHSAGDTICSECGLVL 33 (254)
Q Consensus 16 v~D~~~G~~vC~~CG~Vl 33 (254)
.+|..+|+++|..||...
T Consensus 102 e~~v~eg~L~C~~cg~~Y 119 (141)
T 2j6a_A 102 QTSIAEGEMKCRNCGHIY 119 (141)
T ss_dssp TEEEEEEEEECTTTCCEE
T ss_pred heeccCCEEECCCCCCcc
Confidence 356678999999999985
No 222
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=48.67 E-value=62 Score=23.69 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=25.9
Q ss_pred CCC-CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKP-RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p-~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+ .|+.+||+ ..++++.++.++++.|.+.
T Consensus 48 ~~~~ps~~~LA~-~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 48 GVLFPTPAELAE-RMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TCSSCCHHHHHH-TSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 444 79999999 4999999999999998764
No 223
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=48.45 E-value=46 Score=23.44 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=39.0
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHHHhc-CCCCCHHHHHHHhcCC-CHHHHHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAAC-LYIACRQE-NKPRTVKEFCSVANGT-TKKEIGRAKE 189 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAc-lY~AcR~~-~~p~tl~eIa~~~~~v-~~~~i~~~~k 189 (254)
|..+|..++++.....+ +|++.. |.++..+.--. +-.|+++- ....++.|||.. .|. +...+.+.|+
T Consensus 26 ~~~lA~~~~~S~~~l~r---~fk~~~------G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~-~Gf~~~s~F~r~Fk 95 (113)
T 3oio_A 26 TDDIAYYVGVSRRQLER---LFKQYL------GTVPSKYYLELRLNRARQLLQQTSKSIVQIGLA-CGFSSGPHFSSTYR 95 (113)
T ss_dssp HHHHHHHHTSCHHHHHH---HHHHHT------SSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHHHH------CcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-HCCCCHHHHHHHHH
Confidence 66778888888754443 566543 33332221111 11222211 235789999994 776 5777877776
Q ss_pred HH
Q 025357 190 FI 191 (254)
Q Consensus 190 ~l 191 (254)
+.
T Consensus 96 ~~ 97 (113)
T 3oio_A 96 NH 97 (113)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 224
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=48.26 E-value=29 Score=23.04 Aligned_cols=29 Identities=3% Similarity=-0.084 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhc-----CCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVAN-----GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~-----~v~~~~i~~~~k~l~~~ 194 (254)
.|.++.||++. + +++..+|.|..+.|.+.
T Consensus 32 ~~~s~~el~~~-l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 32 HHVSAEDLYKR-LIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SSBCHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHHhCCCCCHhhHHHHHHHHHHC
Confidence 68999999995 7 89999999999888764
No 225
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=48.15 E-value=28 Score=22.88 Aligned_cols=45 Identities=2% Similarity=-0.048 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. . .+ .+.+.+++..|+++.+
T Consensus 25 gltq~~lA~~-~gvs~~~is~~e~------g~~------~--~~-~~~~~~ia~~l~v~~~ 69 (80)
T 3kz3_A 25 GLSYESVADK-MGMGQSAVAALFN------GIN------A--LN-AYNAALLAKILKVSVE 69 (80)
T ss_dssp TCCHHHHHHH-TTSCHHHHHHHHT------TSS------C--CC-HHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHH-hCcCHHHHHHHHc------CCC------C--CC-HHHHHHHHHHhCCCHH
Confidence 4789999995 9999999877632 111 1 12 3788899999988754
No 226
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=48.03 E-value=25 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=26.0
Q ss_pred C-CCCHHHHHHHhcCCCH-HHHHHHHHHHHHH
Q 025357 165 K-PRTVKEFCSVANGTTK-KEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~-p~tl~eIa~~~~~v~~-~~i~~~~k~l~~~ 194 (254)
. |.|..|||+. .|++. .++.|..++|.+.
T Consensus 167 ~~~~t~~~lA~~-lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 167 LDNLTMQELGYS-SGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CSCCCHHHHHHH-TTCCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHH-hCCChHHHHHHHHHHHHHC
Confidence 5 7999999995 99999 7999999999774
No 227
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=47.93 E-value=33 Score=28.28 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch-----hc-----ccccccCCCCHHHHHHHHH
Q 025357 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA-----EM-----GQSVEMGTIHASDYLVIFL 218 (254)
Q Consensus 149 ~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~-----~~-----~~~~~~~~~~p~~~i~r~~ 218 (254)
..++=|.||.+ +.|+++++++.+ .+++..++..++..|.+.+.- +. +..+. ...+-..||.++.
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~-l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~-T~~e~~~~v~~~~ 90 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAA-TEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMY-TRARFAPYVEKLL 90 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHH-HTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEE-ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEE-EcHHHHHHHHHHh
Confidence 45677878864 789999999995 899999999999999887732 21 11121 2245678999987
Q ss_pred hh---cCCCcchh
Q 025357 219 LN---IFKNFFFL 228 (254)
Q Consensus 219 ~~---L~l~~~v~ 228 (254)
.. -.|+....
T Consensus 91 ~~~~~~~Ls~aaL 103 (219)
T 2z99_A 91 LDGARTKLTRAAL 103 (219)
T ss_dssp HHHHSCCCCHHHH
T ss_pred cccccCccCHHHH
Confidence 52 34555443
No 228
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=47.74 E-value=45 Score=26.94 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..|.+|||.. .++++.+++...+.+.+.|+..
T Consensus 188 g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 188 GKTMEEIADV-EGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 4789999995 9999999999999999999976
No 229
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=47.56 E-value=6.4 Score=29.25 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
..||.||..+.+-.........|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 569999984334444455567799999876443
No 230
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=47.38 E-value=8.7 Score=33.48 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=27.1
Q ss_pred cCCCceEcCcCceee--cccccccCcccccccC
Q 025357 19 HSAGDTICSECGLVL--EAYSVDETSEWRIFAN 49 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl--~e~~id~~~ewr~f~~ 49 (254)
.+.|..+|..||.-| .+.-+|+|.-|.+|.+
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~ 237 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSR 237 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESS
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCc
Confidence 468999999999987 6667899999999984
No 231
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=47.26 E-value=71 Score=22.38 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 025357 103 DRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYI 158 (254)
Q Consensus 103 ~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~ 158 (254)
+..+.++...++++.+--.+|.++...|.+.-..+.+.+ .++..-||.++++
T Consensus 9 e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAA~aIs~ 60 (89)
T 2qsb_A 9 QNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQEN----ESLDLRCATVLSM 60 (89)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTT----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHH
Confidence 567788888999999999999999999999998887654 5667778888876
No 232
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=47.15 E-value=33 Score=27.94 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..|.+|||+. +++++.+++...+.+.+.|+..
T Consensus 190 G~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 190 GKTYGEIGLI-LSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHhCCC
Confidence 4789999995 9999999999999999999876
No 233
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=46.96 E-value=73 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
-+.++.|+++. .+++..++.+.++.|.+ .|+-
T Consensus 44 ~~~s~~ela~~-l~is~stvsr~l~~Le~-~Glv 75 (119)
T 2lkp_A 44 GPLPVTDLAEA-IGMEQSAVSHQLRVLRN-LGLV 75 (119)
T ss_dssp CCCCHHHHHHH-HSSCHHHHHHHHHHHHH-HCSE
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCCE
Confidence 36899999995 89999999999999988 6654
No 234
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=46.91 E-value=5.8 Score=30.35 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.0
Q ss_pred CceEEecCCCceEcCcCceeecc
Q 025357 13 TEVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 13 ~~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
..+..+...+...|.+||...+-
T Consensus 60 A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 60 AEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp CEEEEEEECCEEEETTTCCEEEG
T ss_pred CEEEEEecCCcEECCCCCCEEec
Confidence 36777888999999999999753
No 235
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=46.82 E-value=12 Score=33.73 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCCCCCCC-CceEEecCCCceEcCcCce
Q 025357 5 YCADCKRL-TEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 5 ~Cp~Cg~~-~~lv~D~~~G~~vC~~CG~ 31 (254)
.||.|+.. .+..+++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 59999864 3578889999999999993
No 236
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=46.71 E-value=30 Score=24.00 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=17.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRA 187 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~ 187 (254)
.+.+.||+ +.|+++.+|.|.
T Consensus 25 ~gQ~~vAe-~~GvdeStISR~ 44 (83)
T 1zs4_A 25 LGTEKTAE-AVGVDKSQISRW 44 (83)
T ss_dssp HCHHHHHH-HHTSCHHHHHHH
T ss_pred HhhHHHHH-HhCCCHHHHhhh
Confidence 45889999 599999999995
No 237
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=46.67 E-value=25 Score=24.33 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 150 AIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 150 ~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
..+-..|- ..+.++ .|..|||+. +|+++.++++.+..|.+.=-+
T Consensus 17 ~~~~~IL~-lL~~~g--~sa~eLAk~-LgiSk~aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 17 EIVCEAIK-TIGIEG--ATAAQLTRQ-LNMEKREVNKALYDLQRSAMV 60 (82)
T ss_dssp HHHHHHHH-HHSSST--EEHHHHHHH-SSSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHH-HHHHcC--CCHHHHHHH-HCcCHHHHHHHHHHHHHCCCE
Confidence 34444332 333444 999999995 999999999999998765433
No 238
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=46.62 E-value=37 Score=21.64 Aligned_cols=46 Identities=7% Similarity=-0.114 Sum_probs=33.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.|+|+. .|++..+|.+..+ |.. . ...+.+.++|..|+++.+-
T Consensus 21 glsq~~lA~~-~gis~~~is~~e~------g~~------~---~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 21 GKTNLWLTET-LDKNKTTVSKWCT------NDV------Q---PSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTSCGGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHHH
Confidence 4789999995 8999999887632 111 1 2357888999999987653
No 239
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=46.55 E-value=29 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-|.++.||++. .+++..++.+..+.|.+.
T Consensus 39 ~~~~t~~ela~~-l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 39 DKPLTISDIMEE-LKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp SSCEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 458999999995 999999999999999764
No 240
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=45.96 E-value=38 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..|.+|||.. .++++.+++...+.+.+.|+..
T Consensus 190 g~s~~eIa~~-l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 190 GKTASVTANL-TGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp TCCHHHHHHH-HCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 4789999995 9999999999999999999876
No 241
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=45.93 E-value=72 Score=23.09 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.3
Q ss_pred hcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 162 ~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++ +.++.||++. .+++..++.+.++.|.+.
T Consensus 51 ~~~-~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDI-LGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 344 8999999995 999999999999999875
No 242
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=45.89 E-value=6.6 Score=29.09 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.3
Q ss_pred CCCCCCCCC-CceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRL-TEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~-~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|.+||.. +.+---..+|..+|..||+...
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 679999974 2232334678999999999764
No 243
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=45.85 E-value=18 Score=25.34 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
.-..++.|+++. ++|++.+|++-+.+|.+.=
T Consensus 14 ~g~vsv~eLA~~-l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 14 QGRMEAKQLSAR-LQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp SCSEEHHHHHHH-TTCCHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 346999999995 9999999999998887643
No 244
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=45.49 E-value=37 Score=21.09 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |.. .++ .. +.+++..|+++.+-
T Consensus 14 glsq~~lA~~-~gis~~~i~~~e~------g~~------~~~---~~-l~~la~~l~~~~~~ 58 (69)
T 1r69_A 14 GLNQAELAQK-VGTTQQSIEQLEN------GKT------KRP---RF-LPELASALGVSVDW 58 (69)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSC------SSC---TT-HHHHHHHTTCCHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------CCc---hH-HHHHHHHHCcCHHH
Confidence 4789999995 8999998877632 211 121 23 89999999987653
No 245
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=45.28 E-value=35 Score=20.90 Aligned_cols=46 Identities=4% Similarity=-0.021 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |-. . .+.+.+.+++..|+++.+-
T Consensus 14 g~s~~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 14 KISQSELAAL-LEVSRQTINGIEK------NKY------N---PSLQLALKIAYYLNTPLED 59 (66)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSC------C---CCHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHHH
Confidence 4789999995 8999998877632 211 1 1357789999999987653
No 246
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=45.19 E-value=14 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
..|..||+ -| ..+| +.|.+||++.=.+
T Consensus 36 t~C~~C~~--~l---~~qG-~kC~~C~~~cHkk 62 (72)
T 2fnf_X 36 GWCDLCGR--EV---LRQA-LRCANCKFTCHSE 62 (72)
T ss_dssp CBCTTTSS--BC---SSCC-EECTTSSCEECTG
T ss_pred cchhhhhH--HH---HhCc-CccCCCCCeechh
Confidence 57999987 23 4566 6799999987544
No 247
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=44.72 E-value=24 Score=23.94 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=26.5
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~ 193 (254)
.+-|.+..||++. .+++..++.+.++.|.+
T Consensus 35 ~~~~~s~~ela~~-l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 35 GSPGTSAGELTRI-TGLSASATSQHLARMRD 64 (99)
T ss_dssp TCCSEEHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred hCCCcCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 3558999999995 89999999999999975
No 248
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=44.49 E-value=14 Score=29.79 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
..||.||. .-+...+. ...-|..||+..
T Consensus 114 ~~Cp~Cg~-g~fma~h~-dR~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKHY-DRHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCS-SCEEEECS-SCEEETTTCCCB
T ss_pred ccCCccCC-CccccCcc-CCCccCCceeEE
Confidence 45999996 44445544 466999999986
No 249
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=44.34 E-value=11 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.719 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|..|++ . ++ .| +.|.+|++..=
T Consensus 15 t~C~~C~k--~-i~---~G-~kC~~Ck~~cH 38 (49)
T 1kbe_A 15 QVCNVCQK--S-MI---FG-VKCKHCRLKCH 38 (49)
T ss_dssp CCCSSSCC--S-SC---CE-EEETTTTEEES
T ss_pred cCccccCc--e-eE---Cc-CCCCCCCCccc
Confidence 67999987 2 34 57 78999998863
No 250
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.22 E-value=36 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 58 ~~t~~ela~~-l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEF-LSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHH-TTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999875
No 251
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=43.91 E-value=83 Score=22.24 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 025357 102 PDRNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIA 159 (254)
Q Consensus 102 ~~r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~A 159 (254)
.+..+.++...++++.+--.+|.++...|.+.-..+.+.+ .++..-||.++++-
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~----~~~~vRAAtAIs~L 65 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEE----QELIVRSATAIQYL 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTT----SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCC----cchhHHHHHHHHHH
Confidence 4567888888999999999999999999999888876543 56777788888763
No 252
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.82 E-value=43 Score=25.02 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.+..|||+. .|++..++.+.+++|.+.
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKI-TGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHH-HCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 347999999995 999999999999999765
No 253
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.82 E-value=25 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
..+.+|||.. +|++..++.+.+.+..+.|.
T Consensus 124 g~s~~EIA~~-lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 124 GYSYREIATI-LSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 4699999995 99999999877665555543
No 254
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=43.80 E-value=43 Score=20.62 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. .| +.+.+.+++..|+++.+
T Consensus 18 g~s~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 18 KIRQAALGKM-VGVSNVAISQWER------SET------EP---NGENLLALSKALQCSPD 62 (68)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---BHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCCHH
Confidence 3689999995 8999988876632 211 11 35778999999988764
No 255
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=43.75 E-value=38 Score=24.79 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.++.|||+. .+++..++.+.++.|.+.
T Consensus 21 ~~~~~~ela~~-l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 21 GYARVSDIAEA-LAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp SSCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 36999999995 999999999999999773
No 256
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.62 E-value=71 Score=21.70 Aligned_cols=30 Identities=3% Similarity=-0.112 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.++.||++. .+++..++.+.++.|.+.
T Consensus 28 ~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 28 GNDVYIQYIASK-VNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp TCCEEHHHHHHH-SSSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 445999999995 999999999999998764
No 257
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=43.58 E-value=58 Score=20.44 Aligned_cols=45 Identities=4% Similarity=-0.018 Sum_probs=32.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 26 g~s~~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~l~~~l~~~~~ 70 (74)
T 1y7y_A 26 GLSQETLAFL-SGLDRSYVGGVER------GQR------N---VSLVNILKLATALDIEPR 70 (74)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TCS------C---CBHHHHHHHHHHTTSCGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHC------CCC------C---CCHHHHHHHHHHhCcCHH
Confidence 4789999995 8999988877532 111 1 235778999999998765
No 258
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=43.46 E-value=18 Score=23.08 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
..|..||+ ++ ..+| +.|.+||++.=.
T Consensus 23 t~C~~C~~---~i--~kqg-~kC~~C~~~cH~ 48 (59)
T 1rfh_A 23 GWCDLCGR---EV--LRQA-LRCANCKFTCHS 48 (59)
T ss_dssp EECTTTCS---EE--CSCC-EECTTTSCEECH
T ss_pred eEchhcch---hh--hhCc-cEeCCCCCeEeh
Confidence 46999986 23 4566 679999998743
No 259
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=43.32 E-value=28 Score=25.66 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=27.3
Q ss_pred hcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 162 ~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++.+.++.||++. .+++..++.+.++.|.+.
T Consensus 50 ~~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 50 EQAEGVNQRGVAAT-MGLDPSQIVGLVDELEER 81 (150)
T ss_dssp HSTTCCCSHHHHHH-HTCCHHHHHHHHHHHHTT
T ss_pred hCCCCcCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 35567899999995 999999999999998763
No 260
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=43.04 E-value=26 Score=25.44 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 160 CRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 160 cR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+..+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 47 ~~~~~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 80 (127)
T 2frh_A 47 SENKEKEYYLKDIINH-LNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp HHTCCSEEEHHHHHHH-SSSHHHHHHHHHHHHHHT
T ss_pred HhccCCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 3443467999999995 999999999999999764
No 261
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=42.95 E-value=47 Score=21.06 Aligned_cols=46 Identities=17% Similarity=0.048 Sum_probs=33.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |-. . .+.+.+.+++..|+++.+-
T Consensus 23 g~s~~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~ia~~l~~~~~~ 68 (76)
T 3bs3_A 23 QRTNRWLAEQ-MGKSENTISRWCS------NKS------Q---PSLDMLVKVAELLNVDPRQ 68 (76)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTSCGGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHHH
Confidence 4789999995 8999988876632 211 1 1357789999999987653
No 262
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=42.75 E-value=5.1 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=11.0
Q ss_pred eCcceeeehhhcccccCC
Q 025357 232 DFSSCMIFCSLWPYLSNP 249 (254)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~ 249 (254)
.+..|+|||.|=+-.-|+
T Consensus 7 ~DkEC~YfChldiIWvnt 24 (26)
T 1edn_A 7 MDKECVYFCHLDIIWXXX 24 (26)
T ss_dssp SGGGSTTTSTTTSCC---
T ss_pred ccccEEEEEeccEEEeec
Confidence 345699999976655555
No 263
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=42.59 E-value=58 Score=20.32 Aligned_cols=45 Identities=4% Similarity=-0.177 Sum_probs=32.9
Q ss_pred CCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANG--TTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~--v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .| ++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 21 glsq~~lA~~-~g~~is~~~i~~~e~------g~~------~---~~~~~l~~la~~l~v~~~ 67 (71)
T 2ewt_A 21 GLSLHGVEEK-SQGRWKAVVVGSYER------GDR------A---VTVQRLAELADFYGVPVQ 67 (71)
T ss_dssp TCCHHHHHHH-TTTSSCHHHHHHHHH------TCS------C---CCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHH-HCCcCCHHHHHHHHC------CCC------C---CCHHHHHHHHHHHCcCHH
Confidence 4789999995 89 99998877632 211 1 135788999999998764
No 264
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.55 E-value=38 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.8
Q ss_pred hcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 162 ~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+-+.+..|||+. .|++..++++.+++|.+.
T Consensus 13 ~~~~~~s~~~la~~-lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 13 QEDSTLAVADLAKK-VGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp TTCSCSCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 34567899999995 999999999999999874
No 265
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=42.54 E-value=36 Score=24.20 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCCHHHHHH-HhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKPRTVKEFCS-VANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~-~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+....++ +.|+.||++ . .+++..++++..+.|.+.
T Consensus 21 iL~~L~~~~-~~t~~~Lae~~-l~~drstvsrnl~~L~r~ 58 (95)
T 1bja_A 21 ILITIAKKD-FITAAEVREVH-PDLGNAVVNSNIGVLIKK 58 (95)
T ss_dssp HHHHHHHST-TBCHHHHHHTC-TTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCC-CCCHHHHHHHH-hcccHHHHHHHHHHHHHC
Confidence 333444556 999999999 6 899999999999988765
No 266
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.40 E-value=8.3 Score=25.26 Aligned_cols=23 Identities=26% Similarity=0.869 Sum_probs=15.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
..|..||+ .+ +- --...|..||+
T Consensus 18 ~lCrRCG~-~s--yH--~qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGR-VS--YN--VKKGYCAACGF 40 (62)
T ss_dssp CBCSSSCS-BC--EE--TTTTEETTTCT
T ss_pred eeecccCc-ch--hc--cccccccccCC
Confidence 46888887 32 22 34577888886
No 267
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=42.36 E-value=36 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 54 ~~t~~ela~~-l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 54 GATAPQLGAA-LQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999875
No 268
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=42.27 E-value=31 Score=24.90 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=22.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
.|.+|||+. .|++..++.+.+.+..+.|.
T Consensus 42 ~s~~EIA~~-lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 42 YSLSEIADT-FNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp CCHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 689999995 99999888876665555553
No 269
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.02 E-value=80 Score=21.83 Aligned_cols=68 Identities=7% Similarity=-0.016 Sum_probs=39.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHHHhc-CCCCCHHHHHHHhcCC-CHHHHHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAAC-LYIACRQE-NKPRTVKEFCSVANGT-TKKEIGRAKE 189 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAc-lY~AcR~~-~~p~tl~eIa~~~~~v-~~~~i~~~~k 189 (254)
|..+|..++++.....+ +|++... .++..+.-.. +-.|.++- ....++.|||.. .|. +...+.++|+
T Consensus 23 ~~~lA~~~~~S~~~l~r---~fk~~~G------~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~~-~Gf~~~s~F~r~Fk 92 (107)
T 2k9s_A 23 IASVAQHVCLSPSRLSH---LFRQQLG------ISVLSWREDQRISQAKLLLSTTRMPIATVGRN-VGFDDQLYFSRVFK 92 (107)
T ss_dssp HHHHHHHTTSCHHHHHH---HHHHHHS------SCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH-TTCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH---HHHHHHC------cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-hCCCCHHHHHHHHH
Confidence 67788889998755443 6666543 3333222111 22222211 235889999995 776 4677877776
Q ss_pred H
Q 025357 190 F 190 (254)
Q Consensus 190 ~ 190 (254)
+
T Consensus 93 ~ 93 (107)
T 2k9s_A 93 K 93 (107)
T ss_dssp H
T ss_pred H
Confidence 5
No 270
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=41.82 E-value=41 Score=25.10 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhc-----c-c--c-----cccCCCCHHHHHHHHHhhcCCCcchhhe
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM-----G-Q--S-----VEMGTIHASDYLVIFLLNIFKNFFFLFV 230 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~-----~-~--~-----~~~~~~~p~~~i~r~~~~L~l~~~v~~v 230 (254)
+.+.+..|||+. .|++..++.+.+++|.+.=-+.. + . . +-.-..+|. -...|...|.--++|.++
T Consensus 21 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~-~~~~~~~~l~~~peV~~~ 98 (151)
T 2dbb_A 21 NSRLTYRELADI-LNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPS-DADKVISEISDIEYVKSV 98 (151)
T ss_dssp CTTCCHHHHHHH-TTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHH-HHHHHHHHHTTCTTEEEE
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCC-CHHHHHHHHHcCCCeEEE
Confidence 457999999995 99999999999999977421110 0 0 0 000013443 457888888766777665
No 271
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=41.05 E-value=17 Score=28.57 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=18.4
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
..||.|++ .++++. |..+|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 57999995 688874 999998 666
No 272
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.02 E-value=31 Score=25.30 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-+.+..||++. .|++..++.+.+++|.+.
T Consensus 16 ~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKK-LGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 446899999995 899999999999999764
No 273
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=40.94 E-value=10 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.308 Sum_probs=20.2
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|+.||.. . ........+|..||.+..
T Consensus 11 ~~Cw~C~~~-~--~~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGP-W--GPGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCB-C--CSSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCC-c--ccccccccccccccccCC
Confidence 579999972 1 112467899999998874
No 274
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=40.86 E-value=54 Score=23.76 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-+.++.+|++. .+++..++.+.++.|.+.
T Consensus 48 ~~~~~~~~la~~-l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAA-ERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 458999999995 999999999999999875
No 275
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=40.72 E-value=47 Score=20.71 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |. ..+ + ..+.+++..|+++.+-
T Consensus 16 glsq~~lA~~-~gis~~~i~~~e~------g~-------~~~--~-~~l~~i~~~l~~~~~~ 60 (71)
T 1zug_A 16 KMTQTELATK-AGVKQQSIQLIEA------GV-------TKR--P-RFLFEIAMALNCDPVW 60 (71)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TC-------CSS--C-STHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CC-------CCC--h-HHHHHHHHHHCCCHHH
Confidence 4789999995 8999998876632 21 111 1 2389999999987543
No 276
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=40.69 E-value=45 Score=22.77 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~ 193 (254)
-|.+..||++. .|++..++.+..+.|.+
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAK-LQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 58999999995 89999999999999976
No 277
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.56 E-value=31 Score=23.54 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.+..||++. .+++..++.+.++.|.+.
T Consensus 33 ~~~s~~ela~~-l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARE-LDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 46999999995 899999999999999774
No 278
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=40.27 E-value=44 Score=24.36 Aligned_cols=28 Identities=11% Similarity=-0.043 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|.++.||++. .+++..++.+.++.|.+.
T Consensus 56 ~~t~~ela~~-l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNK-MYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 7999999995 999999999999999875
No 279
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=40.21 E-value=50 Score=25.42 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+.+..|++=+..+.- ...|+++|++. +||++.+|-+.|.
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~-aGvs~~tlY~~F~ 61 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAA-AGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHH-HTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHH-hCCCHHHHHHHcC
Confidence 45667777777777767 88999999995 8999999987764
No 280
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=40.06 E-value=29 Score=25.54 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+++..+..+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 47 L~~l~~~~~~~~t~~eLa~~-l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 47 IGYIYENQESGIIQKDLAQF-FGRRGASITSMLQGLEKK 84 (148)
T ss_dssp HHHHHHHTTTCCCHHHHHHC-------CHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 33344444468999999994 999999999999999774
No 281
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=40.02 E-value=63 Score=21.18 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=33.9
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |.. .+ ..+.+.+++..|+++.+.
T Consensus 25 glsq~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~i~~~l~~~~~~ 70 (88)
T 2wiu_B 25 GWTQSELAKK-IGIKQATISNFEN------NPD------NT---TLTTFFKILQSLELSMTL 70 (88)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHH------CGG------GC---BHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CCC------CC---CHHHHHHHHHHhCCCHHH
Confidence 4789999995 8999999887643 211 11 257788999999987654
No 282
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=39.94 E-value=69 Score=21.29 Aligned_cols=49 Identities=2% Similarity=-0.160 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchhh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFLF 229 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~ 229 (254)
...|+.|+|+. .|++..+|.+.- -|.. . ...+.+.+++..|+++..+..
T Consensus 26 ~gltq~elA~~-~gis~~~is~~E------~G~~------~---p~~~~l~~ia~~l~v~~~~~~ 74 (86)
T 3eus_A 26 AGLTQADLAER-LDKPQSFVAKVE------TRER------R---LDVIEFAKWMAACEGLDVVSE 74 (86)
T ss_dssp TTCCHHHHHHH-TTCCHHHHHHHH------TTSS------C---CBHHHHHHHHHHTTCGGGHHH
T ss_pred cCCCHHHHHHH-hCcCHHHHHHHH------CCCC------C---CCHHHHHHHHHHcCCCcHHHH
Confidence 35899999995 999999887762 1211 1 135778899999998776543
No 283
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=39.88 E-value=51 Score=20.98 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=32.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |-. .-+.+.+.+++..|+++.+
T Consensus 23 glsq~~lA~~-~gis~~~i~~~e~------g~~---------~~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 23 GVSQEELADL-AGLHRTYISEVER------GDR---------NISLINIHKICAALDIPAS 67 (77)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TCS---------CCBHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHC------CCC---------CCCHHHHHHHHHHhCcCHH
Confidence 4789999995 8999998877632 111 1235778899999988754
No 284
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=39.72 E-value=54 Score=20.72 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=32.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |.. .| +.+.+.+++..|+++.+-
T Consensus 18 gls~~~lA~~-~gis~~~i~~~e~------g~~------~~---~~~~l~~ia~~l~~~~~~ 63 (76)
T 1adr_A 18 KIRQAALGKM-VGVSNVAISQWER------SET------EP---NGENLLALSKALQCSPDY 63 (76)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSS------CC---CHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------CC---CHHHHHHHHHHHCcCHHH
Confidence 4789999995 8999988876632 211 11 356788999999887653
No 285
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=39.71 E-value=14 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.6
Q ss_pred cCCCceEcCcCceeec
Q 025357 19 HSAGDTICSECGLVLE 34 (254)
Q Consensus 19 ~~~G~~vC~~CG~Vl~ 34 (254)
.+.|...|.-||+...
T Consensus 36 ~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 36 EDTGWVECPYCDCKYV 51 (67)
T ss_dssp TTTSEEEETTTTEEEE
T ss_pred CCCCeEECCCCCCEEE
Confidence 3589999999999874
No 286
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=39.61 E-value=42 Score=25.41 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-+.++.||++. .+++..++.+.+++|.+.
T Consensus 65 ~~~~~t~~eLa~~-l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKA-IGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHH-HCCCHhhHHHHHHHHHHC
Confidence 4557999999995 999999999999999774
No 287
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=39.61 E-value=34 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
.|.+|||.. .|++..++.+...+..+.|.
T Consensus 39 ~s~~EIA~~-lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 39 YSLAEIADE-FGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 789999995 99999998877666655553
No 288
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=39.44 E-value=42 Score=24.93 Aligned_cols=30 Identities=3% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.+..|||+. .|++..++.+.+++|.+.
T Consensus 17 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRK-IKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 457999999995 999999999999999764
No 289
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.20 E-value=56 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-|.++.||++. .+++..++.+.++.|.+.
T Consensus 49 ~~~~~t~~~la~~-l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQS-VGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHH-hCCChhhHHHHHHHHHHC
Confidence 4568999999995 999999999999999874
No 290
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=39.15 E-value=34 Score=24.90 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|.++.||++. .+++..++.+.++.|.+.
T Consensus 51 ~~t~~eLa~~-l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQ-MCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHH-HC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 7999999995 899999999999999774
No 291
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.04 E-value=48 Score=23.76 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 45 ~~~~~ela~~-l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 45 PLHQLALQER-LQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 899999999999999874
No 292
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=39.04 E-value=34 Score=24.93 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 54 ~~~~~~la~~-l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQ-LYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHT-TTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCcCcHHHHHHHHHHC
Confidence 7999999995 999999999999999875
No 293
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=38.94 E-value=45 Score=24.12 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|.++.||++. .+++..++.+.++.|.+.
T Consensus 43 ~~t~~~la~~-l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 43 GIIQEKIAEL-IKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 7999999995 899999999999999875
No 294
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.68 E-value=36 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.+..||++. .+++..++.+.++.|.+.
T Consensus 42 ~~~~~~eLa~~-l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQT-LSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 46899999995 899999999999998764
No 295
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=38.65 E-value=39 Score=22.82 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHL 195 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l 195 (254)
-+.+..||++. .+++..++.+..+.|.+.-
T Consensus 29 ~~~~~~ela~~-l~is~~tvs~~l~~L~~~g 58 (100)
T 1ub9_A 29 RKAPFSQIQKV-LDLTPGNLDSHIRVLERNG 58 (100)
T ss_dssp SEEEHHHHHHH-TTCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHH-HCcCHHHHHHHHHHHHHCC
Confidence 37999999995 9999999999999998753
No 296
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=38.54 E-value=12 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.628 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +.. ....-|..+|.+|.-|-
T Consensus 26 ~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiH 55 (140)
T 2olm_A 26 RKCFDCDQR-GPTYVNMTVGSFVCTSCSGSL 55 (140)
T ss_dssp GSCTTTCSS-CCCEEETTTTEEECHHHHHHH
T ss_pred CcCCCCCCC-CCCceeeccCEEEchhccchh
Confidence 468888873 332 33466888888887664
No 297
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.49 E-value=20 Score=26.32 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceEEecCCCce-EcCcCceee
Q 025357 4 SYCADCKRLTEVVFDHSAGDT-ICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~-vC~~CG~Vl 33 (254)
.+|.+||.. +....-.. .|..||--.
T Consensus 74 ~~C~~CG~~----~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 74 LECKDCSHV----FKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp EECSSSSCE----ECSCCSTTCCCSSSSSCC
T ss_pred EEcCCCCCE----EeCCCCCCCcCccccCCC
Confidence 469999972 33344556 899999873
No 298
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=38.45 E-value=13 Score=22.54 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=12.8
Q ss_pred ecCCCceEcCcCceeec
Q 025357 18 DHSAGDTICSECGLVLE 34 (254)
Q Consensus 18 D~~~G~~vC~~CG~Vl~ 34 (254)
|...+.++|..||.|--
T Consensus 1 ~~~~~~~~CE~CG~~g~ 17 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIVGT 17 (43)
T ss_dssp CCSCCEEECTTTCCEEE
T ss_pred CCCCceehhhhhcCcch
Confidence 34567789999998843
No 299
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.43 E-value=21 Score=24.43 Aligned_cols=29 Identities=24% Similarity=0.643 Sum_probs=20.6
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 469999873 45556667888888887543
No 300
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=38.41 E-value=47 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.+..|||+. .|++..++.+.+++|.+.
T Consensus 20 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 20 NARTAYAELAKQ-FGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CTTSCHHHHHHH-HTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHc
Confidence 357999999995 999999999999999774
No 301
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.39 E-value=27 Score=29.55 Aligned_cols=47 Identities=4% Similarity=0.014 Sum_probs=31.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
.|++|||+. +|||..|+.++++. -. .-.....+-|.+.+.+||--+.
T Consensus 1 ~ti~diA~~-agVS~~TVSrvLn~------~~------~vs~~tr~rV~~~a~~lgY~pn 47 (340)
T 1qpz_A 1 ATIKDVAKR-ANVSTTTVSHVINK------TR------FVAEETRNAVWAAIKELHYSPS 47 (340)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHHT------CS------CCCHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHH-HCCCHHHHHHHHcC------cC------CCCHHHHHHHHHHHHHhCCCCC
Confidence 389999995 89999999999762 00 0012345566677777766443
No 302
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=38.24 E-value=74 Score=20.98 Aligned_cols=45 Identities=9% Similarity=-0.008 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
....|+.++|+. .|++..+|.+... -+ .|.. ...+++.||++.+-
T Consensus 20 ~~glT~~~LA~~-~Gvs~stls~~~~---------------~~--~p~~-~~~IA~aLgv~~~~ 64 (74)
T 1neq_A 20 KRKLSLSALSRQ-FGYAPTTLANALE---------------RH--WPKG-EQIIANALETKPEV 64 (74)
T ss_dssp TTSCCHHHHHHH-HSSCHHHHHHTTT---------------SS--CHHH-HHHHHHHTTSCHHH
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc---------------CC--CccH-HHHHHHHHCcCHHH
Confidence 335899999995 9999999986511 11 2322 12388888887654
No 303
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=38.20 E-value=30 Score=24.78 Aligned_cols=29 Identities=3% Similarity=0.131 Sum_probs=25.1
Q ss_pred CCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+ +.+++++. +||+..+++++++.|...
T Consensus 31 ~~lPs~~~La~~-~~vSr~tvr~al~~L~~~ 60 (113)
T 3tqn_A 31 EMIPSIRKISTE-YQINPLTVSKAYQSLLDD 60 (113)
T ss_dssp CEECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 344 89999995 999999999999999874
No 304
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=38.07 E-value=57 Score=22.93 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 124 TTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 124 ~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
....+.+..+++.+.+.. ...+.. ++. .-|.++.||++. .+++..++.+.++.|.+.
T Consensus 9 ~~~~~~~~~~~~al~~~~------r~~IL~---~L~----~~~~s~~eLa~~-lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 9 AALLDQVARVGKALANGR------RLQILD---LLA----QGERAVEAIATA-TGMNLTTASANLQALKSG 65 (108)
T ss_dssp HHHHHHHHHHHHHHTTST------THHHHH---HHT----TCCEEHHHHHHH-HTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCHH------HHHHHH---HHH----cCCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345566677777764321 122222 121 257899999995 899999999999999763
No 305
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=38.03 E-value=46 Score=24.70 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. .+++..++.+.++.|.+.
T Consensus 65 ~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIF-AVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 37999999995 899999999999999875
No 306
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=37.99 E-value=11 Score=28.62 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +.. ....-|..+|.+|.-|-
T Consensus 28 ~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiH 57 (134)
T 2iqj_A 28 KFCADCQSK-GPRWASWNIGVFICIRCAGIH 57 (134)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHH
T ss_pred CcCCcCcCC-CCCeEEecCCEEEhHhhhHHH
Confidence 458888873 332 33467888888887764
No 307
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.97 E-value=30 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=25.3
Q ss_pred CCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|..+ +.+++|+. +||+..+++++|+.|...
T Consensus 35 G~~LPser~La~~-~gVSr~tVReAl~~L~~e 65 (134)
T 4ham_A 35 GEKILSIREFASR-IGVNPNTVSKAYQELERQ 65 (134)
T ss_dssp TCEECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 4445 78899995 999999999999999764
No 308
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.86 E-value=81 Score=20.39 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.|+|+. .|++..+|.+..+ |.. . -..+.+.++|..|+++.+
T Consensus 27 gltq~elA~~-~gis~~~is~~e~------g~~------~---~~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 27 GITQKELAAR-LGRPQSFVSKTEN------AER------R---LDVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHC------CCC------C---CCHHHHHHHHHHcCCCHH
Confidence 4789999995 8999988877622 211 1 135778888888888754
No 309
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=37.76 E-value=51 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=27.0
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-+.+..||++. .|++..++.+.+++|.+.
T Consensus 14 ~~~~~~~~ela~~-lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 14 YNAKYSLDEIARE-IRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TCTTSCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3457999999995 999999999999999774
No 310
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.62 E-value=15 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 1 MADSYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 1 ~~~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
|..-.|-.||..-+...-.-.-.+-|..||+=+
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 344567888763111011123456788887643
No 311
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=37.61 E-value=9.9 Score=29.34 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +.. ....-|..+|.+|.-|-
T Consensus 38 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiH 67 (144)
T 2p57_A 38 KACFDCGAK-NPSWASITYGVFLCIDCSGVH 67 (144)
T ss_dssp GBCTTTCCB-SCCEEEGGGTEEECHHHHHHH
T ss_pred CcCCCCcCC-CCCeEEeccCEEEhhhchHHH
Confidence 458888873 332 33456888888887664
No 312
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.57 E-value=63 Score=20.77 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=33.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ |- ..-..+.+.+++..|+++.+-
T Consensus 15 glsq~~lA~~-~gis~~~i~~~e~------g~---------~~p~~~~l~~ia~~l~v~~~~ 60 (77)
T 2k9q_A 15 SLTAKSVAEE-MGISRQQLCNIEQ------SE---------TAPVVVKYIAFLRSKGVDLNA 60 (77)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------CC---------SCCHHHHHHHHHHHTTCCHHH
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CC---------CCCCHHHHHHHHHHhCcCHHH
Confidence 4789999995 8999998876522 11 112467888999999987653
No 313
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=37.53 E-value=11 Score=28.74 Aligned_cols=29 Identities=24% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +.. ....-|..+|.+|.-|-
T Consensus 37 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiH 66 (138)
T 2owa_A 37 RTCFDCESR-NPTWLSLSFAVFICLNCSSDH 66 (138)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHH
T ss_pred CcCCCCcCC-CCCeEEecCCEEEhHhhhHHH
Confidence 457888873 333 23456888888887664
No 314
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.36 E-value=56 Score=25.26 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.+..|||+. .|++..++.+.+++|.+.
T Consensus 40 ~~~s~~eLA~~-lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 40 GKAPLREISKI-TGLAESTIHERIRKLRES 68 (171)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 47899999995 999999999999999764
No 315
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.23 E-value=46 Score=23.88 Aligned_cols=28 Identities=0% Similarity=-0.051 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|.++.||++. .+++..++.+.++.|.+.
T Consensus 50 ~~t~~ela~~-l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQ-ACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHhHHHHHHHHHHHC
Confidence 7999999995 999999999999999875
No 316
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=37.18 E-value=27 Score=26.09 Aligned_cols=31 Identities=3% Similarity=0.011 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-|.++.||++. .+++..++.+.+++|.+.
T Consensus 48 ~~~~~t~~eLa~~-l~~~~~tvs~~v~~Le~~ 78 (147)
T 4b8x_A 48 KSGELPMSKIGER-LMVHPTSVTNTVDRLVRS 78 (147)
T ss_dssp GGGEEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHH-HCCCHHHHHHHHHHHHhC
Confidence 4557999999995 999999999999999874
No 317
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=37.15 E-value=1.3e+02 Score=22.72 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHH
Q 025357 104 RNLIQAFKSISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183 (254)
Q Consensus 104 r~l~~a~~~I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~ 183 (254)
..+......|.++... ++++.-.+.|+.-+..-.... -.++..++....... ..|.+..+.++.+....|+..+
T Consensus 99 ~~~~~i~~~l~~l~~~-~it~~el~~ak~~~~~~~~~~---~~~~~~~a~~l~~~~--~~g~~~~~~~~~~~i~~vT~~d 172 (197)
T 3ih6_A 99 KALQTLTATLESLSSK-PFSQEELERARSKWLTAWQQT---YADPEKVGVALSEAI--ASGDWRLFFLQRDRVREAKLDD 172 (197)
T ss_dssp HHHHHHHHHHHCTTTS-CCCHHHHHHHHHHHHHHHHHH---HTSHHHHHHHHHHHH--HTTCTTHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCHHH
Confidence 3444445555555442 789988999988776654321 123445544433332 2365666666655557899999
Q ss_pred HHHHHHHH
Q 025357 184 IGRAKEFI 191 (254)
Q Consensus 184 i~~~~k~l 191 (254)
|.++.+++
T Consensus 173 v~~~a~~~ 180 (197)
T 3ih6_A 173 VQRAAVAY 180 (197)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888765
No 318
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=36.92 E-value=10 Score=25.46 Aligned_cols=19 Identities=26% Similarity=0.901 Sum_probs=11.5
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG 30 (254)
..|.+|.. |+ .+..|.+||
T Consensus 12 ~AC~~C~~---~~-----~~~~CPnC~ 30 (69)
T 1ryq_A 12 KACRHCHY---IT-----SEDRCPVCG 30 (69)
T ss_dssp EEETTTCB---EE-----SSSSCTTTC
T ss_pred hhHHhCCc---cc-----cCCcCCCcc
Confidence 45777764 33 334677777
No 319
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=36.89 E-value=28 Score=24.86 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=31.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHH----HHHHHH---HhchhcccccccCCCCHHHHHHHHHhhc
Q 025357 167 RTVKEFCSVANGTTKKEIGRA----KEFIVK---HLEAEMGQSVEMGTIHASDYLVIFLLNI 221 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~----~k~l~~---~l~~~~~~~~~~~~~~p~~~i~r~~~~L 221 (254)
.+.+.+|+ +.||++.+|.|. +.++.. .+++. +++.+...+....++.|
T Consensus 24 ~gq~~vA~-~iGV~~StISR~k~~~~~~~~~lLa~l~l~------v~~~e~~~~~k~~~~~l 78 (97)
T 1xwr_A 24 LGTEKTAE-AVGVDKSQISRWKRDWIPKFSMLLAVLEWG------VVDDDMARLARQVAAIL 78 (97)
T ss_dssp HCHHHHHH-HHTCCTTTHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHH-HhCCCHHHHHHHHhhhHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHH
Confidence 56889999 589999999984 222333 34544 55555566666666666
No 320
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=36.83 E-value=65 Score=21.63 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=32.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |-. . + ..+.+.+++..|+++.+
T Consensus 21 gltq~~lA~~-~gis~~~is~~e~------g~~------~--~-~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 21 NVSLREFARA-MEIAPSTASRLLT------GKA------A--L-TPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHH------TSS------C--C-CHHHHHHHHHHTCSCHH
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHc------CCC------C--C-CHHHHHHHHHHHCcCHH
Confidence 3789999995 8999999987643 211 1 1 24678888998888776
No 321
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.66 E-value=37 Score=24.08 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|..+ +..++++. ++|+..+|+++++.|.+.
T Consensus 40 g~~lps~~eLa~~-lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 40 NEGLLVASKIADR-VGITRSVIVNALRKLESA 70 (102)
T ss_dssp TEEEECHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 3344 89999995 999999999999999875
No 322
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=36.57 E-value=13 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=20.1
Q ss_pred CCCCCCCCCCce-EEecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEV-VFDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~l-v~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +. -....-|..+|.+|.-|-
T Consensus 39 ~~CaDCga~-~P~WaS~nlGvfiC~~CSgiH 68 (147)
T 3dwd_A 39 NVCFECGAF-NPQWVSVTYGIWICLECSGRH 68 (147)
T ss_dssp TBCTTTCCB-SCCEEETTTTEEECHHHHHHH
T ss_pred CccCCCCCC-CCCeEEecccEeEhHhhChHH
Confidence 468888873 33 234567888888888765
No 323
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=42.73 E-value=7.4 Score=26.08 Aligned_cols=41 Identities=10% Similarity=0.284 Sum_probs=34.5
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 155 CLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 155 clY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
.|..+|++.|. |-|+..||.. ++=++..|...|++|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~-Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAK-LDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 47788998886 7899999885 78899999999999988765
No 324
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=36.31 E-value=56 Score=23.56 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. .+++..++.+.++.|.+.
T Consensus 46 ~~~~~~~la~~-l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVL-LGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCchhHHHHHHHHHHC
Confidence 37999999995 899999999999999875
No 325
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=36.22 E-value=63 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 61 ~~~~t~~ela~~-l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDR-TAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 347999999995 999999999999999875
No 326
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=36.00 E-value=69 Score=20.76 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
...|+.++|+. .|++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 23 ~glsq~~lA~~-~gis~~~i~~~e~------g~~------~---~~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 23 KGMTQEDLAYK-SNLDRTYISGIER------NSR------N---LTIKSLELIMKGLEVSDV 68 (82)
T ss_dssp TTCCHHHHHHH-HTCCHHHHHHHHT------TCC------C---CBHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHH-hCcCHHHHHHHHC------CCC------C---CCHHHHHHHHHHHCcCHH
Confidence 34799999995 8999998877622 211 1 135778888888888754
No 327
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.79 E-value=21 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=17.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
..|.+|++. .+..+|-.||.|.=.
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYCG 48 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEEC
T ss_pred CcCccccCC--------CCeeeeeecCccccC
Confidence 458999873 245789999999743
No 328
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=35.58 E-value=30 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.|+|+. .||+..+|.+..+ | . . + ..+.+.++|..|+++.+
T Consensus 37 glTq~eLA~~-~GiS~~tis~iE~------G-~------~--~-s~~~l~kIa~~L~v~~~ 80 (88)
T 3t76_A 37 DMKKGELREA-VGVSKSTFAKLGK------N-E------N--V-SLTVLLAICEYLNCDFG 80 (88)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------T-C------C--C-CHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------C-C------C--c-CHHHHHHHHHHHCcCHH
Confidence 4799999995 8999999987643 1 1 1 1 35788999999998754
No 329
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=35.43 E-value=46 Score=25.85 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+++..+..+-+.++.+|++. .+++..++.+.++.|.+.
T Consensus 47 L~~L~~~~~~~~t~~eLa~~-l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 47 ILSILHLPEEETTLNNIARK-MGTSKQNINRLVANLEKN 84 (189)
T ss_dssp HHHHHHSCGGGCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 33333333568999999995 999999999999999763
No 330
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=35.42 E-value=34 Score=28.56 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
..|.+|||+. +++++.+++...+.+.+.|+..
T Consensus 212 G~s~~eIA~~-l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 212 GKTNWEIATI-LNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHhCCC
Confidence 4789999995 9999999999999999999876
No 331
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=35.38 E-value=81 Score=22.01 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~-~v~~~~i~~~~k~l~~~ 194 (254)
.-|.++.||++. . +++..++.+..++|.+.
T Consensus 25 ~~~~~~~eLa~~-l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRL-MPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHH-CTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHH-hcCCCHHHHHHHHHHHHHC
Confidence 357999999995 8 99999999999998764
No 332
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=35.12 E-value=51 Score=24.92 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.+.+..|||+. .|++..++.+.+++|.+.
T Consensus 22 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSER-VALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 446899999995 999999999999999774
No 333
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=34.99 E-value=17 Score=25.03 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.7
Q ss_pred CceEEec--CCCceEcCcCceeec
Q 025357 13 TEVVFDH--SAGDTICSECGLVLE 34 (254)
Q Consensus 13 ~~lv~D~--~~G~~vC~~CG~Vl~ 34 (254)
..|..+- ..|...|.-||+...
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRYI 64 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEEE
T ss_pred CEEEEEccCCCCeEECCCCCCEEE
Confidence 4555554 689999999999863
No 334
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.93 E-value=61 Score=21.15 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
.+|+.++|+. .|++..+|.+..+ +.. ..-..+.+.++|..|+++.+
T Consensus 23 gltq~elA~~-~gis~~~is~~E~------G~~--------~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 23 GYSLSELAEK-AGVAKSYLSSIER------NLQ--------TNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TSC--------CCCBHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 4899999995 8999998877622 201 11235789999999998754
No 335
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=34.83 E-value=25 Score=30.19 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
....|++|||+. +|||..|+.++++
T Consensus 7 ~~~~Ti~diA~~-aGVS~~TVSrvLn 31 (366)
T 3h5t_A 7 QQYGTLASIAAK-LGISRTTVSNAYN 31 (366)
T ss_dssp CCTTHHHHHHHH-HTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHH-hCCCHHHHHHHHC
Confidence 345799999995 8999999999875
No 336
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=34.71 E-value=72 Score=21.69 Aligned_cols=50 Identities=4% Similarity=-0.083 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..++...+..+..- .. .| +.+.+.+++..|+++.+.
T Consensus 14 glsq~~lA~~-~gis~~~~~~~is~~E~g--~~------~p---~~~~l~~la~~l~v~~~~ 63 (98)
T 3lfp_A 14 GISQEKLGVL-AGIDEASASARMNQYEKG--KH------AP---DFEMANRLAKVLKIPVSY 63 (98)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHHHHHHT--SS------CC---CHHHHHHHHHHHTSCGGG
T ss_pred CCCHHHHHHH-hCCCcchhhhHHHHHHCC--CC------CC---CHHHHHHHHHHHCcCHHH
Confidence 4789999995 999999933333333221 11 11 356677888888776654
No 337
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=34.65 E-value=45 Score=23.28 Aligned_cols=29 Identities=3% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.+..||++. .+++..++.+.++.|.+.
T Consensus 33 ~~~~~~ela~~-l~is~~tv~~~l~~L~~~ 61 (114)
T 2oqg_A 33 ADQSASSLATR-LPVSRQAIAKHLNALQAC 61 (114)
T ss_dssp SCBCHHHHHHH-SSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 36899999995 999999999999999763
No 338
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=34.59 E-value=8.4 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..|.|..+||+. .|++..++.|..++|.+.
T Consensus 162 ~~~~t~~~lA~~-lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSRL-FGCARPALSRVFQELERE 191 (213)
T ss_dssp -------------------------------
T ss_pred cCCCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 457899999995 999999999999998764
No 339
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=34.55 E-value=1.1e+02 Score=21.81 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 149 ~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
..+-+|-+|+. ...|..|||+. +|++..++.+..++-.+.+.
T Consensus 22 ~~~~~A~lyYv-----~g~tQ~eIA~~-lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 22 QTIEIARGVLV-----DGKPQATFATS-LGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp HHHHHHHHHHT-----TCCCHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----cCCCHHHHHHH-HCCCHHHHHHHHHHHHHHHh
Confidence 44445555543 34789999995 99999999999998887763
No 340
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=34.19 E-value=51 Score=24.22 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 55 ~~~~t~~ela~~-l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 55 NDAMMITRLAKL-SLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 347999999995 999999999999999874
No 341
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.11 E-value=48 Score=25.00 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 59 ~~t~~eLa~~-l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATL-LGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999874
No 342
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.03 E-value=60 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-|.++.||++. .+++..++.+.++.|.+.
T Consensus 48 ~~~~~~~ela~~-l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANR-YFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-hCCCchhHHHHHHHHHHC
Confidence 557999999995 999999999999999875
No 343
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=34.01 E-value=48 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=25.0
Q ss_pred CCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+ +.+++++. +||+..+++++++.|...
T Consensus 35 ~~Lps~~~La~~-~~vSr~tvr~Al~~L~~~ 64 (125)
T 3neu_A 35 DKLPSVREMGVK-LAVNPNTVSRAYQELERA 64 (125)
T ss_dssp CBCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345 69999995 999999999999999874
No 344
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=33.96 E-value=19 Score=24.73 Aligned_cols=11 Identities=27% Similarity=0.936 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 025357 1 MADSYCADCKR 11 (254)
Q Consensus 1 ~~~~~Cp~Cg~ 11 (254)
|....||.||.
T Consensus 28 ~~k~FCp~CGn 38 (79)
T 2con_A 28 MNRVFCGHCGN 38 (79)
T ss_dssp SSCCSCSSSCC
T ss_pred cccccccccCc
Confidence 34466777776
No 345
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=33.81 E-value=57 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++.||++. .+++..++.+.++.|.+.
T Consensus 52 ~t~~eLa~~-l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARR-LNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 999999995 899999999999999764
No 346
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=33.65 E-value=60 Score=24.47 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+.+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|.
T Consensus 5 ~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 46 (185)
T 2yve_A 5 KKEMILRTAIDYIGE-YSLETLSYDSLAEA-TGLSKSGLIYHFP 46 (185)
T ss_dssp HHHHHHHHHHHHHHH-SCSTTCCHHHHHHH-HCCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHH-cChhhccHHHHHHH-hCCChHHHHHhCc
Confidence 345566665555444 554 6999999995 8999999887753
No 347
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=33.64 E-value=34 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+..|||+. +|++..+|.+.++
T Consensus 32 ~s~~eIA~~-lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANA-LGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHT
T ss_pred CCHHHHHHH-HCcCHHHHHHHHH
Confidence 589999995 9999999988653
No 348
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.59 E-value=72 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+|||+. +|+++.+++....+..+.|+..
T Consensus 213 ~s~~EIA~~-L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 213 LSSKEIAAT-LYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHHHHcCC
Confidence 789999995 9999999999999999998764
No 349
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=33.56 E-value=11 Score=25.37 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=10.3
Q ss_pred eEcCcCceeecc
Q 025357 24 TICSECGLVLEA 35 (254)
Q Consensus 24 ~vC~~CG~Vl~e 35 (254)
+.|..||.|+.+
T Consensus 5 VRCFTCGkvi~~ 16 (70)
T 1twf_J 5 VRCFSCGKVVGD 16 (70)
T ss_dssp SBCTTTCCBCTT
T ss_pred eecCCCCCChHH
Confidence 579999999973
No 350
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.55 E-value=39 Score=24.80 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=25.1
Q ss_pred CCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+ +.+++++. +||+..+++++++.|...
T Consensus 33 ~~lPse~~La~~-~~vSr~tvr~Al~~L~~~ 62 (126)
T 3by6_A 33 DQLPSVRETALQ-EKINPNTVAKAYKELEAQ 62 (126)
T ss_dssp CEECCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345 89999995 999999999999999864
No 351
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=33.53 E-value=75 Score=21.99 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. ....+.+.++|..|+++.+
T Consensus 41 gltq~elA~~-~gis~~~is~iE~------G~~---------~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 41 GMTQEDLAYK-SNLDRTYISGIER------NSR---------NLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TCS---------CCBHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHC------CCC---------CCCHHHHHHHHHHHCcCHH
Confidence 4789999994 8999988877622 211 1135778888888887754
No 352
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.43 E-value=13 Score=28.56 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +.. ....-|..+|.+|.-|-
T Consensus 30 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiH 59 (141)
T 2crr_A 30 KYCADCEAK-GPRWASWNIGVFICIRCAGIH 59 (141)
T ss_dssp SSCSSSCCS-SCCSEETTTTEECCHHHHHHH
T ss_pred CcCCCCCCC-CCCeEEeccCeEEhhhhhHhH
Confidence 468888873 322 33457888888887664
No 353
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=33.39 E-value=46 Score=24.81 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.+++|.+.
T Consensus 67 ~~t~~eLa~~-l~~~~~~vs~~l~~Le~~ 94 (161)
T 3e6m_A 67 ELTVGQLATL-GVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp EEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 8999999995 999999999999999874
No 354
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=33.38 E-value=77 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+-++|+.. .+++..++....+.+.+.|+..
T Consensus 158 ~s~~~Ia~~-l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 158 LMNKQIAGE-LGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHHTTCS
T ss_pred CcHHHHHHH-cCCCHHHHHHHHHHHHHHhCCC
Confidence 688999995 8999999999999999999864
No 355
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=33.24 E-value=58 Score=20.73 Aligned_cols=47 Identities=6% Similarity=-0.048 Sum_probs=33.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
..|+.++|+. .|++..+|.+..+ | . .. ..+.+.+.++|..|+++.+-
T Consensus 20 g~sq~~lA~~-~gis~~~i~~~e~------g-~------~~-~~~~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 20 NLTINRVATL-AGLNQSTVNAMFE------G-R------SK-RPTITTIRKVCGTLGISVHD 66 (78)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHC------T-T------CC-CCCHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------C-C------CC-CCCHHHHHHHHHHcCCCHHH
Confidence 4789999995 8999998877632 1 1 10 12357788999999987653
No 356
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=33.20 E-value=79 Score=20.76 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFL 228 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~ 228 (254)
...|+.|+|+. .|++..+|.+..+ |- .... ..+.+.+++..|+++.+..
T Consensus 30 ~glsq~elA~~-~gis~~~is~~e~------g~-------~~~~-~~~~l~~la~~l~~~~~~l 78 (83)
T 2a6c_A 30 SGLTQFKAAEL-LGVTQPRVSDLMR------GK-------IDLF-SLESLIDMITSIGLKVEIN 78 (83)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------TC-------GGGC-CHHHHHHHHHHTTCCCCCC
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CC-------CCCC-CHHHHHHHHHHcCCCeEEE
Confidence 45899999995 8999999887633 11 1001 2577889999999987753
No 357
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=33.08 E-value=18 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.830 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
..|..||+ .+ +- --...|..||+
T Consensus 17 tlCrRCG~-~s--yH--~qK~~Ca~CGy 39 (94)
T 4a18_A 17 TLCRRCGK-AT--YH--KQKLRCAACGY 39 (94)
T ss_dssp EECTTTCS-EE--EE--TTTTEESSSCG
T ss_pred ceecCcCc-hh--hh--hccccccccCC
Confidence 35999998 32 22 34469999999
No 358
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=33.02 E-value=26 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
-.|+.|+|+. ++|++.+|.|-.++
T Consensus 39 ~~si~elA~~-~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISAL-ANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHHH
T ss_pred hcCHHHHHHH-HCCCHHHHHHHHHH
Confidence 4899999995 99999999877543
No 359
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=32.98 E-value=58 Score=25.13 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhc-----c-c-------c--cccCCCC-----HHHHHHHHHhhcCC
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEM-----G-Q-------S--VEMGTIH-----ASDYLVIFLLNIFK 223 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~-----~-~-------~--~~~~~~~-----p~~~i~r~~~~L~l 223 (254)
+-+.+..|||+. .|++..++.+.+++|.+.=-+.. + . . +.+++ . +...+..|...|.-
T Consensus 29 ~~~~s~~eLA~~-lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~-~~~~~f~~~~~~~~~~~l~~ 106 (171)
T 2ia0_A 29 DARLTISELSEQ-LKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK-PVIEDFLERYISYISSTLSA 106 (171)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC-C--CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC-ccccccchhHHHHHHHHHHC
Confidence 347899999995 99999999999999976422210 0 0 0 01111 2 33467778877766
Q ss_pred Ccchhhee
Q 025357 224 NFFFLFVL 231 (254)
Q Consensus 224 ~~~v~~v~ 231 (254)
-++|..+.
T Consensus 107 ~peV~~~~ 114 (171)
T 2ia0_A 107 LPGVLFVA 114 (171)
T ss_dssp STTEEEEE
T ss_pred CCCeEEEE
Confidence 66666654
No 360
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.92 E-value=39 Score=25.46 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 156 LYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 156 lY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
|++.....+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 52 L~~l~~~~~~~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADR-LISRAPDITRLIDRLDDR 89 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHH-C---CTHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCcCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 33333333568999999995 999999999999999874
No 361
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=32.82 E-value=60 Score=24.10 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-+.+..|||+. .|++..++.+.+++|.+.
T Consensus 19 ~~~~s~~ela~~-lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATR-AGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 347999999995 999999999999999774
No 362
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=32.66 E-value=47 Score=25.39 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
..+.+|||.. .|+++.++.+.+.+..+.|.
T Consensus 156 g~s~~EIA~~-lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 156 GLSYEEIAAI-MDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp CCCHHHHHHH-TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 4789999995 99999998877766666554
No 363
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=32.65 E-value=47 Score=24.82 Aligned_cols=28 Identities=0% Similarity=-0.045 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 60 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 60 NLSNAKLAER-SFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TCCHHHHHHH-HTSCGGGHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 899999999999999774
No 364
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=32.54 E-value=1.1e+02 Score=20.28 Aligned_cols=48 Identities=13% Similarity=-0.030 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcch
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFF 227 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v 227 (254)
....|+.|+|+. .|++..+|.+..+ +.. . -..+.+.+++..|+++.+.
T Consensus 24 ~~glsq~~lA~~-~gis~~~is~~e~------g~~------~---p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 24 SKGLTQKDLATK-INEKPQVIADYES------GRA------I---PNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp TTTCCHHHHHHH-HTSCHHHHHHHHH------TCS------C---CCHHHHHHHHHHHTBCCSS
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHHH
Confidence 345899999995 8999998877633 211 1 1357788999999887665
No 365
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=32.53 E-value=18 Score=27.12 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=13.8
Q ss_pred CCCCC-CCCCCceEEe--cCCCceEcCcCceeec
Q 025357 4 SYCAD-CKRLTEVVFD--HSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~-Cg~~~~lv~D--~~~G~~vC~~CG~Vl~ 34 (254)
-+|+. ||. |+.- ...|.++| ||.-++
T Consensus 8 YkC~~~CGn---ivev~~~g~~~l~C--CG~~m~ 36 (128)
T 1y07_A 8 FLQKESAGF---FLGMDAPAGSSVAC--GSEVLR 36 (128)
T ss_dssp ECC-----C---EEEESCCTTCEEEE--TTEEEE
T ss_pred EECCCCCCC---EEEEEcCCCcceee--cCcccc
Confidence 36999 986 3332 46667777 887764
No 366
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.52 E-value=15 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.536 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCc--Cceee
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSE--CGLVL 33 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~--CG~Vl 33 (254)
...||.|+. .|..+..-..+.|.. ||.-.
T Consensus 6 ~k~CP~C~~--~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 6 TKECPKCHV--TIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCTTTCC--CCSSCCSCCSSSCCSSGGGSCC
T ss_pred ceECcCCCC--eeEeCCCCCcEEECCCCcCCEE
Confidence 468999997 355566666778887 87654
No 367
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=32.49 E-value=70 Score=22.80 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.+..+|++. .+++..++.+.++.|.+.
T Consensus 47 ~~~~~~~la~~-l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKV-LSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCChHHHHHHHHHHHHC
Confidence 36899999995 999999999999999875
No 368
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=32.31 E-value=84 Score=23.39 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=27.2
Q ss_pred hcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 162 ~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+-+.+..|||+. .+++..++.+.++.|.+.
T Consensus 42 ~~~~~~~~~eLa~~-l~~~~~tvs~~v~~Le~~ 73 (151)
T 4aik_A 42 RLPPEQSQIQLAKA-IGIEQPSLVRTLDQLEEK 73 (151)
T ss_dssp HSCTTSCHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCcHHHHHHH-HCcCHHHHHHHHHHHHhC
Confidence 34556889999995 999999999999999874
No 369
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=32.30 E-value=85 Score=20.78 Aligned_cols=45 Identities=4% Similarity=-0.058 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. . .+.+.+.+++..|+++.+
T Consensus 30 glsq~~lA~~-~gis~~~is~~e~------g~~------~---~~~~~l~~ia~~l~v~~~ 74 (92)
T 1lmb_3 30 GLSQESVADK-MGMGQSGVGALFN------GIN------A---LNAYNAALLAKILKVSVE 74 (92)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHT------TSS------C---CCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCCCHH
Confidence 4789999995 8999998877632 211 1 124678889999988654
No 370
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=32.22 E-value=53 Score=22.60 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.+..||++. .|++..++.+..+.|.+.
T Consensus 35 ~~~~~~ela~~-l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQ-IGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHH-HTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 47999999995 899999999999999653
No 371
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=32.21 E-value=44 Score=25.07 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
..+.+|||+. .|+++.+++..+.+-++.|.
T Consensus 109 g~s~~EIA~~-lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 109 GFSPEDAAYL-IEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp CCCHHHHHHT-TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHHHHHHHHH
Confidence 4789999995 99999888876665555554
No 372
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.85 E-value=95 Score=21.46 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+..++.+||+.. ++++..++.++++.|.+.
T Consensus 34 ~~gi~qkeLa~~-~~l~~~tvt~iLk~LE~k 63 (91)
T 2dk5_A 34 NKGIWSRDVRYK-SNLPLTEINKILKNLESK 63 (91)
T ss_dssp TTCEEHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 346999999995 999999999999998653
No 373
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.75 E-value=37 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|..|+.. +..-.-.--|..||.|+=
T Consensus 15 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC 41 (84)
T 1x4u_A 15 GNCTGCSAT----FSVLKKRRSCSNCGNSFC 41 (84)
T ss_dssp SSCSSSCCC----CCSSSCCEECSSSCCEEC
T ss_pred CcCcCcCCc----cccchhhhhhcCCCcEEC
Confidence 579999873 344455566777777764
No 374
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.68 E-value=48 Score=24.28 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 51 ~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 51 SLKVSEIAER-MEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp EEEHHHHHHH-HTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 899999999999999875
No 375
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=31.53 E-value=62 Score=24.88 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=29.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCc
Q 025357 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNF 225 (254)
Q Consensus 168 tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~ 225 (254)
|+.|+|+. .|++..+|.+..+ +.. .|.+.+.+++..|+++.
T Consensus 22 tq~elA~~-~Gis~~~i~~~e~------g~~----------~p~~~l~~ia~~~~v~~ 62 (189)
T 2fjr_A 22 QKIQLANH-FDIASSSLSNRYT------RGA----------ISYDFAAHCALETGANL 62 (189)
T ss_dssp SHHHHHHH-TTCCHHHHHHHHH------SSS----------CCHHHHHHHHHHHCCCH
T ss_pred CHHHHHHH-hCcCHHHHHHHHh------CCC----------CCHHHHHHHHHHHCCCH
Confidence 99999994 9999999887644 211 12567777888777754
No 376
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=31.37 E-value=32 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.3
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
.|+.|||.. +||+..+|++.+..
T Consensus 21 ~ti~dlA~~-~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKE-FGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHH-HTSCHHHHHHHHTT
T ss_pred CCHHHHHHH-HCCCHHHHHHHHcC
Confidence 799999995 89999999998754
No 377
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=31.34 E-value=90 Score=24.38 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCC
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFK 223 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l 223 (254)
..+.++|++. .+++.+++....+.|.+.|+.. +-.+.+......++.
T Consensus 174 g~s~~~Ia~~-l~~s~~Tv~~~i~~l~~KL~~~----------~~~~l~~~a~~~~~~ 220 (225)
T 3klo_A 174 GASNIEIADK-LFVSENTVKTHLHNVFKKINAK----------NRLQALIWAKNNIGI 220 (225)
T ss_dssp TCCHHHHHHH-TTCCHHHHHHHHHHHTTTSCCS----------SHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHH-hCCCHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHhccc
Confidence 3789999995 8999999999999999999875 334555555554443
No 378
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=31.26 E-value=70 Score=23.36 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.++.||++. .+++..++.+.++.|.+.
T Consensus 60 ~~~t~~ela~~-l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 60 DERSVSEIGER-LYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp CSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-hCCCcccHHHHHHHHHHC
Confidence 47999999995 899999999999999875
No 379
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.20 E-value=13 Score=28.73 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceE-EecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVV-FDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv-~D~~~G~~vC~~CG~Vl 33 (254)
..|-+||.. +.. ....-|..+|.+|--|-
T Consensus 30 ~~CaDCga~-~P~WaS~n~GvfiC~~CsgiH 59 (149)
T 2crw_A 30 KVCFDCGAK-NPSWASITYGVFLCIDCSGSH 59 (149)
T ss_dssp SBCSSSCCB-SCCCEETTTTEECCHHHHHHH
T ss_pred CcCCCCcCC-CCCcEEeccCEEEchhcchhh
Confidence 457777763 322 23456777777776664
No 380
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=31.18 E-value=54 Score=22.85 Aligned_cols=28 Identities=4% Similarity=0.108 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~ 193 (254)
-|.++.||++. .+++..++.+.++.|.+
T Consensus 38 ~~~~~~ela~~-l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQ-LNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 46899999995 89999999999999984
No 381
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=31.13 E-value=70 Score=23.70 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHhcC-CCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQEN-KPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~-~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+.+..|++=+..+ .| ...|+++|++. +||++.+|-+.|.
T Consensus 10 ~r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~-agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 10 KKQAILETALQLFVS-QGFHGTSTATIARE-AGVATGTLFHHFP 51 (195)
T ss_dssp HHHHHHHHHHHHHHH-TCSTTSCHHHHHHH-HTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHh-cCcccCCHHHHHHH-hCCChhHHHHHcC
Confidence 445666666665555 56 46999999995 8999999887653
No 382
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=31.11 E-value=94 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 45 ~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEK-WSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 5999999995 899999999999999774
No 383
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.10 E-value=31 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
..|..|+.. +..-.-.--|..||.|+=.
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLCG 49 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEECT
T ss_pred CCCcCcCCc----cccchhcccccCCCcEECh
Confidence 468899873 4445666788888888743
No 384
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=31.08 E-value=60 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHhcCCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 025357 159 ACRQENKPRTVKEFCSVAN--GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 159 AcR~~~~p~tl~eIa~~~~--~v~~~~i~~~~k~l~~~ 194 (254)
..+.++ |.|..+|+. .. +++...+++.+++|.+.
T Consensus 21 ~L~~~g-~~s~~eLA~-~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 21 IIHEEG-NGSPKELED-RDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHHHHS-CBCHHHHHT-STTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHH-HHhcCCCHHHHHHHHHHHHHC
Confidence 344445 899999999 48 99999999999999875
No 385
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=31.03 E-value=43 Score=26.91 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+.+.+..|||+. ++++..++.+++++|.+.
T Consensus 17 ~~~~~~~~~lA~~-l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 17 RHNKITNKEIAQL-MQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp SCSCCCHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 4668999999995 999999999999999874
No 386
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.81 E-value=57 Score=24.03 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=25.0
Q ss_pred CCC-CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPR-TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~-tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..+ +.+++++. +||+..+++++++.|...
T Consensus 26 ~~LPse~~La~~-~gvSr~tVr~Al~~L~~~ 55 (129)
T 2ek5_A 26 QRVPSTNELAAF-HRINPATARNGLTLLVEA 55 (129)
T ss_dssp SCBCCHHHHHHH-TTCCHHHHHHHHHHHHTT
T ss_pred CcCcCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345 89999995 999999999999999764
No 387
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=30.80 E-value=21 Score=27.34 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~fPP---r~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEECCCCc---EEeCC---CCCCCCCCCC
Confidence 57999997 33332 2489999865
No 388
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.76 E-value=1.3e+02 Score=20.65 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHHHhc-CCC--CCHHHHHHHhcCC-CHHHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAAC-LYIACRQE-NKP--RTVKEFCSVANGT-TKKEIGRA 187 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAc-lY~AcR~~-~~p--~tl~eIa~~~~~v-~~~~i~~~ 187 (254)
+..+|..++++.....+ +|++.. |.++..+.--. +-.|+++- ..+ .++.|||.. .|. +...+.+.
T Consensus 21 ~~~lA~~~~~s~~~l~r---~fk~~~------G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~-~Gf~~~s~F~r~ 90 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFK---AFQRSR------GYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALS-CGFSNLGHFARD 90 (108)
T ss_dssp HHHHHHHHTCCHHHHHH---HHHHHT------SSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHH-TTCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH---HHHHHh------CcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH-hCCCCHHHHHHH
Confidence 67788888888754443 566543 34443322221 22233322 222 699999994 777 57788777
Q ss_pred HHH
Q 025357 188 KEF 190 (254)
Q Consensus 188 ~k~ 190 (254)
|++
T Consensus 91 Fk~ 93 (108)
T 3mn2_A 91 YRD 93 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 389
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=30.75 E-value=1.2e+02 Score=21.27 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=26.6
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-+.++.++++. .+++..++.+.+..|.+.
T Consensus 33 ~g~~~s~~eLa~~-l~l~~stLsR~l~rLe~~ 63 (96)
T 2obp_A 33 GATPWSLPKIAKR-AQLPMSVLRRVLTQLQAA 63 (96)
T ss_dssp TCCCCBHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHH-hCCchhhHHHHHHHHHHC
Confidence 3457899999995 899999999999998763
No 390
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=30.74 E-value=78 Score=23.51 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcC-CCCCHHHHHHHhcCCCHHHHHHHH
Q 025357 150 AIVAACLYIACRQEN-KPRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 150 ~iaAAclY~AcR~~~-~p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
.+..|++=+..+ .| ...|+++|++. +||+..+|-+.|
T Consensus 6 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 43 (194)
T 3bqz_B 6 KILGVAKELFIK-NGYNATTTGEIVKL-SESSKGNLYYHF 43 (194)
T ss_dssp HHHHHHHHHHHH-HTTTTCCHHHHHHH-TTCCHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCccCCHHHHHHH-hCCCchhHHHhC
Confidence 344444444444 45 46999999995 999999988765
No 391
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=30.73 E-value=1e+02 Score=23.25 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+.+..|++=+..+ .|. ..|+++|++. +||+..+|-+.|.
T Consensus 17 ~r~~Il~aa~~lf~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 17 ARDLLLQTASNIMRE-GDVVDISLSELSLR-SGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHHHHHHH-HTSSCCCHHHHHHH-HCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH-cCcccccHHHHHHH-hCCChhhHhHhcC
Confidence 445566666655555 454 6999999995 8999999987764
No 392
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.69 E-value=28 Score=24.20 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=20.4
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCc
Confidence 469999873 34445667889999888543
No 393
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=30.40 E-value=74 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
..++++.|||+. ++||+.+|+|-.+++.+.
T Consensus 19 ~~~~~~~ela~~-l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 19 EQDMTQAQIARE-LGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp TSCCCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 345999999995 999999999999988764
No 394
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.16 E-value=33 Score=23.82 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeec
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~ 34 (254)
..|..|+.. +..-.-.--|..||.|+=
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC 36 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEEE
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEEC
Confidence 579999873 344455566777776663
No 395
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=30.12 E-value=77 Score=22.81 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. .+++..++.+.++.|.+.
T Consensus 50 ~~~t~~eLa~~-l~~~~~~vs~~l~~L~~~ 78 (143)
T 3oop_A 50 EPISQKEIALW-TKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp SSEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCCHhhHHHHHHHHHHC
Confidence 57999999995 899999999999999874
No 396
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=30.10 E-value=23 Score=20.66 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=18.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+..+||.. +|++..+|.+.++
T Consensus 22 ~s~~~ia~~-lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAII-FGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHT-TSCCHHHHHHHSC
T ss_pred CCHHHHHHH-HCCCHHHHHHHHH
Confidence 789999994 9999999987654
No 397
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=30.10 E-value=18 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=13.6
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG 30 (254)
..||.|++...++. -.|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 46999987444442 4577774
No 398
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=30.02 E-value=30 Score=26.58 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=19.7
Q ss_pred EEecCCC----ceEcCcCceeecccccccCcc
Q 025357 16 VFDHSAG----DTICSECGLVLEAYSVDETSE 43 (254)
Q Consensus 16 v~D~~~G----~~vC~~CG~Vl~e~~id~~~e 43 (254)
..|.+-| ++.|..||-=|. +++++||+
T Consensus 79 ~~D~s~gm~RtEV~C~~Cg~HLG-HVF~DGP~ 109 (144)
T 3e0o_A 79 KLDTSHGMIRTEVRSRTADSHLG-HVFNDGPG 109 (144)
T ss_dssp EEECCTTSCEEEEEETTTCCEEE-EEESCCSS
T ss_pred eecCCCCceEEEEEcCCCCCccC-CccCCCCC
Confidence 3565555 799999999986 77766653
No 399
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=30.02 E-value=20 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=15.9
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~V 32 (254)
++|+.||. +.+=+ ..+|..||.-
T Consensus 48 ~rC~~CG~---~~~PP---r~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFVPA---RSYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESC---CSEETTTTEE
T ss_pred EEeCCCCc---EEcCc---hhhCcCCCCC
Confidence 57999997 33433 3579999864
No 400
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.97 E-value=28 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
..|..|+.. |..-.-.--|..||.|+=..
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~~ 98 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCAE 98 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEEChH
Confidence 469999873 44455667888888887433
No 401
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.93 E-value=98 Score=21.83 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+.-+ |.. .| +.+.+.++|..|+++.+
T Consensus 36 gltq~elA~~-~gis~~~is~~E~------G~~------~p---s~~~l~~ia~~l~v~~~ 80 (111)
T 3mlf_A 36 GLTQKELGDL-FKVSSRTIQNMEK------DST------NI---KDSLLSKYMSAFNVKYD 80 (111)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHH------CCT------TC---CHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHC------CCC------CC---CHHHHHHHHHHhCcCHH
Confidence 4789999994 8999998877632 211 11 25778888888888765
No 402
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=29.92 E-value=6 Score=21.10 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=10.3
Q ss_pred CcceeeehhhcccccCC
Q 025357 233 FSSCMIFCSLWPYLSNP 249 (254)
Q Consensus 233 ~~~~~~~~~~~~~~~~~ 249 (254)
+..|+|||.|=+-.-|+
T Consensus 8 DkEC~YfChlDiIWvnt 24 (26)
T 1srb_A 8 DKECLYFCHQDVIWXXX 24 (26)
T ss_dssp SHHHHHHHSCCCCC---
T ss_pred ccceEEEEeccEEEeec
Confidence 45599999965555554
No 403
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=29.73 E-value=1e+02 Score=23.03 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 149 EAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 149 ~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+..|++=+-. ..|. ..|+.||++. +||++.+|-+.|+
T Consensus 6 ~~Il~aA~~lf~-~~G~~~~s~~~IA~~-agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 6 DRILEEAAKLFT-EKGYEATSVQDLAQA-LGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHHHHHH-HHCSTTCCHHHHHHH-HTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHH-hCCCHHHHHHHcC
Confidence 334444444333 3554 5899999995 8999999987763
No 404
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.70 E-value=32 Score=28.94 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.|++|||+. +|||..|+.++++
T Consensus 3 ~ti~dvA~~-agVS~~TVSrvln 24 (332)
T 2hsg_A 3 VTIYDVARE-ASVSMATVSRVVN 24 (332)
T ss_dssp CCHHHHHHH-TTSCHHHHHHHHT
T ss_pred CCHHHHHHH-hCCCHHHHHHHHc
Confidence 589999995 9999999999865
No 405
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=29.67 E-value=76 Score=23.14 Aligned_cols=29 Identities=7% Similarity=-0.060 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. .+++..++.+.++.|.+.
T Consensus 54 ~~~t~~eLa~~-l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKR-LIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 47999999995 899999999999999874
No 406
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=29.62 E-value=18 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=18.3
Q ss_pred CCCCCCCCCCceEE-ecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVF-DHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~-D~~~G~~vC~~CG~Vl 33 (254)
..|-+||+. +..| ...-|..+|.+|.-|-
T Consensus 23 ~~CaDCga~-~P~WaS~nlGvflCi~CSGiH 52 (163)
T 3sub_A 23 NKCFDCGIS-NPDWVSVNHGIFLCINCSGVH 52 (163)
T ss_dssp GBCTTTCCB-SCCEEETTTTEEECHHHHHHH
T ss_pred CccccCCCC-CCCeEEecCCeeEHHhhhHHh
Confidence 457788873 3322 3456888888887664
No 407
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=29.61 E-value=1.2e+02 Score=21.31 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchh
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFL 228 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~ 228 (254)
...|+.|+|+. .|++..+|.+.-+ | ...|. .+.+++..|++...+.
T Consensus 48 ~glTQ~eLA~~-~gvs~~~is~~E~------G----------~~~~~-~l~~i~~aL~~~~~ld 93 (101)
T 4ghj_A 48 RDLTQSEVAEI-AGIARKTVLNAEK------G----------KVQLD-IMIAILMALDLTEQID 93 (101)
T ss_dssp TTCCHHHHHHH-HTSCHHHHHHHHT------T----------CCBHH-HHHHHHHHTTCCGGGG
T ss_pred cCCCHHHHHHH-cCCCHHHHHHHHC------C----------CCCHH-HHHHHHHHcCCCccHH
Confidence 45899999995 8999999987621 2 12353 5778999999977653
No 408
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=29.56 E-value=1e+02 Score=25.04 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=27.6
Q ss_pred hcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 162 QENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 162 ~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++.+.++.||++. +++++.++.+..+.|.+.
T Consensus 19 ~~~~~~~~~ela~~-~gl~~stv~r~l~~L~~~ 50 (249)
T 1mkm_A 19 KNPGDVSVSEIAEK-FNMSVSNAYKYMVVLEEK 50 (249)
T ss_dssp HCSSCBCHHHHHHH-TTCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHH-HCcCHHHHHHHHHHHHHC
Confidence 45568999999994 999999999999998763
No 409
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=29.54 E-value=67 Score=24.33 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+.+.+..|++=+..+ .|. ..|+++||+. +||+..+|-+.|
T Consensus 13 tr~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 53 (189)
T 3vp5_A 13 KRNRVYDACLNEFQT-HSFHEAKIMHIVKA-LDIPRGSFYQYF 53 (189)
T ss_dssp HHHHHHHHHHHHHHH-SCTTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-CCcccccHHHHHHH-hCCChHHHHHHC
Confidence 455666666665544 565 6999999995 899999887664
No 410
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=29.51 E-value=64 Score=26.58 Aligned_cols=74 Identities=8% Similarity=0.106 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHH--------HHhchhc--------ccc-----cccCCCC
Q 025357 151 IVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIV--------KHLEAEM--------GQS-----VEMGTIH 209 (254)
Q Consensus 151 iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~--------~~l~~~~--------~~~-----~~~~~~~ 209 (254)
+..+.-|+--.. ..+.++.++|+. ++++...+.+.+++.. ..+.+.. +.+ ....-.+
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~-~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~ 82 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAK-AGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDS 82 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTT-TSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHH-HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCCCC
Confidence 344455554333 568999999994 8999999998877541 1111110 001 1134467
Q ss_pred HHHHHHHHHhhcCCCcc
Q 025357 210 ASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 210 p~~~i~r~~~~L~l~~~ 226 (254)
+..|-.-|-...|+++.
T Consensus 83 ~~~f~r~fk~~~g~~P~ 99 (292)
T 1d5y_A 83 QQTFTRAFKKQFAQTPA 99 (292)
T ss_dssp HHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHCcChH
Confidence 78888888888887654
No 411
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.44 E-value=14 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.721 Sum_probs=11.7
Q ss_pred CCceEcCcCceeeccc
Q 025357 21 AGDTICSECGLVLEAY 36 (254)
Q Consensus 21 ~G~~vC~~CG~Vl~e~ 36 (254)
.....|..||..+...
T Consensus 7 ~~~~~C~~C~~~i~~~ 22 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPVW 22 (39)
T ss_dssp CCEEECTTTCCEEEGG
T ss_pred CCCcccccccCcCCcc
Confidence 3456899999988643
No 412
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=29.32 E-value=1.1e+02 Score=22.08 Aligned_cols=62 Identities=11% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchh
Q 025357 122 LVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 122 Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~ 198 (254)
++....+....+++.+.+ .....+.. +++ .-+.++.||++. .+++..++.+.++.|.+ .|+-
T Consensus 28 ~~~~~~~~~~~~~kaL~~------~~rl~IL~---~L~----~~~~s~~ela~~-lgis~stvs~~L~~Le~-~Glv 89 (122)
T 1r1t_A 28 IAPEVAQSLAEFFAVLAD------PNRLRLLS---LLA----RSELCVGDLAQA-IGVSESAVSHQLRSLRN-LRLV 89 (122)
T ss_dssp CCHHHHHHHHHHHHHHCC------HHHHHHHH---HHT----TCCBCHHHHHHH-HTCCHHHHHHHHHHHHH-TTSE
T ss_pred CCHhHHHHHHHHHHHhCC------HHHHHHHH---HHH----cCCCCHHHHHHH-HCcCHHHHHHHHHHHHH-CCCe
Confidence 345566677777776632 11111111 111 247899999995 89999999999999988 5543
No 413
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=29.31 E-value=2e+02 Score=24.96 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHH----------HHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHH
Q 025357 103 DRNLIQAFKSIS----------AMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172 (254)
Q Consensus 103 ~r~l~~a~~~I~----------~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eI 172 (254)
+..+.++.++|. .+|+.++++.....+ +|++........=.+..-+.-|.-++. ....++.||
T Consensus 304 d~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r---~f~~~~g~s~~~~~~~~r~~~a~~~L~----~~~~~i~~i 376 (412)
T 4fe7_A 304 DPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEK---RFKEEVGETIHAMIHAEKLEKARSLLI----STTLSINEI 376 (412)
T ss_dssp CHHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHH
T ss_pred cHHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHH---HHHHHHCcCHHHHHHHHHHHHHHHHHh----cCCCCHHHH
Confidence 455566666554 456777777644433 566544322110011112223333332 235789999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHH
Q 025357 173 CSVANGT-TKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFL 218 (254)
Q Consensus 173 a~~~~~v-~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~ 218 (254)
|.. +|. +...+.+.||+ ..| .+|.+|-.++-
T Consensus 377 a~~-~Gf~~~~~f~~~Fk~---~~g-----------~tP~~~r~~~~ 408 (412)
T 4fe7_A 377 SQM-CGYPSLQYFYSVFKK---AYD-----------TTPKEYRDVNS 408 (412)
T ss_dssp HHH-TTCSCHHHHHHHHHH---HSS-----------SCHHHHHHHHC
T ss_pred HHH-cCCCCHHHHHHHHHH---HHC-----------cCHHHHHHhch
Confidence 995 787 67888887776 334 35788876653
No 414
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.20 E-value=61 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.8
Q ss_pred CCCHHHHHHHhcCCCHH-HHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKK-EIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~-~i~~~~k~l~~~ 194 (254)
|.|..+||+ .+|++.. .+++.+..|.+.
T Consensus 25 ~~ta~eiA~-~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 25 DSSALNLAK-NIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp CEEHHHHHH-HHCGGGHHHHHHHHHHHHHT
T ss_pred CcCHHHHHH-HcCCCcHHHHHHHHHHHHHC
Confidence 789999999 4999998 999999888764
No 415
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.07 E-value=96 Score=20.22 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=31.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 168 tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
++.++|.. .|++..+|.+..+ |. .+. ...+.+.++|..|+++.+
T Consensus 29 sq~~lA~~-~gis~~~is~~E~------g~-------~~~-p~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 29 SMVTVAFD-AGISVETLRKIET------GR-------IAT-PAFFTIAAVARVLDLSLD 72 (86)
T ss_dssp CHHHHHHH-HTCCHHHHHHHHT------TC-------CSS-CBHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHH-hCCCHHHHHHHHc------CC-------CCC-CCHHHHHHHHHHhCCCHH
Confidence 89999995 8999998877632 11 101 125778899999998754
No 416
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=28.97 E-value=1.3e+02 Score=20.34 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHH
Q 025357 120 LGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEF 172 (254)
Q Consensus 120 L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eI 172 (254)
.++++.+.++|..+++.+ |-++...+=..+-.+.+..++|..+.-.
T Consensus 6 ~RiD~~lK~~a~~v~~~l-------Gl~~s~Ai~~fl~~v~~~~~iPF~~~~~ 51 (79)
T 4fxe_A 6 LRIDDELKARSYAALEKM-------GVTPSEALRLMLEYIADNERLPFKQTLL 51 (79)
T ss_dssp EECCHHHHHHHHHHHHHH-------TCCHHHHHHHHHHHHHHHSSCSSCCHHH
T ss_pred EEcCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHhCCCCCcccCC
Confidence 456777888888888775 5566666666666677888888776543
No 417
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=28.86 E-value=1.2e+02 Score=20.65 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhchh
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGT-TKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v-~~~~i~~~~k~l~~~l~~~ 198 (254)
.....|.-||-+.-.. -+.++++|.+ .+++ +..++..++-.|.++=++.
T Consensus 7 ~IG~nAG~VW~~L~~~-~~~s~~el~k-~t~l~~d~el~lAiGWLaREdKI~ 56 (77)
T 2l01_A 7 KAGALAGQIWEALNGT-EGLTQKQIKK-ATKLKADKDFFLGLGWLLREDKVV 56 (77)
T ss_dssp HHHHHHHHHHHHHTTS-SCEEHHHHHH-HHTCSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHH-HHCCCCHHHHHHHHHHHhhcCceE
Confidence 3456777888877655 4899999999 5999 9999999999999876554
No 418
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=28.81 E-value=20 Score=25.40 Aligned_cols=23 Identities=35% Similarity=0.963 Sum_probs=15.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCce
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGL 31 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~ 31 (254)
..|..||+ .+ +- --...|..||+
T Consensus 17 tlCrRCG~-~s--yH--~qK~~Ca~CGy 39 (94)
T 3iz5_l 17 TLCVRCGR-RS--FH--LQKSTCSSCGY 39 (94)
T ss_dssp EECTTTCS-EE--EE--GGGTEETTTCS
T ss_pred ceecCcCc-hh--hh--cccccccccCC
Confidence 35999998 32 22 23458999998
No 419
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=28.65 E-value=1.5e+02 Score=20.80 Aligned_cols=85 Identities=6% Similarity=0.005 Sum_probs=49.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhCCCCCCCCHHHHH-HHHHHHHHHhc-CCCCCHHHHHHHhcCC-CHHHHHHHHH
Q 025357 113 ISAMSDRLGLVTTIKDRANEIYKKVEDQKPLRGRNQEAIV-AACLYIACRQE-NKPRTVKEFCSVANGT-TKKEIGRAKE 189 (254)
Q Consensus 113 I~~i~~~L~Lp~~v~e~A~~i~k~~~~~~~~~Gr~~~~ia-AAclY~AcR~~-~~p~tl~eIa~~~~~v-~~~~i~~~~k 189 (254)
|..+|..++++.....+ +|++ . |.++..+. -.=+-.|.++- ....++.|||.. .|. +...+.+.|+
T Consensus 26 ~~~lA~~~~~S~~~l~r---~fk~------~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~-~Gf~~~s~F~r~Fk 94 (120)
T 3mkl_A 26 LARIASELLMSPSLLKK---KLRE------E-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVS-CGYHSVSYFIYVFR 94 (120)
T ss_dssp HHHHHHHTTCCHHHHHH---HHHH------T-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHH-TTCSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH---HHHH------c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-HCCCCHHHHHHHHH
Confidence 77889999999854433 4444 2 44443322 22233333332 346899999995 786 5788877776
Q ss_pred HHHHHhchhcccccccCCCCHHHHHHHHHhhcC
Q 025357 190 FIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIF 222 (254)
Q Consensus 190 ~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~ 222 (254)
+ ..| .+|.+|-.++...+.
T Consensus 95 ~---~~G-----------~tP~~yr~~~~~~~~ 113 (120)
T 3mkl_A 95 N---YYG-----------MTPTEYQERSAQRLS 113 (120)
T ss_dssp H---HHS-----------SCHHHHHHHC-----
T ss_pred H---HHC-----------cCHHHHHHHHHhccC
Confidence 5 444 357888877766553
No 420
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=28.64 E-value=17 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=15.7
Q ss_pred ceEEecCCCceEcCcCceeecc
Q 025357 14 EVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 14 ~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
+.-.|...+..+|..||..+..
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~~ 30 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAPA 30 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEEG
T ss_pred cccccccCCCCcChhccCcccc
Confidence 3345556677889999998853
No 421
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.56 E-value=19 Score=27.95 Aligned_cols=12 Identities=42% Similarity=1.160 Sum_probs=10.5
Q ss_pred ceEcCcCceeec
Q 025357 23 DTICSECGLVLE 34 (254)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (254)
-++|..||.|++
T Consensus 107 HliC~~CG~v~e 118 (162)
T 4ets_A 107 HMICKNCGKIIE 118 (162)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 499999999975
No 422
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=28.55 E-value=74 Score=23.45 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+.+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|.
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 10 AEQIFSATDRLMAR-EGLNQLSMLKLAKE-ANVAAGTIYLYFK 50 (188)
T ss_dssp HHHHHHHHHHHHHH-SCSTTCCHHHHHHH-HTCCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh-cCcccCCHHHHHHH-hCCCcchHHHHcC
Confidence 34555555554444 565 5999999995 8999999887653
No 423
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.46 E-value=86 Score=21.88 Aligned_cols=45 Identities=2% Similarity=-0.053 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|+. .|++..+|.+..+ |.. . ...+.+.++|..|+++.+
T Consensus 22 glsq~~lA~~-~gis~~~i~~~e~------g~~------~---p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 22 GLKNHQIAEL-LNVQTRTVAYYMS------GET------K---PDIEKLIRLATYFHLSID 66 (114)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHH------TSS------C---CCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHhCCCHH
Confidence 3789999994 8999999887632 111 1 124566677777766544
No 424
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.22 E-value=27 Score=29.68 Aligned_cols=25 Identities=16% Similarity=0.460 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
..+.|++|||+. +|||..|+.++++
T Consensus 8 ~~~~ti~diA~~-agVS~~TVSr~Ln 32 (344)
T 3kjx_A 8 KRPLTLRDVSEA-SGVSEMTVSRVLR 32 (344)
T ss_dssp --CCCHHHHHHH-HCCCSHHHHHHHT
T ss_pred CCCCCHHHHHHH-HCCCHHHHHHHHc
Confidence 346899999995 8999999998863
No 425
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.14 E-value=35 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCceEEecCCCceEcCcCceeeccc
Q 025357 3 DSYCADCKRLTEVVFDHSAGDTICSECGLVLEAY 36 (254)
Q Consensus 3 ~~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~ 36 (254)
...|+.|+.. +..-.-.--|..||.|+=..
T Consensus 161 ~~~C~~C~~~----F~~~~rrhhCr~CG~v~C~~ 190 (220)
T 1dvp_A 161 GRVCHRCRVE----FTFTNRKHHCRNCGQVFCGQ 190 (220)
T ss_dssp CSBCTTTCCB----CCSSSCCEECTTTCCEECST
T ss_pred CCccCCCCCc----cCCcccccccCCcCCEEChH
Confidence 3579999873 44556778899999998543
No 426
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=28.13 E-value=71 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.|+|+.||++. .+++..++.+.++.|.+.
T Consensus 50 ~~~~t~~eLa~~-l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 50 GIDLTMSELAAR-IGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ----CHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 357999999995 999999999999999764
No 427
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.03 E-value=26 Score=24.92 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=6.0
Q ss_pred CCCCCCCCC
Q 025357 4 SYCADCKRL 12 (254)
Q Consensus 4 ~~Cp~Cg~~ 12 (254)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 457888763
No 428
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=28.02 E-value=84 Score=23.48 Aligned_cols=39 Identities=5% Similarity=0.034 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
.+.+..|++=+..+ .|. ..|+++|++. +||+..+|-+.|
T Consensus 16 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 55 (203)
T 3f1b_A 16 EQQMLDAAVDVFSD-RGFHETSMDAIAAK-AEISKPMLYLYY 55 (203)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHH-TTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCcccccHHHHHHH-hCCchHHHHHHh
Confidence 34555665555544 454 6999999995 999999988764
No 429
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=27.98 E-value=1.5e+02 Score=21.89 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
...|++|+|+. .|++...|.+..+ |.. . ...+.+.+++..||++.+
T Consensus 80 ~glTq~elA~~-lGis~s~is~~E~------G~~------~---ps~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 80 KGFTQSELATA-AGLPQPYLSRIEN------SKQ------S---LQDKTVQKLANALGVSPL 125 (141)
T ss_dssp TTCCHHHHHHH-TTCCHHHHHHHHH------TCS------C---CCHHHHHHHHHHHTCCHH
T ss_pred cCCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCCCHH
Confidence 34799999995 9999999987743 211 1 135677888888887654
No 430
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=27.93 E-value=91 Score=22.73 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. .+++..++.+.++.|.+.
T Consensus 54 ~~~~~~eLa~~-l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 54 NPQTLNSIGRH-LDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp SSEEHHHHHHH-HTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 57899999995 899999999999999764
No 431
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=27.91 E-value=47 Score=23.86 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHH
Q 025357 122 LVTTIKDRANEIYK 135 (254)
Q Consensus 122 Lp~~v~e~A~~i~k 135 (254)
|++.-..-|..|.+
T Consensus 19 ls~~e~~ia~yil~ 32 (111)
T 2o3f_A 19 LPPSERKLADYILA 32 (111)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
No 432
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=27.88 E-value=45 Score=23.82 Aligned_cols=30 Identities=3% Similarity=0.065 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-|.++.||++. .+++..++.+.++.|.+.
T Consensus 45 ~~~~~~~ela~~-l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 45 SGKVSMSKLIEN-MGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp SCSEEHHHHHHH-CSSCCTTHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 347999999995 999999999999999875
No 433
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=27.88 E-value=75 Score=24.64 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHhchh
Q 025357 155 CLYIACRQENKPRTVKEFCSVANG---TTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 155 clY~AcR~~~~p~tl~eIa~~~~~---v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+.++..+...|-++|++. .. ++..++....+.|++.|+..
T Consensus 153 vl~~l~~~~~~~~s~~~Ia~~-l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 153 ILLFLAENAGKVVTREKLLET-FWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp HHHHHHHTTTSCEEHHHHHHH-HCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCCCceEcHHHHHHH-HhCCCCCcchHHHHHHHHHHHHhcc
Confidence 344555556778999999995 77 99999999999999999865
No 434
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=27.86 E-value=73 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~ 193 (254)
..|.++|++. .|++..+|.|.-+.|..
T Consensus 58 G~SyreIa~~-tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 58 KRTYLDISEK-TGASTATISRVNRSLNY 84 (107)
T ss_dssp TCCHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HCccHHHHHHHHHHHHc
Confidence 3899999994 99999999998666653
No 435
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.83 E-value=96 Score=23.38 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+...+..|++=+..+ .|. ..|+++|++. +||+..+|-+.|
T Consensus 18 ~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 58 (207)
T 2rae_A 18 TQDRISTVGIELFTE-QGFDATSVDEVAEA-SGIARRTLFRYF 58 (207)
T ss_dssp HHHHHHHHHHHHHHH-HCTTTSCHHHHHHH-TTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCcchHhhhC
Confidence 455666666655554 554 6999999995 999999998764
No 436
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.80 E-value=61 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKHLE 196 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~ 196 (254)
...|++|||.. +|++..++++.+.+..+.|.
T Consensus 202 ~g~s~~EIA~~-lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 202 EELPAKEVAKI-LETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp SCCCHHHHHHH-TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Confidence 35899999995 99999999877665555553
No 437
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=27.75 E-value=1.8e+02 Score=21.39 Aligned_cols=88 Identities=17% Similarity=0.058 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHH
Q 025357 105 NLIQAFKSISAMSDRLGLVT-TIKDRANEIYKKVEDQKPLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKE 183 (254)
Q Consensus 105 ~l~~a~~~I~~i~~~L~Lp~-~v~e~A~~i~k~~~~~~~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~ 183 (254)
.|.+....|.......|+|. ..++.+..|.+..-...+.=-+......+.==-...+..+ ..+..++|.. .++|+.+
T Consensus 31 ~L~el~~~ig~~L~~~Gi~~~~~ie~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~f~-G~n~~eLArk-YgLSer~ 108 (129)
T 1rr7_A 31 LLAELNDLLRGELSRLGVDPAHSLEIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWNDFN-GRNVSELTTR-YGVTFNT 108 (129)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSHHHHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHHCC-SSCHHHHHHH-HTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHHhC-CCCHHHHHHH-HCCCHHH
Confidence 33444443333333457875 2224555555554333333222222222221122223333 6799999995 9999999
Q ss_pred HHHHHHHHHHH
Q 025357 184 IGRAKEFIVKH 194 (254)
Q Consensus 184 i~~~~k~l~~~ 194 (254)
|++.+++.++.
T Consensus 109 I~~Ii~~~r~~ 119 (129)
T 1rr7_A 109 VYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 438
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.71 E-value=43 Score=24.19 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
-+.+..||++. .+++..++.+.++.|.+.
T Consensus 50 ~~~~~~ela~~-l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 50 SPVNVKKVVTE-LALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp SEEEHHHHHHH-TTCCTTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 37999999995 999999999999999875
No 439
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=27.67 E-value=15 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=13.4
Q ss_pred CCCCCCCCCCceEEe-cCCCceEcCcCcee
Q 025357 4 SYCADCKRLTEVVFD-HSAGDTICSECGLV 32 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D-~~~G~~vC~~CG~V 32 (254)
..||+|++ .+-+-. .-.....|..|+.-
T Consensus 15 ~~c~~c~~-~~~~~~~r~~~~~~~~~~~~~ 43 (155)
T 2ppt_A 15 LTCLACGQ-ANKVPSDRLAAGPKCGICGAG 43 (155)
T ss_dssp EECTTTCC-EEEEEGGGTTSCCBCTTTCCB
T ss_pred EECccccc-cccCCcccccCCCCCCcCCcc
Confidence 35666665 232222 22334556666544
No 440
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=27.65 E-value=1.2e+02 Score=22.67 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCC
Q 025357 142 PLRGRNQEAIVAACLYIACRQENKPRTVKEFCSVANGT 179 (254)
Q Consensus 142 ~~~Gr~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v 179 (254)
+++.........|||-++++..|.+.++.++... .++
T Consensus 8 ~~~Q~~~~dcglacLa~i~~~~g~~~s~~~L~~~-~~~ 44 (156)
T 3k8u_A 8 LVPQIDTRDCGPAVLASVAKHYGSNYSIAYLREL-SKT 44 (156)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHTTCCCCHHHHHHH-TTC
T ss_pred eEECCCCCCHHHHHHHHHHHHhCCCCCHHHHHHH-cCC
Confidence 3444455567889999999999999999999774 443
No 441
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=27.50 E-value=13 Score=28.66 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIV 192 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~ 192 (254)
-..|.|..+||+. .|++..++.|..++|.
T Consensus 165 ~~~~~t~~~iA~~-lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 165 FIQRVPQYLLASY-LGFTPEYLSEIRKKYI 193 (194)
T ss_dssp ------------------------------
T ss_pred HHHHCCHHHHHHH-hCCCHHHHHHHHHhhc
Confidence 3468999999995 9999999999998874
No 442
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.44 E-value=31 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=21.8
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEAYS 37 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e~~ 37 (254)
..|..|+.. +..-.-.--|..||.|+=..-
T Consensus 20 ~~C~~C~~~----Fs~~~RkHHCR~CG~ifC~~C 49 (120)
T 1y02_A 20 PSCKSCGAH----FANTARKQTCLDCKKNFCMTC 49 (120)
T ss_dssp CCCTTTCCC----CSSGGGCEECTTTCCEECGGG
T ss_pred CcccCcCCc----cccccccccCCCCCCeeCHHH
Confidence 469999873 455567788999999875443
No 443
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=27.38 E-value=89 Score=20.18 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=30.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcC--CCc
Q 025357 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIF--KNF 225 (254)
Q Consensus 168 tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~--l~~ 225 (254)
|..++|+. .||+..+|.+..+- .. + |.+.+.+++..|+ ++.
T Consensus 13 sq~~lA~~-lgvs~~~is~~e~g------~~------~----p~~~l~~ia~~l~~~v~~ 55 (79)
T 3bd1_A 13 SVSALAAS-LGVRQSAISNWRAR------GR------V----PAERCIDIERVTNGAVIC 55 (79)
T ss_dssp SHHHHHHH-HTCCHHHHHHHHHH------TC------C----CGGGHHHHHHHTTTSSCH
T ss_pred CHHHHHHH-HCCCHHHHHHHHHC------CC------C----CHHHHHHHHHHHCCCCcH
Confidence 89999995 89999999877432 11 1 2567888999888 553
No 444
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=27.22 E-value=1.9e+02 Score=21.44 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=27.5
Q ss_pred HhcCCC-CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 161 RQENKP-RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 161 R~~~~p-~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
...|.+ .|+.+||. ..++++.+|.+.+..|.+.
T Consensus 45 ~~~g~~~ps~~~LA~-~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 45 LEKGSYFPTPNQLQE-GMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp HTTTCCSCCHHHHHT-TSSSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHH-HHCcCHHHHHHHHHHHHHC
Confidence 455544 89999999 5999999999999998764
No 445
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=27.05 E-value=84 Score=23.73 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+...+..|++=+..+.-=...|+++|++. +||+..+|-+.|.
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~-agvs~~t~Y~~F~ 56 (212)
T 3knw_A 15 KRQHILDSGFHLVLRKGFVGVGLQEILKT-SGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHH-HTCCHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHcCCccCCHHHHHHH-hCCChHHHHHHCC
Confidence 34556666665555533346999999995 8999999887653
No 446
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=27.00 E-value=1.9e+02 Score=21.27 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=37.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcc-----cccc------cCCCCHHHHHHHHHhhcCCCcc
Q 025357 168 TVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMG-----QSVE------MGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 168 tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~-----~~~~------~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
...+||+. .+++...+.|++|...+..=...+ ..|. -..+++++||..++++|.+...
T Consensus 50 LYp~IA~k-~~TT~s~VEraIR~aIe~aw~~g~~~~l~~ifg~t~~~~~~kPTnsEFI~~iad~Lr~~~~ 118 (120)
T 1fc3_A 50 LYPDIAKK-YNTTASRVERAIRHAIEVAWSRGNLESISSLFGYTVSVSKAKPTNSEFIAMVADKLRLEHK 118 (120)
T ss_dssp HHHHHHHH-HTSCHHHHHHHHHHHHHHHHHSSCTTTTHHHHCHHHHTCSSCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCcccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 44589985 899998888888755443211100 0010 1446799999999999976554
No 447
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=26.94 E-value=87 Score=24.73 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhc-----CCCHHHHHHHHHHHHHHhchh
Q 025357 155 CLYIACRQENKPRTVKEFCSVAN-----GTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 155 clY~AcR~~~~p~tl~eIa~~~~-----~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+.++..+...|-++|++. . +++..++....+.|++.|+..
T Consensus 161 vL~~l~~~~~~~~s~~eIa~~-lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 161 LLVALARKPRQVFTRDVLLEQ-VWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp HHHHHHHSTTCCBCHHHHHHH-HTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHCCCceecHHHHHHH-HcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 344455566777899999985 6 788889988888888888764
No 448
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=26.89 E-value=9 Score=27.62 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=9.2
Q ss_pred CCCCCCCCCCC
Q 025357 1 MADSYCADCKR 11 (254)
Q Consensus 1 ~~~~~Cp~Cg~ 11 (254)
|+...||.||.
T Consensus 1 Mm~I~CP~CG~ 11 (99)
T 2gag_D 1 MMLIDCPNCGP 11 (99)
T ss_dssp CCEEEETTTEE
T ss_pred CCEecCCCCCC
Confidence 67788999994
No 449
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=26.85 E-value=1.3e+02 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=25.0
Q ss_pred CCCC--HHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 025357 165 KPRT--VKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~t--l~eIa~~~~-~v~~~~i~~~~k~l~~~ 194 (254)
-|.+ +.||++. . |++..++.+..+.|.+.
T Consensus 39 g~~~~~~~eL~~~-l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 39 GSTRQNFNDIRSS-IPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp SSSCBCHHHHHHT-STTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHH-ccCCCHHHHHHHHHHHHHC
Confidence 4666 9999994 8 99999999999998764
No 450
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=26.81 E-value=13 Score=25.58 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=7.1
Q ss_pred ceEcCcCceee
Q 025357 23 DTICSECGLVL 33 (254)
Q Consensus 23 ~~vC~~CG~Vl 33 (254)
.+.|.+||...
T Consensus 37 ~I~CnDC~~~s 47 (79)
T 2k2d_A 37 DILCNDCNGRS 47 (79)
T ss_dssp EEEESSSCCEE
T ss_pred EEECCCCCCCc
Confidence 35677777664
No 451
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=26.76 E-value=1.2e+02 Score=23.00 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+...+..|++=+-.+ .|. ..|+.+|++. +||++.+|-+.|
T Consensus 8 ~r~~Il~aA~~lf~~-~G~~~ts~~~IA~~-aGvs~gtlY~~F 48 (197)
T 2gen_A 8 RKDEILQAALACFSE-HGVDATTIEMIRDR-SGASIGSLYHHF 48 (197)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHH-HCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHHH-HCCChHHHHHHC
Confidence 344555555554444 454 6899999994 899998888765
No 452
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=26.48 E-value=72 Score=23.99 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+.+.+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|.
T Consensus 8 ~r~~Il~aA~~l~~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 8 AEQRLKRAALELYSE-HGYDNVTVTDIAER-AGLTRRSYFRYFP 49 (195)
T ss_dssp HHHHHHHHHHHHHHH-SCGGGCCHHHHHHH-TTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHh-cCccccCHHHHHHH-hCCCHHHHHHHcC
Confidence 345556555555444 565 5999999995 9999999988764
No 453
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=26.39 E-value=30 Score=21.70 Aligned_cols=21 Identities=33% Similarity=0.838 Sum_probs=13.0
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECG 30 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG 30 (254)
..||.|++...++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 4699998744332 25677774
No 454
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=26.34 E-value=97 Score=21.78 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 025357 165 KPRTVKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 165 ~p~tl~eIa~~~~-~v~~~~i~~~~k~l~~~ 194 (254)
-|.++.||++. . +++..++.+.++.|.+.
T Consensus 34 ~~~~~~eLa~~-l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 34 GTKRNGELMRA-LDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp SCBCHHHHHHH-STTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-hccCCHHHHHHHHHHHHHC
Confidence 37999999995 8 99999999999999874
No 455
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=26.29 E-value=98 Score=21.21 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=29.6
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhc-hhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLE-AEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~-~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|.. .|++..+|.+..+ | .. . ...+.+.++|..|+++.+
T Consensus 14 gltq~~lA~~-~gis~~~i~~~e~------g~~~------~---p~~~~l~~ia~~l~v~~~ 59 (111)
T 1b0n_A 14 GYSLSELAEK-AGVAKSYLSSIER------NLQT------N---PSIQFLEKVSAVLDVSVH 59 (111)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHT------TCCS------C---CCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHH-HCcCHHHHHHHHc------CCCC------C---CCHHHHHHHHHHHCcCHH
Confidence 4789999994 8999988876632 1 11 1 124667777777776544
No 456
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.26 E-value=24 Score=21.93 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCCCCCCC----Cce-EEecCCCceEcCcCceeec
Q 025357 5 YCADCKRL----TEV-VFDHSAGDTICSECGLVLE 34 (254)
Q Consensus 5 ~Cp~Cg~~----~~l-v~D~~~G~~vC~~CG~Vl~ 34 (254)
.|+.||.. ..+ .....+....|..||....
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 48888851 001 1223345578888887653
No 457
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=26.26 E-value=77 Score=23.95 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
.+.+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 16 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 55 (220)
T 3lhq_A 16 RQHILDVALRLFSQ-QGVSATSLAEIANA-AGVTRGAIYWHF 55 (220)
T ss_dssp HHHHHHHHHHHHHH-HCSTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCceeehhhc
Confidence 44555555555444 465 5999999995 899999888764
No 458
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=26.23 E-value=1.3e+02 Score=23.44 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Q 025357 154 ACLYIACRQENKPRTVKEFCSVANGTT-KKEIGRAKEFIVKHL 195 (254)
Q Consensus 154 AclY~AcR~~~~p~tl~eIa~~~~~v~-~~~i~~~~k~l~~~l 195 (254)
..|--+....|.|.|.+|+|+. +|++ ..+|.+..+.|.+..
T Consensus 13 ~~i~~~~~~~g~~ps~~elA~~-lgiss~~tv~~~~~~l~~~~ 54 (202)
T 1jhf_A 13 DLIRDHISQTGMPPTRAEIAQR-LGFRSPNAAEEHLKALARKG 54 (202)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHH-TTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCccHHHHHHH-hCCCChHHHHHHHHHHHHCC
Confidence 3344455566887799999994 9999 999999988887753
No 459
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=26.20 E-value=96 Score=23.39 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQEN-KPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~-~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+.+..|++=+..+ .| ...|+++|++. +||+..+|-+.|.
T Consensus 20 r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~-agvs~~t~Y~~F~ 60 (212)
T 1pb6_A 20 KKAILSAALDTFSQ-FGFHGTRLEQIAEL-AGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHH-TTSCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHH-cCcchhhHHHHHHH-HCCChhHHHHhCC
Confidence 44556665555544 45 46899999995 8999999887753
No 460
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=26.18 E-value=1e+02 Score=22.95 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHH
Q 025357 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 146 r~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
.+.+.+..|++=+..+. |...|+++|++. +||++.+|-+.|
T Consensus 9 ~~r~~Il~aA~~lf~~~-G~~~t~~~IA~~-aGvs~~tly~~F 49 (190)
T 3jsj_A 9 SPRERLLEAAAALTYRD-GVGIGVEALCKA-AGVSKRSMYQLF 49 (190)
T ss_dssp CHHHHHHHHHHHHHHHH-CTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHh-CccccHHHHHHH-hCCCHHHHHHHc
Confidence 34556666666555554 433999999995 899999888764
No 461
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.98 E-value=97 Score=23.48 Aligned_cols=40 Identities=20% Similarity=0.047 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+...+..|++=+-.+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 12 ~r~~Il~aA~~lf~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 52 (216)
T 3f0c_A 12 KLELIINAAQKRFAH-YGLCKTTMNEIASD-VGMGKASLYYYF 52 (216)
T ss_dssp HHHHHHHHHHHHHHH-HCSSSCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCCCcCCHHHHHHH-hCCCHHHHHHHc
Confidence 345555555554444 565 6999999995 899999888764
No 462
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.87 E-value=80 Score=23.68 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+.+..|++=+..+ .|. ..|+++||+. +||++.+|-+.|.
T Consensus 14 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~-agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 14 RQKILTCSLDLFIE-KGYYNTSIRDIIAL-SEVGTGTFYNYFV 54 (202)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHH-HCSCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCchhHHHHcC
Confidence 34555555555444 465 6999999995 8999999987754
No 463
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.70 E-value=1.1e+02 Score=21.72 Aligned_cols=45 Identities=4% Similarity=-0.064 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
..|+.++|.. .|++..+|.+..+ |.. . ...+.+.++|..|+++.+
T Consensus 25 glsq~~lA~~-~gis~~~is~~E~------g~~------~---p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 25 GLTREQVGAM-IEIDPRYLTNIEN------KGQ------H---PSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp TCCHHHHHHH-HTCCHHHHHHHHH------SCC------C---CCHHHHHHHHHHHTCCSH
T ss_pred CCCHHHHHHH-hCcCHHHHHHHHC------CCC------C---CCHHHHHHHHHHHCcCHH
Confidence 4789999995 8999999887632 111 1 124566677777776654
No 464
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=25.68 E-value=63 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
-.|+.|+|+. ++|++.+|-|-.++|
T Consensus 35 ~~si~elA~~-~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 35 NMTSQEIANQ-LETSSTSIIRLSKKV 59 (107)
T ss_dssp TCCHHHHHHH-HTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHH-HCCCHHHHHHHHHHh
Confidence 4899999995 899999998775543
No 465
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=25.63 E-value=1.7e+02 Score=20.29 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcchh
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFFFL 228 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~v~ 228 (254)
....|+.++|+. .|++..+|.+..+ +.. . ...+.+.+++..|+++.+-.
T Consensus 47 ~~glsq~elA~~-~gis~~~is~~E~------G~~------~---p~~~~l~~ia~~l~v~~~e~ 95 (107)
T 2jvl_A 47 EPTMTQAELGKE-IGETAATVASYER------GTA------T---PDQNILSKMERVLNVKLRGA 95 (107)
T ss_dssp SSCCCHHHHHHH-HTCCHHHHHHHTT------TCS------C---CCHHHHHHHHHTTTCBSSSS
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc------CCC------C---CCHHHHHHHHHHHCcCHhhh
Confidence 345889999995 8999988876521 111 1 12577899999999887653
No 466
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=25.60 E-value=1.3e+02 Score=22.31 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+..+..|++=+-.+ .|. ..|+++||+. +||++.+|-+.|
T Consensus 9 ~~~Il~aA~~lf~~-~G~~~~t~~~IA~~-agvs~~tlY~~F 48 (192)
T 2zcm_A 9 KDKIIDNAITLFSE-KGYDGTTLDDISKS-VNIKKASLYYHY 48 (192)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHH-TTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCChHHHHHHC
Confidence 34455555544444 454 6899999995 899999988765
No 467
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.49 E-value=75 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 146 RNQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 146 r~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
.+.+.++.|++=+..+ .| ..|+++|++. +||++.+|-+.|.
T Consensus 11 ~~r~~Il~aA~~l~~~-~G-~~s~~~IA~~-aGvs~~tlY~hF~ 51 (213)
T 2g7g_A 11 LDRERIAEAALELVDR-DG-DFRMPDLARH-LNVQVSSIYHHAK 51 (213)
T ss_dssp CCHHHHHHHHHHHHHH-HS-SCCHHHHHHH-TTSCHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHH-cC-CCCHHHHHHH-hCCCHhHHHHHcC
Confidence 4566777777776665 45 9999999995 9999999987653
No 468
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.44 E-value=1.4e+02 Score=22.68 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
...+..|++=+-.+ .|. ..|+++|++. +||++.+|-+.|.
T Consensus 10 r~~Il~aA~~lf~~-~G~~~~s~~~IA~~-aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 10 KARIFEAAVAEFAR-HGIAGARIDRIAAE-ARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHHHHH-HTTTSCCHHHHHHH-HTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCHHHHHHHcC
Confidence 44455555544444 554 6999999995 8999999987764
No 469
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=25.28 E-value=78 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVK 193 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~ 193 (254)
.-|.+..||++ ..|++..++.+.++.|.+
T Consensus 29 ~~~~~~~eLa~-~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAK-PFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHT-TCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHH-HhCcCHHHHHHHHHHHHH
Confidence 35789999999 499999999999999975
No 470
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=25.25 E-value=43 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCCCCCCCCCceEEecCCCceEcCc---Cceeeccccc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSE---CGLVLEAYSV 38 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~---CG~Vl~e~~i 38 (254)
..||.||+ .++....+-.+.|.+ |-.-+-++++
T Consensus 406 ~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~ 441 (671)
T 2owo_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLK 441 (671)
T ss_dssp SBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHH
T ss_pred CCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHH
Confidence 57999998 466655556677994 7766655553
No 471
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=25.22 E-value=42 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.720 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceeecc
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVLEA 35 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl~e 35 (254)
..|..|++ +++--..--+.|.+||+++-.
T Consensus 12 t~C~~C~~---~l~g~~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 12 TFCDHCGS---LLWGLVKQGLKCEDCGMNVHH 40 (50)
T ss_dssp CBCTTTCC---BCCSSSSCEEEETTTCCEECH
T ss_pred CCcCCCCc---eeeccCCccCEeCCCCCeECH
Confidence 56999986 234322233679999988743
No 472
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=25.13 E-value=50 Score=24.69 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+. ...|+.+|++. +||++.+|-+.|
T Consensus 16 r~~Il~aA~~lf~~~--~~~t~~~Ia~~-agvs~~t~Y~~F 53 (190)
T 2v57_A 16 RRAILDAAMLVLADH--PTAALGDIAAA-AGVGRSTVHRYY 53 (190)
T ss_dssp HHHHHHHHHHHHTTC--TTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc--CCCCHHHHHHH-hCCCHHHHHHHc
Confidence 445555555544444 67999999995 899999988765
No 473
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=25.07 E-value=49 Score=24.46 Aligned_cols=31 Identities=6% Similarity=0.092 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 163 ENKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.+-+.++.||++. .+++..++.+.++.|.+.
T Consensus 59 ~~~~~~~~ela~~-l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 59 NPDGLSMGKLSGA-LKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp CTTCEEHHHHHHH-CSSCCSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 4458999999995 999999999999999775
No 474
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.06 E-value=93 Score=21.04 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHhch
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKHLEA 197 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~ 197 (254)
..|..+||.. +|+++..|.+..-.|.+.=.+
T Consensus 29 ~~Ta~~IAkk-Lg~sK~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 29 YTTAISLSNR-LKINKKKINQQLYKLQKEDTV 59 (75)
T ss_dssp EECHHHHHHH-TTCCHHHHHHHHHHHHHTTSE
T ss_pred chHHHHHHHH-HCCCHHHHHHHHHHHHHCCCE
Confidence 3899999995 999999999998777765444
No 475
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.85 E-value=65 Score=23.32 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHhcCC---CHHH-HHHHHHHHHHHhch
Q 025357 163 ENKPRTVKEFCSVANGT---TKKE-IGRAKEFIVKHLEA 197 (254)
Q Consensus 163 ~~~p~tl~eIa~~~~~v---~~~~-i~~~~k~l~~~l~~ 197 (254)
.+.|.|.+||+. ..|+ ++++ |-.-+..|.+.++-
T Consensus 21 ~~~plta~ei~~-~l~i~~~~~ke~Vy~hLeHIaksl~r 58 (105)
T 2gmg_A 21 LEGDYSPSELAR-ILDMRGKGSKKVILEDLKVISKIAKR 58 (105)
T ss_dssp TTSCBCTTHHHH-SSCCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHH-HhCCCCCChHHHHHHHHHHHHHHHhc
Confidence 378999999999 5999 7888 87777888887754
No 476
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.79 E-value=91 Score=23.29 Aligned_cols=39 Identities=5% Similarity=0.053 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++-+..+ .|. ..|+++|++. +||+..+|-+.|
T Consensus 19 r~~Il~aa~~l~~~-~G~~~~s~~~Ia~~-agvs~~t~Y~~F 58 (206)
T 3kz9_A 19 KQQLMEIALEVFAR-RGIGRGGHADIAEI-AQVSVATVFNYF 58 (206)
T ss_dssp HHHHHHHHHHHHHH-SCCSSCCHHHHHHH-HTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-cCcccccHHHHHHH-hCCCHHHHHHHc
Confidence 34555555555444 565 4999999995 899999888765
No 477
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=24.76 E-value=1.5e+02 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVAN-GTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~-~v~~~~i~~~~k~l~~~ 194 (254)
.-|.++.||++. . +++...+.+..++|.+.
T Consensus 37 ~g~~rf~eL~~~-l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRI-CPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHH-CTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-hcccCHHHHHHHHHHHHHC
Confidence 458999999995 7 99999999999999874
No 478
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=24.60 E-value=97 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=24.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 168 TVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 168 tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
++.||++. .+++..++.+.++.|.+.
T Consensus 52 ~~~~la~~-l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 52 SMVYLANR-YFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp EHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHH-HCCChhHHHHHHHHHHHC
Confidence 99999995 999999999999999875
No 479
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=24.52 E-value=84 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 146 RNQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 146 r~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
.+...+..|++=+..+. |. ..|+++|++. +||++.+|-+.|
T Consensus 11 ~~r~~il~aa~~lf~~~-G~~~~tv~~Ia~~-agvs~~t~Y~~F 52 (196)
T 3he0_A 11 DKRDQILAAAEQLIAES-GFQGLSMQKLANE-AGVAAGTIYRYF 52 (196)
T ss_dssp CCHHHHHHHHHHHHHHH-CTTTCCHHHHHHH-HTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh-CcccCCHHHHHHH-hCCCcchHHHhc
Confidence 34556666666655554 54 5999999995 899998887553
No 480
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.51 E-value=77 Score=23.44 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~-agvs~~t~Y~~F 49 (194)
T 2g7s_A 10 ADDILQCARTLIIR-GGYNSFSYADISQV-VGIRNASIHHHF 49 (194)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHH-HCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCchHHHHHc
Confidence 44555555555554 554 5999999995 899999988765
No 481
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.48 E-value=41 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=13.6
Q ss_pred CCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 5 YCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 5 ~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
.|..|+.. ....+|-.||.|-
T Consensus 36 ~C~~C~~~--------~~LwlCL~CG~vg 56 (129)
T 2g45_A 36 KCSKCDMR--------ENLWLNLTDGSIL 56 (129)
T ss_dssp CCSSSSCC--------SSEEEETTTCCEE
T ss_pred cCccccCc--------CceEEeccCCccc
Confidence 47777652 2457788888874
No 482
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.45 E-value=1e+02 Score=23.13 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
...+..|++=+-.+ .|. ..|+.|||+. +||++.+|-+.|.
T Consensus 14 r~~Il~aA~~lf~e-~G~~~~t~~~IA~~-agvsk~tlY~~F~ 54 (192)
T 2fq4_A 14 QKAILSASYELLLE-SGFKAVTVDKIAER-AKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHH-HTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHH-cCcccccHHHHHHH-cCCCHHHHHHHCC
Confidence 34555555554444 454 6999999995 8999999988764
No 483
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.45 E-value=96 Score=24.50 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 166 PRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 166 p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+.++.||++. .+++..++.+.++.|.+.
T Consensus 62 ~~t~~eLa~~-l~i~~stvs~~l~~Le~~ 89 (207)
T 2fxa_A 62 GASISEIAKF-GVMHVSTAFNFSKKLEER 89 (207)
T ss_dssp SEEHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHH-HCCCHHHHHHHHHHHHHC
Confidence 7999999995 999999999999999764
No 484
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=24.42 E-value=33 Score=33.21 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=12.9
Q ss_pred CCCCCCCCCCceEEecCCCceEcCcCceee
Q 025357 4 SYCADCKRLTEVVFDHSAGDTICSECGLVL 33 (254)
Q Consensus 4 ~~Cp~Cg~~~~lv~D~~~G~~vC~~CG~Vl 33 (254)
..||.||.. ...|+. |..||.++
T Consensus 141 gtcP~c~~~------~~~Gd~-c~~~G~~l 163 (722)
T 1rqg_A 141 GTCPYCGAE------DQKGDQ-CEVCGRPL 163 (722)
T ss_dssp SBCSSSCCS------CCCTTT-CSSSCCCC
T ss_pred cccCccCCc------cCCcch-hhhccccc
Confidence 358888862 234543 55566554
No 485
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=24.34 E-value=64 Score=23.33 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
+-|.++.||++. .+++..++.+.+++|.+.
T Consensus 48 ~~~~t~~eLa~~-l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 48 DEKLNIKKLGER-VFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp TCEEEHHHHHHH-HTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHH-HCCChhhHHHHHHHHHHC
Confidence 448999999995 899999999999999874
No 486
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.21 E-value=1.1e+02 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+...+..|++=+..+ .|. ..|+.+|++ .+||++.+|-+.|
T Consensus 11 ~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~-~agvs~~t~Y~~F 51 (216)
T 3s5r_A 11 TRELLLDAATTLFAE-QGIAATTMAEIAA-SVGVNPAMIHYYF 51 (216)
T ss_dssp HHHHHHHHHHHHHHH-HCTTTCCHHHHHH-TTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHH-HHCCCHHHHHHHc
Confidence 345556665555544 564 599999999 4999999998775
No 487
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=24.21 E-value=87 Score=24.49 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAKE 189 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~k 189 (254)
+++.++.|++=+..+.-=...|+++|++. +||+..+|-+.|.
T Consensus 3 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~-aGvs~~tlY~hf~ 44 (209)
T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQA-MDVQAGALYRYFA 44 (209)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHH-HTSCHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCCcccCCHHHHHHH-hCCCcchHHhhcC
Confidence 45667777777666543335999999995 9999999987764
No 488
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=24.13 E-value=1.1e+02 Score=22.81 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+.+.+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 9 ~r~~Il~aA~~l~~~-~G~~~~t~~~IA~~-Agvs~~tly~~F 49 (194)
T 3dpj_A 9 TRDQIVAAADELFYR-QGFAQTSFVDISAA-VGISRGNFYYHF 49 (194)
T ss_dssp HHHHHHHHHHHHHHH-HCTTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-cCcccCCHHHHHHH-HCCChHHHHHHc
Confidence 345556665655554 454 6999999995 899999888764
No 489
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=24.06 E-value=89 Score=23.04 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 147 NQEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 147 ~~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+...+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 11 ~r~~Il~aa~~l~~~-~G~~~~t~~~IA~~-agvs~~t~Y~~F 51 (191)
T 3on4_A 11 TKERILAVAEALIQK-DGYNAFSFKDIATA-INIKTASIHYHF 51 (191)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHH-hCCCcchhhhcC
Confidence 445555555555544 565 5999999995 899999988764
No 490
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.04 E-value=1e+02 Score=23.34 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHH
Q 025357 149 EAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 149 ~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
+.+..|++=+..+ .|...|+++||+. +||++.+|-+.|
T Consensus 16 ~~Il~aA~~lf~~-~G~~~t~~~IA~~-agvs~~tlY~~F 53 (196)
T 2qwt_A 16 ARVLEVAYDTFAA-EGLGVPMDEIARR-AGVGAGTVYRHF 53 (196)
T ss_dssp HHHHHHHHHHHHH-TCTTSCHHHHHHH-TTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHh-cCCCCCHHHHHHH-hCCCHHHHHHHC
Confidence 3444444444433 5567999999994 899998888664
No 491
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=23.96 E-value=70 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFI 191 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l 191 (254)
.|.+||++. +|++..+|.|.-+.|
T Consensus 76 ~syreIA~~-~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 76 YTYATIEQE-SGASTATISRVKRSL 99 (119)
T ss_dssp CCHHHHHHH-HCCCHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCCCHHHHHHHHHHH
Confidence 899999995 999999999976554
No 492
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.93 E-value=88 Score=24.36 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhc-----CCCHHHHHHHHHHHHHHhchh
Q 025357 155 CLYIACRQENKPRTVKEFCSVAN-----GTTKKEIGRAKEFIVKHLEAE 198 (254)
Q Consensus 155 clY~AcR~~~~p~tl~eIa~~~~-----~v~~~~i~~~~k~l~~~l~~~ 198 (254)
.+.+.++..+...|-++|++. . +++..++....+.|++.|+..
T Consensus 164 vL~~l~~~~~~~~s~~~Ia~~-lw~~~~~~s~~tv~~hi~~i~~Kl~~~ 211 (230)
T 2oqr_A 164 LLEYLMRNSGRVLTRGQLIDR-VWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp HHHHHHHTTTSCEEHHHHHHH-HTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhCCCceEcHHHHHHH-hcCCCCCCCCcCHHHHHHHHHHHHhhC
Confidence 344445566777899999984 6 788899999999999998865
No 493
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=23.90 E-value=1.3e+02 Score=21.09 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHhchhcccccccCCCCHHHHHHHHHhhcCCCcc
Q 025357 164 NKPRTVKEFCSVANGTTKKEIGRAKEFIVKHLEAEMGQSVEMGTIHASDYLVIFLLNIFKNFF 226 (254)
Q Consensus 164 ~~p~tl~eIa~~~~~v~~~~i~~~~k~l~~~l~~~~~~~~~~~~~~p~~~i~r~~~~L~l~~~ 226 (254)
...+|+.|+|+. .|++..+|.+..+ |-. .+ ..+.+.+++..|+++.+
T Consensus 25 ~~gltq~eLA~~-lGis~~~is~ie~------G~~--------~~-s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 25 LDKMSANQLAKH-LAIPTNRVTAILN------GAR--------SI-TADTALRLAKFFGTTPE 71 (104)
T ss_dssp TTSCCHHHHHHH-HTSCHHHHHHHHT------TSS--------CC-CHHHHHHHHHHHTCCHH
T ss_pred HcCCCHHHHHHH-HCcCHHHHHHHHc------CCC--------CC-CHHHHHHHHHHHCcCHH
Confidence 345899999994 8999999887632 111 11 24667777777777654
No 494
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=23.87 E-value=80 Score=24.07 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+ .|. ..|+.+|++. +||++.+|-+.|
T Consensus 5 r~~Il~aA~~lf~~-~G~~~~s~~~IA~~-Agvs~~t~Y~~F 44 (212)
T 3rh2_A 5 RDKIIQASLELFNE-HGERTITTNHIAAH-LDISPGNLYYHF 44 (212)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCcccCCHHHHHHH-hCCCHHHHHHHC
Confidence 44555555554444 565 4999999995 899999988765
No 495
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.87 E-value=1.3e+02 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENKPRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+ .|...|+.+|++. +||++.+|-+.|
T Consensus 17 r~~Il~aA~~lf~~-~G~~~s~~~IA~~-agvs~~tlY~~F 55 (194)
T 2q24_A 17 RDKILAAAVRVFSE-EGLDAHLERIARE-AGVGSGTLYRNF 55 (194)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCHHHHHHH-TTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-cCcCCCHHHHHHH-hCCChHHHHHHc
Confidence 34455554444444 4544999999995 999999988664
No 496
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=23.78 E-value=67 Score=20.50 Aligned_cols=23 Identities=17% Similarity=-0.055 Sum_probs=19.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEF 190 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~ 190 (254)
+++.|+++. +|++..+|.+..+.
T Consensus 11 l~~~eva~~-lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMAD-TGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHH-HSSCHHHHHHHHHH
T ss_pred cCHHHHHHH-HCcCHHHHHHHHHC
Confidence 789999995 99999999776553
No 497
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=23.78 E-value=16 Score=21.01 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=15.7
Q ss_pred CCCCCCCceEEecCCCceEcCcC
Q 025357 7 ADCKRLTEVVFDHSAGDTICSEC 29 (254)
Q Consensus 7 p~Cg~~~~lv~D~~~G~~vC~~C 29 (254)
|.|+++ --..|.-.|-..|+.|
T Consensus 6 ~~C~KP-C~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 6 PICNKP-CKTHDDCSGAWFCQAC 27 (38)
T ss_dssp TTTTCB-CSSSSSSCCCSSCCEE
T ss_pred cccCCC-ccCccccccchHHHHH
Confidence 567763 2346888899999887
No 498
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.71 E-value=93 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+ .|. ..|+++|++. +||+..+|-+.|
T Consensus 33 r~~Il~aa~~l~~~-~G~~~~tv~~Ia~~-agvs~~t~Y~~F 72 (218)
T 3dcf_A 33 RTQIIKVATELFRE-KGYYATSLDDIADR-IGFTKPAIYYYF 72 (218)
T ss_dssp HHHHHHHHHHHHHH-TCTTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCcccCcHHHHHHH-hCCCHHHHHHHc
Confidence 34455555544433 564 5999999995 899998888664
No 499
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.69 E-value=1e+02 Score=21.40 Aligned_cols=27 Identities=0% Similarity=-0.194 Sum_probs=23.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 025357 167 RTVKEFCSVANGTTKKEIGRAKEFIVKH 194 (254)
Q Consensus 167 ~tl~eIa~~~~~v~~~~i~~~~k~l~~~ 194 (254)
.++.+||.. ++++..+|.+.++.....
T Consensus 34 ~s~~~ia~~-lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 34 IRPCVISRQ-LRVSHGCVSKILNRYQET 60 (128)
T ss_dssp CCHHHHHHH-HTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHHhh
Confidence 678999995 999999999998887654
No 500
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=23.68 E-value=96 Score=23.63 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCHHHHHHHhcCCCHHHHHHHH
Q 025357 148 QEAIVAACLYIACRQENK-PRTVKEFCSVANGTTKKEIGRAK 188 (254)
Q Consensus 148 ~~~iaAAclY~AcR~~~~-p~tl~eIa~~~~~v~~~~i~~~~ 188 (254)
...+..|++=+..+ .|. ..|+++|++. +||++.+|-+.|
T Consensus 32 r~~Il~aA~~l~~~-~G~~~~t~~~IA~~-aGvs~~t~Y~~F 71 (222)
T 3bru_A 32 HQSLIRAGLEHLTE-KGYSSVGVDEILKA-ARVPKGSFYHYF 71 (222)
T ss_dssp HHHHHHHHHHHHHH-SCTTTCCHHHHHHH-HTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-cCCCcCcHHHHHHH-hCCCcchhhhhC
Confidence 44555555554444 564 6899999995 899998888765
Done!