Query 025359
Match_columns 254
No_of_seqs 136 out of 249
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 08:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025359.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025359hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b60a2 f.37.1.1 (A:10-328) Mu 21.2 83 0.006 23.4 5.8 25 16-40 156-180 (319)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 20.6 84 0.0061 21.3 5.4 37 22-58 7-43 (158)
3 d1xrda1 f.3.1.1 (A:1-52) Light 19.8 25 0.0018 22.8 1.9 13 163-175 17-30 (52)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 18.4 19 0.0014 25.1 1.1 15 49-63 63-77 (79)
5 d1iwga8 f.35.1.1 (A:513-566,A: 18.2 79 0.0057 24.6 5.2 57 17-73 110-178 (222)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 17.6 38 0.0028 20.3 2.2 13 165-177 22-34 (37)
7 d2gola1 a.61.1.1 (A:7-107) HIV 15.7 21 0.0015 26.1 0.8 13 49-61 89-101 (101)
8 d1j1va_ a.4.12.2 (A:) Chromoso 13.9 52 0.0038 22.6 2.6 31 32-62 45-75 (94)
9 d1ep3a_ c.1.4.1 (A:) Dihydroor 12.5 76 0.0055 25.1 3.6 31 30-60 278-308 (311)
10 d2hyda2 f.37.1.1 (A:1-323) Put 12.2 1.3E+02 0.0093 22.4 4.8 24 15-38 160-183 (323)
No 1
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=21.17 E-value=83 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 025359 16 WAVAVVCFVLVTISIIIEHIIHLIG 40 (254)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~lg 40 (254)
|.++.++.+++.+.+++-....+-.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHH
Confidence 6677777777777776655544433
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=20.64 E-value=84 Score=21.31 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHH
Q 025359 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKI 58 (254)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKi 58 (254)
..|+++|+|+.==++=.+..+.++.+.+.....+.-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666677777777776655544444433
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=19.79 E-value=25 Score=22.83 Aligned_cols=13 Identities=62% Similarity=1.058 Sum_probs=10.4
Q ss_pred HHHHHHHHHHH-HH
Q 025359 163 LHIFIFVLALF-HV 175 (254)
Q Consensus 163 LHiFIFVLAv~-HV 175 (254)
++.|.|+||++ |.
T Consensus 17 ~~~fL~~LAl~IHf 30 (52)
T d1xrda1 17 LATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999965 44
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=18.40 E-value=19 Score=25.12 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHH
Q 025359 49 RALYEALEKIKSELM 63 (254)
Q Consensus 49 kaL~eALeKiK~ELM 63 (254)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678999999999974
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=18.15 E-value=79 Score=24.56 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhh--hhcchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 025359 17 AVAVVCFVLVTISIIIEHIIHLIGKWLT--KKHKRALYEALEKIKSEL----------MLLGFISLLLT 73 (254)
Q Consensus 17 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lk--kk~kkaL~eALeKiK~EL----------MLLGFISLLLt 73 (254)
-+.+....++++++.+...+|.+..+.+ +++.++..||..+--.|- +.+||++|++.
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 3455667778899999999999998865 233345555554443333 37888888774
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.57 E-value=38 Score=20.30 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 025359 165 IFIFVLALFHVLY 177 (254)
Q Consensus 165 iFIFVLAv~HV~y 177 (254)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999876655
No 7
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=15.67 E-value=21 Score=26.12 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q 025359 49 RALYEALEKIKSE 61 (254)
Q Consensus 49 kaL~eALeKiK~E 61 (254)
+.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 4457999999987
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=13.92 E-value=52 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 025359 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (254)
Q Consensus 32 ~Er~lH~lgk~Lkkk~kkaL~eALeKiK~EL 62 (254)
....+-.+|+.|..|.-.+...|+.|+++++
T Consensus 45 ~~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3446778899996555588999999998754
No 9
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=12.49 E-value=76 Score=25.13 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHhhhhcchHHHHHHHHHHH
Q 025359 30 IIIEHIIHLIGKWLTKKHKRALYEALEKIKS 60 (254)
Q Consensus 30 l~~Er~lH~lgk~Lkkk~kkaL~eALeKiK~ 60 (254)
.++.+++..|.+|+++++=+.+-|...|+|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4688999999999999988899999999986
No 10
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=12.16 E-value=1.3e+02 Score=22.37 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 025359 15 TWAVAVVCFVLVTISIIIEHIIHL 38 (254)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~ 38 (254)
.|.+++++.+++.+.+++-..+.+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~ 183 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFG 183 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 366666666666666666554433
Done!