BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025358
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 33/137 (24%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTE-------------LQDLERSRQLRRALGLDNLL 171
N++ L+ G V V L +TE L L ++ + R L N+L
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL 167
Query: 172 YTPDADFSCFADLALTS 188
+T D D AD +++
Sbjct: 168 FTLDGDIK-LADFGVSA 183
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 33/137 (24%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTE-------------LQDLERSRQLRRALGLDNLL 171
N++ L+ G V V L +TE L L ++ + R L N+L
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL 167
Query: 172 YTPDADFSCFADLALTS 188
+T D D AD +++
Sbjct: 168 FTLDGDIK-LADFGVSA 183
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 33/137 (24%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 55 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 107
Query: 129 NIYALV----GVPVVTVQLRYNGWVTE-------------LQDLERSRQLRRALGLDNLL 171
N++ L+ G V V L +TE L L ++ + R L N+L
Sbjct: 108 NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL 167
Query: 172 YTPDADFSCFADLALTS 188
+T D D AD +++
Sbjct: 168 FTLDGDIK-LADFGVSA 183
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 33/137 (24%)
Query: 77 KAANAETYVKGLAMSKATDKK--------VVQADAYVAACDVPGIKRLLPSSWREMKFFN 128
KA N ET V LA +K D K +V+ D +A+CD P I +LL + + E N
Sbjct: 28 KAQNKETSV--LAAAKVIDTKSEEELEDYMVEID-ILASCDHPNIVKLLDAFYYE----N 80
Query: 129 NIYALV----GVPVVTVQLRYNGWVTE-------------LQDLERSRQLRRALGLDNLL 171
N++ L+ G V V L +TE L L ++ + R L N+L
Sbjct: 81 NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL 140
Query: 172 YTPDADFSCFADLALTS 188
+T D D AD +++
Sbjct: 141 FTLDGDIK-LADFGVSA 156
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 74 LYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD--VPGIKRLLPSSWREMKFFNNIY 131
L +K N + + L +K +DK + D+Y+ D + + LP ++
Sbjct: 3 LLEKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYK--------- 53
Query: 132 ALVGVPVVTVQLRYNGWVTELQDL--ERSRQLRRALGLDNLLYTPDADFSCFADLALTSP 189
G P+ + R N + + DL S+ +G+D L P + F + A
Sbjct: 54 ---GNPI--IDFRNNIIIPGMNDLHAHASQYKNLGIGMDKEL-LPWLNNYTFPEEAKFLN 107
Query: 190 EDYYREGQGSLLQCVLTPG 208
DY ++ G L++ ++ G
Sbjct: 108 VDYAKKTYGRLIKDLIKNG 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,500,964
Number of Sequences: 62578
Number of extensions: 304634
Number of successful extensions: 1013
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 7
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)