Query 025358
Match_columns 254
No_of_seqs 157 out of 1266
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025358hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 3E-34 6.5E-39 272.7 23.1 251 1-253 249-501 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 6.4E-31 1.4E-35 246.6 23.5 251 1-253 173-425 (474)
3 PLN02612 phytoene desaturase 100.0 2.3E-26 5E-31 219.9 23.8 228 1-252 262-495 (567)
4 TIGR02731 phytoene_desat phyto 99.9 5.9E-23 1.3E-27 191.5 23.5 227 1-252 167-403 (453)
5 TIGR03467 HpnE squalene-associ 99.8 3E-18 6.6E-23 157.1 21.0 216 1-252 150-368 (419)
6 PRK07233 hypothetical protein; 99.8 2.7E-17 5.8E-22 151.8 22.0 222 1-253 150-379 (434)
7 PRK07208 hypothetical protein; 99.7 2.1E-15 4.5E-20 141.7 24.3 226 1-251 151-405 (479)
8 COG3349 Uncharacterized conser 99.7 8.4E-17 1.8E-21 148.5 11.3 234 1-245 168-404 (485)
9 TIGR02733 desat_CrtD C-3',4' d 99.6 7.1E-15 1.5E-19 138.7 18.0 202 11-234 200-413 (492)
10 COG1232 HemY Protoporphyrinoge 99.6 4.6E-14 1E-18 130.4 17.6 215 1-251 153-391 (444)
11 TIGR02730 carot_isom carotene 99.5 2.1E-13 4.6E-18 128.8 17.4 197 13-235 200-414 (493)
12 PRK12416 protoporphyrinogen ox 99.5 9.6E-13 2.1E-17 123.2 20.1 216 1-250 164-405 (463)
13 PRK11883 protoporphyrinogen ox 99.5 8.6E-13 1.9E-17 122.6 19.7 218 1-251 159-398 (451)
14 TIGR02734 crtI_fam phytoene de 99.5 3.7E-12 8.1E-17 120.4 20.4 193 12-233 190-411 (502)
15 TIGR00562 proto_IX_ox protopor 99.5 3.4E-12 7.3E-17 119.3 19.7 219 1-252 155-406 (462)
16 PLN02576 protoporphyrinogen ox 99.4 7.7E-11 1.7E-15 111.2 20.5 226 1-250 164-430 (496)
17 KOG4254 Phytoene desaturase [C 99.3 9.2E-11 2E-15 106.6 16.2 193 33-243 251-471 (561)
18 PF01593 Amino_oxidase: Flavin 99.2 1.2E-10 2.6E-15 105.8 8.8 217 2-248 163-389 (450)
19 COG1233 Phytoene dehydrogenase 99.0 3.9E-09 8.6E-14 99.7 12.4 170 38-234 216-403 (487)
20 PLN03000 amine oxidase 98.6 1.2E-06 2.5E-11 87.2 14.8 170 39-247 374-557 (881)
21 PRK13977 myosin-cross-reactive 98.5 8.5E-07 1.8E-11 84.6 10.7 99 10-109 185-290 (576)
22 PLN02676 polyamine oxidase 98.4 4.4E-06 9.6E-11 79.1 13.5 174 42-245 220-407 (487)
23 PLN02268 probable polyamine ox 98.4 1.1E-05 2.5E-10 74.9 15.8 162 52-246 202-369 (435)
24 PLN02328 lysine-specific histo 98.4 1.7E-05 3.8E-10 78.7 17.2 172 38-249 429-614 (808)
25 PLN02529 lysine-specific histo 98.3 3.4E-05 7.5E-10 76.1 18.1 170 39-246 350-532 (738)
26 COG2907 Predicted NAD/FAD-bind 98.3 3E-06 6.4E-11 75.5 9.0 129 1-143 170-302 (447)
27 PLN02568 polyamine oxidase 98.3 1.9E-05 4.1E-10 75.7 14.3 96 41-149 237-339 (539)
28 KOG0029 Amine oxidase [Seconda 98.2 2.1E-05 4.6E-10 74.5 13.6 203 6-247 182-394 (501)
29 PLN02976 amine oxidase 98.2 3.1E-05 6.7E-10 80.3 14.9 174 40-246 930-1120(1713)
30 PTZ00363 rab-GDP dissociation 98.1 3.8E-05 8.2E-10 71.9 11.0 67 36-110 222-288 (443)
31 COG1231 Monoamine oxidase [Ami 98.0 0.00021 4.5E-09 66.0 14.5 171 52-250 210-385 (450)
32 KOG1276 Protoporphyrinogen oxi 97.6 0.00055 1.2E-08 62.8 10.6 214 2-238 175-427 (491)
33 KOG0685 Flavin-containing amin 97.5 0.00063 1.4E-08 63.1 10.0 79 62-149 244-326 (498)
34 PF01266 DAO: FAD dependent ox 97.4 0.00035 7.7E-09 62.1 6.8 57 47-112 147-203 (358)
35 PF06100 Strep_67kDa_ant: Stre 97.3 0.0037 8E-08 58.7 11.8 103 6-109 162-271 (500)
36 COG2081 Predicted flavoprotein 97.2 0.00097 2.1E-08 60.8 6.9 61 40-109 104-164 (408)
37 PF03486 HI0933_like: HI0933-l 97.2 0.0011 2.5E-08 61.4 7.1 65 39-111 101-165 (409)
38 COG2509 Uncharacterized FAD-de 97.1 0.0013 2.8E-08 60.8 7.1 55 48-110 174-228 (486)
39 TIGR03378 glycerol3P_GlpB glyc 97.0 0.0057 1.2E-07 56.8 9.7 64 47-118 263-328 (419)
40 COG3380 Predicted NAD/FAD-depe 96.9 0.001 2.2E-08 57.9 4.3 92 50-150 107-200 (331)
41 TIGR02352 thiamin_ThiO glycine 96.9 0.0032 7E-08 55.9 7.8 57 48-113 138-194 (337)
42 PF00890 FAD_binding_2: FAD bi 96.7 0.0074 1.6E-07 55.7 8.2 59 47-110 141-201 (417)
43 PRK00711 D-amino acid dehydrog 96.5 0.013 2.7E-07 54.0 8.2 56 48-112 202-257 (416)
44 PF00996 GDI: GDP dissociation 96.4 0.028 6.1E-07 52.6 10.3 81 18-107 201-284 (438)
45 COG0579 Predicted dehydrogenas 96.4 0.014 2.9E-07 54.4 7.7 63 48-118 154-219 (429)
46 TIGR03377 glycerol3P_GlpA glyc 96.2 0.021 4.5E-07 54.5 8.6 65 48-117 129-197 (516)
47 PRK06847 hypothetical protein; 96.1 0.31 6.7E-06 44.1 15.3 61 48-117 108-169 (375)
48 PRK06134 putative FAD-binding 96.1 0.024 5.2E-07 55.0 8.5 58 48-111 218-277 (581)
49 TIGR03862 flavo_PP4765 unchara 96.1 0.02 4.3E-07 52.6 7.4 64 39-112 78-141 (376)
50 PRK11101 glpA sn-glycerol-3-ph 96.1 0.032 6.9E-07 53.8 8.9 60 48-112 150-211 (546)
51 PRK07121 hypothetical protein; 96.0 0.028 6E-07 53.3 8.3 60 47-110 177-237 (492)
52 PRK08274 tricarballylate dehyd 96.0 0.031 6.7E-07 52.5 8.3 59 47-110 131-190 (466)
53 PRK12835 3-ketosteroid-delta-1 96.0 0.027 5.8E-07 54.7 8.0 57 47-109 213-272 (584)
54 TIGR02485 CobZ_N-term precorri 95.9 0.032 6.8E-07 52.0 8.1 58 48-110 124-181 (432)
55 PRK12844 3-ketosteroid-delta-1 95.9 0.029 6.4E-07 54.1 7.8 58 46-110 207-267 (557)
56 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.018 3.9E-07 52.6 5.7 55 48-112 136-190 (381)
57 PRK07843 3-ketosteroid-delta-1 95.7 0.042 9.2E-07 53.0 8.1 57 46-109 207-266 (557)
58 PRK06481 fumarate reductase fl 95.6 0.047 1E-06 52.1 8.0 56 48-109 191-248 (506)
59 PRK12842 putative succinate de 95.6 0.048 1E-06 52.9 8.2 58 47-110 214-273 (574)
60 PRK12845 3-ketosteroid-delta-1 95.6 0.048 1E-06 52.8 8.2 56 47-109 217-275 (564)
61 PRK12843 putative FAD-binding 95.6 0.043 9.4E-07 53.2 7.8 57 47-110 221-280 (578)
62 COG1252 Ndh NADH dehydrogenase 95.6 0.03 6.6E-07 51.7 6.4 59 45-116 207-269 (405)
63 TIGR01813 flavo_cyto_c flavocy 95.6 0.051 1.1E-06 50.6 8.0 58 48-110 131-190 (439)
64 TIGR01816 sdhA_forward succina 95.6 0.076 1.6E-06 51.4 9.3 60 46-110 118-179 (565)
65 PF13738 Pyr_redox_3: Pyridine 95.6 0.029 6.3E-07 46.1 5.7 56 47-111 82-137 (203)
66 PRK06175 L-aspartate oxidase; 95.6 0.083 1.8E-06 49.4 9.3 57 47-110 128-187 (433)
67 PRK07573 sdhA succinate dehydr 95.5 0.063 1.4E-06 52.8 8.5 55 51-110 174-230 (640)
68 PRK05329 anaerobic glycerol-3- 95.4 0.067 1.5E-06 49.9 8.2 62 48-117 260-323 (422)
69 PRK09078 sdhA succinate dehydr 95.4 0.085 1.9E-06 51.4 9.1 60 47-110 149-210 (598)
70 KOG1336 Monodehydroascorbate/f 95.4 0.035 7.6E-07 51.8 6.0 66 46-118 254-319 (478)
71 PTZ00383 malate:quinone oxidor 95.3 0.066 1.4E-06 51.0 7.9 56 48-112 212-273 (497)
72 TIGR01320 mal_quin_oxido malat 95.3 0.08 1.7E-06 50.2 8.5 65 48-117 179-247 (483)
73 TIGR00275 flavoprotein, HI0933 95.3 0.076 1.6E-06 49.1 8.0 61 41-111 99-159 (400)
74 PRK11728 hydroxyglutarate oxid 95.2 0.076 1.7E-06 48.7 7.8 60 48-117 150-211 (393)
75 TIGR01812 sdhA_frdA_Gneg succi 95.2 0.1 2.2E-06 50.4 8.9 59 48-111 130-190 (566)
76 PRK05675 sdhA succinate dehydr 95.2 0.12 2.6E-06 50.1 9.2 61 46-110 125-187 (570)
77 PLN02464 glycerol-3-phosphate 95.1 0.11 2.3E-06 51.1 8.7 66 48-117 233-303 (627)
78 PF00070 Pyr_redox: Pyridine n 95.1 0.074 1.6E-06 37.3 5.7 41 45-91 38-78 (80)
79 PRK12839 hypothetical protein; 95.0 0.11 2.4E-06 50.4 8.6 59 47-110 214-274 (572)
80 TIGR01811 sdhA_Bsu succinate d 95.0 0.13 2.9E-06 50.2 9.1 61 46-110 128-194 (603)
81 TIGR01373 soxB sarcosine oxida 95.0 0.11 2.4E-06 47.7 8.2 62 48-117 184-247 (407)
82 PRK06452 sdhA succinate dehydr 94.9 0.14 3E-06 49.6 8.8 61 47-112 136-198 (566)
83 TIGR03329 Phn_aa_oxid putative 94.8 0.1 2.2E-06 49.0 7.5 54 48-112 184-237 (460)
84 PRK13369 glycerol-3-phosphate 94.8 2.1 4.5E-05 40.8 16.5 58 48-112 156-215 (502)
85 PRK07057 sdhA succinate dehydr 94.7 0.2 4.3E-06 48.8 9.5 60 47-110 148-209 (591)
86 PRK04176 ribulose-1,5-biphosph 94.7 0.13 2.9E-06 44.6 7.5 61 48-112 105-173 (257)
87 PRK05945 sdhA succinate dehydr 94.7 0.17 3.7E-06 49.1 8.9 60 47-111 135-196 (575)
88 PTZ00318 NADH dehydrogenase-li 94.6 0.094 2E-06 48.8 6.8 53 45-110 226-278 (424)
89 TIGR01377 soxA_mon sarcosine o 94.6 0.13 2.9E-06 46.5 7.6 54 48-111 146-199 (380)
90 PRK12837 3-ketosteroid-delta-1 94.6 0.15 3.2E-06 48.8 8.1 56 48-110 174-233 (513)
91 PRK07333 2-octaprenyl-6-methox 94.6 0.15 3.3E-06 46.5 7.9 62 48-118 112-174 (403)
92 PRK08275 putative oxidoreducta 94.5 0.17 3.7E-06 48.8 8.5 60 48-111 138-199 (554)
93 PRK14989 nitrite reductase sub 94.5 0.13 2.8E-06 52.2 7.9 58 47-111 187-244 (847)
94 PTZ00139 Succinate dehydrogena 94.5 0.23 5E-06 48.6 9.4 60 47-110 166-227 (617)
95 PRK05257 malate:quinone oxidor 94.5 0.17 3.6E-06 48.2 8.2 60 48-112 184-246 (494)
96 TIGR02374 nitri_red_nirB nitri 94.5 0.12 2.6E-06 52.1 7.5 55 48-111 183-237 (785)
97 PRK08958 sdhA succinate dehydr 94.5 0.23 4.9E-06 48.4 9.2 61 46-110 142-204 (588)
98 PRK06263 sdhA succinate dehydr 94.5 0.17 3.7E-06 48.7 8.3 61 47-111 134-196 (543)
99 PRK04965 NADH:flavorubredoxin 94.5 0.15 3.3E-06 46.4 7.7 55 48-111 184-238 (377)
100 PF00732 GMC_oxred_N: GMC oxid 94.4 0.14 3E-06 44.9 7.0 61 53-116 199-262 (296)
101 PRK06116 glutathione reductase 94.3 0.17 3.7E-06 47.3 7.8 56 47-110 208-263 (450)
102 PRK08773 2-octaprenyl-3-methyl 94.3 0.17 3.7E-06 46.2 7.6 62 48-118 114-176 (392)
103 TIGR02032 GG-red-SF geranylger 94.2 0.22 4.9E-06 42.9 7.9 63 48-118 92-155 (295)
104 PRK08205 sdhA succinate dehydr 94.2 0.23 4.9E-06 48.3 8.5 63 47-111 140-205 (583)
105 PRK05714 2-octaprenyl-3-methyl 94.2 0.18 4E-06 46.2 7.5 63 48-119 113-176 (405)
106 PRK12409 D-amino acid dehydrog 94.1 0.22 4.7E-06 45.9 7.9 58 48-112 198-258 (410)
107 PRK09564 coenzyme A disulfide 94.1 0.19 4.2E-06 46.7 7.7 57 45-111 189-245 (444)
108 PRK11259 solA N-methyltryptoph 94.1 0.18 3.8E-06 45.6 7.1 55 48-112 150-204 (376)
109 PLN00128 Succinate dehydrogena 94.0 0.26 5.6E-06 48.5 8.6 60 47-110 187-248 (635)
110 PRK10157 putative oxidoreducta 94.0 0.21 4.6E-06 46.5 7.7 59 48-115 109-168 (428)
111 PF01134 GIDA: Glucose inhibit 93.9 0.21 4.5E-06 46.1 7.1 54 48-110 96-150 (392)
112 TIGR01984 UbiH 2-polyprenyl-6- 93.8 0.23 4.9E-06 45.1 7.4 62 48-118 106-169 (382)
113 PLN02507 glutathione reductase 93.8 0.23 5E-06 47.3 7.6 57 46-111 243-299 (499)
114 PRK06834 hypothetical protein; 93.8 0.23 5E-06 47.2 7.5 62 48-118 101-163 (488)
115 TIGR00292 thiazole biosynthesi 93.8 0.3 6.6E-06 42.3 7.7 67 48-117 101-176 (254)
116 TIGR01423 trypano_reduc trypan 93.7 0.23 5E-06 47.2 7.5 58 46-111 230-287 (486)
117 PRK07512 L-aspartate oxidase; 93.7 0.19 4.1E-06 48.0 7.0 58 47-110 136-195 (513)
118 COG0654 UbiH 2-polyprenyl-6-me 93.7 1.1 2.4E-05 41.0 11.7 63 48-118 105-169 (387)
119 PRK10015 oxidoreductase; Provi 93.7 0.34 7.5E-06 45.2 8.4 55 49-112 110-164 (429)
120 TIGR01988 Ubi-OHases Ubiquinon 93.6 0.28 6E-06 44.3 7.5 62 48-118 107-170 (385)
121 PRK05249 soluble pyridine nucl 93.6 0.24 5.2E-06 46.4 7.3 57 46-111 215-271 (461)
122 TIGR00551 nadB L-aspartate oxi 93.5 0.29 6.3E-06 46.4 7.8 60 47-112 128-189 (488)
123 PRK08626 fumarate reductase fl 93.5 0.31 6.8E-06 48.1 8.2 58 48-110 159-218 (657)
124 PRK06854 adenylylsulfate reduc 93.4 0.36 7.7E-06 47.2 8.3 59 48-111 133-194 (608)
125 PRK06184 hypothetical protein; 93.4 0.44 9.5E-06 45.2 8.8 64 49-118 111-175 (502)
126 PRK13339 malate:quinone oxidor 93.4 0.41 8.8E-06 45.7 8.4 60 48-112 185-247 (497)
127 PRK06416 dihydrolipoamide dehy 93.4 0.31 6.7E-06 45.7 7.6 57 47-112 213-272 (462)
128 PRK08401 L-aspartate oxidase; 93.3 0.3 6.5E-06 46.1 7.5 56 46-111 119-174 (466)
129 TIGR01421 gluta_reduc_1 glutat 93.3 0.34 7.3E-06 45.5 7.8 59 46-112 206-265 (450)
130 TIGR01350 lipoamide_DH dihydro 93.3 0.36 7.9E-06 45.1 8.0 56 47-111 211-268 (461)
131 PRK01747 mnmC bifunctional tRN 93.3 0.2 4.4E-06 49.4 6.5 55 48-112 409-463 (662)
132 TIGR03385 CoA_CoA_reduc CoA-di 93.3 0.28 6.1E-06 45.4 7.2 54 47-111 179-232 (427)
133 PRK09754 phenylpropionate diox 93.2 0.31 6.8E-06 44.8 7.3 54 48-111 187-240 (396)
134 PRK12266 glpD glycerol-3-phosp 93.2 0.44 9.5E-06 45.5 8.5 59 48-112 156-216 (508)
135 PRK07395 L-aspartate oxidase; 93.2 0.42 9E-06 46.2 8.3 60 46-110 133-195 (553)
136 PRK07804 L-aspartate oxidase; 93.1 0.37 7.9E-06 46.4 7.9 61 47-111 144-209 (541)
137 TIGR01424 gluta_reduc_2 glutat 93.1 0.33 7.2E-06 45.4 7.4 56 47-111 207-262 (446)
138 PF13454 NAD_binding_9: FAD-NA 93.1 0.4 8.6E-06 38.2 6.9 56 46-110 97-155 (156)
139 TIGR02053 MerA mercuric reduct 93.1 0.41 8.9E-06 44.9 8.0 59 47-111 207-265 (463)
140 PRK06370 mercuric reductase; V 93.0 0.44 9.6E-06 44.7 8.1 58 48-111 213-270 (463)
141 PRK12834 putative FAD-binding 93.0 0.4 8.6E-06 46.2 7.9 57 48-109 149-224 (549)
142 PRK07190 hypothetical protein; 93.0 0.43 9.3E-06 45.4 8.0 61 49-118 111-172 (487)
143 PRK07845 flavoprotein disulfid 92.8 0.37 8E-06 45.4 7.2 55 48-111 219-273 (466)
144 PRK07803 sdhA succinate dehydr 92.7 0.59 1.3E-05 45.9 8.7 59 47-110 138-211 (626)
145 PF04820 Trp_halogenase: Trypt 92.4 0.48 1E-05 44.6 7.4 57 48-112 155-211 (454)
146 PRK06185 hypothetical protein; 92.4 0.79 1.7E-05 42.0 8.8 65 48-118 109-176 (407)
147 PRK06069 sdhA succinate dehydr 92.4 0.69 1.5E-05 44.9 8.7 59 48-111 138-199 (577)
148 TIGR03169 Nterm_to_SelD pyridi 92.4 0.37 8.1E-06 43.5 6.5 52 47-111 191-242 (364)
149 PRK08020 ubiF 2-octaprenyl-3-m 92.3 0.53 1.2E-05 42.9 7.5 62 48-118 113-176 (391)
150 PTZ00052 thioredoxin reductase 92.3 0.5 1.1E-05 45.0 7.5 58 46-112 221-278 (499)
151 PRK05976 dihydrolipoamide dehy 92.1 0.61 1.3E-05 43.9 7.8 58 47-111 221-280 (472)
152 PRK07045 putative monooxygenas 92.1 0.65 1.4E-05 42.3 7.7 62 48-116 107-170 (388)
153 PRK06115 dihydrolipoamide dehy 92.0 0.71 1.5E-05 43.5 8.1 58 48-111 216-275 (466)
154 TIGR01292 TRX_reduct thioredox 92.0 0.59 1.3E-05 40.5 7.1 55 47-111 57-111 (300)
155 PRK10262 thioredoxin reductase 91.7 0.46 9.9E-06 42.2 6.1 59 48-111 186-247 (321)
156 PRK14694 putative mercuric red 91.7 0.67 1.4E-05 43.7 7.5 55 47-111 218-272 (468)
157 PRK07818 dihydrolipoamide dehy 91.6 0.81 1.8E-05 43.0 8.0 57 48-111 214-272 (466)
158 PF07156 Prenylcys_lyase: Pren 91.5 0.63 1.4E-05 42.7 6.9 66 38-112 121-187 (368)
159 PRK07608 ubiquinone biosynthes 91.3 0.75 1.6E-05 41.7 7.3 61 48-118 112-174 (388)
160 PF06039 Mqo: Malate:quinone o 91.3 1.1 2.3E-05 42.2 8.2 62 48-114 182-246 (488)
161 TIGR01438 TGR thioredoxin and 91.2 0.84 1.8E-05 43.3 7.7 60 46-111 219-278 (484)
162 TIGR01316 gltA glutamate synth 91.2 2.9 6.2E-05 39.3 11.2 56 51-110 313-385 (449)
163 TIGR01292 TRX_reduct thioredox 91.2 0.96 2.1E-05 39.1 7.6 56 50-111 179-237 (300)
164 PRK07588 hypothetical protein; 91.1 0.67 1.4E-05 42.3 6.8 59 49-117 105-164 (391)
165 PRK09897 hypothetical protein; 91.1 0.88 1.9E-05 43.8 7.7 54 49-110 109-164 (534)
166 COG1251 NirB NAD(P)H-nitrite r 91.1 0.23 4.9E-06 49.0 3.7 52 50-110 190-241 (793)
167 COG1249 Lpd Pyruvate/2-oxoglut 91.1 0.85 1.9E-05 43.0 7.5 63 45-116 212-277 (454)
168 PRK08641 sdhA succinate dehydr 91.0 1.1 2.4E-05 43.7 8.4 61 46-110 132-198 (589)
169 PRK06327 dihydrolipoamide dehy 91.0 0.91 2E-05 42.8 7.8 58 47-111 224-283 (475)
170 PRK13512 coenzyme A disulfide 91.0 0.64 1.4E-05 43.4 6.6 52 47-111 189-240 (438)
171 PRK08071 L-aspartate oxidase; 91.0 0.62 1.4E-05 44.5 6.6 56 48-110 131-188 (510)
172 COG0578 GlpA Glycerol-3-phosph 91.0 0.95 2.1E-05 43.4 7.7 64 48-117 165-232 (532)
173 TIGR03364 HpnW_proposed FAD de 91.0 0.65 1.4E-05 41.9 6.5 56 48-118 146-202 (365)
174 PRK09077 L-aspartate oxidase; 91.0 1.4 3E-05 42.4 9.0 63 47-111 138-206 (536)
175 PRK09126 hypothetical protein; 90.9 0.91 2E-05 41.3 7.4 60 49-117 112-173 (392)
176 PRK08163 salicylate hydroxylas 90.8 1 2.2E-05 41.0 7.7 60 49-117 111-172 (396)
177 KOG2820 FAD-dependent oxidored 90.7 0.94 2E-05 40.9 6.9 66 47-119 153-218 (399)
178 PRK06912 acoL dihydrolipoamide 90.7 0.99 2.1E-05 42.4 7.6 54 48-111 212-267 (458)
179 TIGR01176 fum_red_Fp fumarate 90.6 1.4 3.1E-05 42.8 8.8 59 47-110 132-193 (580)
180 PRK06475 salicylate hydroxylas 90.6 1.4 3E-05 40.4 8.4 65 48-118 108-174 (400)
181 PF01494 FAD_binding_3: FAD bi 90.6 0.99 2.1E-05 39.8 7.2 66 48-119 112-180 (356)
182 PTZ00058 glutathione reductase 90.5 1.1 2.4E-05 43.4 7.9 59 46-111 277-335 (561)
183 COG0644 FixC Dehydrogenases (f 90.4 1.2 2.6E-05 40.9 7.9 63 48-118 96-159 (396)
184 PF12831 FAD_oxidored: FAD dep 90.4 0.08 1.7E-06 49.4 0.0 65 49-118 92-156 (428)
185 PRK08244 hypothetical protein; 90.4 1.4 3.1E-05 41.7 8.5 64 48-118 101-166 (493)
186 PRK09231 fumarate reductase fl 90.4 1.3 2.7E-05 43.2 8.2 59 48-111 134-195 (582)
187 PRK07251 pyridine nucleotide-d 90.3 1.3 2.9E-05 41.2 8.1 54 48-111 199-252 (438)
188 PLN02815 L-aspartate oxidase 90.3 1.1 2.3E-05 43.9 7.6 63 47-110 155-220 (594)
189 TIGR02462 pyranose_ox pyranose 90.3 0.96 2.1E-05 43.7 7.2 67 49-118 216-286 (544)
190 PRK08850 2-octaprenyl-6-methox 90.2 1.1 2.3E-05 41.2 7.3 61 49-118 113-175 (405)
191 PRK14727 putative mercuric red 90.1 1.2 2.5E-05 42.2 7.6 56 47-112 228-283 (479)
192 TIGR03140 AhpF alkyl hydropero 90.1 1.2 2.6E-05 42.6 7.7 55 48-111 268-322 (515)
193 PRK11749 dihydropyrimidine deh 89.9 1.4 3.1E-05 41.3 8.0 56 51-111 315-386 (457)
194 PRK08013 oxidoreductase; Provi 89.8 1.2 2.6E-05 40.9 7.2 62 48-118 112-175 (400)
195 PRK07364 2-octaprenyl-6-methox 89.6 1.3 2.8E-05 40.6 7.3 65 48-118 122-188 (415)
196 PRK08010 pyridine nucleotide-d 89.5 1.3 2.9E-05 41.2 7.4 55 47-111 199-253 (441)
197 PTZ00306 NADH-dependent fumara 89.5 1.3 2.7E-05 46.8 7.9 63 48-110 545-618 (1167)
198 PRK05732 2-octaprenyl-6-methox 89.4 1.5 3.3E-05 39.8 7.6 61 49-118 114-176 (395)
199 TIGR01810 betA choline dehydro 89.4 0.81 1.7E-05 43.9 6.0 46 58-110 205-253 (532)
200 PRK08849 2-octaprenyl-3-methyl 89.4 1.3 2.8E-05 40.4 7.1 60 50-118 113-174 (384)
201 PRK07494 2-octaprenyl-6-methox 89.4 1.3 2.8E-05 40.3 7.0 62 48-118 112-174 (388)
202 PRK12810 gltD glutamate syntha 89.0 1.6 3.5E-05 41.2 7.6 53 53-110 335-398 (471)
203 TIGR01318 gltD_gamma_fam gluta 88.9 2.1 4.6E-05 40.4 8.3 55 52-110 325-396 (467)
204 PLN02697 lycopene epsilon cycl 88.7 1.8 3.8E-05 41.7 7.7 56 48-112 193-248 (529)
205 COG0446 HcaD Uncharacterized N 88.6 1.5 3.2E-05 39.7 6.9 56 47-110 178-235 (415)
206 PRK06126 hypothetical protein; 88.5 2.2 4.8E-05 40.9 8.3 64 49-118 128-195 (545)
207 PRK15317 alkyl hydroperoxide r 88.5 1.9 4.2E-05 41.2 7.8 55 48-111 267-321 (517)
208 PRK05192 tRNA uridine 5-carbox 88.5 1.4 3.1E-05 43.0 6.9 54 48-110 101-155 (618)
209 PRK13748 putative mercuric red 88.4 1.8 3.9E-05 41.7 7.6 55 47-111 310-364 (561)
210 TIGR01372 soxA sarcosine oxida 88.4 3.5 7.6E-05 42.8 10.1 57 49-111 353-410 (985)
211 PRK08243 4-hydroxybenzoate 3-m 88.0 2 4.3E-05 39.3 7.4 65 48-119 104-171 (392)
212 PLN02546 glutathione reductase 88.0 1.9 4.2E-05 41.7 7.6 59 46-112 292-350 (558)
213 PRK12769 putative oxidoreducta 88.0 2.3 4.9E-05 42.0 8.2 56 51-110 510-582 (654)
214 TIGR00136 gidA glucose-inhibit 87.8 1.8 3.8E-05 42.4 7.1 56 48-111 97-153 (617)
215 KOG0404 Thioredoxin reductase 87.6 0.99 2.1E-05 38.7 4.6 72 38-120 61-132 (322)
216 TIGR01790 carotene-cycl lycope 87.6 2.1 4.6E-05 38.9 7.2 57 47-112 85-141 (388)
217 KOG1439 RAB proteins geranylge 87.4 3.8 8.3E-05 37.8 8.5 66 35-109 221-286 (440)
218 PRK05868 hypothetical protein; 87.3 1.9 4E-05 39.4 6.7 50 59-117 116-166 (372)
219 KOG1335 Dihydrolipoamide dehyd 87.3 2.7 6E-05 38.7 7.5 63 43-110 248-312 (506)
220 COG0665 DadA Glycine/D-amino a 87.2 2.4 5.3E-05 38.2 7.4 55 48-112 157-212 (387)
221 PLN02463 lycopene beta cyclase 87.2 2.1 4.7E-05 40.2 7.2 55 48-112 115-169 (447)
222 PRK12831 putative oxidoreducta 87.1 2.6 5.6E-05 39.8 7.7 53 55-111 326-395 (464)
223 TIGR03140 AhpF alkyl hydropero 87.0 1.8 4E-05 41.3 6.7 56 51-111 391-449 (515)
224 PRK06996 hypothetical protein; 86.8 2.2 4.7E-05 39.1 6.9 63 48-117 116-181 (398)
225 TIGR02061 aprA adenosine phosp 86.7 3.5 7.6E-05 40.5 8.5 62 48-111 127-190 (614)
226 COG3075 GlpB Anaerobic glycero 86.6 3.3 7.1E-05 37.5 7.5 74 37-118 245-323 (421)
227 KOG2844 Dimethylglycine dehydr 86.0 1.4 3.1E-05 43.2 5.3 56 48-112 188-243 (856)
228 PRK12770 putative glutamate sy 86.0 3 6.5E-05 37.6 7.3 55 51-111 214-285 (352)
229 PRK08132 FAD-dependent oxidore 85.9 3.7 8.1E-05 39.4 8.3 64 49-119 127-193 (547)
230 TIGR03219 salicylate_mono sali 85.8 1.9 4.1E-05 39.7 6.0 58 49-117 107-165 (414)
231 TIGR03452 mycothione_red mycot 85.7 3 6.4E-05 39.2 7.3 55 48-112 211-265 (452)
232 PRK06183 mhpA 3-(3-hydroxyphen 85.1 3.7 8E-05 39.4 7.8 63 50-119 116-182 (538)
233 TIGR02374 nitri_red_nirB nitri 84.7 1.4 3.1E-05 44.4 5.0 50 52-112 59-108 (785)
234 PRK06617 2-octaprenyl-6-methox 84.5 4.3 9.4E-05 36.8 7.7 61 48-118 105-167 (374)
235 PRK07538 hypothetical protein; 84.5 4.2 9.1E-05 37.4 7.6 65 49-117 104-171 (413)
236 TIGR01989 COQ6 Ubiquinone bios 84.4 4 8.6E-05 38.0 7.5 66 48-118 118-190 (437)
237 PRK09754 phenylpropionate diox 84.2 2.7 5.8E-05 38.6 6.1 46 55-111 66-111 (396)
238 PRK07846 mycothione reductase; 84.2 3.6 7.8E-05 38.6 7.1 55 48-112 208-262 (451)
239 PRK15317 alkyl hydroperoxide r 84.2 3.4 7.4E-05 39.5 7.1 56 51-111 390-448 (517)
240 PF05834 Lycopene_cycl: Lycope 83.7 3 6.5E-05 38.0 6.3 54 48-111 88-141 (374)
241 PRK07236 hypothetical protein; 82.8 4.2 9E-05 37.0 6.8 48 61-117 112-160 (386)
242 PRK06753 hypothetical protein; 82.3 3.9 8.4E-05 36.8 6.4 58 50-118 101-159 (373)
243 PLN02172 flavin-containing mon 82.3 4.9 0.00011 38.0 7.2 58 47-111 111-172 (461)
244 PRK12809 putative oxidoreducta 82.2 4.4 9.6E-05 39.9 7.1 52 55-110 497-565 (639)
245 PRK04965 NADH:flavorubredoxin 82.1 4.4 9.5E-05 36.8 6.7 47 53-111 64-110 (377)
246 TIGR03169 Nterm_to_SelD pyridi 82.1 2 4.4E-05 38.7 4.4 51 49-111 56-106 (364)
247 PLN02661 Putative thiazole syn 81.6 6.1 0.00013 36.1 7.2 58 48-110 173-242 (357)
248 PRK09564 coenzyme A disulfide 81.5 3.6 7.8E-05 38.2 6.0 53 51-111 60-114 (444)
249 PRK13800 putative oxidoreducta 80.9 6.9 0.00015 40.2 8.2 60 46-110 138-203 (897)
250 PF07992 Pyr_redox_2: Pyridine 80.8 3.3 7.2E-05 33.5 4.9 55 52-111 63-121 (201)
251 PRK12778 putative bifunctional 80.5 6.1 0.00013 39.6 7.6 53 55-111 616-685 (752)
252 PRK06467 dihydrolipoamide dehy 80.0 7.3 0.00016 36.8 7.5 59 47-112 215-274 (471)
253 TIGR03385 CoA_CoA_reduc CoA-di 79.8 6.1 0.00013 36.5 6.9 50 54-111 51-102 (427)
254 PRK12775 putative trifunctiona 79.6 7 0.00015 40.7 7.8 53 54-110 616-684 (1006)
255 PRK11445 putative oxidoreducta 79.2 8.7 0.00019 34.6 7.5 59 51-118 103-164 (351)
256 PRK02106 choline dehydrogenase 79.2 3.9 8.4E-05 39.5 5.5 46 59-110 213-260 (560)
257 PRK13984 putative oxidoreducta 79.1 6.9 0.00015 38.1 7.3 50 57-111 472-537 (604)
258 PRK06292 dihydrolipoamide dehy 77.3 7.4 0.00016 36.4 6.7 57 47-111 210-267 (460)
259 PRK14989 nitrite reductase sub 77.1 4.1 8.9E-05 41.6 5.1 48 53-111 65-112 (847)
260 PTZ00153 lipoamide dehydrogena 76.6 12 0.00025 37.2 8.0 60 48-111 354-426 (659)
261 KOG1346 Programmed cell death 76.2 3 6.5E-05 38.9 3.5 55 48-111 394-448 (659)
262 PRK12771 putative glutamate sy 76.2 11 0.00023 36.5 7.6 53 54-111 312-379 (564)
263 KOG2404 Fumarate reductase, fl 76.1 7.1 0.00015 35.4 5.7 58 48-111 140-205 (477)
264 TIGR00031 UDP-GALP_mutase UDP- 75.7 2 4.3E-05 39.6 2.3 88 11-115 160-250 (377)
265 TIGR02023 BchP-ChlP geranylger 75.5 14 0.0003 33.7 7.8 63 48-117 93-161 (388)
266 TIGR02360 pbenz_hydroxyl 4-hyd 75.3 13 0.00029 33.9 7.7 65 48-119 104-171 (390)
267 COG0492 TrxB Thioredoxin reduc 72.4 12 0.00026 33.4 6.4 64 38-112 52-115 (305)
268 KOG1336 Monodehydroascorbate/f 70.4 8 0.00017 36.5 4.9 51 49-110 129-179 (478)
269 COG0445 GidA Flavin-dependent 70.2 5.6 0.00012 38.4 3.9 56 48-110 101-156 (621)
270 KOG0405 Pyridine nucleotide-di 69.1 12 0.00026 34.3 5.5 65 44-116 227-292 (478)
271 COG4716 Myosin-crossreactive a 67.6 9.1 0.0002 35.4 4.5 32 47-78 227-258 (587)
272 PF13434 K_oxygenase: L-lysine 65.9 13 0.00028 33.6 5.3 44 62-110 294-339 (341)
273 PRK13512 coenzyme A disulfide 65.8 20 0.00042 33.5 6.7 49 55-111 66-116 (438)
274 PLN02985 squalene monooxygenas 65.6 37 0.00081 32.5 8.6 64 48-118 148-215 (514)
275 COG1635 THI4 Ribulose 1,5-bisp 65.5 30 0.00066 29.7 7.0 61 48-112 110-178 (262)
276 COG1251 NirB NAD(P)H-nitrite r 64.9 13 0.00028 37.1 5.3 62 49-121 61-122 (793)
277 COG5044 MRS6 RAB proteins gera 64.3 15 0.00033 33.8 5.3 82 18-110 198-282 (434)
278 COG3573 Predicted oxidoreducta 64.0 12 0.00026 34.1 4.5 57 48-109 150-225 (552)
279 PRK12779 putative bifunctional 63.6 31 0.00066 35.8 8.0 51 57-110 494-560 (944)
280 TIGR02028 ChlP geranylgeranyl 63.5 40 0.00087 30.9 8.2 67 48-118 94-167 (398)
281 PF00743 FMO-like: Flavin-bind 63.1 13 0.00027 35.9 4.9 64 47-113 84-151 (531)
282 PLN00093 geranylgeranyl diphos 62.3 41 0.00088 31.7 8.1 67 48-118 133-206 (450)
283 PRK08294 phenol 2-monooxygenas 61.7 39 0.00085 33.3 8.2 67 49-118 143-217 (634)
284 COG2072 TrkA Predicted flavopr 61.5 32 0.0007 32.3 7.3 55 49-110 84-142 (443)
285 COG2303 BetA Choline dehydroge 59.8 19 0.00041 34.8 5.5 50 56-110 212-264 (542)
286 COG3486 IucD Lysine/ornithine 59.8 17 0.00036 33.9 4.8 51 62-117 293-346 (436)
287 PTZ00318 NADH dehydrogenase-li 59.6 22 0.00047 33.0 5.7 55 48-111 63-124 (424)
288 KOG0042 Glycerol-3-phosphate d 59.4 1.1E+02 0.0025 29.8 10.3 98 38-149 214-316 (680)
289 TIGR03143 AhpF_homolog putativ 59.2 34 0.00074 33.1 7.2 53 48-111 61-113 (555)
290 PF01946 Thi4: Thi4 family; PD 58.7 54 0.0012 28.0 7.3 60 49-112 98-165 (230)
291 PLN02927 antheraxanthin epoxid 56.8 28 0.00061 34.6 6.2 51 60-119 204-257 (668)
292 COG0029 NadB Aspartate oxidase 56.4 40 0.00087 32.2 6.8 67 38-109 124-193 (518)
293 TIGR01424 gluta_reduc_2 glutat 55.2 31 0.00067 32.2 6.0 50 49-111 92-141 (446)
294 PRK12814 putative NADPH-depend 52.9 51 0.0011 32.6 7.3 52 57-111 371-436 (652)
295 TIGR01789 lycopene_cycl lycope 50.6 28 0.00061 31.7 4.8 38 61-111 100-137 (370)
296 PF13434 K_oxygenase: L-lysine 49.8 23 0.00049 32.1 4.0 62 47-110 95-157 (341)
297 PF03197 FRD2: Bacteriophage F 49.5 52 0.0011 24.1 5.0 40 53-102 2-41 (102)
298 COG0492 TrxB Thioredoxin reduc 49.2 46 0.00099 29.7 5.8 65 38-111 171-237 (305)
299 TIGR03143 AhpF_homolog putativ 48.9 62 0.0014 31.2 7.1 52 53-110 184-244 (555)
300 TIGR01317 GOGAT_sm_gam glutama 48.7 56 0.0012 31.0 6.7 50 57-110 346-412 (485)
301 KOG2852 Possible oxidoreductas 46.6 39 0.00083 30.3 4.7 60 48-113 148-209 (380)
302 PLN02785 Protein HOTHEAD 46.3 60 0.0013 31.7 6.6 56 53-110 226-288 (587)
303 PRK06116 glutathione reductase 45.8 42 0.00091 31.2 5.3 47 50-111 96-142 (450)
304 PRK06416 dihydrolipoamide dehy 45.0 53 0.0012 30.6 5.9 50 51-111 96-145 (462)
305 PRK10262 thioredoxin reductase 43.6 1.1E+02 0.0023 27.0 7.3 53 48-111 64-116 (321)
306 PRK07845 flavoprotein disulfid 42.4 70 0.0015 30.1 6.2 52 50-111 95-150 (466)
307 PRK12779 putative bifunctional 41.8 25 0.00054 36.5 3.3 57 38-111 347-403 (944)
308 PLN02546 glutathione reductase 40.9 63 0.0014 31.4 5.8 48 49-111 180-227 (558)
309 PRK09853 putative selenate red 40.4 83 0.0018 33.0 6.7 48 58-111 718-778 (1019)
310 TIGR01421 gluta_reduc_1 glutat 38.5 70 0.0015 29.9 5.6 47 50-111 94-140 (450)
311 KOG2415 Electron transfer flav 38.0 46 0.001 31.4 4.0 59 48-110 184-254 (621)
312 PRK05976 dihydrolipoamide dehy 37.8 86 0.0019 29.4 6.1 53 52-111 97-153 (472)
313 PRK06567 putative bifunctional 35.8 1.1E+02 0.0023 32.1 6.6 52 55-110 648-726 (1028)
314 PRK05249 soluble pyridine nucl 34.8 1E+02 0.0022 28.7 6.1 49 51-111 98-148 (461)
315 PTZ00367 squalene epoxidase; P 34.1 1.3E+02 0.0028 29.3 6.8 65 49-117 133-225 (567)
316 PLN02507 glutathione reductase 33.5 1.2E+02 0.0025 29.0 6.2 47 53-111 130-178 (499)
317 KOG2311 NAD/FAD-utilizing prot 32.3 63 0.0014 31.0 4.0 58 49-110 126-184 (679)
318 PRK09853 putative selenate red 30.7 95 0.0021 32.6 5.4 45 48-111 590-634 (1019)
319 PRK06370 mercuric reductase; V 28.8 1.2E+02 0.0026 28.3 5.5 45 52-111 99-144 (463)
320 PRK06327 dihydrolipoamide dehy 28.3 1.7E+02 0.0037 27.5 6.4 52 52-111 105-156 (475)
321 PRK06467 dihydrolipoamide dehy 28.3 1.4E+02 0.003 28.1 5.8 46 54-111 100-147 (471)
322 KOG4716 Thioredoxin reductase 27.9 1.1E+02 0.0024 28.2 4.6 68 44-116 235-305 (503)
323 PRK12778 putative bifunctional 27.4 40 0.00087 33.9 2.1 57 38-111 472-528 (752)
324 PLN02852 ferredoxin-NADP+ redu 26.9 2.7E+02 0.0059 26.6 7.5 50 60-111 288-353 (491)
325 PF10354 DUF2431: Domain of un 24.4 82 0.0018 25.3 3.0 45 51-112 43-87 (166)
326 TIGR03315 Se_ygfK putative sel 23.8 3.1E+02 0.0068 28.9 7.7 52 52-111 711-775 (1012)
327 KOG4405 GDP dissociation inhib 23.4 2.5E+02 0.0055 26.5 6.2 87 14-107 251-340 (547)
328 COG1053 SdhA Succinate dehydro 23.0 1.8E+02 0.004 28.3 5.6 63 46-112 137-202 (562)
329 COG1252 Ndh NADH dehydrogenase 22.9 1E+02 0.0023 28.7 3.7 53 48-112 58-111 (405)
330 PRK11749 dihydropyrimidine deh 22.8 75 0.0016 29.7 2.9 48 46-111 189-236 (457)
331 COG3634 AhpF Alkyl hydroperoxi 22.4 1.5E+02 0.0032 27.5 4.4 57 48-110 267-323 (520)
332 PLN02172 flavin-containing mon 22.0 89 0.0019 29.5 3.2 28 88-118 267-294 (461)
333 COG1445 FrwB Phosphotransferas 21.9 64 0.0014 24.8 1.8 48 50-112 21-68 (122)
334 TIGR01317 GOGAT_sm_gam glutama 20.6 78 0.0017 30.0 2.5 24 48-71 194-217 (485)
335 PRK08818 prephenate dehydrogen 20.4 74 0.0016 29.2 2.2 63 37-119 6-70 (370)
336 TIGR01316 gltA glutamate synth 20.2 58 0.0013 30.5 1.5 49 44-110 180-228 (449)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=3e-34 Score=272.72 Aligned_cols=251 Identities=77% Similarity=1.267 Sum_probs=202.2
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (254)
||+|+|++++|.+++++||++++.+|..|..+.++++++|++|++++.|+++++++|+++||+|+++++|++|+.+++.+
T Consensus 249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~ 328 (569)
T PLN02487 249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPD 328 (569)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCC
Confidence 69999999999999999999999999776656667899999999998899999999999999999999999999974211
Q ss_pred CcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHH
Q 025358 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (254)
Q Consensus 81 g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (254)
|..+++||++.++.+++.+.||+||+|+|++.+.+|+|+.+...+.++++.+|++.||++|||+||++++.....+..++
T Consensus 329 g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~ 408 (569)
T PLN02487 329 GETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQ 408 (569)
T ss_pred CceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEeccccccccccccccc
Confidence 21147899884223566789999999999999999999876656678999999999999999999998864332211111
Q ss_pred hhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCCcceee
Q 025358 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSISIIPRF 238 (254)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~ 238 (254)
+......++++|..+..+++|.+++++++++++.++++++++++++++++++++++|+|+++++++|. ||.+ +.+++
T Consensus 409 l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~-~~~~v 487 (569)
T PLN02487 409 LRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSS-RGLEV 487 (569)
T ss_pred ccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCccc-ccCce
Confidence 11011234544666666667777666666444444456899999999999999999999999999998 9998 55688
Q ss_pred eeeeEEeeeCceeec
Q 025358 239 RSYLVVCCQNRAIFV 253 (254)
Q Consensus 239 ~~~~v~~~~~~a~~~ 253 (254)
.+++||| +++|||-
T Consensus 488 ~~~~vv~-~~~at~~ 501 (569)
T PLN02487 488 TWSSVVK-IGQSLYR 501 (569)
T ss_pred EEEEEEE-ccCceec
Confidence 8999999 9999995
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.98 E-value=6.4e-31 Score=246.58 Aligned_cols=251 Identities=68% Similarity=1.127 Sum_probs=196.2
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (254)
||+|||.+++|.+++++||++++.+++.|..++.++.+++++|++++.+.++|.++|+++||+|++|++|++|+.+++.+
T Consensus 173 ~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~ 252 (474)
T TIGR02732 173 MWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSD 252 (474)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCC
Confidence 69999999999999999999999999987777888899999999988899999999999999999999999999864101
Q ss_pred CcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHH
Q 025358 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (254)
Q Consensus 81 g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (254)
+..++++|.+.++.+++.+.||+||+|+|++.+.+||++.+...+.+..+.++++.||++|||+||+++..-...+....
T Consensus 253 ~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~ 332 (474)
T TIGR02732 253 GSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQ 332 (474)
T ss_pred CceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhc
Confidence 20027777775211236689999999999999999999765444577888899999999999999998752111111011
Q ss_pred hhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCCcceee
Q 025358 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSISIIPRF 238 (254)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~ 238 (254)
|......++++|..+..+.+|.+++++.+++|++.+...++++++++++++.++++|+|+++++++|+ ||++ ..+++
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~-~~~~~ 411 (474)
T TIGR02732 333 LKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSS-KNLKL 411 (474)
T ss_pred ccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccc-cCCce
Confidence 10001234555555555556667666666345555556779999999999999999999999999999 9997 66789
Q ss_pred eeeeEEeeeCceeec
Q 025358 239 RSYLVVCCQNRAIFV 253 (254)
Q Consensus 239 ~~~~v~~~~~~a~~~ 253 (254)
++++|+| +++|||.
T Consensus 412 ~~~~v~~-~~~a~~~ 425 (474)
T TIGR02732 412 TWSSVVK-LAQSLYR 425 (474)
T ss_pred eEEEEEE-ecCceec
Confidence 9999999 9999997
No 3
>PLN02612 phytoene desaturase
Probab=99.95 E-value=2.3e-26 Score=219.94 Aligned_cols=228 Identities=28% Similarity=0.537 Sum_probs=191.5
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (254)
+|+||+.++.+.+|+++|+.+++..+..+....+++.++++.|++.+.++++|+++|+++||+|++|++|++|..+++
T Consensus 262 ~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-- 339 (567)
T PLN02612 262 VFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-- 339 (567)
T ss_pred HHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC--
Confidence 589999999999999999999999998877777788999999998778999999999999999999999999998763
Q ss_pred CcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHH
Q 025358 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (254)
Q Consensus 81 g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (254)
| ++.+|++. +|+.+.||+||+|+|+..+++|+++.+.+.++++++.++.+.++++++|+||+++..
T Consensus 340 g--~v~~v~~~---~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~--------- 405 (567)
T PLN02612 340 G--TVKHFLLT---NGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKN--------- 405 (567)
T ss_pred C--cEEEEEEC---CCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCC---------
Confidence 5 67788886 788999999999999999999998765545677888888889999999999997631
Q ss_pred hhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCC----c
Q 025358 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSIS----I 234 (254)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~----~ 234 (254)
..+++++++++..+++.+++...+ .+++++ ++++.++++++++|..+++|++++.++++|+ ||+.. .
T Consensus 406 -----~~~~~~~~~~~~~~~~~d~S~~~~-~~~~~~-~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~ 478 (567)
T PLN02612 406 -----TYDHLLFSRSPLLSVYADMSTTCK-EYYDPN-KSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQS 478 (567)
T ss_pred -----CCCceeecCCCCceeehhhhhcch-hhcCCC-CeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccC
Confidence 345667776666667777765555 366666 5788888888889999999999999999999 99762 2
Q ss_pred ceeeeeeeEEeeeCceee
Q 025358 235 IPRFRSYLVVCCQNRAIF 252 (254)
Q Consensus 235 ~~~~~~~~v~~~~~~a~~ 252 (254)
..++.++.+++ .++++|
T Consensus 479 ~~~i~~~~~v~-~P~a~~ 495 (567)
T PLN02612 479 KAKILKYHVVK-TPRSVY 495 (567)
T ss_pred CceEEEEEEec-cCCceE
Confidence 57788899999 888765
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.92 E-value=5.9e-23 Score=191.53 Aligned_cols=227 Identities=31% Similarity=0.544 Sum_probs=176.3
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (254)
||+|++.++.+.+|+++|+.+++..++.+.....++.+++..|+..+.++++|.+.+++.|++|++|++|++|...++
T Consensus 167 ~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-- 244 (453)
T TIGR02731 167 VFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-- 244 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC--
Confidence 589999999999999999999999998866666677788888876668999999999999999999999999987653
Q ss_pred CcceEEEEEEeecCCCe-----EEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhh
Q 025358 81 AETYVKGLAMSKATDKK-----VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDL 155 (254)
Q Consensus 81 g~~~v~gv~l~~~~~g~-----~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~ 155 (254)
| ++++|++. +|+ ++.||+||+|+|++.+.+|||+......+.+.+.++++.++++++++|++++.
T Consensus 245 ~--~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~----- 314 (453)
T TIGR02731 245 G--SVKHFVLA---DGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLT----- 314 (453)
T ss_pred C--CEEEEEEe---cCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccC-----
Confidence 5 68888886 444 78999999999999999999864333346677778888899999999999764
Q ss_pred hHHHHhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCC-
Q 025358 156 ERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSI- 232 (254)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~- 232 (254)
...++++..++......+++.... ++.+++ +.++.++.+.++++..+++|+++++++++|+ ||+.
T Consensus 315 ----------~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~ 382 (453)
T TIGR02731 315 ----------TVDHLLFSRSPLLSVYADMSETCK-EYADPD-KSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHI 382 (453)
T ss_pred ----------CCCceeeeCCCcceeecchhhhCh-hhcCCC-CeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCccc
Confidence 233555555543222222221112 133444 5788877777788899999999999999999 8852
Q ss_pred --CcceeeeeeeEEeeeCceee
Q 025358 233 --SIIPRFRSYLVVCCQNRAIF 252 (254)
Q Consensus 233 --~~~~~~~~~~v~~~~~~a~~ 252 (254)
.....++++.+++ +++|+|
T Consensus 383 ~~~~~~~~~~~~~~~-~p~a~~ 403 (453)
T TIGR02731 383 KADSPAKILKYKVVK-TPRSVY 403 (453)
T ss_pred CCCCCceEEEEEEEE-CCCcee
Confidence 2456788899998 888876
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.81 E-value=3e-18 Score=157.13 Aligned_cols=216 Identities=21% Similarity=0.253 Sum_probs=157.0
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHH-HHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFAL-FATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~-~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (254)
||+|++.+..+.+|+++|+.+++..++. +.+...+..+.+++|+.++.+.++|++.|++.|++|++|++|++|..++
T Consensus 150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-- 227 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-- 227 (419)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--
Confidence 5889999999999999999999888865 5444445578999999987777889999999999999999999999886
Q ss_pred CCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHH
Q 025358 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (254)
Q Consensus 80 ~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~ 159 (254)
+ ++..+... +|+.+.||+||+|+|++.+.+||++. ...+.+.++++.++.+++|.|++++..
T Consensus 228 -~--~~~~~~~~---~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~-------- 289 (419)
T TIGR03467 228 -G--GIRALVLS---GGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRL-------- 289 (419)
T ss_pred -C--cceEEEec---CCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCC--------
Confidence 3 34332222 67788999999999999999999862 234567788888999999999986620
Q ss_pred HhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCCccee
Q 025358 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSISIIPR 237 (254)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~ 237 (254)
+.+...+...+..+++. .+ ... + ...++.++++.++++..+++|++++.++++|+ +|.. ...+
T Consensus 290 ------~~~~~~~~~~~~~~~~~-~~-----~~~-~-~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~-~~~~ 354 (419)
T TIGR03467 290 ------PAPMVGLVGGLAQWLFD-RG-----QLA-G-EPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRV-AGAK 354 (419)
T ss_pred ------CCCeeeecCCceeEEEE-CC-----cCC-C-CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCcc-ccCC
Confidence 11111122122112221 11 011 1 12466667777778888999999999999999 8865 3455
Q ss_pred eeeeeEEeeeCceee
Q 025358 238 FRSYLVVCCQNRAIF 252 (254)
Q Consensus 238 ~~~~~v~~~~~~a~~ 252 (254)
+..++|++ ++++.+
T Consensus 355 ~~~~~~~~-~~~~~~ 368 (419)
T TIGR03467 355 PLWARVIK-EKRATF 368 (419)
T ss_pred ccceEEEE-ccCCcc
Confidence 66777888 555554
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.78 E-value=2.7e-17 Score=151.80 Aligned_cols=222 Identities=18% Similarity=0.201 Sum_probs=157.8
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhc-c--CCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEecc
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATK-T--EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK 77 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~-~--~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~ 77 (254)
||+|++....+.+++++|+.+++..+...... . ....++++.|+.+ .++++|.+.+++.|++|++|++|++|..++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~ 228 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFA-TLIDALAEAIEARGGEIRLGTPVTSVVIDG 228 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHH-HHHHHHHHHHHhcCceEEeCCCeeEEEEcC
Confidence 58999999999999999999987766643211 1 1235888999975 699999999999999999999999999876
Q ss_pred CCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhH
Q 025358 78 AANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLER 157 (254)
Q Consensus 78 ~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~ 157 (254)
+ ++.++. . +|+.++||+||+|+|++.+.+|+++.. ....+.+.++.+.+++++++++++++.+
T Consensus 229 ---~--~~~~~~-~---~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 291 (434)
T PRK07233 229 ---G--GVTGVE-V---DGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLTD------ 291 (434)
T ss_pred ---C--ceEEEE-e---CCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCCC------
Confidence 3 455554 3 677899999999999999999987532 2234556778888999999999986641
Q ss_pred HHHhhhccCCCceeecCCC--CccceeccCCCCCcccccCCCceE-EEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCC
Q 025358 158 SRQLRRALGLDNLLYTPDA--DFSCFADLALTSPEDYYREGQGSL-LQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSI 232 (254)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~s~~~p~~~~~~g~~~~-~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~ 232 (254)
..|....++ .+..+.+.+..+| ...++|...+ +.+++.+.++++.+++++++++++++|+ +|++
T Consensus 292 ----------~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~ 360 (434)
T PRK07233 292 ----------YYWLNINDPGAPFGGVIEHTNLVP-PERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDF 360 (434)
T ss_pred ----------CceeeecCCCCCcceEEEecccCC-ccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCC
Confidence 122221121 1111222222334 2333442222 3444444455667899999999999999 8987
Q ss_pred CcceeeeeeeEEeeeCceeec
Q 025358 233 SIIPRFRSYLVVCCQNRAIFV 253 (254)
Q Consensus 233 ~~~~~~~~~~v~~~~~~a~~~ 253 (254)
....++...|.| +++|.++
T Consensus 361 -~~~~~~~~~~~r-~~~a~~~ 379 (434)
T PRK07233 361 -DRDDVRAVRISR-APYAQPI 379 (434)
T ss_pred -ChhheeeEEEEE-ecccccc
Confidence 455788888998 6787664
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.72 E-value=2.1e-15 Score=141.69 Aligned_cols=226 Identities=17% Similarity=0.176 Sum_probs=152.6
Q ss_pred CchhHHhHhCCCCCccccHHHHHH---------HHHH-HHhc---------c-C--CceeEEeCCCCcchhHHHHHHHHH
Q 025358 1 MWDPVAYALGFIDCDNISARCMLT---------IFAL-FATK---------T-E--ASLLRMLKGSPDVYLSGPIRKYIT 58 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~---------~l~~-~~~~---------~-~--~~~~g~~~g~~~~~l~~~l~~~l~ 58 (254)
||+|++.+..+.+++++|+.+++. +++. +... . . ...+++++|+.+ .++++|.+.++
T Consensus 151 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~-~l~~~L~~~l~ 229 (479)
T PRK07208 151 FFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPG-QLWETAAEKLE 229 (479)
T ss_pred HHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcc-hHHHHHHHHHH
Confidence 589999999999999999997542 2321 1110 0 0 135788999997 58999999999
Q ss_pred hCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCC
Q 025358 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGV 136 (254)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~ 136 (254)
+.|++|++|++|++|..+++ + .+..++.. +.+|+ .+.||+||+|+|++.+.+++++. ......+.+.++.+.
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~--~--~v~~~~~~-~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~l~~~ 303 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD--G--RIAVVVVN-DTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAGLRYR 303 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC--c--EEEEEEEE-cCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhCCCcc
Confidence 99999999999999999873 4 34444432 22353 68899999999999888887632 222344556678888
Q ss_pred cEEEEEEEecCccccchhhhHHHHhhhccCCCceeecCCCCccc--eeccCCCCCcccccCCCceEE--EEEeecCCCCC
Q 025358 137 PVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSC--FADLALTSPEDYYREGQGSLL--QCVLTPGDPYM 212 (254)
Q Consensus 137 ~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~s~~~p~~~~~~g~~~~~--~~~~~~~~~~~ 212 (254)
++++++++++++.. ...+|++..++...+ ....+.-+| +.+|+|+..++ +.++..+++.+
T Consensus 304 ~~~~v~l~~~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~p~g~~~~l~~~~~~~~~~~~~ 367 (479)
T PRK07208 304 DFITVGLLVKELNL---------------FPDNWIYIHDPDVKVGRLQNFNNWSP-YLVPDGRDTWLGLEYFCFEGDDLW 367 (479)
T ss_pred eeEEEEEEecCCCC---------------CCCceEEecCCCCccceecccccCCc-ccCCCCCceEEEEEEEccCCCccc
Confidence 99999999998532 123444433322111 111111124 34566643333 33334456677
Q ss_pred CCCHHHHHHHHHHHHc-CCCCCcceeeeeeeEEeeeCcee
Q 025358 213 PLPNDEIIRRVAKQVG-FSSISIIPRFRSYLVVCCQNRAI 251 (254)
Q Consensus 213 ~~~~eei~~~v~~~L~-~P~~~~~~~~~~~~v~~~~~~a~ 251 (254)
.+++|+++++++++|+ +.-+ ...++..+.|+| .++|.
T Consensus 368 ~~~deel~~~~~~~L~~l~~~-~~~~~~~~~v~r-~~~a~ 405 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGLI-RPADVEDGFVVR-VPKAY 405 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCCC-ChhheeEEEEEE-ecCcc
Confidence 8999999999999999 5224 467889999999 66664
No 8
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=8.4e-17 Score=148.52 Aligned_cols=234 Identities=39% Similarity=0.607 Sum_probs=186.9
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhcc-CCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCC
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKT-EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~-~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (254)
.|.|+.++++|..++++||+.+.+.+..|...+ +++.+.+++|+..+.+..++.++++++|+++|++.+|.+|.....
T Consensus 168 ~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~- 246 (485)
T COG3349 168 AFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGA- 246 (485)
T ss_pred HHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeecccc-
Confidence 389999999999999999999999999987665 888999999999999999999999999999999999999998762
Q ss_pred CCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHH
Q 025358 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (254)
Q Consensus 80 ~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~ 159 (254)
++..+++|+.+.. ..-+...++.|+.+...+.+...+|..|.....++++..+...|++++++++++.+...-...+..
T Consensus 247 ~~~~~~~g~~~~~-~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 325 (485)
T COG3349 247 RGLAKVTGGDVTG-PEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQF 325 (485)
T ss_pred ccccceEeeeecC-cceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccccccchhh
Confidence 1212678887741 112345688889998899999999998876678899999999999999999998765332222110
Q ss_pred HhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCCccee
Q 025358 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSISIIPR 237 (254)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~ 237 (254)
-.+|..++.++..+++.+.+.+++ .++.+|...+++.++.++..|...+++++...+.+++. +|.. ..++
T Consensus 326 ------~~dn~~~s~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~-~~a~ 397 (485)
T COG3349 326 ------GIDNLLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSL-AEAK 397 (485)
T ss_pred ------hhhccccccccCCceeeeccccch-hhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCch-hccc
Confidence 134444566667777888877766 47777766788999999999999999999999999999 7876 3334
Q ss_pred eeeeeEEe
Q 025358 238 FRSYLVVC 245 (254)
Q Consensus 238 ~~~~~v~~ 245 (254)
.++.++|
T Consensus 398 -~~~~~i~ 404 (485)
T COG3349 398 -LKSSVLV 404 (485)
T ss_pred -cccccee
Confidence 5556666
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.65 E-value=7.1e-15 Score=138.69 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=130.3
Q ss_pred CCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 025358 11 FIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (254)
Q Consensus 11 ~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l 90 (254)
..+|++.|+...+.++.. .....+ ..++.|+.+ .|+++|++.+++.||+|++|++|++|..++ + ++.+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~G--~~~~~GG~~-~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~ 270 (492)
T TIGR02733 200 QEDADETAALYGATVLQM-AQAPHG--LWHLHGSMQ-TLSDRLVEALKRDGGNLLTGQRVTAIHTKG---G--RAGWVVV 270 (492)
T ss_pred cCChhhhhHHHHHHHhhc-cccCCC--ceeecCcHH-HHHHHHHHHHHhcCCEEeCCceEEEEEEeC---C--eEEEEEE
Confidence 345667776664433332 211112 345788886 599999999999999999999999999986 4 6778877
Q ss_pred eecCC--CeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCc-EEEEEEEecCccccchhhhHHHHhhhccCC
Q 025358 91 SKATD--KKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVP-VVTVQLRYNGWVTELQDLERSRQLRRALGL 167 (254)
Q Consensus 91 ~~~~~--g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~-i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~ 167 (254)
.++.+ ++++.||+||+|+|++.+.+|+++......+.+++.++++++ .+++++.+++...++. .. .+
T Consensus 271 ~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~-------~~---~~ 340 (492)
T TIGR02733 271 VDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVD-------CP---PH 340 (492)
T ss_pred ecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCC-------CC---cc
Confidence 62111 267899999999999988889875333333556677777664 5588999987432111 00 11
Q ss_pred CceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecCCCCCC-------CCHHHHHHHHHHHHc--CCCCCc
Q 025358 168 DNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMP-------LPNDEIIRRVAKQVG--FSSISI 234 (254)
Q Consensus 168 ~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~~~~~~-------~~~eei~~~v~~~L~--~P~~~~ 234 (254)
..+.+.. ..++|.+.+..+| +.+|+|+.++...+..+..+|.. ..++++.+++++.|+ +|++..
T Consensus 341 ~~~~~~~--~~~~~v~~~~~d~-~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l~~ 413 (492)
T TIGR02733 341 LQFLSDH--QGSLFVSISQEGD-GRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLLEE 413 (492)
T ss_pred eeeccCC--CceEEEEeCCccc-cCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 1223332 2356766655566 47888854443333333333322 235778999999998 999843
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.60 E-value=4.6e-14 Score=130.41 Aligned_cols=215 Identities=20% Similarity=0.170 Sum_probs=147.3
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccC-----------------CceeEEeCCCCcchhHHHHHHHHHhCCcE
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTE-----------------ASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~-----------------~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (254)
||+||+-+....+++++||+.....+.+-.+..+ ...+++++|+++ .|++++++.++..
T Consensus 153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~-~l~~al~~~l~~~--- 228 (444)
T COG1232 153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQ-SLIEALAEKLEAK--- 228 (444)
T ss_pred HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHH-HHHHHHHHHhhhc---
Confidence 5789999999999999999943333332111111 125899999996 5899999999988
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEE
Q 025358 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (254)
Q Consensus 64 i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (254)
|++|++|++|..+++ + .+++.. +|+.+.||.||+|+|++.+.+||++. +..+-..++.+.++++|.+
T Consensus 229 i~~~~~V~~i~~~~~--~----~~~~~~---~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s~~~vv~ 295 (444)
T COG1232 229 IRTGTEVTKIDKKGA--G----KTIVDV---GGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYTSVVTVVV 295 (444)
T ss_pred eeecceeeEEEEcCC--c----cEEEEc---CCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhccccceEEEEE
Confidence 999999999999852 3 445554 78889999999999999999999872 2345566788889999999
Q ss_pred EecCccccchhhhHHHHhhhccCCC-ceeecCCCCccceecc--CCCCCcccccCCCceEEEEEee-cCC-CCCCCCHHH
Q 025358 144 RYNGWVTELQDLERSRQLRRALGLD-NLLYTPDADFSCFADL--ALTSPEDYYREGQGSLLQCVLT-PGD-PYMPLPNDE 218 (254)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~--s~~~p~~~~~~g~~~~~~~~~~-~~~-~~~~~~~ee 218 (254)
.++.+-.+ . .++ .|++..+....+-.+. |..-| ...|+| ++++.+.+. +.+ ....++|||
T Consensus 296 ~~~~~~~~---------~----~~~~~g~~iad~~~~~~a~~~~S~~~p-~~~p~g-~~ll~~~~~~~g~~~~~~~~dee 360 (444)
T COG1232 296 GLDEKDNP---------A----LPDGYGLLIADDDPYILAITFHSNKWP-HEAPEG-KTLLRVEFGGPGDESVSTMSDEE 360 (444)
T ss_pred Eecccccc---------C----CCCceEEEEecCCCcceeEEEecccCC-CCCCCC-cEEEEEEeecCCCcchhccCHHH
Confidence 99985210 0 233 3444444332122222 22223 223445 567666665 333 446889999
Q ss_pred HHHHHHHHHc--CCCCCcceeeeeeeEEeeeCcee
Q 025358 219 IIRRVAKQVG--FSSISIIPRFRSYLVVCCQNRAI 251 (254)
Q Consensus 219 i~~~v~~~L~--~P~~~~~~~~~~~~v~~~~~~a~ 251 (254)
+++.++++|. ++.. .+.. .+.|.| +++|-
T Consensus 361 ~~~~~l~~L~~~~~~~-~~~~--~~~v~r-~~~~~ 391 (444)
T COG1232 361 LVAAVLDDLKKLGGIN-GDPV--FVEVTR-WKYAM 391 (444)
T ss_pred HHHHHHHHHHHHcCcC-cchh--heeeee-ccccC
Confidence 9999999999 5443 4333 777777 66553
No 11
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.55 E-value=2.1e-13 Score=128.80 Aligned_cols=197 Identities=14% Similarity=0.180 Sum_probs=129.8
Q ss_pred CCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee
Q 025358 13 DCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK 92 (254)
Q Consensus 13 ~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~ 92 (254)
++.+.++...+.++.. ....-+.++.|+.. .+++.|.+.++++||+|+++++|++|..++ + ++.+|++.
T Consensus 200 p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~~-~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~~- 268 (493)
T TIGR02730 200 PADQTPMINAGMVFSD----RHYGGINYPKGGVG-QIAESLVKGLEKHGGQIRYRARVTKIILEN---G--KAVGVKLA- 268 (493)
T ss_pred CcccchhhhHHHhhcc----cccceEecCCChHH-HHHHHHHHHHHHCCCEEEeCCeeeEEEecC---C--cEEEEEeC-
Confidence 4466666554444321 11123466787775 689999999999999999999999999886 5 68899886
Q ss_pred cCCCeEEEcCEEEEcCChh-hHhhcCCCcccCchhHHHhhcCCCC-cEEEEEEEecCccccchhhhHHHHhhhccCCCce
Q 025358 93 ATDKKVVQADAYVAACDVP-GIKRLLPSSWREMKFFNNIYALVGV-PVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL 170 (254)
Q Consensus 93 ~~~g~~~~aD~VV~a~p~~-~~~~Ll~~~~~~~~~~~~~~~l~~~-~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~ 170 (254)
+|++++||.||+|++++ .+.+|+++...+..+...+++++.+ +.+++|+.++++..+.+. ..+++
T Consensus 269 --~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-----------~~~~~ 335 (493)
T TIGR02730 269 --DGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-----------ECHHI 335 (493)
T ss_pred --CCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-----------CccEE
Confidence 78889999999999875 5777998654333333344566644 688999999986532110 01122
Q ss_pred eec-----CCCCccceecc-CCCCCcccccCCCceEEEEEe-ecCCCCCC-------CCHHHHHHHHHHHHc--CCCCCc
Q 025358 171 LYT-----PDADFSCFADL-ALTSPEDYYREGQGSLLQCVL-TPGDPYMP-------LPNDEIIRRVAKQVG--FSSISI 234 (254)
Q Consensus 171 ~~~-----~~~~~~~~~~~-s~~~p~~~~~~g~~~~~~~~~-~~~~~~~~-------~~~eei~~~v~~~L~--~P~~~~ 234 (254)
++. .....++|.+. +.++| +.+|+|+ +.+.+.+ .+...|.+ ..++++.+++++.|+ +|+++.
T Consensus 336 ~~~~~~~~~~~~~~~~v~~ps~~dp-s~aP~G~-~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~ 413 (493)
T TIGR02730 336 LLEDWTNLEKPQGTIFVSIPTLLDP-SLAPEGH-HIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDS 413 (493)
T ss_pred ecchhhccCCCCCeEEEEeCCCCCC-CCCcCCc-EEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhh
Confidence 211 12234566666 56778 5888884 5554433 22334422 236779999999998 899844
Q ss_pred c
Q 025358 235 I 235 (254)
Q Consensus 235 ~ 235 (254)
.
T Consensus 414 ~ 414 (493)
T TIGR02730 414 A 414 (493)
T ss_pred c
Confidence 3
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.53 E-value=9.6e-13 Score=123.22 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=140.5
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHH-----------h------ccCCceeEEeCCCCcchhHHHHHHHHHhCCcE
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFA-----------T------KTEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~-----------~------~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (254)
+|+|++.+.++.+++++|+..++..+..+. . ...+..+.+++|+++ .++++|++.+++ ++
T Consensus 164 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~--~~ 240 (463)
T PRK12416 164 QIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLS-TIIDRLEEVLTE--TV 240 (463)
T ss_pred HHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHH-HHHHHHHHhccc--cc
Confidence 589999999999999999986444332111 0 022234677899996 588999999865 78
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEE
Q 025358 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (254)
Q Consensus 64 i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (254)
|++|++|++|..++ + + +.|.+. +|+.+.||+||+|+|++.+.+|+++. .....+.++.+.++.++++
T Consensus 241 i~~~~~V~~I~~~~---~--~-~~v~~~---~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l 307 (463)
T PRK12416 241 VKKGAVTTAVSKQG---D--R-YEISFA---NHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYL 307 (463)
T ss_pred EEcCCEEEEEEEcC---C--E-EEEEEC---CCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEE
Confidence 99999999999876 3 3 345554 67788999999999999999998752 2334567788889999999
Q ss_pred EecCccccchhhhHHHHhhhccCCCc--eeecCCCCccceecc--CCCCCcccccCCCceEEEEEee----cCCCCCCCC
Q 025358 144 RYNGWVTELQDLERSRQLRRALGLDN--LLYTPDADFSCFADL--ALTSPEDYYREGQGSLLQCVLT----PGDPYMPLP 215 (254)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~--s~~~p~~~~~~g~~~~~~~~~~----~~~~~~~~~ 215 (254)
+|+++... + +.+. ++...+....+-.+. +..-+. .+++...++.+++. .++.+..++
T Consensus 308 ~~~~~~~~---------~----~~~g~G~l~~~~~~~~~~~~~~~s~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (463)
T PRK12416 308 GFDILDEQ---------L----PADGTGFIVTENSDLHCDACTWTSRKWKH--TSGKQKLLVRMFYKSTNPVYETIKNYS 372 (463)
T ss_pred EechhhcC---------C----CCCceEEEeeCCCCCeEEEEEeecCCCCC--cCCCCeEEEEEEeCCCCCCchhhhcCC
Confidence 99964310 0 1122 333323221111111 111110 11223445555553 224567889
Q ss_pred HHHHHHHHHHHHc-CCCCCcceeeeeeeEEeeeCce
Q 025358 216 NDEIIRRVAKQVG-FSSISIIPRFRSYLVVCCQNRA 250 (254)
Q Consensus 216 ~eei~~~v~~~L~-~P~~~~~~~~~~~~v~~~~~~a 250 (254)
+|++.+.++++|+ +-++. .+...+.|.+ +++|
T Consensus 373 dee~~~~~~~~L~~~lG~~--~~p~~~~v~~-W~~a 405 (463)
T PRK12416 373 EEELVRVALYDIEKSLGIK--GEPEVVEVTN-WKDL 405 (463)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCceEEEEEE-cccc
Confidence 9999999999999 33442 3556788888 4444
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.53 E-value=8.6e-13 Score=122.55 Aligned_cols=218 Identities=19% Similarity=0.214 Sum_probs=141.1
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHh---------------c--cCCceeEEeCCCCcchhHHHHHHHHHhCCcE
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFAT---------------K--TEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~---------------~--~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (254)
+|+|++....+.+++++|+.+++..+..+.. . ..+.....+.|+++ .+.+.+.+.+++. +
T Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~l~~~l~~~l~~~--~ 235 (451)
T PRK11883 159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQ-SLIEALEEKLPAG--T 235 (451)
T ss_pred HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHH-HHHHHHHHhCcCC--e
Confidence 5899999999999999999886644432110 0 11234566788885 5788888887654 8
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEE
Q 025358 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (254)
Q Consensus 64 i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (254)
|++|++|++|..++ + . +.|.+. +|+.+.||+||+|+|++.+.+++.+. +..+.+.++++.++.++++
T Consensus 236 i~~~~~V~~i~~~~---~--~-~~v~~~---~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 236 IHKGTPVTKIDKSG---D--G-YEIVLS---NGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVAL 302 (451)
T ss_pred EEeCCEEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEE
Confidence 99999999999876 2 2 345554 78889999999999999998887642 2345667888889999999
Q ss_pred EecCccccchhhhHHHHhhhccCCCceeecCCCCcccee--ccCCCCCcccccCCCceEEEEEee-cCC-CCCCCCHHHH
Q 025358 144 RYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFA--DLALTSPEDYYREGQGSLLQCVLT-PGD-PYMPLPNDEI 219 (254)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~~p~~~~~~g~~~~~~~~~~-~~~-~~~~~~~eei 219 (254)
+|+++... .. ...++++..+....+.. ..+...| ...|+| ..++.++.. +++ ....++++++
T Consensus 303 ~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~p~g-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (451)
T PRK11883 303 AFPESATN---------LP---DGTGFLVARNSDYTITACTWTSKKWP-HTTPEG-KVLLRLYVGRPGDEAVVDATDEEL 368 (451)
T ss_pred EeccccCC---------CC---CceEEEecCCCCCcEEEEEeEcCcCC-CCCCCC-cEEEEEecCCCCCchhccCCHHHH
Confidence 99986310 00 11234444332221111 1122223 234444 344444432 322 3467899999
Q ss_pred HHHHHHHHc-CCCCCcceeeeeeeEEeeeCcee
Q 025358 220 IRRVAKQVG-FSSISIIPRFRSYLVVCCQNRAI 251 (254)
Q Consensus 220 ~~~v~~~L~-~P~~~~~~~~~~~~v~~~~~~a~ 251 (254)
++.++++|+ ..+++. +..++.|.| +.+|.
T Consensus 369 ~~~~~~~L~~~~g~~~--~~~~~~~~r-w~~a~ 398 (451)
T PRK11883 369 VAFVLADLSKVMGITG--DPEFTIVQR-WKEAM 398 (451)
T ss_pred HHHHHHHHHHHhCCCC--CceEEEEee-cCccC
Confidence 999999999 434432 344677777 55663
No 14
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.49 E-value=3.7e-12 Score=120.44 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=125.1
Q ss_pred CCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe
Q 025358 12 IDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (254)
Q Consensus 12 ~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~ 91 (254)
.+|.+.++...+..+..+ .. -+.++.|+.. .+++.|.+.++++|++|+++++|++|..++ + ++++|++.
T Consensus 190 ~~p~~~~~~~~l~~~~~~---~~--g~~~~~gG~~-~l~~al~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~V~~~ 258 (502)
T TIGR02734 190 GNPFRTPSIYALISALER---EW--GVWFPRGGTG-ALVAAMAKLAEDLGGELRLNAEVIRIETEG---G--RATAVHLA 258 (502)
T ss_pred cCcccchHHHHHHHHHHh---hc--eEEEcCCCHH-HHHHHHHHHHHHCCCEEEECCeEEEEEeeC---C--EEEEEEEC
Confidence 556666765433221111 11 2336777764 799999999999999999999999999876 4 68889886
Q ss_pred ecCCCeEEEcCEEEEcCChhh-HhhcCCCcccCchhHHHhhcCCC-CcEEEEEEEec---CccccchhhhHHHHhhhccC
Q 025358 92 KATDKKVVQADAYVAACDVPG-IKRLLPSSWREMKFFNNIYALVG-VPVVTVQLRYN---GWVTELQDLERSRQLRRALG 166 (254)
Q Consensus 92 ~~~~g~~~~aD~VV~a~p~~~-~~~Ll~~~~~~~~~~~~~~~l~~-~~i~~v~L~~d---~~~~~~~~~~~~~~l~~~~~ 166 (254)
+|+.+.||.||+|++++. +..|+++........+++++++. .+.+++|+.++ +++... .
T Consensus 259 ---~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~-------------~ 322 (502)
T TIGR02734 259 ---DGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQL-------------A 322 (502)
T ss_pred ---CCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCCc-------------C
Confidence 788899999999999855 56677764332222344556663 47788899998 333210 1
Q ss_pred CCceeecC---------------CCCccceecc-CCCCCcccccCCCceEEEEEeecCC-----CCCCCCHHHHHHHHHH
Q 025358 167 LDNLLYTP---------------DADFSCFADL-ALTSPEDYYREGQGSLLQCVLTPGD-----PYMPLPNDEIIRRVAK 225 (254)
Q Consensus 167 ~~~~~~~~---------------~~~~~~~~~~-s~~~p~~~~~~g~~~~~~~~~~~~~-----~~~~~~~eei~~~v~~ 225 (254)
++++.+.. ...+++|.+. +.+|| +.+|+|+.++...+..+.+ +|. ..++++.+++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp-~~aP~G~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~il~ 400 (502)
T TIGR02734 323 HHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDP-SLAPPGCENLYVLAPVPHLGTADVDWS-VEGPRYRDRILA 400 (502)
T ss_pred ceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCC-CCCCCCCccEEEEEeCCCCCCCCCCcH-HHHHHHHHHHHH
Confidence 12222211 1134566665 57788 5899885444333333322 232 347889999999
Q ss_pred HHc---CCCCC
Q 025358 226 QVG---FSSIS 233 (254)
Q Consensus 226 ~L~---~P~~~ 233 (254)
.|+ +|+++
T Consensus 401 ~l~~~~~p~l~ 411 (502)
T TIGR02734 401 YLEERAIPGLR 411 (502)
T ss_pred HHHHhcCCChh
Confidence 997 79883
No 15
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.48 E-value=3.4e-12 Score=119.27 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=141.2
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHH-----------Hhc---cC-----------CceeEEeCCCCcchhHHHHHH
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALF-----------ATK---TE-----------ASLLRMLKGSPDVYLSGPIRK 55 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~-----------~~~---~~-----------~~~~g~~~g~~~~~l~~~l~~ 55 (254)
||+|++.+..+.+++++|+.+++..+... ... .. +..+..+.|+++ .|.+.+++
T Consensus 155 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~ 233 (462)
T TIGR00562 155 LIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLE-TLPEEIEK 233 (462)
T ss_pred HHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHH-HHHHHHHH
Confidence 58899999999999999999865433210 000 00 111333555664 57888888
Q ss_pred HHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCC
Q 025358 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVG 135 (254)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~ 135 (254)
.|. .++|++|++|++|..+++ + +.|++. +|+++.||+||+|+|++.+..|+++.. ....+.+.++++
T Consensus 234 ~l~--~~~i~~~~~V~~I~~~~~--~----~~v~~~---~g~~~~ad~VI~t~P~~~~~~ll~~~~--~~~~~~l~~l~~ 300 (462)
T TIGR00562 234 RLK--LTKVYKGTKVTKLSHRGS--N----YTLELD---NGVTVETDSVVVTAPHKAAAGLLSELS--NSASSHLDKIHS 300 (462)
T ss_pred Hhc--cCeEEcCCeEEEEEecCC--c----EEEEEC---CCcEEEcCEEEECCCHHHHHHHhcccC--HHHHHHHhcCCC
Confidence 875 278999999999998762 2 335543 677899999999999999999997632 234567788999
Q ss_pred CcEEEEEEEecCccccchhhhHHHHhhhccCCCce--eecCCCCcccee--ccCCCCCcccccCCCceEEEEEeec--CC
Q 025358 136 VPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL--LYTPDADFSCFA--DLALTSPEDYYREGQGSLLQCVLTP--GD 209 (254)
Q Consensus 136 ~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~--~~s~~~p~~~~~~g~~~~~~~~~~~--~~ 209 (254)
.++.++.+.|+++.- .. ....+ +...+....+.. ..+...| ...|.+ .+++.+++.. +.
T Consensus 301 ~~~~~v~l~~~~~~~-----------~~--~~~~~g~l~~~~~~~~~~~~i~~s~~~p-~~~p~g-~~~l~~~~~g~~~~ 365 (462)
T TIGR00562 301 PPVANVNLGFPEGSV-----------DG--ELEGFGFLISRSSKFAILGCIFTSKLFP-NRAPPG-KTLLTAYIGGATDE 365 (462)
T ss_pred CceEEEEEEEchHHc-----------CC--CCCceEEEccCCCCCceEEEEEEccccC-CcCCCC-cEEEEEEeCCCCCc
Confidence 999999999986421 00 11222 222221111111 1112223 234444 4566666643 35
Q ss_pred CCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEeeeCceee
Q 025358 210 PYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVCCQNRAIF 252 (254)
Q Consensus 210 ~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~~~~~a~~ 252 (254)
++..+++|++++.++++|. ++ ++. .+..+.|.| +++|..
T Consensus 366 ~~~~~~~ee~~~~v~~~L~~~~g-i~~--~p~~~~v~r-w~~a~P 406 (462)
T TIGR00562 366 SIVDLSENEIINIVLRDLKKVLN-INN--EPEMLCVTR-WHRAIP 406 (462)
T ss_pred cccCCCHHHHHHHHHHHHHHHhC-CCC--CCcEEEEeE-ccccCC
Confidence 7778999999999999998 53 432 266677888 777754
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.37 E-value=7.7e-11 Score=111.24 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=136.5
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHH---------------HHhc---------------cCCceeEEeCCCCcchhH
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFAL---------------FATK---------------TEASLLRMLKGSPDVYLS 50 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~---------------~~~~---------------~~~~~~g~~~g~~~~~l~ 50 (254)
||+|++.+..+.+++++|+.++...+.. +... ..+..+....|+++ .|+
T Consensus 164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~ 242 (496)
T PLN02576 164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLP 242 (496)
T ss_pred HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHH-HHH
Confidence 6899999999999999999975443221 1110 01223445577775 578
Q ss_pred HHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhhHhhcCCCcccCchhHH
Q 025358 51 GPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPGIKRLLPSSWREMKFFN 128 (254)
Q Consensus 51 ~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~ 128 (254)
++|++.+ | ++|++|++|++|+..++ + + +.|++. +.+| +.+.||+||+|+|+..+..|+++.. ....+
T Consensus 243 ~~la~~l---~~~~i~l~~~V~~I~~~~~--~--~-~~v~~~-~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~--~~~~~ 311 (496)
T PLN02576 243 DALAKRL---GKDKVKLNWKVLSLSKNDD--G--G-YSLTYD-TPEGKVNVTAKAVVMTAPLYVVSEMLRPKS--PAAAD 311 (496)
T ss_pred HHHHHhh---CcCcEEcCCEEEEEEECCC--C--c-EEEEEe-cCCCceeEEeCEEEECCCHHHHHHHhcccC--HHHHH
Confidence 8888766 4 68999999999998762 2 1 334443 1245 4689999999999999999987532 22455
Q ss_pred HhhcCCCCcEEEEEEEecCcc-ccchhhhHHHHhhhccCCCc--eeecCCCCccce--eccCCCCCcccccCCCceEEEE
Q 025358 129 NIYALVGVPVVTVQLRYNGWV-TELQDLERSRQLRRALGLDN--LLYTPDADFSCF--ADLALTSPEDYYREGQGSLLQC 203 (254)
Q Consensus 129 ~~~~l~~~~i~~v~L~~d~~~-~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~--~~~s~~~p~~~~~~g~~~~~~~ 203 (254)
.+.++++.++.+|+++|+++. ..... . .. +... ++..+....... ...+...| +..+++ ..++..
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~-~-~~------~~~~~g~l~~~~~~~~~lg~~~~s~~~p-~~~~~~-~~~l~~ 381 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERL-I-DG------PLEGFGQLHPRKQGVKTLGTIYSSSLFP-DRAPEG-RVLLLN 381 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccc-c-CC------CCCceEEEccCCCCCceEEEEeecCcCC-CCCCCC-CEEEEE
Confidence 677888999999999998743 10000 0 00 0111 111111111110 00112223 233444 345555
Q ss_pred Eeec--CCCCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEeeeCce
Q 025358 204 VLTP--GDPYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVCCQNRA 250 (254)
Q Consensus 204 ~~~~--~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~~~~~a 250 (254)
++.. ++.+..+++|++++.++++|. ++.- ...+.....+.+ +++|
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~-~~~~p~~~~~~~-w~~a 430 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKP-GAPPPKVVGVRV-WPKA 430 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhCCC-CCCCCcEEEEeE-cCcc
Confidence 5543 357788999999999999998 5532 212333344555 5565
No 17
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.31 E-value=9.2e-11 Score=106.62 Aligned_cols=193 Identities=16% Similarity=0.123 Sum_probs=123.6
Q ss_pred cCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-
Q 025358 33 TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP- 111 (254)
Q Consensus 33 ~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~- 111 (254)
....-++|+.|+.+ .+++++++.+++.|++|.+++.|++|.+++ | ++.||.++ ||.++.+..||||+.++
T Consensus 251 ~~~g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~---g--ka~GV~L~---dG~ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 251 GHKGGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS---G--KAVGVRLA---DGTEVRSKIVVSNATPWD 321 (561)
T ss_pred ccCCcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC---C--eEEEEEec---CCcEEEeeeeecCCchHH
Confidence 33446899999998 489999999999999999999999999997 6 89999998 99999999999998875
Q ss_pred hHhhcCCCcccCchhHHHhhcCCCC-cEEE----EEEEe----cCccccchh-hh-HHHHhhhccCCCceeec----C-C
Q 025358 112 GIKRLLPSSWREMKFFNNIYALVGV-PVVT----VQLRY----NGWVTELQD-LE-RSRQLRRALGLDNLLYT----P-D 175 (254)
Q Consensus 112 ~~~~Ll~~~~~~~~~~~~~~~l~~~-~i~~----v~L~~----d~~~~~~~~-~~-~~~~l~~~~~~~~~~~~----~-~ 175 (254)
++.+|||.++..++. .+.++++. ++.- ..+-. +.++.+++. ++ ...++. .++..+-+ . +
T Consensus 322 Tf~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~---~~H~~v~D~~~gl~s 396 (561)
T KOG4254|consen 322 TFEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQ---AHHRAVEDPRNGLAS 396 (561)
T ss_pred HHHHhCCCccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHH---HHHHHHhChhhcccc
Confidence 588999998766542 34444432 2221 01110 111100000 00 000000 01111100 0 1
Q ss_pred CCccceecc-CCCCCcccccCCCceEEEEEeecC-CCC-------CCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeE
Q 025358 176 ADFSCFADL-ALTSPEDYYREGQGSLLQCVLTPG-DPY-------MPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLV 243 (254)
Q Consensus 176 ~~~~~~~~~-s~~~p~~~~~~g~~~~~~~~~~~~-~~~-------~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v 243 (254)
....++.++ |..|| +++|+| ++++.+++... ..| .+..+++.++++++.++ +|+|++. +..+.|
T Consensus 397 ~~pvI~~siPS~lDp-tlappg-~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss--v~~~dv 471 (561)
T KOG4254|consen 397 HRPVIELSIPSSLDP-TLAPPG-KHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS--VESYDV 471 (561)
T ss_pred cCCeEEEecccccCC-CcCCCC-ceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce--EEEEec
Confidence 112234444 35678 689998 78888876422 333 34447899999999999 9999664 444443
No 18
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.15 E-value=1.2e-10 Score=105.80 Aligned_cols=217 Identities=21% Similarity=0.180 Sum_probs=129.2
Q ss_pred chhHHhHhCCCCCccccHHHHHHHHHHHHhc-----cCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEec
Q 025358 2 WDPVAYALGFIDCDNISARCMLTIFALFATK-----TEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYD 76 (254)
Q Consensus 2 w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~-----~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~ 76 (254)
|.++...+++..+...++.+....+..+... ..........| .+...+...++..|++|++|++|++|..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~g~~i~l~~~V~~I~~~ 238 (450)
T PF01593_consen 163 FRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMG----GLSLALALAAEELGGEIRLNTPVTRIERE 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETT----TTHHHHHHHHHHHGGGEESSEEEEEEEEE
T ss_pred HHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeeccc----chhHHHHHHHhhcCceeecCCcceecccc
Confidence 4455566666667777777544444332211 11111122233 34567778888889999999999999999
Q ss_pred cCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHh--hcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchh
Q 025358 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK--RLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQD 154 (254)
Q Consensus 77 ~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~--~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~ 154 (254)
+ + ++ .|.+. +|+.+.||+||+|+|+..+. .+.|.... ...+.+.++.+.++..|+|.|+++.-+-.
T Consensus 239 ~---~--~v-~v~~~---~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~--~~~~a~~~~~~~~~~~v~l~~~~~~~~~~- 306 (450)
T PF01593_consen 239 D---G--GV-TVTTE---DGETIEADAVISAVPPSVLKNILLLPPLPE--DKRRAIENLPYSSVSKVFLGFDRPFWPPD- 306 (450)
T ss_dssp S---S--EE-EEEET---TSSEEEESEEEE-S-HHHHHTSEEESTSHH--HHHHHHHTEEEEEEEEEEEEESSGGGGST-
T ss_pred c---c--cc-ccccc---cceEEecceeeecCchhhhhhhhhcccccc--cccccccccccCcceeEEEeeeccccccc-
Confidence 7 3 34 46565 88899999999999999988 45554321 12344567777788899999998653100
Q ss_pred hhHHHHhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecC-CCCCCCCHHHHHHHHHHHHc--CCC
Q 025358 155 LERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPG-DPYMPLPNDEIIRRVAKQVG--FSS 231 (254)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~-~~~~~~~~eei~~~v~~~L~--~P~ 231 (254)
. ....+++........+...+...++ . +++..+..++..+. ..+..+++|++++.++++|+ +|.
T Consensus 307 ------~----~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~ 373 (450)
T PF01593_consen 307 ------I----DFFGILYSDGFSPIGYVSDPSKFPG--R-PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPG 373 (450)
T ss_dssp ------T----TESEEEEESSTSSEEEEEEECCTTS--C-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTT
T ss_pred ------c----cccceecccCccccccccccccCcc--c-ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccc
Confidence 0 0123444433111112111111111 1 23234444444433 57788999999999999999 886
Q ss_pred CCcceeeeeeeEEeeeC
Q 025358 232 ISIIPRFRSYLVVCCQN 248 (254)
Q Consensus 232 ~~~~~~~~~~~v~~~~~ 248 (254)
.......++.+.+|.+
T Consensus 374 -~~~~~~~~~~~~~w~~ 389 (450)
T PF01593_consen 374 -ASIPDPIDITVTRWSR 389 (450)
T ss_dssp -GGGGEESEEEEEECTT
T ss_pred -cccccccccccccccc
Confidence 3556666777777544
No 19
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=3.9e-09 Score=99.75 Aligned_cols=170 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcC
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll 117 (254)
+.++.|+.+ .++++|++.+++.||+|+++++|++|.+++ | +..+++.. +|+.+++|.||+++++.....++
T Consensus 216 ~~~p~GG~~-al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~---g--~g~~~~~~---~g~~~~ad~vv~~~~~~~~~~l~ 286 (487)
T COG1233 216 VFYPRGGMG-ALVDALAELAREHGGEIRTGAEVSQILVEG---G--KGVGVRTS---DGENIEADAVVSNADPALLARLL 286 (487)
T ss_pred eeeeeCCHH-HHHHHHHHHHHHcCCEEECCCceEEEEEeC---C--cceEEecc---ccceeccceeEecCchhhhhhhh
Confidence 567889997 699999999999999999999999999997 5 55566554 56788999999999995565566
Q ss_pred CCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCceeecCCC-------------Cc-cceec
Q 025358 118 PSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDA-------------DF-SCFAD 183 (254)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~-~~~~~ 183 (254)
++..+ ..+.. ...+..+-+..++.++..+.+ + .+++.++..+. .. ++|.+
T Consensus 287 ~~~~~-~~~~~--~~~~~~~al~~~~g~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 350 (487)
T COG1233 287 GEARR-PRYRG--SYLKSLSALSLYLGLKGDLLP---------L----AHHTTILLGDTREQIEEAFDDRAGRPPPLYVS 350 (487)
T ss_pred hhhhh-hcccc--chhhhhHHHHhccCCCCCCcc---------h----hhcceEecCCcHHHHHHHhhhhcCCCCceEEe
Confidence 54221 00000 001111222334444442100 0 01111111110 00 45666
Q ss_pred c-CCCCCcccccCCCceE-EEEEeecCCCCCCCCHHHHHHHHHHHHc--CCCCCc
Q 025358 184 L-ALTSPEDYYREGQGSL-LQCVLTPGDPYMPLPNDEIIRRVAKQVG--FSSISI 234 (254)
Q Consensus 184 ~-s~~~p~~~~~~g~~~~-~~~~~~~~~~~~~~~~eei~~~v~~~L~--~P~~~~ 234 (254)
. +.+|| +.+|+|+.+. ..+...+...+++..++++.++ +..++ .|+++.
T Consensus 351 ~ps~~Dp-s~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~ 403 (487)
T COG1233 351 IPSLTDP-SLAPEGKHSTFAQLVPVPSLGDYDELKESLADA-IDALEELAPGLRD 403 (487)
T ss_pred CCCCCCC-ccCCCCCcceeeeeeecCcCCChHHHHHHHHHH-HHHHhhcCCCccc
Confidence 6 57889 6899986433 3333334345555667888877 55565 898843
No 20
>PLN03000 amine oxidase
Probab=98.59 E-value=1.2e-06 Score=87.24 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=106.7
Q ss_pred EEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHh----
Q 025358 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK---- 114 (254)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~---- 114 (254)
-...|+++ .++++|++.| .|++|++|++|...++ | +.|+. +++++.||+||+|+|+..++
T Consensus 374 ~~v~GG~~-~LieaLa~~L-----~I~Ln~~Vt~I~~~~d--g----V~V~~----~~~~~~AD~VIvTVPlgVLk~~~I 437 (881)
T PLN03000 374 CFLPGGNG-RLVQALAENV-----PILYEKTVQTIRYGSN--G----VKVIA----GNQVYEGDMVLCTVPLGVLKNGSI 437 (881)
T ss_pred EEeCCCHH-HHHHHHHhhC-----CcccCCcEEEEEECCC--e----EEEEE----CCcEEEeceEEEcCCHHHHhhCce
Confidence 34667885 5788888766 3999999999998763 3 22433 44689999999999999998
Q ss_pred hcCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCce--eecCCC---CccceeccCCCCC
Q 025358 115 RLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL--LYTPDA---DFSCFADLALTSP 189 (254)
Q Consensus 115 ~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~---~~~~~~~~s~~~p 189 (254)
.+.|+.+ ....+.+.++.+-.+.-|++.|+++.=+ . ..+.+ +..... .+..|.+
T Consensus 438 ~F~PpLP--~~K~~AI~rL~~G~l~KViL~Fd~~FW~----~---------d~~~FG~l~~~~~~rg~~~~f~s------ 496 (881)
T PLN03000 438 KFVPELP--QRKLDCIKRLGFGLLNKVAMLFPYVFWS----T---------DLDTFGHLTEDPNYRGEFFLFYS------ 496 (881)
T ss_pred eeCCCCC--HHHHHHHHcCCCcceEEEEEEeCCcccc----C---------CCCceeEEecCCCCCceeEEEeC------
Confidence 4555432 2234567888888899999999985410 0 11111 111111 1111111
Q ss_pred cccccCCCceEEEEEeec--CCCCCCCCHHHHHHHHHHHHc--CCC-CCcceeeeeeeEEeee
Q 025358 190 EDYYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQVG--FSS-ISIIPRFRSYLVVCCQ 247 (254)
Q Consensus 190 ~~~~~~g~~~~~~~~~~~--~~~~~~~~~eei~~~v~~~L~--~P~-~~~~~~~~~~~v~~~~ 247 (254)
+.+..++.++..++.. +..+..++++++++.++++|. |+. -....+.+.+.+.+|.
T Consensus 497 --~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~ 557 (881)
T PLN03000 497 --YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWG 557 (881)
T ss_pred --CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCC
Confidence 1121123456555543 346778999999999999999 742 1133566677777743
No 21
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.50 E-value=8.5e-07 Score=84.59 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=75.3
Q ss_pred CCCCCccccHHHHHHHHHHHHh----ccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceE
Q 025358 10 GFIDCDNISARCMLTIFALFAT----KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYV 85 (254)
Q Consensus 10 l~~~~~~~SA~~~~~~l~~~~~----~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v 85 (254)
+|...+..||+-+...+++|.. -...+.+.+.+...-+.++.||.++|+++||+|++|++|++|..+.+ ++.++|
T Consensus 185 ~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d-~~~~~V 263 (576)
T PRK13977 185 MFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDIT-GGKKTA 263 (576)
T ss_pred HHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CCceEE
Confidence 3566699999999999998843 34455667777776689999999999999999999999999998621 111279
Q ss_pred EEEEEeecCCCe---EEEcCEEEEcCC
Q 025358 86 KGLAMSKATDKK---VVQADAYVAACD 109 (254)
Q Consensus 86 ~gv~l~~~~~g~---~~~aD~VV~a~p 109 (254)
+||.+..+++++ ..++|.||+++.
T Consensus 264 tgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 264 TAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred EEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 999886322333 245899999865
No 22
>PLN02676 polyamine oxidase
Probab=98.42 E-value=4.4e-06 Score=79.09 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=101.8
Q ss_pred CCCCcchhHHHHHHHHHhC------CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhh
Q 025358 42 KGSPDVYLSGPIRKYITDK------GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR 115 (254)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~------Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~ 115 (254)
.++++ .+++.|.+.+.+. +.+|++|++|++|...++ | | .|.+. +|+++.||+||+|+|+..+++
T Consensus 220 ~~G~~-~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--g---V-~V~~~---~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 220 PRGYE-SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--G---V-TVKTE---DGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred CCCHH-HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCC--c---E-EEEEC---CCCEEEeCEEEEccChHHhcc
Confidence 35664 5788888876543 357999999999998763 4 2 35554 788999999999999999875
Q ss_pred -cCCCc-ccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCceeecCCC--CccceeccCCCCCcc
Q 025358 116 -LLPSS-WREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDA--DFSCFADLALTSPED 191 (254)
Q Consensus 116 -Ll~~~-~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~s~~~p~~ 191 (254)
.+.-. ..+....+.+.++......-+.+.|+++.=+ . +. ....+.+.... ...++... +.
T Consensus 290 ~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~----~---~~----~~~~~~~~~~~~~~~~~~~~~---~~-- 353 (487)
T PLN02676 290 DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP----S---GP----GTEFFLYAHERRGYYPFWQHL---EN-- 353 (487)
T ss_pred CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC----C---CC----Cceeeeeeccccccchhhhhc---cc--
Confidence 22111 1112223455677766888899999986410 0 00 00111111110 00111110 11
Q ss_pred cccCCCceEEEEEeec--CCCCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEe
Q 025358 192 YYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVC 245 (254)
Q Consensus 192 ~~~~g~~~~~~~~~~~--~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~ 245 (254)
.+++. +++.+++.. +..+..+++++..+.+++.|+ |+. ...++.++.+..
T Consensus 354 -~~~~~-~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~--~~~~p~~~~~~~ 407 (487)
T PLN02676 354 -EYPGS-NVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP--NIPEATDILVPR 407 (487)
T ss_pred -CCCCC-CEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC--CCCCcceEEecc
Confidence 01222 344454432 235667899999999999999 752 234566666655
No 23
>PLN02268 probable polyamine oxidase
Probab=98.41 E-value=1.1e-05 Score=74.88 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhc-CCCcc-cCchhHHH
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-LPSSW-REMKFFNN 129 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~L-l~~~~-~~~~~~~~ 129 (254)
.+.+.|. .|++|++|++|++|...++ + + .|++. +|+++.||+||+|+|+..++++ +.-.+ .+....+.
T Consensus 202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~--~---v-~v~~~---~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~a 271 (435)
T PLN02268 202 PVINTLA-KGLDIRLNHRVTKIVRRYN--G---V-KVTVE---DGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEA 271 (435)
T ss_pred HHHHHHh-ccCceeCCCeeEEEEEcCC--c---E-EEEEC---CCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHH
Confidence 3444443 3678999999999998763 3 3 35554 7888999999999999998753 21111 11122345
Q ss_pred hhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEeecC-
Q 025358 130 IYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPG- 208 (254)
Q Consensus 130 ~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~~~~- 208 (254)
+.++.+.++..+.+.|+++.=+ . . .....+.........+.+.. + ..| ..++.+++...
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~----~----~----~~~g~~~~~~~~~~~~~~~~---~----~~g-~~~l~~~~~g~~ 331 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWP----N----V----EFLGVVAPTSYGCSYFLNLH---K----ATG-HPVLVYMPAGRL 331 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCC----C----C----ceeeccCCCCCCceEEEecc---c----CCC-CCEEEEEeccHH
Confidence 5677777888899999985310 0 0 00011111011111111110 0 122 23555555432
Q ss_pred -CCCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEee
Q 025358 209 -DPYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVCC 246 (254)
Q Consensus 209 -~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~~ 246 (254)
..+..++++++++.++++|. +|.. .....+.+.+|
T Consensus 332 a~~~~~~~~~e~~~~v~~~L~~~~~~~---~~p~~~~~~~W 369 (435)
T PLN02268 332 ARDIEKLSDEAAANFAMSQLKKMLPDA---TEPVQYLVSRW 369 (435)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHcCCC---CCccEEEeccc
Confidence 46678999999999999999 8753 34556666663
No 24
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.39 E-value=1.7e-05 Score=78.73 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=106.5
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhh--
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR-- 115 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~-- 115 (254)
.....|+++ .|+++|++.+ .|++|++|++|...++ | + -| .. +|+++.||+||+|+|+..+++
T Consensus 429 ~~~v~GG~~-~Li~aLa~~L-----~I~ln~~V~~I~~~~d--g---V-~V-~~---~G~~~~AD~VIvTvPl~vLk~~~ 492 (808)
T PLN02328 429 HCFIPGGND-TFVRELAKDL-----PIFYERTVESIRYGVD--G---V-IV-YA---GGQEFHGDMVLCTVPLGVLKKGS 492 (808)
T ss_pred EEEECCcHH-HHHHHHHhhC-----CcccCCeeEEEEEcCC--e---E-EE-Ee---CCeEEEcCEEEECCCHHHHhhcc
Confidence 445667775 5788887765 3999999999998763 3 2 22 22 688899999999999999874
Q ss_pred --cCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCC--ceeecCCCC---ccceeccCCCC
Q 025358 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLD--NLLYTPDAD---FSCFADLALTS 188 (254)
Q Consensus 116 --Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~---~~~~~~~s~~~ 188 (254)
+.|..+ ....+.+.++.+.++..|.+.|+++.=+ . ..+ +++...... +..|.+.+ .
T Consensus 493 I~F~P~LP--~~K~~AI~~l~yG~~~KV~L~F~~~FW~----~---------~~d~fG~l~~d~s~rG~~~lf~s~s--~ 555 (808)
T PLN02328 493 IEFYPELP--QRKKDAIQRLGYGLLNKVALLFPYNFWG----G---------EIDTFGHLTEDPSMRGEFFLFYSYS--S 555 (808)
T ss_pred cccCCCCC--HHHHHHHHcCCCcceEEEEEEeCCcccc----C---------CCCceEEEeecCCCCceEEEEecCC--C
Confidence 334321 2234567889888999999999985410 0 111 111111110 01111111 0
Q ss_pred CcccccCCCceEEEEEeecC--CCCCCCCHHHHHHHHHHHHc--CCC-CCcceeeeeeeEEeeeCc
Q 025358 189 PEDYYREGQGSLLQCVLTPG--DPYMPLPNDEIIRRVAKQVG--FSS-ISIIPRFRSYLVVCCQNR 249 (254)
Q Consensus 189 p~~~~~~g~~~~~~~~~~~~--~~~~~~~~eei~~~v~~~L~--~P~-~~~~~~~~~~~v~~~~~~ 249 (254)
..| +.++..++... ..+..++++++++.++++|. |+. -........+.+.+ |.+
T Consensus 556 -----~~G-~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtr-W~~ 614 (808)
T PLN02328 556 -----VSG-GPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTR-WGK 614 (808)
T ss_pred -----CCC-CcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEec-CCC
Confidence 122 34555555433 35667899999999999998 642 11335667777777 443
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=98.35 E-value=3.4e-05 Score=76.14 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=101.5
Q ss_pred EEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhc--
Q 025358 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-- 116 (254)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~L-- 116 (254)
....|+++ .++++|++ +..|++|++|++|...++ | |++.. +++++.||+||+|+|+..+++.
T Consensus 350 ~~i~GG~~-~Li~aLA~-----~L~IrLnt~V~~I~~~~d--G------VtV~t--~~~~~~AD~VIVTVPlgVLk~~~I 413 (738)
T PLN02529 350 CFLAGGNW-RLINALCE-----GVPIFYGKTVDTIKYGND--G------VEVIA--GSQVFQADMVLCTVPLGVLKKRTI 413 (738)
T ss_pred EEECCcHH-HHHHHHHh-----cCCEEcCCceeEEEEcCC--e------EEEEE--CCEEEEcCEEEECCCHHHHHhccc
Confidence 44566774 56676665 446999999999998763 3 33321 5678999999999999998743
Q ss_pred --CCCcccCchhHHHhhcCCCCcEEEEEEEecCcc-ccchhhhHHHHhhhccCCCceeecC--C-CCccceeccCCCCCc
Q 025358 117 --LPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV-TELQDLERSRQLRRALGLDNLLYTP--D-ADFSCFADLALTSPE 190 (254)
Q Consensus 117 --l~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~s~~~p~ 190 (254)
.|+. +....+.+.++.+.++..|+|.|+++. .+ ..+.+.+.. . ....++...+..
T Consensus 414 ~F~PpL--P~~K~~AI~rL~yG~v~KV~L~F~~~FW~~--------------~~~~fG~l~~~~~~~g~~~~~~~~~--- 474 (738)
T PLN02529 414 RFEPEL--PRRKLAAIDRLGFGLLNKVAMVFPSVFWGE--------------ELDTFGCLNESSNKRGEFFLFYGYH--- 474 (738)
T ss_pred cCCCCC--CHHHHHHHHcCCCceeEEEEEEeCCccccC--------------CCCceEEEeccCCCCceEEEEecCC---
Confidence 2332 122345678888889999999999864 10 011111110 0 100011111100
Q ss_pred ccccCCCceEEEEEee--cCCCCCCCCHHHHHHHHHHHHc--CC-CCCcceeeeeeeEEee
Q 025358 191 DYYREGQGSLLQCVLT--PGDPYMPLPNDEIIRRVAKQVG--FS-SISIIPRFRSYLVVCC 246 (254)
Q Consensus 191 ~~~~~g~~~~~~~~~~--~~~~~~~~~~eei~~~v~~~L~--~P-~~~~~~~~~~~~v~~~ 246 (254)
...+ +.++..++. .+..+..++++++++.++++|. |+ .-...+....+.+.+|
T Consensus 475 --~~~g-gpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W 532 (738)
T PLN02529 475 --TVSG-GPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRW 532 (738)
T ss_pred --CCCC-CCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccC
Confidence 0112 234444443 2346678899999999999999 64 2113346667777663
No 26
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.32 E-value=3e-06 Score=75.52 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=90.4
Q ss_pred CchhHHhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCC----cEEEcCceeeEEEec
Q 025358 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKG----GRFHLRWGCREILYD 76 (254)
Q Consensus 1 ~w~pl~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~ 76 (254)
+|.||..+..+++..+++...++..+..+. +. |... +++.+.-..+..+-.+++++.+ ++|+++++|.+|..-
T Consensus 170 ~l~P~~aaiwstp~~d~~~~pa~~~~~f~~-nh-Gll~-l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rl 246 (447)
T COG2907 170 FLQPLVAAIWSTPLADASRYPACNFLVFTD-NH-GLLY-LPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRL 246 (447)
T ss_pred hHHHHHHHHhcCcHhhhhhhhHHHHHHHHh-cc-Ccee-cCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeC
Confidence 699999999999999999999888875333 22 2332 4555554455666666666554 679999999999987
Q ss_pred cCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHhhcCCCCcEEEEEE
Q 025358 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (254)
Q Consensus 77 ~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (254)
.+ | |++.. .+|+...+|+||.++.++....||++... ...+-+..+.|+....|..
T Consensus 247 Pd--G------v~l~~-~~G~s~rFD~vViAth~dqAl~mL~e~sp--~e~qll~a~~Ys~n~aVlh 302 (447)
T COG2907 247 PD--G------VVLVN-ADGESRRFDAVVIATHPDQALALLDEPSP--EERQLLGALRYSANTAVLH 302 (447)
T ss_pred CC--c------eEEec-CCCCccccceeeeecChHHHHHhcCCCCH--HHHHHHHhhhhhhceeEEe
Confidence 63 5 33331 15888889999999999888888886322 2334455777766555544
No 27
>PLN02568 polyamine oxidase
Probab=98.28 E-value=1.9e-05 Score=75.72 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=69.0
Q ss_pred eCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhh-----
Q 025358 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----- 115 (254)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~----- 115 (254)
..|+++ .|++.|.+.+. +.+|++|++|++|..+++ + +.|.+. +|+++.||+||+|+|+..+++
T Consensus 237 i~gG~~-~Li~~La~~L~--~~~I~ln~~V~~I~~~~~--~----v~V~~~---dG~~~~aD~VIvTvPl~vL~~~~~~~ 304 (539)
T PLN02568 237 IAKGYL-SVIEALASVLP--PGTIQLGRKVTRIEWQDE--P----VKLHFA---DGSTMTADHVIVTVSLGVLKAGIGED 304 (539)
T ss_pred ECCcHH-HHHHHHHhhCC--CCEEEeCCeEEEEEEeCC--e----EEEEEc---CCCEEEcCEEEEcCCHHHHhhccccc
Confidence 455664 57788888774 568999999999998762 3 335554 788899999999999999885
Q ss_pred --cCCCcccCchhHHHhhcCCCCcEEEEEEEecCcc
Q 025358 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (254)
Q Consensus 116 --Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~ 149 (254)
.+.+. .+....+.+.++..-.+.-++|.|+++.
T Consensus 305 ~i~F~P~-LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 305 SGLFSPP-LPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred cceecCC-CCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 22221 1122345667787778888999999863
No 28
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=2.1e-05 Score=74.51 Aligned_cols=203 Identities=19% Similarity=0.170 Sum_probs=119.8
Q ss_pred HhHhCCCCCccccHHHHHHHHHHHHhccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceE
Q 025358 6 AYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYV 85 (254)
Q Consensus 6 ~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v 85 (254)
-+...+....+-..+.++.....|.+... . ....++.. .+...+.. |..|+++++|++|...++ + .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~-~~~~~G~~-~v~~~la~-----~l~I~~~~~v~~i~~~~~--~--~- 247 (501)
T KOG0029|consen 182 NLELTFIAHLENASARLWDQDELFGGGGI--H-LLMKGGYE-PVVNSLAE-----GLDIHLNKRVRKIKYGDD--G--A- 247 (501)
T ss_pred HHHHHhhccHhHhhHHhhhhhhhcccccc--h-hHhhCCcc-HHHhhcCC-----CcceeeceeeEEEEEecC--C--c-
Confidence 33444444444444455555444443331 1 22334443 23444443 999999999999999884 5 3
Q ss_pred EEEEEeecCCCeEEEcCEEEEcCChhhHhh----cCCCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHh
Q 025358 86 KGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQL 161 (254)
Q Consensus 86 ~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l 161 (254)
..+++. ++..+++|+||+++|...++. +-|.. +....+.++++..-.+.-|.+.|++..= +
T Consensus 248 ~~~~~~---~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L--p~~k~~aI~~lg~g~~~Kv~l~F~~~fW---------~- 312 (501)
T KOG0029|consen 248 VKVTVE---TGDGYEADAVVVTVPLGVLKSGLIEFSPPL--PRWKQEAIDRLGFGLVNKVILEFPRVFW---------D- 312 (501)
T ss_pred eEEEEE---CCCeeEeeEEEEEccHHHhccCceeeCCCC--cHHHHHHHHhcCCCceeEEEEEeccccC---------C-
Confidence 245444 455589999999999988777 23332 2235577889987788899999987431 0
Q ss_pred hhccCCCceeecCCCCccceec---cCCCCCcccccCCCceEEEEEee-cCCCCCCCCHHHHHHHHHHHHc--CCCCCcc
Q 025358 162 RRALGLDNLLYTPDADFSCFAD---LALTSPEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQVG--FSSISII 235 (254)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~---~s~~~p~~~~~~g~~~~~~~~~~-~~~~~~~~~~eei~~~v~~~L~--~P~~~~~ 235 (254)
. ..+.+.. .+..+.+.. +--..|. .++..++..++. .+..+..++++++++.++..|+ |+.. ..
T Consensus 313 ~---~~d~fg~--~~~~~~~~~~~~f~~~~~~----~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~-~~ 382 (501)
T KOG0029|consen 313 Q---DIDFFGI--VPETSVLRGLFTFYDCKPV----AGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSE-EV 382 (501)
T ss_pred C---CcCeEEE--ccccccccchhhhhhcCcc----CCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccC-cC
Confidence 0 1221111 111111111 0000121 122345555544 3467889999999999999999 8843 55
Q ss_pred eeeeeeeEEeee
Q 025358 236 PRFRSYLVVCCQ 247 (254)
Q Consensus 236 ~~~~~~~v~~~~ 247 (254)
.--.++.|+||.
T Consensus 383 ~~p~~~~vt~w~ 394 (501)
T KOG0029|consen 383 PDPLDALVTRWG 394 (501)
T ss_pred CCccceeeeeec
Confidence 777888888854
No 29
>PLN02976 amine oxidase
Probab=98.22 E-value=3.1e-05 Score=80.29 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=101.5
Q ss_pred EeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccC------C-CCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKA------A-NAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~------~-~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
...||++ .|++.|++.+ .|++|++|++|...++ . ++ . +.|.+. +|+++.||+||+|+|+..
T Consensus 930 rIkGGYq-qLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~d--G-VtVtTs---DGetftADaVIVTVPLGV 997 (1713)
T PLN02976 930 MIKGGYS-NVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRK--K-VKVSTS---NGSEFLGDAVLITVPLGC 997 (1713)
T ss_pred EeCCCHH-HHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCC--c-EEEEEC---CCCEEEeceEEEeCCHHH
Confidence 3567775 5777777754 4999999999998420 0 01 1 234443 788899999999999998
Q ss_pred Hhh--c-C-CCcccCchhHHHhhcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCce--eecCC-CCccceeccC
Q 025358 113 IKR--L-L-PSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL--LYTPD-ADFSCFADLA 185 (254)
Q Consensus 113 ~~~--L-l-~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~~s 185 (254)
++. + + |+.+ ......+.++..-.+.-++|.|++++=+ . ..+.+ ..... ....+|..+.
T Consensus 998 LKag~I~FsPPLP--e~KqaAIqrLgfG~lnKV~LeFdrpFW~----~---------d~d~FG~s~edtdlrG~~~~~wn 1062 (1713)
T PLN02976 998 LKAETIKFSPPLP--DWKYSSIQRLGFGVLNKVVLEFPEVFWD----D---------SVDYFGATAEETDLRGQCFMFWN 1062 (1713)
T ss_pred hhhcccccCCccc--HHHHHHHHhhccccceEEEEEeCCcccc----C---------CCCccccccccCCCCceEEEecc
Confidence 873 1 2 3221 1123446677766788899999985410 0 00100 00000 0000111111
Q ss_pred CCCCcccccCCCceEEEEEee-cCCCCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEee
Q 025358 186 LTSPEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVCC 246 (254)
Q Consensus 186 ~~~p~~~~~~g~~~~~~~~~~-~~~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~~ 246 (254)
... +.+...++..+.. .+..+..++++++++.+++.|. |+.- ..+....+.+.+|
T Consensus 1063 lr~-----psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~-~iPdPv~~vvTrW 1120 (1713)
T PLN02976 1063 VKK-----TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEA-LVPDPVASVVTDW 1120 (1713)
T ss_pred CCC-----CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcc-cccCcceeEEecC
Confidence 111 1222234443332 2245667899999999999999 7753 4467788888884
No 30
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.06 E-value=3.8e-05 Score=71.88 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=58.0
Q ss_pred ceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 36 SLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 36 ~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
+.+.|+.++.+ .+++.+.+.++..||++++|++|++|..+++ | ++.+|++. +|+++.|+.||++...
T Consensus 222 ~p~~yp~gG~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--g--~~~~V~~~---~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 222 SPFIYPLYGLG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN--G--KVCGVKSE---GGEVAKCKLVICDPSY 288 (443)
T ss_pred CcceeeCCCHH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC--C--eEEEEEEC---CCcEEECCEEEECccc
Confidence 34678888987 5999999999999999999999999998863 6 78899886 8999999999997553
No 31
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.01 E-value=0.00021 Score=66.01 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=103.1
Q ss_pred HHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcccCchhHHHh
Q 025358 52 PIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNI 130 (254)
Q Consensus 52 ~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~ 130 (254)
.+.+.+.+ .|-.|.++++|++|...++ | |++.. .+..+..||++|+++|+..+.++-=.......+.+.+
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~--g------V~Vt~-~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~ 280 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGD--G------VTVTA-DDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAA 280 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCC--e------EEEEe-CCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHh
Confidence 33344433 4678999999999998873 4 44431 1336889999999999999887531112223455666
Q ss_pred hcCCCCcEEEEEEEecCccccchhhhHHHHhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEe--ecC
Q 025358 131 YALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVL--TPG 208 (254)
Q Consensus 131 ~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~--~~~ 208 (254)
....+.+..-+.+.|++++=+- .+ .+....|.+.+. .+.+. |+....+|.+-++..+. ..+
T Consensus 281 ~~~~y~~~~K~~v~f~rpFWee------~~-----~l~G~~~tD~~~--~~i~~----~s~~~~~G~gVl~g~~~~g~~A 343 (450)
T COG1231 281 KGVPYGSATKIGVAFSRPFWEE------AG-----ILGGESLTDLGL--GFISY----PSAPFADGPGVLLGSYAFGDDA 343 (450)
T ss_pred cCcCcchheeeeeecCchhhhh------cc-----cCCceEeecCCc--ceEec----CccccCCCceEEEeeeeccccc
Confidence 7788889999999999976210 00 134444444442 33332 21101133333444333 244
Q ss_pred CCCCCCCHHHHHHHHHHHHc--CCCCCcceeeeeeeEEeeeCce
Q 025358 209 DPYMPLPNDEIIRRVAKQVG--FSSISIIPRFRSYLVVCCQNRA 250 (254)
Q Consensus 209 ~~~~~~~~eei~~~v~~~L~--~P~~~~~~~~~~~~v~~~~~~a 250 (254)
..|..++.++.++.++.++. ||+- ...-+..+..+. +.+.
T Consensus 344 ~~~~~~~~~~r~~~vl~~l~~~~g~~-a~~~f~~~~~~~-W~~d 385 (450)
T COG1231 344 LVIDALPEAERRQKVLARLAKLFGDE-AADPFDYGASVD-WSKD 385 (450)
T ss_pred eeEecCCHHHHHHHHHHhHhhhCChh-hccccccceeee-cccC
Confidence 57889999999999999999 8864 223333334444 5443
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.62 E-value=0.00055 Score=62.76 Aligned_cols=214 Identities=17% Similarity=0.105 Sum_probs=127.0
Q ss_pred chhHHhHhCCCCCccccHHHHHHHHHH----------------HHhcc--------------CCceeEEeCCCCcchhHH
Q 025358 2 WDPVAYALGFIDCDNISARCMLTIFAL----------------FATKT--------------EASLLRMLKGSPDVYLSG 51 (254)
Q Consensus 2 w~pl~~a~l~~~~~~~SA~~~~~~l~~----------------~~~~~--------------~~~~~g~~~g~~~~~l~~ 51 (254)
-+|||-.....++++.|++..+.-+.. |+++. ..+.+.-.+|++ +.+.+
T Consensus 175 isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGl-e~lP~ 253 (491)
T KOG1276|consen 175 ISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGL-ETLPK 253 (491)
T ss_pred HHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhH-hHhHH
Confidence 368999999999999999864432211 22111 122244456777 47999
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhhHhhcCCCcccCchhHHHh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPGIKRLLPSSWREMKFFNNI 130 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~~~~Ll~~~~~~~~~~~~~ 130 (254)
++.++|.++++.|.++.+++.+..... |+ +.+.+... ++ ..+..+++..++|.+.+.+|++... .+....+
T Consensus 254 a~~~~L~~~~v~i~~~~~~~~~sk~~~--~~---~~~tl~~~-~~~~~~~~~~~~~t~~~~k~a~ll~~~~--~sls~~L 325 (491)
T KOG1276|consen 254 ALRKSLGEREVSISLGLKLSGNSKSRS--GN---WSLTLVDH-SGTQRVVVSYDAATLPAVKLAKLLRGLQ--NSLSNAL 325 (491)
T ss_pred HHHHHhcccchhhhccccccccccccc--CC---ceeEeEcC-CCceeeeccccccccchHHhhhhccccc--hhhhhhh
Confidence 999999999999999999999987653 31 34555421 33 2344555666999999999998743 2344667
Q ss_pred hcCCCCcEEEEEEEecC-----ccccchhhhHHHHhhhccCCCceeecCCCCccceeccCCCCCcccccCCCceEEEEEe
Q 025358 131 YALVGVPVVTVQLRYNG-----WVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVL 205 (254)
Q Consensus 131 ~~l~~~~i~~v~L~~d~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~g~~~~~~~~~ 205 (254)
..+.+.+++.|.+.|.. ++.+|+.+.+...-. +.. ..-.+|...- .| ...+.+ +..+-+..
T Consensus 326 ~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~---~~~-------~LG~ifdS~~--Fp-~~~~s~-~vtvm~gg 391 (491)
T KOG1276|consen 326 SEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKN---GFK-------TLGTIFDSML--FP-DRSPSP-KVTVMMGG 391 (491)
T ss_pred hcCCCCceEEEEEeccCcccccccccceeeccCCCCC---CCc-------eeEEEeeccc--CC-CCCCCc-eEEEEecc
Confidence 78889999999998876 345555443320000 000 0111222110 11 011111 11222222
Q ss_pred ecCC--CCCCCCHHHHHHHHHHHHc-CCCCCcceee
Q 025358 206 TPGD--PYMPLPNDEIIRRVAKQVG-FSSISIIPRF 238 (254)
Q Consensus 206 ~~~~--~~~~~~~eei~~~v~~~L~-~P~~~~~~~~ 238 (254)
+... .....+.|++++.+.++|. .-+++..+..
T Consensus 392 ~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~ 427 (491)
T KOG1276|consen 392 GGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVS 427 (491)
T ss_pred cccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCccc
Confidence 2222 3456788999999999998 5555444333
No 33
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.55 E-value=0.00063 Score=63.11 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=57.3
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhh----cCCCcccCchhHHHhhcCCCCc
Q 025358 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVP 137 (254)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~ 137 (254)
.+++++++|.+|..+++ | +| -+++. ||+.+.||+||++++.-.+++ |+.+... ..-.+.|.+|..-.
T Consensus 244 ~~~~~~~rv~~I~~~~~--~--~v-~l~c~---dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP-~~K~~AIe~lgfGt 314 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNT--G--EV-KLRCS---DGEVFHADHVIVTVSLGVLKEQHHKLFVPPLP-AEKQRAIERLGFGT 314 (498)
T ss_pred hhhcccccceeeccCCC--C--cE-EEEEe---CCcEEeccEEEEEeechhhhhhhhhhcCCCCC-HHHHHHHHhccCCc
Confidence 56778899999999874 5 33 47777 999999999999999887776 5533221 11235566776556
Q ss_pred EEEEEEEecCcc
Q 025358 138 VVTVQLRYNGWV 149 (254)
Q Consensus 138 i~~v~L~~d~~~ 149 (254)
+.-++|-|.+|.
T Consensus 315 v~KiFLE~E~pf 326 (498)
T KOG0685|consen 315 VNKIFLEFEEPF 326 (498)
T ss_pred cceEEEEccCCC
Confidence 777888888764
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.43 E-value=0.00035 Score=62.08 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
..+.+.|.+.+++.|++|+.+++|++|..++ + ++.||.+. +|+ +.||.||.|+.++.
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~--~v~gv~~~---~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG---G--RVTGVRTS---DGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET---T--EEEEEEET---TEE-EEECEEEE--GGGH
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc---c--cccccccc---ccc-cccceeEecccccc
Confidence 3789999999999999999999999999987 4 68889886 676 99999999998765
No 35
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.29 E-value=0.0037 Score=58.70 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=70.8
Q ss_pred HhHhCCCCCccccHHHHHHHHHHHHhccCCc--eeEEeCCCCc--chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCC
Q 025358 6 AYALGFIDCDNISARCMLTIFALFATKTEAS--LLRMLKGSPD--VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANA 81 (254)
Q Consensus 6 ~~a~l~~~~~~~SA~~~~~~l~~~~~~~~~~--~~g~~~g~~~--~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g 81 (254)
+++.+|.--.-.||.-+-..+++|...-.+. .-|+-+..+. |.++.||.++|+++||+|++|++|+.|.++.+ ++
T Consensus 162 ~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~-~~ 240 (500)
T PF06100_consen 162 MWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDIT-GD 240 (500)
T ss_pred hHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEcc-CC
Confidence 4666777777789999998888887654432 1233333433 47899999999999999999999999999753 22
Q ss_pred cceEEEEEEeecCCCeEEE---cCEEEEcCC
Q 025358 82 ETYVKGLAMSKATDKKVVQ---ADAYVAACD 109 (254)
Q Consensus 82 ~~~v~gv~l~~~~~g~~~~---aD~VV~a~p 109 (254)
...+.++.+..++..+.+. -|.|+.+..
T Consensus 241 ~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 241 KKTATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred CeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 2245677765322223333 688887644
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.20 E-value=0.00097 Score=60.78 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=50.6
Q ss_pred EeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCC
Q 025358 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (254)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p 109 (254)
||...-++.+++.|.+.++++||+|+++++|.+|..+++ ...+.+. +|+++.+|.+|+|+.
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~------~f~l~t~---~g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS------GFRLDTS---SGETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc------eEEEEcC---CCCEEEccEEEEecC
Confidence 345455568999999999999999999999999998862 3556665 788999999999987
No 37
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.15 E-value=0.0011 Score=61.37 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=45.8
Q ss_pred EEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
-||...-...+.+.|.+.+++.|++|+++++|+.|..++ + ++.+|.+. +++.+.||.||+|+.-.
T Consensus 101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~---~--~~f~v~~~---~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE---D--GVFGVKTK---NGGEYEADAVILATGGK 165 (409)
T ss_dssp EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---T--EEEEEEET---TTEEEEESEEEE----S
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---C--ceeEeecc---CcccccCCEEEEecCCC
Confidence 345544556789999999999999999999999999987 3 57778774 78899999999997743
No 38
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.14 E-value=0.0013 Score=60.83 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+++.+.++|+++|++|+++++|..|++++ + .+.+|.+. +|+++++|+||+|...
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~---~--~~~~v~~~---~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED---N--EVLGVKLT---KGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC---C--ceEEEEcc---CCcEEecCEEEEccCc
Confidence 578999999999999999999999999987 3 46778776 8999999999999875
No 39
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.96 E-value=0.0057 Score=56.77 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhhHhhcCC
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLLP 118 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~~~~Ll~ 118 (254)
..+.+.|.++++++||+|+.+++|.++..++ + ++.+|.+. ++ ..++||.||+|+..+--..|+.
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~---~--~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG---N--RVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC---C--eEEEEEec---CCccceEECCEEEEccCCCcCHHHHh
Confidence 4778999999999999999999999999887 4 68887764 44 4789999999988774444443
No 40
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.94 E-value=0.001 Score=57.85 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcc--cCchhH
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW--REMKFF 127 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~--~~~~~~ 127 (254)
..+++++|- .--+|.++++|++|...++ .+.+.+. +.++...+|.||+++|.+.+..||.... ......
T Consensus 107 msalak~LA-tdL~V~~~~rVt~v~~~~~------~W~l~~~--~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~ 177 (331)
T COG3380 107 MSALAKFLA-TDLTVVLETRVTEVARTDN------DWTLHTD--DGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALR 177 (331)
T ss_pred hHHHHHHHh-ccchhhhhhhhhhheecCC------eeEEEec--CCCcccccceEEEecCCCcchhhcCcccccchHHHH
Confidence 345666543 6678999999999998752 3445443 2445667999999999988888885421 223355
Q ss_pred HHhhcCCCCcEEEEEEEecCccc
Q 025358 128 NNIYALVGVPVVTVQLRYNGWVT 150 (254)
Q Consensus 128 ~~~~~l~~~~i~~v~L~~d~~~~ 150 (254)
..+..+.+.|+.++.|+|..++.
T Consensus 178 ~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 178 AALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred HhhccceehhHHHHHhcCCccCC
Confidence 67778888999999999987663
No 41
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.94 E-value=0.0032 Score=55.89 Aligned_cols=57 Identities=19% Similarity=0.064 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhH
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~ 113 (254)
.+...+.+.++++|++|+.+++|++|..++ + ++.+|.+. +| .+.||.||.|+.++.-
T Consensus 138 ~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~---~--~~~~v~~~---~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 138 ALLKALEKALEKLGVEIIEHTEVQHIEIRG---E--KVTAIVTP---SG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHHHcCCEEEccceEEEEEeeC---C--EEEEEEcC---CC-EEECCEEEEcCChhhh
Confidence 688999999999999999999999999865 4 67777663 55 7899999999998653
No 42
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.67 E-value=0.0074 Score=55.65 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.+.+.++++|++|+++++|++|..++ + +|+|+......+|+ .+.|++||+|+.-
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~---g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED---G--RVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET---T--EEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC---C--ceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 3688999999999999999999999999986 6 89999987334565 5679999999884
No 43
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.45 E-value=0.013 Score=54.03 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.+.+.++++|++|+.+++|++|..++ + ++.+|++ ++.++.||.||.|+..+.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~t----~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---G--RITGVQT----GGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EEEEEEe----CCcEEeCCEEEECCCcch
Confidence 577889999999999999999999998876 4 5666765 344789999999999754
No 44
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.43 E-value=0.028 Score=52.56 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHh---ccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC
Q 025358 18 SARCMLTIFALFAT---KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT 94 (254)
Q Consensus 18 SA~~~~~~l~~~~~---~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~ 94 (254)
+|.-.+..++++++ +.+.+.+.|+.-|++| |+|.+.|.-.=.||...+|++|++|.++++ | ++.||..
T Consensus 201 p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~--g--~~~gV~s---- 271 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED--G--KVIGVKS---- 271 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT--T--EEEEEEE----
T ss_pred cHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC--C--eEEEEec----
Confidence 56666667776543 3445689999999985 999999999999999999999999999763 7 7888865
Q ss_pred CCeEEEcCEEEEc
Q 025358 95 DKKVVQADAYVAA 107 (254)
Q Consensus 95 ~g~~~~aD~VV~a 107 (254)
+|+++.|+.||..
T Consensus 272 ~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 EGEVVKAKKVIGD 284 (438)
T ss_dssp TTEEEEESEEEEE
T ss_pred CCEEEEcCEEEEC
Confidence 7999999999965
No 45
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.36 E-value=0.014 Score=54.42 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE-EEcCEEEEcCChhh--HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV-VQADAYVAACDVPG--IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~-~~aD~VV~a~p~~~--~~~Ll~ 118 (254)
.+...|++.++++|++|++|++|+.|+..+| | +.-+.+. +|++ ++|+.||.+...++ +.++..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d--g---~~~~~~~---~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD--G---VFVLNTS---NGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC--c---eEEEEec---CCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 4688999999999999999999999999873 3 3434444 7766 99999999999754 555543
No 46
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.25 E-value=0.021 Score=54.52 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~--~~~Ll 117 (254)
.+...+++..++.|++|+.+++|++|..++ + ++++|++.++.+| ..+.|+.||.|+.+++ +.+++
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 197 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG---G--RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA 197 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc
Confidence 678888999999999999999999999876 5 6888887532234 4689999999998754 44433
No 47
>PRK06847 hypothetical protein; Provisional
Probab=96.12 E-value=0.31 Score=44.06 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
.+.+.|.+.+++.|++|+++++|++|..++ + + ..+.+. +|+++.+|.||.|...+. .++.+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD---D--G-VTVTFS---DGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---C--E-EEEEEc---CCCEEEcCEEEECcCCCcchhhHh
Confidence 467788888888999999999999998765 2 2 345554 788899999999998754 55443
No 48
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.12 E-value=0.024 Score=55.00 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEEc-CEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQA-DAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~-~~~a-D~VV~a~p~~ 111 (254)
.+.+.|.+.+++.|++|+++++|++|..++ | +|.||.... .++. .+.| +.||+|+...
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~---g--~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLRED---G--RVAGAVVET-PGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EEEEEEEEE-CCcEEEEEeCCEEEEcCCCc
Confidence 578999999999999999999999998865 6 799987753 1332 5788 9999998753
No 49
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.11 E-value=0.02 Score=52.59 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=48.6
Q ss_pred EEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
-||...-++.+.+.|.+.+++.|++|+++++|++| ++ + + .++.+. .+++.+.||.||+|+.-.+
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~--~-~~v~~~--~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---G--T-LRFETP--DGQSTIEADAVVLALGGAS 141 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---C--c-EEEEEC--CCceEEecCEEEEcCCCcc
Confidence 34555556689999999999999999999999999 33 2 2 456553 2345689999999988543
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.06 E-value=0.032 Score=53.76 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~ 112 (254)
.+...+++..++.|++|+.+++|++|..++ + +++||++.++.+| ..+.||.||.|+.++.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG---D--TVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC---C--eEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 567778888899999999999999999876 5 7889887532233 4789999999998764
No 51
>PRK07121 hypothetical protein; Validated
Probab=96.03 E-value=0.028 Score=53.34 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEc-CEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~a-D~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+++++|++|..+++ | ++.||+...+.+...+.| +.||+|+.-
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDD--G--RVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC--C--CEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 35788999999999999999999999998753 6 799998753111235778 999999884
No 52
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.98 E-value=0.031 Score=52.49 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-ecCCCeEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~-~~~~g~~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+++++|++|..++ + ++.||... .+.+...+.|+.||+|+..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~---g--~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDD---G--RFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--eEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3578899999999999999999999999865 5 78998773 1112346889999999873
No 53
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.98 E-value=0.027 Score=54.73 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcC-EEEEcCC
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQAD-AYVAACD 109 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD-~VV~a~p 109 (254)
..+...|.+.+++.|++|+++++|++|..+++ | +|+||.... +|+ .+.|+ .||+|+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~--g--~V~Gv~~~~--~~~~~~i~a~~aVilAtG 272 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD--G--AVVGAVVER--EGRTLRIGARRGVILATG 272 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC--C--cEEEEEEEe--CCcEEEEEeceeEEEecC
Confidence 45788899999999999999999999999753 7 899998753 443 46787 6888877
No 54
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.93 E-value=0.032 Score=51.98 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+.+.|.+.+++.|++|+++++|++|..+.+ ++ ++.||... .++..+.|+.||+|+.-
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~-~g--~v~gv~~~--~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAF-DG--AHDGPLTT--VGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCC-CC--eEEEEEEc--CCcEEEEcCEEEEcCCC
Confidence 5789999999999999999999999988621 15 78888763 24468899999999883
No 55
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.88 E-value=0.029 Score=54.13 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEc-CEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~a-D~VV~a~p~ 110 (254)
+..+...|.+.+++.|++|+++++|++|..++ | +|.||.... +|+ .+.| +.||+|+.-
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED---G--RVVGVVVVR--DGREVLIRARRGVLLASGG 267 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEEEE--CCeEEEEEecceEEEecCC
Confidence 34688999999999999999999999999875 6 899998753 443 4678 479988773
No 56
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.80 E-value=0.018 Score=52.58 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+...|.+.+++ |++|+.+++|.+|..++ + + ++|++. +|+.+.||.||.|+.++.
T Consensus 136 ~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~---~--~-~~v~t~---~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 136 QLCRALLAHAGI-RLTLHFNTEITSLERDG---E--G-WQLLDA---NGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHhccCC-CcEEEeCCEEEEEEEcC---C--e-EEEEeC---CCCEEEcCEEEEcCCccc
Confidence 678889999998 99999999999999865 3 3 456654 777789999999998765
No 57
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.69 E-value=0.042 Score=53.04 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=46.0
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcC-EEEEcCC
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQAD-AYVAACD 109 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD-~VV~a~p 109 (254)
+..+..+|.+.+++.|++|+++++|.+|..++ + +|.||.... +| ..+.|+ .||+|+.
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~---g--~v~Gv~~~~--~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED---G--RVTGVHAAE--SGEPQLIRARRGVILASG 266 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEe--CCcEEEEEeceeEEEccC
Confidence 44688999999999999999999999999865 5 799988753 34 357785 6999766
No 58
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.63 E-value=0.047 Score=52.09 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p 109 (254)
.+.+.|.+.+++.|++|+++++|++|..++ | +|.||.+... +| ..+.||.||+++.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~---g--~V~Gv~~~~~-~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD---G--KVTGVKVKIN-GKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC---C--EEEEEEEEeC-CCeEEEEecCeEEEeCC
Confidence 578999999999999999999999998764 6 7899887532 22 3688999999987
No 59
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.63 E-value=0.048 Score=52.85 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEEcC-EEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQAD-AYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~-~~~aD-~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+++++|++|..++ + +|+||++.. .+++ .+.++ .||+|+.-
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~---g--~V~GV~~~~-~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG---G--RVVGARVID-AGGERRITARRGVVLACGG 273 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEEc-CCceEEEEeCCEEEEcCCC
Confidence 3578899999999999999999999999875 6 799998752 1333 46786 78888773
No 60
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.63 E-value=0.048 Score=52.76 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEc-CEEEEcCC
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACD 109 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~a-D~VV~a~p 109 (254)
..+..+|.+.+++.|++|+++++|++|..++ | +|.||.... +|+ .+.| ..||+|+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~--~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG---G--RVTGAVVDH--RGREVTVTARRGVVLAAG 275 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC---C--EEEEEEEEE--CCcEEEEEcCCEEEEecC
Confidence 3688999999999999999999999998754 6 899997653 343 3556 58999987
No 61
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.61 E-value=0.043 Score=53.21 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEc-CEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~a-D~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+++++|.+|..++ + +|.||.... +|+ .+.| +.||+|+..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~--~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH---G--RVIGATVVQ--GGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEec--CCeEEEEEccceEEECCCC
Confidence 3688999999999999999999999998764 6 899998752 443 4676 789999874
No 62
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.60 E-value=0.03 Score=51.73 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=47.6
Q ss_pred CcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EEEcCEEEEcCChh---hHhhc
Q 025358 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP---GIKRL 116 (254)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~-~~~aD~VV~a~p~~---~~~~L 116 (254)
+++.+.+...++|+++|++|+++++|+++..+ +|++. +|+ .+++|.+|.|+... .++.|
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----------~v~~~---~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----------GVTLK---DGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----------cEEEc---cCCeeEecCEEEEcCCCcCChhhhhc
Confidence 34578999999999999999999999999644 36675 666 59999999998853 35555
No 63
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.58 E-value=0.051 Score=50.60 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
.+.+.|.+.+++.|++|+++++|++|..+++ | ++.||++.. .+|+ .+.+|.||+|+..
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ--G--TVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCC--C--cEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 5789999999999999999999999998653 6 788988753 2343 4689999999874
No 64
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.57 E-value=0.076 Score=51.39 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=48.9
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+...|.+.+++.|++|+.++.|.+|..++ | ++.|+...+..+|+ .+.|++||+|+.-
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~---g--~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED---G--ECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 34688999999999999999999999999864 6 89998764222454 5789999999884
No 65
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.57 E-value=0.029 Score=46.07 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+.+++.|.+|+++++|+++..+++ + +.|.+. +++.+.||.||+|+...
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~----w~v~~~---~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGD--G----WTVTTR---DGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETT--T----EEEEET---TS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEecc--E----EEEEEE---ecceeeeeeEEEeeecc
Confidence 35778899999999999999999999999873 3 557665 67789999999999853
No 66
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.56 E-value=0.083 Score=49.37 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=45.2
Q ss_pred chhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++ .|++|+++++|.+|..++ + ++.||.... +|+ .+.|+.||+|+.-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~---~--~v~Gv~~~~--~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND---N--TCIGAICLK--DNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC---C--EEEEEEEEE--CCcEEEEEcCeEEEccCc
Confidence 3578888888875 599999999999998765 5 788976542 343 5889999999885
No 67
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.47 E-value=0.063 Score=52.76 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+.|.+.+++.|++|++++.|.+|..++ | +|.||...+..+|+ .+.|+.||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~---g--~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD---G--RARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 667778889999999999999999865 6 89999875322453 5789999999884
No 68
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.44 E-value=0.067 Score=49.91 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhhHhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~~~~Ll 117 (254)
.+.+.+.+.++++|++|+++++|.++..++ + ++..+... +| ..++||.||+|+.-..-..|.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~---~--~V~~v~~~---~g~~~~i~AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG---G--RVTAVWTR---NHGDIPLRARHFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEee---CCceEEEECCEEEEeCCCcccCcee
Confidence 467889999999999999999999999875 4 56665533 44 458899999998864333443
No 69
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.42 E-value=0.085 Score=51.41 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+.++.|.+|..+++ | +|.||...+..+|+ .+.|++||+|+.-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDG--G--VCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 35788999999999999999999999998753 6 89999864323454 6789999999884
No 70
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.40 E-value=0.035 Score=51.77 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCC
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~ 118 (254)
...+.+...++++++|+++++++.+.++..+.+ | ++..|.+. +|.+++||.||.-+.......++.
T Consensus 254 ~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~--G--ev~~V~l~---dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 254 GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD--G--EVSEVKLK---DGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hHHHHHHHHHHHHhcCeEEEEecceeecccCCC--C--cEEEEEec---cCCEeccCeEEEeecccccccccc
Confidence 346788899999999999999999999998774 7 78899997 899999999999988766555554
No 71
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.34 E-value=0.066 Score=51.04 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHh----CC--cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITD----KG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~----~G--g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+...+.+.+++ +| ++|+++++|+.|..++ + ..+.|.+. +| ++.||.||.++..++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~---~--~~~~V~T~---~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN---D--SLYKIHTN---RG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC---C--CeEEEEEC---CC-EEEeCEEEECcChhH
Confidence 578899999999 88 7899999999999875 3 35566653 55 689999999998765
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.33 E-value=0.08 Score=50.24 Aligned_cols=65 Identities=6% Similarity=0.107 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~--~~~Ll 117 (254)
.+...+.+.++++|++|+++++|++|..+++ + . +.+.+..+.+| ..+.||+||.++..+. +.+.+
T Consensus 179 ~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~--~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 179 ALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--G--S-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--C--e-EEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 6789999999999999999999999987642 3 2 23433211233 3689999999998754 44443
No 73
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.31 E-value=0.076 Score=49.08 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=47.5
Q ss_pred eCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+....+..+.+.+.+.+++.|++|+++++|++|..++ + ...+.+ +++.+.+|.||.|+...
T Consensus 99 p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~---~~~v~~----~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 99 PCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---N---GFGVET----SGGEYEADKVILATGGL 159 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---C---eEEEEE----CCcEEEcCEEEECCCCc
Confidence 3333445789999999999999999999999997654 2 344554 46678999999999863
No 74
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.22 E-value=0.076 Score=48.67 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~--~~~Ll 117 (254)
.+.+.|.+.+++.|++|+++++|.+|..++ + ++ .|.+. +| ++.||.||.|+..+. +.+++
T Consensus 150 ~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~---~--~~-~V~~~---~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 150 AVAEAMAELIQARGGEIRLGAEVTALDEHA---N--GV-VVRTT---QG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEecC---C--eE-EEEEC---CC-EEEeCEEEECCCcchHHHHHHh
Confidence 678899999999999999999999998765 3 33 45553 45 789999999988754 44444
No 75
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.20 E-value=0.1 Score=50.37 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+...|.+.+++.|++|+.++.|.+|..++ | ++.||......+|+ .+.|+.||+|+.-.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDD---G--RVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 577888999999999999999999999875 6 89998764323554 58899999998853
No 76
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.17 E-value=0.12 Score=50.09 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+...|.+.+++.|++|+.++.+.+|..+++ | +|.|+...+..+|+ .+.|++||+|+.-
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD--G--AVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC--C--eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 346788999999999999999999999998643 6 89999864323454 5789999999885
No 77
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.10 E-value=0.11 Score=51.09 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEecc-CCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDK-AANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~-~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~--~~~Ll 117 (254)
.+...+++..++.|++|+.+++|.+|..++ + | ++.+|++.+..+|+ .+.||.||.|+.++. +.+++
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~--g--~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDEST--G--RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCC--C--cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 678889999999999999999999998863 2 4 68888774322343 579999999999763 65555
No 78
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.09 E-value=0.074 Score=37.26 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=34.3
Q ss_pred CcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe
Q 025358 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (254)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~ 91 (254)
.++.+.+.+.++++++|++|++|+.|.+|..+++ ++. |+++
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~~~-V~~~ 78 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-----GVE-VTLE 78 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----SEE-EEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-----EEE-EEEe
Confidence 3446788899999999999999999999998873 355 8776
No 79
>PRK12839 hypothetical protein; Provisional
Probab=95.04 E-value=0.11 Score=50.37 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe-EE-EcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VV-QADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~-~~-~aD~VV~a~p~ 110 (254)
..+...|.+..++.|++|+++++|++|..+++ | +|.||.... .+|+ .+ .++.||+|+.-
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~--g--~V~GV~~~~-~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN--G--RVTGVRVQG-PDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC--C--cEEEEEEEe-CCCcEEEEeCCEEEEcCCC
Confidence 36788999999999999999999999988643 6 899998753 2343 23 45899999874
No 80
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.01 E-value=0.13 Score=50.16 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=45.0
Q ss_pred cchhHHHHHHHHHhC----CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~ 110 (254)
+..+...|.+.+++. |++|+++++|.+|..+++ | +|.||...+..+| ..+.|+.||+|+.-
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~--g--rV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG--N--RARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 335666666666543 899999999999998653 6 8999987532234 35789999999874
No 81
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.98 E-value=0.11 Score=47.66 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~--~~~Ll 117 (254)
.+...+.+.++++|++++.+++|.+|...++ + ++.+|.+. +| .+.+|.||.++..+. +.+++
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~--~~~~v~t~---~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG--G--RVIGVETT---RG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--C--cEEEEEeC---Cc-eEECCEEEECCChhhHHHHHHc
Confidence 4566788889999999999999999986532 4 56777764 55 689999888877543 44443
No 82
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.89 E-value=0.14 Score=49.60 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~ 112 (254)
..+.+.|.+.+++.|++|+.++.+.+|..++ | +|.||...+..+|+ .+.|++||+|+.-..
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN---K--KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 3578889998888999999999999999875 6 89999875322343 578999999988543
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.80 E-value=0.1 Score=49.02 Aligned_cols=54 Identities=19% Similarity=0.056 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+...|.+.++++|++|+.+++|.+|.. + + ...|.+. +| .+.||.||.|+..+.
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~---~~~v~t~---~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G---Q---PAVVRTP---DG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C---C---ceEEEeC---Cc-EEECCEEEEcccccc
Confidence 6789999999999999999999999974 2 2 2345553 55 689999999988653
No 84
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.80 E-value=2.1 Score=40.77 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~ 112 (254)
.+...+....++.|++|+.+++|.+|..++ + .++|.+.+.. | .++.||.||.|+.+++
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG---G---LWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC---C---EEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 556677788899999999999999998865 3 4567665211 3 3589999999999754
No 85
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.74 E-value=0.2 Score=48.82 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+...|.+..++.|++|+.++.+.+|..+++ | ++.||.+....+|+ .+.|+.||+|+.-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD--G--DVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC--C--eEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 35788898988999999999999999998643 6 79999774322454 5779999999885
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.71 E-value=0.13 Score=44.61 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------CCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--------~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.|.+..++.|++|+.+++|..+..+++ + ++.|+.+..+ .+...+.|+.||.|+....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~--g--~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILRED--P--RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCC--C--cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 5788899999999999999999999988663 5 6888876411 1235789999999998643
No 87
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.70 E-value=0.17 Score=49.06 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
..+.+.|.+.+++.|++|+.++.|.+|..++ | ++.|+......+|+ .+.|++||+|+.-.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED---N--QAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 4688899999999999999999999998865 6 78998753222453 58899999998854
No 88
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.64 E-value=0.094 Score=48.76 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=43.4
Q ss_pred CcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
+++.+.+.+.+.|+++|++|+++++|+++.-+ +|++. +|+++++|.+|.++..
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----------~v~~~---~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----------EVVLK---DGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----------EEEEC---CCCEEEccEEEEccCC
Confidence 34467888999999999999999999998521 25565 7889999999999774
No 89
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.61 E-value=0.13 Score=46.47 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++++.+++|++|..++ + ++ .|++. +| ++.+|.||.|+...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~--~~-~v~~~---~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE---L--LV-TVKTT---KG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC---C--eE-EEEeC---CC-EEEeCEEEEecCcc
Confidence 567888899999999999999999998765 3 33 45553 44 78999999998864
No 90
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.60 E-value=0.15 Score=48.75 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcC-EEEEcCCh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQAD-AYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD-~VV~a~p~ 110 (254)
.+...+.+.++++ |++|+++++|++|..++ | +|.||+... +| ..+.|+ .||+|+.-
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~---g--~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED---G--RVVGAVVER--GGERRRVRARRGVLLAAGG 233 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC---C--EEEEEEEEE--CCcEEEEEeCceEEEeCCC
Confidence 4677777777765 99999999999998875 6 899998753 34 357786 78888773
No 91
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.55 E-value=0.15 Score=46.53 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++.|++|+.+++|++|..++ + . ..+.+. +|+.+.+|.||.|...+. +++.+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-v~v~~~---~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD---E--G-VTVTLS---DGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---C--E-EEEEEC---CCCEEEeCEEEEcCCCChHHHHHcC
Confidence 467888899999999999999999998765 2 2 345554 788899999999988754 666553
No 92
>PRK08275 putative oxidoreductase; Provisional
Probab=94.55 E-value=0.17 Score=48.83 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+.+.|.+.+++.|++|+.++.|.+|..+++ | ++.|+...+..+|+ .+.|+.||+|+.-.
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDAD--G--RVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCC--C--eEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 5788999999999999999999999998732 6 78998754222454 57899999998853
No 93
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.54 E-value=0.13 Score=52.17 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+...+.+.+.|+++|++|++++.|++|.-+++ + .+..+.+. +|+.+++|.||.++...
T Consensus 187 ~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~--~--~~~~v~~~---dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 187 QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV--E--ARKTMRFA---DGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCC--C--ceEEEEEC---CCCEEEcCEEEECCCcc
Confidence 34567789999999999999999999976432 2 35567665 88899999999999864
No 94
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.53 E-value=0.23 Score=48.61 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+...|.+.+++.|++|+.++.+.+|..+++ | ++.||...+..+|+ .+.|++||+|+.-
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED--G--ECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC--C--EEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 46788999999999999999999999998432 6 89998764322454 5789999999863
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.50 E-value=0.17 Score=48.24 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~ 112 (254)
.+.+.|.+.+++.| ++|+++++|++|..+++ + + +.+.+.+..+|+ .+.||+||.++..++
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g--~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--G--S-WTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--C--C-EEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 57889999999987 69999999999998653 4 2 334443112343 689999999988764
No 96
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.49 E-value=0.12 Score=52.06 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.+.+.++++|++|++++.|++|.-+ + ++.+|.+. +|+.+++|.||.++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~----~--~~~~v~~~---dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA----T--KADRIRFK---DGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC----C--ceEEEEEC---CCCEEEcCEEEECCCCC
Confidence 44567888999999999999999999744 3 46778876 88899999999998863
No 97
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.48 E-value=0.23 Score=48.39 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+...|.+.+++.|++|+.++.|.+|..+++ | ++.|+...+..+|+ .+.|++||+|+.-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD--G--AVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC--C--EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 346788899988889999999999999998642 6 89999864222453 5789999999885
No 98
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.47 E-value=0.17 Score=48.65 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
..+.+.|.+.+++.|++|++++.|.+|..+++ + ++.|+......+|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~--~--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN--R--EVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC--c--EEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 45788899999999999999999999998762 4 58998754212453 58899999998853
No 99
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.47 E-value=0.15 Score=46.41 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++++++++|++|..++ + ...+.+. +|+++++|.||.++...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~---~~~v~~~---~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD---S---GIRATLD---SGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC---C---EEEEEEc---CCcEEECCEEEECcCCC
Confidence 456778899999999999999999998654 2 2346665 78899999999998853
No 100
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.43 E-value=0.14 Score=44.86 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=42.4
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC---eEEEcCEEEEcCChhhHhhc
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVPGIKRL 116 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g---~~~~aD~VV~a~p~~~~~~L 116 (254)
+...++..|.+|++++.|++|.++++ ++ +++||++.....+ ..+.++.||+++..-...+|
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~-~~--~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGD-GG--RATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETT-ST--EEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeecc-cc--ceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 44444444899999999999988632 25 8999998754344 45678999999986443333
No 101
>PRK06116 glutathione reductase; Validated
Probab=94.32 E-value=0.17 Score=47.27 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
..+.+.+.+.+++.|++|+++++|.+|..+++ + . ..+.+. +|+++++|.||+++..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--g--~-~~v~~~---~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD--G--S-LTLTLE---DGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC--c--e-EEEEEc---CCcEEEeCEEEEeeCC
Confidence 35678899999999999999999999987642 3 2 235554 7888999999999875
No 102
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.29 E-value=0.17 Score=46.23 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++.|++++.+++|+++..++ + .+ .+++. +|+++.||.||.|...+. +++.+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA---D--RV-RLRLD---DGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEEecCCCchHHHhhc
Confidence 467788888999999999999999998765 3 23 35554 678899999999988754 666553
No 103
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.22 E-value=0.22 Score=42.93 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++.|++++++++|+++..++ + ++ .+.+. +++++++||.||.|...+. +.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~--~~-~~~~~--~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD---D--RV-VVIVR--GGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---C--EE-EEEEc--CccEEEEeCEEEECCCcchHHHHhcC
Confidence 467888999999999999999999998876 3 23 33333 2456899999999998754 555443
No 104
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.19 E-value=0.23 Score=48.31 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccC-CCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKA-ANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~-~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
..+.+.|.+.+++.|++|+.++.|.+|..+++ .+| ++.|+......+|+ .+.|++||+|+.-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP--VAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC--cEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 46788999999999999999999999987640 005 79998763222454 57899999998853
No 105
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.16 E-value=0.18 Score=46.22 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLPS 119 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~~ 119 (254)
.+.+.|.+.+++.|++|+.+++|.++..+++ + +.|.+. +|+++.||.||.|...+. +++++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~----v~v~~~---~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGD--D----WLLTLA---DGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--e----EEEEEC---CCCEEEeCEEEEecCCCchhHHhcCC
Confidence 4567888888889999999999999987652 3 335554 788899999999988754 7777643
No 106
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.13 E-value=0.22 Score=45.85 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC---CeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD---KKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~---g~~~~aD~VV~a~p~~~ 112 (254)
.+...+.+.+++.|++|+.+++|.+|..++ + .+ .+.+.. .+ +..++||.||.|+.+++
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~--~~-~v~~~~-~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG---G--GV-VLTVQP-SAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EE-EEEEEc-CCCCccceEecCEEEECCCcCh
Confidence 567888999999999999999999998765 3 33 343331 11 23689999999999764
No 107
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.12 E-value=0.19 Score=46.71 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=44.3
Q ss_pred CcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+++.+.+.+.+.+++.|++|+++++|++|..+ + ++..+.. ++..+.+|.||.++...
T Consensus 189 ~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~----~--~~~~v~~----~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 189 FDKEITDVMEEELRENGVELHLNEFVKSLIGE----D--KVEGVVT----DKGEYEADVVIVATGVK 245 (444)
T ss_pred cCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC----C--cEEEEEe----CCCEEEcCEEEECcCCC
Confidence 34467788889999999999999999999643 3 4555554 45579999999998853
No 108
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.07 E-value=0.18 Score=45.63 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+...+.+.+++.|++|+.+++|++|..++ + . ..|.+. +| .+.||.||.|+..+.
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~~---~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG---D--G-VTVTTA---DG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC---C--e-EEEEeC---CC-EEEeeEEEEecCcch
Confidence 567778888889999999999999999865 3 2 345553 55 789999999998754
No 109
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.04 E-value=0.26 Score=48.49 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++.|++|+.++.+.+|..+++ | ++.|+...+..+|+ .+.|++||+|+.-
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD--G--ACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC--C--EEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 35788999999999999999999999988742 6 89998764322453 5789999999884
No 110
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.04 E-value=0.21 Score=46.52 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-Hhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR 115 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~ 115 (254)
.+-+.|.+.+++.|++|+.+++|++|..++ + ++.++.. +|+.+.||.||.|..... +.+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g--~v~~v~~----~g~~i~A~~VI~A~G~~s~l~~ 168 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD---G--KVVGVEA----DGDVIEAKTVILADGVNSILAE 168 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC---C--EEEEEEc----CCcEEECCEEEEEeCCCHHHHH
Confidence 345568888889999999999999998765 4 5655543 577899999999988643 443
No 111
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.87 E-value=0.21 Score=46.09 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+...+.+.|++. +.+| ...+|..|..++ + +|.||.+. +|+.+.+|.||.|+..
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~---~--~v~GV~~~---~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN---G--KVKGVVTK---DGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECT---T--EEEEEEET---TSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecC---C--eEEEEEeC---CCCEEecCEEEEeccc
Confidence 5677888999985 4666 478999999987 5 89999997 8999999999999887
No 112
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.85 E-value=0.23 Score=45.07 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++ .|++++.+++|++|..+++ + + .+.+. +|+++.||.||.|...+. +++.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~---~-~v~~~---~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQD--Y---V-RVTLD---NGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--e---E-EEEEC---CCCEEEeeEEEEecCCChHHHHHcC
Confidence 467788888888 4999999999999987652 2 3 35554 677899999999998764 666554
No 113
>PLN02507 glutathione reductase
Probab=93.77 E-value=0.23 Score=47.29 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=44.7
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+..+.+.+.+.|+++|++|+++++|+++..++ + . ..+.+. +|+++++|.||.++...
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~---~--~-~~v~~~---~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE---G--G-IKVITD---HGEEFVADVVLFATGRA 299 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--e-EEEEEC---CCcEEEcCEEEEeecCC
Confidence 34567788889999999999999999998654 2 2 234443 67889999999998854
No 114
>PRK06834 hypothetical protein; Provisional
Probab=93.77 E-value=0.23 Score=47.19 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+-+.|.+.+++.|++|+.+++|++|..+++ + + .+++. +|+++.||+||.|...+. +++++.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~---v-~v~~~---~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDT--G---V-DVELS---DGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--e---E-EEEEC---CCCEEEeCEEEEecCCCCCcHhhcC
Confidence 4556777888999999999999999998762 3 3 35554 677899999999988754 666654
No 115
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.76 E-value=0.3 Score=42.34 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------CCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--------~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
.+.+.|.+..++.|++|+.++.|..+..+++ + .++.||+++.. .+...++|+.||.|+.... +.+++
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~--~-~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDD--T-VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCC--C-CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 5778888999999999999999999998762 2 15889877411 0235789999999998653 55444
No 116
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.74 E-value=0.23 Score=47.16 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.+.+.+.|+++|++|++++.|++|..+++ + ...+.+. +|+.+++|.||.++...
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~--~---~~~v~~~---~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD--G---SKHVTFE---SGKTLDVDVVMMAIGRV 287 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC--c---eEEEEEc---CCCEEEcCEEEEeeCCC
Confidence 346788999999999999999999999986542 3 3456664 67789999999988753
No 117
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.74 E-value=0.19 Score=48.03 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++. |++|+.++.|.+|..++ | ++.|+.+.. .++ ..+.|+.||+|+.-
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~-~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD---G--AVAGVLAAT-AGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecC---C--EEEEEEEEe-CCeEEEEECCEEEEcCCC
Confidence 35788999988876 89999999999998764 6 799988752 122 25889999999885
No 118
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.69 E-value=1.1 Score=40.99 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+.+.|.+.+++.+ ++++.+++|+.+..+++ .+. +++.. +|++++||.+|-|=..+ .+++.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-----~v~-v~l~~--dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGD-----GVT-VTLSF--DGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-----ceE-EEEcC--CCcEEecCEEEECCCCchHHHHhcC
Confidence 56889999999888 89999999999999873 455 66642 78899999999997765 4777776
No 119
>PRK10015 oxidoreductase; Provisional
Probab=93.68 E-value=0.34 Score=45.18 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
+-..|.+.+++.|++++.+++|+.|..++ + ++.++.. ++..+.||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~--~v~~v~~----~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG---N--KVTGVQA----GDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC---C--EEEEEEe----CCeEEECCEEEEccCcch
Confidence 34457788889999999999999998765 4 5766654 566899999999988643
No 120
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=93.58 E-value=0.28 Score=44.33 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++.| ++|+.+++|++|..++ + .+ .+.+. +|+.+.+|.||.|...+. +++.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS---D--HV-ELTLD---DGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC---C--ee-EEEEC---CCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 46788888888888 9999999999998775 3 23 35554 788899999999877653 655553
No 121
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.57 E-value=0.24 Score=46.40 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=45.2
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.+.+.+.++++|++++++++|+++..++ + .+ .+.+. +|+.+++|.||.++...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD---D--GV-IVHLK---SGKKIKADCLLYANGRT 271 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC---C--eE-EEEEC---CCCEEEeCEEEEeecCC
Confidence 34577889999999999999999999998654 2 22 34444 67789999999998864
No 122
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.53 E-value=0.29 Score=46.44 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~ 112 (254)
..+.+.|.+.+++ .|++|+.++.|.+|..++ | ++.|+.+... ++ ..+.|+.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~---g--~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET---G--RVVGVWVWNR-ETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC---C--EEEEEEEEEC-CcEEEEEcCEEEECCCccc
Confidence 3578889999988 699999999999998765 5 7888877531 22 4688999999998643
No 123
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.52 E-value=0.31 Score=48.08 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
.+...|.+.+++.|++|+.++.|.+|..++ | ++.|+.+.+..+|+ .+.|+.||+|+.-
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG---K--RCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 456678888899999999999999999865 6 89998875323554 4679999999884
No 124
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.40 E-value=0.36 Score=47.24 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+...|.+.+++.| ++|+.++.|.+|..++ + ++.||......+|+ .+.|+.||+|+...
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD---N--RIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 46777888888876 9999999999998765 5 78898653222443 68899999999853
No 125
>PRK06184 hypothetical protein; Provisional
Probab=93.38 E-value=0.44 Score=45.25 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+-+.|.+.+++.|++|+++++|.+|..+++ + +. +.+....+++++.||+||.|...+. +++.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~---v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--G---VT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--c---EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 456788888899999999999999987762 3 32 3342223667899999999988764 666664
No 126
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.36 E-value=0.41 Score=45.69 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~ 112 (254)
.+.+.+.+.+++ .|++|+++++|..|..+++ + .+ .+.+..+.+|+ +++||.||.++..++
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~--~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--G--GW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--C--CE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 578889898865 5899999999999987732 3 22 33321112342 689999999999765
No 127
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.35 E-value=0.31 Score=45.71 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC---eEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g---~~~~aD~VV~a~p~~~ 112 (254)
..+.+.+.+.++++|++|+++++|++|..++ + .+ .+.+. +| +.+++|.||.++....
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~--~v-~v~~~---~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD---D--GV-TVTLE---DGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EE-EEEEE---eCCeeEEEEeCEEEEeeCCcc
Confidence 3567888999999999999999999998654 2 22 34444 44 6789999999987543
No 128
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.34 E-value=0.3 Score=46.08 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+..+.+.|.+.+++.|++++.+ .+..|..++ | ++.|+.. +|+.+.||.||+|+.-.
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~---g--~v~Gv~~----~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN---G--KAYGVFL----DGELLKFDATVIATGGF 174 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC---C--EEEEEEE----CCEEEEeCeEEECCCcC
Confidence 3468899999999999999876 899987754 5 7888876 56789999999998864
No 129
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.33 E-value=0.34 Score=45.49 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG 112 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~ 112 (254)
+..+.+.+.+.|+++|+++++++.|++|..+++ + ...+.+. +| +.+++|.||.++....
T Consensus 206 d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~--~---~~~v~~~---~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 206 DSMISETITEEYEKEGINVHKLSKPVKVEKTVE--G---KLVIHFE---DGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC--c---eEEEEEC---CCcEEEEcCEEEEeeCCCc
Confidence 345678899999999999999999999986542 2 2345554 56 5799999999988643
No 130
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.32 E-value=0.36 Score=45.14 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|++++++++|++|..++ + ++. +.+. +| +.+++|.||.++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v~-v~~~---~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND---D--QVV-YENK---GGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EEE-EEEe---CCcEEEEEeCEEEEecCCc
Confidence 3567888999999999999999999998765 3 333 4443 45 579999999998753
No 131
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.31 E-value=0.2 Score=49.37 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.+.+.+++ |++|+.+++|++|..++ + ++. |.+. +|..++||.||.|+..+.
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~---~--~~~-v~t~---~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLERED---D--GWQ-LDFA---GGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeC---C--EEE-EEEC---CCcEEECCEEEECCCCCc
Confidence 678899999999 99999999999998875 3 343 5543 676778999999988764
No 132
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.29 E-value=0.28 Score=45.43 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.++++|++++++++|.+|..+ + ++ +.+. +|+.+++|.+|.+++..
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~--~~--v~~~---~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE----E--RV--KVFT---SGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC----C--CE--EEEc---CCCEEEeCEEEECCCcc
Confidence 346777889999999999999999999754 3 33 4454 78889999999998853
No 133
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.20 E-value=0.31 Score=44.76 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++|+++++|++|.. + + . ..+.+. +|+.+++|.||.++...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~---~--~-~~v~l~---~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G---E--K-VELTLQ---SGETLQADVVIYGIGIS 240 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C---C--E-EEEEEC---CCCEEECCEEEECCCCC
Confidence 3456788888999999999999999975 3 2 2 346665 78899999999998853
No 134
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.20 E-value=0.44 Score=45.50 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~ 112 (254)
.+...+++..++.|++|+.+++|++|..++ + .++|.+.+..+| ..+.||.||.|+.++.
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN---G---LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---C---EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 556677888899999999999999998765 3 356666422234 3689999999999754
No 135
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.18 E-value=0.42 Score=46.22 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=47.3
Q ss_pred cchhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+.+.|.+.++++ |++|++++.|.+|..+++ +| ++.||.... +|+ .+.|+.||+|+.-
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~-~g--~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE-TG--RCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCC-CC--EEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 346888999988765 999999999999998631 25 799987653 454 4789999999885
No 136
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.15 E-value=0.37 Score=46.43 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee----cCCC-eEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----ATDK-KVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~----~~~g-~~~~aD~VV~a~p~~ 111 (254)
..+.+.|.+.+++.|++|+.++.|.+|..+++ | ++.|+.+.. ..+| ..+.|+.||+|+.-.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT--G--AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC--C--eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 35788999999999999999999999998753 6 799987641 1233 468899999998853
No 137
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.13 E-value=0.33 Score=45.41 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+.+++.|++++++++|++|...++ + ..+.+. +|+.+++|.||.++...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~----~~v~~~---~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDD--G----LKVTLS---HGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e----EEEEEc---CCcEeecCEEEEeeCCC
Confidence 45667888999999999999999999986542 2 235454 67889999999998853
No 138
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.11 E-value=0.4 Score=38.17 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHh--CCcEEE-cCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITD--KGGRFH-LRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~--~Gg~i~-~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
++-+.+.+.+.++. .|++|. .+.+|..|...++ + ..+.+. +|..+.||+||+|+..
T Consensus 97 G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~--~----~~v~~~---~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 97 GEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD--G----YRVVTA---DGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC--c----EEEEEC---CCCEEEeCEEEECCCC
Confidence 33334444444433 466543 6779999998873 4 456565 8899999999999864
No 139
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.09 E-value=0.41 Score=44.92 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|++++++++|++|..++ + ...+.+..+.+++++++|.||.++...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~---~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG---G---GKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC---C---EEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 3567888999999999999999999998754 2 233444321234689999999998753
No 140
>PRK06370 mercuric reductase; Validated
Probab=93.03 E-value=0.44 Score=44.74 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++|+++++|.+|..+++ + ..+.+..+.+++.+++|.||.++...
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~----~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGD--G----IAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E----EEEEEEeCCCceEEEeCEEEECcCCC
Confidence 4677889999999999999999999987642 2 23333211245679999999998854
No 141
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.98 E-value=0.4 Score=46.21 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHh---C-CcEEEcCceeeEEEeccCCCCcceEEEEEEee-cC-------------CC-eEEEcCEEEEcC
Q 025358 48 YLSGPIRKYITD---K-GGRFHLRWGCREILYDKAANAETYVKGLAMSK-AT-------------DK-KVVQADAYVAAC 108 (254)
Q Consensus 48 ~l~~~l~~~l~~---~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-~~-------------~g-~~~~aD~VV~a~ 108 (254)
.+.++|.+.+++ . |++|++++++++|..++ | +|.||.... .. ++ ..+.|+.||+|+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~---g--~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILAT 223 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD---G--AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTS 223 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC---C--EEEEEEEEecccccccccccccccccceEEEecCEEEEeC
Confidence 467787777652 3 59999999999999864 6 899998521 00 11 367899999998
Q ss_pred C
Q 025358 109 D 109 (254)
Q Consensus 109 p 109 (254)
.
T Consensus 224 G 224 (549)
T PRK12834 224 G 224 (549)
T ss_pred C
Confidence 7
No 142
>PRK07190 hypothetical protein; Provisional
Probab=92.98 E-value=0.43 Score=45.35 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+-+.|.+.+++.|++|+++++|++|..+++ + +. +.+. +|+++.|++||.|...+. +++.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~---v~-v~~~---~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--G---CL-TTLS---NGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e---eE-EEEC---CCcEEEeCEEEECCCCCHHHHHHcC
Confidence 344566778889999999999999998763 3 32 3443 678899999999988754 666654
No 143
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.76 E-value=0.37 Score=45.40 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.|+++|++|+++++|.+|..++ + ++ .+.+. +|+.+++|.||.++...
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~~-~v~~~---~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG---D--GV-VVTLT---DGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC---C--EE-EEEEC---CCcEEEecEEEEeecCC
Confidence 467788899999999999999999997654 2 23 35554 68889999999997753
No 144
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.66 E-value=0.59 Score=45.88 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHhC--------C-----cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDK--------G-----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~--------G-----g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++. | ++|+.++.|.+|..++ | ++.|+......+|+ .+.|++||+|+.-
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG---G--RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 35788899888877 7 9999999999999864 6 78898753222454 5789999999985
No 145
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=92.40 E-value=0.48 Score=44.63 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+-|.+..+++|++++.++ |..+..+++ | .|.+|++. +|++++||.||=|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~--g--~i~~v~~~---~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED--G--RITAVRLD---DGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT--S--EEEEEEET---TSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC--C--CEEEEEEC---CCCEEEEeEEEECCCccc
Confidence 567888999999999999885 888888764 7 78899986 899999999999988754
No 146
>PRK06185 hypothetical protein; Provisional
Probab=92.38 E-value=0.79 Score=41.97 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++. |++++.+++|.++..++ + ++.+|.+.. .+| .++.||.||.|...+. +++.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~---~--~v~~v~~~~-~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG---G--RVTGVRART-PDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC---C--EEEEEEEEc-CCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4566777777665 89999999999999876 4 677776642 245 4789999999988754 666654
No 147
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.38 E-value=0.69 Score=44.90 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+.+.|.+.+++ .|++|+.++.|.+|..++ | ++.|+...+..+|+ .+.|+.||+|+.-.
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN---G--VFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 477888888876 689999999999998865 6 78998764222454 57899999998853
No 148
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.35 E-value=0.37 Score=43.51 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+.++++|++++++++|++|. + + ++.+. +|+++++|.||.+++..
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~---~-----~v~~~---~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D---G-----ALILA---DGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C---C-----eEEeC---CCCEEecCEEEEccCCC
Confidence 3467788899999999999999999884 2 2 35565 78899999999998853
No 149
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.29 E-value=0.53 Score=42.86 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++. |++++.+++|+++..++ + . +.|.+. +|++++||.||.|...+. +++.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD---D--G-WELTLA---DGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---C--e-EEEEEC---CCCEEEeCEEEEeCCCCchhHHHcC
Confidence 3556777777777 99999999999998765 2 2 345554 777899999999988754 666654
No 150
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.27 E-value=0.5 Score=45.01 Aligned_cols=58 Identities=17% Similarity=0.038 Sum_probs=45.8
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
+..+.+.+.+.|+++|+++++++.|+++...+ + . ..+.+. +|+.+.+|.||.++....
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~---~--~-~~v~~~---~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD---D--K-IKVLFS---DGTTELFDTVLYATGRKP 278 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEEeeCCCC
Confidence 33567889999999999999999999998654 2 2 345554 688899999999988644
No 151
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.12 E-value=0.61 Score=43.94 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|++|+++++|++|..+++ + ++..+... +| +.+++|.||.++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~--~--~~~~~~~~---~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD--G--GVLIVAEH---NGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC--C--CEEEEEEe---CCceEEEEeCEEEEeeCCc
Confidence 35678888999999999999999999986211 2 34334333 45 468999999998864
No 152
>PRK07045 putative monooxygenase; Reviewed
Probab=92.07 E-value=0.65 Score=42.34 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-Hhhc
Q 025358 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (254)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~L 116 (254)
.+.+.|.+.+.. .|++++++++|+.|..+++ + .++.|.+. +|+++.+|.||.|-.... +++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~--~~~~v~~~---~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD--G--TVTSVTLS---DGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC--C--cEEEEEeC---CCCEEECCEEEECCCCChHHHHH
Confidence 355667777654 5799999999999998763 5 45567765 788999999999988754 7774
No 153
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.03 E-value=0.71 Score=43.50 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~--~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.|++.|++|+++++|++|..+++ + + .+.+.. +++++.+++|.||.++...
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~---v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGAD--G---V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--e---E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 4678889999999999999999999986542 2 2 233321 1234679999999998864
No 154
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.01 E-value=0.59 Score=40.50 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|+++++ ++|.+|..++ + -..+.+. +|+++.+|++|+|+...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~---~~~v~~~---~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---R---PFKVKTG---DGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---C---eeEEEeC---CCCEEEeCEEEECCCCC
Confidence 35778899999999999999 8999998765 2 2345554 67889999999999864
No 155
>PRK10262 thioredoxin reductase; Provisional
Probab=91.69 E-value=0.46 Score=42.22 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC---CCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---DKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~---~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|+++++++.|++|.-++ + ++.+|++.... +++++++|.||.++...
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~---~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ---M--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC---c--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 356788888999999999999999997554 3 46677775211 12478999999998753
No 156
>PRK14694 putative mercuric reductase; Provisional
Probab=91.66 E-value=0.67 Score=43.66 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|++|+++++|++|..++ + ...+.. ++..+++|.||.++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~---~---~~~v~~----~~~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG---R---EFILET----NAGTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C---EEEEEE----CCCEEEeCEEEEccCCC
Confidence 3578889999999999999999999998654 3 223433 34469999999998754
No 157
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.57 E-value=0.81 Score=43.02 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.|+++|++|+++++|+++.-++ + . ..+.+.. .+| +++++|.||.++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~--~-~~v~~~~-~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNG---S--K-VTVTVSK-KDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeC---C--e-EEEEEEe-cCCCeEEEEeCEEEECcCcc
Confidence 567888999999999999999999997654 2 2 2344421 134 478999999998853
No 158
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=91.46 E-value=0.63 Score=42.66 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=41.2
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEE-EeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREI-LYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i-~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
..+.+|.. ++++.|. +..|.++ ++++|++| ...++ +. ..+.|....+.+...-.+|+||.|+|.+.
T Consensus 121 ~sV~GGN~--qI~~~ll---~~S~A~v-l~~~Vt~I~~~~~~--~~-~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 121 WSVEGGNW--QIFEGLL---EASGANV-LNTTVTSITRRSSD--GY-SLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred eEecCCHH--HHHHHHH---HHccCcE-ecceeEEEEeccCC--Cc-eeEEEEEecCCCCccccCCEEEECCCccc
Confidence 44445544 5665554 5689999 99999999 34432 31 34455544222333345799999999963
No 159
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=91.31 E-value=0.75 Score=41.74 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+.+.|.+.+++.| ++++ +++|++|..++ + . ..|.+. +|+++.||.||.|...+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP---D--A-ATLTLA---DGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC---C--e-EEEEEC---CCCEEEeeEEEEeCCCCchHHHhcC
Confidence 56788889999988 8999 99999998765 2 2 346554 67789999999998875 3666553
No 160
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.30 E-value=1.1 Score=42.22 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEEcCEEEEcCChhhHh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPGIK 114 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~--~~~g~~~~aD~VV~a~p~~~~~ 114 (254)
.|.+.|.+.++++ |+++++|++|+.|...+| | -+.|.+.+ +.+...+.|+.|+..+.-+++.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g---~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD--G---RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC--C---CEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 5788999999998 999999999999999875 5 24555542 1244678999999998877654
No 161
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.24 E-value=0.84 Score=43.34 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+..+.+.+.+.|+++|++|++++.++++...+ + . ..+++...++++++++|.||.++...
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~-~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE---A--K-VKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC---C--e-EEEEEecCCcceEEEeCEEEEEecCC
Confidence 34567888999999999999999999997654 2 2 33555411112479999999998864
No 162
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.23 E-value=2.9 Score=39.26 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCCC-----------eEEEcCEEEEcCCh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDV 110 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~~g-----------~~~~aD~VV~a~p~ 110 (254)
....+.+++.|++|++++.+.+|.-+++ | ++.+|.+.. +.+| +.+++|.||.++..
T Consensus 313 ~~~~~~l~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 313 VEEIAHAEEEGVKFHFLCQPVEIIGDEE--G--NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHHHhCCCEEEeccCcEEEEEcCC--C--eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 3445778999999999999999976542 6 788887641 0122 36899999999875
No 163
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.17 E-value=0.96 Score=39.14 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEEcCEEEEcCChh
Q 025358 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~--~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.+.++++ |++++++++|++|..+ + ++.++.+.+ +.+++++++|.+|.++...
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~----~--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGD----N--KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEcc----C--cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 45677888888 9999999999999754 3 466676642 1234679999999998853
No 164
>PRK07588 hypothetical protein; Provisional
Probab=91.13 E-value=0.67 Score=42.30 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
|.+.|.+.++ .|++|+++++|++|+.++ + .+ .|++. +|+.+++|.||-|-..+. +++.+
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR---D--GV-RVTFE---RGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC---C--eE-EEEEC---CCCEEEeCEEEECCCCCccchhhc
Confidence 4455555554 479999999999998775 3 33 35554 788899999999988754 66643
No 165
>PRK09897 hypothetical protein; Provisional
Probab=91.10 E-value=0.88 Score=43.81 Aligned_cols=54 Identities=13% Similarity=-0.098 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhCC--cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 49 LSGPIRKYITDKG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 49 l~~~l~~~l~~~G--g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
..+.+.+.+++.| ++++.+++|+.|..++ + . ..+.+. .+|+.+.||.||+|+..
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~--g-~~V~t~--~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN---A--G-VMLATN--QDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---C--E-EEEEEC--CCCeEEEcCEEEECCCC
Confidence 4555666667777 7899999999998875 3 2 234442 24578899999999885
No 166
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.10 E-value=0.23 Score=48.96 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+.|.+.++++|.+|++++..++|.-+ + ++.++.++ +|..+.||.||.++..
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g~----~--~~~~vr~~---DG~~i~ad~VV~a~GI 241 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVGE----D--KVEGVRFA---DGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhcC----c--ceeeEeec---CCCcccceeEEEeccc
Confidence 456888999999999999999999864 3 78999998 9999999999999875
No 167
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.08 E-value=0.85 Score=43.00 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=49.0
Q ss_pred CcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh-hhHhhc
Q 025358 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV-PGIKRL 116 (254)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~-~~~~~L 116 (254)
..+.+.+.+.+.|++.|++|+++++|++++..+ + . ..+.+. +|+ +++||.|+.|+.= +....|
T Consensus 212 ~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~---~--~-v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 212 EDPEISKELTKQLEKGGVKILLNTKVTAVEKKD---D--G-VLVTLE---DGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred CCHHHHHHHHHHHHhCCeEEEccceEEEEEecC---C--e-EEEEEe---cCCCCEEEeeEEEEccCCccCCCCC
Confidence 344789999999999899999999999998775 2 2 456665 454 7889999999883 445544
No 168
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.04 E-value=1.1 Score=43.70 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHhCC----cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDKG----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+...|.+.+++.| ++|+.++.+.++..+++ | +|.||...+..+|+ .+.|++||+|+.-
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE--G--VCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC--C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 3457778888777654 78999999999998643 6 89999875322343 5789999999885
No 169
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.04 E-value=0.91 Score=42.84 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.++++|++|+++++|++|..++ + .+ .+.+.. .+| +.+++|.||.++...
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG---K--GV-SVAYTD-ADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC---C--EE-EEEEEe-CCCceeEEEcCEEEEccCCc
Confidence 3567888999999999999999999998664 2 22 354431 123 468999999998853
No 170
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.02 E-value=0.64 Score=43.42 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=42.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+.++++|++++++++|++|. + . .+.+. +|+.+++|.||.+++..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~---~-----~v~~~---~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN--G---N-----EVTFK---SGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe--C---C-----EEEEC---CCCEEEeCEEEECcCCC
Confidence 3567789999999999999999999994 2 1 25554 67789999999998853
No 171
>PRK08071 L-aspartate oxidase; Provisional
Probab=90.98 E-value=0.62 Score=44.50 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
.+.+.|.+.++ .|++|+.++.|.+|..++ | ++.|+...+ .+|+ .+.|+.||+|+.-
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN---G--RCIGVLTKD-SEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC---C--EEEEEEEEE-CCCcEEEEEcCeEEEecCC
Confidence 47778888776 699999999999998765 6 789987753 2343 6789999999875
No 172
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.97 E-value=0.95 Score=43.40 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh--HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~--~~~Ll 117 (254)
+|.-..++...++|++++..++|+++..++ | ++||.+.+..+|+ .+.|+.||-|+.++. +.+.+
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~---~---v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG---G---VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC---C---EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 566777888899999999999999999886 3 8899987444454 477999999999864 55544
No 173
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.97 E-value=0.65 Score=41.87 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~ 118 (254)
.+...+.+.+.++ |++|+.+++|.+|.. + +|.+. +| .+.||.||.|+..+.- .|++
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~-----~-----~v~t~---~g-~i~a~~VV~A~G~~s~-~l~~ 202 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVET-----G-----TVRTS---RG-DVHADQVFVCPGADFE-TLFP 202 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEec-----C-----eEEeC---CC-cEEeCEEEECCCCChh-hhCc
Confidence 5677888888876 999999999999952 1 35553 45 4689999999997642 3444
No 174
>PRK09077 L-aspartate oxidase; Provisional
Probab=90.97 E-value=1.4 Score=42.44 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHhC-CcEEEcCceeeEEEeccC---CCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKA---ANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~---~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
..+...|.+.+++. |++|+.++.|.++..+++ .+| ++.||...+..+|+ .+.|+.||+|+.-.
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR--RVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC--EEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 35677788888765 899999999999987530 015 79999875322344 57899999998853
No 175
>PRK09126 hypothetical protein; Provisional
Probab=90.89 E-value=0.91 Score=41.29 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=43.9
Q ss_pred hHHHHHHHHH-hCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 49 LSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 49 l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
+.+.+.+.+. ..|++|+.+++|+++..++ + . ..|.+. +|++++||.||.|...+. +++.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD---D--G-AQVTLA---NGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---C--e-EEEEEc---CCCEEEeCEEEEeCCCCchhhHhc
Confidence 3445555553 4699999999999998765 3 2 346665 788999999999988754 66655
No 176
>PRK08163 salicylate hydroxylase; Provisional
Probab=90.75 E-value=1 Score=40.99 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
+.+.|.+.+++.| ++++++++|.++..++ + .+ .+.+. +|+++.||.||.|...+. .++.+
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---D--GV-TVFDQ---QGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC---C--ce-EEEEc---CCCEEecCEEEECCCcChHHHhhc
Confidence 5667788887775 8999999999998765 3 23 35554 788899999999988754 54433
No 177
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=90.74 E-value=0.94 Score=40.95 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCC
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPS 119 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~ 119 (254)
+.-...++..+++.||.||-|..|..+...+. ++ ..++|.+. +|..+.|+.+|.|+.++.. +|||.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e-~~--~~v~V~Tt---~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDE-EG--NHVSVQTT---DGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccC-CC--ceeEEEec---cCCeeecceEEEEecHHHH-hhcCc
Confidence 35578899999999999999999999996542 23 34566664 8988999999999998865 46664
No 178
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=90.66 E-value=0.99 Score=42.38 Aligned_cols=54 Identities=9% Similarity=0.081 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.++++|++|+++++|++|..++ + .+.+.. +| +++++|.||.++...
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~---~-----~v~~~~--~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYK---K-----QALFEY--EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcC---C-----EEEEEE--CCceEEEEeCEEEEecCCc
Confidence 567788999999999999999999997553 2 133321 33 468999999998853
No 179
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=90.63 E-value=1.4 Score=42.83 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=46.4
Q ss_pred chhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~ 110 (254)
..+...|.+.+++. |++++.++.|.+|..++ | ++.|+...+..+| ..+.|++||+|+.-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD---G--RVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 45788888887764 79999999999999875 6 7999875422245 46789999999885
No 180
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.62 E-value=1.4 Score=40.42 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.|.+.|.+.+.+. |++++++++|+++..++ + .+ .+++....+++.++||.||-|=..++ +++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~--~v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG---N--SI-TATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC---C--ce-EEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 4567777777664 79999999999998765 3 22 34443223556899999999988765 777764
No 181
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=90.60 E-value=0.99 Score=39.77 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh-HhhcCCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLPS 119 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~-~~~Ll~~ 119 (254)
.+-+.|.+.+++.|++|+++++|..+..+++ .+...... ..+| ++++||.||-|-..+. +++.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-----~~~~~~~~-~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDD-----GVTVVVRD-GEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETT-----EEEEEEEE-TCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHhhhhhhhhhhhhheeeeeccccccccc-----cccccccc-ccCCceeEEEEeeeecccCcccchhhhccc
Confidence 4677888999999999999999999987763 34433332 2234 3689999999988764 7776653
No 182
>PTZ00058 glutathione reductase; Provisional
Probab=90.52 E-value=1.1 Score=43.39 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=43.5
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+.|+++|++|++++.|.+|.-+++ + ++ .+.+. .+++.+++|.|+.++...
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~--~--~v-~v~~~--~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVKE--K--NL-TIYLS--DGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--C--cE-EEEEC--CCCEEEECCEEEECcCCC
Confidence 345678899999999999999999999985431 2 22 23332 245679999999998853
No 183
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.44 E-value=1.2 Score=40.92 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+.+-|++..++.|++++.+++|..+..+++ + .+.++ .. ++.++.|+.||.|..+. .+.+-+.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~--~~~~~-~~---~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDD--G--VVVGV-RA---GDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--c--EEEEE-Ec---CCEEEEcCEEEECCCcchHHHHHhC
Confidence 4556688899999999999999999999884 5 34333 32 45789999999998875 4555443
No 184
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=90.43 E-value=0.08 Score=49.38 Aligned_cols=65 Identities=12% Similarity=0.266 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCC
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~ 118 (254)
+-.-+.+.+++.|++|++++.|..+..++ + +|.+|++.+..+..++.||.||=|+.--.+..+..
T Consensus 92 ~~~~l~~~l~e~gv~v~~~t~v~~v~~~~---~--~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 92 FKAVLDEMLAEAGVEVLLGTRVVDVIRDG---G--RITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---c--ccccccccccccccccccccccccccccccccccc
Confidence 34456666788999999999999999986 5 79999986322356789999999988655666544
No 185
>PRK08244 hypothetical protein; Provisional
Probab=90.43 E-value=1.4 Score=41.66 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+-+.|.+.+++.|++|+.+++|.++..+++ + + .+.+.. .+| ++++||+||-|-..+. +++++.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~---v-~v~~~~-~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--G---V-EVVVRG-PDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--e---E-EEEEEe-CCccEEEEeCEEEECCCCChHHHHhcC
Confidence 3456677788889999999999999987762 3 3 344431 235 5799999999988754 666664
No 186
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=90.37 E-value=1.3 Score=43.16 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
.+...|.+.+.+. |++++.++.|.+|..++ | ++.|+...+..+| ..+.|+.||+|+.-.
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDD---G--HVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 5677777777765 79999999999999865 6 7889875322245 468899999998853
No 187
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.35 E-value=1.3 Score=41.19 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.++++|++++++++|.+|..++ + ++ .+. . +|+++++|.||.++...
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~---~--~v-~v~-~---~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDG---D--QV-LVV-T---EDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecC---C--EE-EEE-E---CCeEEEcCEEEEeeCCC
Confidence 456777888999999999999999998654 3 22 122 2 57789999999997753
No 188
>PLN02815 L-aspartate oxidase
Probab=90.30 E-value=1.1 Score=43.87 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
..+.+.|.+.+++. |++|+.++.+.+|..+++ ++..++.|+...+..+|+ .+.|++||+|+.-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~-g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQD-GGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecC-CCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 35778888888776 899999999999998642 120027898764323454 5689999999884
No 189
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=90.29 E-value=0.96 Score=43.66 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeec--CCCeEEEcCEEEEcCCh-hhHhhcCC
Q 025358 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDV-PGIKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--~~g~~~~aD~VV~a~p~-~~~~~Ll~ 118 (254)
+...+.+.+ +.| .+|++++.|.+|..+++.++ +|.+|.+.+. .+..++.|+.||+|+.. +..+-||.
T Consensus 216 ~~~~~~~~~-~~~n~~l~~~a~v~~i~~d~~~~~--~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 216 FDLQPNDDA-PSERFTLLTNHRCTRLVRNETNES--EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred hhhhhhhhc-cCCCEEEEcCCEEEEEEeCCCCCc--eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 444443333 455 89999999999999763013 6888877632 22245789999999885 66555554
No 190
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=90.21 E-value=1.1 Score=41.24 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+.+.|.+.+++. |++|+++++|++|..+++ + ..|.+. +|++++||.||.|-..+. +++.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~----~~v~~~---~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES--E----AWLTLD---NGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--e----EEEEEC---CCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445667777664 799999999999987652 2 346665 788999999999988754 666654
No 191
>PRK14727 putative mercuric reductase; Provisional
Probab=90.13 E-value=1.2 Score=42.18 Aligned_cols=56 Identities=9% Similarity=-0.007 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
+.+.+.+.+.+++.|++|+++++|+++..++ + . ..+.. ++.++.+|.||.++....
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~---~--~-~~v~~----~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD---N--G-FVLTT----GHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC---C--E-EEEEE----cCCeEEeCEEEEccCCCC
Confidence 3567788999999999999999999998654 2 2 22333 234689999999988643
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.08 E-value=1.2 Score=42.62 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++++++++|.+|..++ + -..+.+. +|+.+.+|.+|.|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~---~~~v~~~---~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETED---G---LIVVTLE---SGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEeCEEEECCCCC
Confidence 577889999999999999999999998765 2 2345554 67889999999999864
No 193
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.94 E-value=1.4 Score=41.32 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee----------------cCCCeEEEcCEEEEcCChh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~----------------~~~g~~~~aD~VV~a~p~~ 111 (254)
....+.+++.|++|++++.+.+|.-++ + ++.+|++.. +++++++++|.||.++...
T Consensus 315 ~~~~~~~~~~GV~i~~~~~v~~i~~~~---~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 386 (457)
T PRK11749 315 EEEVEHAKEEGVEFEWLAAPVEILGDE---G--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQT 386 (457)
T ss_pred HHHHHHHHHCCCEEEecCCcEEEEecC---C--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCC
Confidence 345678899999999999999998654 3 345666531 1234579999999998753
No 194
>PRK08013 oxidoreductase; Provisional
Probab=89.76 E-value=1.2 Score=40.92 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+-+.|.+.+++. |++++++++|.+|+.+++ + +.+.+. +|++++||.||-|-..+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~----v~v~~~---~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGEN--E----AFLTLK---DGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e----EEEEEc---CCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 3456677777775 799999999999987652 3 345555 78899999999998875 4777664
No 195
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.56 E-value=1.3 Score=40.59 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+.+. |++++++++|++|..+++ + ..|.+..+.+..+++||.||.|-..+. +++.+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~----~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQD--A----ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e----eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 3566777777765 799999999999987652 2 235554211124689999999988754 666554
No 196
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.53 E-value=1.3 Score=41.21 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.++++|++++++++|++|..++ + ++ .+... +| .+.+|.||.++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~---~--~v-~v~~~---~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE---N--QV-QVHSE---HA-QLAVDALLIASGRQ 253 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--EE-EEEEc---CC-eEEeCEEEEeecCC
Confidence 3567888899999999999999999998654 3 22 23332 34 58899999997753
No 197
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=89.48 E-value=1.3 Score=46.80 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhC---CcEEEcCceeeEEEeccC--CCC--cceEEEEEEeec--CCCe--EEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDK---GGRFHLRWGCREILYDKA--ANA--ETYVKGLAMSKA--TDKK--VVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~---Gg~i~~~~~V~~i~~~~~--~~g--~~~v~gv~l~~~--~~g~--~~~aD~VV~a~p~ 110 (254)
.+...|.+.+++. |++|++++++++|..+++ ++| ..+|+||...+. .+|+ .+.|++||+|+.-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 4677888888764 999999999999998641 001 016899987632 1343 5789999999874
No 198
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=89.43 E-value=1.5 Score=39.79 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=44.0
Q ss_pred hHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 49 LSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+-+.+.+.+++ .|++++.+++|+++..++ + .+ .|++. +|+.+.+|.||.|...+. +++.+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ---G--SV-RVTLD---DGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---C--eE-EEEEC---CCCEEEeCEEEEecCCChhhHHhhC
Confidence 34566666666 479999999999998765 2 23 36554 677899999999988754 555543
No 199
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=89.38 E-value=0.81 Score=43.86 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred HhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe---EEEcCEEEEcCCh
Q 025358 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK---VVQADAYVAACDV 110 (254)
Q Consensus 58 ~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~---~~~aD~VV~a~p~ 110 (254)
++.|.+|++++.|++|.+++ + +++||++.. +|+ .+.++.||++...
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~---~--ra~GV~~~~--~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG---N--RATGVEFKK--GGRKEHTEANKEVILSAGA 253 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC---C--eEEEEEEEe--CCcEEEEEEeeeEEEccCC
Confidence 35579999999999999985 5 899998863 222 3579999999886
No 200
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.37 E-value=1.3 Score=40.38 Aligned_cols=60 Identities=5% Similarity=0.024 Sum_probs=44.6
Q ss_pred HHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
-..+.+.+++. |++++.+++|++++.+++ + + .|.+. +|++++||.||.|-..+. +++.+.
T Consensus 113 ~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~---~-~v~~~---~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 113 QLGLWQQFAQYPNLTLMCPEKLADLEFSAE--G---N-RVTLE---SGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHhCCCeEEECCCceeEEEEcCC--e---E-EEEEC---CCCEEEeeEEEEecCCCchhHHhcC
Confidence 33455655554 689999999999998763 3 3 46665 788999999999988765 666653
No 201
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.35 E-value=1.3 Score=40.32 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.+.|.+.+++.|+..+++++|.++..+++ + + .|.+. +|++++||.||.|...+. +++.+.
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~--~---~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRED--E---V-TVTLA---DGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCC--e---E-EEEEC---CCCEEEEeEEEEecCCCchhHHhcC
Confidence 4577888888888765699999999987762 3 3 35554 788899999999988754 666554
No 202
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.96 E-value=1.6 Score=41.15 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=39.9
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec-----------CCCeEEEcCEEEEcCCh
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----------TDKKVVQADAYVAACDV 110 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~-----------~~g~~~~aD~VV~a~p~ 110 (254)
..+.+++.|++|++++.+.+|.-++ | ++.+|.+... ++.+++++|.||.++..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~---g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN---G--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC---C--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3567788999999999999997543 5 7888775410 11257899999999874
No 203
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.88 E-value=2.1 Score=40.38 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec-----------------CCCeEEEcCEEEEcCCh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----------------TDKKVVQADAYVAACDV 110 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~-----------------~~g~~~~aD~VV~a~p~ 110 (254)
...+.+++.|++|++++.+.+|..+++ | ++.+|++... ++...+++|.||.++..
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDED--G--RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCC--C--eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 345667889999999999999976542 5 7888776310 11246899999999874
No 204
>PLN02697 lycopene epsilon cyclase
Probab=88.65 E-value=1.8 Score=41.71 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.|.+.|.+.+.+.|+++ ++++|++|..+++ + +..+.+. +|.++.||.||.|..+..
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~---~~vv~~~---dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASD--G---LRLVACE---DGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--c---EEEEEEc---CCcEEECCEEEECCCcCh
Confidence 56688888889999998 7889999987652 3 3334444 788899999999999866
No 205
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=88.61 E-value=1.5 Score=39.69 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEE--EEEeecCCCeEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG--LAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~g--v~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
..+.+.+.+.+++.|+++++++.+.+|...+ + ++.. +... ++..+++|.++.+++.
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~---~--~~~~~~~~~~---~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG---N--TLVVERVVGI---DGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc---C--cceeeEEEEe---CCcEEEeeEEEEeecc
Confidence 3578999999999999999999999999876 2 3333 3443 7889999999999875
No 206
>PRK06126 hypothetical protein; Provisional
Probab=88.51 E-value=2.2 Score=40.88 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh-HhhcCC
Q 025358 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+-+.|.+.+++. |++|+++++|++|..++ + .+. +++.+..+|+ +++||+||.|-..+. +++.+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA---D--GVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC---C--eEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 444566677664 79999999999998876 3 344 4443212453 689999999988754 776664
No 207
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.46 E-value=1.9 Score=41.16 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++++++++|.+|..++ + ...|.+. +|+.+.+|.||.|+...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~---~~~V~~~---~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA---G---LIEVELA---NGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEcCEEEECCCCC
Confidence 578899999999999999999999998865 2 2345554 67789999999999863
No 208
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=88.45 E-value=1.4 Score=43.03 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+...|.+.+++. |+++ +...|.+|..++ + ++.||.+. +|..+.|+.||.|+..
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~---g--rV~GV~t~---dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN---G--RVVGVVTQ---DGLEFRAKAVVLTTGT 155 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC---C--EEEEEEEC---CCCEEECCEEEEeeCc
Confidence 4567788888877 6787 567899998876 5 79999886 7889999999999885
No 209
>PRK13748 putative mercuric reductase; Provisional
Probab=88.43 E-value=1.8 Score=41.67 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.+++.|++|+++++|++|..++ + .+ .+.. ++..+++|.||.++...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~---~--~~-~v~~----~~~~i~~D~vi~a~G~~ 364 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD---G--EF-VLTT----GHGELRADKLLVATGRA 364 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EE-EEEe----cCCeEEeCEEEEccCCC
Confidence 3567888999999999999999999998654 3 22 2333 23368999999998864
No 210
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.39 E-value=3.5 Score=42.76 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-cCCCeEEEcCEEEEcCChh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-~~~g~~~~aD~VV~a~p~~ 111 (254)
+...+.+.+++.|++|++++.|++|.-+ + ++.+|++.. +.+++++++|.|+++....
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~----~--~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG----K--RVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC----C--cEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 4567788899999999999999999744 3 567777652 2356789999999998753
No 211
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=88.03 E-value=2 Score=39.29 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh-HhhcCCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLPS 119 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~-~~~Ll~~ 119 (254)
.+.+.|.+..++.|++++++++|.+++-.++ . ...|++. .+|+ +++||.||-|-..+. +++.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~---~~~V~~~--~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS--D---RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--C---ceEEEEE--cCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 3456777777889999999999999975221 2 2345553 1553 689999998877754 7777653
No 212
>PLN02546 glutathione reductase
Probab=88.00 E-value=1.9 Score=41.71 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
++.+.+.+.+.++++|++|++++.|++|...++ + .+ .+... +++...+|.||.++....
T Consensus 292 d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~--g--~v-~v~~~---~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 292 DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD--G--SL-SLKTN---KGTVEGFSHVMFATGRKP 350 (558)
T ss_pred CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC--C--EE-EEEEC---CeEEEecCEEEEeecccc
Confidence 445667788999999999999999999976542 3 22 34332 455555899999988643
No 213
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.95 E-value=2.3 Score=41.97 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCCC-----------eEEEcCEEEEcCCh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDV 110 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~~g-----------~~~~aD~VV~a~p~ 110 (254)
....+.+++.|++|++++.+.+|..+++ | ++.+|.+.. +.+| .++++|.||.++..
T Consensus 510 ~~e~~~~~~~Gv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 510 KKEVKNAREEGANFEFNVQPVALELNEQ--G--HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred HHHHHHHHHcCCeEEeccCcEEEEECCC--C--eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 3456778899999999999999986542 6 788887631 0112 26899999999875
No 214
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=87.76 E-value=1.8 Score=42.38 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+...|.+.+++. |++++ ...|..+..+++ + ++.||.+. +|..+.||.||.|+...
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~--g--~V~GV~t~---~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN--D--EIKGVVTQ---DGLKFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC--C--cEEEEEEC---CCCEEECCEEEEccCcc
Confidence 4567888889988 56665 557888877632 5 78999886 78889999999999875
No 215
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=0.99 Score=38.65 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=55.3
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcC
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll 117 (254)
.|||.|-.+..|.+.|.+.-++.|-+|... .|.++..+. +-.-+.. +.+.+.+|+||+++...+=+--|
T Consensus 61 PGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss------kpF~l~t----d~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 61 PGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS------KPFKLWT----DARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred CCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC------CCeEEEe----cCCceeeeeEEEecccceeeeec
Confidence 688888777789999999999999998875 588888775 2333433 56778999999999976655456
Q ss_pred CCc
Q 025358 118 PSS 120 (254)
Q Consensus 118 ~~~ 120 (254)
|.+
T Consensus 130 pg~ 132 (322)
T KOG0404|consen 130 PGE 132 (322)
T ss_pred CCC
Confidence 653
No 216
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=87.56 E-value=2.1 Score=38.87 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
..+.+.+.+.+.+.|++++ ..+|..+..+++ + ...|.+. +|+.++||.||.|.....
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~--~---~~~v~~~---~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV--A---LSTVYCA---GGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC--c---eeEEEeC---CCCEEEeCEEEECCCCch
Confidence 3567888888899999886 668988887632 2 3456664 677899999999999865
No 217
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=3.8 Score=37.84 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=53.5
Q ss_pred CceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCC
Q 025358 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (254)
Q Consensus 35 ~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p 109 (254)
.+...||..+++| +.+.++|.-.=-||+.-+|.++.+|...++ | ++.|+.. +++...+..+|+...
T Consensus 221 ~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~--g--k~igvk~----~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 221 KSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN--G--KVIGVKS----GGEVAKCKKVICDPS 286 (440)
T ss_pred CCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC--c--cEEEEec----CCceeecceEEecCc
Confidence 4458899999995 899999999889999999999999999653 6 7888765 466666777776643
No 218
>PRK05868 hypothetical protein; Validated
Probab=87.30 E-value=1.9 Score=39.35 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=38.6
Q ss_pred hCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
..|++++++++|++|..++ + . ..|.+. +|++++||.||-|=..++ +++.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~---~--~-v~v~~~---dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG---D--S-VRVTFE---RAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecC---C--e-EEEEEC---CCCeEEeCEEEECCCCCchHHHHh
Confidence 4689999999999998654 2 2 346665 788899999999988754 77755
No 219
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=87.29 E-value=2.7 Score=38.74 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCC--CeEEEcCEEEEcCCh
Q 025358 43 GSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD--KKVVQADAYVAACDV 110 (254)
Q Consensus 43 g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~--g~~~~aD~VV~a~p~ 110 (254)
+...-.+.....+.|+.+|.+|+++++|+....++| | .+ -|++.+..+ .+++++|....++.-
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d--g--~v-~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD--G--PV-EIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC--C--ce-EEEEEecCCCceeEEEeeEEEEEccC
Confidence 344456889999999999999999999999999885 5 33 455543223 357889999888774
No 220
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.21 E-value=2.4 Score=38.20 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+...+.+.++++| ..++.+++|..+..++ ++.+|.+. +|. +.||.||+|+..+.
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~------~~~~v~t~---~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG------RVVGVETD---GGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC------cEEEEEeC---Ccc-EEeCEEEEcCchHH
Confidence 67889999999999 5677799999998751 14567664 555 99999999999764
No 221
>PLN02463 lycopene beta cyclase
Probab=87.19 E-value=2.1 Score=40.23 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.|.+.+++.|++++ +++|++|..++ + + ..|.+. +|++++||.||.|.....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~--~-~~V~~~---dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE---S--K-SLVVCD---DGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEECcCCCc
Confidence 456778888888999996 67999998775 3 2 456665 788999999999988653
No 222
>PRK12831 putative oxidoreductase; Provisional
Probab=87.12 E-value=2.6 Score=39.80 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC---------CC--eEEEcCEEEEcCChh
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT---------DK--KVVQADAYVAACDVP 111 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~---------~g--~~~~aD~VV~a~p~~ 111 (254)
+.+++.|++|++++.+.+|..+++ | ++.+|.+.. +. +| ..+++|.||.++...
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~ 395 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDEN--G--WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTS 395 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCC
Confidence 456789999999999999986542 6 788876631 00 12 268999999998753
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.05 E-value=1.8 Score=41.32 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=41.5
Q ss_pred HHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC--CCeEEEcCEEEEcCChh
Q 025358 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT--DKKVVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~--~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+++ .|++|++++.|.+|.-++ + ++.+|.+.+.. +++.+++|.||.++...
T Consensus 391 ~~l~~~l~~~~gV~i~~~~~v~~i~~~~---~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 391 KVLQDKLKSLPNVDILTSAQTTEIVGDG---D--KVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred HHHHHHHhcCCCCEEEECCeeEEEEcCC---C--EEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 345777776 599999999999997654 4 67788775321 23578999999997753
No 224
>PRK06996 hypothetical protein; Provisional
Probab=86.84 E-value=2.2 Score=39.13 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCCh--hhHhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDV--PGIKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~--~~~~~Ll 117 (254)
.+.+.|.+.+++.|++++++++|++++.+++ + + .+.+.+ .+| ++++||.||-|-.. ...++.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~---v-~v~~~~-~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--G---V-TLALGT-PQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--e---E-EEEECC-CCcceEEeeeEEEECCCCCchHHHHHc
Confidence 4678899999999999999999999976552 2 2 244431 122 68999999999662 4455554
No 225
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=86.68 E-value=3.5 Score=40.48 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+...+...+++.|++|+.++.|.+|..+++.+| ++.||...+..+|+ .+.|++||+|+...
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G--rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN--RIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC--eEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 4455666677788899999999999998641015 79998764322454 57899999999864
No 226
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=86.63 E-value=3.3 Score=37.50 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=56.7
Q ss_pred eeEEeCCCCc---chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EEcCEEEEcCChh
Q 025358 37 LLRMLKGSPD---VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDVP 111 (254)
Q Consensus 37 ~~g~~~g~~~---~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~--~~aD~VV~a~p~~ 111 (254)
.+-+|..++| -++-+.+.+.+++.||-+..+-+|.+-.+.+ | +|+.|-+. |+.. +.||.+|+|+.--
T Consensus 245 l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~---~--~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 245 LFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG---G--RVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred eeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeC---C--eEEEEEec---ccccCCCChhHeeeecccc
Confidence 4555666653 3678899999999999999999999999997 5 78888775 5544 5699999998755
Q ss_pred hHhhcCC
Q 025358 112 GIKRLLP 118 (254)
Q Consensus 112 ~~~~Ll~ 118 (254)
--+.|..
T Consensus 317 fskGLva 323 (421)
T COG3075 317 FSKGLVA 323 (421)
T ss_pred ccccchh
Confidence 4444544
No 227
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=86.00 E-value=1.4 Score=43.20 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.++++...++.|+.|.-|++|++|....+ +..||.+. .| .+++.+||-++.+++
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~---~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP---HG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc---Cc-ceecceEEechhHHH
Confidence 6789999999999999999999999999874 46688874 55 589999999999865
No 228
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=85.99 E-value=3 Score=37.62 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----------------cCCCeEEEcCEEEEcCChh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-----------------~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.++++|+++++++.+.+++-+ + ++.+|.+.. +.+++.+++|.||.++...
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~----~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE----G--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC----C--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 55677899999999999999998743 2 455555421 1234679999999998764
No 229
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=85.92 E-value=3.7 Score=39.42 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC-eEEEcCEEEEcCChhh-HhhcCCC
Q 025358 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG-IKRLLPS 119 (254)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g-~~~~aD~VV~a~p~~~-~~~Ll~~ 119 (254)
+-+.|.+.+++. |++|+++++|.++..+++ + + .+.+.. .+| ++++||.||.|...+. +++++..
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~---v-~v~~~~-~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDD--G---V-TLTVET-PDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--E---E-EEEEEC-CCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 334566777775 689999999999988762 2 3 233321 244 3689999999988754 7777653
No 230
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=85.80 E-value=1.9 Score=39.73 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
|.+.|.+.+. ++.++++++|.+|..+++ + +.+.+. +|++++||.||.|-..+. +++.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~----~~v~~~---~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--E----VQVLFT---DGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--c----EEEEEc---CCCEEEeeEEEECCCccHHHHHHh
Confidence 4455555442 467899999999987652 3 345554 788899999999988765 66644
No 231
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.70 E-value=3 Score=39.16 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.+.+.+ +.|++++++++|+++..++ + . ..+.+. +|+.+++|.||.++....
T Consensus 211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~---~--~-v~v~~~---~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 211 DISDRFTEIA-KKKWDIRLGRNVTAVEQDG---D--G-VTLTLD---DGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHH-hcCCEEEeCCEEEEEEEcC---C--e-EEEEEc---CCCEEEcCEEEEeeccCc
Confidence 4555555544 4789999999999998654 3 2 234454 677899999999998543
No 232
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=85.10 E-value=3.7 Score=39.38 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChhh-HhhcCCC
Q 025358 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLPS 119 (254)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~~-~~~Ll~~ 119 (254)
-+.|.+.+++. |++|+++++|++|+.+++ + + .+++.+ .+| ++++||.||-|-..+. +++.+..
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~---v-~v~~~~-~~G~~~~i~ad~vVgADG~~S~vR~~lg~ 182 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDDD--G---V-TVTLTD-ADGQRETVRARYVVGCDGANSFVRRTLGV 182 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--e---E-EEEEEc-CCCCEEEEEEEEEEecCCCchhHHHHcCC
Confidence 34556666664 899999999999998763 3 3 344431 145 5789999999988754 7777743
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=84.74 E-value=1.4 Score=44.39 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=40.3
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
...+++++.|++++++++|.+|..++ . .|.+. +|+.+.+|.+|+|+....
T Consensus 59 ~~~~~~~~~gv~~~~g~~V~~Id~~~---k-----~V~~~---~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 59 NSKDWYEKHGITLYTGETVIQIDTDQ---K-----QVITD---AGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCHHHHHHCCCEEEcCCeEEEEECCC---C-----EEEEC---CCcEeeCCEEEECCCCCc
Confidence 34677889999999999999998765 2 25554 788899999999998643
No 234
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.54 E-value=4.3 Score=36.83 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.|.+.|.+.+++.| ++++++++|++|..+++ + + .+.+. ++ +++||.||-|-..+. +++.+.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v-~v~~~---~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHND--Y---S-IIKFD---DK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--e---E-EEEEc---CC-EEeeCEEEEeCCCCchhHHhcC
Confidence 45777888888876 89999999999987652 2 3 35553 55 899999999988754 766653
No 235
>PRK07538 hypothetical protein; Provisional
Probab=84.48 E-value=4.2 Score=37.42 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=41.6
Q ss_pred hHHHHHHHHHh-CCc-EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 49 LSGPIRKYITD-KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 49 l~~~l~~~l~~-~Gg-~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
|.+.|.+.+.+ .|. +|+++++|+++..+++ + .+..+....++++++++||.||-|-..+. +++.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44556666655 474 6999999999987653 4 23222211111235899999999988764 66654
No 236
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=84.43 E-value=4 Score=38.03 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhCC---cEEEcCceeeEEEecc---CCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKG---GRFHLRWGCREILYDK---AANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~G---g~i~~~~~V~~i~~~~---~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+.+.|.+.+++.+ ++++++++|.+|.... ++++ .-..|++. +|+++.||.||-|=..+ .+++.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~--~~v~v~~~---~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS--NWVHITLS---DGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC--CceEEEEc---CCCEEEeeEEEEecCCCChhHHHcC
Confidence 35667788888876 8999999999998631 0012 12346665 78899999999997765 4777664
No 237
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.18 E-value=2.7 Score=38.61 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=37.4
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+++++.|+++++++.|..|..++ . .|.+. +|+.+.+|++|.|+...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~---~-----~v~~~---~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT---R-----ELVLT---NGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC---C-----EEEEC---CCCEEEcCEEEEccCCC
Confidence 45678899999999999998765 2 25554 78889999999999864
No 238
>PRK07846 mycothione reductase; Reviewed
Probab=84.17 E-value=3.6 Score=38.60 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.+.+.+. .+.|++++++++|+++..++ + ++ .+.+. +|+.+++|.||.++....
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQDG---S--GV-TLRLD---DGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEcC---C--EE-EEEEC---CCcEeecCEEEEEECCcc
Confidence 344445444 45789999999999998654 2 22 35554 688899999999988643
No 239
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.17 E-value=3.4 Score=39.47 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
..+.+.+++ .|++|++++.|.+|.-++ + ++.++.+.+..+| +++++|.|+.++...
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~~---g--~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGDG---D--KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcCC---C--cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 455666776 599999999999998654 4 6778877532233 468999999997754
No 240
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=83.70 E-value=3 Score=38.05 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.|-+.+.+.++ .++.++++++|++|...++ + ..|++. +|+.+.|+.||-+.++.
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~----~~v~~~---~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGD--G----VLVVLA---DGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCc--e----EEEEEC---CCCEEEeeEEEECCCcc
Confidence 56777888888 6778999999999988762 2 345665 88899999999998754
No 241
>PRK07236 hypothetical protein; Provisional
Probab=82.77 E-value=4.2 Score=37.05 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=36.2
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcC
Q 025358 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
+++|+++++|++|+.++ + .+ .|.+. +|+++.||.||.|=..+. +++.+
T Consensus 112 ~~~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDG---D--RV-TARFA---DGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEECCCCCchHHHHh
Confidence 46899999999998775 2 23 35565 788999999999977654 55543
No 242
>PRK06753 hypothetical protein; Provisional
Probab=82.34 E-value=3.9 Score=36.85 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-HhhcCC
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
.+.|.+.++ +.+|+++++|++|..++ + + ..|++. +|+.+.+|.||.|-..+. +++.+.
T Consensus 101 ~~~L~~~~~--~~~i~~~~~v~~i~~~~---~--~-v~v~~~---~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 101 IDIIKSYVK--EDAIFTGKEVTKIENET---D--K-VTIHFA---DGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHhCC--CceEEECCEEEEEEecC---C--c-EEEEEC---CCCEEecCEEEECCCcchHHHHHhC
Confidence 344444433 46899999999998664 3 2 345554 788899999999988764 666553
No 243
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.31 E-value=4.9 Score=37.98 Aligned_cols=58 Identities=5% Similarity=-0.147 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHhCCcE--EEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGR--FHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~--i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
+.+.+-|.++.+..|.+ |++|++|.+|...+ + + +.|++.+ .++. +..+|+||+|+...
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~--~-w~V~~~~-~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---G--K-WRVQSKN-SGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---C--e-EEEEEEc-CCCceEEEEcCEEEEeccCC
Confidence 35788889999999987 99999999998765 3 2 4455542 1222 45799999999854
No 244
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.25 E-value=4.4 Score=39.87 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec------CC-----------CeEEEcCEEEEcCCh
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TD-----------KKVVQADAYVAACDV 110 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~------~~-----------g~~~~aD~VV~a~p~ 110 (254)
..+++.|++|++++.+++|..+++ | ++.++.+... .+ ...+++|.||.++..
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDED--G--RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 345788999999999999987653 6 7888765210 11 236889999999874
No 245
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=82.15 E-value=4.4 Score=36.84 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=37.0
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+++.|++++++++|.+|..++ . .|.+ +|+.+.+|.+|+|+...
T Consensus 64 ~~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~----~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 64 AGEFAEQFNLRLFPHTWVTDIDAEA---Q-----VVKS----QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHHHhCCCEEECCCEEEEEECCC---C-----EEEE----CCeEEeCCEEEECCCCC
Confidence 4456778899999999999998764 2 2333 57789999999999864
No 246
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=82.11 E-value=2 Score=38.72 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+..++.+.+++.|++++.+ +|.+|..++ . .|.+. +|+++++|++|+|+...
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~---~-----~V~~~---~g~~~~yD~LviAtG~~ 106 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR---R-----KVLLA---NRPPLSYDVLSLDVGST 106 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc---C-----EEEEC---CCCcccccEEEEccCCC
Confidence 4556677888899999875 899998875 2 35565 78889999999998854
No 247
>PLN02661 Putative thiazole synthesis
Probab=81.60 E-value=6.1 Score=36.06 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=42.5
Q ss_pred hhHHHHHHHHH-hCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----cCCC------eEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----ATDK------KVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-----~~~g------~~~~aD~VV~a~p~ 110 (254)
.+...|.+... +.|++|+.++.|..+..++ + ++.|+.+.- +.++ ..++|++||+|+..
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~---g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---D--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC---C--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 34566776554 4789999999999999876 5 789988521 0111 36899999999984
No 248
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=81.54 E-value=3.6 Score=38.20 Aligned_cols=53 Identities=6% Similarity=0.036 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEE--cCEEEEcCChh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~--aD~VV~a~p~~ 111 (254)
....+.+++.|++++++++|.+|..++ . .|.+....+|+.++ +|++|+|+...
T Consensus 60 ~~~~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 60 ARTPEEFIKSGIDVKTEHEVVKVDAKN---K-----TITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred cCCHHHHHHCCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEEecCCEEEECCCCC
Confidence 344567888999999999999998875 2 24443212356666 99999998864
No 249
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.94 E-value=6.9 Score=40.18 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHhC----CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCCh
Q 025358 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~ 110 (254)
+..+...|.+.++++ ++++..++.+.+|..++ | ++.|+...+..+|+ .+.|+.||+|+.-
T Consensus 138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG---G--RAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC---C--EEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 345677888887766 46777777777888764 6 89998764323564 4789999999884
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=80.80 E-value=3.3 Score=33.50 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceE----EEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYV----KGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v----~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.++..+++++++++|.+|.... + ++ ..+....+.++..+.+|++|.|+...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~---~--~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES---K--RVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST---T--EEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc---c--ccccCcccceeeccCCceEecCCeeeecCccc
Confidence 55666688999999999999998875 3 32 12222223467789999999999965
No 251
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=80.52 E-value=6.1 Score=39.65 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=39.2
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCC-----------CeEEEcCEEEEcCChh
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATD-----------KKVVQADAYVAACDVP 111 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~~-----------g~~~~aD~VV~a~p~~ 111 (254)
+.+++.|++|++++.+.+|..+++ | ++.+|.+.. +.+ ..++++|.||.++...
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK--G--WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC--C--EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 467889999999999999976542 6 788887631 001 2368999999998753
No 252
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.97 E-value=7.3 Score=36.77 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec-CCCeEEEcCEEEEcCChhh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~-~~g~~~~aD~VV~a~p~~~ 112 (254)
..+.+.+.+.++++ ++++++++|++|...+ + . ..+.+... +.++++++|.||.++....
T Consensus 215 ~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~---~--~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE---D--G-IYVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC---C--E-EEEEEEeCCCcceEEEeCEEEEeecccc
Confidence 35677888899888 9999999999998765 2 2 23444311 1124699999999988643
No 253
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=79.80 E-value=6.1 Score=36.51 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEE--cCEEEEcCChh
Q 025358 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (254)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~--aD~VV~a~p~~ 111 (254)
.+.+++.|++++++++|.+|..++ + .|.+....+++.+. +|++|.|+...
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVNDER---Q-----TVVVRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEecCCCEEEECCCCC
Confidence 345588899999999999998765 2 24443212355677 99999998863
No 254
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.57 E-value=7 Score=40.69 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred HHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC--------CC--eEEEcCEEEEcCCh
Q 025358 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDV 110 (254)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~--------~g--~~~~aD~VV~a~p~ 110 (254)
.+.+++.|++|++++.+.+|..+++ | ++.+|.+.. +. .| .++++|.||.++..
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~--G--~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAE--G--SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCC--C--eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 3567889999999999999986543 6 788887641 01 12 36899999999985
No 255
>PRK11445 putative oxidoreductase; Provisional
Probab=79.24 E-value=8.7 Score=34.57 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh-HhhcCC
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~-~~~Ll~ 118 (254)
+.|.+ ..+.|++++.+++|+++..+++ + +.|.+. .+|+ +++||.||.|..... +++.+.
T Consensus 103 ~~L~~-~~~~gv~v~~~~~v~~i~~~~~--~----~~v~~~--~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 103 LWLKS-LIPASVEVYHNSLCRKIWREDD--G----YHVIFR--ADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HHHHH-HHhcCCEEEcCCEEEEEEEcCC--E----EEEEEe--cCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 33444 3467899999999999987652 3 334442 1453 689999999988754 555543
No 256
>PRK02106 choline dehydrogenase; Validated
Probab=79.15 E-value=3.9 Score=39.51 Aligned_cols=46 Identities=7% Similarity=0.046 Sum_probs=36.0
Q ss_pred hCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCCh
Q 025358 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (254)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~ 110 (254)
+.+.+|++++.|++|..++ + +++||+.... ++ ..+.++.||+++..
T Consensus 213 ~~nl~i~~~a~V~rI~~~~---~--~a~GV~~~~~-~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG---K--RAVGVEYERG-GGRETARARREVILSAGA 260 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC---C--eEEEEEEEeC-CcEEEEEeeeeEEEccCC
Confidence 4569999999999999985 5 7999998631 22 23579999999885
No 257
>PRK13984 putative oxidoreductase; Provisional
Probab=79.06 E-value=6.9 Score=38.12 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=36.6
Q ss_pred HHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-----c-----------CCCeEEEcCEEEEcCChh
Q 025358 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----A-----------TDKKVVQADAYVAACDVP 111 (254)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-----~-----------~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.|++|++++.+.+|..++ | ++.+|.+.. + .+++.+++|.||.++...
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~---g--~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN---D--KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC---C--EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 346899999999999987654 5 788876641 0 123478999999998754
No 258
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=77.33 E-value=7.4 Score=36.35 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-ecCCCeEEEcCEEEEcCChh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~-~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+.+.+.+.++++ ++|+++++|.+|..++ + .++++. .+.+++++++|.||.++...
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~---~----~~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG---D----EKVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC---C----ceEEEEEcCCceEEEEeCEEEEccCCc
Confidence 35677888899999 9999999999997653 1 123321 11244679999999998753
No 259
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=77.05 E-value=4.1 Score=41.56 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=38.3
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
..+++++.|++++++++|.+|..+. + -|.+. +|+.+.+|.+|+|+...
T Consensus 65 ~~~~~~~~gI~~~~g~~V~~Id~~~------~--~V~~~---~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 65 REGFYEKHGIKVLVGERAITINRQE------K--VIHSS---AGRTVFYDKLIMATGSY 112 (847)
T ss_pred CHHHHHhCCCEEEcCCEEEEEeCCC------c--EEEEC---CCcEEECCEEEECCCCC
Confidence 3567788999999999999997764 2 24454 78889999999999864
No 260
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=76.56 E-value=12 Score=37.23 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=39.6
Q ss_pred hhHHHHHHHH-HhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--C--CC--------eEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--T--DK--------KVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--~--~g--------~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+ +++|++|++++.|++|.-.++ + +...+.+... . ++ +++++|.||.++...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG--N--QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 4566667765 679999999999999986542 2 2222333210 0 11 378999999998864
No 261
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=76.19 E-value=3 Score=38.91 Aligned_cols=55 Identities=20% Similarity=0.091 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.|.+--.+.+++.|+.|+-|+.|+++.... + ++ -+.++ ||.++..|.||.++...
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~---~--nl-~lkL~---dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC---K--NL-VLKLS---DGSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc---c--ce-EEEec---CCCeeeeeeEEEEecCC
Confidence 334444667889999999999999998765 2 22 35666 99999999999998754
No 262
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=76.17 E-value=11 Score=36.50 Aligned_cols=53 Identities=21% Similarity=0.121 Sum_probs=36.3
Q ss_pred HHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cCCC---------eEEEcCEEEEcCChh
Q 025358 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK---------KVVQADAYVAACDVP 111 (254)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~~g---------~~~~aD~VV~a~p~~ 111 (254)
.+..++.|++|++++.+.+|..+++ + ++ ++.+.. +.+| ..+++|.||.++...
T Consensus 312 ~~~a~~~GVki~~~~~~~~i~~~~~--~--~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 312 IEEALREGVEINWLRTPVEIEGDEN--G--AT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHHHHcCCEEEecCCcEEEEcCCC--C--EE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 3345668999999999999986652 4 33 654321 0112 478999999998853
No 263
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=76.07 E-value=7.1 Score=35.39 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhCC------cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKG------GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~G------g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.++.++.+.+++.- ++|.+|++|..|..++ | +|.||+.-+ .+|+ .+.+|+||+++.-.
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~---g--kVsgVeymd-~sgek~~~~~~~VVlatGGf 205 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNN---G--KVSGVEYMD-ASGEKSKIIGDAVVLATGGF 205 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC---C--eEEEEEEEc-CCCCccceecCceEEecCCc
Confidence 46777777777553 7899999999999654 7 899998752 2443 46799999998743
No 264
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=75.71 E-value=2 Score=39.58 Aligned_cols=88 Identities=8% Similarity=0.034 Sum_probs=55.2
Q ss_pred CCCCccccHHHHHHHHHHHHhcc---CCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEE
Q 025358 11 FIDCDNISARCMLTIFALFATKT---EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG 87 (254)
Q Consensus 11 ~~~~~~~SA~~~~~~l~~~~~~~---~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~g 87 (254)
+.+|+++|+.|+..+=.++.... ...-.|||++|+. .+++.|. +..+.+|++|+.+..+..++ + .
T Consensus 160 g~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt-~~~~~ml---~~~~i~v~l~~~~~~~~~~~---~-----~ 227 (377)
T TIGR00031 160 GLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYT-KLFEKML---DHPLIDVKLNCHINLLKDKD---S-----Q 227 (377)
T ss_pred CCChHHCCHHHeEecceEecCCCCcccccccccccccHH-HHHHHHH---hcCCCEEEeCCccceeeccc---c-----c
Confidence 56788999988763222332111 1123789988863 4666554 55788899999888887653 2 2
Q ss_pred EEEeecCCCeEEEcCEEEEcCChhhHhh
Q 025358 88 LAMSKATDKKVVQADAYVAACDVPGIKR 115 (254)
Q Consensus 88 v~l~~~~~g~~~~aD~VV~a~p~~~~~~ 115 (254)
+.+. ++ .+. |.||++.|++.+-.
T Consensus 228 ~~~~---~~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 228 LHFA---NK-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred eeec---cc-ccc-CcEEEecCchHHHh
Confidence 4342 23 333 88999998876543
No 265
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=75.46 E-value=14 Score=33.69 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec---CC--CeEEEcCEEEEcCChhh-HhhcC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA---TD--KKVVQADAYVAACDVPG-IKRLL 117 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~---~~--g~~~~aD~VV~a~p~~~-~~~Ll 117 (254)
.|-+.|.+.+.+.|++++.+ .|+++..++ + . ..+.+... .+ ..++.||.||-|...+. +++.+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~--~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR---D--G-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC---C--e-EEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 45566788888899999765 699997765 3 2 34555410 01 24789999999988754 66654
No 266
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=75.30 E-value=13 Score=33.90 Aligned_cols=65 Identities=6% Similarity=-0.047 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh-hHhhcCCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLPS 119 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~-~~~~Ll~~ 119 (254)
.+...|.+.+.+.|+++++++++.++.-.++ . -.+|++.. +|+ +++||.||-|=..+ .+++.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~---~~~V~~~~--~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAG--D---RPYVTFER--DGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--C---ccEEEEEE--CCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 3456677888888999999999888864221 1 23566631 554 68999999887775 47777654
No 267
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=72.45 E-value=12 Score=33.39 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=48.0
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
+|++.+-....+.+.|.+..+.-|.++.. ..|.++...+ ....|.+. +|+ +++++||.|+....
T Consensus 52 pg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~------~~F~v~t~---~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 52 PGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG------GPFKVKTD---KGT-YEAKAVIIATGAGA 115 (305)
T ss_pred CCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC------ceEEEEEC---CCe-EEEeEEEECcCCcc
Confidence 56666556667899999999999999888 7777776653 13345553 565 99999999999754
No 268
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=70.38 E-value=8 Score=36.46 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
+...--++.++.|.++++++.|.++.+.. . .+.+. +|+.++.|..|+|+..
T Consensus 129 ~a~r~~e~Yke~gIe~~~~t~v~~~D~~~---K-----~l~~~---~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 129 LAKRTPEFYKEKGIELILGTSVVKADLAS---K-----TLVLG---NGETLKYSKLIIATGS 179 (478)
T ss_pred ccccChhhHhhcCceEEEcceeEEeeccc---c-----EEEeC---CCceeecceEEEeecC
Confidence 44455668999999999999999999986 2 36676 8999999999999887
No 269
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=70.22 E-value=5.6 Score=38.37 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+-..|.+.|+..-.=-.....|..|.++++ . +|.||++. +|..+.|++||+++..
T Consensus 101 ~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~--~--~v~GV~t~---~G~~~~a~aVVlTTGT 156 (621)
T COG0445 101 LYRRAMKNELENQPNLHLLQGEVEDLIVEEG--Q--RVVGVVTA---DGPEFHAKAVVLTTGT 156 (621)
T ss_pred HHHHHHHHHHhcCCCceehHhhhHHHhhcCC--C--eEEEEEeC---CCCeeecCEEEEeecc
Confidence 4567788888877644445667888888762 3 59999997 8999999999999874
No 270
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.11 E-value=12 Score=34.30 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh-hhHhhc
Q 025358 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV-PGIKRL 116 (254)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~-~~~~~L 116 (254)
++.+.+.+-+.+.++.+|+++|.++.+.++....+ | -..-+ .. +|....+|.++.|+.- +..+.|
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~--g--~~~~i-~~---~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD--G--LELVI-TS---HGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC--C--ceEEE-Ee---ccccccccEEEEEecCCCCcccc
Confidence 34567888899999999999999999999998764 4 12222 22 6755569999999874 344443
No 271
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=67.65 E-value=9.1 Score=35.41 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccC
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKA 78 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~ 78 (254)
+.++.||..+|++.||+|.+++.|+.|.++..
T Consensus 227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t 258 (587)
T COG4716 227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVDDT 258 (587)
T ss_pred HHHHHHHHHHHHHcCCceEeccEEeeeeeccC
Confidence 47899999999999999999999999999764
No 272
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=65.95 E-value=13 Score=33.65 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEeec--CCCeEEEcCEEEEcCCh
Q 025358 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDV 110 (254)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--~~g~~~~aD~VV~a~p~ 110 (254)
.+|+.+++|+.++..++ | + ..+.+... ...+.+++|+||+||..
T Consensus 294 ~~l~~~~~v~~~~~~~~--~--~-~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGD--G--G-VRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEEETTEEEEEEEEES---S--S-EEEEEEETTT--EEEEEESEEEE---E
T ss_pred eEEeCCCEEEEEEECCC--C--E-EEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 68999999999998873 3 2 34555531 22356889999999875
No 273
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=65.78 E-value=20 Score=33.45 Aligned_cols=49 Identities=8% Similarity=0.029 Sum_probs=33.8
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
...++.|++++++++|.+|..++ + .|.+....+++ .+++|++|.|+...
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDER---Q-----TVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCC---C-----EEEEEECCCCcEEeeecCEEEECCCCC
Confidence 33466899999999999998875 2 24443211222 36799999998754
No 274
>PLN02985 squalene monooxygenase
Probab=65.56 E-value=37 Score=32.53 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~--~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+.+.|.+.+++. |++++.+ .|.++..++ + .+.||++.. .+|++ +.||.||.|-..+ .+++.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~---~--~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK---G--VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC---C--EEEEEEEEc-CCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 4567788888776 6888866 566665554 4 577888742 24543 5699999998875 4777654
No 275
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=65.48 E-value=30 Score=29.70 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee---cC-----CCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---AT-----DKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~---~~-----~g~~~~aD~VV~a~p~~~ 112 (254)
.+...++...-+.|++|+.++.|+.+.+.++ . +|.||.++= +. |--.++|++||.++.++.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~--~--rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDD--P--RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecC--C--ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 3566677777789999999999999999873 3 699988751 11 223678999999999864
No 276
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=64.91 E-value=13 Score=37.11 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHhhcCCCcc
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW 121 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~~~~ 121 (254)
++-.--++.+++|++++++.+|..|..++ . .|... .|.++..|-.|+|+.-..+.-=+|+.+
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~~---k-----~V~t~---~g~~~~YDkLilATGS~pfi~PiPG~~ 122 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRAN---K-----VVTTD---AGRTVSYDKLIIATGSYPFILPIPGSD 122 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccCc---c-----eEEcc---CCcEeecceeEEecCccccccCCCCCC
Confidence 34445688999999999999999998775 2 35554 899999999999988654322266543
No 277
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=64.33 E-value=15 Score=33.76 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHhcc---CCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC
Q 025358 18 SARCMLTIFALFATKT---EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT 94 (254)
Q Consensus 18 SA~~~~~~l~~~~~~~---~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~ 94 (254)
+++-....+.+++++- +.+...|++-|++| +.+.+.+.-.-.||++-+|+++.+|...+ .|.+|..
T Consensus 198 p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk------~v~~v~~---- 266 (434)
T COG5044 198 PAREALERILRYMRSFGDYGKSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK------DVETVDK---- 266 (434)
T ss_pred CchHHHHHHHHHHHhhcccCCCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc------ceeeeec----
Confidence 3444444444444432 24568899989886 89999999999999999999999998764 2334433
Q ss_pred CCeEEEcCEEEEcCCh
Q 025358 95 DKKVVQADAYVAACDV 110 (254)
Q Consensus 95 ~g~~~~aD~VV~a~p~ 110 (254)
++.+..|-.+|+....
T Consensus 267 ~~~~~ka~KiI~~~~~ 282 (434)
T COG5044 267 GSLTQKAGKIISSPTY 282 (434)
T ss_pred CcceeecCcccCCccc
Confidence 5677888888877543
No 278
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=63.98 E-value=12 Score=34.14 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHh---CC-cEEEcCceeeEEEeccCCCCcceEEEEE---Eee--cC----------CCeEEEcCEEEEcC
Q 025358 48 YLSGPIRKYITD---KG-GRFHLRWGCREILYDKAANAETYVKGLA---MSK--AT----------DKKVVQADAYVAAC 108 (254)
Q Consensus 48 ~l~~~l~~~l~~---~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~---l~~--~~----------~g~~~~aD~VV~a~ 108 (254)
.+.+|+++.+++ +| +++++.++|.++.+.+ | +|+||. +.- .. ..-++.|-+||.+.
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~---g--rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~S 224 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG---G--RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVAS 224 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC---C--eEeeecccccCCCccccCCCccceeecceEEeeeeEEEec
Confidence 467888888887 66 8999999999999987 5 788764 210 00 11246688888875
Q ss_pred C
Q 025358 109 D 109 (254)
Q Consensus 109 p 109 (254)
.
T Consensus 225 G 225 (552)
T COG3573 225 G 225 (552)
T ss_pred C
Confidence 4
No 279
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=63.62 E-value=31 Score=35.82 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=35.6
Q ss_pred HHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee------cC--------CC--eEEEcCEEEEcCCh
Q 025358 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDV 110 (254)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~------~~--------~g--~~~~aD~VV~a~p~ 110 (254)
..+.|++|++++.+++|..+++ ++ ++.++.+.. +. .| ..++||.||.|+..
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~-~~--~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDH-TH--FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCC-CC--EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 4567999999999999976532 24 677765421 01 12 46899999999885
No 280
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=63.55 E-value=40 Score=30.93 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec------CCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~------~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.+-+.|.+..++.|++++.++ +..+....+ ++ ...+|++... +.+.+++||.||-|.... .+.+.+.
T Consensus 94 ~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g 167 (398)
T TIGR02028 94 VLDSFLRRRAADAGATLINGL-VTKLSLPAD-AD--DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEID 167 (398)
T ss_pred HHHHHHHHHHHHCCcEEEcce-EEEEEeccC-CC--ceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhC
Confidence 344568888889999998885 777754221 12 2345554211 123478999999998875 4665543
No 281
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=63.05 E-value=13 Score=35.94 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHhCCc--EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhhH
Q 025358 47 VYLSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPGI 113 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~~ 113 (254)
+.+.+-+..+.+.-|. .|++|++|.+++..++ .....-+.|+.. .+|+ +..+|+||+|+..+..
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d-~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPD-FSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETT-TT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSC
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccc-cCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCC
Confidence 4578888888888775 6999999999987642 110012334443 3453 3468999999887553
No 282
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=62.32 E-value=41 Score=31.66 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec------CCCeEEEcCEEEEcCChh-hHhhcCC
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~------~~g~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
.|-+.|.+..++.|++++.+ .+.+|...++.++ ...|.+... +++++++||.||-|-... .+++.+.
T Consensus 133 ~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~---~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg 206 (450)
T PLN00093 133 VLDSFLRERAQSNGATLING-LFTRIDVPKDPNG---PYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDID 206 (450)
T ss_pred HHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCC---cEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhC
Confidence 35566888888999999876 5888875321012 234554321 123578999999998875 4666543
No 283
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=61.67 E-value=39 Score=33.29 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCc--EEEcCceeeEEEeccCCCCcceEEEEEEeec---CCC--eEEEcCEEEEcCChh-hHhhcCC
Q 025358 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKA---TDK--KVVQADAYVAACDVP-GIKRLLP 118 (254)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~---~~g--~~~~aD~VV~a~p~~-~~~~Ll~ 118 (254)
+-+.|.+.+++.|+ +++++++|++++.+++ ++ .-+.+++... .+| ++++||+||-|=..+ .+++.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-~~--~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-GE--YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-CC--CCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 55667888888875 7899999999987642 11 1133555421 134 689999999997775 4777764
No 284
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=61.55 E-value=32 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhCCc--EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EEcCEEEEcCCh
Q 025358 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV 110 (254)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~--~~aD~VV~a~p~ 110 (254)
+.+-+.+++++-|. +|+++++|+....+.+ + +.+-|++. +|.. +.||.||+|+..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~--~--~~w~V~~~---~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED--T--KRWTVTTS---DGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC--C--CeEEEEEc---CCCeeeEecCEEEEeecC
Confidence 67889999999886 6899999999888774 4 45556665 4444 569999999987
No 285
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=59.83 E-value=19 Score=34.75 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--e-EEEcCEEEEcCCh
Q 025358 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--K-VVQADAYVAACDV 110 (254)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~-~~~aD~VV~a~p~ 110 (254)
.++..+.+|++++.|++|.+++ + +++++.+....++ + ...++.||++...
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~---~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGa 264 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEG---D--RAVGVEVEIGDGGTIETAVAAREVVLAAGA 264 (542)
T ss_pred HhcCCceEEecCCEEEEEEEEC---C--eeEEEEEEeCCCCceEEEecCceEEEeccc
Confidence 3444459999999999999998 4 7888887632222 2 2468888888775
No 286
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.80 E-value=17 Score=33.86 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=36.8
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEEcCEEEEcCChh-hHhhcC
Q 025358 62 GRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP-GIKRLL 117 (254)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~--~~~g~~~~aD~VV~a~p~~-~~~~Ll 117 (254)
+.++.+++|+.++..++ | + ..+.+.. +.+.++++.|+||+|+..+ ....+|
T Consensus 293 v~l~~~~ev~~~~~~G~--g--~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD--G--R-YRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeeccccceeeeecCCC--c--e-EEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 57999999999999884 6 4 4455542 2345678899999999986 343344
No 287
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=59.57 E-value=22 Score=32.98 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe---e----cCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS---K----ATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~---~----~~~g~~~~aD~VV~a~p~~ 111 (254)
.+..++.+.++..|+++. ..+|++|..++ + . |.+. . +.+|+.+++|++|+|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~---~--~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 63 SICEPVRPALAKLPNRYL-RAVVYDVDFEE---K--R---VKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred HhHHHHHHHhccCCeEEE-EEEEEEEEcCC---C--E---EEEecccccccccCCceEecCCEEEECCCcc
Confidence 355567777777888765 46999998876 2 2 3331 0 0257789999999998864
No 288
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=59.42 E-value=1.1e+02 Score=29.79 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=62.9
Q ss_pred eEEeCCCCcc-hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeE--EEcCEEEEcCCh--hh
Q 025358 38 LRMLKGSPDV-YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV--PG 112 (254)
Q Consensus 38 ~g~~~g~~~~-~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~--~~aD~VV~a~p~--~~ 112 (254)
+-|..|.-.+ ++.-.++=-..+.|..+.=-.+|+++..+++ | ++.|+.+.+...|++ +.|-.||-|+.+ +.
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~--~--kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD--G--KVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC--C--ceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 5556666544 3444444444567888888889999999885 7 788988764434554 669999998775 45
Q ss_pred HhhcCCCcccCchhHHHhhcCCCCcEEEEEEEecCcc
Q 025358 113 IKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (254)
Q Consensus 113 ~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~ 149 (254)
++++-++..++. =.|...||+.+.+-+
T Consensus 290 Ir~Mdd~~~~~i----------~~pSsGvHIVlP~yY 316 (680)
T KOG0042|consen 290 IRKMDDEDAKPI----------CVPSSGVHIVLPGYY 316 (680)
T ss_pred HHhhcccccCce----------eccCCceeEEccccc
Confidence 777655432211 024555677777633
No 289
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.25 E-value=34 Score=33.06 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+++.|++++ +++|.++..++ +...|... +| .+.+|.+|+|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~------~~~~V~~~---~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG------DIKTIKTA---RG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC------CEEEEEec---CC-EEEEeEEEECCCCc
Confidence 467788888889999985 78899998764 23445543 44 57899999998764
No 290
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=58.70 E-value=54 Score=28.03 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeec---CCC-----eEEEcCEEEEcCChhh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA---TDK-----KVVQADAYVAACDVPG 112 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~---~~g-----~~~~aD~VV~a~p~~~ 112 (254)
+...|....-+.|++|+-.+.|+.+.+.++ + ||.||+++-+ ..| -.++|..||.++.++.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~--~--rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED--D--RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS--C--EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC--C--eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 455666666669999999999999999883 5 8999988621 122 3788999999998754
No 291
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=56.83 E-value=28 Score=34.61 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCc-EEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh-Hhh-cCCC
Q 025358 60 KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (254)
Q Consensus 60 ~Gg-~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~-~~~-Ll~~ 119 (254)
.|. .++.+++|++|..++ + ++. +.+. +|+++.+|.||.|-..+. +++ +++.
T Consensus 204 lg~~~i~~g~~V~~I~~~~---d--~Vt-V~~~---dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG---D--KVT-VVLE---NGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC---C--EEE-EEEC---CCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 444 378999999998765 3 344 6564 788899999999988764 555 4443
No 292
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=56.38 E-value=40 Score=32.21 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=51.3
Q ss_pred eEEeCCCCcchhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCC
Q 025358 38 LRMLKGSPDVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p 109 (254)
+-...+..+..+...|.+.+++ -+++|+-++.+.+|.++++ . .+.|+.+.+. ++ ..+.|+.||+|+.
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~--~--~~~Gv~~~~~-~~~~~~~~a~~vVLATG 193 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG--I--GVAGVLVLNR-NGELGTFRAKAVVLATG 193 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC--c--eEeEEEEecC-CCeEEEEecCeEEEecC
Confidence 4445555666789999999987 6999999999999999873 2 3558887631 22 5678999999987
No 293
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=55.23 E-value=31 Score=32.16 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+++.|++++.+ +++.+..+ ++ .+. . +|+.+.+|++|+|+...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~~~-------~v-~v~-~---~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVGPN-------TV-EVL-Q---DGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEecCC-------EE-EEe-c---CCeEEEcCEEEEecCCc
Confidence 4556677788899999877 66665322 12 222 2 67789999999998854
No 294
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=52.95 E-value=51 Score=32.58 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=33.2
Q ss_pred HHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee---cC---------CC--eEEEcCEEEEcCChh
Q 025358 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---AT---------DK--KVVQADAYVAACDVP 111 (254)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~---~~---------~g--~~~~aD~VV~a~p~~ 111 (254)
..+.|++|++++.+.+|..++ ++.++..+.+.. +. +| ..+++|.||.++...
T Consensus 371 a~~eGV~i~~~~~~~~i~~~~---~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 371 ALAEGVSLRELAAPVSIERSE---GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHHcCCcEEeccCcEEEEecC---CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 346799999999999997654 311223333321 00 12 258999999998853
No 295
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=50.64 E-value=28 Score=31.70 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=29.2
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+..|+++++|.++ +. + +|++. +|++++||.||-+.+++
T Consensus 100 ~~~i~~~~~V~~v--~~---~-----~v~l~---dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA---D-----GVDLA---PGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC---C-----EEEEC---CCCEEEeeEEEECCCCC
Confidence 4348889999988 33 2 35565 88899999999998865
No 296
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=49.83 E-value=23 Score=32.09 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee-cCCCeEEEcCEEEEcCCh
Q 025358 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDV 110 (254)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-~~~g~~~~aD~VV~a~p~ 110 (254)
..+.+-+.-.+++.+-.++++++|++|....+ ++. ....|.+.+ +++++++.|++||+++..
T Consensus 95 ~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~-~~~-~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 95 REFNDYLRWVAEQLDNQVRYGSEVTSIEPDDD-GDE-DLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHHHHCCGTTTEEESEEEEEEEEEEE-TTE-EEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHHHHhCCCceEECCEEEEEEEecC-CCc-cEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 35666776666666766999999999999874 110 234555532 124578999999999873
No 297
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=49.54 E-value=52 Score=24.14 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=28.7
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcC
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD 102 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD 102 (254)
|++.+++.|+.| .|..+...++ +. -|..|.+. ||..+.+|
T Consensus 2 mVklie~~G~~F----~V~dm~~~dg-~~--~V~~ie~~---dGti~~~~ 41 (102)
T PF03197_consen 2 MVKLIEENGGWF----EVKDMSSIDG-DY--FVEKIEMA---DGTIYNSD 41 (102)
T ss_pred HhHHHHHcCCcE----EEeeeEeccc-ce--eEEEEEec---CCcEEcCC
Confidence 788999999988 6777776642 12 46778887 88766543
No 298
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=46 Score=29.67 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=44.6
Q ss_pred eEEeCCCCcchhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeec-CCCeEEEcCEEEEcCChh
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVP 111 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~-~~g~~~~aD~VV~a~p~~ 111 (254)
+-+-+..+.. -+.+++.++++ +++++++++|++|.-+ .+.+|++.+. ...+.+..|.|..++...
T Consensus 171 lv~r~~~~ra--~~~~~~~l~~~~~i~~~~~~~i~ei~G~-------~v~~v~l~~~~~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 171 LVHRRDEFRA--EEILVERLKKNVKIEVLTNTVVKEILGD-------DVEGVVLKNVKGEEKELPVDGVFIAIGHL 237 (305)
T ss_pred EEecCcccCc--CHHHHHHHHhcCCeEEEeCCceeEEecC-------ccceEEEEecCCceEEEEeceEEEecCCC
Confidence 3334444432 57788888888 8999999999999643 1567777632 122367899998887753
No 299
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=48.88 E-value=62 Score=31.23 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=32.7
Q ss_pred HHHHH-HhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEE----EcCE----EEEcCCh
Q 025358 53 IRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV----QADA----YVAACDV 110 (254)
Q Consensus 53 l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~----~aD~----VV~a~p~ 110 (254)
+.+.+ +.+|++|+++++|++|.-+ + ++..+.+.+..+|+.. .+|. ||.++..
T Consensus 184 ~~~~~~~~~gV~i~~~~~V~~i~~~----~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~ 244 (555)
T TIGR03143 184 IAEKVKNHPKIEVKFNTELKEATGD----D--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244 (555)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEcC----C--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC
Confidence 33444 4569999999999999743 3 4555544322245433 3665 8888775
No 300
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=48.70 E-value=56 Score=31.00 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHhCCcE-EEcCceeeEEEeccCCCCcceEEEEEEee-----cCCC-----------eEEEcCEEEEcCCh
Q 025358 57 ITDKGGR-FHLRWGCREILYDKAANAETYVKGLAMSK-----ATDK-----------KVVQADAYVAACDV 110 (254)
Q Consensus 57 l~~~Gg~-i~~~~~V~~i~~~~~~~g~~~v~gv~l~~-----~~~g-----------~~~~aD~VV~a~p~ 110 (254)
++..|++ +++++.+.+|.-+++ | ++.++.+.. +.+| .++++|.||.++..
T Consensus 346 ~~~~gv~~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 346 AAHYGRDPREYSILTKEFIGDDE--G--KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred hhhcCccceEEecCcEEEEEcCC--C--eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3335654 467889999976542 5 688876421 1123 36899999999875
No 301
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=46.62 E-value=39 Score=30.32 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCC-CeEEEcCEEEEcCChhhH
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATD-KKVVQADAYVAACDVPGI 113 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~-g~~~~aD~VV~a~p~~~~ 113 (254)
.|...|...++++| |++.++ .|.++..+. + |+.++......+ +...+++.+|+++.+++-
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk---~--r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSDEK---H--RINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeeccc---c--cccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 67888999999988 788887 567776444 4 677776642212 456678889888887764
No 302
>PLN02785 Protein HOTHEAD
Probab=46.28 E-value=60 Score=31.75 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=35.6
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEE-------EcCEEEEcCCh
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV-------QADAYVAACDV 110 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~-------~aD~VV~a~p~ 110 (254)
+.......+.+|.+++.|++|.++++ +...+++||++.+. +|... .+..||+++..
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~-~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGa 288 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTS-GKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGA 288 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCC-CCCceEEEEEEEEC-CCceEEEEeecccCceEEecccc
Confidence 33444556799999999999999752 11126999998531 34322 23567766653
No 303
>PRK06116 glutathione reductase; Validated
Probab=45.83 E-value=42 Score=31.22 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+++.|++++.++ ++.+ +. . .|.+ +|+.+.+|++|.|+...
T Consensus 96 ~~~~~~~l~~~gv~~~~g~-~~~v--~~---~-----~v~~----~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 96 HGSYRNGLENNGVDLIEGF-ARFV--DA---H-----TVEV----NGERYTADHILIATGGR 142 (450)
T ss_pred HHHHHHHHHhCCCEEEEEE-EEEc--cC---C-----EEEE----CCEEEEeCEEEEecCCC
Confidence 3445556777899998885 4444 22 1 2444 56789999999998753
No 304
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.05 E-value=53 Score=30.64 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+++.|++++.++ ++.+ +. . + ..|... .+++.+.+|++|+|+...
T Consensus 96 ~~~~~~~~~~gv~~~~g~-~~~~--~~---~--~-~~v~~~--~~~~~~~~d~lViAtGs~ 145 (462)
T PRK06416 96 GGVEGLLKKNKVDIIRGE-AKLV--DP---N--T-VRVMTE--DGEQTYTAKNIILATGSR 145 (462)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEc--cC---C--E-EEEecC--CCcEEEEeCEEEEeCCCC
Confidence 345667788999999885 3333 22 1 1 223321 134789999999998754
No 305
>PRK10262 thioredoxin reductase; Provisional
Probab=43.61 E-value=1.1e+02 Score=26.97 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+.+...+.+++.+ +|.+|...+ + . ..+.. +...+.+|.||+|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~--~-~~v~~----~~~~~~~d~vilAtG~~ 116 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN---R--P-FRLTG----DSGEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC---C--e-EEEEe----cCCEEEECEEEECCCCC
Confidence 45677788888888888876 577787764 3 1 22322 23468999999999864
No 306
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=42.36 E-value=70 Score=30.05 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEE--eccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREIL--YDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~--~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+++.|++++.++ ++.+. .+. . + ..|... +|+ .+.+|++|+|+...
T Consensus 95 ~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~---~--~-v~V~~~---~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 95 SADIRARLEREGVRVIAGR-GRLIDPGLGP---H--R-VKVTTA---DGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHHHHHCCCEEEEEE-EEEeecccCC---C--E-EEEEeC---CCceEEEecCEEEEcCCCC
Confidence 3455667788899998875 34433 333 2 1 234333 554 68999999998864
No 307
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.83 E-value=25 Score=36.47 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=36.8
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.|++.--+...+++...+.+++.|++|++|+.|.+- +.+. +.....+|+||+|+..+
T Consensus 347 yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~d--------------it~~---~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 347 YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT--------------ATLE---DLKAAGFWKIFVGTGAG 403 (944)
T ss_pred ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccE--------------EeHH---HhccccCCEEEEeCCCC
Confidence 444443344467888889999999999999866321 2222 22233578888887764
No 308
>PLN02546 glutathione reductase
Probab=40.93 E-value=63 Score=31.38 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
+.+.+.+.+++.|++++.+ +++.+.. . .|.+ +|+.+.+|++|+|+...
T Consensus 180 l~~~~~~~l~~~gV~~i~G-~a~~vd~-----~-----~V~v----~G~~~~~D~LVIATGs~ 227 (558)
T PLN02546 180 LTGIYKNILKNAGVTLIEG-RGKIVDP-----H-----TVDV----DGKLYTARNILIAVGGR 227 (558)
T ss_pred HHHHHHHHHHhCCcEEEEe-EEEEccC-----C-----EEEE----CCEEEECCEEEEeCCCC
Confidence 3455666678889999876 3333321 1 1334 57789999999998754
No 309
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=40.39 E-value=83 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=31.6
Q ss_pred HhCCcEEEcCceeeEEEeccCCCCcceEEEEEE--e-----------ecCCCeEEEcCEEEEcCChh
Q 025358 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAM--S-----------KATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 58 ~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l--~-----------~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.|++|+.++.+.+|..+ | ++....+ . .++++.++++|.||.++...
T Consensus 718 leeGVe~~~~~~p~~I~~d----G--~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 718 LEDGVEFKELLNPESFDAD----G--TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHcCCEEEeCCceEEEEcC----C--cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 3579999999999998532 3 2221111 0 11245689999999998864
No 310
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=38.53 E-value=70 Score=29.92 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+.+++.|++++.++.+. .++ + + |.+ +|+.+.+|+||+|+...
T Consensus 94 ~~~~~~~l~~~gv~~~~g~~~~---~~~---~--~---v~v----~~~~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 94 NGIYQKNLEKNKVDVIFGHARF---TKD---G--T---VEV----NGRDYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHHHHhCCCEEEEEEEEE---ccC---C--E---EEE----CCEEEEeCEEEEecCCC
Confidence 3445666788899999997642 122 2 2 444 57789999999998853
No 311
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=38.02 E-value=46 Score=31.40 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee---cCC---------CeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---ATD---------KKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~---~~~---------g~~~~aD~VV~a~p~ 110 (254)
.++.-|.+..|+.|++|+-+..+.++..++| | .|.||.+++ ..+ |-.+.|..-|.|-..
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~ed--g--sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDED--G--SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCC--C--cEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 4577788888999999999999999999985 7 799988752 112 335667888888664
No 312
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=37.81 E-value=86 Score=29.42 Aligned_cols=53 Identities=4% Similarity=-0.034 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEec--cCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYD--KAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~--~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
...+.+++.|++++.+. ++.+..+ .++++ -..|.+. +| +.+.+|++|+|+...
T Consensus 97 ~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~---~~~v~~~---~g~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 97 GVAALLKKGKIDVFHGI-GRILGPSIFSPMPG---TVSVETE---TGENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHhCCCEEEEEE-EEEeCCCCCcCCce---EEEEEeC---CCceEEEEcCEEEEeCCCC
Confidence 34456677899999974 5555443 00001 2334443 45 578999999998753
No 313
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=35.82 E-value=1.1e+02 Score=32.12 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecC---------------------------CCeEEEcCEEEEc
Q 025358 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---------------------------DKKVVQADAYVAA 107 (254)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~---------------------------~g~~~~aD~VV~a 107 (254)
+...+.|++|+.+....+|..+++ | ++.++++.... ....++||.||.|
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~--g--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A 723 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKY--G--HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMA 723 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCC--C--eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEe
Confidence 344678999999999999988763 7 88988775211 1146789999999
Q ss_pred CCh
Q 025358 108 CDV 110 (254)
Q Consensus 108 ~p~ 110 (254)
+.-
T Consensus 724 ~G~ 726 (1028)
T PRK06567 724 IGI 726 (1028)
T ss_pred ccc
Confidence 773
No 314
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=34.83 E-value=1e+02 Score=28.68 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
+.+.+.+++.|++++.++ ++.+ +. + . ..|... +|+ .+.+|++|+|+...
T Consensus 98 ~~~~~~~~~~~v~~~~g~-~~~~--~~---~--~-~~v~~~---~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 98 EVRRGQYERNRVDLIQGR-ARFV--DP---H--T-VEVECP---DGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHHHHCCCEEEEEE-EEEe--cC---C--E-EEEEeC---CCceEEEEcCEEEEcCCCC
Confidence 345556778899999875 3333 22 2 1 224333 453 68999999999853
No 315
>PTZ00367 squalene epoxidase; Provisional
Probab=34.12 E-value=1.3e+02 Score=29.31 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=41.7
Q ss_pred hHHHHHHHH---HhCCcEEEcCceeeEEEeccCCC--CcceEEEEEEeecC----------------------CCeEEEc
Q 025358 49 LSGPIRKYI---TDKGGRFHLRWGCREILYDKAAN--AETYVKGLAMSKAT----------------------DKKVVQA 101 (254)
Q Consensus 49 l~~~l~~~l---~~~Gg~i~~~~~V~~i~~~~~~~--g~~~v~gv~l~~~~----------------------~g~~~~a 101 (254)
+.+.+.+.+ ...|++++ ...|+++..+++ + . ++.||++.... +|+++.|
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~-~~~~--~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~A 208 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGP-GFSE--RAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATA 208 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccC-ccCC--eeEEEEEecCCcccccccccccccccccccccccceEEEe
Confidence 455566665 34578886 457888865541 1 1 46778765221 2678999
Q ss_pred CEEEEcCChh-hHhhcC
Q 025358 102 DAYVAACDVP-GIKRLL 117 (254)
Q Consensus 102 D~VV~a~p~~-~~~~Ll 117 (254)
|.||.|=..+ .+++.+
T Consensus 209 dLvVgADG~~S~vR~~l 225 (567)
T PTZ00367 209 PLVVMCDGGMSKFKSRY 225 (567)
T ss_pred CEEEECCCcchHHHHHc
Confidence 9999887765 477655
No 316
>PLN02507 glutathione reductase
Probab=33.49 E-value=1.2e+02 Score=28.98 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=29.6
Q ss_pred HHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChh
Q 025358 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP 111 (254)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~ 111 (254)
..+.+++.|++++.+ +++.+..+ -..|.+. +|+ .+.+|++|+|+...
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~vd~~--------~v~V~~~---~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIVGPN--------EVEVTQL---DGTKLRYTAKHILIATGSR 178 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEecCC--------EEEEEeC---CCcEEEEEcCEEEEecCCC
Confidence 334566688888877 45554322 1234443 554 57899999998854
No 317
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=32.27 E-value=63 Score=31.03 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
+-..|.+.+-+-- -+|+-+ .|..|.+.+..+|.-++.||++. ||..+.|+.||.++..
T Consensus 126 Ykk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~---dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 126 YKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLV---DGTVVYAESVILTTGT 184 (679)
T ss_pred HHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEe---cCcEeccceEEEeecc
Confidence 3455666655432 344444 45556554431332247899998 9999999999999874
No 318
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=30.75 E-value=95 Score=32.58 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.-.+.+++.|++|++|+.| .+.++. .....+|+||+|+..+
T Consensus 590 evL~~die~l~~~GVe~~~gt~V-di~le~------------------L~~~gYDaVILATGA~ 634 (1019)
T PRK09853 590 ELIQHDIEFVKAHGVKFEFGCSP-DLTVEQ------------------LKNEGYDYVVVAIGAD 634 (1019)
T ss_pred HHHHHHHHHHHHcCCEEEeCcee-EEEhhh------------------heeccCCEEEECcCCC
Confidence 45566678889999999999987 343332 1122367888877754
No 319
>PRK06370 mercuric reductase; Validated
Probab=28.84 E-value=1.2e+02 Score=28.30 Aligned_cols=45 Identities=4% Similarity=-0.006 Sum_probs=30.9
Q ss_pred HHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+.+++. |++++.++.+. .++ . .|.+ +|+.+.+|++|+|+...
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~~---~-----~v~v----~~~~~~~d~lViATGs~ 144 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ESP---N-----TVRV----GGETLRAKRIFINTGAR 144 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---ccC---C-----EEEE----CcEEEEeCEEEEcCCCC
Confidence 345566776 99999998752 232 2 2444 46778999999998864
No 320
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.28 E-value=1.7e+02 Score=27.47 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=32.0
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.++..|++++.+. ++.+..+++ + ..|.+.. .+|+.+++|.+|+|+...
T Consensus 105 ~~~~~~~~~~v~~~~g~-~~~~~~~~~--~----~~v~v~~-~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 105 GIEGLFKKNKITVLKGR-GSFVGKTDA--G----YEIKVTG-EDETVITAKHVIIATGSE 156 (475)
T ss_pred HHHHHHHhCCCEEEEEE-EEEecCCCC--C----CEEEEec-CCCeEEEeCEEEEeCCCC
Confidence 44556677899988765 444443331 2 2244431 135689999999999864
No 321
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.26 E-value=1.4e+02 Score=28.11 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=28.9
Q ss_pred HHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCC--eEEEcCEEEEcCChh
Q 025358 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g--~~~~aD~VV~a~p~~ 111 (254)
.+.+++.|++++.++.. - .+. . ...|... +| +++.+|++|.|+...
T Consensus 100 ~~~~~~~gV~~~~g~a~-~--~~~---~---~v~v~~~---~g~~~~~~~d~lViATGs~ 147 (471)
T PRK06467 100 AGMAKGRKVTVVNGLGK-F--TGG---N---TLEVTGE---DGKTTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHHHHhCCCEEEEEEEE-E--ccC---C---EEEEecC---CCceEEEEcCEEEEeCCCC
Confidence 35567789999987532 2 232 2 2234332 45 478999999998853
No 322
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.94 E-value=1.1e+02 Score=28.18 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=46.5
Q ss_pred CCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEee--cCCCeEEEcCEEEEcCChhh-Hhhc
Q 025358 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPG-IKRL 116 (254)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~--~~~g~~~~aD~VV~a~p~~~-~~~L 116 (254)
++.+.+++.+.+++++.|++|.-.+-..+++.-++ | + ..|.-.+ ++++-+-+.|.|+.|+.-.. +.+|
T Consensus 235 GFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~--g--~-l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 235 GFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD--G--K-LRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred cccHHHHHHHHHHHHHhCCceeecccceeeeeccC--C--c-EEEEeecccccccccchhhhhhhhhccccchhhc
Confidence 55667899999999999999999988888877663 5 3 2232221 12223345899999988654 4443
No 323
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=27.40 E-value=40 Score=33.86 Aligned_cols=57 Identities=5% Similarity=-0.058 Sum_probs=36.3
Q ss_pred eEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
.|++...+.+.+.+...+.+++.|++|++|+.|.+ .+.+. +.....+|+||+|+..+
T Consensus 472 ~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--------------~v~~~---~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 472 YGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--------------TITIE---ELEEEGFKGIFIASGAG 528 (752)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC--------------cCCHH---HHhhcCCCEEEEeCCCC
Confidence 34443333445677778889999999999986521 02222 22334589999988864
No 324
>PLN02852 ferredoxin-NADP+ reductase
Probab=26.93 E-value=2.7e+02 Score=26.63 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=34.9
Q ss_pred CCcEEEcCceeeEEEeccCCCCcceEEEEEEeec--------------CCC--eEEEcCEEEEcCChh
Q 025358 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------------TDK--KVVQADAYVAACDVP 111 (254)
Q Consensus 60 ~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~--------------~~g--~~~~aD~VV~a~p~~ 111 (254)
+|+.|++...-.+|...++.+| +|.++++... ..| +.+++|.||.++...
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~--~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG--HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYK 353 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC--cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCC
Confidence 5799999999999985321025 7888887521 023 257899999998864
No 325
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=24.43 E-value=82 Score=25.34 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
..-.+.|++.|++|+.+..++++.... .+ ++. .+|.||.|=|..-
T Consensus 43 ~~nl~~L~~~g~~V~~~VDat~l~~~~-----------~~----~~~--~FDrIiFNFPH~G 87 (166)
T PF10354_consen 43 EENLEELRELGVTVLHGVDATKLHKHF-----------RL----KNQ--RFDRIIFNFPHVG 87 (166)
T ss_pred HHHHHHHhhcCCccccCCCCCcccccc-----------cc----cCC--cCCEEEEeCCCCC
Confidence 466778899999999999999986442 11 122 4999999999754
No 326
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.80 E-value=3.1e+02 Score=28.89 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=31.9
Q ss_pred HHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEe-------------ecCCCeEEEcCEEEEcCChh
Q 025358 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-------------KATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~-------------~~~~g~~~~aD~VV~a~p~~ 111 (254)
.+.+. .+.|++|+.++.+.+|. + + ++....+. .++++.++++|.||.++...
T Consensus 711 El~~a-leeGVe~~~~~~p~~I~--~---g--~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 711 ELEEA-LEDGVDFKELLSPESFE--D---G--TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred HHHHH-HHcCCEEEeCCceEEEE--C---C--eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 33443 35799999999988886 2 2 23221110 01122368999999998853
No 327
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.40 E-value=2.5e+02 Score=26.55 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=58.4
Q ss_pred CccccHHHHHHHHHHHH---hccCCceeEEeCCCCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 025358 14 CDNISARCMLTIFALFA---TKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (254)
Q Consensus 14 ~~~~SA~~~~~~l~~~~---~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l 90 (254)
.+..++---+...+.|+ ++.+...+.||-=|-++ +.+.+-+...=.||=..++.+|+.|..++. .. ++. +.+
T Consensus 251 ~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~--s~-~~~-~~l 325 (547)
T KOG4405|consen 251 ESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKE--SL-DCK-AIL 325 (547)
T ss_pred cccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeeccc--cc-chh-hhH
Confidence 33355555555556554 34445578888777775 899999999999999999999999999873 20 111 111
Q ss_pred eecCCCeEEEcCEEEEc
Q 025358 91 SKATDKKVVQADAYVAA 107 (254)
Q Consensus 91 ~~~~~g~~~~aD~VV~a 107 (254)
. ..|+.+.+.++|++
T Consensus 326 ~--s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 326 D--SFGQRINAKNFVVS 340 (547)
T ss_pred h--hhcchhcceeeeec
Confidence 1 25777777776665
No 328
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=23.04 E-value=1.8e+02 Score=28.29 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred cchhHHHHHHHHHh-CCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCe--EEEcCEEEEcCChhh
Q 025358 46 DVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (254)
Q Consensus 46 ~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~--~~~aD~VV~a~p~~~ 112 (254)
+..+...|.+.+.+ .+.+|+-+..+.+|.++++ + .+.|+....-.+|+ .+.|++||+|+.-..
T Consensus 137 G~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 137 GHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG--G--GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC--C--cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 34566777777777 6679999999999998873 4 46776643222454 466899999997554
No 329
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=22.91 E-value=1e+02 Score=28.69 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhCC-cEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.+.-++.+.++..+ +++..+ +|+.|..++ . .|.+. +++.+..|..|+++....
T Consensus 58 ~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~---k-----~V~~~---~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 58 EIAIPLRALLRKSGNVQFVQG-EVTDIDRDA---K-----KVTLA---DLGEISYDYLVVALGSET 111 (405)
T ss_pred heeccHHHHhcccCceEEEEE-EEEEEcccC---C-----EEEeC---CCccccccEEEEecCCcC
Confidence 56778999999777 666654 799999886 2 36675 567899999999988643
No 330
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.79 E-value=75 Score=29.70 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChh
Q 025358 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (254)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~ 111 (254)
...+.+...+.+++.|+++++++.|.+. +.+. ++ .+.+|+||+|+..+
T Consensus 189 ~~~~~~~~~~~l~~~gv~~~~~~~v~~~--------------v~~~---~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 189 PKDIVDREVERLLKLGVEIRTNTEVGRD--------------ITLD---EL-RAGYDAVFIGTGAG 236 (457)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEECCc--------------cCHH---HH-HhhCCEEEEccCCC
Confidence 3356777888899999999999887321 1121 22 25689999998864
No 331
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.37 E-value=1.5e+02 Score=27.47 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+...+.+++++--+.+.-..++++|...+. .| ....|++. ||..+++..||+++..
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~-~~--~l~ev~l~---nGavLkaktvIlstGA 323 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAV-EG--GLIEVELA---NGAVLKARTVILATGA 323 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCC-CC--ccEEEEec---CCceeccceEEEecCc
Confidence 6889999999999999999999999998643 12 25678887 9999999999999876
No 332
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=22.05 E-value=89 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=21.4
Q ss_pred EEEeecCCCeEEEcCEEEEcCChhhHhhcCC
Q 025358 88 LAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (254)
Q Consensus 88 v~l~~~~~g~~~~aD~VV~a~p~~~~~~Ll~ 118 (254)
|++. ||+.+++|.||.++....-..+|+
T Consensus 267 V~f~---DG~~~~~D~Ii~~TGy~~~~pfL~ 294 (461)
T PLN02172 267 IVFK---NGKVVYADTIVHCTGYKYHFPFLE 294 (461)
T ss_pred EEEC---CCCCccCCEEEECCcCCccccccC
Confidence 6665 888899999999999765444555
No 333
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.88 E-value=64 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhh
Q 025358 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (254)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~ 112 (254)
.++|.+..+++|.+|. +++.+ ..|+.=.- +..+.-.||.||++.|...
T Consensus 21 AeaLe~~A~~~g~~IK-------VETqG-------s~G~eN~L-T~edI~~Ad~VI~AaD~~i 68 (122)
T COG1445 21 AEALEKAAKKLGVEIK-------VETQG-------AVGIENRL-TAEDIAAADVVILAADIEV 68 (122)
T ss_pred HHHHHHHHHHcCCeEE-------EEcCC-------cccccCcC-CHHHHHhCCEEEEEecccc
Confidence 6788888999998773 44443 13432100 0233456999999998754
No 334
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=20.61 E-value=78 Score=30.00 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhCCcEEEcCceee
Q 025358 48 YLSGPIRKYITDKGGRFHLRWGCR 71 (254)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (254)
.+.+...+.+++.|+++++++.|.
T Consensus 194 ~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 194 AIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred HHHHHHHHHHHhCCCEEECCCEeC
Confidence 456667788899999999999885
No 335
>PRK08818 prephenate dehydrogenase; Provisional
Probab=20.39 E-value=74 Score=29.23 Aligned_cols=63 Identities=5% Similarity=0.085 Sum_probs=36.3
Q ss_pred eeEEeCC-CCcchhHHHHHHHHHhC-CcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCChhhHh
Q 025358 37 LLRMLKG-SPDVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK 114 (254)
Q Consensus 37 ~~g~~~g-~~~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~~~~~ 114 (254)
.+++.++ |+ +-..+++.|++. |.+| ..+...++ + . .. .....-.||.||+|+|+..+.
T Consensus 6 ~I~IIGl~Gl---iGgslA~alk~~~~~~V------~g~D~~d~--~------~-~~--~~~~v~~aDlVilavPv~~~~ 65 (370)
T PRK08818 6 VVGIVGSAGA---YGRWLARFLRTRMQLEV------IGHDPADP--G------S-LD--PATLLQRADVLIFSAPIRHTA 65 (370)
T ss_pred EEEEECCCCH---HHHHHHHHHHhcCCCEE------EEEcCCcc--c------c-CC--HHHHhcCCCEEEEeCCHHHHH
Confidence 4666666 55 677888888864 4444 33332220 1 0 10 011123599999999998877
Q ss_pred hcCCC
Q 025358 115 RLLPS 119 (254)
Q Consensus 115 ~Ll~~ 119 (254)
+++.+
T Consensus 66 ~~l~~ 70 (370)
T PRK08818 66 ALIEE 70 (370)
T ss_pred HHHHH
Confidence 66543
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=20.18 E-value=58 Score=30.47 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.5
Q ss_pred CCcchhHHHHHHHHHhCCcEEEcCceeeEEEeccCCCCcceEEEEEEeecCCCeEEEcCEEEEcCCh
Q 025358 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (254)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~g~~~v~gv~l~~~~~g~~~~aD~VV~a~p~ 110 (254)
.+.+.+.+...+.+++.|++|++++.|.. .+.+. ++ ...+|+||+|+..
T Consensus 180 ~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--------------~v~~~---~~-~~~yd~viiAtGa 228 (449)
T TIGR01316 180 RLPKEIVVTEIKTLKKLGVTFRMNFLVGK--------------TATLE---EL-FSQYDAVFIGTGA 228 (449)
T ss_pred cCCHHHHHHHHHHHHhCCcEEEeCCccCC--------------cCCHH---HH-HhhCCEEEEeCCC
Confidence 34445677778889999999999986521 02221 12 2357888888876
Done!