BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025360
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Inorganic Phosphate
pdb|3OCZ|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With The Inhibitor Adenosine
5-O-Thiomonophosphate
Length = 262
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
D+D+T + N Y + P+D + W A+PG + N + KV V
Sbjct: 64 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
T R + T T D++ GF G E DK A + +EI KQ GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
+GD D
Sbjct: 179 VGDNLDDF 186
>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|B Chain B, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
pdb|3PCT|C Chain C, Structure Of The Class C Acid Phosphatase From Pasteurella
Multocida
Length = 260
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
D+D+T I N Y + + P + W AIPG + N + +G + V
Sbjct: 64 DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
+ R ++ T D++ GF G + DK +V + KQ+ + GY I
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSNKSVRF-----KQVEDMGYDIVLF 178
Query: 227 IGDQWSDLQGECTGNRTFKLPNP 249
+GD +D G+ T+K N
Sbjct: 179 VGDNLNDF-----GDATYKKSNA 196
>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D64n Complexed With 5'amp
Length = 262
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
++D+T + N Y + P+D + W A+PG + N + KV V
Sbjct: 64 NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
T R + T T D++ GF G E DK A + +EI KQ GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
+GD D
Sbjct: 179 VGDNLDDF 186
>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With Nmn
pdb|3OCV|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 5'-Amp
pdb|3OCW|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 3'-Amp
pdb|3OCX|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Mutant D66n Complexed With 2'-Amp
Length = 262
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
D+++T + N Y + P+D + W A+PG + N + KV V
Sbjct: 64 DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
T R + T T D++ GF G E DK A + +EI KQ GY I
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
+GD D
Sbjct: 179 VGDNLDDF 186
>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase
pdb|3ET5|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid
Phosphatase Complexed With Tungstate
Length = 255
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
D+D+T + N Y + P+D + W A+PG + N + KV V
Sbjct: 65 DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
T R + + T D++ GF G E DK A + +EI KQ GY I
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 179
Query: 227 IGDQWSDL 234
+GD D
Sbjct: 180 VGDNLDDF 187
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 751 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 810
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 811 AEVLNCMTTVVEKV 824
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 712 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 771
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 772 AEVLNCMTTVVEKV 785
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 30.4 bits (67), Expect = 0.88, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 46 LAVEANNVRAWRTVPTQCLRYVESYMIGGQ-YDRDVELVVEQILCYVNEVVLSG--DGMD 102
+A + VR RT+ + L+ VE+Y+ + D V+++VE +L V E ++ D D
Sbjct: 714 IATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773
Query: 103 AWILDVDDTCISNV 116
A +L+ T + V
Sbjct: 774 AEVLNCMTTVVEKV 787
>pdb|4IFD|E Chain E, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 267
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 72 IGGQYDRDVELVVEQILCYVNEVVLSGDGMDA 103
I GQ RD LVVE I +N+V+ SG G+D+
Sbjct: 84 IAGQ--RDDALVVETITSLLNKVLKSGSGVDS 113
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 3 QPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEAN-----NVRAWR 57
+ +KEV+ FL A K G + M GD +S + E + N+R +
Sbjct: 393 EKVKEVVDFLNAAY--KEIGNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYV 450
Query: 58 TVP------TQCLRYVESYMIGGQYDRDVELVV--EQILCYVNEVVLSGDGMDAWILDVD 109
+P T + S + R+V VV E +L Y GD + A IL VD
Sbjct: 451 EIPEAKYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYA-----GGDDVLA-ILPVD 504
Query: 110 DTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVIL 165
V Y K +G + + W L G + L++ L ++ K
Sbjct: 505 KAL--EVAYKIRKEFGKSFENGSLLPGWKLSAGILIVHYKHPLYDALEKARDLLNNKAKN 562
Query: 166 VTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE 219
V G+D G + R + VG+E + V Y SE+RK+LLEE
Sbjct: 563 VPGKDTLAIGLLKRSGSYYISLVGWELI-----------RVFYNSELRKKLLEE 605
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 3 QPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEAN-----NVRAWR 57
+ +KEV+ FL A K G + M GD +S + E + N+R +
Sbjct: 378 EKVKEVVDFLNAAY--KEIGNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYV 435
Query: 58 TVP------TQCLRYVESYMIGGQYDRDVELVV--EQILCYVNEVVLSGDGMDAWILDVD 109
+P T + S + R+V VV E +L Y GD + A IL VD
Sbjct: 436 EIPEAKYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYA-----GGDDVLA-ILPVD 489
Query: 110 DTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVIL 165
V Y K +G + + W L G + L++ L ++ K
Sbjct: 490 KAL--EVAYKIRKEFGKSFENGSLLPGWKLSAGILIVHYKHPLYDALEKARDLLNNKAKN 547
Query: 166 VTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE 219
V G+D G + R + VG+E + V Y SE+RK+LLEE
Sbjct: 548 VPGKDTLAIGLLKRSGSYYISLVGWELI-----------RVFYNSELRKKLLEE 590
>pdb|4AS2|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS3|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
Length = 327
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 152 LFNKLIESGLKVILVTGRDEETFGQVTRD-----NLHNQGFVGYERLIMRTAADKGKNAV 206
L+NKL+E+G++V +++ EE V D N + +G L+ KN
Sbjct: 151 LYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLL--------KNRK 202
Query: 207 TYK-SEIRKQLLEEGYRIWGNI 227
T + + RKQ+ E Y N+
Sbjct: 203 TGELTTARKQIAEGKYDPKANL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,728,870
Number of Sequences: 62578
Number of extensions: 388080
Number of successful extensions: 792
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 21
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)