Query 025360
Match_columns 254
No_of_seqs 311 out of 1481
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 2.8E-73 6E-78 491.6 21.0 218 36-254 12-229 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 6.7E-71 1.5E-75 483.9 19.7 241 7-252 2-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 7.2E-54 1.6E-58 373.1 4.8 211 38-253 13-228 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 3.5E-36 7.7E-41 266.5 21.5 180 64-252 37-238 (266)
5 COG2503 Predicted secreted aci 100.0 2.4E-30 5.2E-35 221.5 16.8 179 66-252 43-242 (274)
6 PRK11009 aphA acid phosphatase 99.9 9.3E-23 2E-27 178.3 13.2 142 100-251 62-218 (237)
7 TIGR01672 AphA HAD superfamily 99.8 2.3E-19 4.9E-24 157.0 14.5 137 98-246 60-210 (237)
8 COG0637 Predicted phosphatase/ 99.7 4.3E-16 9.3E-21 135.0 11.8 142 101-249 2-188 (221)
9 PRK14988 GMP/IMP nucleotidase; 99.7 1.1E-15 2.3E-20 132.6 12.4 102 142-250 91-197 (224)
10 COG0546 Gph Predicted phosphat 99.7 1.9E-15 4.1E-20 130.6 13.3 98 143-247 88-189 (220)
11 PLN02770 haloacid dehalogenase 99.6 2.8E-15 6.1E-20 131.8 13.8 100 142-248 106-209 (248)
12 PRK13288 pyrophosphatase PpaX; 99.6 3.8E-15 8.1E-20 127.5 13.4 140 101-247 3-182 (214)
13 PLN03243 haloacid dehalogenase 99.6 5.3E-15 1.1E-19 131.3 14.6 100 142-248 107-210 (260)
14 PRK13226 phosphoglycolate phos 99.6 4.6E-15 1E-19 128.8 13.9 98 142-246 93-194 (229)
15 PLN02575 haloacid dehalogenase 99.6 6.2E-15 1.3E-19 136.8 14.5 100 142-248 214-317 (381)
16 TIGR01422 phosphonatase phosph 99.6 3.1E-15 6.8E-20 131.4 11.7 100 142-248 97-202 (253)
17 TIGR03351 PhnX-like phosphonat 99.6 4.8E-15 1E-19 127.1 12.1 100 142-248 85-192 (220)
18 PRK10826 2-deoxyglucose-6-phos 99.6 1.5E-14 3.2E-19 124.6 14.5 102 142-250 90-195 (222)
19 TIGR01990 bPGM beta-phosphoglu 99.6 8.2E-15 1.8E-19 121.9 12.5 96 143-247 86-185 (185)
20 PRK13225 phosphoglycolate phos 99.6 9.6E-15 2.1E-19 130.5 13.4 141 99-248 60-240 (273)
21 PRK11587 putative phosphatase; 99.6 1E-14 2.3E-19 125.4 13.1 101 141-249 80-184 (218)
22 TIGR02253 CTE7 HAD superfamily 99.6 1.4E-14 3E-19 124.1 13.7 102 142-250 92-198 (221)
23 TIGR01449 PGP_bact 2-phosphogl 99.6 1.3E-14 2.9E-19 123.4 13.3 99 142-247 83-185 (213)
24 TIGR01428 HAD_type_II 2-haloal 99.6 2.4E-14 5.2E-19 121.0 14.2 101 142-249 90-194 (198)
25 TIGR01454 AHBA_synth_RP 3-amin 99.6 1.5E-14 3.2E-19 123.0 12.9 99 141-246 72-174 (205)
26 PHA02530 pseT polynucleotide k 99.6 2.7E-14 5.7E-19 128.4 13.8 169 59-247 112-296 (300)
27 PRK13478 phosphonoacetaldehyde 99.6 3.6E-14 7.9E-19 125.8 12.1 100 142-248 99-204 (267)
28 PRK13223 phosphoglycolate phos 99.6 9E-14 2E-18 124.0 14.5 99 143-248 100-202 (272)
29 PLN02940 riboflavin kinase 99.5 7.1E-14 1.5E-18 130.4 13.9 101 142-249 91-196 (382)
30 TIGR02009 PGMB-YQAB-SF beta-ph 99.5 7.4E-14 1.6E-18 116.1 12.3 95 142-245 86-184 (185)
31 PRK06698 bifunctional 5'-methy 99.5 2.3E-14 5E-19 136.6 10.3 100 142-248 328-428 (459)
32 PRK10725 fructose-1-P/6-phosph 99.5 1.6E-13 3.4E-18 114.7 13.4 98 142-248 86-187 (188)
33 TIGR01548 HAD-SF-IA-hyp1 haloa 99.5 1E-13 2.2E-18 117.4 11.8 88 144-238 106-195 (197)
34 PRK13222 phosphoglycolate phos 99.5 3.5E-13 7.5E-18 115.5 15.1 100 142-248 91-194 (226)
35 TIGR01656 Histidinol-ppas hist 99.5 8.1E-14 1.8E-18 113.1 10.1 126 102-248 1-146 (147)
36 PRK09449 dUMP phosphatase; Pro 99.5 2.1E-13 4.6E-18 117.2 11.4 97 143-247 94-196 (224)
37 PLN02779 haloacid dehalogenase 99.5 5.3E-13 1.2E-17 119.9 14.4 99 143-249 143-248 (286)
38 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 1.3E-13 2.8E-18 109.4 9.1 120 102-246 1-130 (132)
39 TIGR01993 Pyr-5-nucltdase pyri 99.5 3.5E-13 7.5E-18 112.7 11.6 94 142-245 82-183 (184)
40 PRK09456 ?-D-glucose-1-phospha 99.5 2.6E-13 5.6E-18 115.1 10.7 101 143-250 83-188 (199)
41 TIGR02252 DREG-2 REG-2-like, H 99.5 3.9E-13 8.4E-18 113.9 11.6 93 144-244 105-202 (203)
42 cd01427 HAD_like Haloacid deha 99.5 1.4E-13 3E-18 106.9 7.4 118 103-245 1-138 (139)
43 TIGR01509 HAD-SF-IA-v3 haloaci 99.5 1.3E-12 2.8E-17 108.0 12.9 95 143-245 84-182 (183)
44 PRK10563 6-phosphogluconate ph 99.4 9.8E-13 2.1E-17 113.0 12.3 95 142-246 86-185 (221)
45 TIGR01549 HAD-SF-IA-v1 haloaci 99.4 2.9E-13 6.3E-18 109.7 8.4 128 103-238 1-151 (154)
46 PF13419 HAD_2: Haloacid dehal 99.4 3.4E-13 7.4E-18 109.5 8.3 99 141-246 74-176 (176)
47 PHA02597 30.2 hypothetical pro 99.4 9.1E-13 2E-17 111.3 10.7 138 101-248 2-175 (197)
48 COG2179 Predicted hydrolase of 99.4 2.5E-12 5.4E-17 105.4 11.8 110 97-246 24-137 (175)
49 TIGR02247 HAD-1A3-hyp Epoxide 99.4 1.8E-12 3.8E-17 110.6 11.3 103 142-249 92-198 (211)
50 TIGR01689 EcbF-BcbF capsule bi 99.4 1.7E-12 3.8E-17 103.0 9.2 76 101-198 1-88 (126)
51 TIGR02254 YjjG/YfnB HAD superf 99.4 2.7E-12 5.8E-17 109.8 11.0 97 143-247 96-198 (224)
52 TIGR00213 GmhB_yaeD D,D-heptos 99.4 2.6E-12 5.7E-17 107.2 10.6 122 102-246 2-150 (176)
53 TIGR01261 hisB_Nterm histidino 99.4 2.1E-12 4.6E-17 106.8 9.9 128 102-248 2-148 (161)
54 TIGR01664 DNA-3'-Pase DNA 3'-p 99.4 1.9E-12 4.1E-17 107.6 9.3 124 101-243 13-158 (166)
55 PLN02954 phosphoserine phospha 99.4 1.6E-11 3.4E-16 105.6 13.5 140 100-243 11-191 (224)
56 PRK08942 D,D-heptose 1,7-bisph 99.4 6.8E-12 1.5E-16 105.0 10.9 126 101-248 3-148 (181)
57 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.3 1.3E-11 2.8E-16 103.8 12.4 105 142-250 78-193 (201)
58 smart00775 LNS2 LNS2 domain. T 99.3 1.1E-11 2.4E-16 102.1 11.4 119 103-238 1-136 (157)
59 PRK10748 flavin mononucleotide 99.3 9.2E-12 2E-16 108.8 11.0 93 143-248 112-209 (238)
60 PRK06769 hypothetical protein; 99.3 7.6E-12 1.6E-16 104.4 9.4 122 100-247 3-137 (173)
61 PLN02919 haloacid dehalogenase 99.3 2.2E-11 4.7E-16 126.5 14.8 98 144-249 161-264 (1057)
62 TIGR01489 DKMTPPase-SF 2,3-dik 99.3 5.4E-11 1.2E-15 98.9 13.8 99 142-244 70-185 (188)
63 TIGR00338 serB phosphoserine p 99.3 4.3E-11 9.3E-16 102.5 13.3 103 142-249 83-197 (219)
64 PRK13582 thrH phosphoserine ph 99.3 1.5E-11 3.2E-16 104.2 9.8 91 142-238 66-161 (205)
65 TIGR01685 MDP-1 magnesium-depe 99.3 4.9E-12 1.1E-16 105.9 6.7 138 101-249 2-159 (174)
66 PF08235 LNS2: LNS2 (Lipin/Ned 99.3 2.1E-11 4.6E-16 100.0 9.3 127 103-246 1-148 (157)
67 TIGR01681 HAD-SF-IIIC HAD-supe 99.2 6.5E-11 1.4E-15 94.1 8.3 111 102-236 1-123 (128)
68 COG1011 Predicted hydrolase (H 99.2 2.1E-10 4.5E-15 98.4 12.1 100 143-250 98-202 (229)
69 TIGR01670 YrbI-phosphatas 3-de 99.2 1.9E-11 4.1E-16 100.2 5.2 117 101-249 1-120 (154)
70 PRK09552 mtnX 2-hydroxy-3-keto 99.2 1.6E-10 3.5E-15 99.5 10.7 138 101-245 3-184 (219)
71 PRK05446 imidazole glycerol-ph 99.2 3E-10 6.5E-15 104.9 12.4 127 101-249 2-149 (354)
72 KOG2914 Predicted haloacid-hal 99.2 1.5E-10 3.2E-15 100.3 9.7 142 99-249 8-198 (222)
73 PLN02811 hydrolase 99.2 2.3E-10 4.9E-15 98.6 10.7 101 142-249 76-186 (220)
74 smart00577 CPDc catalytic doma 99.2 4.2E-11 9.2E-16 97.4 5.5 123 101-238 2-132 (148)
75 COG3700 AphA Acid phosphatase 99.1 5.4E-10 1.2E-14 92.7 11.0 144 97-251 59-218 (237)
76 TIGR01493 HAD-SF-IA-v2 Haloaci 99.1 9.8E-11 2.1E-15 96.8 6.5 82 142-238 88-173 (175)
77 TIGR01668 YqeG_hyp_ppase HAD s 99.1 7.2E-10 1.6E-14 92.2 11.2 110 99-247 23-136 (170)
78 TIGR02726 phenyl_P_delta pheny 99.1 1.5E-10 3.3E-15 96.5 6.3 117 101-248 7-125 (169)
79 PRK09484 3-deoxy-D-manno-octul 99.1 1.4E-10 3E-15 97.7 5.2 112 100-242 20-134 (183)
80 TIGR02137 HSK-PSP phosphoserin 99.1 2.4E-09 5.2E-14 91.7 12.4 100 142-247 66-171 (203)
81 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.0 2.5E-09 5.4E-14 90.4 11.0 103 143-249 86-200 (202)
82 PF13344 Hydrolase_6: Haloacid 99.0 2.9E-09 6.2E-14 81.4 9.5 58 104-189 1-58 (101)
83 TIGR03333 salvage_mtnX 2-hydro 99.0 6.6E-09 1.4E-13 89.2 12.6 99 142-245 68-180 (214)
84 TIGR01488 HAD-SF-IB Haloacid D 99.0 5E-09 1.1E-13 86.4 11.0 94 141-238 70-175 (177)
85 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.0 2.8E-09 6.1E-14 93.3 9.0 102 99-236 6-110 (242)
86 TIGR01684 viral_ppase viral ph 98.9 6.4E-09 1.4E-13 93.2 9.9 73 99-199 124-197 (301)
87 TIGR01663 PNK-3'Pase polynucle 98.9 5.3E-09 1.1E-13 101.1 9.8 118 99-238 166-301 (526)
88 PRK11133 serB phosphoserine ph 98.9 2.5E-08 5.4E-13 91.2 12.8 103 142-249 179-291 (322)
89 PLN02645 phosphoglycolate phos 98.9 9.1E-09 2E-13 93.6 9.6 70 100-197 27-96 (311)
90 TIGR01686 FkbH FkbH-like domai 98.8 1.4E-08 3E-13 92.7 9.2 113 100-239 2-121 (320)
91 PRK11590 hypothetical protein; 98.8 1.1E-07 2.4E-12 81.6 12.8 103 143-249 94-205 (211)
92 PF09419 PGP_phosphatase: Mito 98.8 1.1E-07 2.4E-12 79.0 12.0 120 96-249 36-166 (168)
93 PRK08238 hypothetical protein; 98.8 6.6E-08 1.4E-12 92.8 11.8 136 99-245 8-163 (479)
94 PF06941 NT5C: 5' nucleotidase 98.7 3.6E-08 7.9E-13 83.3 8.3 126 103-249 4-164 (191)
95 PHA03398 viral phosphatase sup 98.7 5.8E-08 1.2E-12 87.2 9.4 73 99-199 126-199 (303)
96 COG0241 HisB Histidinol phosph 98.7 1.8E-07 3.8E-12 78.6 11.7 127 101-248 5-150 (181)
97 COG0560 SerB Phosphoserine pho 98.7 3E-07 6.5E-12 79.4 12.5 102 143-248 76-188 (212)
98 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.7 1E-07 2.3E-12 84.3 9.9 64 102-189 2-65 (257)
99 TIGR01452 PGP_euk phosphoglyco 98.7 1.3E-07 2.7E-12 84.6 10.1 61 101-189 2-62 (279)
100 PRK10444 UMP phosphatase; Prov 98.7 1.5E-07 3.2E-12 83.1 10.2 93 102-222 2-103 (248)
101 COG0647 NagD Predicted sugar p 98.7 7.6E-08 1.7E-12 85.8 7.8 98 99-224 6-114 (269)
102 PF06888 Put_Phosphatase: Puta 98.6 5.2E-07 1.1E-11 79.0 12.7 132 103-238 2-186 (234)
103 KOG1615 Phosphoserine phosphat 98.6 4.7E-07 1E-11 76.3 11.6 139 101-243 16-195 (227)
104 KOG3085 Predicted hydrolase (H 98.6 9.4E-08 2E-12 83.5 7.8 100 143-251 112-217 (237)
105 TIGR01691 enolase-ppase 2,3-di 98.6 3.5E-07 7.5E-12 79.4 10.6 106 134-247 83-196 (220)
106 COG1778 Low specificity phosph 98.6 1.1E-07 2.4E-12 77.5 6.0 105 101-237 8-115 (170)
107 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.5 3.1E-07 6.7E-12 80.9 7.5 61 102-190 2-62 (249)
108 PRK01158 phosphoglycolate phos 98.5 4.5E-07 9.8E-12 78.0 7.7 59 101-189 3-61 (230)
109 PRK10530 pyridoxal phosphate ( 98.5 4.7E-07 1E-11 79.8 8.0 59 101-189 3-61 (272)
110 PRK10513 sugar phosphate phosp 98.5 7E-07 1.5E-11 78.9 9.0 59 101-189 3-61 (270)
111 PRK15126 thiamin pyrimidine py 98.5 5.2E-07 1.1E-11 80.0 8.0 60 101-190 2-61 (272)
112 PRK10976 putative hydrolase; P 98.5 5.4E-07 1.2E-11 79.4 7.7 59 101-189 2-60 (266)
113 PF12710 HAD: haloacid dehalog 98.5 6E-07 1.3E-11 74.6 7.6 85 147-236 92-190 (192)
114 TIGR01544 HAD-SF-IE haloacid d 98.4 4.8E-06 1.1E-10 74.5 13.6 103 132-238 109-228 (277)
115 PRK00192 mannosyl-3-phosphogly 98.4 6.3E-07 1.4E-11 79.8 7.8 60 101-190 4-63 (273)
116 TIGR01487 SPP-like sucrose-pho 98.4 8.2E-07 1.8E-11 76.0 7.5 57 102-188 2-58 (215)
117 TIGR02461 osmo_MPG_phos mannos 98.4 1.1E-06 2.3E-11 76.5 7.7 55 104-189 2-56 (225)
118 TIGR02463 MPGP_rel mannosyl-3- 98.4 1.1E-06 2.4E-11 75.4 7.7 55 104-188 2-56 (221)
119 TIGR01545 YfhB_g-proteo haloac 98.4 6.3E-06 1.4E-10 70.9 12.3 103 143-249 93-204 (210)
120 TIGR01482 SPP-subfamily Sucros 98.4 8.4E-07 1.8E-11 76.0 6.7 55 104-188 1-55 (225)
121 TIGR02251 HIF-SF_euk Dullard-l 98.4 1.4E-06 3.1E-11 71.9 7.7 124 101-238 1-129 (162)
122 PF08282 Hydrolase_3: haloacid 98.3 1.2E-06 2.6E-11 75.0 7.2 56 104-189 1-56 (254)
123 COG0561 Cof Predicted hydrolas 98.3 1.3E-06 2.9E-11 77.0 7.6 59 101-189 3-61 (264)
124 PRK03669 mannosyl-3-phosphogly 98.3 1.5E-06 3.3E-11 77.2 7.7 59 100-188 6-64 (271)
125 PRK12702 mannosyl-3-phosphogly 98.3 1.7E-06 3.7E-11 77.8 7.8 59 101-189 1-59 (302)
126 TIGR00099 Cof-subfamily Cof su 98.3 1.9E-06 4.2E-11 75.6 7.9 56 104-189 2-57 (256)
127 TIGR01486 HAD-SF-IIB-MPGP mann 98.3 1.9E-06 4.2E-11 75.8 7.6 56 104-189 2-57 (256)
128 PF08645 PNK3P: Polynucleotide 98.3 1E-06 2.2E-11 72.7 4.4 111 102-233 1-130 (159)
129 PTZ00174 phosphomannomutase; P 98.2 4.3E-06 9.4E-11 73.4 8.3 54 100-183 4-57 (247)
130 TIGR01460 HAD-SF-IIA Haloacid 98.2 2.7E-06 5.8E-11 74.3 6.6 58 104-189 1-59 (236)
131 PTZ00445 p36-lilke protein; Pr 98.2 2E-05 4.3E-10 67.7 11.2 167 65-250 11-208 (219)
132 TIGR02244 HAD-IG-Ncltidse HAD 98.2 9.9E-06 2.1E-10 74.7 10.0 100 143-246 183-322 (343)
133 TIGR02250 FCP1_euk FCP1-like p 98.2 2.6E-05 5.7E-10 64.2 11.2 142 99-252 4-156 (156)
134 PLN02887 hydrolase family prot 98.2 6.8E-06 1.5E-10 80.7 8.7 59 100-188 307-365 (580)
135 KOG3120 Predicted haloacid deh 98.2 1.9E-05 4.2E-10 67.9 10.1 134 98-235 10-196 (256)
136 COG4850 Uncharacterized conser 98.2 1.4E-05 3E-10 72.2 9.6 125 101-236 161-293 (373)
137 PF00702 Hydrolase: haloacid d 98.1 2.9E-06 6.3E-11 71.5 4.3 86 142-238 125-212 (215)
138 PF11019 DUF2608: Protein of u 98.1 3E-05 6.4E-10 68.7 9.9 135 100-236 19-193 (252)
139 TIGR01456 CECR5 HAD-superfamil 98.0 1.1E-05 2.4E-10 73.7 6.9 58 103-188 2-64 (321)
140 TIGR01484 HAD-SF-IIB HAD-super 98.0 1.8E-05 3.8E-10 67.0 7.5 52 104-184 2-53 (204)
141 TIGR01525 ATPase-IB_hvy heavy 98.0 2.5E-05 5.5E-10 76.5 9.3 103 99-239 362-465 (556)
142 KOG3109 Haloacid dehalogenase- 97.9 8.9E-05 1.9E-09 63.8 10.0 113 128-246 80-204 (244)
143 TIGR01512 ATPase-IB2_Cd heavy 97.9 2.2E-05 4.8E-10 76.6 7.0 83 142-239 360-443 (536)
144 PRK14502 bifunctional mannosyl 97.9 3.2E-05 7E-10 76.6 8.1 61 99-189 414-474 (694)
145 KOG2116 Protein involved in pl 97.9 9.7E-05 2.1E-09 72.1 10.7 120 101-238 530-667 (738)
146 KOG2882 p-Nitrophenyl phosphat 97.9 2.7E-05 5.8E-10 69.8 6.4 97 99-223 20-128 (306)
147 PF12689 Acid_PPase: Acid Phos 97.8 0.00015 3.2E-09 60.5 9.7 133 101-248 3-152 (169)
148 PRK10187 trehalose-6-phosphate 97.8 4.5E-05 9.7E-10 67.9 7.1 62 101-187 14-76 (266)
149 TIGR01485 SPP_plant-cyano sucr 97.8 4.5E-05 9.7E-10 66.9 6.7 61 102-189 2-62 (249)
150 TIGR01511 ATPase-IB1_Cu copper 97.8 0.00016 3.5E-09 71.0 11.1 82 142-239 403-484 (562)
151 PLN02423 phosphomannomutase 97.7 8.2E-05 1.8E-09 65.4 6.8 44 100-170 5-49 (245)
152 KOG3040 Predicted sugar phosph 97.7 0.00027 5.9E-09 60.5 8.9 100 100-238 6-106 (262)
153 PF05152 DUF705: Protein of un 97.6 0.00027 5.8E-09 63.1 8.8 73 99-198 120-192 (297)
154 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.6 1.4E-05 3.1E-10 69.8 0.8 94 145-246 139-240 (242)
155 TIGR02471 sucr_syn_bact_C sucr 97.6 9.2E-05 2E-09 64.2 5.6 53 104-188 2-54 (236)
156 TIGR01522 ATPase-IIA2_Ca golgi 97.6 0.0002 4.3E-09 73.9 8.7 93 142-239 526-635 (884)
157 COG5083 SMP2 Uncharacterized p 97.5 0.00046 9.9E-09 64.8 8.5 123 100-238 374-511 (580)
158 PF03031 NIF: NLI interacting 97.5 0.00015 3.3E-09 59.1 4.6 119 102-236 1-121 (159)
159 COG4359 Uncharacterized conser 97.5 0.0017 3.6E-08 54.7 10.5 96 142-242 71-180 (220)
160 PLN03017 trehalose-phosphatase 97.4 0.00052 1.1E-08 63.8 8.3 69 88-182 97-166 (366)
161 PLN02151 trehalose-phosphatase 97.4 0.00064 1.4E-08 63.0 7.8 62 97-184 94-155 (354)
162 COG4996 Predicted phosphatase 97.3 0.0013 2.8E-08 52.5 7.4 88 103-198 2-91 (164)
163 PRK14501 putative bifunctional 97.2 0.00077 1.7E-08 68.1 6.6 64 99-187 490-554 (726)
164 PRK11033 zntA zinc/cadmium/mer 97.1 0.0015 3.3E-08 66.2 8.4 81 142-239 566-646 (741)
165 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.1 0.00027 5.9E-09 62.5 2.0 97 145-248 121-225 (257)
166 PLN02382 probable sucrose-phos 97.1 0.0019 4.1E-08 61.2 7.7 66 97-189 5-70 (413)
167 COG2217 ZntA Cation transport 97.0 0.0017 3.7E-08 65.3 7.5 80 142-236 535-614 (713)
168 COG1877 OtsB Trehalose-6-phosp 97.0 0.0019 4.1E-08 57.7 6.8 66 97-187 14-80 (266)
169 PRK10671 copA copper exporting 97.0 0.0019 4E-08 66.4 7.7 82 142-238 648-729 (834)
170 COG5663 Uncharacterized conser 97.0 0.0016 3.4E-08 54.0 5.6 131 103-249 8-163 (194)
171 TIGR01452 PGP_euk phosphoglyco 97.0 0.00026 5.6E-09 63.3 1.1 96 144-246 143-246 (279)
172 TIGR00685 T6PP trehalose-phosp 96.9 0.0016 3.5E-08 57.0 5.8 50 100-170 2-52 (244)
173 PLN02580 trehalose-phosphatase 96.9 0.0029 6.3E-08 59.3 7.5 62 97-184 115-176 (384)
174 TIGR01517 ATPase-IIB_Ca plasma 96.9 0.0035 7.5E-08 65.3 8.5 92 142-238 577-685 (941)
175 PLN02205 alpha,alpha-trehalose 96.8 0.0025 5.4E-08 65.6 6.8 59 99-184 594-653 (854)
176 TIGR01106 ATPase-IIC_X-K sodiu 96.8 0.005 1.1E-07 64.5 8.7 92 142-238 566-700 (997)
177 COG3769 Predicted hydrolase (H 96.8 0.0037 7.9E-08 54.2 6.3 58 101-189 7-64 (274)
178 PRK14010 potassium-transportin 96.8 0.0062 1.3E-07 61.1 8.9 82 142-238 439-520 (673)
179 TIGR01497 kdpB K+-transporting 96.8 0.0059 1.3E-07 61.2 8.7 82 142-238 444-525 (675)
180 COG4087 Soluble P-type ATPase 96.6 0.0072 1.6E-07 48.2 6.5 82 143-238 29-110 (152)
181 TIGR01647 ATPase-IIIA_H plasma 96.6 0.0042 9.2E-08 63.2 6.2 92 142-238 440-551 (755)
182 PRK01122 potassium-transportin 96.6 0.011 2.4E-07 59.4 9.0 82 142-238 443-524 (679)
183 TIGR01116 ATPase-IIA1_Ca sarco 96.5 0.012 2.6E-07 61.2 9.5 92 142-238 535-647 (917)
184 PF05116 S6PP: Sucrose-6F-phos 96.4 0.0043 9.3E-08 54.6 4.8 59 101-189 2-60 (247)
185 TIGR01523 ATPase-IID_K-Na pota 96.4 0.011 2.3E-07 62.4 8.0 92 142-238 644-762 (1053)
186 TIGR02245 HAD_IIID1 HAD-superf 96.4 0.01 2.2E-07 50.6 6.5 70 95-188 15-84 (195)
187 KOG1618 Predicted phosphatase 96.3 0.016 3.4E-07 52.8 7.6 64 98-188 32-99 (389)
188 TIGR01524 ATPase-IIIB_Mg magne 96.3 0.016 3.5E-07 59.9 8.6 90 142-238 513-619 (867)
189 PRK10517 magnesium-transportin 96.3 0.012 2.6E-07 61.0 7.6 90 142-238 548-654 (902)
190 PRK15122 magnesium-transportin 96.2 0.027 5.8E-07 58.5 9.6 90 142-238 548-654 (903)
191 KOG0202 Ca2+ transporting ATPa 96.1 0.029 6.3E-07 56.8 8.9 92 142-238 582-694 (972)
192 KOG0207 Cation transport ATPas 95.9 0.061 1.3E-06 54.9 10.1 100 99-236 701-800 (951)
193 PF02358 Trehalose_PPase: Treh 95.8 0.013 2.8E-07 50.9 4.8 48 105-177 1-49 (235)
194 PLN03063 alpha,alpha-trehalose 95.8 0.023 5.1E-07 58.2 7.1 67 99-187 505-572 (797)
195 PLN03064 alpha,alpha-trehalose 95.6 0.022 4.8E-07 59.0 6.1 73 99-187 589-662 (934)
196 PF06189 5-nucleotidase: 5'-nu 95.4 0.037 8E-07 49.1 5.9 127 99-247 119-258 (264)
197 COG0474 MgtA Cation transport 95.4 0.056 1.2E-06 56.3 8.1 92 142-238 545-655 (917)
198 TIGR01494 ATPase_P-type ATPase 95.2 0.085 1.9E-06 51.0 8.4 79 142-238 345-423 (499)
199 KOG2134 Polynucleotide kinase 95.0 0.064 1.4E-06 50.0 6.3 117 98-231 72-201 (422)
200 PF05761 5_nucleotid: 5' nucle 94.9 0.044 9.4E-07 52.5 5.2 101 145-246 184-323 (448)
201 PF13242 Hydrolase_like: HAD-h 94.8 0.041 9E-07 39.1 3.7 44 202-248 3-50 (75)
202 TIGR01657 P-ATPase-V P-type AT 94.6 0.1 2.2E-06 55.2 7.5 43 142-188 654-696 (1054)
203 COG4229 Predicted enolase-phos 94.5 0.14 3E-06 43.3 6.6 93 142-246 101-203 (229)
204 PLN02645 phosphoglycolate phos 94.0 0.024 5.1E-07 51.6 1.2 89 152-246 178-274 (311)
205 KOG2470 Similar to IMP-GMP spe 93.9 0.12 2.7E-06 47.7 5.6 27 144-170 240-266 (510)
206 COG3882 FkbH Predicted enzyme 93.5 1.1 2.3E-05 43.3 11.3 118 97-233 218-339 (574)
207 PF10307 DUF2410: Hypothetical 93.1 0.76 1.7E-05 39.3 8.8 91 145-237 55-149 (197)
208 PLN02177 glycerol-3-phosphate 93.0 0.88 1.9E-05 44.3 10.3 83 145-235 111-202 (497)
209 PRK10530 pyridoxal phosphate ( 91.7 0.73 1.6E-05 40.2 7.4 99 144-248 137-242 (272)
210 PLN02499 glycerol-3-phosphate 91.5 0.29 6.3E-06 47.4 4.9 33 152-189 101-134 (498)
211 PF09949 DUF2183: Uncharacteri 90.7 1.3 2.8E-05 33.7 6.8 73 162-236 1-80 (100)
212 KOG2961 Predicted hydrolase (H 90.7 4.2 9.1E-05 33.6 10.1 111 100-244 42-164 (190)
213 COG2216 KdpB High-affinity K+ 90.0 5.2 0.00011 39.2 11.6 78 142-235 445-523 (681)
214 TIGR01457 HAD-SF-IIA-hyp2 HAD- 89.7 0.21 4.5E-06 43.9 2.0 45 201-248 176-224 (249)
215 KOG3189 Phosphomannomutase [Li 88.7 0.85 1.9E-05 39.2 4.9 45 99-170 9-53 (252)
216 TIGR01487 SPP-like sucrose-pho 88.1 1.1 2.3E-05 38.0 5.4 76 163-249 110-191 (215)
217 TIGR01652 ATPase-Plipid phosph 86.9 2.6 5.6E-05 44.8 8.3 29 142-170 629-657 (1057)
218 TIGR02463 MPGP_rel mannosyl-3- 86.4 2.9 6.2E-05 35.4 7.0 37 211-247 183-221 (221)
219 PRK00192 mannosyl-3-phosphogly 85.9 2.5 5.5E-05 37.3 6.7 85 155-248 143-234 (273)
220 TIGR01460 HAD-SF-IIA Haloacid 85.9 0.51 1.1E-05 41.0 2.1 33 214-246 196-233 (236)
221 PF00702 Hydrolase: haloacid d 84.7 0.58 1.3E-05 38.9 1.9 18 102-119 2-19 (215)
222 TIGR01456 CECR5 HAD-superfamil 84.0 1.2 2.7E-05 40.6 3.8 25 222-246 264-290 (321)
223 KOG0204 Calcium transporting A 82.5 8.9 0.00019 39.7 9.3 92 142-238 645-755 (1034)
224 PLN03190 aminophospholipid tra 81.9 9.1 0.0002 41.3 9.8 29 142-170 724-752 (1178)
225 COG5610 Predicted hydrolase (H 81.8 6.6 0.00014 37.9 7.7 91 144-238 99-192 (635)
226 PRK10444 UMP phosphatase; Prov 81.4 1.2 2.5E-05 39.3 2.5 44 201-247 172-219 (248)
227 PF10137 TIR-like: Predicted n 79.2 7.7 0.00017 30.7 6.3 64 162-232 1-64 (125)
228 COG4502 5'(3')-deoxyribonucleo 79.1 7.5 0.00016 31.7 6.2 55 143-198 67-123 (180)
229 COG0647 NagD Predicted sugar p 78.8 2.7 5.8E-05 37.7 4.0 42 202-246 189-234 (269)
230 TIGR01485 SPP_plant-cyano sucr 76.6 11 0.00023 32.7 7.1 89 159-249 118-212 (249)
231 cd06591 GH31_xylosidase_XylS X 69.7 16 0.00035 33.2 6.8 25 144-168 63-87 (319)
232 PF13701 DDE_Tnp_1_4: Transpos 68.5 42 0.00091 32.2 9.6 19 99-117 137-155 (448)
233 COG0678 AHP1 Peroxiredoxin [Po 66.7 53 0.0011 27.1 8.3 69 99-198 36-105 (165)
234 PF04312 DUF460: Protein of un 66.6 13 0.00028 30.0 4.7 53 103-184 45-97 (138)
235 TIGR02468 sucrsPsyn_pln sucros 66.1 19 0.00041 38.4 7.1 46 148-198 788-839 (1050)
236 cd06595 GH31_xylosidase_XylS-l 66.0 19 0.0004 32.4 6.4 25 144-168 71-95 (292)
237 PF06415 iPGM_N: BPG-independe 65.6 24 0.00053 30.7 6.7 91 138-228 5-103 (223)
238 KOG4549 Magnesium-dependent ph 65.6 21 0.00046 28.5 5.7 79 100-188 4-85 (144)
239 KOG0203 Na+/K+ ATPase, alpha s 64.3 50 0.0011 34.4 9.4 57 99-170 560-616 (1019)
240 PRK01158 phosphoglycolate phos 64.2 21 0.00044 30.2 6.0 39 210-248 160-200 (230)
241 cd06416 GH25_Lys1-like Lys-1 i 64.1 18 0.00039 30.3 5.5 67 81-170 67-133 (196)
242 KOG1605 TFIIF-interacting CTD 63.3 4.8 0.0001 36.0 1.9 85 97-187 85-173 (262)
243 cd06598 GH31_transferase_CtsZ 62.8 33 0.00072 31.2 7.4 44 143-187 66-109 (317)
244 PF05822 UMPH-1: Pyrimidine 5' 62.5 14 0.00031 32.6 4.7 56 129-188 75-130 (246)
245 PF06437 ISN1: IMP-specific 5' 62.2 37 0.00081 32.0 7.6 66 78-170 127-192 (408)
246 COG2044 Predicted peroxiredoxi 61.9 30 0.00066 27.2 6.0 53 99-170 33-85 (120)
247 KOG0541 Alkyl hydroperoxide re 61.1 65 0.0014 26.7 7.9 61 99-188 42-103 (171)
248 PRK13762 tRNA-modifying enzyme 60.8 61 0.0013 29.7 8.8 41 142-187 140-180 (322)
249 cd08198 DHQS-like2 Dehydroquin 57.9 55 0.0012 30.7 8.0 89 160-249 30-134 (369)
250 KOG3040 Predicted sugar phosph 57.4 9.6 0.00021 33.1 2.7 43 201-246 179-225 (262)
251 TIGR02471 sucr_syn_bact_C sucr 57.0 59 0.0013 27.7 7.7 89 159-249 111-203 (236)
252 PF00578 AhpC-TSA: AhpC/TSA fa 56.6 22 0.00048 26.6 4.4 40 145-188 44-83 (124)
253 TIGR02886 spore_II_AA anti-sig 56.6 48 0.001 24.4 6.2 41 145-191 56-96 (106)
254 PRK00994 F420-dependent methyl 56.4 1.1E+02 0.0024 27.1 9.1 70 154-232 24-98 (277)
255 TIGR01482 SPP-subfamily Sucros 55.1 12 0.00027 31.4 3.0 39 210-248 152-192 (225)
256 PF07511 DUF1525: Protein of u 54.8 35 0.00075 26.6 5.2 50 58-107 41-90 (114)
257 cd07043 STAS_anti-anti-sigma_f 54.3 47 0.001 23.6 5.7 57 101-190 38-94 (99)
258 cd06539 CIDE_N_A CIDE_N domain 53.7 11 0.00025 27.3 2.2 22 100-121 39-60 (78)
259 COG0731 Fe-S oxidoreductases [ 53.0 25 0.00053 32.0 4.7 48 142-198 90-138 (296)
260 smart00266 CAD Domains present 52.5 9.8 0.00021 27.3 1.7 21 100-120 37-57 (74)
261 PRK07475 hypothetical protein; 51.7 1.6E+02 0.0036 25.6 10.9 120 29-188 23-146 (245)
262 PF09198 T4-Gluco-transf: Bact 51.7 4.8 0.0001 24.3 -0.0 13 50-62 9-21 (38)
263 TIGR00377 ant_ant_sig anti-ant 51.3 93 0.002 22.7 7.7 58 100-190 42-99 (108)
264 TIGR03757 conj_TIGR03757 integ 51.3 45 0.00096 26.0 5.3 50 58-107 42-91 (113)
265 cd06537 CIDE_N_B CIDE_N domain 51.2 12 0.00027 27.3 2.0 22 100-121 38-59 (81)
266 PF01740 STAS: STAS domain; I 50.2 28 0.00061 26.1 4.1 57 101-190 48-104 (117)
267 cd06414 GH25_LytC-like The Lyt 49.9 33 0.00071 28.6 4.8 69 79-170 68-136 (191)
268 PF02254 TrkA_N: TrkA-N domain 49.9 68 0.0015 23.8 6.2 22 149-170 10-31 (116)
269 cd06592 GH31_glucosidase_KIAA1 49.8 74 0.0016 28.7 7.4 24 145-168 68-91 (303)
270 cd05014 SIS_Kpsf KpsF-like pro 49.7 25 0.00054 26.7 3.8 27 144-170 58-84 (128)
271 cd01615 CIDE_N CIDE_N domain, 49.3 14 0.0003 26.9 2.0 23 99-121 38-60 (78)
272 cd07041 STAS_RsbR_RsbS_like Su 49.2 62 0.0014 23.9 5.8 57 100-189 40-96 (109)
273 COG0381 WecB UDP-N-acetylgluco 48.9 32 0.0007 32.4 4.9 92 151-246 21-131 (383)
274 cd05008 SIS_GlmS_GlmD_1 SIS (S 48.7 26 0.00057 26.6 3.7 26 145-170 58-83 (126)
275 cd06536 CIDE_N_ICAD CIDE_N dom 48.5 15 0.00032 26.9 2.1 22 100-121 41-62 (80)
276 PRK06203 aroB 3-dehydroquinate 48.5 1.3E+02 0.0028 28.3 9.0 88 160-248 42-145 (389)
277 PF14336 DUF4392: Domain of un 48.1 57 0.0012 29.5 6.3 45 142-189 58-102 (291)
278 TIGR00236 wecB UDP-N-acetylglu 48.1 42 0.00091 30.5 5.6 86 149-238 16-104 (365)
279 cd03018 PRX_AhpE_like Peroxire 47.6 50 0.0011 25.6 5.3 40 145-188 47-86 (149)
280 cd06538 CIDE_N_FSP27 CIDE_N do 47.3 13 0.00028 27.0 1.6 21 101-121 39-59 (79)
281 COG2344 AT-rich DNA-binding pr 46.3 41 0.00088 28.8 4.7 45 143-189 129-173 (211)
282 cd06415 GH25_Cpl1-like Cpl-1 l 45.5 45 0.00098 27.9 5.0 66 79-170 65-131 (196)
283 PF01380 SIS: SIS domain SIS d 45.4 36 0.00078 25.7 4.1 26 145-170 65-90 (131)
284 TIGR01486 HAD-SF-IIB-MPGP mann 45.1 90 0.002 26.9 7.0 29 221-249 194-222 (256)
285 cd06523 GH25_PlyB-like PlyB is 45.0 62 0.0013 26.7 5.7 60 79-170 65-125 (177)
286 cd08197 DOIS 2-deoxy-scyllo-in 44.7 1.5E+02 0.0032 27.6 8.7 90 155-248 17-118 (355)
287 cd06525 GH25_Lyc-like Lyc mura 44.6 42 0.0009 27.8 4.6 63 81-170 64-127 (184)
288 PRK12342 hypothetical protein; 44.5 1.9E+02 0.0041 25.7 8.9 85 150-238 41-126 (254)
289 PRK14021 bifunctional shikimat 44.4 1.2E+02 0.0026 29.9 8.4 98 148-248 196-303 (542)
290 cd05013 SIS_RpiR RpiR-like pro 44.3 32 0.0007 26.0 3.7 24 147-170 74-97 (139)
291 cd03017 PRX_BCP Peroxiredoxin 44.3 61 0.0013 24.8 5.3 40 145-188 42-81 (140)
292 PRK00994 F420-dependent methyl 43.3 50 0.0011 29.3 4.9 50 142-198 69-118 (277)
293 TIGR02495 NrdG2 anaerobic ribo 42.5 1.9E+02 0.004 23.6 8.9 39 145-187 75-113 (191)
294 TIGR03127 RuMP_HxlB 6-phospho 42.2 35 0.00077 27.8 3.8 27 144-170 83-109 (179)
295 cd08182 HEPD Hydroxyethylphosp 41.8 1.7E+02 0.0038 26.9 8.7 79 153-237 15-95 (367)
296 COG1184 GCD2 Translation initi 41.8 58 0.0013 29.7 5.3 41 147-188 130-172 (301)
297 PRK05476 S-adenosyl-L-homocyst 41.6 73 0.0016 30.5 6.2 45 144-189 56-100 (425)
298 cd05710 SIS_1 A subgroup of th 41.4 41 0.00088 25.7 3.8 26 145-170 59-84 (120)
299 cd02072 Glm_B12_BD B12 binding 41.3 1.8E+02 0.0039 23.0 8.6 82 149-234 39-122 (128)
300 COG3603 Uncharacterized conser 41.3 55 0.0012 25.8 4.3 25 146-170 76-101 (128)
301 KOG3128 Uncharacterized conser 40.9 51 0.0011 29.5 4.6 57 128-188 122-179 (298)
302 cd06603 GH31_GANC_GANAB_alpha 40.7 81 0.0018 28.9 6.3 25 144-168 61-85 (339)
303 PRK04531 acetylglutamate kinas 40.7 1.4E+02 0.003 28.3 7.9 69 86-189 22-90 (398)
304 cd00401 AdoHcyase S-adenosyl-L 40.4 80 0.0017 30.1 6.3 44 145-189 45-88 (413)
305 TIGR00099 Cof-subfamily Cof su 39.9 29 0.00062 30.0 3.0 39 210-248 191-231 (256)
306 cd03012 TlpA_like_DipZ_like Tl 39.8 49 0.0011 25.2 4.1 44 145-188 41-86 (126)
307 cd05017 SIS_PGI_PMI_1 The memb 39.7 44 0.00096 25.4 3.8 26 145-170 55-80 (119)
308 cd06601 GH31_lyase_GLase GLase 39.0 1.1E+02 0.0023 28.2 6.8 25 144-168 61-85 (332)
309 cd08181 PPD-like 1,3-propanedi 38.9 2.4E+02 0.0052 25.9 9.2 77 154-236 19-100 (357)
310 PLN02331 phosphoribosylglycina 38.8 2.2E+02 0.0049 24.3 8.3 69 151-228 15-86 (207)
311 PF09334 tRNA-synt_1g: tRNA sy 38.5 39 0.00085 31.8 3.9 65 151-221 27-112 (391)
312 PRK12702 mannosyl-3-phosphogly 38.4 40 0.00087 30.8 3.7 28 223-250 228-255 (302)
313 COG2086 FixA Electron transfer 38.4 2E+02 0.0044 25.6 8.2 84 148-238 41-128 (260)
314 cd05006 SIS_GmhA Phosphoheptos 38.4 45 0.00097 27.3 3.8 28 143-170 111-138 (177)
315 cd01423 MGS_CPS_I_III Methylgl 38.3 1.6E+02 0.0034 22.2 6.7 69 146-229 12-80 (116)
316 cd08199 EEVS 2-epi-5-epi-valio 38.3 1.5E+02 0.0033 27.4 7.7 87 159-248 25-122 (354)
317 smart00851 MGS MGS-like domain 38.1 35 0.00075 24.7 2.8 31 149-188 2-32 (90)
318 PRK09437 bcp thioredoxin-depen 37.9 88 0.0019 24.6 5.4 41 146-191 50-90 (154)
319 cd06524 GH25_YegX-like YegX is 37.2 53 0.0011 27.4 4.1 64 82-170 69-133 (194)
320 cd02971 PRX_family Peroxiredox 36.9 92 0.002 23.7 5.3 39 146-188 42-81 (140)
321 COG1501 Alpha-glucosidases, fa 36.8 1E+02 0.0022 31.9 6.8 44 143-187 317-360 (772)
322 cd04795 SIS SIS domain. SIS (S 36.7 49 0.0011 23.0 3.4 22 146-167 60-81 (87)
323 cd06599 GH31_glycosidase_Aec37 36.4 1.8E+02 0.004 26.3 7.9 26 143-168 69-94 (317)
324 PF08282 Hydrolase_3: haloacid 36.4 35 0.00076 28.4 2.9 39 210-248 189-229 (254)
325 TIGR01691 enolase-ppase 2,3-di 36.2 21 0.00046 30.8 1.6 15 102-116 2-16 (220)
326 cd06600 GH31_MGAM-like This fa 36.1 87 0.0019 28.4 5.7 23 145-167 62-84 (317)
327 TIGR01210 conserved hypothetic 36.1 2.7E+02 0.0059 25.2 8.9 41 147-188 88-129 (313)
328 TIGR00441 gmhA phosphoheptose 36.1 53 0.0011 26.4 3.8 26 145-170 91-116 (154)
329 PRK10976 putative hydrolase; P 36.0 31 0.00067 29.9 2.6 39 210-248 193-233 (266)
330 PF13911 AhpC-TSA_2: AhpC/TSA 36.0 1.4E+02 0.0031 22.2 6.1 41 151-197 4-44 (115)
331 smart00540 LEM in nuclear memb 36.0 33 0.00072 22.0 2.1 32 150-185 9-40 (44)
332 cd05005 SIS_PHI Hexulose-6-pho 35.8 51 0.0011 26.9 3.8 28 143-170 85-112 (179)
333 cd08183 Fe-ADH2 Iron-containin 35.8 1.5E+02 0.0032 27.5 7.3 75 155-236 17-92 (374)
334 PF04007 DUF354: Protein of un 35.1 39 0.00085 31.2 3.2 36 148-188 15-50 (335)
335 TIGR01357 aroB 3-dehydroquinat 34.7 2.4E+02 0.0052 25.7 8.4 85 160-248 20-115 (344)
336 cd08185 Fe-ADH1 Iron-containin 34.6 3E+02 0.0065 25.5 9.1 78 152-235 17-99 (380)
337 PRK13937 phosphoheptose isomer 34.5 55 0.0012 27.3 3.8 27 144-170 117-143 (188)
338 cd06844 STAS Sulphate Transpor 34.3 1.8E+02 0.0039 21.1 7.3 57 100-189 38-94 (100)
339 TIGR02109 PQQ_syn_pqqE coenzym 34.3 87 0.0019 28.6 5.4 42 145-188 66-107 (358)
340 cd02071 MM_CoA_mut_B12_BD meth 34.3 85 0.0018 24.1 4.6 75 150-235 40-117 (122)
341 cd01994 Alpha_ANH_like_IV This 34.1 1.4E+02 0.0029 25.2 6.2 66 148-225 76-142 (194)
342 PF02142 MGS: MGS-like domain 34.0 36 0.00079 24.9 2.3 32 148-188 1-32 (95)
343 TIGR01501 MthylAspMutase methy 33.9 2.4E+02 0.0053 22.4 8.6 83 148-234 40-124 (134)
344 PF13580 SIS_2: SIS domain; PD 33.9 49 0.0011 26.0 3.2 24 145-168 115-138 (138)
345 PF08138 Sex_peptide: Sex pept 33.4 25 0.00055 23.5 1.2 12 31-42 33-44 (56)
346 PRK10658 putative alpha-glucos 33.1 1.5E+02 0.0032 30.2 7.1 43 144-187 322-364 (665)
347 PF03345 DDOST_48kD: Oligosacc 33.0 2.5E+02 0.0053 27.0 8.3 44 149-199 14-57 (423)
348 cd08189 Fe-ADH5 Iron-containin 32.9 3.3E+02 0.0071 25.2 9.1 79 152-236 17-100 (374)
349 smart00481 POLIIIAc DNA polyme 32.8 1.5E+02 0.0032 19.9 5.2 39 149-188 17-56 (67)
350 PF01713 Smr: Smr domain; Int 32.8 69 0.0015 22.7 3.6 43 145-188 11-58 (83)
351 COG0143 MetG Methionyl-tRNA sy 32.6 82 0.0018 31.3 5.1 68 148-221 30-118 (558)
352 TIGR03590 PseG pseudaminic aci 32.5 87 0.0019 27.7 5.0 38 147-188 18-55 (279)
353 COG1964 Predicted Fe-S oxidore 32.0 3.6E+02 0.0077 26.2 9.0 80 142-225 120-205 (475)
354 cd08176 LPO Lactadehyde:propan 32.0 3E+02 0.0066 25.4 8.7 79 151-235 18-101 (377)
355 COG4464 CapC Capsular polysacc 31.9 92 0.002 27.3 4.7 27 143-169 16-42 (254)
356 cd00599 GH25_muramidase Endo-N 31.9 62 0.0013 26.5 3.7 64 81-170 64-128 (186)
357 KOG0323 TFIIF-interacting CTD 31.8 1.8E+02 0.0038 29.5 7.3 134 62-198 102-253 (635)
358 cd06522 GH25_AtlA-like AtlA is 31.8 1.4E+02 0.0029 24.9 5.8 64 79-170 68-133 (192)
359 KOG2900 Biotin synthase [Coenz 31.6 1.3E+02 0.0028 27.1 5.6 92 141-236 148-247 (380)
360 PRK13859 type IV secretion sys 31.4 67 0.0015 21.4 2.9 15 5-19 1-15 (55)
361 PF13478 XdhC_C: XdhC Rossmann 31.2 2.3E+02 0.0051 22.4 6.8 75 148-230 9-90 (136)
362 cd06259 YdcF-like YdcF-like. Y 31.1 2.5E+02 0.0055 21.8 7.4 80 151-234 25-108 (150)
363 COG0279 GmhA Phosphoheptose is 31.0 70 0.0015 26.8 3.7 28 144-171 120-147 (176)
364 PF00070 Pyr_redox: Pyridine n 30.8 1.7E+02 0.0037 20.2 5.4 40 149-188 11-56 (80)
365 PF03033 Glyco_transf_28: Glyc 30.6 89 0.0019 23.8 4.2 34 148-188 14-47 (139)
366 PRK10624 L-1,2-propanediol oxi 30.5 3.8E+02 0.0083 24.9 9.1 80 151-235 20-103 (382)
367 PRK05434 phosphoglyceromutase; 30.4 3.5E+02 0.0076 26.6 9.0 127 104-231 53-187 (507)
368 PF05221 AdoHcyase: S-adenosyl 30.4 80 0.0017 28.3 4.2 43 146-189 53-95 (268)
369 TIGR00639 PurN phosphoribosylg 30.1 3.3E+02 0.0072 22.8 8.4 70 150-228 15-87 (190)
370 PF09345 DUF1987: Domain of un 29.8 98 0.0021 23.4 4.1 69 71-166 14-82 (99)
371 COG1817 Uncharacterized protei 29.8 40 0.00087 31.1 2.3 46 138-188 5-50 (346)
372 PF12694 MoCo_carrier: Putativ 29.7 81 0.0018 25.6 3.8 45 143-188 73-117 (145)
373 TIGR02638 lactal_redase lactal 29.5 3.9E+02 0.0084 24.8 9.0 78 152-235 20-102 (379)
374 cd06602 GH31_MGAM_SI_GAA This 29.5 1.5E+02 0.0033 27.2 6.1 24 145-168 62-87 (339)
375 cd06604 GH31_glucosidase_II_Ma 29.3 1.6E+02 0.0034 26.9 6.2 24 144-167 61-84 (339)
376 PRK00942 acetylglutamate kinas 29.2 3E+02 0.0064 24.4 7.8 26 85-115 12-37 (283)
377 PF09680 Tiny_TM_bacill: Prote 29.2 48 0.001 18.5 1.7 13 7-19 9-21 (24)
378 PRK13938 phosphoheptose isomer 29.2 77 0.0017 26.9 3.8 28 143-170 123-150 (196)
379 PRK10513 sugar phosphate phosp 29.1 55 0.0012 28.3 3.1 39 210-248 199-239 (270)
380 cd01421 IMPCH Inosine monophos 29.1 55 0.0012 27.8 2.9 34 146-188 10-43 (187)
381 cd04250 AAK_NAGK-C AAK_NAGK-C: 29.0 2E+02 0.0044 25.4 6.7 26 85-115 3-28 (279)
382 PLN02494 adenosylhomocysteinas 28.6 1.6E+02 0.0035 28.7 6.3 76 147-231 57-133 (477)
383 cd08187 BDH Butanol dehydrogen 28.3 4.2E+02 0.0091 24.5 9.0 77 154-235 22-102 (382)
384 PRK10886 DnaA initiator-associ 28.3 81 0.0018 26.7 3.8 26 145-170 121-146 (196)
385 PRK05301 pyrroloquinoline quin 28.2 1.3E+02 0.0028 27.8 5.5 42 145-188 75-116 (378)
386 PF05116 S6PP: Sucrose-6F-phos 28.1 1.3E+02 0.0028 26.1 5.2 134 100-248 60-208 (247)
387 cd08190 HOT Hydroxyacid-oxoaci 28.0 4.7E+02 0.01 24.6 9.4 77 152-234 14-95 (414)
388 TIGR01307 pgm_bpd_ind 2,3-bisp 28.0 3.9E+02 0.0084 26.3 8.8 123 104-227 49-179 (501)
389 TIGR02826 RNR_activ_nrdG3 anae 27.8 1.3E+02 0.0029 24.1 4.9 25 146-170 74-98 (147)
390 PRK13936 phosphoheptose isomer 27.8 83 0.0018 26.4 3.8 27 144-170 122-148 (197)
391 PF00465 Fe-ADH: Iron-containi 27.7 96 0.0021 28.5 4.5 72 153-231 15-89 (366)
392 PF02017 CIDE-N: CIDE-N domain 27.6 40 0.00086 24.5 1.5 21 100-120 39-59 (78)
393 cd06593 GH31_xylosidase_YicI Y 27.2 2.8E+02 0.006 24.8 7.4 25 144-168 63-87 (308)
394 CHL00202 argB acetylglutamate 27.2 3.4E+02 0.0073 24.2 7.8 29 82-115 9-37 (284)
395 cd06589 GH31 The enzymes of gl 27.2 2.1E+02 0.0045 25.1 6.4 43 144-189 63-109 (265)
396 cd06417 GH25_LysA-like LysA is 26.9 1.6E+02 0.0034 24.5 5.4 61 82-170 62-123 (195)
397 cd03113 CTGs CTP synthetase (C 26.8 4.3E+02 0.0092 23.6 8.1 35 80-115 113-147 (255)
398 cd02970 PRX_like2 Peroxiredoxi 26.8 1.7E+02 0.0036 22.4 5.2 39 146-188 43-81 (149)
399 PF01183 Glyco_hydro_25: Glyco 26.4 1E+02 0.0022 25.2 4.1 67 80-170 63-130 (181)
400 PRK05647 purN phosphoribosylgl 26.3 3E+02 0.0065 23.2 7.0 70 150-228 16-88 (200)
401 COG0561 Cof Predicted hydrolas 26.2 59 0.0013 28.1 2.7 37 210-246 192-230 (264)
402 PRK15126 thiamin pyrimidine py 26.1 53 0.0011 28.6 2.4 39 210-248 191-231 (272)
403 PRK02261 methylaspartate mutas 26.1 3.3E+02 0.0072 21.5 8.6 81 149-234 43-126 (137)
404 cd00532 MGS-like MGS-like doma 25.8 78 0.0017 23.9 3.0 66 146-229 11-77 (112)
405 cd08192 Fe-ADH7 Iron-containin 25.8 5.2E+02 0.011 23.7 9.2 82 151-237 14-99 (370)
406 PRK12314 gamma-glutamyl kinase 25.6 3.4E+02 0.0073 24.0 7.5 102 101-226 9-139 (266)
407 TIGR00685 T6PP trehalose-phosp 25.6 55 0.0012 28.3 2.4 35 204-238 163-200 (244)
408 COG1366 SpoIIAA Anti-anti-sigm 25.5 2.9E+02 0.0063 20.7 7.6 39 146-190 62-100 (117)
409 cd00860 ThrRS_anticodon ThrRS 25.4 2.3E+02 0.005 19.6 5.4 17 149-165 17-33 (91)
410 PRK09860 putative alcohol dehy 25.4 5.4E+02 0.012 23.9 9.2 79 151-234 21-103 (383)
411 PF00072 Response_reg: Respons 25.4 1.2E+02 0.0026 21.6 4.0 36 150-189 59-96 (112)
412 TIGR02655 circ_KaiC circadian 25.4 3.4E+02 0.0074 26.2 8.0 80 149-234 280-365 (484)
413 TIGR01484 HAD-SF-IIB HAD-super 25.2 52 0.0011 27.2 2.1 30 210-239 166-197 (204)
414 PRK15454 ethanol dehydrogenase 25.2 4.3E+02 0.0094 24.7 8.5 79 151-235 39-122 (395)
415 PRK00414 gmhA phosphoheptose i 25.2 98 0.0021 25.9 3.8 26 145-170 123-148 (192)
416 TIGR03278 methan_mark_10 putat 24.9 1.5E+02 0.0033 28.1 5.4 45 143-188 85-130 (404)
417 PF13956 Ibs_toxin: Toxin Ibs, 24.8 34 0.00075 17.8 0.6 15 5-19 2-16 (19)
418 TIGR00936 ahcY adenosylhomocys 24.6 1.5E+02 0.0033 28.2 5.3 44 145-189 41-84 (406)
419 cd02072 Glm_B12_BD B12 binding 24.4 1.9E+02 0.0041 22.9 5.0 46 143-188 61-110 (128)
420 PF02698 DUF218: DUF218 domain 24.4 2.3E+02 0.0049 22.2 5.7 76 153-232 30-109 (155)
421 PRK02947 hypothetical protein; 24.4 95 0.002 27.1 3.6 27 144-170 117-143 (246)
422 PF01055 Glyco_hydro_31: Glyco 24.4 2.4E+02 0.0052 26.5 6.7 26 143-168 79-104 (441)
423 cd01011 nicotinamidase Nicotin 23.9 3.2E+02 0.007 22.7 6.7 39 150-188 127-165 (196)
424 TIGR02990 ectoine_eutA ectoine 23.8 1.7E+02 0.0038 25.5 5.2 46 142-188 101-147 (239)
425 PF13651 EcoRI_methylase: Aden 23.8 3.1E+02 0.0067 25.4 6.9 72 99-170 91-169 (336)
426 smart00463 SMR Small MutS-rela 23.8 1.7E+02 0.0037 20.4 4.3 27 144-170 13-41 (80)
427 COG1578 Uncharacterized conser 23.7 5.5E+02 0.012 23.2 9.0 152 65-236 59-219 (285)
428 PF13905 Thioredoxin_8: Thiore 23.7 1.9E+02 0.004 20.4 4.6 41 145-188 19-60 (95)
429 PRK00075 cbiD cobalt-precorrin 23.7 1.5E+02 0.0033 27.7 5.0 40 76-115 315-354 (361)
430 KOG1014 17 beta-hydroxysteroid 23.6 2.7E+02 0.0058 25.6 6.4 38 150-188 63-100 (312)
431 PLN02995 Probable pectinestera 23.5 1.4E+02 0.003 29.6 4.9 19 1-19 4-22 (539)
432 cd08171 GlyDH-like2 Glycerol d 23.4 3.8E+02 0.0082 24.5 7.6 90 154-248 16-110 (345)
433 TIGR02244 HAD-IG-Ncltidse HAD 23.4 44 0.00096 31.0 1.4 16 99-114 10-25 (343)
434 PF01993 MTD: methylene-5,6,7, 23.3 1.7E+02 0.0037 26.0 4.9 51 141-198 67-117 (276)
435 COG4822 CbiK Cobalamin biosynt 23.2 5E+02 0.011 22.9 7.6 112 98-218 134-259 (265)
436 cd08551 Fe-ADH iron-containing 23.2 5.8E+02 0.013 23.3 9.3 82 151-237 13-98 (370)
437 COG2999 GrxB Glutaredoxin 2 [P 23.2 85 0.0018 26.7 2.9 42 141-187 54-95 (215)
438 PF03193 DUF258: Protein of un 23.1 1.5E+02 0.0032 24.4 4.4 56 150-218 2-57 (161)
439 cd02968 SCO SCO (an acronym fo 22.8 1.8E+02 0.0039 22.1 4.7 43 145-188 41-87 (142)
440 PF13439 Glyco_transf_4: Glyco 22.7 1.1E+02 0.0024 23.5 3.5 22 149-170 18-39 (177)
441 PF08444 Gly_acyl_tr_C: Aralky 22.6 1.6E+02 0.0034 21.9 3.9 36 149-188 41-76 (89)
442 PLN02512 acetylglutamate kinas 22.5 4.6E+02 0.01 23.7 7.9 28 83-115 34-61 (309)
443 PRK11337 DNA-binding transcrip 22.4 1.1E+02 0.0024 27.0 3.8 27 144-170 198-224 (292)
444 KOG0205 Plasma membrane H+-tra 22.4 2E+02 0.0044 29.5 5.7 90 143-238 491-601 (942)
445 PRK12360 4-hydroxy-3-methylbut 22.4 5.5E+02 0.012 23.1 8.2 72 150-232 44-127 (281)
446 PRK03669 mannosyl-3-phosphogly 22.3 61 0.0013 28.4 2.0 29 210-238 190-223 (271)
447 PF08534 Redoxin: Redoxin; In 22.2 1.8E+02 0.0039 22.4 4.6 39 146-188 48-86 (146)
448 PRK13183 psbN photosystem II r 22.1 1.2E+02 0.0027 19.7 2.8 30 2-34 4-33 (46)
449 COG0337 AroB 3-dehydroquinate 22.1 3.6E+02 0.0078 25.3 7.1 86 160-248 33-128 (360)
450 KOG1467 Translation initiation 22.0 3.6E+02 0.0079 26.5 7.2 27 59-87 321-348 (556)
451 COG1454 EutG Alcohol dehydroge 22.0 6.4E+02 0.014 23.8 8.8 78 151-234 19-101 (377)
452 COG0541 Ffh Signal recognition 21.9 2E+02 0.0044 27.7 5.5 34 149-185 117-150 (451)
453 cd08195 DHQS Dehydroquinate sy 21.7 6E+02 0.013 23.1 8.6 85 160-248 24-119 (345)
454 PF03808 Glyco_tran_WecB: Glyc 21.5 4.5E+02 0.0097 21.4 8.4 40 144-185 32-71 (172)
455 TIGR00815 sulP high affinity s 21.4 4.2E+02 0.0092 26.0 8.0 39 145-189 511-549 (563)
456 CHL00020 psbN photosystem II p 21.3 1.2E+02 0.0026 19.5 2.6 30 2-34 1-30 (43)
457 cd01424 MGS_CPS_II Methylglyox 21.2 1.1E+02 0.0023 22.9 3.0 33 147-188 13-45 (110)
458 PTZ00056 glutathione peroxidas 21.1 2E+02 0.0042 24.2 4.8 44 145-188 57-104 (199)
459 PRK11557 putative DNA-binding 21.0 1.1E+02 0.0024 26.8 3.4 28 143-170 185-212 (278)
460 PF15183 MRAP: Melanocortin-2 21.0 1.4E+02 0.0031 22.0 3.3 16 8-23 51-66 (90)
461 PRK13717 conjugal transfer pro 20.9 79 0.0017 25.1 2.2 60 99-168 43-103 (128)
462 PRK15482 transcriptional regul 20.9 1.3E+02 0.0027 26.6 3.8 28 143-170 192-219 (285)
463 cd01453 vWA_transcription_fact 20.9 4.5E+02 0.0097 21.6 7.0 21 150-170 126-146 (183)
464 TIGR00640 acid_CoA_mut_C methy 20.9 4.2E+02 0.0091 20.8 7.5 77 149-236 42-121 (132)
465 COG2747 FlgM Negative regulato 20.8 1E+02 0.0022 23.2 2.6 31 63-93 62-92 (93)
466 PF06543 Lac_bphage_repr: Lact 20.7 91 0.002 20.4 2.0 27 133-159 19-45 (49)
467 PF04055 Radical_SAM: Radical 20.5 3.8E+02 0.0083 20.2 6.7 40 147-188 60-102 (166)
468 PF00271 Helicase_C: Helicase 20.4 1.3E+02 0.0029 20.3 3.2 34 154-187 1-34 (78)
469 TIGR00676 fadh2 5,10-methylene 20.4 4.9E+02 0.011 22.9 7.5 21 150-170 18-38 (272)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=2.8e-73 Score=491.63 Aligned_cols=218 Identities=57% Similarity=1.030 Sum_probs=211.6
Q ss_pred CccccccceeecceecccccccccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 36 DGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 36 ~~~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
...+||+||||+||+||+++|+|||++|++||++||+||||++|+++|+++|..|++++.+++++++|||||||+|+|||
T Consensus 12 ~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN 91 (229)
T TIGR01675 12 IDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSN 91 (229)
T ss_pred CCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE
Q 025360 116 VYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM 195 (254)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil 195 (254)
.||+..+.||+++|+++.|++|+..++++++|++++++++|+++|++|+|+|||+ +.+|+.|.+||.++||++|++|+|
T Consensus 92 ~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~-e~~r~~T~~nL~~~G~~~~~~LiL 170 (229)
T TIGR01675 92 IPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRW-EELRNATLDNLINAGFTGWKHLIL 170 (229)
T ss_pred HHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHHHHHcCCCCcCeeee
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEEeCCCCCCCC
Q 025360 196 RTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254 (254)
Q Consensus 196 r~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fklPNp~y~~~ 254 (254)
|+.++.++++..||+++|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus 171 R~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~ 229 (229)
T TIGR01675 171 RGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229 (229)
T ss_pred cCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence 98777777788999999999999999999999999999999999999999999999997
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=6.7e-71 Score=483.92 Aligned_cols=241 Identities=35% Similarity=0.674 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCc---------cccccceeecceecccccccccccchHHHHHhhhcCCcch
Q 025360 7 EVLLFLLLAIFSKATGTKDYPNSRYSMPGDG---------ASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYD 77 (254)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~ 77 (254)
.+++||+++|+++++ +...++.+|+++.+ +.||+|||++||+||+++|+|||++|++||++||+||||+
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~ 79 (275)
T TIGR01680 2 CLVFFVAAILVASQC--HGAAFDMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYR 79 (275)
T ss_pred eEEeehHHHHhhccc--ccchhhhhcccccccccccccCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHH
Confidence 356777777745444 66677788887543 3689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHH-HHHHhCCCCCchHHHHHHHHH
Q 025360 78 RDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFR-AWALKGGCPAIPGVLVLFNKL 156 (254)
Q Consensus 78 ~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~pg~~ell~~L 156 (254)
+|+++|+++|..|++++.+ ++++|||||||||+|||.||+..+.||+++|+++.|+ +|+..+.+|++|++++|++++
T Consensus 80 ~D~~~v~~~a~~y~~~~~~--~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l 157 (275)
T TIGR01680 80 SDSKTVNQQAYFFARDLEV--HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKL 157 (275)
T ss_pred HHHHHHHHHHHHHHHhCcC--CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHH
Confidence 9999999999999988765 4689999999999999999999999999999999999 999999999999999999999
Q ss_pred HHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC-CCCCCcccHHHHHHHHHHcCCcEEEEEcCCccccc
Q 025360 157 IESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQ 235 (254)
Q Consensus 157 ~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ 235 (254)
+++|++|+|||||+ |.+|+.|++||+++||+.|++|+||+.++ .++++..||+..|++++++||+|+++|||||+|+.
T Consensus 158 ~~~G~kIf~VSgR~-e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 158 VSLGFKIIFLSGRL-KDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLK 236 (275)
T ss_pred HHCCCEEEEEeCCc-hhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhcc
Confidence 99999999999999 99999999999999999999999998764 45567899999999999999999999999999999
Q ss_pred ccccC-CcEEEeCCCCCC
Q 025360 236 GECTG-NRTFKLPNPMYF 252 (254)
Q Consensus 236 ga~~g-~r~fklPNp~y~ 252 (254)
|++.| .|+||||||||-
T Consensus 237 G~~~g~~RtFKLPNP~~~ 254 (275)
T TIGR01680 237 GEHRGAIRSFKLPNPCTT 254 (275)
T ss_pred CCCccCcceecCCCcccc
Confidence 99986 799999999774
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=7.2e-54 Score=373.15 Aligned_cols=211 Identities=43% Similarity=0.761 Sum_probs=184.5
Q ss_pred cccccceeecceecccccccccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchh
Q 025360 38 ASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVY 117 (254)
Q Consensus 38 ~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~ 117 (254)
..+|+||+++||+|| .+|.+ ++|+.++.+ ++++||.+|++.++.+|..|+++....++++++||||||||+|||.+
T Consensus 13 ~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTvLsn~~ 88 (229)
T PF03767_consen 13 ALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETVLSNSP 88 (229)
T ss_dssp -----TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTTEEHHH
T ss_pred Hhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCcccccCHH
Confidence 379999999999999 99965 999999999 99999999999999999999988876668999999999999999999
Q ss_pred hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec
Q 025360 118 YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT 197 (254)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~ 197 (254)
|+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|||||+ +.+|+.|++||+++|++.|++++|++
T Consensus 89 y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~-~~~r~~T~~nL~~~G~~~~~~l~lr~ 167 (229)
T PF03767_consen 89 YYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRP-ESQREATEKNLKKAGFPGWDHLILRP 167 (229)
T ss_dssp HHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEE-TTCHHHHHHHHHHHTTSTBSCGEEEE
T ss_pred HHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCC-chhHHHHHHHHHHcCCCccchhcccc
Confidence 99998888888999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCC-CCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccc----cccCCcEEEeCCCCCCC
Q 025360 198 AAD-KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG----ECTGNRTFKLPNPMYFV 253 (254)
Q Consensus 198 ~~~-~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~g----a~~g~r~fklPNp~y~~ 253 (254)
..+ ..+++..||+..|..|++.||+|+++||||++||.| +..|.|+|+|||||||+
T Consensus 168 ~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~ 228 (229)
T PF03767_consen 168 DKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS 228 (229)
T ss_dssp ESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred ccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence 875 555678999999999999999999999999999999 55689999999999984
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=3.5e-36 Score=266.50 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=157.7
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhh-hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCC
Q 025360 64 LRYVESYMIGGQYDRDVELVVEQILCYVNEVV-LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGG 142 (254)
Q Consensus 64 ~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~-~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 142 (254)
..-+..|++|++|++++.++++.|+.++++.. ...++++|||||||||+|+|++|+..+.+++.+|+++.|++|+....
T Consensus 37 ~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~ 116 (266)
T TIGR01533 37 TMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQ 116 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCC
Confidence 34577899999999999999999999986644 33577999999999999999999988888989999999999999999
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~G 220 (254)
++++||+.+++++|+++|++++|+|||+ +..++.|..+|+++|++.+ +.+++++.. ..|...|+.+. .+
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~-~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-------~~K~~rr~~I~-~~ 187 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRS-EKEKAATLKNLKRFGFPQADEEHLLLKKDK-------SSKESRRQKVQ-KD 187 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCC-cchHHHHHHHHHHcCcCCCCcceEEeCCCC-------CCcHHHHHHHH-hc
Confidence 9999999999999999999999999999 9999999999999999864 467777531 23666666665 58
Q ss_pred CcEEEEEcCCcccccccc-------------------cCCcEEEeCCCCCC
Q 025360 221 YRIWGNIGDQWSDLQGEC-------------------TGNRTFKLPNPMYF 252 (254)
Q Consensus 221 y~i~~~IGDq~sDi~ga~-------------------~g~r~fklPNp~y~ 252 (254)
|+|+++|||+++||.+.. +|.+.|.||||||.
T Consensus 188 y~Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG 238 (266)
T TIGR01533 188 YEIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG 238 (266)
T ss_pred CCEEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence 999999999999997632 69999999999996
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=221.55 Aligned_cols=179 Identities=23% Similarity=0.367 Sum_probs=151.9
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHHHHH-HhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCC
Q 025360 66 YVESYMIGGQYDRDVELVVEQILCYVN-EVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCP 144 (254)
Q Consensus 66 ~v~~y~~~~~Y~~d~~~v~~~a~~y~~-~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 144 (254)
.|..|..+++|++-.-+..+.|..-++ ..++..++++|||+|||+|+|||++|.......+.+|+|+.|++|+....+.
T Consensus 43 ~v~w~Q~s~E~~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk 122 (274)
T COG2503 43 SVNWYQQSAEYQALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSK 122 (274)
T ss_pred hHHHhhhhHHHHHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccc
Confidence 466788999998887777777776665 5667778888999999999999999998888888999999999999999999
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR 222 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~ 222 (254)
++||+.||+++..++|.+|+|+|+|.++.....|.++|.+.|++.- .++++..+. .-|+. |+++.+.+|.
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~-------k~Ke~-R~~~v~k~~~ 194 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDK-------KSKEV-RRQAVEKDYK 194 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCC-------CcHHH-HHHHHhhccc
Confidence 9999999999999999999999999955558999999999999963 356666321 22555 4455556999
Q ss_pred EEEEEcCCcccccccc------------------cCCcEEEeCCCCCC
Q 025360 223 IWGNIGDQWSDLQGEC------------------TGNRTFKLPNPMYF 252 (254)
Q Consensus 223 i~~~IGDq~sDi~ga~------------------~g~r~fklPNp~y~ 252 (254)
|++.|||+..||.... +|.+++++|||||.
T Consensus 195 iVm~vGDNl~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG 242 (274)
T COG2503 195 IVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYG 242 (274)
T ss_pred eeeEecCchhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccC
Confidence 9999999999996554 79999999999996
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.89 E-value=9.3e-23 Score=178.26 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=105.2
Q ss_pred CCceEEEecCCccccchhh--hhhhccC--CCCC--ChHHHHHHHHh--CCCCCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 025360 100 GMDAWILDVDDTCISNVYY--YKGKRYG--CDPY--DPAGFRAWALK--GGCPAIPGVLVLFNKLIESGLKVILVTGRDE 171 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~--~~~~~~g--~~~~--~~~~~~~~~~~--~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~ 171 (254)
++.+|+||||||+|+|+|+ +.++.|+ ...| +++-|+.|.+. ..+.+.||++++|++|+++|++|+|||||+
T Consensus 62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~- 140 (237)
T PRK11009 62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRT- 140 (237)
T ss_pred CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCC-
Confidence 3459999999999998874 4444453 3456 34445555543 356788889999999999999999999999
Q ss_pred cccHHHHHHHHHh-CCC--CCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEE---
Q 025360 172 ETFGQVTRDNLHN-QGF--VGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTF--- 244 (254)
Q Consensus 172 e~~r~~T~~~L~~-~G~--~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~f--- 244 (254)
+..++.|.++|.+ +|+ ..++.+++.++. ..|+ .| +..+++. .++++|||+++|+++|+ +|.+++
T Consensus 141 ~~k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~---~K---~~~l~~~--~i~I~IGDs~~Di~aA~~AGi~~I~v~ 211 (237)
T PRK11009 141 ATKTETVSKTLADDFHIPADNMNPVIFAGDK-PGQY---TK---TQWLKKK--NIRIFYGDSDNDITAAREAGARGIRIL 211 (237)
T ss_pred CcccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCC---CH---HHHHHhc--CCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence 8888889999886 999 456777877654 2332 22 3345554 45899999999999997 565554
Q ss_pred EeCCCCC
Q 025360 245 KLPNPMY 251 (254)
Q Consensus 245 klPNp~y 251 (254)
.-+|++|
T Consensus 212 ~G~~~~~ 218 (237)
T PRK11009 212 RAANSTY 218 (237)
T ss_pred cCCCCCC
Confidence 5589988
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.82 E-value=2.3e-19 Score=157.01 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=101.2
Q ss_pred CCCCceEEEecCCccccchhhhhhhccCCCCC---------ChHHHHHHHHhCCC--CCchHHHHHHHHHHHCCCeEEEE
Q 025360 98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPY---------DPAGFRAWALKGGC--PAIPGVLVLFNKLIESGLKVILV 166 (254)
Q Consensus 98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~--~~~pg~~ell~~L~~~G~~i~~v 166 (254)
+.++-+|+|||||||+||.+++ . +|...+ ++..|+.|...... .+.+++.++|++|+++|++++++
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV 136 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV 136 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence 3444599999999999999987 2 332222 34678999877654 55566999999999999999999
Q ss_pred eCCCccccHHHHHH-HHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcE
Q 025360 167 TGRDEETFGQVTRD-NLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRT 243 (254)
Q Consensus 167 TgR~~e~~r~~T~~-~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~ 243 (254)
|||. +..++.+.+ .|+.+|++.++.+++.++. ..+||. +. ..+++ +.++++|||+.+|+.+|+ +|.++
T Consensus 137 Tnr~-~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~---~~---~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 137 TGRT-PGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYT---KT---QWIQD--KNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred eCCC-CCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCC---HH---HHHHh--CCCeEEEeCCHHHHHHHHHCCCCE
Confidence 9997 543444444 4557999988888888765 333442 22 23444 446899999999999986 88988
Q ss_pred EEe
Q 025360 244 FKL 246 (254)
Q Consensus 244 fkl 246 (254)
+.+
T Consensus 208 I~V 210 (237)
T TIGR01672 208 IRI 210 (237)
T ss_pred EEE
Confidence 877
No 8
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.67 E-value=4.3e-16 Score=134.99 Aligned_cols=142 Identities=21% Similarity=0.277 Sum_probs=109.2
Q ss_pred CceEEEecCCccccchhhhhhhc------cCCC----------------------------C-CChHHHHHHHH------
Q 025360 101 MDAWILDVDDTCISNVYYYKGKR------YGCD----------------------------P-YDPAGFRAWAL------ 139 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~------~g~~----------------------------~-~~~~~~~~~~~------ 139 (254)
.+++|||+||||+|+.+.+.+.+ +|.. . ........+..
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 57999999999999988776532 2210 0 11111111111
Q ss_pred hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360 140 KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 140 ~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~ 218 (254)
....+++||+.++++.|+++|++++++|+.+ +..+...|..+|+..|++.++.+++ .++||++ ...+.+.+.
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~----~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~P---d~yL~Aa~~ 154 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSP----RRAAERVLARLGLLDYFDVIVTADDVARGKPAP---DIYLLAAER 154 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCCh----HHHHHHHHHHccChhhcchhccHHHHhcCCCCC---HHHHHHHHH
Confidence 2457999999999999999999999999999 8999999999999988888777766 6778765 333345677
Q ss_pred cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.|.. .|+.|+|+.++++++. +|+++|.+|++
T Consensus 155 Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 155 LGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred cCCChHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence 7665 4999999999999998 89999999983
No 9
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.66 E-value=1.1e-15 Score=132.63 Aligned_cols=102 Identities=19% Similarity=0.133 Sum_probs=81.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++++.|+++|++++++||.. +......|+.+|+..|++.++.+++ ..+||++ ...+..+++.|
T Consensus 91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p---~~~~~~~~~~~ 163 (224)
T PRK14988 91 RAVLREDTVPFLEALKASGKRRILLTNAH----PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQ---RLWQAVAEHTG 163 (224)
T ss_pred cCCcCCCHHHHHHHHHhCCCeEEEEeCcC----HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCH---HHHHHHHHHcC
Confidence 36789999999999999999999999988 6777778899999888777776655 4567644 33344566667
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcE-EEeCCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRT-FKLPNPM 250 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~-fklPNp~ 250 (254)
.. .|++|||+.+|+++|+ +|+++ +.++||-
T Consensus 164 ~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 164 LKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred CChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 65 4999999999999998 78874 6678764
No 10
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.65 E-value=1.9e-15 Score=130.57 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=81.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
..++||+.++|..|+++|++++++||++ +..+...|+++|+..|+..+.+.++ ...||++ ..+...+.+.|.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~----~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P---~~l~~~~~~~~~ 160 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKP----ERELDILLKALGLADYFDVIVGGDDVPPPKPDP---EPLLLLLEKLGL 160 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCc----HHHHHHHHHHhCCccccceEEcCCCCCCCCcCH---HHHHHHHHHhCC
Confidence 5799999999999999999999999999 8888999999999999998888444 5566654 444455666676
Q ss_pred c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360 222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
. .+++|||+..|+++|+ +|..++.+.
T Consensus 161 ~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~ 189 (220)
T COG0546 161 DPEEALMVGDSLNDILAAKAAGVPAVGVT 189 (220)
T ss_pred ChhheEEECCCHHHHHHHHHcCCCEEEEE
Confidence 6 6999999999999998 677766554
No 11
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.64 E-value=2.8e-15 Score=131.76 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=83.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++|+.|+++|++++++||+. +..+...|+++|+..|++.++.+++ ..+||.+ ......++..|
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~----~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p---~~~~~a~~~~~ 178 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP----RENAELMISLLGLSDFFQAVIIGSECEHAKPHP---DPYLKALEVLK 178 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHHcCChhhCcEEEecCcCCCCCCCh---HHHHHHHHHhC
Confidence 46889999999999999999999999999 8888999999999988888887776 4567654 33444566666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
.+ .+++|||+.+|+++|+ +|.+++.+..
T Consensus 179 ~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 179 VSKDHTFVFEDSVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CChhHEEEEcCCHHHHHHHHHCCCEEEEEeC
Confidence 54 4999999999999998 7999988853
No 12
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.64 E-value=3.8e-15 Score=127.51 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=101.2
Q ss_pred CceEEEecCCccccchhhhhhhc------cCCC-------------C-------CChHHHHHHH-------H---hCCCC
Q 025360 101 MDAWILDVDDTCISNVYYYKGKR------YGCD-------------P-------YDPAGFRAWA-------L---KGGCP 144 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~------~g~~-------------~-------~~~~~~~~~~-------~---~~~~~ 144 (254)
.++||||+||||+++.+.+.+.. ++.. + +.+..+.+.+ . ....+
T Consensus 3 ~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (214)
T PRK13288 3 INTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELVT 82 (214)
T ss_pred ccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 57999999999999876543311 2210 0 1222222221 1 12457
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc-
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR- 222 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~- 222 (254)
++||+.++++.|+++|++++++||+. +..+...|+.+|+..|++.++..++ ..+||.+ ...++.+...|..
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~----~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p---~~~~~~~~~~~~~~ 155 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKM----RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDP---EPVLKALELLGAKP 155 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCChhceeEEEecCcCCCCCCCc---HHHHHHHHHcCCCH
Confidence 89999999999999999999999999 7788889999999998888887665 4456544 3344455666654
Q ss_pred -EEEEEcCCcccccccc-cCCcEEEeC
Q 025360 223 -IWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 223 -i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
.+++|||+.+|+++|+ +|.+++.+.
T Consensus 156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~ 182 (214)
T PRK13288 156 EEALMVGDNHHDILAGKNAGTKTAGVA 182 (214)
T ss_pred HHEEEECCCHHHHHHHHHCCCeEEEEc
Confidence 4899999999999997 788887763
No 13
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.63 E-value=5.3e-15 Score=131.27 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++|+.|+++|++++++||++ +..+...|+.+|+..|++.++.+++ ..+||++ ......+++.|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~----~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~P---e~~~~a~~~l~ 179 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRP----RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDP---EMFMYAAERLG 179 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcC----HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCH---HHHHHHHHHhC
Confidence 46789999999999999999999999999 7888889999999888888887766 4567754 34445667777
Q ss_pred CcE--EEEEcCCcccccccc-cCCcEEEeCC
Q 025360 221 YRI--WGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y~i--~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
... +++|||+.+|+++|+ +|.+++.+.+
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 654 999999999999998 7999988864
No 14
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.63 E-value=4.6e-15 Score=128.77 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=79.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
..+++||+.++++.|+++|++++++||++ +..+...|+++|+..+++.+..+++ ..+||++ ...+..+...|
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p---~~~~~~~~~l~ 165 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKP----EYLARLILPQLGWEQRCAVLIGGDTLAERKPHP---LPLLVAAERIG 165 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCchhcccEEEecCcCCCCCCCH---HHHHHHHHHhC
Confidence 46889999999999999999999999999 6777788999999888887777665 4567654 33444566666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
.. .+++|||+.+|+.+|+ +|.+++.+
T Consensus 166 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 166 VAPTDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 54 4999999999999997 79998866
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.62 E-value=6.2e-15 Score=136.76 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=84.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++|+.|+++|++++++||++ +..+...|+++|+..|++.++..++ ..+||++ ......++..|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~----~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~P---eifl~A~~~lg 286 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP----RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDP---EMFIYAAQLLN 286 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCH---HHHHHHHHHcC
Confidence 46789999999999999999999999999 8899999999999989888888776 4567654 33334566667
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
.. .|++|||+.+|+++|+ +|++++.+.+
T Consensus 287 l~Peecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 287 FIPERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred CCcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 54 4999999999999998 7999999875
No 16
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.62 E-value=3.1e-15 Score=131.36 Aligned_cols=100 Identities=23% Similarity=0.250 Sum_probs=82.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...++||+.++|+.|+++|++++++||++ +..+...|+++|+..|+ +.++.+++ ..+||++ ......++..
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~----~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p---~~~~~a~~~l 169 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYT----REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAP---WMALKNAIEL 169 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCc----HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCH---HHHHHHHHHc
Confidence 46899999999999999999999999999 78888899999998874 77777665 4567654 3444566677
Q ss_pred CCc---EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 220 GYR---IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 220 Gy~---i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
|.. .+++|||+.+|+++|+ +|.+++.++.
T Consensus 170 ~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 170 GVYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CCCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence 752 4999999999999997 8999999864
No 17
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.62 E-value=4.8e-15 Score=127.12 Aligned_cols=100 Identities=24% Similarity=0.289 Sum_probs=81.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC--CCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV--GYERLIMRTAA-DKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~--~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~ 218 (254)
..+++||+.++++.|+++|++++++||+. +......|+++|+. .+++.++...+ ...||++ ......+++
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~----~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p---~~~~~a~~~ 157 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFD----RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAP---DLILRAMEL 157 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCH---HHHHHHHHH
Confidence 45799999999999999999999999999 77788899999997 77777777765 4566654 334445666
Q ss_pred cCCc---EEEEEcCCcccccccc-cCCcE-EEeCC
Q 025360 219 EGYR---IWGNIGDQWSDLQGEC-TGNRT-FKLPN 248 (254)
Q Consensus 219 ~Gy~---i~~~IGDq~sDi~ga~-~g~r~-fklPN 248 (254)
.|.. .+++|||+.+|+++|+ +|.++ +.+..
T Consensus 158 ~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 158 TGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred cCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 6653 5999999999999997 89998 77754
No 18
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.61 E-value=1.5e-14 Score=124.60 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=85.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++++.|+++|++++++||.. +..+...|+.+|+..|++.++.+++ ..+||++ ...+..++..|
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~ 162 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP----LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHP---EVYLNCAAKLG 162 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc----HHHHHHHHHhCcchhcccEEEEcccCCCCCCCH---HHHHHHHHHcC
Confidence 46899999999999999999999999999 7888889999999988887777655 3456644 34455677777
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~ 250 (254)
.. .|++|||+.+|+.+|+ +|.+++.+|++-
T Consensus 163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~ 195 (222)
T PRK10826 163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPE 195 (222)
T ss_pred CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCc
Confidence 64 4999999999999997 899999998763
No 19
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.61 E-value=8.2e-15 Score=121.91 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
..++||+.++|+.|+++|++++++||+. . ....|+.+|+..+++.++.+.+ ...||.+ ...+..++..|.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~-~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p---~~~~~~~~~~~~ 156 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK-N-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDP---EIFLAAAEGLGV 156 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc-c-----HHHHHHhcCcHhhCcEEEehhhcCCCCCCh---HHHHHHHHHcCC
Confidence 4789999999999999999999999976 2 1356889999888887777655 4456543 444456666666
Q ss_pred c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360 222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
. .+++|||+.+|+++|+ +|.+++.++
T Consensus 157 ~~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred CHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 4 4999999999999998 799988764
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.61 E-value=9.6e-15 Score=130.48 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=101.6
Q ss_pred CCCceEEEecCCccccchhhhhhhc------cCCC----------------------CCChHHHH-------HHHHh--C
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKR------YGCD----------------------PYDPAGFR-------AWALK--G 141 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~------~g~~----------------------~~~~~~~~-------~~~~~--~ 141 (254)
+..+++|||+||||+|+.+.+.... +|.. .++...+. +.... .
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 4578999999999999986554311 2211 01111111 11111 2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
..+++||+.++|+.|+++|++++++||.. +..+...|+..|+..+++.+...+....| +......+++.|.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~----~~~~~~~L~~~gl~~~F~~vi~~~~~~~k-----~~~~~~~l~~~~~ 210 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS----RQNIEAFLQRQGLRSLFSVVQAGTPILSK-----RRALSQLVAREGW 210 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCChhheEEEEecCCCCCC-----HHHHHHHHHHhCc
Confidence 45789999999999999999999999999 88888999999998888877665443333 2444555555554
Q ss_pred c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
. .+++|||+.+|+++|+ +|.+++.++.
T Consensus 211 ~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~ 240 (273)
T PRK13225 211 QPAAVMYVGDETRDVEAARQVGLIAVAVTW 240 (273)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 4 5999999999999998 7999988754
No 21
>PRK11587 putative phosphatase; Provisional
Probab=99.61 E-value=1e-14 Score=125.40 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=77.7
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...+++||+.++|+.|+++|++++++||++ +..+...|...|+. ++..++..++ ..+||++ ......++..
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~----~~~~~~~l~~~~l~-~~~~i~~~~~~~~~KP~p---~~~~~~~~~~ 151 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGS----VPVASARHKAAGLP-APEVFVTAERVKRGKPEP---DAYLLGAQLL 151 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCC----chHHHHHHHhcCCC-CccEEEEHHHhcCCCCCc---HHHHHHHHHc
Confidence 356889999999999999999999999998 55566778888986 4455666544 4556654 3334456666
Q ss_pred CC--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 220 GY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 220 Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
|. ..+++|||+.+|+++|+ +|.+++.+.++
T Consensus 152 g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~ 184 (218)
T PRK11587 152 GLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAP 184 (218)
T ss_pred CCCcccEEEEecchhhhHHHHHCCCEEEEECCC
Confidence 65 45999999999999998 78998888653
No 22
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.60 E-value=1.4e-14 Score=124.13 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=81.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
..+++||+.++|+.|+++|++++++||.. +......|+++|+..|++.++.+++ ...||++ ...+..+++.|
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~~ 164 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGL----PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHP---KIFYAALKRLG 164 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHhCChHHhccEEEEeccCCCCCCCH---HHHHHHHHHcC
Confidence 35799999999999999999999999998 6667788999999888776766655 4567654 33444566667
Q ss_pred Cc--EEEEEcCCc-ccccccc-cCCcEEEeCCCC
Q 025360 221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~ 250 (254)
.. .+++|||++ +|+.+|+ +|.+++.++.+.
T Consensus 165 ~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 165 VKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred CChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence 64 599999998 8999998 899999887653
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.60 E-value=1.3e-14 Score=123.40 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=80.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++++.|+++|++++++||.. +..+...|+++|+..+++.++..++ ...||.+ ......+++.|
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p---~~~~~~~~~~~ 155 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKP----TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHP---DPLLLAAERLG 155 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCCh---HHHHHHHHHcC
Confidence 35789999999999999999999999999 7888899999999888887777655 3456643 34445666666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
.. .+++|||+.+|+.+++ +|..++.+.
T Consensus 156 ~~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 156 VAPQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred CChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 54 4999999999999997 788888774
No 24
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.60 E-value=2.4e-14 Score=120.97 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=80.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
..+++||+.++++.|+++|++++++||.+ .......|+++|+..+++.++.+++ ...||.+ ...+..+...|
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~----~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~ 162 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGS----PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAP---QVYQLALEALG 162 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHCCChhhhheeEehhhcCCCCCCH---HHHHHHHHHhC
Confidence 46789999999999999999999999999 6777788999999877777777665 4567654 33333455556
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.. .+++|||+.+|+.+|. +|.+++.+..+
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 54 4899999999999997 89999888643
No 25
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.59 E-value=1.5e-14 Score=122.99 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=79.3
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...+++||+.+++++|+++|++++++||+. +..+...|+..|+..+++.++..++ ..+||.+ ...+..+++.
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~ 144 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKS----GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAP---DIVREALRLL 144 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHHHcCChhheeeEEecCcCCCCCCCh---HHHHHHHHHc
Confidence 356889999999999999999999999999 7778888999999887777766654 3456543 4444556666
Q ss_pred CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360 220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
|.. .+++|||+.+|+.+|+ +|.+++.+
T Consensus 145 ~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 145 DVPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred CCChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 754 4999999999999998 78887765
No 26
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.58 E-value=2.7e-14 Score=128.36 Aligned_cols=169 Identities=16% Similarity=0.155 Sum_probs=114.9
Q ss_pred cccchHHHHHhhhcCCcchHHHHHHHHHHHHHH---HH----hhhcCCCCceEEEecCCccccchhhhhhhccCCCCCCh
Q 025360 59 VPTQCLRYVESYMIGGQYDRDVELVVEQILCYV---NE----VVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDP 131 (254)
Q Consensus 59 ~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~---~~----~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~ 131 (254)
-+.+|.+.+... +......+.+..+...+. .. +.....++++++||+|||+.++.. ..+|
T Consensus 112 ~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~--------~~~~-- 178 (300)
T PHA02530 112 PVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGG--------RSPY-- 178 (300)
T ss_pred CHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCC--------CCcc--
Confidence 345666655443 323234455554444442 21 122234568999999999998752 1233
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--------EEEecCCCCCC
Q 025360 132 AGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--------LIMRTAADKGK 203 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--------lilr~~~~~~k 203 (254)
+|.......++|++.++++.|+++|++++++|||+ +..+..+.++|...|+. ++. ++||.. ..+|
T Consensus 179 ----~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~-~~~~~~~l~~l~~~~~~-f~~i~~~~~~~~~~~~~-~~~k 251 (300)
T PHA02530 179 ----DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD-GVCEEDTVEWLRQTDIW-FDDLIGRPPDMHFQREQ-GDKR 251 (300)
T ss_pred ----chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC-hhhHHHHHHHHHHcCCc-hhhhhCCcchhhhcccC-CCCC
Confidence 35556678999999999999999999999999999 88888999999887732 222 233333 2457
Q ss_pred CCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEeC
Q 025360 204 NAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 204 p~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
|++..+....+++....++++++|||+.+|+.+++ +|..++.+.
T Consensus 252 p~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 252 PDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA 296 (300)
T ss_pred CcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence 77655554444443334578999999999999998 789888874
No 27
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.56 E-value=3.6e-14 Score=125.79 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC-CcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY-ERLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~-~~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...++||+.++|+.|+++|++++++||.+ +..+...|+.+|+..+ ++.++..++ ..+||++ ......+.+.
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~----~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p---~~~~~a~~~l 171 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYT----REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYP---WMALKNAIEL 171 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCc----HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCCh---HHHHHHHHHc
Confidence 46789999999999999999999999999 7777888888887665 366766655 4556654 3344566667
Q ss_pred CC---cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 220 GY---RIWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 220 Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
|. ..+++|||+.+|+++|+ +|.+++.+..
T Consensus 172 ~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~ 204 (267)
T PRK13478 172 GVYDVAACVKVDDTVPGIEEGLNAGMWTVGVIL 204 (267)
T ss_pred CCCCCcceEEEcCcHHHHHHHHHCCCEEEEEcc
Confidence 75 35999999999999998 7999888753
No 28
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=9e-14 Score=124.01 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=78.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++||+.++++.|+++|++++++||.+ +......|.++|+..+++.+..++. ...||.+ ..+...++..|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~----~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p---~~~~~~~~~~g~ 172 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKP----ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDP---AALLFVMKMAGV 172 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCc----HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCc---HHHHHHHHHhCC
Confidence 5689999999999999999999999999 5667788889999888777777665 3456543 233344555665
Q ss_pred c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
. .+++|||+.+|+++++ +|.+++.+++
T Consensus 173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 173 PPSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 4 4999999999999998 8888888765
No 29
>PLN02940 riboflavin kinase
Probab=99.55 E-value=7.1e-14 Score=130.43 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=82.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH-hCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH-NQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~-~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...++||+.++++.|+++|++++++||++ +..+...|+ ..|+..+++.++.+++ ..+||++ ...+..++..
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~----~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p---~~~~~a~~~l 163 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSP----RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSP---DIFLEAAKRL 163 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCc----HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCH---HHHHHHHHHc
Confidence 46789999999999999999999999999 677777887 6899888888888776 4566644 3444456666
Q ss_pred CCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
|.. .|++|||+.+|+++|+ +|.+++.++..
T Consensus 164 gv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g 196 (382)
T PLN02940 164 NVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSI 196 (382)
T ss_pred CCChhHEEEEeCCHHHHHHHHHcCCEEEEECCC
Confidence 654 4999999999999997 89999999753
No 30
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.54 E-value=7.4e-14 Score=116.13 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=74.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++++.|+++|++++++||+. .....|+..|+..|++.++..++ ..+||.+ ......+++.|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~~------~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~---~~~~~~~~~~~ 156 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSSK------NADRILAKLGLTDYFDAIVDADEVKEGKPHP---ETFLLAAELLG 156 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCch------hHHHHHHHcChHHHCCEeeehhhCCCCCCCh---HHHHHHHHHcC
Confidence 46899999999999999999999999974 34668889999888877777654 3456543 33344566666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEE
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFK 245 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fk 245 (254)
.. .+++|||+..|+++|+ +|.+++.
T Consensus 157 ~~~~~~v~IgD~~~di~aA~~~G~~~i~ 184 (185)
T TIGR02009 157 VSPNECVVFEDALAGVQAARAAGMFAVA 184 (185)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence 64 4899999999999997 7887764
No 31
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.54 E-value=2.3e-14 Score=136.57 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=81.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
..+++||+.++|++|+++|++++++||+. +..+...|+.+|+..|++.++..++..++|.+ ......+++.+.
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~----~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP---~~~~~al~~l~~ 400 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL----TEYLRAIVSYYDLDQWVTETFSIEQINSLNKS---DLVKSILNKYDI 400 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHHHCCcHhhcceeEecCCCCCCCCc---HHHHHHHHhcCc
Confidence 46889999999999999999999999999 88888999999998888888887664322222 223344555566
Q ss_pred cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 222 RIWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
+.|++|||+.+|+++|+ +|.+++.++.
T Consensus 401 ~~~v~VGDs~~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 401 KEAAVVGDRLSDINAAKDNGLIAIGCNF 428 (459)
T ss_pred ceEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999998 8999988854
No 32
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.53 E-value=1.6e-13 Score=114.72 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=77.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
..+++|+ .+++..|+++ ++++++||.+ +......|+++|+..|++.++..++ ..+||++. .....+.+.|
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~----~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~---~~~~~~~~~~ 156 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSE----SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPD---TFLRCAQLMG 156 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCc----hHHHHHHHHhCCcHhHceEEEehhhccCCCCChH---HHHHHHHHcC
Confidence 3467786 6999999876 8999999999 7788889999999988888888766 45676552 2333556666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
.. .+++|||+.+|+++|+ +|.+++.+..
T Consensus 157 ~~~~~~l~igDs~~di~aA~~aG~~~i~~~~ 187 (188)
T PRK10725 157 VQPTQCVVFEDADFGIQAARAAGMDAVDVRL 187 (188)
T ss_pred CCHHHeEEEeccHhhHHHHHHCCCEEEeecC
Confidence 54 4999999999999998 7999888753
No 33
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.53 E-value=1e-13 Score=117.40 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc-
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR- 222 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~- 222 (254)
.+.+++.++|+.|+++|++++++||++ +..+...|+..|+..|++.++..++...||.+.. ....+++.|.+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~---~~~~~~~~~~~~ 178 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRP----RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEP---LILAAKALGVEA 178 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCC----HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHH---HHHHHHHhCcCc
Confidence 345566999999999999999999999 8888899999999888888887766434765532 33345555654
Q ss_pred -EEEEEcCCcccccccc
Q 025360 223 -IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 223 -i~~~IGDq~sDi~ga~ 238 (254)
.+++|||+.+|+.+|+
T Consensus 179 ~~~i~vGD~~~Di~aA~ 195 (197)
T TIGR01548 179 CHAAMVGDTVDDIITGR 195 (197)
T ss_pred ccEEEEeCCHHHHHHHH
Confidence 5999999999999986
No 34
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.52 E-value=3.5e-13 Score=115.55 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=79.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
...++||+.++++.|+++|++++++||.. +......|+.+|+..+++.++..+. ...||.+ ...+..++..|
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~ 163 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKP----TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDP---APLLLACEKLG 163 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCCccCccEEEcCCCCCCCCcCh---HHHHHHHHHcC
Confidence 46799999999999999999999999999 5666788999999888887777655 3455533 34444556656
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
.. .+++|||+.+|+.+++ +|..++.++.
T Consensus 164 ~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~ 194 (226)
T PRK13222 164 LDPEEMLFVGDSRNDIQAARAAGCPSVGVTY 194 (226)
T ss_pred CChhheEEECCCHHHHHHHHHCCCcEEEECc
Confidence 54 5999999999999998 7888888753
No 35
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.52 E-value=8.1e-14 Score=113.14 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=89.2
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-------
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------- 174 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------- 174 (254)
++++||+||||.++...+ | ...|.+ ..++||+.++++.|+++|++++++||.+ ...
T Consensus 1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~-~~~~~~~~~~ 63 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQS-GIGRGYFSAE 63 (147)
T ss_pred CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCC-cccCCcCCHH
Confidence 479999999999986311 1 112433 3589999999999999999999999987 310
Q ss_pred -----HHHHHHHHHhCCCCCCCcEEEec----CC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCC
Q 025360 175 -----GQVTRDNLHNQGFVGYERLIMRT----AA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGN 241 (254)
Q Consensus 175 -----r~~T~~~L~~~G~~~~~~lilr~----~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~ 241 (254)
...+...|+++|+. +...+... +. ..+||.+ ......++..|.. .+++|||+..|+++|+ +|.
T Consensus 64 ~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi 139 (147)
T TIGR01656 64 AFRAPNGRVLELLRQLGVA-VDGVLFCPHHPADNCSCRKPKP---GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGL 139 (147)
T ss_pred HHHHHHHHHHHHHHhCCCc-eeEEEECCCCCCCCCCCCCCCH---HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCC
Confidence 24566788889987 22333332 11 2345543 3444455666655 4999999999999997 899
Q ss_pred cEEEeCC
Q 025360 242 RTFKLPN 248 (254)
Q Consensus 242 r~fklPN 248 (254)
+++.+|.
T Consensus 140 ~~v~i~~ 146 (147)
T TIGR01656 140 AAVLLVD 146 (147)
T ss_pred CEEEecC
Confidence 9999885
No 36
>PRK09449 dUMP phosphatase; Provisional
Probab=99.49 E-value=2.1e-13 Score=117.24 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++||+.++++.|+ +|++++++||.. +..+...|+++|+..+++.++.+++ ..+||++ ......+++.|.
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p---~~~~~~~~~~~~ 165 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF----TELQQVRLERTGLRDYFDLLVISEQVGVAKPDV---AIFDYALEQMGN 165 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc----HHHHHHHHHhCChHHHcCEEEEECccCCCCCCH---HHHHHHHHHcCC
Confidence 579999999999999 689999999998 7777888999999887777776655 4567654 334445666664
Q ss_pred ---cEEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360 222 ---RIWGNIGDQW-SDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 222 ---~i~~~IGDq~-sDi~ga~-~g~r~fklP 247 (254)
..+++|||+. +|+++|+ +|.+++.+.
T Consensus 166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 166 PDRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 3599999998 6999997 799988875
No 37
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=5.3e-13 Score=119.94 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC---CCCCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG---FVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G---~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~ 218 (254)
.+++||+.++|+.|+++|++++++||.+ +......|...+ +..++..+ .+++ ..+||.+ ......+..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~----~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p---~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSN----EKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDP---DIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHhccccccCceEEE-eccccCCCCCCH---HHHHHHHHH
Confidence 4799999999999999999999999998 566666666653 22233444 4443 3456654 333345566
Q ss_pred cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.|.. .+++|||+.+|+++|+ +|.+++.+++.
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 6665 4999999999999998 79999998764
No 38
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.49 E-value=1.3e-13 Score=109.42 Aligned_cols=120 Identities=22% Similarity=0.181 Sum_probs=84.8
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-----HH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-----GQ 176 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-----r~ 176 (254)
++++||+||||.++.++.. .|. ...++|++.++++.|+++|++++++||+. ... ++
T Consensus 1 k~~~~D~dgtL~~~~~~~~------------~~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~-~~~~~~~~~~ 61 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVD------------DED------ERILYPEVPDALAELKEAGYKVVIVTNQS-GIGRGKFSSG 61 (132)
T ss_pred CEEEEeCCCceecCCCCCC------------CHH------HheeCCCHHHHHHHHHHCCCEEEEEECCc-cccccHHHHH
Confidence 5899999999997532211 121 25689999999999999999999999987 544 45
Q ss_pred HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHc-CC--cEEEEEcC-Ccccccccc-cCCcEEEe
Q 025360 177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE-GY--RIWGNIGD-QWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~-Gy--~i~~~IGD-q~sDi~ga~-~g~r~fkl 246 (254)
.+.+.|+.+|+. ++..+... ...||.+ ......+.+. +. ..+++||| ..+|+.+|+ +|.+++.+
T Consensus 62 ~~~~~l~~~~l~-~~~~~~~~--~~~KP~~---~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 62 RVARRLEELGVP-IDVLYACP--HCRKPKP---GMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred HHHHHHHHCCCC-EEEEEECC--CCCCCCh---HHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 567788999997 33344444 3445543 2222344444 34 45999999 689999997 78887765
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.48 E-value=3.5e-13 Score=112.71 Aligned_cols=94 Identities=19% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC-C----CCCCcccHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD-K----GKNAVTYKSEIRKQL 216 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~----~kp~~~yK~~~r~~l 216 (254)
..+++||+.++|+.|+ ++++++||.+ +..+...|+++|+..|++.++..++. . .||.+ ...+..+
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~----~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p---~~~~~~~ 151 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGD----RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSP---QAYEKAL 151 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCC----HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCH---HHHHHHH
Confidence 3568999999999997 5799999999 77888999999998888777776553 3 36654 3333445
Q ss_pred HHcCCc--EEEEEcCCcccccccc-cCCcEEE
Q 025360 217 LEEGYR--IWGNIGDQWSDLQGEC-TGNRTFK 245 (254)
Q Consensus 217 ~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fk 245 (254)
++.|.+ .+++|||+..|+++|+ +|.+++.
T Consensus 152 ~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~ 183 (184)
T TIGR01993 152 REAGVDPERAIFFDDSARNIAAAKALGMKTVL 183 (184)
T ss_pred HHhCCCccceEEEeCCHHHHHHHHHcCCEEee
Confidence 555654 4899999999999998 7888765
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.48 E-value=2.6e-13 Score=115.13 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=76.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
.+++||+.++++.|+++|++++++||.+ +.....++.. .|+..+++.++.+.+ ..+||++.. ....+++.|
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~----~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~---~~~~~~~~~ 155 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTN----RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARI---YQHVLQAEG 155 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCc----hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHH---HHHHHHHcC
Confidence 4689999999999999999999999998 4444455554 367666666666555 566776522 223456666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~ 250 (254)
.+ .+++|||+..|+.+|+ +|.+++.++++.
T Consensus 156 ~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~ 188 (199)
T PRK09456 156 FSAADAVFFDDNADNIEAANALGITSILVTDKQ 188 (199)
T ss_pred CChhHeEEeCCCHHHHHHHHHcCCEEEEecCCc
Confidence 54 4999999999999998 899999998863
No 41
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.48 E-value=3.9e-13 Score=113.90 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=72.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR 222 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~ 222 (254)
.++||+.++++.|+++|++++++||.+ +. ....|+..|+..+++.++.+.+ ..+||.+ ...+..+++.|..
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~----~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~~~ 176 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFD----SR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDP---KIFQEALERAGIS 176 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCc----hh-HHHHHHHCCcHHhcceEEeecccCCCCCCH---HHHHHHHHHcCCC
Confidence 689999999999999999999999987 33 3567889999877777766655 4456654 3344456666764
Q ss_pred --EEEEEcCCc-ccccccc-cCCcEE
Q 025360 223 --IWGNIGDQW-SDLQGEC-TGNRTF 244 (254)
Q Consensus 223 --i~~~IGDq~-sDi~ga~-~g~r~f 244 (254)
.+++|||+. +|+++|+ +|.+++
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~i 202 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRAL 202 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCeee
Confidence 499999998 8999997 787764
No 42
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.47 E-value=1.4e-13 Score=106.89 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=85.9
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L 182 (254)
+++||+||||....+.... .....+.|++.++++.|+++|++++++||+. +.....++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~----~~~~~~~~ 58 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS----RREVLELL 58 (139)
T ss_pred CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch----HHHHHHHH
Confidence 4799999999987643321 2346899999999999999999999999999 88899999
Q ss_pred HhCCCCCCCcEEEecCC-CCC----------------CCCcccHHHHHHHHHHcC--CcEEEEEcCCccccccccc-CCc
Q 025360 183 HNQGFVGYERLIMRTAA-DKG----------------KNAVTYKSEIRKQLLEEG--YRIWGNIGDQWSDLQGECT-GNR 242 (254)
Q Consensus 183 ~~~G~~~~~~lilr~~~-~~~----------------kp~~~yK~~~r~~l~~~G--y~i~~~IGDq~sDi~ga~~-g~r 242 (254)
+..|+..+++.++...+ ... ||.... ....+...+ ...+++|||+.+|+..+.. |.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~ 135 (139)
T cd01427 59 EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDK---LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGL 135 (139)
T ss_pred HHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHH---HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCc
Confidence 99998655554554433 211 332222 222333333 4569999999999999985 877
Q ss_pred EEE
Q 025360 243 TFK 245 (254)
Q Consensus 243 ~fk 245 (254)
++.
T Consensus 136 ~i~ 138 (139)
T cd01427 136 GVA 138 (139)
T ss_pred eee
Confidence 764
No 43
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.45 E-value=1.3e-12 Score=108.02 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=71.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++||+.++++.|+++|++++++||.+ +.. ...+.+.|+..+++.++.+++ ..+||.+ ...+..+++.|.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~----~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~~~ 155 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSP----RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDP---DIYLLALKKLGL 155 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCc----hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCH---HHHHHHHHHcCC
Confidence 6789999999999999999999999999 444 444555899877777666544 4566654 222334555554
Q ss_pred --cEEEEEcCCcccccccc-cCCcEEE
Q 025360 222 --RIWGNIGDQWSDLQGEC-TGNRTFK 245 (254)
Q Consensus 222 --~i~~~IGDq~sDi~ga~-~g~r~fk 245 (254)
..+++|||+..|+.+|+ +|.+++.
T Consensus 156 ~~~~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 156 KPEECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred CcceEEEEcCCHHHHHHHHHcCCEEEe
Confidence 46999999999999998 7887764
No 44
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.45 E-value=9.8e-13 Score=112.95 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...++||+.++++.| +++++++||.+ +..+...|+.+|+..|+ +.++.+.+ ...||++ +.....+++.
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~----~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p---~~~~~a~~~~ 155 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGP----VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDP---ALMFHAAEAM 155 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCc----HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCCh---HHHHHHHHHc
Confidence 467899999999988 49999999998 77888899999998887 46766644 4567654 3333456666
Q ss_pred CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360 220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
|.. .|++|||+++|+++|. +|..++.+
T Consensus 156 ~~~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 156 NVNVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 664 4999999999999998 78888876
No 45
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.45 E-value=2.9e-13 Score=109.69 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=85.9
Q ss_pred eEEEecCCccccchhhhhhhc------cCC----------CCCC-----hHHHHHHHH-hCCCCCchHHHHHHHHHHHCC
Q 025360 103 AWILDVDDTCISNVYYYKGKR------YGC----------DPYD-----PAGFRAWAL-KGGCPAIPGVLVLFNKLIESG 160 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~------~g~----------~~~~-----~~~~~~~~~-~~~~~~~pg~~ell~~L~~~G 160 (254)
+|+||+||||+|+.+.+.... +|. .+.. ...|.+... ......+||+.+++..|+++|
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g 80 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG 80 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence 489999999999975443211 121 1110 112222221 134567899999999999999
Q ss_pred CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc-EEEEEcCCcccccccc
Q 025360 161 LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR-IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 161 ~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~-i~~~IGDq~sDi~ga~ 238 (254)
++++++||+. +......++.. +..++..+...++..+||.+ ......+++.|.. .+++|||+..|+++|+
T Consensus 81 ~~~~i~T~~~----~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~---~~~~~~~~~~~~~~~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 81 IKLGIISNGS----LRAQKLLLRKH-LGDYFDLILGSDEFGAKPEP---EIFLAALESLGLPPEVLHVGDNLNDIEGAR 151 (154)
T ss_pred CeEEEEeCCc----hHHHHHHHHHH-HHhcCcEEEecCCCCCCcCH---HHHHHHHHHcCCCCCEEEEeCCHHHHHHHH
Confidence 9999999999 66666677766 55566666665543367644 4444455655654 5899999999999987
No 46
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.44 E-value=3.4e-13 Score=109.54 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~ 219 (254)
...++.||+.++++.|+++|++++++||.+ +......|+.+|+..+++.++...+ ...||.+ ...+..+++.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~----~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~~ 146 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS----RERIERVLERLGLDDYFDEIISSDDVGSRKPDP---DAYRRALEKL 146 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSE----HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSH---HHHHHHHHHH
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCC----cccccccccccccccccccccccchhhhhhhHH---HHHHHHHHHc
Confidence 567899999999999999999999999999 7888889999999877666666554 4566644 3334445555
Q ss_pred CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360 220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
|.. .+++|||+..|+.+|. +|.+++-+
T Consensus 147 ~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 147 GIPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp TSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred CCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 543 5999999999999998 88888753
No 47
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.43 E-value=9.1e-13 Score=111.32 Aligned_cols=138 Identities=14% Similarity=0.060 Sum_probs=86.7
Q ss_pred CceEEEecCCccccchh----hhhhhccC---------CC---------CCChHH----HHHHHHh---CCCCCchHHHH
Q 025360 101 MDAWILDVDDTCISNVY----YYKGKRYG---------CD---------PYDPAG----FRAWALK---GGCPAIPGVLV 151 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~----~~~~~~~g---------~~---------~~~~~~----~~~~~~~---~~~~~~pg~~e 151 (254)
+++||||+||||+|... ...++++. .. ..+... +..+... ....++||+.+
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 81 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD 81 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence 47899999999999765 22222111 10 012122 2222211 34679999999
Q ss_pred HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC----CCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG----YERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~----~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
+++.|++++ .++++|+.+ . ......++.+|+.. +++.++.....++|| ......+++.|.+.+++|
T Consensus 82 ~L~~L~~~~-~~~i~Tn~~-~---~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp-----~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 82 VINKLKEDY-DFVAVTALG-D---SIDALLNRQFNLNALFPGAFSEVLMCGHDESKE-----KLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred HHHHHHhcC-CEEEEeCCc-c---chhHHHHhhCCHHHhCCCcccEEEEeccCcccH-----HHHHHHHHHhCCCcEEEe
Confidence 999999985 678889877 3 22233344455532 344555554444443 344556666675679999
Q ss_pred cCCcccccccc-c--CCcEEEeCC
Q 025360 228 GDQWSDLQGEC-T--GNRTFKLPN 248 (254)
Q Consensus 228 GDq~sDi~ga~-~--g~r~fklPN 248 (254)
||+.+|+++|+ + |..++.+..
T Consensus 152 gDs~~di~aA~~a~~Gi~~i~~~~ 175 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLPVIHMLR 175 (197)
T ss_pred CCCHHHHHHHHHHHcCCcEEEecc
Confidence 99999999997 6 999888743
No 48
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.42 E-value=2.5e-12 Score=105.40 Aligned_cols=110 Identities=26% Similarity=0.390 Sum_probs=91.2
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
...|.+++|+|+|+||+.-. ...+-|.+.+.+..++++|.+++++||.. +.
T Consensus 24 ~~~Gikgvi~DlDNTLv~wd-------------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~----e~ 74 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPWD-------------------------NPDATPELRAWLAELKEAGIKVVVVSNNK----ES 74 (175)
T ss_pred HHcCCcEEEEeccCceeccc-------------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCC----HH
Confidence 34679999999999999531 35578999999999999999999999998 66
Q ss_pred HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEe
Q 025360 177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
-...++.++|++ | +.+. .| ++...+|++|.+.+++ .|++||||. +|+.|++ +|++|+.+
T Consensus 75 RV~~~~~~l~v~-f---i~~A----~K---P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 75 RVARAAEKLGVP-F---IYRA----KK---PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred HHHhhhhhcCCc-e---eecc----cC---ccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 777899999998 2 3222 23 3668899999998886 499999999 7999998 89999987
No 49
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.41 E-value=1.8e-12 Score=110.60 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=74.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G 220 (254)
..+++||+.++++.|+++|++++++||.. ..... ....+...|+..+++.++.+.+ ..+||++ ......+.+.|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~-~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p---~~~~~~~~~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNF-PTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDP---RIYQLMLERLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCC-Cccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCH---HHHHHHHHHcC
Confidence 35689999999999999999999999987 32211 2334555677666666665544 4467754 22333556666
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.. .+++|||+..|+.+|+ +|.+++.+.++
T Consensus 167 ~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 167 VAPEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 54 4899999999999997 79999988764
No 50
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.39 E-value=1.7e-12 Score=103.01 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=63.8
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH----
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ---- 176 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~---- 176 (254)
+++|+|||||||+.+.. .+|. ...+.+++.+.++.|+++|+.|+++|||+ ...+.
T Consensus 1 ~K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~-~~~~~~n~~ 59 (126)
T TIGR01689 1 MKRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRN-MRTYEGNVG 59 (126)
T ss_pred CCEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCC-chhhhcccc
Confidence 36899999999986520 0121 25689999999999999999999999999 77666
Q ss_pred --------HHHHHHHhCCCCCCCcEEEecC
Q 025360 177 --------VTRDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 177 --------~T~~~L~~~G~~~~~~lilr~~ 198 (254)
.|.+||.++|++ |++++|+.+
T Consensus 60 ~i~~~~~~~t~~wL~k~~ip-Yd~l~~~kp 88 (126)
T TIGR01689 60 KINIHTLPIIILWLNQHNVP-YDEIYVGKP 88 (126)
T ss_pred ccchhhHHHHHHHHHHcCCC-CceEEeCCC
Confidence 999999999999 999999984
No 51
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.39 E-value=2.7e-12 Score=109.75 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc-C
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE-G 220 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~-G 220 (254)
..++||+.++++.|+++ ++++++||.. +......|+++|+..+++.++.+.+ ...||.+ ......++.. |
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~----~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~---~~~~~~~~~~~~ 167 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGV----RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDK---EIFNYALERMPK 167 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCc----hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCH---HHHHHHHHHhcC
Confidence 57899999999999999 9999999998 6677788999999888877777655 4456654 2233345555 6
Q ss_pred Cc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360 221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklP 247 (254)
.+ .+++|||+. +|+++|+ +|..++.+.
T Consensus 168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~~ 198 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWMN 198 (224)
T ss_pred CCchheEEECCCcHHHHHHHHHCCCcEEEEC
Confidence 54 499999998 7999997 788887763
No 52
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.39 E-value=2.6e-12 Score=107.21 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=84.2
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-----c--
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET-----F-- 174 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~-----~-- 174 (254)
++++||.||||+...+|.. .+ ....++||+.++|+.|+++|++++++||.+ .. .
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~------------~~------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~-~~~~~~~~~~ 62 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVH------------EI------DNFEFIDGVIDALRELKKMGYALVLVTNQS-GIARGYFTEA 62 (176)
T ss_pred CEEEEeCCCCEeCCCCCCC------------CH------HHeEECCCHHHHHHHHHHCCCEEEEEeCCc-cccCCcCCHH
Confidence 6899999999996432211 11 135689999999999999999999999998 41 1
Q ss_pred -----HHHHHHHHHhCCCCCCCcEEEec-----------CCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccc
Q 025360 175 -----GQVTRDNLHNQGFVGYERLIMRT-----------AADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQG 236 (254)
Q Consensus 175 -----r~~T~~~L~~~G~~~~~~lilr~-----------~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~g 236 (254)
+......|.+.|+. ++.++... ....+||.+ ......+++.|.+ .+++|||+++|+++
T Consensus 63 ~~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p---~~~~~a~~~~~~~~~~~v~VGDs~~Di~a 138 (176)
T TIGR00213 63 QFEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKP---GMLLQARKELHIDMAQSYMVGDKLEDMQA 138 (176)
T ss_pred HHHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCH---HHHHHHHHHcCcChhhEEEEcCCHHHHHH
Confidence 13334567777887 55555432 112356643 3444556666654 49999999999999
Q ss_pred cc-cCCcE-EEe
Q 025360 237 EC-TGNRT-FKL 246 (254)
Q Consensus 237 a~-~g~r~-fkl 246 (254)
|+ +|.++ +.+
T Consensus 139 A~~aG~~~~i~v 150 (176)
T TIGR00213 139 GVAAKVKTNVLV 150 (176)
T ss_pred HHHCCCcEEEEE
Confidence 97 78887 444
No 53
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.39 E-value=2.1e-12 Score=106.79 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=88.6
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc--c-------
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE--E------- 172 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~--e------- 172 (254)
++++||.||||..+.+. .|... . ....+++||+.++|++|+++|++++++||.++ .
T Consensus 2 ~~~~~d~dg~l~~~~~~---------~~~~~-~-----~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~ 66 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS---------DFQVD-A-----LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD 66 (161)
T ss_pred CEEEEeCCCCccccCCC---------ccccC-C-----HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence 68999999999986420 11000 0 01357899999999999999999999999741 0
Q ss_pred --ccHHHHHHHHHhCCCCCCCcEEEe----cCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360 173 --TFGQVTRDNLHNQGFVGYERLIMR----TAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR 242 (254)
Q Consensus 173 --~~r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r 242 (254)
..+..+.+.|.++|+. ++..+.+ .++ ..+||.+ ......++..|.. .+++|||+.+|+.+|+ +|..
T Consensus 67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKI---KLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCH---HHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 1244566778999997 6566665 222 3456643 2233344555544 4999999999999997 8888
Q ss_pred EEEeCC
Q 025360 243 TFKLPN 248 (254)
Q Consensus 243 ~fklPN 248 (254)
++.+..
T Consensus 143 ~i~~~~ 148 (161)
T TIGR01261 143 GIQYDE 148 (161)
T ss_pred EEEECh
Confidence 887754
No 54
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.38 E-value=1.9e-12 Score=107.56 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=82.5
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------ 174 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------ 174 (254)
.+.++||+||||+.+.... .+ ..+++.| ..++||+.++|+.|+++|++++++||++ ...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~-~~~~~~~~~ 77 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK---VF---PTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQS-GIGRGKLSA 77 (166)
T ss_pred CcEEEEeCCCceEecCCCC---cc---cCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCc-ccccCcccH
Confidence 5789999999999753100 00 1122222 2368999999999999999999999988 421
Q ss_pred ---HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--C--cEEEEEcCCc--------ccccccc-
Q 025360 175 ---GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--Y--RIWGNIGDQW--------SDLQGEC- 238 (254)
Q Consensus 175 ---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y--~i~~~IGDq~--------sDi~ga~- 238 (254)
...+...|+.+|++ ++.++.......+||.+ ..+...++..| . ..+++|||+. +|+++|+
T Consensus 78 ~~~~~~i~~~l~~~gl~-~~~ii~~~~~~~~KP~p---~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~ 153 (166)
T TIGR01664 78 ESFKNKIEAFLEKLKVP-IQVLAATHAGLYRKPMT---GMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN 153 (166)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEEecCCCCCCCCcc---HHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH
Confidence 12467789999997 33333333323456644 23334455555 3 4699999996 6999997
Q ss_pred cCCcE
Q 025360 239 TGNRT 243 (254)
Q Consensus 239 ~g~r~ 243 (254)
+|.++
T Consensus 154 aGi~~ 158 (166)
T TIGR01664 154 LGLEF 158 (166)
T ss_pred CCCCc
Confidence 66554
No 55
>PLN02954 phosphoserine phosphatase
Probab=99.35 E-value=1.6e-11 Score=105.60 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCceEEEecCCccccchhhhhh-hccC--------------C-CCC-------------ChHHHHHHHHhCCCCCchHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKG-KRYG--------------C-DPY-------------DPAGFRAWALKGGCPAIPGVL 150 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~-~~~g--------------~-~~~-------------~~~~~~~~~~~~~~~~~pg~~ 150 (254)
.+++||||+||||+++.....- ..+| + .++ ..+.+.+++......++||+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~ 90 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP 90 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence 3789999999999987532111 1122 1 111 112234444443456889999
Q ss_pred HHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CCc--EEEecC------C-CCCCCCcccH-HHHHHHHHH
Q 025360 151 VLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YER--LIMRTA------A-DKGKNAVTYK-SEIRKQLLE 218 (254)
Q Consensus 151 ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~~--lilr~~------~-~~~kp~~~yK-~~~r~~l~~ 218 (254)
++++.|+++|++++++||.. +..+...|+.+|++. ++. +....+ . .........| ..+++.+..
T Consensus 91 e~l~~l~~~g~~~~IvS~~~----~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~ 166 (224)
T PLN02954 91 ELVKKLRARGTDVYLVSGGF----RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKK 166 (224)
T ss_pred HHHHHHHHCCCEEEEECCCc----HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHH
Confidence 99999999999999999999 788888999999972 221 111111 0 0000001123 334444455
Q ss_pred cCCcEEEEEcCCcccccccccCCcE
Q 025360 219 EGYRIWGNIGDQWSDLQGECTGNRT 243 (254)
Q Consensus 219 ~Gy~i~~~IGDq~sDi~ga~~g~r~ 243 (254)
.|...+++|||+.+|+.++.+|...
T Consensus 167 ~~~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 167 HGYKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred cCCCceEEEeCCHHHHHhhhcCCCC
Confidence 6777899999999999998864333
No 56
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.35 E-value=6.8e-12 Score=105.01 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=87.0
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------ 174 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------ 174 (254)
.++++||.||||..+...+.+ .+. ...++||+.+++++|+++|++++++||.+ ...
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~-----------~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~-~~~~~~~~~ 64 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVK-----------SPD------EWIPIPGSIEAIARLKQAGYRVVVATNQS-GIARGLFTE 64 (181)
T ss_pred ccEEEEECCCCcccCCccccC-----------CHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCc-cccCCcCCH
Confidence 578999999998766422211 111 24689999999999999999999999986 310
Q ss_pred ------HHHHHHHHHhCCCCCCCcEEEecC----C-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cC
Q 025360 175 ------GQVTRDNLHNQGFVGYERLIMRTA----A-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TG 240 (254)
Q Consensus 175 ------r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g 240 (254)
++.....|++.|+. ++.++.... . ..+||++ ......++..|.. .+++|||+.+|+.+|+ +|
T Consensus 65 ~~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p---~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG 140 (181)
T PRK08942 65 AQLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKP---GMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAG 140 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCH---HHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCC
Confidence 12334567778884 555554432 1 2456644 3344456666654 5999999999999998 78
Q ss_pred CcEEEeCC
Q 025360 241 NRTFKLPN 248 (254)
Q Consensus 241 ~r~fklPN 248 (254)
.+++.++.
T Consensus 141 ~~~i~v~~ 148 (181)
T PRK08942 141 VTPVLVRT 148 (181)
T ss_pred CeEEEEcC
Confidence 88877753
No 57
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.35 E-value=1.3e-11 Score=103.85 Aligned_cols=105 Identities=13% Similarity=-0.095 Sum_probs=71.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc-EEEecCCCCCCCCc------ccHH-HHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER-LIMRTAADKGKNAV------TYKS-EIR 213 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~-lilr~~~~~~kp~~------~yK~-~~r 213 (254)
..+++||+.++++.|+++|++++++||.. +..+...++.+|+..++. .+...+....+|.. .-|. .++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~ 153 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGI----MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVE 153 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHH
Confidence 46789999999999999999999999999 778888899999876432 22222221112221 1122 233
Q ss_pred HHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360 214 KQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 214 ~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp~ 250 (254)
..++..|. ..+++|||+.+|+.++. +|..+..-|+|.
T Consensus 154 ~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 154 RLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 33344454 35999999999999888 565444447764
No 58
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.34 E-value=1.1e-11 Score=102.11 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=84.4
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L 182 (254)
.|++||||||+++.. +|. ... ..++....|++.++++.++++|++++++|||+ ..+...|..+|
T Consensus 1 iVisDIDGTL~~sd~------~~~-~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp-~~~~~~t~~~l 64 (157)
T smart00775 1 IVISDIDGTITKSDV------LGH-VVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARP-IGQADRTRSYL 64 (157)
T ss_pred CEEEecCCCCccccc------ccc-ccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCc-HHHHHHHHHHH
Confidence 389999999998741 110 000 01234567999999999999999999999999 88888899999
Q ss_pred Hh-----CCCCCCCcEEEecCCCC--------CCCCcccHHHHHHHHHH----cCCcEEEEEcCCcccccccc
Q 025360 183 HN-----QGFVGYERLIMRTAADK--------GKNAVTYKSEIRKQLLE----EGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 183 ~~-----~G~~~~~~lilr~~~~~--------~kp~~~yK~~~r~~l~~----~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+ ++++. ..+++++...- .+....+|....+.|.+ .+...++.+||..+|+.+-.
T Consensus 65 ~~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~ 136 (157)
T smart00775 65 SQIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYS 136 (157)
T ss_pred HHhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHH
Confidence 98 45763 45677665421 11112467666666665 36677888999999998765
No 59
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.33 E-value=9.2e-12 Score=108.75 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
..++||+.++|+.|+++ ++++++||.+ .. ++..|+..|++.++...+ ...||.+ ......+...|.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~-~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p---~~~~~a~~~~~~ 178 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGN-AQ--------PELFGLGDYFEFVLRAGPHGRSKPFS---DMYHLAAEKLNV 178 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCC-ch--------HHHCCcHHhhceeEecccCCcCCCcH---HHHHHHHHHcCC
Confidence 67889999999999975 9999999988 32 467899888877776655 4556654 233334555665
Q ss_pred c--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360 222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPN 248 (254)
. .+++|||++ .|+.||+ +|.+++.+..
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 4 499999995 9999997 8999988854
No 60
>PRK06769 hypothetical protein; Validated
Probab=99.32 E-value=7.6e-12 Score=104.43 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=83.3
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-----
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF----- 174 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~----- 174 (254)
+.++++||.||||--.. ++ .......++||+.++|++|+++|++++++||.+ +..
T Consensus 3 ~~~~~~~d~d~~~~~~~-~~------------------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~-~~~~~~~~ 62 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDT-TI------------------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQP-GIADGIAT 62 (173)
T ss_pred CCcEEEEeCCCcccCCC-CC------------------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCc-hhcCCcCC
Confidence 57899999999994210 00 001235689999999999999999999999987 421
Q ss_pred HHHHHHHHHhCCCCCCCcEEEe----cCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360 175 GQVTRDNLHNQGFVGYERLIMR----TAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 175 r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
...+...|+..|+..+ +.. +++ ..+||.+ ......+++.|.. .+++|||+.+|+++|+ +|..++.+
T Consensus 63 ~~~~~~~l~~~g~~~~---~~~~~~~~~~~~~~KP~p---~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 63 IADFVQELKGFGFDDI---YLCPHKHGDGCECRKPST---GMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHHHHHHhCCcCEE---EECcCCCCCCCCCCCCCH---HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 1234455778888643 332 222 3456654 3333455556654 5999999999999998 78888876
Q ss_pred C
Q 025360 247 P 247 (254)
Q Consensus 247 P 247 (254)
.
T Consensus 137 ~ 137 (173)
T PRK06769 137 R 137 (173)
T ss_pred e
Confidence 3
No 61
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=2.2e-11 Score=126.48 Aligned_cols=98 Identities=22% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC-CCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHcC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV-GYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEEG 220 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~-~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~G 220 (254)
.++||+.++++.|+++|++++++||.. +..+...|+++|+. .+++.++..++ ...||++ .|. ..++..|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~----~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~----~a~~~lg 232 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD----RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFL----AAAKILG 232 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc----HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHH----HHHHHcC
Confidence 479999999999999999999999999 77778889999996 56777777765 4567765 333 3455555
Q ss_pred Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.. .|++|||+.+|+++|+ +|++++.+...
T Consensus 233 v~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~ 264 (1057)
T PLN02919 233 VPTSECVVIEDALAGVQAARAAGMRCIAVTTT 264 (1057)
T ss_pred cCcccEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence 43 5999999999999998 79999988653
No 62
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.31 E-value=5.4e-11 Score=98.87 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-C---------C-------CCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-D---------K-------GKN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~---------~-------~kp 204 (254)
..++.||+.++++.|+++|++++++||.. +......|+..|+..+++.++..+. . . ..+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~ 145 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGN----DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCP 145 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCc----HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCC
Confidence 36899999999999999999999999999 6777788899999877666664332 0 0 011
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEE
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTF 244 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~f 244 (254)
....|..+.+.+....+..+++|||+.+|+.+|.....+|
T Consensus 146 ~g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 146 CGCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 1234655555554432577999999999999998554444
No 63
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.30 E-value=4.3e-11 Score=102.50 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=68.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE-------ecCCC-CCCCCcccH-HHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM-------RTAAD-KGKNAVTYK-SEI 212 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil-------r~~~~-~~kp~~~yK-~~~ 212 (254)
..++.||+.++++.|+++|++++++||.. +......++..|+..++...+ .+... .... ...| ...
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~----~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~ 157 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGF----DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVD-ASYKGKTL 157 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccC-CcccHHHH
Confidence 45789999999999999999999999998 677778888899986543211 11000 0000 0112 233
Q ss_pred HHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 213 RKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 213 r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+..++..|.. .+++|||+.+|+.++. +|..+..-|++
T Consensus 158 ~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~ 197 (219)
T TIGR00338 158 LILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFNAKP 197 (219)
T ss_pred HHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCCH
Confidence 3344555543 5899999999999987 56554443443
No 64
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.29 E-value=1.5e-11 Score=104.25 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec--CC-CCC--CCCcccHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT--AA-DKG--KNAVTYKSEIRKQL 216 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~--~~-~~~--kp~~~yK~~~r~~l 216 (254)
..+++||+.++++.|+++ ++++++||.. +..+...|+++|++.++...+.. ++ ..+ ++.+.-|....+.+
T Consensus 66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~ 140 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRER-FQVVILSDTF----YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL 140 (205)
T ss_pred hCCCCCCHHHHHHHHHhc-CCEEEEeCCc----HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence 467899999999999999 9999999999 78888899999998654322211 11 000 11122344444455
Q ss_pred HHcCCcEEEEEcCCcccccccc
Q 025360 217 LEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 217 ~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
...+ ..+++|||+.+|+..+.
T Consensus 141 ~~~~-~~~v~iGDs~~D~~~~~ 161 (205)
T PRK13582 141 KSLG-YRVIAAGDSYNDTTMLG 161 (205)
T ss_pred HHhC-CeEEEEeCCHHHHHHHH
Confidence 4433 67999999999997765
No 65
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.29 E-value=4.9e-12 Score=105.89 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=91.5
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHH-HH---HHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CccccH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAG-FR---AWALKGGCPAIPGVLVLFNKLIESGLKVILVTGR-DEETFG 175 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~-~~---~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR-~~e~~r 175 (254)
++.||||+|+|+-+..-+.. ++ .++.+.. -+ .-.......++||+.++++.|+++|++++++||+ . +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~----~ 73 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISL---LG-GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV----P 73 (174)
T ss_pred CcEEEEeCCCCCcCcccccc---cC-CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC----h
Confidence 46799999999987542211 11 0111000 00 0001134679999999999999999999999998 6 6
Q ss_pred HHHHHHHHhCCCC---------CCCcEEEecCCCCCCCCcccHHHHHHHHHHc---CC--cEEEEEcCCcccccccc-cC
Q 025360 176 QVTRDNLHNQGFV---------GYERLIMRTAADKGKNAVTYKSEIRKQLLEE---GY--RIWGNIGDQWSDLQGEC-TG 240 (254)
Q Consensus 176 ~~T~~~L~~~G~~---------~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~---Gy--~i~~~IGDq~sDi~ga~-~g 240 (254)
..+...|..+|+. .+++.++..+.. .++ +.. ..+.+.+.+. |. ..+++|||+..|+.+|+ +|
T Consensus 74 ~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~-~~~-kp~-~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aG 150 (174)
T TIGR01685 74 EWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKP-NKA-KQL-EMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYG 150 (174)
T ss_pred HHHHHHHHhCCcCCCCCcccHHHhceeeeeccCC-chH-HHH-HHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhC
Confidence 6777888999987 788877776542 111 111 1223333322 33 45999999999999998 79
Q ss_pred CcEEEeCCC
Q 025360 241 NRTFKLPNP 249 (254)
Q Consensus 241 ~r~fklPNp 249 (254)
.+++-++..
T Consensus 151 i~~i~v~~g 159 (174)
T TIGR01685 151 VTSCYCPSG 159 (174)
T ss_pred CEEEEcCCC
Confidence 999988653
No 66
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.27 E-value=2.1e-11 Score=100.01 Aligned_cols=127 Identities=19% Similarity=0.287 Sum_probs=94.2
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L 182 (254)
.||+|||||+..+.- +|- ... ..+++..-||+.++++.++++||+++++|+|+ ..+...|..||
T Consensus 1 VVvsDIDGTiT~SD~------~G~-------i~~--~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp-~~qa~~Tr~~L 64 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV------LGH-------ILP--ILGKDWTHPGAAELYRKIADNGYKILYLTARP-IGQANRTRSWL 64 (157)
T ss_pred CEEEeccCCcCccch------hhh-------hhh--ccCchhhhhcHHHHHHHHHHCCeEEEEECcCc-HHHHHHHHHHH
Confidence 489999999997731 110 000 02345678999999999999999999999999 99999999999
Q ss_pred HhC-----CCCCCCcEEEecCC--------CCCCCCcccHHHHHHHHHHc----CCcEEEEEcCCcccccccc-c---CC
Q 025360 183 HNQ-----GFVGYERLIMRTAA--------DKGKNAVTYKSEIRKQLLEE----GYRIWGNIGDQWSDLQGEC-T---GN 241 (254)
Q Consensus 183 ~~~-----G~~~~~~lilr~~~--------~~~kp~~~yK~~~r~~l~~~----Gy~i~~~IGDq~sDi~ga~-~---g~ 241 (254)
.++ ++|. .-+++.++. .-.+....||....+.+... +-.+...+|.+.+|+.+.. + -.
T Consensus 65 ~~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~ 143 (157)
T PF08235_consen 65 AQHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS 143 (157)
T ss_pred HHHHhCCccCCC-CCEEECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh
Confidence 999 8884 556666432 11122358898888888775 6678999999999998876 2 24
Q ss_pred cEEEe
Q 025360 242 RTFKL 246 (254)
Q Consensus 242 r~fkl 246 (254)
|.|.+
T Consensus 144 rIF~I 148 (157)
T PF08235_consen 144 RIFII 148 (157)
T ss_pred hEEEE
Confidence 55554
No 67
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.20 E-value=6.5e-11 Score=94.13 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=74.6
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CccccHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGR-DEETFGQVTRD 180 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR-~~e~~r~~T~~ 180 (254)
+.++||+||||+....... + -+. +. ...+++||+.++++.|+++|++++++||+ . +..+..
T Consensus 1 kli~~DlD~Tl~~~~~~~~----~---~~~------~~-~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~----~~~~~~ 62 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVV----G---EDP------II-DLEVTIKEIRDKLQTLKKNGFLLALASYNDD----PHVAYE 62 (128)
T ss_pred CEEEEeCCCCCCCCCcccc----c---CCc------ch-hhHHHHHHHHHHHHHHHHCCeEEEEEeCCCC----HHHHHH
Confidence 4789999999997631000 0 000 00 00168999999999999999999999999 6 566667
Q ss_pred HHHhCC-------CCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--Cc--EEEEEcCCcccccc
Q 025360 181 NLHNQG-------FVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--YR--IWGNIGDQWSDLQG 236 (254)
Q Consensus 181 ~L~~~G-------~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y~--i~~~IGDq~sDi~g 236 (254)
.|+..| +..+++.+..+.. .++| ...+..++..| .. .+++|||+..++.+
T Consensus 63 ~l~~~~~~~~i~~l~~~f~~~~~~~~-~pkp-----~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~ 123 (128)
T TIGR01681 63 LLKIFEDFGIIFPLAEYFDPLTIGYW-LPKS-----PRLVEIALKLNGVLKPKSILFVDDRPDNNEE 123 (128)
T ss_pred HHHhccccccchhhHhhhhhhhhcCC-CcHH-----HHHHHHHHHhcCCCCcceEEEECCCHhHHHH
Confidence 777777 5666665555432 2232 33445566666 54 59999999988765
No 68
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.20 E-value=2.1e-10 Score=98.36 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=79.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.++.|++.+.|+.|+++ ++++++||-. +......|++.|+..+++.++.+.+ ...||++..- ...++..|.
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~----~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f---~~~~~~~g~ 169 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGA----RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF---EYALEKLGV 169 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCC----hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHH---HHHHHHcCC
Confidence 68999999999999999 9999999987 6788899999999888777766655 5567765222 235666775
Q ss_pred c--EEEEEcCCc-ccccccc-cCCcEEEeCCCC
Q 025360 222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~ 250 (254)
. .+++|||+. +|+.||. +|++++-+..+.
T Consensus 170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 170 PPEEALFVGDSLENDILGARALGMKTVWINRGG 202 (229)
T ss_pred CcceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence 4 699999988 5768887 899988776544
No 69
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.20 E-value=1.9e-11 Score=100.16 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=77.1
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.++|+|||||||+++..++... +. + .. .--..++. .+++|+++|++++++||++ +..+..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~--~~--~-~~---------~~~~~~~~--~i~~Lk~~G~~i~IvTn~~----~~~~~~ 60 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNN--GE--E-IK---------AFNVRDGY--GIRCALKSGIEVAIITGRK----AKLVED 60 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCC--Cc--E-EE---------EEechhHH--HHHHHHHCCCEEEEEECCC----CHHHHH
Confidence 3689999999999976543321 00 0 00 00011222 7999999999999999999 677788
Q ss_pred HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
.|+++|+..++. . ..+| .....+.+...|. +.+++|||+.+|+.++. +|. .|.+.|.
T Consensus 61 ~l~~~gi~~~~~----~--~~~k-----~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~-~~~v~~~ 120 (154)
T TIGR01670 61 RCKTLGITHLYQ----G--QSNK-----LIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL-SVAVADA 120 (154)
T ss_pred HHHHcCCCEEEe----c--ccch-----HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC-eEecCCc
Confidence 999999985432 1 1222 2334444555554 35999999999999987 454 4666543
No 70
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.18 E-value=1.6e-10 Score=99.51 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=84.1
Q ss_pred CceEEEecCCccccchhhhh-hhccCC-------------C-C-----------CCh---HHHHHHHHhCCCCCchHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYK-GKRYGC-------------D-P-----------YDP---AGFRAWALKGGCPAIPGVLV 151 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~-~~~~g~-------------~-~-----------~~~---~~~~~~~~~~~~~~~pg~~e 151 (254)
+.+|+||+||||++...... ...++. + . +.. +...+.+. ...++.||+.+
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~pG~~e 81 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLL-ETAEIREGFHE 81 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHH-hCCCcCcCHHH
Confidence 45899999999998765442 112221 0 0 011 11222222 34789999999
Q ss_pred HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CC--cEEEecCC-CCCCCCcc----------cHHHHHHHH
Q 025360 152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YE--RLIMRTAA-DKGKNAVT----------YKSEIRKQL 216 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~--~lilr~~~-~~~kp~~~----------yK~~~r~~l 216 (254)
+++.|+++|++++++||.. +..+...|+++ +.. +. ...+.++. ...||.+. -|....+.+
T Consensus 82 ~l~~l~~~g~~~~IvS~~~----~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~ 156 (219)
T PRK09552 82 FVQFVKENNIPFYVVSGGM----DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKL 156 (219)
T ss_pred HHHHHHHcCCeEEEECCCc----HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHh
Confidence 9999999999999999999 77788888887 653 11 22233322 12233322 133333333
Q ss_pred HHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360 217 LEEGYRIWGNIGDQWSDLQGECTGNRTFK 245 (254)
Q Consensus 217 ~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk 245 (254)
.. ....+++|||+.+|+.+++.+..+|.
T Consensus 157 ~~-~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 157 SD-TNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred cc-CCCCEEEEeCCHHHHHHHHHCCccee
Confidence 22 22358999999999999984333443
No 71
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.17 E-value=3e-10 Score=104.88 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=88.2
Q ss_pred CceEEEecCCccccchh--hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc-------
Q 025360 101 MDAWILDVDDTCISNVY--YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE------- 171 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~------- 171 (254)
++.++||-||||..... |+.. + .....++||+.++|++|+++|++++++||.++
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~---------------~--~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~ 64 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVD---------------S--LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFP 64 (354)
T ss_pred CcEEEEeCCCCccCCCCcccccc---------------C--cccceECcCHHHHHHHHHhCCCeEEEEECCccccCcccc
Confidence 67899999999997531 1111 0 12478999999999999999999999999621
Q ss_pred c----ccHHHHHHHHHhCCCCCCCcEEEecC----C-CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-c
Q 025360 172 E----TFGQVTRDNLHNQGFVGYERLIMRTA----A-DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-T 239 (254)
Q Consensus 172 e----~~r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~ 239 (254)
+ ..+..+...|...|+. ++.++++.. + ..+||.+ ..+...+...+. ..+++|||+.+|+.+|. +
T Consensus 65 ~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p---~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~a 140 (354)
T PRK05446 65 QEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKT---GLVEEYLAEGAIDLANSYVIGDRETDVQLAENM 140 (354)
T ss_pred HHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCH---HHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHC
Confidence 1 1144566788899996 555666531 2 2445533 233334444444 45999999999999997 8
Q ss_pred CCcEEEeCCC
Q 025360 240 GNRTFKLPNP 249 (254)
Q Consensus 240 g~r~fklPNp 249 (254)
|.+++.+ ||
T Consensus 141 Gi~~I~v-~~ 149 (354)
T PRK05446 141 GIKGIRY-AR 149 (354)
T ss_pred CCeEEEE-EC
Confidence 8888866 44
No 72
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=100.30 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=96.0
Q ss_pred CCCceEEEecCCccccchhhhhhhc------cCC------------C-----------C-CChHHHHHHHHh--------
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKR------YGC------------D-----------P-YDPAGFRAWALK-------- 140 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~------~g~------------~-----------~-~~~~~~~~~~~~-------- 140 (254)
.+..+++||+||||++|...|.+.. +|. . . .++-+|.++..+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~ 87 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL 87 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 3467899999999999998776632 221 0 0 122233333321
Q ss_pred -CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC-CCC-CCcEEEecCC---CCCCCCc-ccHHHHH
Q 025360 141 -GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG-FVG-YERLIMRTAA---DKGKNAV-TYKSEIR 213 (254)
Q Consensus 141 -~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G-~~~-~~~lilr~~~---~~~kp~~-~yK~~~r 213 (254)
.....+||+.+|++.|+.+|+++.++|+++ ....+ ..+..++ +-. +.+.++ +++ ..+||++ +|..
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~-~~~~~---~k~~~~~~~~~~f~~~v~-~d~~~v~~gKP~Pdi~l~--- 159 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSST-SASFE---LKISRHEDIFKNFSHVVL-GDDPEVKNGKPDPDIYLK--- 159 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCC-cccHH---HHHHHhhHHHHhcCCCee-cCCccccCCCCCchHHHH---
Confidence 467899999999999999999999999998 44443 3334333 322 233344 333 4567766 4443
Q ss_pred HHHHHcCC---cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 214 KQLLEEGY---RIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 214 ~~l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+....|. .-|++++|+..++++++ +|+.++.+|++
T Consensus 160 -A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 160 -AAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred -HHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 3343443 45999999999999998 79999999983
No 73
>PLN02811 hydrolase
Probab=99.16 E-value=2.3e-10 Score=98.62 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH-HHHHHHHhCCCCCCCcEEEecC--C-CCCCCCcccHHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ-VTRDNLHNQGFVGYERLIMRTA--A-DKGKNAVTYKSEIRKQLL 217 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~-~T~~~L~~~G~~~~~~lilr~~--~-~~~kp~~~yK~~~r~~l~ 217 (254)
..+++||+.++|+.|+++|++++++||.. +. .....++..|+..|++.++..+ + ..+||.+. ..+..++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~----~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~---~~~~a~~ 148 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSH----KRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPD---IFLAAAR 148 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCc----hhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcH---HHHHHHH
Confidence 46789999999999999999999999988 43 3333344447766777777776 4 34576552 2233445
Q ss_pred HcC---C--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 218 EEG---Y--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 218 ~~G---y--~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+.| . ..|++|||+.+|+++|+ +|.+++.++++
T Consensus 149 ~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 149 RFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred HhCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 443 3 45999999999999997 79999999754
No 74
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.16 E-value=4.2e-11 Score=97.41 Aligned_cols=123 Identities=12% Similarity=-0.015 Sum_probs=82.0
Q ss_pred CceEEEecCCccccchhhh----hhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 101 MDAWILDVDDTCISNVYYY----KGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
+..+|+|+||||+.+..-- ....+... +. ...-.......+.||+.++|+.|+ +|++++++|+.. +.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~----~~ 72 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVP-VL---IDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL----RM 72 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEE-EE---eCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc----HH
Confidence 6789999999999874200 00000000 00 000000113467999999999998 679999999999 77
Q ss_pred HHHHHHHhCCCCC-CCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc
Q 025360 177 VTRDNLHNQGFVG-YERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 177 ~T~~~L~~~G~~~-~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~ 238 (254)
.++..|+..|+.. +++.++..++ ..+||. |.. .++..|. +.|++|||+..|+.+++
T Consensus 73 ~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~--~~k----~l~~l~~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 73 YADPVLDLLDPKKYFGYRRLFRDECVFVKGK--YVK----DLSLLGRDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHHHHhCcCCCEeeeEEECccccccCCe--Eee----cHHHcCCChhcEEEEECCHHHhhcCc
Confidence 7888899888854 4466666555 556664 332 3555554 46999999999999987
No 75
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=99.13 E-value=5.4e-10 Score=92.67 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=95.9
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCC---------ChHHHHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEE
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPY---------DPAGFRAWALKG--GCPAIPGVLVLFNKLIESGLKVIL 165 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~ 165 (254)
.+..+-+|-||||+|+|-++|++- +|.+.| ++.-|++-.... -.-|.+-+.+|++.-+.+|-+|+|
T Consensus 59 eG~~Pi~VsFDIDDTvLFsSp~F~---~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~F 135 (237)
T COG3700 59 EGRPPIAVSFDIDDTVLFSSPGFW---RGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYF 135 (237)
T ss_pred cCCCCeeEeeccCCeeEecccccc---cCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEE
Confidence 456688999999999999888763 333222 233344322221 245777889999999999999999
Q ss_pred EeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cC---
Q 025360 166 VTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TG--- 240 (254)
Q Consensus 166 vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g--- 240 (254)
+|||+ ...-+.+.+.|.+ +.+.....+++.++ +.||...-|. ..|++.+ +-+..||+.+|+.+|+ +|
T Consensus 136 vTGRt-~gk~d~vsk~Lak~F~i~~m~pv~f~Gd--k~k~~qy~Kt---~~i~~~~--~~IhYGDSD~Di~AAkeaG~Rg 207 (237)
T COG3700 136 VTGRT-PGKTDTVSKTLAKNFHITNMNPVIFAGD--KPKPGQYTKT---QWIQDKN--IRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred EecCC-CCcccccchhHHhhcccCCCcceeeccC--CCCccccccc---HHHHhcC--ceEEecCCchhhhHHHhcCccc
Confidence 99999 5544555556654 46655555666654 3344333343 3566554 5567999999999998 44
Q ss_pred CcEEEeCCCCC
Q 025360 241 NRTFKLPNPMY 251 (254)
Q Consensus 241 ~r~fklPNp~y 251 (254)
.|...-||..|
T Consensus 208 IRilRAaNSTy 218 (237)
T COG3700 208 IRILRAANSTY 218 (237)
T ss_pred eeEEecCCccC
Confidence 45555588877
No 76
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.13 E-value=9.8e-11 Score=96.77 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEE 219 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~ 219 (254)
..+++||+.++|+ +++++||.+ +......|+++|+..+++.+++.++ ...||++ .|. ..++..
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~----~~~~~~ 152 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS----HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYE----LVFDTV 152 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC----HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHH----HHHHHH
Confidence 4578999999998 388999999 7777888999999888777777665 4567765 333 345555
Q ss_pred CCc--EEEEEcCCcccccccc
Q 025360 220 GYR--IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 220 Gy~--i~~~IGDq~sDi~ga~ 238 (254)
|.. .|++|||+..|+.||+
T Consensus 153 ~~~p~~~l~vgD~~~Di~~A~ 173 (175)
T TIGR01493 153 GLPPDRVLMVAAHQWDLIGAR 173 (175)
T ss_pred CCCHHHeEeEecChhhHHHHh
Confidence 654 5999999999999986
No 77
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.11 E-value=7.2e-10 Score=92.23 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=80.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
.+.+++++|+|||++... ...++|++.++++.|+++|++++++||.+ . +..+
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~-~--~~~~ 74 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNA-G--EQRA 74 (170)
T ss_pred CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCc-h--HHHH
Confidence 568899999999998642 34689999999999999999999999988 3 2344
Q ss_pred HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360 179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fklP 247 (254)
...++..|+..+. ...||.+ ......+++.|.+ .+++|||+. +|+.+|+ +|..++.+.
T Consensus 75 ~~~~~~~gl~~~~--------~~~KP~p---~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~ 136 (170)
T TIGR01668 75 KAVEKALGIPVLP--------HAVKPPG---CAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVE 136 (170)
T ss_pred HHHHHHcCCEEEc--------CCCCCCh---HHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence 4556677775221 1235433 3334455666653 499999998 7999997 788888773
No 78
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.10 E-value=1.5e-10 Score=96.47 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+++|||+|||+.|..-++...+..-..|+ ... -.-++.|+++|++++++||++ ...+..
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~--------------~~D--~~~~~~L~~~Gi~laIiT~k~----~~~~~~ 66 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFD--------------IKD--GMGVIVLQLCGIDVAIITSKK----SGAVRH 66 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEe--------------cch--HHHHHHHHHCCCEEEEEECCC----cHHHHH
Confidence 789999999999998766654331111121 111 123677889999999999999 788889
Q ss_pred HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.|+++|+..|++.+ ++|| ..++..+...|.. .+++|||+.+|+.++......|..+|
T Consensus 67 ~l~~lgi~~~f~~~------kpkp-----~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 67 RAEELKIKRFHEGI------KKKT-----EPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HHHHCCCcEEEecC------CCCH-----HHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 99999998655421 2222 3445556666654 59999999999999984446666665
No 79
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.07 E-value=1.4e-10 Score=97.70 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
+.+.|+||+||||+++.-++....-....++ . .. ...++.|+++|++++++|||+ ...+.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~-----~---------~d--~~~i~~L~~~Gi~v~I~T~~~----~~~v~ 79 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN-----V---------RD--GYGIRCLLTSGIEVAIITGRK----SKLVE 79 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEe-----c---------cc--hHHHHHHHHCCCEEEEEeCCC----cHHHH
Confidence 5889999999999987422221100000010 0 00 135677888999999999999 67788
Q ss_pred HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360 180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR 242 (254)
Q Consensus 180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r 242 (254)
..++++|+..++. + ...| ...+++.+++.|.. .+++|||+.+|+.++. +|..
T Consensus 80 ~~l~~lgl~~~f~----g--~~~k-----~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 80 DRMTTLGITHLYQ----G--QSNK-----LIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS 134 (183)
T ss_pred HHHHHcCCceeec----C--CCcH-----HHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 8999999975432 2 1122 24555666777754 6999999999999997 6765
No 80
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.06 E-value=2.4e-09 Score=91.75 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=70.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCC-CCCC--CCcccHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAA-DKGK--NAVTYKSEIRKQL 216 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~k--p~~~yK~~~r~~l 216 (254)
..++.||+.++++.+++.| +++++||.. +..+...++++|++.++. +.+.+.+ ..+. ....-|....+++
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~----~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l 140 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTF----YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAF 140 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCCh----HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHH
Confidence 4579999999999999985 999999999 788888999999986543 4443211 1111 1123466666667
Q ss_pred HHcCCcEEEEEcCCcccccccc-cCCcEEEeC
Q 025360 217 LEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 217 ~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
.+.|. .+++|||+.+|+.... +|..+..-|
T Consensus 141 ~~~~~-~~v~vGDs~nDl~ml~~Ag~~ia~~a 171 (203)
T TIGR02137 141 KSLYY-RVIAAGDSYNDTTMLSEAHAGILFHA 171 (203)
T ss_pred HhhCC-CEEEEeCCHHHHHHHHhCCCCEEecC
Confidence 66664 5889999999998877 454444333
No 81
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.03 E-value=2.5e-09 Score=90.35 Aligned_cols=103 Identities=18% Similarity=0.066 Sum_probs=72.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCC-CCCCCC-----cccHH-HHH
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAA-DKGKNA-----VTYKS-EIR 213 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~kp~-----~~yK~-~~r 213 (254)
....|++.++++.++++|++++++|+.+ +......++.+|++.+.. +....++ ..++.. ..-|. .++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~----~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~ 161 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASL----TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALA 161 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHH
Confidence 4689999999999999999999999999 667777888899976432 2221221 122211 11232 233
Q ss_pred HHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 214 KQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 214 ~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+.+.+.|.. .++++||+.+|+..+. +|..++.-|+|
T Consensus 162 ~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 162 ELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 344555654 6899999999999887 67777777876
No 82
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.00 E-value=2.9e-09 Score=81.40 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=50.1
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
++||+||||... ..++||+.++++.|+++|.+++|+||++ ...++...+.|+
T Consensus 1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L~ 52 (101)
T PF13344_consen 1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKLK 52 (101)
T ss_dssp EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHHH
T ss_pred CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHHH
Confidence 689999999864 4589999999999999999999999999 888899999999
Q ss_pred hCCCCC
Q 025360 184 NQGFVG 189 (254)
Q Consensus 184 ~~G~~~ 189 (254)
+.|++.
T Consensus 53 ~~Gi~~ 58 (101)
T PF13344_consen 53 KLGIPV 58 (101)
T ss_dssp HTTTT-
T ss_pred hcCcCC
Confidence 999984
No 83
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.00 E-value=6.6e-09 Score=89.22 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=65.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC---cEEEecCC-CCCCCCc-c---------
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE---RLIMRTAA-DKGKNAV-T--------- 207 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~---~lilr~~~-~~~kp~~-~--------- 207 (254)
..++.||+.++++.|+++|++++++|+.. +.....+|+.++..... ++.+.+.. ...+|.+ .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~----~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~ 143 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGM----DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGC 143 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCc----HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCC
Confidence 57899999999999999999999999999 67777778776443221 23333322 1223322 1
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360 208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFK 245 (254)
Q Consensus 208 yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk 245 (254)
-|..+.+.+.. ....+++|||+.+|+.++..+..+|.
T Consensus 144 ~K~~~l~~~~~-~~~~~i~iGDg~~D~~~a~~Ad~~~a 180 (214)
T TIGR03333 144 CKPSLIRKLSE-PNDYHIVIGDSVTDVEAAKQSDLCFA 180 (214)
T ss_pred CHHHHHHHHhh-cCCcEEEEeCCHHHHHHHHhCCeeEe
Confidence 24444444443 23457899999999999985544443
No 84
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.99 E-value=5e-09 Score=86.36 Aligned_cols=94 Identities=19% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec--CC-CCC------CCCcccHHH
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT--AA-DKG------KNAVTYKSE 211 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~--~~-~~~------kp~~~yK~~ 211 (254)
...++.||+.++++.++++|++++++|+.. +..++..++++|+..+....+.. ++ ..+ .+...-|..
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~ 145 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGF----DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGK 145 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHH
Confidence 346678999999999999999999999999 78888999999997643222221 11 011 111233544
Q ss_pred HHHHH-HHcC--CcEEEEEcCCcccccccc
Q 025360 212 IRKQL-LEEG--YRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 212 ~r~~l-~~~G--y~i~~~IGDq~sDi~ga~ 238 (254)
..+++ ...| +..+++|||+.+|+..+.
T Consensus 146 ~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 146 VLKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred HHHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence 44443 3334 345899999999997754
No 85
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.96 E-value=2.8e-09 Score=93.26 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
+..++++||+|||+.+. ..++||+.++++.|+++|++++|+||++ .. +...
T Consensus 6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~-~~-~~~~ 56 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSP-RN-IFSL 56 (242)
T ss_pred hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCC-CC-hHHH
Confidence 34779999999999874 4579999999999999999999999977 32 2233
Q ss_pred HHHHHhCCCCC-CCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccc
Q 025360 179 RDNLHNQGFVG-YERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQG 236 (254)
Q Consensus 179 ~~~L~~~G~~~-~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~g 236 (254)
.+.|+++|++. +++.++.+.... ...++..+.+.|. +.+.+|||+..|+..
T Consensus 57 ~~~L~~~gl~~~~~~~Ii~s~~~~-------~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~ 110 (242)
T TIGR01459 57 HKTLKSLGINADLPEMIISSGEIA-------VQMILESKKRFDIRNGIIYLLGHLENDIIN 110 (242)
T ss_pred HHHHHHCCCCccccceEEccHHHH-------HHHHHhhhhhccCCCceEEEeCCcccchhh
Confidence 37899999986 677777754311 1223333334343 358889998777643
No 86
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.92 E-value=6.4e-09 Score=93.19 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPA-IPGVLVLFNKLIESGLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~ 177 (254)
.-++.|+||+||||++.. ..... -||+.++|++|+++|++++++||+. |..
T Consensus 124 ~~~kvIvFDLDgTLi~~~------------------------~~v~irdPgV~EaL~~LkekGikLaIaTS~~----Re~ 175 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDE------------------------EPVRIRDPRIYDSLTELKKRGCILVLWSYGD----RDH 175 (301)
T ss_pred ccceEEEEecCCCCcCCC------------------------CccccCCHHHHHHHHHHHHCCCEEEEEECCC----HHH
Confidence 457899999999999863 12323 4999999999999999999999999 788
Q ss_pred HHHHHHhCCCCCCCcEEEecCC
Q 025360 178 TRDNLHNQGFVGYERLIMRTAA 199 (254)
Q Consensus 178 T~~~L~~~G~~~~~~lilr~~~ 199 (254)
..+.|++.|+..|++.++++.+
T Consensus 176 v~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 176 VVESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred HHHHHHHcCCCcccCEEEECCc
Confidence 8899999999998888877765
No 87
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.91 E-value=5.3e-09 Score=101.14 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=81.3
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCC--ChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc----
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPY--DPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEE---- 172 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e---- 172 (254)
+..+++.||+||||+.+.. +..| ++..| ..++||+.+.|+.|+++|++|+++||.. .
T Consensus 166 ~~~Kia~fD~DGTLi~t~s--------g~~~~~~~~d~--------~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~-gI~~G 228 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKS--------GKVFPKGPDDW--------QIIFPEIPEKLKELEADGFKICIFTNQG-GIARG 228 (526)
T ss_pred ccCcEEEEECCCCccccCC--------CccCCCCHHHe--------eecccCHHHHHHHHHHCCCEEEEEECCc-ccccC
Confidence 4468999999999997631 1112 33333 1267999999999999999999999987 3
Q ss_pred -----ccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC------CcEEEEEcCCcccccccc
Q 025360 173 -----TFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG------YRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 173 -----~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G------y~i~~~IGDq~sDi~ga~ 238 (254)
.....+...|+++|++ ++++..... ..+||.+ .++...+...+ ...+++|||...|+.++.
T Consensus 229 ~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~p---Gm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~ 301 (526)
T TIGR01663 229 KINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLT---GMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGK 301 (526)
T ss_pred cccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCH---HHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHH
Confidence 2224567889999997 446666554 4567644 23333344332 234999999999997654
No 88
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.89 E-value=2.5e-08 Score=91.24 Aligned_cols=103 Identities=18% Similarity=0.104 Sum_probs=65.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEE-----ecCCCCCCCCcccHHHH-H
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIM-----RTAADKGKNAVTYKSEI-R 213 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lil-----r~~~~~~kp~~~yK~~~-r 213 (254)
..++.||+.++++.|++.|++++++||.. ...+...++++|+..... +-+ ++...........|... +
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~----~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~ 254 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGF----TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLT 254 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCc----chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHH
Confidence 47899999999999999999999999998 455666777888864211 111 11100000001224333 3
Q ss_pred HHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCCC
Q 025360 214 KQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPNP 249 (254)
Q Consensus 214 ~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPNp 249 (254)
+.++..|. ..+++|||+.+|+..+.+....+.+ |+
T Consensus 255 ~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA 291 (322)
T PRK11133 255 RLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA 291 (322)
T ss_pred HHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC
Confidence 33455665 4699999999999988733345554 54
No 89
>PLN02645 phosphoglycolate phosphatase
Probab=98.88 E-value=9.1e-09 Score=93.55 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=59.5
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
..++++||+||||++. ..++||+.++++.|+++|++++|+|||+ ...+....
T Consensus 27 ~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~-~~~~~~~~ 78 (311)
T PLN02645 27 SVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNS-TKSRAQYG 78 (311)
T ss_pred hCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCC-CCCHHHHH
Confidence 4789999999999975 2378999999999999999999999999 88888888
Q ss_pred HHHHhCCCCCCCcEEEec
Q 025360 180 DNLHNQGFVGYERLIMRT 197 (254)
Q Consensus 180 ~~L~~~G~~~~~~lilr~ 197 (254)
+.|+++|++...+-++.+
T Consensus 79 ~~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 79 KKFESLGLNVTEEEIFSS 96 (311)
T ss_pred HHHHHCCCCCChhhEeeh
Confidence 899999998544445544
No 90
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.83 E-value=1.4e-08 Score=92.69 Aligned_cols=113 Identities=15% Similarity=0.064 Sum_probs=81.6
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCC-CChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDP-YDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
.+++||+|+|+||-... .|... .. -.-..+++++.++++.|+++|++++++|+++ +..+
T Consensus 2 ~~k~~v~DlDnTlw~gv-------~~e~g~~~---------i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~----~~~a 61 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGV-------LGEDGIDN---------LNLSPLHKTLQEKIKTLKKQGFLLALASKND----EDDA 61 (320)
T ss_pred CeEEEEEcCCCCCCCCE-------EccCCccc---------cccCccHHHHHHHHHHHHhCCCEEEEEcCCC----HHHH
Confidence 37899999999998652 11000 00 0013468999999999999999999999999 7788
Q ss_pred HHHHHh----CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--CcEEEEEcCCccccccccc
Q 025360 179 RDNLHN----QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--YRIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 179 ~~~L~~----~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y~i~~~IGDq~sDi~ga~~ 239 (254)
...|++ .|+..++..+.... ++| ...++..+++.| ...+++|||+..|+.++++
T Consensus 62 ~~~l~~~~~~~~~~~~f~~~~~~~--~pk-----~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~ 121 (320)
T TIGR01686 62 KKVFERRKDFILQAEDFDARSINW--GPK-----SESLRKIAKKLNLGTDSFLFIDDNPAERANVKI 121 (320)
T ss_pred HHHHHhCccccCcHHHeeEEEEec--Cch-----HHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHH
Confidence 888998 88877766654432 222 234445555554 4679999999999999884
No 91
>PRK11590 hypothetical protein; Provisional
Probab=98.79 E-value=1.1e-07 Score=81.59 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCchHHHHHH-HHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--CCCC--CCcccHHHHHHHHH
Q 025360 143 CPAIPGVLVLF-NKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--DKGK--NAVTYKSEIRKQLL 217 (254)
Q Consensus 143 ~~~~pg~~ell-~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~yK~~~r~~l~ 217 (254)
..++||+.+++ +.++++|++++++||++ +..++..+..+|+-.-++++-+.-+ ..++ ....+.++....+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~----~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~ 169 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSP----QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLE 169 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCc----HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHH
Confidence 56799999999 57888999999999999 7788888898885222334332211 1122 11244455455554
Q ss_pred Hc---CCcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 218 EE---GYRIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 218 ~~---Gy~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+. ....+...||+.+|+.=-. ++..+..=|+|
T Consensus 170 ~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~ 205 (211)
T PRK11590 170 RKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG 205 (211)
T ss_pred HHhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence 32 4456778999999996544 45555555765
No 92
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.78 E-value=1.1e-07 Score=79.05 Aligned_cols=120 Identities=22% Similarity=0.202 Sum_probs=80.3
Q ss_pred hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCe--EEEEeCCCccc
Q 025360 96 LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLK--VILVTGRDEET 173 (254)
Q Consensus 96 ~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~--i~~vTgR~~e~ 173 (254)
++..|.+++|||.|+||.... .....|...+.++++++.+.. |.++||..+..
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 345789999999999998642 356778899999999999875 99999985211
Q ss_pred ---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHc----CCcEEEEEcCCc-ccccccc-cCCcEE
Q 025360 174 ---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE----GYRIWGNIGDQW-SDLQGEC-TGNRTF 244 (254)
Q Consensus 174 ---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~----Gy~i~~~IGDq~-sDi~ga~-~g~r~f 244 (254)
.....+..-+.+|++ +++-. ..||. . ...+.+.+... ....+++||||. +|+.+|. .|..++
T Consensus 91 ~d~~~~~a~~~~~~lgIp-----vl~h~--~kKP~-~-~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~ti 161 (168)
T PF09419_consen 91 DDPDGERAEALEKALGIP-----VLRHR--AKKPG-C-FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTI 161 (168)
T ss_pred cCccHHHHHHHHHhhCCc-----EEEeC--CCCCc-c-HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEE
Confidence 122333333567887 22221 33441 1 22333334332 245699999999 7999998 788888
Q ss_pred EeCCC
Q 025360 245 KLPNP 249 (254)
Q Consensus 245 klPNp 249 (254)
.+-++
T Consensus 162 lv~~g 166 (168)
T PF09419_consen 162 LVTDG 166 (168)
T ss_pred EEecC
Confidence 87665
No 93
>PRK08238 hypothetical protein; Validated
Probab=98.77 E-value=6.6e-08 Score=92.85 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCceEEEecCCccccchhhhhhhc--cCCCCC-----------ChHHHHHHHH------hCCCCCchHHHHHHHHHHHC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKR--YGCDPY-----------DPAGFRAWAL------KGGCPAIPGVLVLFNKLIES 159 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~--~g~~~~-----------~~~~~~~~~~------~~~~~~~pg~~ell~~L~~~ 159 (254)
......+||+||||+.+.-...-.. ....|+ ......+.+. ....+..|++.++++.++++
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 3456799999999998753332211 111111 0111111111 12345679999999999999
Q ss_pred CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 160 G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
|++++++|+++ +..++..++++|+ + +.++..++ ...|+.. |..... +..|-+-+.++||+.+|+....
T Consensus 88 G~~v~LaTas~----~~~a~~i~~~lGl--F-d~Vigsd~~~~~kg~~--K~~~l~--~~l~~~~~~yvGDS~~Dlp~~~ 156 (479)
T PRK08238 88 GRKLVLATASD----ERLAQAVAAHLGL--F-DGVFASDGTTNLKGAA--KAAALV--EAFGERGFDYAGNSAADLPVWA 156 (479)
T ss_pred CCEEEEEeCCC----HHHHHHHHHHcCC--C-CEEEeCCCccccCCch--HHHHHH--HHhCccCeeEecCCHHHHHHHH
Confidence 99999999999 7777888888897 3 44555554 3333321 322111 2223333678999999999887
Q ss_pred cCCcEEE
Q 025360 239 TGNRTFK 245 (254)
Q Consensus 239 ~g~r~fk 245 (254)
...+.+.
T Consensus 157 ~A~~av~ 163 (479)
T PRK08238 157 AARRAIV 163 (479)
T ss_pred hCCCeEE
Confidence 4334443
No 94
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.74 E-value=3.6e-08 Score=83.29 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=77.9
Q ss_pred eEEEecCCccccchhhhhh---hccCCC------C---C-ChHHH--------HH---HHHh----CCCCCchHHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKG---KRYGCD------P---Y-DPAGF--------RA---WALK----GGCPAIPGVLVLFN 154 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~---~~~g~~------~---~-~~~~~--------~~---~~~~----~~~~~~pg~~ell~ 154 (254)
.|.+||||||+|....+.+ ..|+.. . | ....| .+ .... ...+|+||+.|.++
T Consensus 4 ~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~ 83 (191)
T PF06941_consen 4 RIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALK 83 (191)
T ss_dssp EEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHH
T ss_pred EEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHH
Confidence 3899999999998754433 234432 0 1 11112 11 1111 35789999999999
Q ss_pred HHHHCCCeEEEEeCCCccc----cHHHHHHHHHhC--CCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEc
Q 025360 155 KLIESGLKVILVTGRDEET----FGQVTRDNLHNQ--GFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIG 228 (254)
Q Consensus 155 ~L~~~G~~i~~vTgR~~e~----~r~~T~~~L~~~--G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IG 228 (254)
.|.++|+.+++||+|+ .. ..+.|.+||+++ +++ ++.+++.++ | .. + +.+ +.|+
T Consensus 84 ~L~~~g~~~~~Itar~-~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K------~~----v---~~D--vlID 142 (191)
T PF06941_consen 84 KLRDKGHEIVIITARP-PEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----K------TL----V---GGD--VLID 142 (191)
T ss_dssp HHHTSTTEEEEEEE-S-SSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----G------GG----C-----S--EEEE
T ss_pred HHHHcCCcEEEEEecC-ccccchHHHHHHHHHHHHcCCCc-hheEEEecC----C------Ce----E---ecc--EEec
Confidence 9999999999999998 54 578999999998 444 677887743 1 10 1 123 5699
Q ss_pred CCccccccc-ccCCcEEEeCCC
Q 025360 229 DQWSDLQGE-CTGNRTFKLPNP 249 (254)
Q Consensus 229 Dq~sDi~ga-~~g~r~fklPNp 249 (254)
|+..-+... ..|..++.+..|
T Consensus 143 D~~~n~~~~~~~g~~~iLfd~p 164 (191)
T PF06941_consen 143 DRPHNLEQFANAGIPVILFDQP 164 (191)
T ss_dssp SSSHHHSS-SSESSEEEEE--G
T ss_pred CChHHHHhccCCCceEEEEcCC
Confidence 998765543 357778877665
No 95
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.73 E-value=5.8e-08 Score=87.16 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPA-IPGVLVLFNKLIESGLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~ 177 (254)
.-++.|+||+||||+... ..... -|++.++|.+|+++|++++++||++ +..
T Consensus 126 ~~~~~i~~D~D~TL~~~~------------------------~~v~irdp~V~EtL~eLkekGikLaIvTNg~----Re~ 177 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE------------------------EPVRIRDPFVYDSLDELKERGCVLVLWSYGN----REH 177 (303)
T ss_pred eeccEEEEecCCCccCCC------------------------CccccCChhHHHHHHHHHHCCCEEEEEcCCC----hHH
Confidence 457889999999999863 12223 4999999999999999999999998 778
Q ss_pred HHHHHHhCCCCCCCcEEEecCC
Q 025360 178 TRDNLHNQGFVGYERLIMRTAA 199 (254)
Q Consensus 178 T~~~L~~~G~~~~~~lilr~~~ 199 (254)
....|+++|+..+++.++++.+
T Consensus 178 v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 178 VVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred HHHHHHHcCCCccccEEEECCC
Confidence 8899999999998887777654
No 96
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.73 E-value=1.8e-07 Score=78.65 Aligned_cols=127 Identities=22% Similarity=0.223 Sum_probs=86.7
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc--------c
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE--------E 172 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~--------e 172 (254)
.+++++|-||||..-.+-|. .++++ -...||+.+.+..|++.|++++++||-++ +
T Consensus 5 ~k~lflDRDGtin~d~~~yv-----------~~~~~------~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~ 67 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV-----------DSLDD------FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEA 67 (181)
T ss_pred CcEEEEcCCCceecCCCccc-----------CcHHH------hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHH
Confidence 68999999999986542111 11223 34889999999999999999999999754 1
Q ss_pred ---ccHHHHHHHHHhCCCCCCCcEEEecCCC-----CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCC
Q 025360 173 ---TFGQVTRDNLHNQGFVGYERLIMRTAAD-----KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGN 241 (254)
Q Consensus 173 ---~~r~~T~~~L~~~G~~~~~~lilr~~~~-----~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~ 241 (254)
...+.....|++.|.. .+.++.++... -+||. .-.+...+.+.+.+ ...+|||..+|+++|. +|.
T Consensus 68 ~f~~~~~~m~~~l~~~gv~-id~i~~Cph~p~~~c~cRKP~---~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi 143 (181)
T COG0241 68 DFDKLHNKMLKILASQGVK-IDGILYCPHHPEDNCDCRKPK---PGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGI 143 (181)
T ss_pred HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcccCCC---hHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCC
Confidence 1223345677888885 67777776542 24542 23344455554443 5889999999999998 676
Q ss_pred cEEEeCC
Q 025360 242 RTFKLPN 248 (254)
Q Consensus 242 r~fklPN 248 (254)
+.+.+=+
T Consensus 144 ~~~~~~~ 150 (181)
T COG0241 144 KGVLVLT 150 (181)
T ss_pred CceEEEc
Confidence 6665533
No 97
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.69 E-value=3e-07 Score=79.38 Aligned_cols=102 Identities=19% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC-C-CCCC---C--CcccHHHHH-H
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA-A-DKGK---N--AVTYKSEIR-K 214 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~-~-~~~k---p--~~~yK~~~r-~ 214 (254)
.+..||+.++++.++++|++++++||.. ...+....+.+|++.+....+... + ..++ + ....|.... +
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~----~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~ 151 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGF----TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRE 151 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCCh----HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHH
Confidence 7889999999999999999999999999 677778888999986543322222 1 1221 0 123454444 3
Q ss_pred HHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360 215 QLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 215 ~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN 248 (254)
-+.+.|.+ .+..+||+.+|+.--. +|..+..=|.
T Consensus 152 ~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 152 LAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 34556776 6999999999985443 3444444343
No 98
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.69 E-value=1e-07 Score=84.34 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
+.++||+||||++.. .....++|++.+.++.|+++|++++|+|||+ ...++...+.
T Consensus 2 k~i~~D~DGtl~~~~-----------------------~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~-~~~~~~~~~~ 57 (257)
T TIGR01458 2 KGVLLDISGVLYISD-----------------------AKSGVAVPGSQEAVKRLRGASVKVRFVTNTT-KESKQDLLER 57 (257)
T ss_pred CEEEEeCCCeEEeCC-----------------------CcccCcCCCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHH
Confidence 589999999999752 0012389999999999999999999999999 7777888899
Q ss_pred HHhCCCCC
Q 025360 182 LHNQGFVG 189 (254)
Q Consensus 182 L~~~G~~~ 189 (254)
|+++|++.
T Consensus 58 l~~~g~~~ 65 (257)
T TIGR01458 58 LQRLGFDI 65 (257)
T ss_pred HHHcCCCC
Confidence 99999973
No 99
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.68 E-value=1.3e-07 Score=84.65 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=54.2
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.++|+|||||||++. ..++||+.++++.|+++|++++++|||+ ...+.....
T Consensus 2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns-~~~~~~~~~ 53 (279)
T TIGR01452 2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNS-TKSRAEYAL 53 (279)
T ss_pred ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHH
Confidence 468999999999874 3488999999999999999999999998 777888888
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.|+++|++.
T Consensus 54 ~l~~~G~~~ 62 (279)
T TIGR01452 54 KFARLGFNG 62 (279)
T ss_pred HHHHcCCCC
Confidence 999999974
No 100
>PRK10444 UMP phosphatase; Provisional
Probab=98.67 E-value=1.5e-07 Score=83.09 Aligned_cols=93 Identities=18% Similarity=0.380 Sum_probs=67.7
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
+.++||+||||++. ..++|++.++++.|+++|.+++|+|||+ ...+....+.
T Consensus 2 ~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~-~~~~~~~~~~ 53 (248)
T PRK10444 2 KNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYP-SQTGQDLANR 53 (248)
T ss_pred cEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHHH
Confidence 58999999999975 2579999999999999999999999999 8778888999
Q ss_pred HHhCCCCCCCcEEEecCCC------CCCCCcccH---HHHHHHHHHcCCc
Q 025360 182 LHNQGFVGYERLIMRTAAD------KGKNAVTYK---SEIRKQLLEEGYR 222 (254)
Q Consensus 182 L~~~G~~~~~~lilr~~~~------~~kp~~~yK---~~~r~~l~~~Gy~ 222 (254)
|++.|++.-.+.++++... +......|. ..+.+.+.+.|++
T Consensus 54 l~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~l~~~g~~ 103 (248)
T PRK10444 54 FATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHELYKAGFT 103 (248)
T ss_pred HHHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHHHHHCcCE
Confidence 9999996323334443210 000111222 4566677776765
No 101
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.65 E-value=7.6e-08 Score=85.75 Aligned_cols=98 Identities=21% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
+..++++||+||||.+. ..++||+.++++.|+++|.+++|+||++ ...++..
T Consensus 6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~-~~s~~~~ 57 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNS-TRSREVV 57 (269)
T ss_pred hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCC-CCCHHHH
Confidence 45789999999999863 5699999999999999999999999999 8889988
Q ss_pred HHHHHh-CCCCCCCcEEEecCC-C-----C-CCCCcccH---HHHHHHHHHcCCcEE
Q 025360 179 RDNLHN-QGFVGYERLIMRTAA-D-----K-GKNAVTYK---SEIRKQLLEEGYRIW 224 (254)
Q Consensus 179 ~~~L~~-~G~~~~~~lilr~~~-~-----~-~kp~~~yK---~~~r~~l~~~Gy~i~ 224 (254)
.+.|.. .|.+...+-++++.. . + .++..+|. ..++..++..|+.++
T Consensus 58 ~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~ 114 (269)
T COG0647 58 AARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELV 114 (269)
T ss_pred HHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEe
Confidence 888988 555443333444321 1 1 11123333 567778888887553
No 102
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.64 E-value=5.2e-07 Score=78.96 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=86.8
Q ss_pred eEEEecCCccccch-hhhhhhccCCCC--------CChHHHHHHHHh-------------------CCCCCchHHHHHHH
Q 025360 103 AWILDVDDTCISNV-YYYKGKRYGCDP--------YDPAGFRAWALK-------------------GGCPAIPGVLVLFN 154 (254)
Q Consensus 103 avIfDIDgTll~~~-~~~~~~~~g~~~--------~~~~~~~~~~~~-------------------~~~~~~pg~~ell~ 154 (254)
-++||.|+||++-. ..+.-..++.+. +....|.+++.. ...|..||+.++++
T Consensus 2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~ 81 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR 81 (234)
T ss_pred EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence 48999999999732 222222233221 122234444331 36789999999999
Q ss_pred HH--HHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--------------CC---CCCCcccHHHHHHH
Q 025360 155 KL--IESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--------------DK---GKNAVTYKSEIRKQ 215 (254)
Q Consensus 155 ~L--~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--------------~~---~kp~~~yK~~~r~~ 215 (254)
.+ ++.|+.++++|.-. .-..+.+|+++|+...+.-+.+... .+ ..|.-.-|..+.+.
T Consensus 82 ~l~~~~~~~~~~IiSDaN----s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~ 157 (234)
T PF06888_consen 82 FLAKNQRGFDLIIISDAN----SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKILER 157 (234)
T ss_pred HHHhcCCCceEEEEeCCc----HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHHHHH
Confidence 99 45899999999988 6788899999999865433333321 11 12222456666666
Q ss_pred HHHc----C--CcEEEEEcCCcccccccc
Q 025360 216 LLEE----G--YRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 216 l~~~----G--y~i~~~IGDq~sDi~ga~ 238 (254)
+.+. | |+.++||||.-+|+=.+.
T Consensus 158 ~~~~~~~~g~~~~rviYiGDG~nD~Cp~~ 186 (234)
T PF06888_consen 158 LLQEQAQRGVPYDRVIYIGDGRNDFCPAL 186 (234)
T ss_pred HHHHHhhcCCCcceEEEECCCCCCcCccc
Confidence 6543 4 788999999999996654
No 103
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.64 E-value=4.7e-07 Score=76.29 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=89.9
Q ss_pred CceEEEecCCccccchh--hhhhh-c------------cCC-CCC-------------ChHHHHHHHHhCCCCCchHHHH
Q 025360 101 MDAWILDVDDTCISNVY--YYKGK-R------------YGC-DPY-------------DPAGFRAWALKGGCPAIPGVLV 151 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~--~~~~~-~------------~g~-~~~-------------~~~~~~~~~~~~~~~~~pg~~e 151 (254)
.++|+||+|-|++.-+- ..+.. + -|+ .+| .......++...+....||+.+
T Consensus 16 ~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~e 95 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIRE 95 (227)
T ss_pred cCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHHH
Confidence 67999999999997541 11110 0 122 233 2344556666677889999999
Q ss_pred HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC---CC-cEEEecCC-------CCCCCCcccHHHHHHHHHH-c
Q 025360 152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG---YE-RLIMRTAA-------DKGKNAVTYKSEIRKQLLE-E 219 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~---~~-~lilr~~~-------~~~kp~~~yK~~~r~~l~~-~ 219 (254)
|.+.|+++|.+++++||-- |....-.-.++|++. |. .+.+..++ ..+..+.--|.+....+.+ .
T Consensus 96 Lv~~L~~~~~~v~liSGGF----~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~ 171 (227)
T KOG1615|consen 96 LVSRLHARGTQVYLISGGF----RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY 171 (227)
T ss_pred HHHHHHHcCCeEEEEcCCh----HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC
Confidence 9999999999999999998 666666667789983 22 22222221 1111122445555555554 3
Q ss_pred CCcEEEEEcCCcccccccccCCcE
Q 025360 220 GYRIWGNIGDQWSDLQGECTGNRT 243 (254)
Q Consensus 220 Gy~i~~~IGDq~sDi~ga~~g~r~ 243 (254)
.|..+.+|||..+|+.+-.-|.-.
T Consensus 172 ~~~~~~mvGDGatDlea~~pa~af 195 (227)
T KOG1615|consen 172 NYKTIVMVGDGATDLEAMPPADAF 195 (227)
T ss_pred ChheeEEecCCccccccCCchhhh
Confidence 345689999999999987744333
No 104
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.64 E-value=9.4e-08 Score=83.48 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcE-EEecCCCCCCCCc-ccHHHHHHHHHHcC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERL-IMRTAADKGKNAV-TYKSEIRKQLLEEG 220 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~l-ilr~~~~~~kp~~-~yK~~~r~~l~~~G 220 (254)
-...+++.++++.|+++|..+.++||-+ ...+ ..|...|+..|++. +.+....-.||++ +|.. +++..|
T Consensus 112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d-~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~----al~~l~ 182 (237)
T KOG3085|consen 112 WKYLDGMQELLQKLRKKGTILGIISNFD-DRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQL----ALERLG 182 (237)
T ss_pred ceeccHHHHHHHHHHhCCeEEEEecCCc-HHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHH----HHHHhC
Confidence 3567899999999999999999999998 5433 56777888766554 4444445667876 5554 355555
Q ss_pred Cc--EEEEEcCCc-ccccccc-cCCcEEEeCCCCC
Q 025360 221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPMY 251 (254)
Q Consensus 221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~y 251 (254)
.. .|+.|||.. +|++||+ +|.+++.+=|.++
T Consensus 183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~ 217 (237)
T KOG3085|consen 183 VKPEECVHIGDLLENDYEGARNLGWHAILVDNSIT 217 (237)
T ss_pred CChHHeEEecCccccccHhHHHcCCEEEEEccccc
Confidence 44 599999988 6999998 8999999988765
No 105
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.61 E-value=3.5e-07 Score=79.42 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=74.3
Q ss_pred HHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC---CCCCCCcEEEecCCCCCCCCccc
Q 025360 134 FRAWALKG--GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ---GFVGYERLIMRTAADKGKNAVTY 208 (254)
Q Consensus 134 ~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~---G~~~~~~lilr~~~~~~kp~~~y 208 (254)
|.+....+ ..+++||+.++|+.|+++|++++++||.+ +..+...+... ++..|++.++.. ...+||.+
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s----~~~~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p-- 155 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGS----VPAQKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEA-- 155 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHhhccccchhhhcceEEEe-CcccCCCH--
Confidence 44444433 45799999999999999999999999999 66666666654 454444444432 22345544
Q ss_pred HHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360 209 KSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 209 K~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklP 247 (254)
...+..+++.|.. .+++|||+..|+.+|+ +|++++.+-
T Consensus 156 -~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 156 -QSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred -HHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 2333345555654 4999999999999998 899988773
No 106
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=77.46 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=71.1
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+-+|||+||||.|..-||..++---..|+ ...|. -++.|.+.|++++++|||. -...+.
T Consensus 8 IkLli~DVDGvLTDG~ly~~~~Gee~KaFn--------------v~DG~--Gik~l~~~Gi~vAIITGr~----s~ive~ 67 (170)
T COG1778 8 IKLLILDVDGVLTDGKLYYDENGEEIKAFN--------------VRDGH--GIKLLLKSGIKVAIITGRD----SPIVEK 67 (170)
T ss_pred ceEEEEeccceeecCeEEEcCCCceeeeee--------------ccCcH--HHHHHHHcCCeEEEEeCCC----CHHHHH
Confidence 567999999999998877765432112232 12221 3677889999999999999 677888
Q ss_pred HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHH-HH--cCCcEEEEEcCCccccccc
Q 025360 181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQL-LE--EGYRIWGNIGDQWSDLQGE 237 (254)
Q Consensus 181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l-~~--~Gy~i~~~IGDq~sDi~ga 237 (254)
..+++|+.. ++.... + |....++| .+ .++..+++|||.++|+-.-
T Consensus 68 Ra~~LGI~~---~~qG~~-d--------K~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm 115 (170)
T COG1778 68 RAKDLGIKH---LYQGIS-D--------KLAAFEELLKKLNLDPEEVAYVGDDLVDLPVM 115 (170)
T ss_pred HHHHcCCce---eeechH-h--------HHHHHHHHHHHhCCCHHHhhhhcCccccHHHH
Confidence 999999973 343322 1 22222233 22 4456799999999998543
No 107
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.50 E-value=3.1e-07 Score=80.94 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=52.0
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
+.++||+||||++. ..++|++.++++.|+++|.+++|+||++ .+.++...+.
T Consensus 2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~-~r~~~~~~~~ 53 (249)
T TIGR01457 2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNS-TRTPESVAEM 53 (249)
T ss_pred CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHHH
Confidence 57999999999975 2367899999999999999999999855 5557888889
Q ss_pred HHhCCCCCC
Q 025360 182 LHNQGFVGY 190 (254)
Q Consensus 182 L~~~G~~~~ 190 (254)
|++.|++.-
T Consensus 54 l~~~g~~~~ 62 (249)
T TIGR01457 54 LASFDIPAT 62 (249)
T ss_pred HHHcCCCCC
Confidence 999999753
No 108
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.48 E-value=4.5e-07 Score=78.02 Aligned_cols=59 Identities=24% Similarity=0.204 Sum_probs=47.6
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.++||+||||++.. ...-|.+.+.+++|+++|++++++|||+ ......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~ 52 (230)
T PRK01158 3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNV----LCFARA 52 (230)
T ss_pred eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCc----hHHHHH
Confidence 4689999999999752 2355788899999999999999999999 555556
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.+..+|++.
T Consensus 53 ~~~~l~~~~ 61 (230)
T PRK01158 53 AAKLIGTSG 61 (230)
T ss_pred HHHHhCCCC
Confidence 667777764
No 109
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.47 E-value=4.7e-07 Score=79.75 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=49.2
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.|+|||||||+++. ....|...+.+++|+++|++++++|||+ ...+..
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~----~~~~~~ 52 (272)
T PRK10530 3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRH----HVAIHP 52 (272)
T ss_pred ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC----hHHHHH
Confidence 5789999999999762 2356678899999999999999999999 566677
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.++++|+..
T Consensus 53 ~~~~l~~~~ 61 (272)
T PRK10530 53 FYQALALDT 61 (272)
T ss_pred HHHhcCCCC
Confidence 788888864
No 110
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.47 E-value=7e-07 Score=78.85 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=48.8
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.|++||||||++.. ...-+...+.+++|+++|++++++|||+ ...+..
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~ 52 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRP----YAGVHR 52 (270)
T ss_pred eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCC----hHHHHH
Confidence 5789999999999752 2355778999999999999999999999 666677
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.++++|+..
T Consensus 53 ~~~~l~~~~ 61 (270)
T PRK10513 53 YLKELHMEQ 61 (270)
T ss_pred HHHHhCCCC
Confidence 788888753
No 111
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.46 E-value=5.2e-07 Score=79.96 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=50.4
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.++|||||||++.. ...-+...+.+++|+++|++++++|||+ ......
T Consensus 2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~ 51 (272)
T PRK15126 2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRH----VLEMQH 51 (272)
T ss_pred ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHH
Confidence 4689999999999752 2466778999999999999999999999 667777
Q ss_pred HHHhCCCCCC
Q 025360 181 NLHNQGFVGY 190 (254)
Q Consensus 181 ~L~~~G~~~~ 190 (254)
.++++|+..+
T Consensus 52 ~~~~l~~~~~ 61 (272)
T PRK15126 52 ILGALSLDAY 61 (272)
T ss_pred HHHHcCCCCc
Confidence 8888888743
No 112
>PRK10976 putative hydrolase; Provisional
Probab=98.45 E-value=5.4e-07 Score=79.44 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=48.9
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
++.|++||||||++.. ...-+...+.+++|+++|++++++|||+ ......
T Consensus 2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~ 51 (266)
T PRK10976 2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRH----HVDVGQ 51 (266)
T ss_pred ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----hHHHHH
Confidence 4689999999999762 2355778999999999999999999999 566667
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.++.+|++.
T Consensus 52 ~~~~l~~~~ 60 (266)
T PRK10976 52 IRDNLEIKS 60 (266)
T ss_pred HHHhcCCCC
Confidence 778888864
No 113
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.45 E-value=6e-07 Score=74.64 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCC------CCC-ccc--HHHHHHHH-
Q 025360 147 PGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKG------KNA-VTY--KSEIRKQL- 216 (254)
Q Consensus 147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~------kp~-~~y--K~~~r~~l- 216 (254)
|++.++++.+++.|++++++|+.+ +..++..++..|++.. .++.....+.. +-. ... |....+.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~----~~~i~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~ 166 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP----DEIIEPIAERLGIDDD-NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELY 166 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE----HHHHHHHHHHTTSSEG-GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCCce-EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHH
Confidence 555599999999999999999999 7888888889999852 22222211110 000 012 55555555
Q ss_pred --H--HcCCcEEEEEcCCcccccc
Q 025360 217 --L--EEGYRIWGNIGDQWSDLQG 236 (254)
Q Consensus 217 --~--~~Gy~i~~~IGDq~sDi~g 236 (254)
. ..+...+++|||+.+|+..
T Consensus 167 ~~~~~~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 167 IRDEEDIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHHTHTCCEEEEEESSGGGHHH
T ss_pred HHhhcCCCCCeEEEEECCHHHHHH
Confidence 1 2457789999999999864
No 114
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.44 E-value=4.8e-06 Score=74.54 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEE------EecCC-CCCCC
Q 025360 132 AGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLI------MRTAA-DKGKN 204 (254)
Q Consensus 132 ~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~li------lr~~~-~~~kp 204 (254)
+...+.+.....++.||+.+|++.|+++|++++++|+.. +...+..|+++|+...+..+ +..++ ..+++
T Consensus 109 e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~----~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~ 184 (277)
T TIGR01544 109 AKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI----GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFK 184 (277)
T ss_pred HHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc----HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCC
Confidence 333444444578999999999999999999999999999 78888899999985333222 33333 33444
Q ss_pred Cc----ccHHH-HHH-HHHH----cCCcEEEEEcCCcccccccc
Q 025360 205 AV----TYKSE-IRK-QLLE----EGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 205 ~~----~yK~~-~r~-~l~~----~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+ ..|.. .+. ..+. ....-+++|||+.+|+..+.
T Consensus 185 ~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~ 228 (277)
T TIGR01544 185 GPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD 228 (277)
T ss_pred CCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence 33 22322 221 1222 23456999999999999987
No 115
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.44 E-value=6.3e-07 Score=79.75 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=50.8
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.|++||||||++.. ....+++.+.++.|+++|++++++|||+ ......
T Consensus 4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~----~~~~~~ 53 (273)
T PRK00192 4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKT----AAEVEV 53 (273)
T ss_pred ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence 5689999999999752 2355789999999999999999999999 677778
Q ss_pred HHHhCCCCCC
Q 025360 181 NLHNQGFVGY 190 (254)
Q Consensus 181 ~L~~~G~~~~ 190 (254)
.++++|+..+
T Consensus 54 ~~~~l~l~~~ 63 (273)
T PRK00192 54 LRKELGLEDP 63 (273)
T ss_pred HHHHcCCCCC
Confidence 8888998754
No 116
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.41 E-value=8.2e-07 Score=76.02 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=45.6
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
+.|++||||||+++. ...-|.+.+.+++|+++|++++++|||+ .......
T Consensus 2 k~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~----~~~~~~~ 51 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNT----VPFARAL 51 (215)
T ss_pred cEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc----chhHHHH
Confidence 579999999999752 3356788999999999999999999999 4445555
Q ss_pred HHhCCCC
Q 025360 182 LHNQGFV 188 (254)
Q Consensus 182 L~~~G~~ 188 (254)
++.+++.
T Consensus 52 ~~~l~~~ 58 (215)
T TIGR01487 52 AVLIGTS 58 (215)
T ss_pred HHHhCCC
Confidence 5666665
No 117
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.38 E-value=1.1e-06 Score=76.47 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=46.7
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|+|||||||++.. ...+++.+.+++|+++|++++++|||+ +......++
T Consensus 2 i~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~----~~~~~~~~~ 50 (225)
T TIGR02461 2 IFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKT----RAEQEYYRE 50 (225)
T ss_pred EEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHH
Confidence 7899999999841 135678999999999999999999999 677777888
Q ss_pred hCCCCC
Q 025360 184 NQGFVG 189 (254)
Q Consensus 184 ~~G~~~ 189 (254)
++|+..
T Consensus 51 ~lg~~~ 56 (225)
T TIGR02461 51 ELGVEP 56 (225)
T ss_pred HcCCCC
Confidence 999854
No 118
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.38 E-value=1.1e-06 Score=75.42 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=46.4
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|++|||||||++. ....+.+.+.++.|+++|++++++|||+ ...+...++
T Consensus 2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~----~~~~~~~~~ 51 (221)
T TIGR02463 2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKT----AAEVEYLQK 51 (221)
T ss_pred EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHH
Confidence 7899999999752 2245558899999999999999999999 777788888
Q ss_pred hCCCC
Q 025360 184 NQGFV 188 (254)
Q Consensus 184 ~~G~~ 188 (254)
.+|+.
T Consensus 52 ~l~~~ 56 (221)
T TIGR02463 52 ALGLT 56 (221)
T ss_pred HcCCC
Confidence 88876
No 119
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.38 E-value=6.3e-06 Score=70.94 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCCchHHHHHHH-HHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--CCCC--CCcccHHHHHHHHH
Q 025360 143 CPAIPGVLVLFN-KLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--DKGK--NAVTYKSEIRKQLL 217 (254)
Q Consensus 143 ~~~~pg~~ell~-~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~yK~~~r~~l~ 217 (254)
..++|++.++++ .++++|++++++||++ +..++...+..|+-+-++++-+.-. +.++ ....+.++....++
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~----~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~ 168 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSP----QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLE 168 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCc----HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHH
Confidence 367999999996 7888999999999999 6667777777555322344432211 1121 11233344444444
Q ss_pred H---cCCcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360 218 E---EGYRIWGNIGDQWSDLQGEC-TGNRTFKLPNP 249 (254)
Q Consensus 218 ~---~Gy~i~~~IGDq~sDi~ga~-~g~r~fklPNp 249 (254)
+ ..+..+...||+.+|+.=-. ++..+..=|++
T Consensus 169 ~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HHhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 2 25567778999999996543 56556555665
No 120
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.37 E-value=8.4e-07 Score=75.99 Aligned_cols=55 Identities=25% Similarity=0.196 Sum_probs=43.5
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|+|||||||+++. ...-+.+.+.+++|+++|++++++|||+ .......++
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~----~~~~~~~~~ 50 (225)
T TIGR01482 1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNS----VQFARALAK 50 (225)
T ss_pred CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc----hHHHHHHHH
Confidence 5899999999863 2345677889999999999999999999 555555666
Q ss_pred hCCCC
Q 025360 184 NQGFV 188 (254)
Q Consensus 184 ~~G~~ 188 (254)
.+|++
T Consensus 51 ~l~~~ 55 (225)
T TIGR01482 51 LIGTP 55 (225)
T ss_pred HhCCC
Confidence 67754
No 121
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.36 E-value=1.4e-06 Score=71.95 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=74.3
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCC-hHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYD-PAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
++.+|+|+||||+.+...-... . ..|. .-..+.-...--...-||+.++|+.|.+. ++|++.|+.+ +....
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~--~-~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~----~~yA~ 72 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV--D-ADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASL----EEYAD 72 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC--C-CceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCc----HHHHH
Confidence 4689999999999764221110 0 0000 00000000000235779999999999988 9999999999 56666
Q ss_pred HHHHhCCCCC-CCc-EEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc
Q 025360 180 DNLHNQGFVG-YER-LIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 180 ~~L~~~G~~~-~~~-lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~ 238 (254)
..|..++... +++ .+.|......++. |. +.|...|.. -+++|||+..|+.++.
T Consensus 73 ~il~~ldp~~~~f~~~l~r~~~~~~~~~--~~----K~L~~l~~~~~~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 73 PVLDILDRGGKVISRRLYRESCVFTNGK--YV----KDLSLVGKDLSKVIIIDNSPYSYSLQP 129 (162)
T ss_pred HHHHHHCcCCCEEeEEEEccccEEeCCC--EE----eEchhcCCChhhEEEEeCChhhhccCc
Confidence 6777777654 443 3444332222221 21 234545543 5999999999999876
No 122
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.35 E-value=1.2e-06 Score=75.03 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=48.4
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|++||||||++.. ...-|.+.+.++.|+++|++++++|||+ .......+.
T Consensus 1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~----~~~~~~~~~ 50 (254)
T PF08282_consen 1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRS----YSSIKRLLK 50 (254)
T ss_dssp EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSST----HHHHHHHHH
T ss_pred cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCc----ccccccccc
Confidence 6899999999852 2266899999999999999999999999 777888888
Q ss_pred hCCCCC
Q 025360 184 NQGFVG 189 (254)
Q Consensus 184 ~~G~~~ 189 (254)
..++..
T Consensus 51 ~~~~~~ 56 (254)
T PF08282_consen 51 ELGIDD 56 (254)
T ss_dssp HTTHCS
T ss_pred cccchh
Confidence 888873
No 123
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=76.98 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=51.3
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.|+|||||||++.. ...-+.+.+.+++++++|++++++|||+ ......
T Consensus 3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~----~~~~~~ 52 (264)
T COG0561 3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRP----LPDVLS 52 (264)
T ss_pred eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----hHHHHH
Confidence 5789999999999863 3377888999999999999999999999 677778
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.++.+|+..
T Consensus 53 ~~~~l~~~~ 61 (264)
T COG0561 53 ILEELGLDG 61 (264)
T ss_pred HHHHcCCCc
Confidence 888888875
No 124
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.34 E-value=1.5e-06 Score=77.23 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
.++.|++||||||++.. ....+.+.+.+++|+++|++++++|||+ .....
T Consensus 6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~----~~~i~ 55 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKT----AAEML 55 (271)
T ss_pred CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCC----HHHHH
Confidence 47889999999999752 2244668899999999999999999999 66677
Q ss_pred HHHHhCCCC
Q 025360 180 DNLHNQGFV 188 (254)
Q Consensus 180 ~~L~~~G~~ 188 (254)
..++++|++
T Consensus 56 ~~~~~l~~~ 64 (271)
T PRK03669 56 PLQQTLGLQ 64 (271)
T ss_pred HHHHHhCCC
Confidence 778888885
No 125
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.32 E-value=1.7e-06 Score=77.80 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=49.1
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
++.|++|||||||+.. ....+.+.+.+++|+++|+.|+++|||+ ......
T Consensus 1 ~KLIftDLDGTLLd~~--------------------------~~~~~~a~~aL~~Lk~~GI~vVlaTGRt----~~ev~~ 50 (302)
T PRK12702 1 MRLVLSSLDGSLLDLE--------------------------FNSYGAARQALAALERRSIPLVLYSLRT----RAQLEH 50 (302)
T ss_pred CcEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence 4678999999999863 2234567899999999999999999999 777777
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.++++|+..
T Consensus 51 l~~~Lgl~~ 59 (302)
T PRK12702 51 LCRQLRLEH 59 (302)
T ss_pred HHHHhCCCC
Confidence 888888874
No 126
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.32 E-value=1.9e-06 Score=75.58 Aligned_cols=56 Identities=29% Similarity=0.412 Sum_probs=47.0
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
++|||||||++.. ...-+.+.+.+++|+++|++++++|||+ .......++
T Consensus 2 i~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~----~~~~~~~~~ 51 (256)
T TIGR00099 2 IFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRP----YKEVKNILK 51 (256)
T ss_pred EEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHH
Confidence 7899999999852 2355778999999999999999999999 666777888
Q ss_pred hCCCCC
Q 025360 184 NQGFVG 189 (254)
Q Consensus 184 ~~G~~~ 189 (254)
++|+..
T Consensus 52 ~~~~~~ 57 (256)
T TIGR00099 52 ELGLDT 57 (256)
T ss_pred HcCCCC
Confidence 888863
No 127
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.30 E-value=1.9e-06 Score=75.76 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=47.1
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|++||||||++.. ...++.+.+.++.|+++|++++++|||+ .......++
T Consensus 2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~----~~~~~~~~~ 51 (256)
T TIGR01486 2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKT----AAEVEYLRK 51 (256)
T ss_pred EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHH
Confidence 7899999999763 1134568999999999999999999999 777788899
Q ss_pred hCCCCC
Q 025360 184 NQGFVG 189 (254)
Q Consensus 184 ~~G~~~ 189 (254)
++|++.
T Consensus 52 ~~~~~~ 57 (256)
T TIGR01486 52 ELGLED 57 (256)
T ss_pred HcCCCC
Confidence 999864
No 128
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.26 E-value=1e-06 Score=72.69 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=63.7
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCc-hHHHHHHHHHHHCCCeEEEEeCCCcc--------
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAI-PGVLVLFNKLIESGLKVILVTGRDEE-------- 172 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-pg~~ell~~L~~~G~~i~~vTgR~~e-------- 172 (254)
+...||+||||+.+.. +..|. ..+++| ..+ |++.+.|++|.++|++|+++||-.+-
T Consensus 1 Kia~fD~DgTLi~~~s--------~~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~ 65 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS--------GKKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD 65 (159)
T ss_dssp SEEEE-SCTTTEE-ST--------STTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred CEEEEeCCCCccCCCC--------CCcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence 3578999999998742 11121 011111 233 57999999999999999999997531
Q ss_pred --ccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHH-Hc------CCcEEEEEcCCccc
Q 025360 173 --TFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLL-EE------GYRIWGNIGDQWSD 233 (254)
Q Consensus 173 --~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~-~~------Gy~i~~~IGDq~sD 233 (254)
..+......|+.+|++. .++..... .-+||.. ++...+. .. ......+|||...+
T Consensus 66 ~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 66 LENFHEKIENILKELGIPI--QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccCCC
Confidence 22345567788899982 44544433 4567643 2222222 21 22358999997443
No 129
>PTZ00174 phosphomannomutase; Provisional
Probab=98.24 E-value=4.3e-06 Score=73.44 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
..+.|+||||||||++. ...-|...+.+++++++|++++++|||+ .....
T Consensus 4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~----~~~i~ 53 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSD----YPKIK 53 (247)
T ss_pred CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHH
Confidence 46789999999999763 3355678899999999999999999999 44555
Q ss_pred HHHH
Q 025360 180 DNLH 183 (254)
Q Consensus 180 ~~L~ 183 (254)
+.|.
T Consensus 54 ~~l~ 57 (247)
T PTZ00174 54 EQLG 57 (247)
T ss_pred HHHh
Confidence 5554
No 130
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.22 E-value=2.7e-06 Score=74.35 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=50.8
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
++||+||||+++ ..++|++.+.++.++++|+++.|+||.. .+.+....+.|.
T Consensus 1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~ 52 (236)
T TIGR01460 1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLS 52 (236)
T ss_pred CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHH
Confidence 589999999986 3368899999999999999999999877 666888889999
Q ss_pred h-CCCCC
Q 025360 184 N-QGFVG 189 (254)
Q Consensus 184 ~-~G~~~ 189 (254)
+ .|++.
T Consensus 53 ~~~g~~~ 59 (236)
T TIGR01460 53 SLLGVDV 59 (236)
T ss_pred HhcCCCC
Confidence 8 78864
No 131
>PTZ00445 p36-lilke protein; Provisional
Probab=98.20 E-value=2e-05 Score=67.67 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=104.0
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHH---HhC
Q 025360 65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWA---LKG 141 (254)
Q Consensus 65 ~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~---~~~ 141 (254)
+.++.|..++++. ...-.+.|..+++.++. .|.++|++|+|-||+... - || |.+.. ..-
T Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~--~GIk~Va~D~DnTlI~~H------s-gG-------~~~~~~~~~~~ 72 (219)
T PTZ00445 11 DAFKEYIESGLFD--HLNPHESADKFVDLLNE--CGIKVIASDFDLTMITKH------S-GG-------YIDPDNDDIRV 72 (219)
T ss_pred HHHHHHHHhcccc--cCCHHHHHHHHHHHHHH--cCCeEEEecchhhhhhhh------c-cc-------ccCCCcchhhh
Confidence 4567788888773 45556677777766553 579999999999999731 0 11 11110 001
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------------HHHHHHHHHhCCCCC-CCcE-------EEecCC--
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------------GQVTRDNLHNQGFVG-YERL-------IMRTAA-- 199 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------------r~~T~~~L~~~G~~~-~~~l-------ilr~~~-- 199 (254)
...+-|....++..|++.|++|++||=.+ +.. .+....-|++-+... -..+ .-.+.+
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd-~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFSD-KELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEccc-hhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence 23477889999999999999999999887 322 123444555433321 0011 101111
Q ss_pred --CCCCCCcccHHH-HHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360 200 --DKGKNAVTYKSE-IRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM 250 (254)
Q Consensus 200 --~~~kp~~~yK~~-~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~ 250 (254)
.-.||.+..|+- +...+++.|.. .++.|+|...-+.+|. .|..++-++++.
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~e 208 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGNE 208 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCChH
Confidence 123566655432 12344555654 5999999999999987 799999988763
No 132
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.20 E-value=9.9e-06 Score=74.66 Aligned_cols=100 Identities=25% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-C-------CCCCCcEEEecCCCC-------------
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-G-------FVGYERLIMRTAADK------------- 201 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G-------~~~~~~lilr~~~~~------------- 201 (254)
..+.||+.++|+.|+++|++++++||.+ +..|...|+.+ | +..|++.++.+..-+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~----~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~ 258 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSD----YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVD 258 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEe
Confidence 4568999999999999999999999999 88888889886 7 777777777654210
Q ss_pred ---C--C--------CCcccHHH---HHHHHHHcCCcEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360 202 ---G--K--------NAVTYKSE---IRKQLLEEGYRIWGNIGDQW-SDLQGEC--TGNRTFKL 246 (254)
Q Consensus 202 ---~--k--------p~~~yK~~---~r~~l~~~Gy~i~~~IGDq~-sDi~ga~--~g~r~fkl 246 (254)
+ + +..+|.-+ ...++....-..+++|||+. +|+.+++ +|.+++.+
T Consensus 259 ~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI 322 (343)
T TIGR02244 259 VETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI 322 (343)
T ss_pred CCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence 0 0 11133211 11112122235699999999 6999997 89999865
No 133
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.18 E-value=2.6e-05 Score=64.16 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=79.8
Q ss_pred CCCceEEEecCCccccchhhhhhh-c--cCCCCCChHH---HHHHH---HhCCCCCchHHHHHHHHHHHCCCeEEEEeCC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGK-R--YGCDPYDPAG---FRAWA---LKGGCPAIPGVLVLFNKLIESGLKVILVTGR 169 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~-~--~g~~~~~~~~---~~~~~---~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR 169 (254)
.++..+|+|+|+||+.+..-.... . +.....+.+. ...+. ........||+.++|+.|.+. ++++++|+.
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence 578999999999999875321000 0 0000000000 00000 001245789999999999955 999999999
Q ss_pred CccccHHHHHHHHHhCCCCC-CC-cEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEEeC
Q 025360 170 DEETFGQVTRDNLHNQGFVG-YE-RLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLP 247 (254)
Q Consensus 170 ~~e~~r~~T~~~L~~~G~~~-~~-~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fklP 247 (254)
+ +..+...|+.++... ++ +.++..++..+ ...|. + ..+-....+.++.|+|+..=..... .-.+.++
T Consensus 83 ~----~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~---~~~Kd-L-~~i~~~d~~~vvivDd~~~~~~~~~--~N~i~i~ 151 (156)
T TIGR02250 83 T----RAYAQAIAKLIDPDGKYFGDRIISRDESGS---PHTKS-L-LRLFPADESMVVIIDDREDVWPWHK--RNLIQIE 151 (156)
T ss_pred c----HHHHHHHHHHhCcCCCeeccEEEEeccCCC---Ccccc-H-HHHcCCCcccEEEEeCCHHHhhcCc--cCEEEeC
Confidence 9 677777888888773 54 44444333222 12232 1 1122223456888999985444433 2355555
Q ss_pred CCCCC
Q 025360 248 NPMYF 252 (254)
Q Consensus 248 Np~y~ 252 (254)
-..||
T Consensus 152 ~~~~f 156 (156)
T TIGR02250 152 PYNYF 156 (156)
T ss_pred CcccC
Confidence 54443
No 134
>PLN02887 hydrolase family protein
Probab=98.16 E-value=6.8e-06 Score=80.68 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
..+.|+|||||||+++. ...-+...+.+++|+++|++++++|||+ .....
T Consensus 307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~----~~~i~ 356 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKA----RPAVI 356 (580)
T ss_pred CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCC----HHHHH
Confidence 46789999999999762 2356778899999999999999999999 66667
Q ss_pred HHHHhCCCC
Q 025360 180 DNLHNQGFV 188 (254)
Q Consensus 180 ~~L~~~G~~ 188 (254)
..++++|+.
T Consensus 357 ~~l~~L~l~ 365 (580)
T PLN02887 357 DILKMVDLA 365 (580)
T ss_pred HHHHHhCcc
Confidence 777777765
No 135
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.15 E-value=1.9e-05 Score=67.89 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCCCceEEEecCCccccchh-hhhhhccCCC--------CCChHHHHHHHHh-------------------CCCCCchHH
Q 025360 98 GDGMDAWILDVDDTCISNVY-YYKGKRYGCD--------PYDPAGFRAWALK-------------------GGCPAIPGV 149 (254)
Q Consensus 98 ~~~~~avIfDIDgTll~~~~-~~~~~~~g~~--------~~~~~~~~~~~~~-------------------~~~~~~pg~ 149 (254)
+..+-.++||.|.|++|-.. -..-.-.+.. .|...-|++++.. ...|..||+
T Consensus 10 ~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgm 89 (256)
T KOG3120|consen 10 SSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGM 89 (256)
T ss_pred cCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccH
Confidence 34567799999999997431 1111111211 1222347777652 367899999
Q ss_pred HHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCCCCC--------------cEEEecCCC----CCCCCcccHH
Q 025360 150 LVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFVGYE--------------RLIMRTAAD----KGKNAVTYKS 210 (254)
Q Consensus 150 ~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--------------~lilr~~~~----~~kp~~~yK~ 210 (254)
+++++.+++.|. .+++||.-. .-..+.||+.+|+...| .|.+++-.. ...|.-.-|-
T Consensus 90 v~lik~~ak~g~~eliIVSDaN----sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg 165 (256)
T KOG3120|consen 90 VRLIKSAAKLGCFELIIVSDAN----SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKG 165 (256)
T ss_pred HHHHHHHHhCCCceEEEEecCc----hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhh
Confidence 999999999995 999999988 67788999999997533 244444322 1223323333
Q ss_pred HHHHHH----HHcC--CcEEEEEcCCccccc
Q 025360 211 EIRKQL----LEEG--YRIWGNIGDQWSDLQ 235 (254)
Q Consensus 211 ~~r~~l----~~~G--y~i~~~IGDq~sDi~ 235 (254)
.+..++ .+.| |+..+||||.-+|+=
T Consensus 166 ~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~C 196 (256)
T KOG3120|consen 166 LVLDELVASQLKDGVRYERLIYVGDGANDFC 196 (256)
T ss_pred HHHHHHHHHHhhcCCceeeEEEEcCCCCCcC
Confidence 333333 3344 447999999999983
No 136
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.4e-05 Score=72.19 Aligned_cols=125 Identities=21% Similarity=0.187 Sum_probs=88.9
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhC-CCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG-GCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQVT 178 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T 178 (254)
.-.+|-|||+|+..+.-- .-....|..|..+. ...++||+..+|+.|.+.| ..++++||.+ ...-...
T Consensus 161 ~igiISDiDDTV~~T~V~---------~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSP-w~~f~~L 230 (373)
T COG4850 161 GIGIISDIDDTVKVTGVT---------EGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSP-WQLFPTL 230 (373)
T ss_pred ceeeeeccccceEecccc---------cchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCCh-hHhHHHH
Confidence 345899999999987410 01135677887765 4689999999999999999 8999999999 8877777
Q ss_pred HHHHHhCCCCCCCcEEEecCCC---C-CCCCccc-HHHHHHHHHHcCCcEEEEEcCCc-ccccc
Q 025360 179 RDNLHNQGFVGYERLIMRTAAD---K-GKNAVTY-KSEIRKQLLEEGYRIWGNIGDQW-SDLQG 236 (254)
Q Consensus 179 ~~~L~~~G~~~~~~lilr~~~~---~-~kp~~~y-K~~~r~~l~~~Gy~i~~~IGDq~-sDi~g 236 (254)
.+.+.+.+|| +..++++..+. . ..+...- +..+|..+...+-.-++.|||+= .|.+.
T Consensus 231 ~efi~~~~~P-~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 231 QEFITNRNFP-YGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHhcCCCC-CCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence 8888888998 66777775431 0 0111112 34556567776667778899974 57654
No 137
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.11 E-value=2.9e-06 Score=71.46 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=62.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.++++.|+++|+++.++||.. +..+....+.+|+.. ..+..... +||.+ | ...+.++..+.
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~----~~~a~~~~~~lgi~~--~~v~a~~~--~kP~~--k-~~~~~i~~l~~ 193 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN----ESTASAIAKQLGIFD--SIVFARVI--GKPEP--K-IFLRIIKELQV 193 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE----HHHHHHHHHHTTSCS--EEEEESHE--TTTHH--H-HHHHHHHHHTC
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc----ccccccccccccccc--cccccccc--ccccc--h-hHHHHHHHHhc
Confidence 46889999999999999999999999988 778888889999953 22222211 34422 2 12233333332
Q ss_pred --cEEEEEcCCcccccccc
Q 025360 222 --RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 --~i~~~IGDq~sDi~ga~ 238 (254)
..|++|||+.+|+.+++
T Consensus 194 ~~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 194 KPGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp TGGGEEEEESSGGHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHH
Confidence 37999999999998876
No 138
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.06 E-value=3e-05 Score=68.72 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=84.5
Q ss_pred CCceEEEecCCccccchhhhhh-----hccC------CCCC--ChHHHHHHH----HhCCCC-CchHHHHHHHHHHHCCC
Q 025360 100 GMDAWILDVDDTCISNVYYYKG-----KRYG------CDPY--DPAGFRAWA----LKGGCP-AIPGVLVLFNKLIESGL 161 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~-----~~~g------~~~~--~~~~~~~~~----~~~~~~-~~pg~~ell~~L~~~G~ 161 (254)
...-||||||+||+-...+... ..++ .... -...+.+|+ ...... .=+.+.++++.|+++|+
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 4556999999999965422111 0011 1111 134566776 344443 44788999999999999
Q ss_pred eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--------CCCCCCccc-----------H-HHHHHHHHHcCC
Q 025360 162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--------DKGKNAVTY-----------K-SEIRKQLLEEGY 221 (254)
Q Consensus 162 ~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--------~~~kp~~~y-----------K-~~~r~~l~~~Gy 221 (254)
+++-+|.|. +..+..|.+.|+++|+. +..--++.++ ......+.| | ..+..-|...|+
T Consensus 99 ~v~alT~~~-~~~~~~t~~~Lk~~gi~-fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~ 176 (252)
T PF11019_consen 99 PVIALTARG-PNMEDWTLRELKSLGID-FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQ 176 (252)
T ss_pred cEEEEcCCC-hhhHHHHHHHHHHCCCC-ccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCC
Confidence 999999999 99999999999999997 4322111111 001111222 2 334444566675
Q ss_pred cE--EEEEcCCcccccc
Q 025360 222 RI--WGNIGDQWSDLQG 236 (254)
Q Consensus 222 ~i--~~~IGDq~sDi~g 236 (254)
.+ +++|+|+...+..
T Consensus 177 ~pk~IIfIDD~~~nl~s 193 (252)
T PF11019_consen 177 SPKKIIFIDDNKENLKS 193 (252)
T ss_pred CCCeEEEEeCCHHHHHH
Confidence 54 9999999876543
No 139
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.03 E-value=1.1e-05 Score=73.66 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=48.4
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCccccHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~----G~~i~~vTgR~~e~~r~~T 178 (254)
+++||+||||.++ ..++|++.++++.|+++ |+++.|+||.. ...+...
T Consensus 2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~-g~s~~~~ 53 (321)
T TIGR01456 2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGG-GFSERAR 53 (321)
T ss_pred EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCC-CCCHHHH
Confidence 6999999999986 34599999999999998 99999999998 5555555
Q ss_pred HHHH-HhCCCC
Q 025360 179 RDNL-HNQGFV 188 (254)
Q Consensus 179 ~~~L-~~~G~~ 188 (254)
.+.| +++|++
T Consensus 54 ~~~l~~~lG~~ 64 (321)
T TIGR01456 54 AEEISSLLGVD 64 (321)
T ss_pred HHHHHHHcCCC
Confidence 5555 888986
No 140
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.02 E-value=1.8e-05 Score=66.96 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=42.5
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
++||+||||+++. ..++-+.+.+.+++|+++|.+++++|||+ .......+.
T Consensus 2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~----~~~~~~~~~ 52 (204)
T TIGR01484 2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRS----LAEIKELLK 52 (204)
T ss_pred EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHHHHH
Confidence 7899999999752 13466889999999999999999999999 555556665
Q ss_pred h
Q 025360 184 N 184 (254)
Q Consensus 184 ~ 184 (254)
.
T Consensus 53 ~ 53 (204)
T TIGR01484 53 Q 53 (204)
T ss_pred h
Confidence 5
No 141
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.01 E-value=2.5e-05 Score=76.46 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~ 177 (254)
.+...+.+..||+.+-.. .-.+++.||+.+++++|+++| ++++++||.+ +..
T Consensus 362 ~g~~~~~v~~~~~~~g~i-----------------------~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~----~~~ 414 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVI-----------------------ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDN----RSA 414 (556)
T ss_pred CCcEEEEEEECCEEEEEE-----------------------EecccchHhHHHHHHHHHHcCCCeEEEEeCCC----HHH
Confidence 456678888888666442 114789999999999999999 9999999999 788
Q ss_pred HHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCccccccccc
Q 025360 178 TRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 178 T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~ 239 (254)
+...++++|++.++.-+ . +.-|....+.+...| ..+++|||+.+|+.+++.
T Consensus 415 a~~i~~~lgi~~~f~~~----~------p~~K~~~v~~l~~~~-~~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 415 AEAVAAELGIDEVHAEL----L------PEDKLAIVKELQEEG-GVVAMVGDGINDAPALAA 465 (556)
T ss_pred HHHHHHHhCCCeeeccC----C------HHHHHHHHHHHHHcC-CEEEEEECChhHHHHHhh
Confidence 88899999997543311 0 112344455555545 489999999999999874
No 142
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.93 E-value=8.9e-05 Score=63.79 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHh----CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCC-
Q 025360 128 PYDPAGFRAWALK----GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKG- 202 (254)
Q Consensus 128 ~~~~~~~~~~~~~----~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~- 202 (254)
.++..++++++.. ...+|-+-..++|-.|+.++ ..+.||-+ +...++.|+++|+.+.|+-+..-+...+
T Consensus 80 ~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~----k~HA~r~Lk~LGieDcFegii~~e~~np~ 153 (244)
T KOG3109|consen 80 IFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY----KVHAIRILKKLGIEDCFEGIICFETLNPI 153 (244)
T ss_pred cCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc----HHHHHHHHHHhChHHhccceeEeeccCCC
Confidence 4567778888764 34677778888988888877 67789999 8899999999999886554443322221
Q ss_pred -CCC--cccHHHHHHHHHHcCC---cEEEEEcCCcccccccc-cCCcEEEe
Q 025360 203 -KNA--VTYKSEIRKQLLEEGY---RIWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 203 -kp~--~~yK~~~r~~l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
++. .+-.++.-.++...|. +-+..++|+.+-|++|+ .|.+++.+
T Consensus 154 ~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv 204 (244)
T KOG3109|consen 154 EKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLV 204 (244)
T ss_pred CCceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEE
Confidence 111 1122333344555554 46999999999999998 67777654
No 143
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.92 E-value=2.2e-05 Score=76.56 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G 220 (254)
.+++.||+.+.++.|+++|+ +++++||++ +..++..++++|++.++.-.. | .-|....+++...+
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~----~~~a~~i~~~lgi~~~f~~~~--------p--~~K~~~i~~l~~~~ 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR----RAVAERVARELGIDEVHAELL--------P--EDKLEIVKELREKY 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC----HHHHHHHHHHcCChhhhhccC--------c--HHHHHHHHHHHhcC
Confidence 57899999999999999999 999999999 788889999999976543111 1 12444555566555
Q ss_pred CcEEEEEcCCccccccccc
Q 025360 221 YRIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 221 y~i~~~IGDq~sDi~ga~~ 239 (254)
+.+++|||+.+|+.+++.
T Consensus 426 -~~v~~vGDg~nD~~al~~ 443 (536)
T TIGR01512 426 -GPVAMVGDGINDAPALAA 443 (536)
T ss_pred -CEEEEEeCCHHHHHHHHh
Confidence 689999999999998873
No 144
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.92 E-value=3.2e-05 Score=76.62 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=48.7
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
-.++.|++||||||+++. ....+.+.+.++.|+++|++++++|||+ ....
T Consensus 414 ~~~KLIfsDLDGTLLd~d--------------------------~~i~~~t~eAL~~L~ekGI~~VIATGRs----~~~i 463 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPL--------------------------TYSYSTALDALRLLKDKELPLVFCSAKT----MGEQ 463 (694)
T ss_pred ceeeEEEEECcCCCcCCC--------------------------CccCHHHHHHHHHHHHcCCeEEEEeCCC----HHHH
Confidence 456889999999999863 1233467889999999999999999999 6666
Q ss_pred HHHHHhCCCCC
Q 025360 179 RDNLHNQGFVG 189 (254)
Q Consensus 179 ~~~L~~~G~~~ 189 (254)
...++.+|+..
T Consensus 464 ~~l~~~Lgl~~ 474 (694)
T PRK14502 464 DLYRNELGIKD 474 (694)
T ss_pred HHHHHHcCCCC
Confidence 67778888753
No 145
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=97.89 E-value=9.7e-05 Score=72.06 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=81.7
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHH-hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWAL-KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
-+.||-|||||+.-+.- .| ..+. -|++=.--|+.+|+...+++||+++|+|+|. -.|...|.
T Consensus 530 ~kIVISDIDGTITKSDv------LG----------h~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARa-IgQA~~TR 592 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDV------LG----------HVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARA-IGQADSTR 592 (738)
T ss_pred CcEEEecCCCceEhhhh------hh----------hhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhh-hhhhHHHH
Confidence 35688899999997531 11 1111 1344456799999999999999999999999 88888887
Q ss_pred HHHHhC---CCCCC-CcEEEecCCC---------CCCCCcccHHHHHHHHHHc---CCc-EEEEEcCCcccccccc
Q 025360 180 DNLHNQ---GFVGY-ERLIMRTAAD---------KGKNAVTYKSEIRKQLLEE---GYR-IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 180 ~~L~~~---G~~~~-~~lilr~~~~---------~~kp~~~yK~~~r~~l~~~---Gy~-i~~~IGDq~sDi~ga~ 238 (254)
..|+.. |..-. ..++++++.. .+|| ..||-+....|..+ .++ -.+-+|.+.+|.....
T Consensus 593 ~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkP-e~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~ 667 (738)
T KOG2116|consen 593 QYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKP-EVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYR 667 (738)
T ss_pred HHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCc-hhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeee
Confidence 666544 54321 3578887652 1343 46776655555542 233 3677999999998776
No 146
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.89 E-value=2.7e-05 Score=69.81 Aligned_cols=97 Identities=29% Similarity=0.404 Sum_probs=71.5
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
++-+.+|||.||.|.. ...++||+.+.++.|+++|.+++|+||.+ .+.|+..
T Consensus 20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNS-tksr~~y 71 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNS-TKSREQY 71 (306)
T ss_pred hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCC-cchHHHH
Confidence 5578999999995543 26699999999999999999999999999 8889999
Q ss_pred HHHHHhCCCCCC-CcEEEecCCC------CCCC--Cccc---HHHHHHHHHHcCCcE
Q 025360 179 RDNLHNQGFVGY-ERLIMRTAAD------KGKN--AVTY---KSEIRKQLLEEGYRI 223 (254)
Q Consensus 179 ~~~L~~~G~~~~-~~lilr~~~~------~~kp--~~~y---K~~~r~~l~~~Gy~i 223 (254)
.+.++++|+... .+-++.+... +.+| ..+| -+.+++.|++.|++.
T Consensus 72 ~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~ 128 (306)
T KOG2882|consen 72 MKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEY 128 (306)
T ss_pred HHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCcee
Confidence 999999999742 1222222110 1111 1233 377889999999654
No 147
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.84 E-value=0.00015 Score=60.53 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=68.9
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHH-HHHH-h-CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFR-AWAL-K-GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQV 177 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~-~~~~-~-~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~ 177 (254)
++.||||+|.||-.-.-+.. ...||....=. .-++ . .....+|++.++|+.|+++|++|+++|... + -+.
T Consensus 3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~-~--P~~ 75 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTD-E--PDW 75 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S----HHH
T ss_pred CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCC-C--hHH
Confidence 68999999999987542221 11122100000 0000 1 235789999999999999999999999655 2 367
Q ss_pred HHHHHHhCCCC----------CCCcEEEecCCCCCCCCcccHHHHHHHHH-HcC--CcEEEEEcCCcccccccc-cCCcE
Q 025360 178 TRDNLHNQGFV----------GYERLIMRTAADKGKNAVTYKSEIRKQLL-EEG--YRIWGNIGDQWSDLQGEC-TGNRT 243 (254)
Q Consensus 178 T~~~L~~~G~~----------~~~~lilr~~~~~~kp~~~yK~~~r~~l~-~~G--y~i~~~IGDq~sDi~ga~-~g~r~ 243 (254)
+.+.|+.++++ .+++..-= ..+ -|..-+++|. +.| |...+.++|...-+.... .|..+
T Consensus 76 A~~~L~~l~i~~~~~~~~~~~~~F~~~eI---~~g-----sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~ 147 (169)
T PF12689_consen 76 ARELLKLLEIDDADGDGVPLIEYFDYLEI---YPG-----SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTC 147 (169)
T ss_dssp HHHHHHHTT-C----------CCECEEEE---SSS------HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EE
T ss_pred HHHHHHhcCCCccccccccchhhcchhhe---ecC-----chHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEE
Confidence 77889999998 33322110 111 1222222222 333 567999999876554444 79888
Q ss_pred EEeCC
Q 025360 244 FKLPN 248 (254)
Q Consensus 244 fklPN 248 (254)
+.+||
T Consensus 148 v~v~~ 152 (169)
T PF12689_consen 148 VLVPD 152 (169)
T ss_dssp EE-SS
T ss_pred EEeCC
Confidence 88888
No 148
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.84 E-value=4.5e-05 Score=67.94 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=47.3
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIE-SGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~-~G~~i~~vTgR~~e~~r~~T~ 179 (254)
...|+||+||||++..+ + ......-|.+.+.|+.|.+ .|+.++++|||+ .....
T Consensus 14 ~~li~~D~DGTLl~~~~------------~---------p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~----~~~~~ 68 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKP------------H---------PDQVVVPDNILQGLQLLATANDGALALISGRS----MVELD 68 (266)
T ss_pred CEEEEEecCCCCCCCCC------------C---------cccccCCHHHHHHHHHHHhCCCCcEEEEeCCC----HHHHH
Confidence 56899999999997421 0 0124567899999999998 799999999999 66666
Q ss_pred HHHHhCCC
Q 025360 180 DNLHNQGF 187 (254)
Q Consensus 180 ~~L~~~G~ 187 (254)
+++...++
T Consensus 69 ~~~~~~~~ 76 (266)
T PRK10187 69 ALAKPYRF 76 (266)
T ss_pred HhcCcccc
Confidence 67765553
No 149
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.82 E-value=4.5e-05 Score=66.86 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=47.5
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
..|+.|+|||||+.. .+..+..|...++++.++++|+.++++|||+ .......
T Consensus 2 ~li~tDlDGTLl~~~-----------------------~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~----~~~~~~~ 54 (249)
T TIGR01485 2 LLLVSDLDNTLVDHT-----------------------DGDNQALLRLNALLEDHRGEDSLLVYSTGRS----PHSYKEL 54 (249)
T ss_pred eEEEEcCCCcCcCCC-----------------------CCChHHHHHHHHHHHHhhccCceEEEEcCCC----HHHHHHH
Confidence 368889999999731 0124466888999999999999999999999 6666666
Q ss_pred HHhCCCCC
Q 025360 182 LHNQGFVG 189 (254)
Q Consensus 182 L~~~G~~~ 189 (254)
+++++++.
T Consensus 55 ~~~~~~~~ 62 (249)
T TIGR01485 55 QKQKPLLT 62 (249)
T ss_pred HhcCCCCC
Confidence 67677753
No 150
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.81 E-value=0.00016 Score=71.02 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=62.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.++++.|+++|++++++||.. +..++..++++|++ + .... +| .-|....+.+...+
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~----~~~a~~ia~~lgi~-~----~~~~----~p--~~K~~~v~~l~~~~- 466 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDN----RKTAKAVAKELGIN-V----RAEV----LP--DDKAALIKELQEKG- 466 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCC----HHHHHHHHHHcCCc-E----EccC----Ch--HHHHHHHHHHHHcC-
Confidence 47799999999999999999999999999 77888888999996 2 1111 11 22444445555544
Q ss_pred cEEEEEcCCccccccccc
Q 025360 222 RIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~~ 239 (254)
+.+++|||+.+|+.+.+.
T Consensus 467 ~~v~~VGDg~nD~~al~~ 484 (562)
T TIGR01511 467 RVVAMVGDGINDAPALAQ 484 (562)
T ss_pred CEEEEEeCCCccHHHHhh
Confidence 679999999999988873
No 151
>PLN02423 phosphomannomutase
Probab=97.72 E-value=8.2e-05 Score=65.45 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCceEE-EecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 100 GMDAWI-LDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 100 ~~~avI-fDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
++++++ |||||||++.. ...-|...+.+++|+++ +.++++|||.
T Consensus 5 ~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred ccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 466666 99999999753 23457889999999977 9999999998
No 152
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=97.68 E-value=0.00027 Score=60.50 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
+.+.+++||-|||-.. ..++||+.|.++.|+..+.+|=|+||-+ .+.+....
T Consensus 6 ~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNtt-k~Sk~~l~ 57 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTT-KESKRNLH 57 (262)
T ss_pred ccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCc-chhHHHHH
Confidence 4678999999998764 3399999999999999999999999999 77788888
Q ss_pred HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc-ccccccc
Q 025360 180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW-SDLQGEC 238 (254)
Q Consensus 180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~-sDi~ga~ 238 (254)
+.|.++||..-.+-+.++ ....+.-+++.++|+-+.|.|.. .|+.|-.
T Consensus 58 ~rL~rlgf~v~eeei~ts-----------l~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 58 ERLQRLGFDVSEEEIFTS-----------LPAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred HHHHHhCCCccHHHhcCc-----------cHHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 899999997422222222 23456677888999888887765 6777655
No 153
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.65 E-value=0.00027 Score=63.12 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
..+..|+||+|+||+... .....+-|.+.+-++.|++.|.-+++=|... ++..
T Consensus 120 ~~phVIVfDlD~TLItd~-----------------------~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~----~eHV 172 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDE-----------------------GDVRIRDPAVYDSLRELKEQGCVLVLWSYGN----REHV 172 (297)
T ss_pred CCCcEEEEECCCcccccC-----------------------CccccCChHHHHHHHHHHHcCCEEEEecCCC----HHHH
Confidence 457799999999999653 0123466889999999999999999999988 8888
Q ss_pred HHHHHhCCCCCCCcEEEecC
Q 025360 179 RDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 179 ~~~L~~~G~~~~~~lilr~~ 198 (254)
...|++.|++++|++++++.
T Consensus 173 ~~sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 173 RHSLKELKLEGYFDIIICGG 192 (297)
T ss_pred HHHHHHhCCccccEEEEeCC
Confidence 89999999999999988764
No 154
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.64 E-value=1.4e-05 Score=69.81 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=61.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEE--EecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLI--MRTAA-DKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~li--lr~~~-~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
-++++.++++.|+++|.++ ++||++ .... ...+...|...++..+ ...+. ..+||.+. .....++..|.
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d-~~~~---~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~---~~~~~~~~~~~ 210 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPD-RGIN---QHGIYRYGAGYYAELIKQLGGKVIYSGKPYPA---IFHKALKECSN 210 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCC-Eecc---CCCceEecccHHHHHHHHhCCcEecCCCCCHH---HHHHHHHHcCC
Confidence 4789999999999999997 889998 4332 2345555554444332 23322 35676543 33334445442
Q ss_pred ---cEEEEEcCC-cccccccc-cCCcEEEe
Q 025360 222 ---RIWGNIGDQ-WSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 222 ---~i~~~IGDq-~sDi~ga~-~g~r~fkl 246 (254)
..+++|||+ .+|+.+|+ +|.+++.+
T Consensus 211 ~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 211 IPKNRMLMVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred CCcccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 359999999 59999998 68877654
No 155
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.63 E-value=9.2e-05 Score=64.24 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=40.4
Q ss_pred EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH 183 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~ 183 (254)
|++|+||||+++.+. ++...++++ ++++|+.++++|||+ .......+.
T Consensus 2 i~~DlDgTLl~~~~~---------------------------~~~~~~~~~-~~~~gi~~viaTGR~----~~~v~~~~~ 49 (236)
T TIGR02471 2 IITDLDNTLLGDDEG---------------------------LASFVELLR-GSGDAVGFGIATGRS----VESAKSRYA 49 (236)
T ss_pred eEEeccccccCCHHH---------------------------HHHHHHHHH-hcCCCceEEEEeCCC----HHHHHHHHH
Confidence 789999999975311 111225666 689999999999999 777888888
Q ss_pred hCCCC
Q 025360 184 NQGFV 188 (254)
Q Consensus 184 ~~G~~ 188 (254)
.+++.
T Consensus 50 ~l~l~ 54 (236)
T TIGR02471 50 KLNLP 54 (236)
T ss_pred hCCCC
Confidence 88875
No 156
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.61 E-value=0.0002 Score=73.88 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCC----------------CC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKG----------------KN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~----------------kp 204 (254)
.+++.|++.+.++.|+++|+++.++||.. ...+....++.|+...+...+.+.+ +.. ..
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~----~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~ 601 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDS----QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARA 601 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEEC
Confidence 46899999999999999999999999999 7777778889999754433333322 110 12
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCccccccccc
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~ 239 (254)
.+..|..+-+.+++.| ..++++||..+|..+.+.
T Consensus 602 ~P~~K~~iv~~lq~~g-~~v~mvGDGvND~pAl~~ 635 (884)
T TIGR01522 602 SPEHKMKIVKALQKRG-DVVAMTGDGVNDAPALKL 635 (884)
T ss_pred CHHHHHHHHHHHHHCC-CEEEEECCCcccHHHHHh
Confidence 2456777777888877 578999999999988773
No 157
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.50 E-value=0.00046 Score=64.77 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=85.3
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
..+.||+|||||+.-+... .|.+ -..++.=---|+..|+.....+||+|.++|+|+ -.+...|.
T Consensus 374 n~kiVVsDiDGTITkSD~~--Ghv~-------------~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~-~Gqa~sTr 437 (580)
T COG5083 374 NKKIVVSDIDGTITKSDAL--GHVK-------------QMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRS-YGQADSTR 437 (580)
T ss_pred CCcEEEEecCCcEEehhhH--HHHH-------------HHhccchhhcchhhhhhhhccCceEEEEEeccc-ccchhhhh
Confidence 4677999999999976421 0000 012334345678889999999999999999999 88888887
Q ss_pred HHHH---hCCCCCCC-cEEEecCCCC--------CCCCcccHHHHHHHHHHcCCcE---EEEEcCCcccccccc
Q 025360 180 DNLH---NQGFVGYE-RLIMRTAADK--------GKNAVTYKSEIRKQLLEEGYRI---WGNIGDQWSDLQGEC 238 (254)
Q Consensus 180 ~~L~---~~G~~~~~-~lilr~~~~~--------~kp~~~yK~~~r~~l~~~Gy~i---~~~IGDq~sDi~ga~ 238 (254)
.-|+ +.|+.-|+ .++|.++..- .+....+|.+..+.|...+... .+=+|...+|+.+..
T Consensus 438 sylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNriTDvisY~ 511 (580)
T COG5083 438 SYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISYS 511 (580)
T ss_pred hHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccchhheeec
Confidence 6554 56776554 5777765411 1123578888888888776543 446899999998876
No 158
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.48 E-value=0.00015 Score=59.07 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=61.7
Q ss_pred ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~ 181 (254)
+.+|||+||||+++...-.. +.+...- .-........-||+.+||+.|.+. +.|++.|+.. +.......+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~-~~ya~~v~~~ 71 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSAS-EEYAEPVLDA 71 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS--HHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHHh-ceEEEEEeeh-hhhhhHHHHh
Confidence 47999999999987532110 0000000 000001234679999999999555 9999999999 6555555555
Q ss_pred HHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccc
Q 025360 182 LHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQG 236 (254)
Q Consensus 182 L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~g 236 (254)
|...+-. +...+.+......+. ...| .|...|. .-++.|+|+..-+..
T Consensus 72 ldp~~~~-~~~~~~r~~~~~~~~-~~~K-----dL~~l~~~~~~vvivDD~~~~~~~ 121 (159)
T PF03031_consen 72 LDPNGKL-FSRRLYRDDCTFDKG-SYIK-----DLSKLGRDLDNVVIVDDSPRKWAL 121 (159)
T ss_dssp HTTTTSS-EEEEEEGGGSEEETT-EEE-------GGGSSS-GGGEEEEES-GGGGTT
T ss_pred hhhhccc-ccccccccccccccc-cccc-----chHHHhhccccEEEEeCCHHHeec
Confidence 5543221 334444443211111 1122 3555554 558889999875543
No 159
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0017 Score=54.70 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=57.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC----CCC---C-CcEEEecCCCC---CCCC---cc
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG----FVG---Y-ERLIMRTAADK---GKNA---VT 207 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G----~~~---~-~~lilr~~~~~---~kp~---~~ 207 (254)
+...-||..++++.+++++++++++|+.. + ......|+..+ +.. + ....+..++.. .+.+ -.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm-~---~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~ 146 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGM-D---PFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGH 146 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCC-c---hHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCC
Confidence 46778999999999999999999999998 3 33333444333 321 1 11122211100 0001 12
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCcccccccccCCc
Q 025360 208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNR 242 (254)
Q Consensus 208 yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r 242 (254)
-|+..-.++.+ .+.-+.+.||+.+|+.+|.....
T Consensus 147 dK~~vI~~l~e-~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 147 DKSSVIHELSE-PNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred CcchhHHHhhc-CCceEEEecCCcccccHhhhhhh
Confidence 34444444543 45669999999999999984333
No 160
>PLN03017 trehalose-phosphatase
Probab=97.45 E-value=0.00052 Score=63.80 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=47.0
Q ss_pred HHHHHHhh-hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEE
Q 025360 88 LCYVNEVV-LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166 (254)
Q Consensus 88 ~~y~~~~~-~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~v 166 (254)
...++++. ....++..+++|+||||+.-.. . ...+.+-+++.+.|+.|. +|+.++++
T Consensus 97 l~~~~~~~~~~~~k~~llflD~DGTL~Piv~-----------~----------p~~a~i~~~~~~aL~~La-~~~~vaIv 154 (366)
T PLN03017 97 LEMFEQIMEASRGKQIVMFLDYDGTLSPIVD-----------D----------PDKAFMSSKMRRTVKKLA-KCFPTAIV 154 (366)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCCcCcCCcC-----------C----------cccccCCHHHHHHHHHHh-cCCcEEEE
Confidence 33334443 2345567888899999993210 0 013467899999999999 78999999
Q ss_pred eCCCccccHHHHHHHH
Q 025360 167 TGRDEETFGQVTRDNL 182 (254)
Q Consensus 167 TgR~~e~~r~~T~~~L 182 (254)
|||+ +....+++
T Consensus 155 SGR~----~~~l~~~~ 166 (366)
T PLN03017 155 TGRC----IDKVYNFV 166 (366)
T ss_pred eCCC----HHHHHHhh
Confidence 9999 55555443
No 161
>PLN02151 trehalose-phosphatase
Probab=97.37 E-value=0.00064 Score=62.98 Aligned_cols=62 Identities=19% Similarity=0.078 Sum_probs=46.8
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
...++.++++|+||||+.-.+ + ...+.+-|++.+.|+.|. +++.++++|||+ ++
T Consensus 94 ~~~~~~ll~lDyDGTL~PIv~------------~---------P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~----~~ 147 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSPIVD------------D---------PDRAFMSKKMRNTVRKLA-KCFPTAIVSGRC----RE 147 (354)
T ss_pred hcCCceEEEEecCccCCCCCC------------C---------cccccCCHHHHHHHHHHh-cCCCEEEEECCC----HH
Confidence 345678899999999995321 0 124578899999999999 557999999999 77
Q ss_pred HHHHHHHh
Q 025360 177 VTRDNLHN 184 (254)
Q Consensus 177 ~T~~~L~~ 184 (254)
...+++.-
T Consensus 148 ~l~~~~~~ 155 (354)
T PLN02151 148 KVSSFVKL 155 (354)
T ss_pred HHHHHcCC
Confidence 77766643
No 162
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.28 E-value=0.0013 Score=52.50 Aligned_cols=88 Identities=15% Similarity=0.087 Sum_probs=61.1
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG--GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
+|+||.|||+-|...... + ..||..-+=+.-.+.+ +...+|.+.++++.++..|+-+..+|=+. .....+
T Consensus 2 ~i~~d~d~t~wdhh~iSs---l-~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~----~~kA~~ 73 (164)
T COG4996 2 AIVFDADKTLWDHHNISS---L-EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF----EDKAIK 73 (164)
T ss_pred cEEEeCCCcccccccchh---c-CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc----hHHHHH
Confidence 799999999998531110 0 0122110001111111 34689999999999999999999999888 677788
Q ss_pred HHHhCCCCCCCcEEEecC
Q 025360 181 NLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 181 ~L~~~G~~~~~~lilr~~ 198 (254)
-|+.+|+..|++.++-..
T Consensus 74 aLral~~~~yFhy~VieP 91 (164)
T COG4996 74 ALRALDLLQYFHYIVIEP 91 (164)
T ss_pred HHHHhchhhhEEEEEecC
Confidence 999999999998777654
No 163
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.17 E-value=0.00077 Score=68.14 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~ 177 (254)
..++.++||+||||++.... .....+-+.+.+.|+.|.++ |..++++|||+ +..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~----~~~ 544 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRD----RDT 544 (726)
T ss_pred ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC----HHH
Confidence 45789999999999985310 01245678999999999995 99999999999 666
Q ss_pred HHHHHHhCCC
Q 025360 178 TRDNLHNQGF 187 (254)
Q Consensus 178 T~~~L~~~G~ 187 (254)
.++++...++
T Consensus 545 l~~~~~~~~l 554 (726)
T PRK14501 545 LERWFGDLPI 554 (726)
T ss_pred HHHHhCCCCe
Confidence 6777765543
No 164
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.13 E-value=0.0015 Score=66.18 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.+.++.|+++|++++++||.. +..+....+++|+..+.. . . +.-|...-+++++.
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~----~~~a~~ia~~lgi~~~~~------~---~--p~~K~~~v~~l~~~-- 628 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN----PRAAAAIAGELGIDFRAG------L---L--PEDKVKAVTELNQH-- 628 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCeecC------C---C--HHHHHHHHHHHhcC--
Confidence 46899999999999999999999999999 788888999999963221 0 1 12355555556543
Q ss_pred cEEEEEcCCccccccccc
Q 025360 222 RIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~~ 239 (254)
..+++|||..+|..+...
T Consensus 629 ~~v~mvGDgiNDapAl~~ 646 (741)
T PRK11033 629 APLAMVGDGINDAPAMKA 646 (741)
T ss_pred CCEEEEECCHHhHHHHHh
Confidence 369999999999887763
No 165
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.07 E-value=0.00027 Score=62.52 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-C---CCCCCcccHHHHHHHHHHcC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-D---KGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~---~~kp~~~yK~~~r~~l~~~G 220 (254)
.++++.+.++.|++.|.+++++||++ .. .....+...|...++..+....+ . .+||.+ ......++..|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~-~~---~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p---~~~~~~~~~~~ 193 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKG-RY---YKRKDGLALDVGPFVTALEYATDTKATVVGKPSK---TFFLEALRATG 193 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCC-CC---CcCCCCCCCCchHHHHHHHHHhCCCceeecCCCH---HHHHHHHHHhC
Confidence 46888899999999999999999998 32 22233444455444433322222 1 246644 23333445555
Q ss_pred C--cEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360 221 Y--RIWGNIGDQW-SDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 221 y--~i~~~IGDq~-sDi~ga~-~g~r~fklPN 248 (254)
. +.+++|||+. +|+.+|+ +|.+++.+..
T Consensus 194 ~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 194 CEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRT 225 (257)
T ss_pred CChhhEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence 4 4599999996 9999998 7888887743
No 166
>PLN02382 probable sucrose-phosphatase
Probab=97.06 E-value=0.0019 Score=61.19 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=45.2
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
.+..+..|+.|||||||++. + ......+....+++.+.++|+.++++|||+ ..
T Consensus 5 ~~~~~~lI~sDLDGTLL~~~--------~---------------~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~----~~ 57 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDHH--------D---------------PENLSLLRFNALWEAEYRHDSLLVFSTGRS----PT 57 (413)
T ss_pred cCCCCEEEEEcCCCcCcCCC--------C---------------ccchhHHHHHHHHHHhhcCCeeEEEEcCCC----HH
Confidence 34456788889999999762 0 011122334455578899999999999999 66
Q ss_pred HHHHHHHhCCCCC
Q 025360 177 VTRDNLHNQGFVG 189 (254)
Q Consensus 177 ~T~~~L~~~G~~~ 189 (254)
.....++..++..
T Consensus 58 ~~~~l~~~~~l~~ 70 (413)
T PLN02382 58 LYKELRKEKPLLT 70 (413)
T ss_pred HHHHHHHhCCCCC
Confidence 6666666676653
No 167
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0017 Score=65.32 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=63.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++-|++.+.++.|+++|++++++||-. +...+..=+++|++.+..-+ . +.-|..+-+++++.|
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn----~~~A~~iA~~lGId~v~Ael-l---------PedK~~~V~~l~~~g- 599 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDN----RRTAEAIAKELGIDEVRAEL-L---------PEDKAEIVRELQAEG- 599 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcChHhheccC-C---------cHHHHHHHHHHHhcC-
Confidence 57899999999999999999999999988 66677777889997542111 1 234677777888766
Q ss_pred cEEEEEcCCcccccc
Q 025360 222 RIWGNIGDQWSDLQG 236 (254)
Q Consensus 222 ~i~~~IGDq~sDi~g 236 (254)
+.+++|||..||--+
T Consensus 600 ~~VamVGDGINDAPA 614 (713)
T COG2217 600 RKVAMVGDGINDAPA 614 (713)
T ss_pred CEEEEEeCCchhHHH
Confidence 788999999999744
No 168
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0019 Score=57.67 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=51.1
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFG 175 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r 175 (254)
...++.+++||.||||.+-.++ ...+++.++++++|+.|.++ ...++++|||+ .
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~----~ 68 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRS----L 68 (266)
T ss_pred ccccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC----H
Confidence 3456899999999999986421 12578999999999999999 45799999999 6
Q ss_pred HHHHHHHHhCCC
Q 025360 176 QVTRDNLHNQGF 187 (254)
Q Consensus 176 ~~T~~~L~~~G~ 187 (254)
+....++.-.|+
T Consensus 69 ~~l~~~~~v~~i 80 (266)
T COG1877 69 AELERLFGVPGI 80 (266)
T ss_pred HHHHHhcCCCCc
Confidence 666666663333
No 169
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.01 E-value=0.0019 Score=66.39 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.+.++.|++.|++++++||.. +..+...+++.|++.+ + .+.. +..|....+++...|
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~----~~~a~~ia~~lgi~~~---~-~~~~------p~~K~~~i~~l~~~~- 712 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDN----PTTANAIAKEAGIDEV---I-AGVL------PDGKAEAIKRLQSQG- 712 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCCCEE---E-eCCC------HHHHHHHHHHHhhcC-
Confidence 46789999999999999999999999999 6777788899999742 2 1111 123555555565544
Q ss_pred cEEEEEcCCcccccccc
Q 025360 222 RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~ 238 (254)
..+++|||+.+|+.+..
T Consensus 713 ~~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 713 RQVAMVGDGINDAPALA 729 (834)
T ss_pred CEEEEEeCCHHHHHHHH
Confidence 46999999999998876
No 170
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0016 Score=54.00 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=79.3
Q ss_pred eEEEecCCccccch-------hhhhhhccCCC--CC--------ChHHHHHHHHhCCC------CCchHHHHHHHHHHHC
Q 025360 103 AWILDVDDTCISNV-------YYYKGKRYGCD--PY--------DPAGFRAWALKGGC------PAIPGVLVLFNKLIES 159 (254)
Q Consensus 103 avIfDIDgTll~~~-------~~~~~~~~g~~--~~--------~~~~~~~~~~~~~~------~~~pg~~ell~~L~~~ 159 (254)
-+.+|||||+.+.. ++|.+.---.. .| ..+.+.+|++..+. ..-.++...+..+++.
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~ 87 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE 87 (194)
T ss_pred heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 46799999999742 12211100001 12 35678888875433 2334455556666655
Q ss_pred CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc-ccccccc
Q 025360 160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW-SDLQGEC 238 (254)
Q Consensus 160 G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~-sDi~ga~ 238 (254)
.+++++|+|. ......|-.||....++ |+++.+.+-. +| ..++| .+.+-+.+.|+. +-++.++
T Consensus 88 -~~L~~itar~-~dl~~iT~~~l~~q~ih-~~~l~i~g~h--~K-----V~~vr------th~idlf~ed~~~na~~iAk 151 (194)
T COG5663 88 -HRLIYITARK-ADLTRITYAWLFIQNIH-YDHLEIVGLH--HK-----VEAVR------THNIDLFFEDSHDNAGQIAK 151 (194)
T ss_pred -ceeeeeehhh-HHHHHHHHHHHHHhccc-hhhhhhhccc--cc-----chhhH------hhccCccccccCchHHHHHH
Confidence 8999999999 88888899999999998 8887766532 22 11111 234555666765 3444444
Q ss_pred -cCCcEEEeCCC
Q 025360 239 -TGNRTFKLPNP 249 (254)
Q Consensus 239 -~g~r~fklPNp 249 (254)
+|.+++.+-.|
T Consensus 152 ~~~~~vilins~ 163 (194)
T COG5663 152 NAGIPVILINSP 163 (194)
T ss_pred hcCCcEEEecCc
Confidence 67666665443
No 171
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.98 E-value=0.00026 Score=63.26 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe---cC-CCCCCCCcccHHHHHHHHHHc
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR---TA-ADKGKNAVTYKSEIRKQLLEE 219 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr---~~-~~~~kp~~~yK~~~r~~l~~~ 219 (254)
-.++++.++++.|+++|. ++++||++ .... ....+...|...++..+.. .. ...+||.+.. ....++..
T Consensus 143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d-~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~---~~~~~~~~ 215 (279)
T TIGR01452 143 FSYAKLREACAHLREPGC-LFVATNRD-PWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYM---FECITENF 215 (279)
T ss_pred CCHHHHHHHHHHHhcCCC-EEEEeCCC-CCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHH---HHHHHHHh
Confidence 358999999999999997 78999988 3221 1111222344333332221 11 1345765432 23344444
Q ss_pred CC--cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360 220 GY--RIWGNIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 220 Gy--~i~~~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
|. ..+++|||+. +|+.+|+ +|.+++.+
T Consensus 216 ~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 216 SIDPARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred CCChhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 54 4599999995 9999997 78888766
No 172
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.94 E-value=0.0016 Score=56.98 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=38.8
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCC
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRD 170 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~ 170 (254)
++.+++||+||||+...+ + .....+-|++.++|+.|.+. +..++++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~~------------~---------p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP------------D---------PDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcC------------C---------CcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 467899999999997421 0 01356789999999999887 56788999997
No 173
>PLN02580 trehalose-phosphatase
Probab=96.93 E-value=0.0029 Score=59.29 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=48.3
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
...++.+++||.||||..-.+ + -..+.+-|++.+.|+.|.+. ..++|||||+ ++
T Consensus 115 ~~~k~~~LfLDyDGTLaPIv~------------~---------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~----~~ 168 (384)
T PLN02580 115 AKGKKIALFLDYDGTLSPIVD------------D---------PDRALMSDAMRSAVKNVAKY-FPTAIISGRS----RD 168 (384)
T ss_pred hhcCCeEEEEecCCccCCCCC------------C---------cccccCCHHHHHHHHHHhhC-CCEEEEeCCC----HH
Confidence 345678899999999985321 0 12467889999999999998 5899999999 78
Q ss_pred HHHHHHHh
Q 025360 177 VTRDNLHN 184 (254)
Q Consensus 177 ~T~~~L~~ 184 (254)
...+++.-
T Consensus 169 ~L~~~l~~ 176 (384)
T PLN02580 169 KVYELVGL 176 (384)
T ss_pred HHHHHhCC
Confidence 77777754
No 174
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.88 E-value=0.0035 Score=65.28 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=66.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCC-----------------CCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADK-----------------GKN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~-----------------~kp 204 (254)
.+++-|++.+.++.|++.|+++.++||.. .......-++.|+..-...++.+.+.. ..-
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~----~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~ 652 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDN----IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARS 652 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCC----hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEEC
Confidence 57899999999999999999999999988 455555556789963223344332210 011
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+..|..+-+.+++.|+ +++++||..||.-+-+
T Consensus 653 sPe~K~~iV~~lq~~g~-vVam~GDGvNDapALk 685 (941)
T TIGR01517 653 SPLDKQLLVLMLKDMGE-VVAVTGDGTNDAPALK 685 (941)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEECCCCchHHHHH
Confidence 24567778888888886 7899999999985544
No 175
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.83 E-value=0.0025 Score=65.57 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=47.1
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHH-HHCCCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKL-IESGLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L-~~~G~~i~~vTgR~~e~~r~~ 177 (254)
..+.++++|+||||+...+ ....+-|++.++|+.| .+.|..++++|||. ++.
T Consensus 594 ~~~rlI~LDyDGTLlp~~~-----------------------~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~----~~~ 646 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQAS-----------------------IDKSPSSKSIDILNTLCRDKNNMVFIVSARS----RKT 646 (854)
T ss_pred hcCeEEEEecCCcccCCcc-----------------------ccCCCCHHHHHHHHHHHhcCCCEEEEEeCCC----HHH
Confidence 4578999999999996531 0235668999999998 67899999999999 777
Q ss_pred HHHHHHh
Q 025360 178 TRDNLHN 184 (254)
Q Consensus 178 T~~~L~~ 184 (254)
..+|+..
T Consensus 647 L~~~f~~ 653 (854)
T PLN02205 647 LADWFSP 653 (854)
T ss_pred HHHHhCC
Confidence 7777754
No 176
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.78 E-value=0.005 Score=64.49 Aligned_cols=92 Identities=21% Similarity=0.173 Sum_probs=66.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC------------------------cEEEec
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE------------------------RLIMRT 197 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~------------------------~lilr~ 197 (254)
.+|+-|++.+.++.|+++|+++.++|||. ........++.|+-.-. .+++.+
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~----~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G 641 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDH----PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHG 641 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEh
Confidence 57999999999999999999999999999 56666677778883110 134443
Q ss_pred CCCC-------------------CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 198 AADK-------------------GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 198 ~~~~-------------------~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+-. ..-.+.-|..+-+.+++.|+ +++++||..+|..+-+
T Consensus 642 ~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~paLk 700 (997)
T TIGR01106 642 SDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPALK 700 (997)
T ss_pred HHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHHHh
Confidence 3210 01123567777788888886 8899999999975544
No 177
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.77 E-value=0.0037 Score=54.16 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=42.3
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
+..|..||||||+... |+ . ..+...+.+|++.|++|+++|+++ +...+.
T Consensus 7 ~~lIFtDlD~TLl~~~------------ye------------~---~pA~pv~~el~d~G~~Vi~~SSKT----~aE~~~ 55 (274)
T COG3769 7 PLLIFTDLDGTLLPHS------------YE------------W---QPAAPVLLELKDAGVPVILCSSKT----RAEMLY 55 (274)
T ss_pred ceEEEEcccCcccCCC------------CC------------C---CccchHHHHHHHcCCeEEEeccch----HHHHHH
Confidence 4567789999999842 21 0 123456788999999999999999 666666
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.-+++|+++
T Consensus 56 l~~~l~v~~ 64 (274)
T COG3769 56 LQKSLGVQG 64 (274)
T ss_pred HHHhcCCCC
Confidence 666777763
No 178
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.77 E-value=0.0062 Score=61.09 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=63.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++-|++.+.+++|++.|++++.+||-. .......=++.|+..+ +-+- .+.-|..+-+++++.|
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn----~~TA~aIA~elGI~~v---~A~~-------~PedK~~iV~~lQ~~G- 503 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDN----ELTAATIAKEAGVDRF---VAEC-------KPEDKINVIREEQAKG- 503 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCceE---EcCC-------CHHHHHHHHHHHHhCC-
Confidence 57999999999999999999999999988 5555556678899742 2111 2355777777888777
Q ss_pred cEEEEEcCCcccccccc
Q 025360 222 RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~ 238 (254)
++++++||..||--+-.
T Consensus 504 ~~VaMtGDGvNDAPALa 520 (673)
T PRK14010 504 HIVAMTGDGTNDAPALA 520 (673)
T ss_pred CEEEEECCChhhHHHHH
Confidence 57899999999975433
No 179
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.76 E-value=0.0059 Score=61.21 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++-|++.+.++.|++.|+++.++||.. .......-+++|+..+ +-+- .+.-|..+-+++++.|
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~----~~ta~~iA~~lGI~~v---~a~~-------~PedK~~~v~~lq~~g- 508 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDN----RLTAAAIAAEAGVDDF---IAEA-------TPEDKIALIRQEQAEG- 508 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCEE---EcCC-------CHHHHHHHHHHHHHcC-
Confidence 57899999999999999999999999988 6666777788999642 2111 1244666677777766
Q ss_pred cEEEEEcCCcccccccc
Q 025360 222 RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~ 238 (254)
..++++||..||..+-.
T Consensus 509 ~~VamvGDG~NDapAL~ 525 (675)
T TIGR01497 509 KLVAMTGDGTNDAPALA 525 (675)
T ss_pred CeEEEECCCcchHHHHH
Confidence 47999999999986654
No 180
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=96.62 E-value=0.0072 Score=48.24 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR 222 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~ 222 (254)
...++.+.+.++.|++. +.|++.||-. .....+.++-.|++. .. ++.+.+ +.-|..+.++|.+ .|.
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr----~gsl~~lae~~gi~~-~r-v~a~a~------~e~K~~ii~eLkk-~~~ 94 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDR----KGSLVQLAEFVGIPV-ER-VFAGAD------PEMKAKIIRELKK-RYE 94 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCc----chHHHHHHHHcCCce-ee-eecccC------HHHHHHHHHHhcC-CCc
Confidence 56888999999999999 9999999976 455556666789883 23 333322 2446666666665 456
Q ss_pred EEEEEcCCcccccccc
Q 025360 223 IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 223 i~~~IGDq~sDi~ga~ 238 (254)
.+++|||..+|+.+-+
T Consensus 95 k~vmVGnGaND~laLr 110 (152)
T COG4087 95 KVVMVGNGANDILALR 110 (152)
T ss_pred EEEEecCCcchHHHhh
Confidence 7889999999987655
No 181
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.56 E-value=0.0042 Score=63.16 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--C-cEEEecCC-----------------CC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--E-RLIMRTAA-----------------DK 201 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~-~lilr~~~-----------------~~ 201 (254)
.+|+-|++.+.++.|++.|+++.++||.. ...+...-++.|+..- . +.+..+.+ .-
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDH----LAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 46899999999999999999999999998 5666666678899631 0 00000000 00
Q ss_pred CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 202 GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 202 ~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
..-.+.-|..+-+++++.| .+++++||..||..+-+
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G-~~VamvGDGvNDapAL~ 551 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRG-HLVGMTGDGVNDAPALK 551 (755)
T ss_pred EecCHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHH
Confidence 0112355777777888888 47999999999975544
No 182
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.56 E-value=0.011 Score=59.39 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=62.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.+.+++|++.|+++..+||-. .......=++.|++.+ +-+. .+.-|..+-+++++.|
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn----~~TA~aIA~elGId~v---~A~~-------~PedK~~iV~~lQ~~G- 507 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDN----PLTAAAIAAEAGVDDF---LAEA-------TPEDKLALIRQEQAEG- 507 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCcEE---EccC-------CHHHHHHHHHHHHHcC-
Confidence 57889999999999999999999999988 5555566678899642 2111 1345777777788777
Q ss_pred cEEEEEcCCcccccccc
Q 025360 222 RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~ 238 (254)
++++++||..||--+-.
T Consensus 508 ~~VaMtGDGvNDAPALa 524 (679)
T PRK01122 508 RLVAMTGDGTNDAPALA 524 (679)
T ss_pred CeEEEECCCcchHHHHH
Confidence 57999999999965433
No 183
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.54 E-value=0.012 Score=61.21 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=65.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc----EEEecCC-CC---------------
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER----LIMRTAA-DK--------------- 201 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~--------------- 201 (254)
.+|+.|++.+.++.|++.|+++.++||.. ...+....++.|+..-.. ..+.+.. +.
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~----~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v 610 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDN----KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVL 610 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCC----HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeE
Confidence 57999999999999999999999999998 667777778889853111 1222211 00
Q ss_pred -CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 202 -GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 202 -~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
....+..|..+-+.+++.| .+++++||..+|..+-+
T Consensus 611 ~ar~~P~~K~~iV~~lq~~g-~~va~iGDG~ND~~alk 647 (917)
T TIGR01116 611 FSRVEPSHKSELVELLQEQG-EIVAMTGDGVNDAPALK 647 (917)
T ss_pred EEecCHHHHHHHHHHHHhcC-CeEEEecCCcchHHHHH
Confidence 0011344666666777666 47889999999997766
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.45 E-value=0.0043 Score=54.63 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=39.4
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
+..++.|+|||+++.. ...+....++++...+.++.++++|||+ .+...+
T Consensus 2 ~~ll~sDlD~Tl~~~~--------------------------~~~~~~l~~~l~~~~~~~~~~v~~TGRs----~~~~~~ 51 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD--------------------------DEALARLEELLEQQARPEILFVYVTGRS----LESVLR 51 (247)
T ss_dssp SEEEEEETBTTTBHCH--------------------------HHHHHHHHHHHHHHHCCGEEEEEE-SS-----HHHHHH
T ss_pred CEEEEEECCCCCcCCC--------------------------HHHHHHHHHHHHHhhCCCceEEEECCCC----HHHHHH
Confidence 4678999999999321 1122233344444457789999999999 788888
Q ss_pred HHHhCCCCC
Q 025360 181 NLHNQGFVG 189 (254)
Q Consensus 181 ~L~~~G~~~ 189 (254)
.+++.+++.
T Consensus 52 ~~~~~~l~~ 60 (247)
T PF05116_consen 52 LLREYNLPQ 60 (247)
T ss_dssp HHHHCT-EE
T ss_pred HHHhCCCCC
Confidence 899999874
No 185
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.38 E-value=0.011 Score=62.39 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC----------CcEEEecCCCC----------
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY----------ERLIMRTAADK---------- 201 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~----------~~lilr~~~~~---------- 201 (254)
.+++-|++.+.++.|++.|+++.++||.. ...+...-++.|+..- ...++.+....
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~----~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~ 719 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDF----PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDL 719 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC----HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHH
Confidence 57999999999999999999999999998 5666666678898421 12344443210
Q ss_pred -------CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 202 -------GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 202 -------~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
..-.+.-|..+-+.+++.|+ +++++||..||..+-+
T Consensus 720 ~~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapaLk 762 (1053)
T TIGR01523 720 KALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPSLK 762 (1053)
T ss_pred hhcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHHHH
Confidence 01123557777778887775 6789999999975543
No 186
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.36 E-value=0.01 Score=50.62 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=50.5
Q ss_pred hhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc
Q 025360 95 VLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF 174 (254)
Q Consensus 95 ~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~ 174 (254)
.+...+++.+|+||||||++....- + ....-.-|++.+||+.+.+ .|.|++-|+..
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~~~-----------~--------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~---- 70 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRSPA-----------E--------TGEELMRPYLHEFLTSAYE-DYDIVIWSATS---- 70 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccccC-----------C--------CceEEeCCCHHHHHHHHHh-CCEEEEEecCC----
Confidence 3445678999999999999752100 0 1123467999999999998 59999999998
Q ss_pred HHHHHHHHHhCCCC
Q 025360 175 GQVTRDNLHNQGFV 188 (254)
Q Consensus 175 r~~T~~~L~~~G~~ 188 (254)
..-.+..|..+|+.
T Consensus 71 ~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 71 MKWIEIKMTELGVL 84 (195)
T ss_pred HHHHHHHHHHhccc
Confidence 45555666666653
No 187
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=96.32 E-value=0.016 Score=52.81 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCccc
Q 025360 98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVILVTGRDEET 173 (254)
Q Consensus 98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~----G~~i~~vTgR~~e~ 173 (254)
....-++.|||||.|+-. ..++|++.+.++.|..+ .++.+|+||-.+-.
T Consensus 32 s~~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~ 84 (389)
T KOG1618|consen 32 SPPTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGIL 84 (389)
T ss_pred CCCceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcc
Confidence 345678999999988863 56999999999999988 89999999986323
Q ss_pred cHHHHHHHHHhCCCC
Q 025360 174 FGQVTRDNLHNQGFV 188 (254)
Q Consensus 174 ~r~~T~~~L~~~G~~ 188 (254)
.+..+.+.=+.+|+.
T Consensus 85 E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 85 ESSRAQELSALLGVE 99 (389)
T ss_pred hhhHHHHHHHhhCCc
Confidence 344444444566775
No 188
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.29 E-value=0.016 Score=59.86 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=64.9
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp 204 (254)
.+++-|++.+.++.|++.|+++.++||-. ...+...-++.|+.. .+ ++.+.+ +. ..-
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~----~~tA~aIA~~lGI~~-~~-v~~g~~l~~~~~~el~~~~~~~~vfAr~ 586 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDN----EIVTARICQEVGIDA-ND-FLLGADIEELSDEELARELRKYHIFARL 586 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCC-CC-eeecHhhhhCCHHHHHHHhhhCeEEEEC
Confidence 57899999999999999999999999987 455555667889962 22 222211 00 001
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+.-|..+-+.+++.|+ +++++||..||.-+-+
T Consensus 587 ~Pe~K~~iV~~lq~~G~-vVam~GDGvNDapALk 619 (867)
T TIGR01524 587 TPMQKSRIIGLLKKAGH-TVGFLGDGINDAPALR 619 (867)
T ss_pred CHHHHHHHHHHHHhCCC-EEEEECCCcccHHHHH
Confidence 23567777788888874 7889999999976554
No 189
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.27 E-value=0.012 Score=61.04 Aligned_cols=90 Identities=21% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp 204 (254)
.+|+-|++.+.++.|++.|+++.++||-. ...+...-++.|+.. ++ ++.+.+ +. ..-
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~ 621 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDS----ELVAAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARL 621 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEc
Confidence 57899999999999999999999999988 555566667889962 22 222221 10 011
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+.-|..+-+++++.| .+++++||..||.-+-+
T Consensus 622 sPe~K~~IV~~Lq~~G-~vVam~GDGvNDaPALk 654 (902)
T PRK10517 622 TPMHKERIVTLLKREG-HVVGFMGDGINDAPALR 654 (902)
T ss_pred CHHHHHHHHHHHHHCC-CEEEEECCCcchHHHHH
Confidence 2456777788888877 57899999999976544
No 190
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.18 E-value=0.027 Score=58.53 Aligned_cols=90 Identities=22% Similarity=0.205 Sum_probs=64.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN 204 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp 204 (254)
.+|+-|++.+.++.|++.|+++.++||-. ...+...-++.|+.. .+ ++.+.+ +. ..-
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~ 621 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDN----PIVTAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKL 621 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEe
Confidence 57899999999999999999999999988 555556667789962 22 222221 10 001
Q ss_pred CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.+.-|..+-+.+++.| .+++++||..||.-+-+
T Consensus 622 sPe~K~~iV~~Lq~~G-~vVamtGDGvNDaPALk 654 (903)
T PRK15122 622 TPLQKSRVLKALQANG-HTVGFLGDGINDAPALR 654 (903)
T ss_pred CHHHHHHHHHHHHhCC-CEEEEECCCchhHHHHH
Confidence 2456777788888877 57899999999975544
No 191
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.029 Score=56.81 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=70.8
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc----EEEecCC-CC----------C----
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER----LIMRTAA-DK----------G---- 202 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~----------~---- 202 (254)
.+||-|++.+.++.+++.|+.|..+||-. .+..+..-++.|+...++ ..+++.. +. +
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~----~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~v 657 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDN----KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLV 657 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCC----HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceE
Confidence 58999999999999999999999999988 666667778889976544 3444432 11 0
Q ss_pred --CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 203 --KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 203 --kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.-.+..|..+-+.|++.| .++++-||..||--+-+
T Consensus 658 FaR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApALK 694 (972)
T KOG0202|consen 658 FARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPALK 694 (972)
T ss_pred EEecCchhHHHHHHHHHhcC-CEEEecCCCccchhhhh
Confidence 112567888888998877 79999999999976554
No 192
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.061 Score=54.93 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T 178 (254)
.|.-++.+=+||++.--. + -.+++.|++...+..|++.|++++++||-. +...
T Consensus 701 ~g~tvv~v~vn~~l~gv~--------~---------------l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn----~~aA 753 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVF--------A---------------LEDQVRPDAALAVAELKSMGIKVVMLTGDN----DAAA 753 (951)
T ss_pred cCceEEEEEECCEEEEEE--------E---------------eccccchhHHHHHHHHHhcCceEEEEcCCC----HHHH
Confidence 567889999999887542 1 147899999999999999999999999988 5555
Q ss_pred HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccc
Q 025360 179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG 236 (254)
Q Consensus 179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~g 236 (254)
...-++.|++. ++ ... + +.-|.+.-++|++.| ..+++|||..||--+
T Consensus 754 ~svA~~VGi~~---V~-aev----~--P~~K~~~Ik~lq~~~-~~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 754 RSVAQQVGIDN---VY-AEV----L--PEQKAEKIKEIQKNG-GPVAMVGDGINDAPA 800 (951)
T ss_pred HHHHHhhCcce---EE-ecc----C--chhhHHHHHHHHhcC-CcEEEEeCCCCccHH
Confidence 55556778642 22 211 1 234677777888776 678999999998533
No 193
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.84 E-value=0.013 Score=50.87 Aligned_cols=48 Identities=25% Similarity=0.215 Sum_probs=29.0
Q ss_pred EEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHH
Q 025360 105 ILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQV 177 (254)
Q Consensus 105 IfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~ 177 (254)
+||.||||..-.+. ...+.+.+++.++|+.|.+.. ..++++|||+ ++.
T Consensus 1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~----~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRS----LDD 49 (235)
T ss_dssp EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-----HHH
T ss_pred CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCC----HHH
Confidence 58999999975310 124678999999999999884 4899999999 555
No 194
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.81 E-value=0.023 Score=58.17 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=49.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~ 177 (254)
.++.+++||.||||..-.+. +-+ .....+-|++.++|+.|.+. +..|++||||+ ++.
T Consensus 505 a~~rll~LDyDGTL~~~~~~---------~~~---------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~----~~~ 562 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNS---------QIK---------EMDLGLHPELKETLKALCSDPKTTVVVLSRSG----KDI 562 (797)
T ss_pred ccCeEEEEecCccccCCCCC---------ccc---------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC----HHH
Confidence 45688999999999953210 000 01356789999999999876 78999999999 888
Q ss_pred HHHHHHhCCC
Q 025360 178 TRDNLHNQGF 187 (254)
Q Consensus 178 T~~~L~~~G~ 187 (254)
.++||...++
T Consensus 563 L~~~~~~~~l 572 (797)
T PLN03063 563 LDKNFGEYNI 572 (797)
T ss_pred HHHHhCCCCC
Confidence 8888875443
No 195
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.61 E-value=0.022 Score=59.00 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=51.2
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~ 177 (254)
.++..++||.||||..-.+.- .....-+....+.+-|+++++|+.|.+. +..|++||||+ ++.
T Consensus 589 a~~RLlfLDyDGTLap~~~~P------------~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~----~~~ 652 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTP------------GRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD----RSV 652 (934)
T ss_pred ccceEEEEecCceeccCCCCc------------ccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC----HHH
Confidence 456889999999999742110 0000001111356779999999999876 78999999999 888
Q ss_pred HHHHHHhCCC
Q 025360 178 TRDNLHNQGF 187 (254)
Q Consensus 178 T~~~L~~~G~ 187 (254)
.++||...++
T Consensus 653 Le~~fg~~~L 662 (934)
T PLN03064 653 LDENFGEFDM 662 (934)
T ss_pred HHHHhCCCCc
Confidence 8888876544
No 196
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.38 E-value=0.037 Score=49.06 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCCceEEEecCCccccch--hhhhhhccCCCCCChHHHHHHHHhCCC-----CCchHHHHHHHHHHHC------CCeEEE
Q 025360 99 DGMDAWILDVDDTCISNV--YYYKGKRYGCDPYDPAGFRAWALKGGC-----PAIPGVLVLFNKLIES------GLKVIL 165 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~pg~~ell~~L~~~------G~~i~~ 165 (254)
+..--|.||-|++|.+-+ ..|.+. | -+.|.+....... =|+..-++-|.+|+++ =+++++
T Consensus 119 ~~qlRIAFDgDaVLfsDesE~vy~~~--G-----L~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtal 191 (264)
T PF06189_consen 119 DDQLRIAFDGDAVLFSDESERVYQEQ--G-----LEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTAL 191 (264)
T ss_pred CCceEEEEcCCeEeecCcchHhHHhc--c-----HHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 345679999999999754 233332 2 1223333222222 2445556666677755 368999
Q ss_pred EeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360 166 VTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFK 245 (254)
Q Consensus 166 vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk 245 (254)
||.|. .-..+-.++.|+.-|+..-+.++|.+-+ |..+.+++ +.-+.++||..=+.++..+.-+..
T Consensus 192 VTAR~-apah~RvI~TLr~Wgv~vDEafFLgG~~---------K~~vL~~~-----~phIFFDDQ~~H~~~a~~~vps~h 256 (264)
T PF06189_consen 192 VTARS-APAHERVIRTLRSWGVRVDEAFFLGGLP---------KGPVLKAF-----RPHIFFDDQDGHLESASKVVPSGH 256 (264)
T ss_pred EEcCC-CchhHHHHHHHHHcCCcHhHHHHhCCCc---------hhHHHHhh-----CCCEeecCchhhhhHhhcCCCEEe
Confidence 99999 5445778889999999843345555532 34433333 346789999999988886666666
Q ss_pred eC
Q 025360 246 LP 247 (254)
Q Consensus 246 lP 247 (254)
+|
T Consensus 257 VP 258 (264)
T PF06189_consen 257 VP 258 (264)
T ss_pred cc
Confidence 66
No 197
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.056 Score=56.27 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC--cEEEecCCCCC-----------------
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE--RLIMRTAADKG----------------- 202 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--~lilr~~~~~~----------------- 202 (254)
.+||-+++.+.++.|++.|+++..+||-. .......=++.|+..-. .+++.+.+-..
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~----~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfA 620 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH----VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFA 620 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC----HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEE
Confidence 58999999999999999999999999987 45555555678986432 33655543110
Q ss_pred CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 203 KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 203 kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
.-.+..|..+-+.+++.| .++++.||..||.-+-+
T Consensus 621 RvsP~qK~~IV~~lq~~g-~vVamtGDGvNDapALk 655 (917)
T COG0474 621 RVSPEQKARIVEALQKSG-HVVAMTGDGVNDAPALK 655 (917)
T ss_pred EcCHHHHHHHHHHHHhCC-CEEEEeCCCchhHHHHH
Confidence 112466788888888887 58899999999985544
No 198
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=95.21 E-value=0.085 Score=50.97 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy 221 (254)
.+++.|++.+.++.|++.|+++.++||.. +..+...=++.|+ +.+ -.+..|..+-+.+++.|
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~----~~~a~~ia~~lgi--~~~-----------~~p~~K~~~v~~l~~~g- 406 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDN----VLTAKAIAKELGI--FAR-----------VTPEEKAALVEALQKKG- 406 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCc--eec-----------cCHHHHHHHHHHHHHCC-
Confidence 46899999999999999999999999998 4444444455676 100 12356766667777777
Q ss_pred cEEEEEcCCcccccccc
Q 025360 222 RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~sDi~ga~ 238 (254)
..++++||..+|..+-.
T Consensus 407 ~~v~~vGDg~nD~~al~ 423 (499)
T TIGR01494 407 RVVAMTGDGVNDAPALK 423 (499)
T ss_pred CEEEEECCChhhHHHHH
Confidence 56889999999985544
No 199
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.97 E-value=0.064 Score=50.02 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc------
Q 025360 98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE------ 171 (254)
Q Consensus 98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~------ 171 (254)
..+.+.+.||+||||++|.+-.. | +-++..| ....|.+..=++.|.+.|++++|-|+..+
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~v---f---~~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~ 137 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKV---F---PKGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKL 137 (422)
T ss_pred CCCcceEEEecCCceeecCCcce---e---eccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcc
Confidence 35678899999999999863110 0 1112222 34667777778999999999999999863
Q ss_pred --cccHHHHHHHHHhCCCCCCCcEEEecC-CCCCCCCcccHHHHHHHHHHcCCcE----EEEEcCCc
Q 025360 172 --ETFGQVTRDNLHNQGFVGYERLIMRTA-ADKGKNAVTYKSEIRKQLLEEGYRI----WGNIGDQW 231 (254)
Q Consensus 172 --e~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~yK~~~r~~l~~~Gy~i----~~~IGDq~ 231 (254)
+..+.-....+.++|+| ..++...- +.-+||..-- -.....+...+++| ..++||-.
T Consensus 138 ~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGM-we~~~~~~nd~~~Isek~s~fvgdaa 201 (422)
T KOG2134|consen 138 ELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGM-WEFLKRLENDSVEISEKASIFVGDAA 201 (422)
T ss_pred hHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhH-HHHHHHHhhccceeeechhhhhhhhc
Confidence 12233345566778888 23332221 2334553211 11223344556654 44667654
No 200
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=94.87 E-value=0.044 Score=52.54 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=55.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC------CCCCCCcEEEecCC----------------CCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ------GFVGYERLIMRTAA----------------DKG 202 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~------G~~~~~~lilr~~~----------------~~~ 202 (254)
.-|....+|+.|++.|.++|++||.+ -..-+.....|--. .+..+|++++.+.. ..+
T Consensus 184 k~~~l~~~L~~lr~~GKklFLiTNS~-~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g 262 (448)
T PF05761_consen 184 KDPKLPPWLERLRSAGKKLFLITNSP-FDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG 262 (448)
T ss_dssp --CHHHHHHHHHHCCT-EEEEE-SS--HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred CCchHHHHHHHHHhcCceEEEecCCC-CchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence 35788899999999999999999999 55445555555433 34456777775432 001
Q ss_pred -----------CCCcccHHHHHHHHH-HcCC--cEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360 203 -----------KNAVTYKSEIRKQLL-EEGY--RIWGNIGDQW-SDLQGEC--TGNRTFKL 246 (254)
Q Consensus 203 -----------kp~~~yK~~~r~~l~-~~Gy--~i~~~IGDq~-sDi~ga~--~g~r~fkl 246 (254)
++..+|..+--..+. -.|. ..|++|||+. +|+...+ .|-||+.+
T Consensus 263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~I 323 (448)
T PF05761_consen 263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAI 323 (448)
T ss_dssp SEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE
T ss_pred ccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEE
Confidence 111233311111121 1222 3589999998 6998876 57777765
No 201
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=94.77 E-value=0.041 Score=39.05 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCcccHHHHHHHHHHcCC--cEEEEEcCC-cccccccc-cCCcEEEeCC
Q 025360 202 GKNAVTYKSEIRKQLLEEGY--RIWGNIGDQ-WSDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 202 ~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq-~sDi~ga~-~g~r~fklPN 248 (254)
+||.+ ..+...+...+. ..+++|||+ .+|+.+|+ +|.+++.+..
T Consensus 3 gKP~p---~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t 50 (75)
T PF13242_consen 3 GKPSP---GMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT 50 (75)
T ss_dssp STTSH---HHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred CCCcH---HHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence 45544 333445555554 359999999 99999998 7888887754
No 202
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=94.56 E-value=0.1 Score=55.18 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.+++.|++.+.++.|++.|+++.++||.. .......-++.|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~----~~TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDN----PLTAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCC
Confidence 57899999999999999999999999998 44445555677883
No 203
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=94.47 E-value=0.14 Score=43.30 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=56.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC---C----CCCCCcEEEecCCCCCCCCcccHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ---G----FVGYERLIMRTAADKGKNAVTYKSEIRK 214 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~---G----~~~~~~lilr~~~~~~kp~~~yK~~~r~ 214 (254)
+++.+|.+.+.+++.+++|+++++-|+-+ - .+..-.+... . |++|++.-. +.++- ...|-.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGS-V---~AQkL~Fghs~agdL~~lfsGyfDtti---G~KrE-~~SY~k---- 168 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS-V---KAQKLFFGHSDAGDLNSLFSGYFDTTI---GKKRE-SQSYAK---- 168 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCC-c---hhHHHhhcccccccHHhhhcceeeccc---ccccc-chhHHH----
Confidence 67899999999999999999999999887 2 2211111110 1 223333211 11110 112222
Q ss_pred HHHHcCC--cEEEEEcCCcccccccc-cCCcEEEe
Q 025360 215 QLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKL 246 (254)
Q Consensus 215 ~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fkl 246 (254)
-...-|. ..++.+.|...-+.+|. +|+++..+
T Consensus 169 Ia~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~ 203 (229)
T COG4229 169 IAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLA 203 (229)
T ss_pred HHHhcCCCchheEEecCCHHHHHHHHhcchheeee
Confidence 2233443 45899999999998887 78888776
No 204
>PLN02645 phosphoglycolate phosphatase
Probab=93.96 E-value=0.024 Score=51.59 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=49.9
Q ss_pred HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC----CCCCCcccHHHHHHHHHHcCCc--EEE
Q 025360 152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD----KGKNAVTYKSEIRKQLLEEGYR--IWG 225 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~----~~kp~~~yK~~~r~~l~~~Gy~--i~~ 225 (254)
..+.|+.++-.++++||++ .... ....+...|...++..+....+. -+||.+ ......++..|.+ .++
T Consensus 178 a~~~l~~~~g~~~i~tn~d-~~~~--~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p---~~~~~a~~~~~~~~~~~~ 251 (311)
T PLN02645 178 ATLCIRENPGCLFIATNRD-AVTH--LTDAQEWAGAGSMVGAIKGSTEREPLVVGKPST---FMMDYLANKFGIEKSQIC 251 (311)
T ss_pred HHHHHhcCCCCEEEEeCCC-CCCC--CCCCCCccchHHHHHHHHHHhCCCcccCCCChH---HHHHHHHHHcCCCcccEE
Confidence 3445554444688999998 3220 11122333443333333222221 136544 3333345555544 599
Q ss_pred EEcCCc-ccccccc-cCCcEEEe
Q 025360 226 NIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 226 ~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
+|||+. +|+.+|+ +|.+++.+
T Consensus 252 ~VGD~~~~Di~~A~~aG~~~ilV 274 (311)
T PLN02645 252 MVGDRLDTDILFGQNGGCKTLLV 274 (311)
T ss_pred EEcCCcHHHHHHHHHcCCCEEEE
Confidence 999998 9999998 78888776
No 205
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.12 Score=47.71 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-.|..+.++++|+++|.+++++||.+
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSP 266 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSP 266 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCc
Confidence 345788999999999999999999999
No 206
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.49 E-value=1.1 Score=43.31 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=69.8
Q ss_pred cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
.+..+++.|+|+|+||--.. ..+.+..+-... ..+..+++..-.+++..|+++|+-++++|-.. + .
T Consensus 218 ~g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~-~---~ 283 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT-E---K 283 (574)
T ss_pred hCcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCc-h---h
Confidence 46678999999999997542 111111110010 11345778888899999999999999999888 3 4
Q ss_pred HHHHHHHhCCCCCCCcEEEecCCC-CCCCCcccH-HHHHHHHHH--cCCcEEEEEcCCccc
Q 025360 177 VTRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYK-SEIRKQLLE--EGYRIWGNIGDQWSD 233 (254)
Q Consensus 177 ~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK-~~~r~~l~~--~Gy~i~~~IGDq~sD 233 (254)
...+-++++ .+.+++.++. ..+-.-.-| +.+|+-..+ .|.+-.++++|++.-
T Consensus 284 da~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~E 339 (574)
T COG3882 284 DAKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAE 339 (574)
T ss_pred hHHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHH
Confidence 444444443 2456665541 111000112 334444444 556678899999853
No 207
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=93.06 E-value=0.76 Score=39.27 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=67.3
Q ss_pred CchHHHHHHHHH-HHCCCeEEEEeCCCcc-ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH--cC
Q 025360 145 AIPGVLVLFNKL-IESGLKVILVTGRDEE-TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE--EG 220 (254)
Q Consensus 145 ~~pg~~ell~~L-~~~G~~i~~vTgR~~e-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~--~G 220 (254)
....++++.+.- ++..--.+++|||. | ...+...+.|...|+. ++.++|++.+....+...||......+.. ..
T Consensus 55 WNe~Iv~la~~S~~~~dtltVLLTGR~-e~~F~~lI~~ml~s~~L~-Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~ 132 (197)
T PF10307_consen 55 WNENIVELARLSMQDPDTLTVLLTGRR-ESKFSSLIERMLASKGLE-FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYKN 132 (197)
T ss_pred hhHHHHHHHHHhhcCCCeeEEEEeCCC-chhHHHHHHHHHhcCCCC-ccEEEeCcccccCccccHHHHHHHHHHHHhcCC
Confidence 456778887744 45567778999999 7 6677778888999998 88899998744444567899888888875 23
Q ss_pred CcEEEEEcCCccccccc
Q 025360 221 YRIWGNIGDQWSDLQGE 237 (254)
Q Consensus 221 y~i~~~IGDq~sDi~ga 237 (254)
.+.+-+.+|+..=+.+-
T Consensus 133 ~~eI~IYeDR~~hvk~F 149 (197)
T PF10307_consen 133 AEEIRIYEDRPKHVKGF 149 (197)
T ss_pred CCEEEEEcCCHHHHHHH
Confidence 35688899998755443
No 208
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=93.05 E-value=0.88 Score=44.29 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCC--CcEEEecCC-CCCC---CCcccHHHHHHHHH
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGY--ERLIMRTAA-DKGK---NAVTYKSEIRKQLL 217 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~--~~lilr~~~-~~~k---p~~~yK~~~r~~l~ 217 (254)
..|.+.+ .++++|.. +++|+.+ +...+.++++ +|++.- .++-...++ ..++ ++..+-++...+++
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp----~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~ 182 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASP----RIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVL 182 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCc----HHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHH
Confidence 4455444 44567854 9999999 7778888876 788731 111111111 1111 11234333344443
Q ss_pred H-cCCc-EEEEEcCCccccc
Q 025360 218 E-EGYR-IWGNIGDQWSDLQ 235 (254)
Q Consensus 218 ~-~Gy~-i~~~IGDq~sDi~ 235 (254)
+ .|.+ .....||+.+|..
T Consensus 183 ~~~g~~~~~~aYgDS~sD~p 202 (497)
T PLN02177 183 KEFGDALPDLGLGDRETDHD 202 (497)
T ss_pred HHhCCCCceEEEECCccHHH
Confidence 2 3321 2367999999974
No 209
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.68 E-value=0.73 Score=40.23 Aligned_cols=99 Identities=11% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCc-cccHHHHHHHHHhCCCCC---C-CcEEEecCCCCCCCCcccHHHHHHHHHH
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDE-ETFGQVTRDNLHNQGFVG---Y-ERLIMRTAADKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~-e~~r~~T~~~L~~~G~~~---~-~~lilr~~~~~~kp~~~yK~~~r~~l~~ 218 (254)
+.++++.+++..++..+..+.++|+.+. +..+......++..|+.. + ..+-+.+.+ ..| ..++++-++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~-~~K-----~~~l~~l~~~ 210 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKG-NSK-----GKRLTQWVEA 210 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCC-CCh-----HHHHHHHHHH
Confidence 3456777888877777766666666541 122333444445555431 1 111111111 111 1455556666
Q ss_pred cCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 219 EGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 219 ~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.|.. .+++|||+.+|+.........+..-|
T Consensus 211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgn 242 (272)
T PRK10530 211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAMGN 242 (272)
T ss_pred cCCCHHHeEEeCCChhhHHHHHhcCceEEecC
Confidence 6754 59999999999988873324554444
No 210
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=91.54 E-value=0.29 Score=47.36 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=27.6
Q ss_pred HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCC
Q 025360 152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVG 189 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~ 189 (254)
.++..++.| +++++|..+ |-..+.++++ +|.+.
T Consensus 101 ~~~~~~~~g-~~vVVTAsP----rvmVEpFake~LG~D~ 134 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMP----RVMVERFAKEHLRADE 134 (498)
T ss_pred HHHHHHcCC-eEEEEeCCH----HHHHHHHHHHhcCCce
Confidence 456667788 999999999 8889999998 88863
No 211
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=90.72 E-value=1.3 Score=33.73 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=49.8
Q ss_pred eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCC--C--CCCc-ccHHHHHHHH-HHcCCcEEEEEcCCc-ccc
Q 025360 162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADK--G--KNAV-TYKSEIRKQL-LEEGYRIWGNIGDQW-SDL 234 (254)
Q Consensus 162 ~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~--~--kp~~-~yK~~~r~~l-~~~Gy~i~~~IGDq~-sDi 234 (254)
++++||+.+ .+......+-|+..|+|. ..+++++-+.. + +... .+|....+++ ........+.|||+- .|.
T Consensus 1 pf~YvS~SP-wnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dp 78 (100)
T PF09949_consen 1 PFFYVSNSP-WNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDP 78 (100)
T ss_pred CEEEEcCCH-HHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCH
Confidence 478999999 998899999999999994 66888876321 1 1223 3675544444 444445688899975 465
Q ss_pred cc
Q 025360 235 QG 236 (254)
Q Consensus 235 ~g 236 (254)
..
T Consensus 79 ei 80 (100)
T PF09949_consen 79 EI 80 (100)
T ss_pred HH
Confidence 43
No 212
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=90.71 E-value=4.2 Score=33.58 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=61.0
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-C-CeEEEEeCCCcc---cc
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-G-LKVILVTGRDEE---TF 174 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G-~~i~~vTgR~~e---~~ 174 (254)
+.+|+|||=|.++.-. ++ ...-|.-+.-++.+++. | ..++++||..+. ..
T Consensus 42 ~ikavVlDKDNcit~P-------------~~------------~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~ 96 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAP-------------YS------------LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDH 96 (190)
T ss_pred CceEEEEcCCCeeeCC-------------cc------------cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCC
Confidence 6899999999998753 22 22334444555566654 4 678899987631 11
Q ss_pred HHHHHHHHH-hCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH----cCCcEEEEEcCCc-ccccccc-cCCcEE
Q 025360 175 GQVTRDNLH-NQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE----EGYRIWGNIGDQW-SDLQGEC-TGNRTF 244 (254)
Q Consensus 175 r~~T~~~L~-~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~----~Gy~i~~~IGDq~-sDi~ga~-~g~r~f 244 (254)
-....+.|+ +-|+| ++|-. ..||.. -.++..-+-. -.-..+++|||+. +||.-|. .|.-.+
T Consensus 97 d~s~Ak~le~k~gIp-----VlRHs--~kKP~c--t~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gV 164 (190)
T KOG2961|consen 97 DDSKAKALEAKIGIP-----VLRHS--VKKPAC--TAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGV 164 (190)
T ss_pred chHHHHHHHHhhCCc-----eEeec--ccCCCc--cHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeE
Confidence 122234444 45887 45543 233322 1221111111 0113589999998 7998776 443333
No 213
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=89.97 E-value=5.2 Score=39.20 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=55.4
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH-HhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL-HNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G 220 (254)
++...||+.|=+.+|++-|++-+.+||-. ..|.... .++|.++|- . ..+| +-|-..-++-++.|
T Consensus 445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN-----~~TAa~IA~EAGVDdfi----A----eatP--EdK~~~I~~eQ~~g 509 (681)
T COG2216 445 KDIVKPGIKERFAELRKMGIKTVMITGDN-----PLTAAAIAAEAGVDDFI----A----EATP--EDKLALIRQEQAEG 509 (681)
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCCC-----HHHHHHHHHHhCchhhh----h----cCCh--HHHHHHHHHHHhcC
Confidence 46788999999999999999999999988 3454444 568998642 1 1122 33444333444444
Q ss_pred CcEEEEEcCCccccc
Q 025360 221 YRIWGNIGDQWSDLQ 235 (254)
Q Consensus 221 y~i~~~IGDq~sDi~ 235 (254)
+.+.+.||.-||--
T Consensus 510 -rlVAMtGDGTNDAP 523 (681)
T COG2216 510 -RLVAMTGDGTNDAP 523 (681)
T ss_pred -cEEEEcCCCCCcch
Confidence 78999999999863
No 214
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=89.74 E-value=0.21 Score=43.91 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCCCcccHHHHHHHHHHcCC--cEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360 201 KGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC-TGNRTFKLPN 248 (254)
Q Consensus 201 ~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~-~g~r~fklPN 248 (254)
.+||.+ ...+..++..|. ..+++|||+. +|+.+|+ +|.+++.+..
T Consensus 176 ~gKP~~---~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 176 IGKPNA---IIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred cCCChH---HHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence 456644 223334444454 4599999996 8999997 7888887753
No 215
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=88.69 E-value=0.85 Score=39.17 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=33.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
+..--++||+||||.-. .....|.+.++|..|+.+ +.|.+|-|.+
T Consensus 9 ~~~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsD 53 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSD 53 (252)
T ss_pred CCceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence 33456889999999864 255677888888887766 7788887766
No 216
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=88.13 E-value=1.1 Score=38.00 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=45.1
Q ss_pred EEEEeCCCccccHHHHHHHHHhCCCCCCC---cEEEecCCCCCCCCcccH-HHHHHHHHHcCCc--EEEEEcCCcccccc
Q 025360 163 VILVTGRDEETFGQVTRDNLHNQGFVGYE---RLIMRTAADKGKNAVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDLQG 236 (254)
Q Consensus 163 i~~vTgR~~e~~r~~T~~~L~~~G~~~~~---~lilr~~~~~~kp~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi~g 236 (254)
++++++.. .+...++|++.|+..+. .+-+.+.+ .-| ..++.-++..|.+ .+++|||+.+|+..
T Consensus 110 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~ei~~~~-------~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~m 178 (215)
T TIGR01487 110 VIMREGKD----VDEVREIIKERGLNLVDSGFAIHIMKKG-------VDKGVGVEKLKELLGIKPEEVAAIGDSENDIDL 178 (215)
T ss_pred EEecCCcc----HHHHHHHHHhCCeEEEecCceEEEecCC-------CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHH
Confidence 33445444 56667788877765321 11111111 223 3455555666765 48999999999998
Q ss_pred cccCCcEEEeCCC
Q 025360 237 ECTGNRTFKLPNP 249 (254)
Q Consensus 237 a~~g~r~fklPNp 249 (254)
.......|...|.
T Consensus 179 l~~ag~~vam~na 191 (215)
T TIGR01487 179 FRVVGFKVAVANA 191 (215)
T ss_pred HHhCCCeEEcCCc
Confidence 8855567776663
No 217
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=86.90 E-value=2.6 Score=44.80 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
++++-|++.+.++.|++.|+++.++||-.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 67899999999999999999999999976
No 218
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.43 E-value=2.9 Score=35.42 Aligned_cols=37 Identities=11% Similarity=-0.124 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeC
Q 025360 211 EIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLP 247 (254)
Q Consensus 211 ~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklP 247 (254)
+++.-++..|.. .+++|||+.+|+.--......|.||
T Consensus 183 al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~~ 221 (221)
T TIGR02463 183 AANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVIK 221 (221)
T ss_pred HHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEeC
Confidence 445555666643 5999999999998776433666654
No 219
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.92 E-value=2.5 Score=37.27 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=46.1
Q ss_pred HHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC----CCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--C-cEEEEE
Q 025360 155 KLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV----GYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--Y-RIWGNI 227 (254)
Q Consensus 155 ~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~----~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y-~i~~~I 227 (254)
.++..++..+++-..+ ....+...+.|+..|+. .+.--++... .++ .+++.-++..| . ..+++|
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~-~Kg-------~al~~l~~~~~i~~~~~v~~~ 213 (273)
T PRK00192 143 LAKDREFSEPFLWNGS-EAAKERFEEALKRLGLKVTRGGRFLHLLGGG-DKG-------KAVRWLKELYRRQDGVETIAL 213 (273)
T ss_pred HHHhcccCCceeecCc-hHHHHHHHHHHHHcCCEEEECCeEEEEeCCC-CHH-------HHHHHHHHHHhccCCceEEEE
Confidence 3455566655552223 23356667777777764 2211122221 211 23333334444 3 679999
Q ss_pred cCCcccccccccCCcEEEeCC
Q 025360 228 GDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 228 GDq~sDi~ga~~g~r~fklPN 248 (254)
||+.+|+.........+...|
T Consensus 214 GDs~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 214 GDSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred cCChhhHHHHHhCCeeEEeCC
Confidence 999999988874445665555
No 220
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=85.88 E-value=0.51 Score=41.02 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHcCC---cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360 214 KQLLEEGY---RIWGNIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 214 ~~l~~~Gy---~i~~~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
..++..|. +.+++|||+. +|+.+|+ +|.+++.+
T Consensus 196 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v 233 (236)
T TIGR01460 196 AALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV 233 (236)
T ss_pred HHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence 34444443 2359999998 8999997 78888765
No 221
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=84.67 E-value=0.58 Score=38.88 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.9
Q ss_pred ceEEEecCCccccchhhh
Q 025360 102 DAWILDVDDTCISNVYYY 119 (254)
Q Consensus 102 ~avIfDIDgTll~~~~~~ 119 (254)
++|+||.||||+++.+.+
T Consensus 2 ~~i~fDktGTLt~~~~~v 19 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKMSV 19 (215)
T ss_dssp SEEEEECCTTTBESHHEE
T ss_pred eEEEEecCCCcccCeEEE
Confidence 689999999999987655
No 222
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=84.02 E-value=1.2 Score=40.57 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=20.7
Q ss_pred cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360 222 RIWGNIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 222 ~i~~~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
+.+++|||++ +||.+|. +|..++.+
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV 290 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLV 290 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEe
Confidence 4699999998 8999997 67777655
No 223
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=82.45 E-value=8.9 Score=39.69 Aligned_cols=92 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCCCC-----------------C
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAADK-----------------G 202 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~~-----------------~ 202 (254)
++|.-||+.+.++.++..|++|-.|||-. -....+.-.+-|+-.-+. +.+-+.+.+ .
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDN----I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlA 720 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDN----INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLA 720 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCc----HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeee
Confidence 78999999999999999999999999988 333334445557743222 333332211 0
Q ss_pred CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 203 KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 203 kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
...+.-|.-+-+.|++.| .++++-||.-+|--+-+
T Consensus 721 RSSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPALk 755 (1034)
T KOG0204|consen 721 RSSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPALK 755 (1034)
T ss_pred cCCCchHHHHHHHHHhcC-cEEEEecCCCCCchhhh
Confidence 112344555556677655 68999999999976655
No 224
>PLN03190 aminophospholipid translocase; Provisional
Probab=81.91 E-value=9.1 Score=41.27 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=27.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.+++-+++.+.++.|+++|+++.++||..
T Consensus 724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~ 752 (1178)
T PLN03190 724 EDKLQQGVPEAIESLRTAGIKVWVLTGDK 752 (1178)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence 56899999999999999999999999976
No 225
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.80 E-value=6.6 Score=37.90 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCCCCCC-CCcccHHHHHHHHHHcCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAADKGK-NAVTYKSEIRKQLLEEGY 221 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~k-p~~~yK~~~r~~l~~~Gy 221 (254)
-|.....+|++.+.+.|.+|+++|.=. -- -+..+..|.+.|+..+. .++++++.--.| +...+|.- ..++.-.-
T Consensus 99 ypn~~~~eL~e~ai~n~krVIlISDMY-lp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~V--lk~EnVd~ 174 (635)
T COG5610 99 YPNKKNIELVEEAIKNEKRVILISDMY-LP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAV--LKLENVDP 174 (635)
T ss_pred eccccchHHHHHHHhCCCeEEEEeccc-Cc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHH--HhhcCCCh
Confidence 455567899999999999999999874 11 46677889999998654 367776542122 22244432 12222223
Q ss_pred cEEEEEcCCcc-cccccc
Q 025360 222 RIWGNIGDQWS-DLQGEC 238 (254)
Q Consensus 222 ~i~~~IGDq~s-Di~ga~ 238 (254)
..|+.+||+|. |..-++
T Consensus 175 ~~w~H~GDN~~aD~l~pk 192 (635)
T COG5610 175 KKWIHCGDNWVADYLKPK 192 (635)
T ss_pred hheEEecCchhhhhcCcc
Confidence 45999999984 766554
No 226
>PRK10444 UMP phosphatase; Provisional
Probab=81.41 E-value=1.2 Score=39.31 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=30.1
Q ss_pred CCCCCcccHHHHHHHHHHcCC--cEEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360 201 KGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC-TGNRTFKLP 247 (254)
Q Consensus 201 ~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~-~g~r~fklP 247 (254)
.+||.+ ......++..|. ..+++|||+. +|+.+|+ +|.+++.+.
T Consensus 172 ~gKP~~---~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 172 VGKPSP---WIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred cCCCCH---HHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 356543 333334444453 4599999997 8999998 788888774
No 227
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=79.19 E-value=7.7 Score=30.66 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcc
Q 025360 162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWS 232 (254)
Q Consensus 162 ~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~s 232 (254)
+||+++||+ ...++.....|++.|+.. +++......++ ...+.+.+.+..-++-|+++-.|...
T Consensus 1 kVFIvhg~~-~~~~~~v~~~L~~~~~ep---~i~~~~~~~g~---tiie~le~~~~~~~faIvl~TpDD~~ 64 (125)
T PF10137_consen 1 KVFIVHGRD-LAAAEAVERFLEKLGLEP---IIWHEQPNLGQ---TIIEKLEEAADSVDFAIVLFTPDDIG 64 (125)
T ss_pred CEEEEeCCC-HHHHHHHHHHHHhCCCce---EEeecCCCCCC---chHHHHHHHhccCCEEEEEEcccccc
Confidence 589999999 888999999999888863 44444333332 23445555566677788888776554
No 228
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=79.06 E-value=7.5 Score=31.68 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCc-cccHHHHHHHHHh-CCCCCCCcEEEecC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDE-ETFGQVTRDNLHN-QGFVGYERLIMRTA 198 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~-e~~r~~T~~~L~~-~G~~~~~~lilr~~ 198 (254)
-...|++.+.+++|.+. +.|.++|.-.. .+.-+.--+||.+ +-|-.+..+++++.
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn 123 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN 123 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC
Confidence 56889999999999988 99999998731 2333455567765 45545677888765
No 229
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=78.85 E-value=2.7 Score=37.69 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCCcccHHHHHHHHHHcCC--cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360 202 GKNAVTYKSEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC-TGNRTFKL 246 (254)
Q Consensus 202 ~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~-~g~r~fkl 246 (254)
+|| +....+.++...|. ..+++|||+. +||.+|. +|..++.+
T Consensus 189 GKP---~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV 234 (269)
T COG0647 189 GKP---SPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLV 234 (269)
T ss_pred CCC---CHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEE
Confidence 455 44555556666665 3689999999 7999998 67776654
No 230
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=76.58 E-value=11 Score=32.75 Aligned_cols=89 Identities=16% Similarity=0.059 Sum_probs=49.4
Q ss_pred CCCeEEEEeCCCc-cccHHHHHHHHHhCCCCCCCcEEEecCCC-CCCCCcccH-HHHHHHHHHcCC--cEEEEEcCCccc
Q 025360 159 SGLKVILVTGRDE-ETFGQVTRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYK-SEIRKQLLEEGY--RIWGNIGDQWSD 233 (254)
Q Consensus 159 ~G~~i~~vTgR~~-e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK-~~~r~~l~~~Gy--~i~~~IGDq~sD 233 (254)
.-+++.+...... +.......+.|.+.|+. + ..+.++... .-.|...-| .+++.-++..|. ..++++||+.+|
T Consensus 118 ~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND 195 (249)
T TIGR01485 118 RPHKVSFFLDPEAAPEVIKQLTEMLKETGLD-V-KLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGND 195 (249)
T ss_pred CCeeEEEEechhhhhHHHHHHHHHHHhcCCC-E-EEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhH
Confidence 3467777765430 11233345666766664 2 333333110 000111223 344444455564 469999999999
Q ss_pred cccccc-CCcEEEeCCC
Q 025360 234 LQGECT-GNRTFKLPNP 249 (254)
Q Consensus 234 i~ga~~-g~r~fklPNp 249 (254)
+..... +...+.+.|.
T Consensus 196 ~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 196 IELFEIGSVRGVIVSNA 212 (249)
T ss_pred HHHHHccCCcEEEECCC
Confidence 999875 6788888875
No 231
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=69.74 E-value=16 Score=33.23 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.8
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
..+|...+++++|+++|+++++...
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 3577889999999999999987653
No 232
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=68.51 E-value=42 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.5
Q ss_pred CCCceEEEecCCccccchh
Q 025360 99 DGMDAWILDVDDTCISNVY 117 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~ 117 (254)
..+..|++|||.|+.++..
T Consensus 137 ~~~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHG 155 (448)
T ss_pred cccceEEEecccccccchh
Confidence 3478999999999988754
No 233
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.69 E-value=53 Score=27.08 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~ 177 (254)
.+++.|+|-+=|--.-+- ...-+||-.++...++++|+ .|+++|=++ .-.
T Consensus 36 ~gKkVvlf~lPGAFTPTC-------------------------S~~hlPgY~~~~d~f~~kGVD~I~cVSVND----~FV 86 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTC-------------------------SSSHLPGYLELADEFKAKGVDEIYCVSVND----AFV 86 (165)
T ss_pred CCCEEEEEeCCCccCCCc-------------------------ccccCccHHHHHHHHHHcCCceEEEEEeCc----HHH
Confidence 568899999888444332 24578999999999999998 677888888 677
Q ss_pred HHHHHHhCCCCCCCcEEEecC
Q 025360 178 TRDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 178 T~~~L~~~G~~~~~~lilr~~ 198 (254)
..+|=+.+|..+ ++.+-++
T Consensus 87 m~AWak~~g~~~--~I~fi~D 105 (165)
T COG0678 87 MNAWAKSQGGEG--NIKFIPD 105 (165)
T ss_pred HHHHHHhcCCCc--cEEEecC
Confidence 788999999974 4544444
No 234
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=66.57 E-value=13 Score=29.96 Aligned_cols=53 Identities=19% Similarity=0.116 Sum_probs=36.6
Q ss_pred eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182 (254)
Q Consensus 103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L 182 (254)
.-++|+||.+++.. ..--...-++++.+.+.|.++++.|.-. + -..|.+.|
T Consensus 45 iAildL~G~~l~l~--------------------------S~R~~~~~evi~~I~~~G~PviVAtDV~-p--~P~~V~Ki 95 (138)
T PF04312_consen 45 IAILDLDGELLDLK--------------------------SSRNMSRSEVIEWISEYGKPVIVATDVS-P--PPETVKKI 95 (138)
T ss_pred EEEEecCCcEEEEE--------------------------eecCCCHHHHHHHHHHcCCEEEEEecCC-C--CcHHHHHH
Confidence 36799999999753 1112234577888899999999999986 4 24555555
Q ss_pred Hh
Q 025360 183 HN 184 (254)
Q Consensus 183 ~~ 184 (254)
..
T Consensus 96 a~ 97 (138)
T PF04312_consen 96 AR 97 (138)
T ss_pred HH
Confidence 43
No 235
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=66.14 E-value=19 Score=38.36 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHH----HCCCeEEEEeCCCccccHHHHHHHHHhCCCC--CCCcEEEecC
Q 025360 148 GVLVLFNKLI----ESGLKVILVTGRDEETFGQVTRDNLHNQGFV--GYERLIMRTA 198 (254)
Q Consensus 148 g~~ell~~L~----~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~--~~~~lilr~~ 198 (254)
.+.++++.++ +..+.++++|||+ ...+...|++.|++ .+ +.++++.
T Consensus 788 ~l~~~~~~~~~~~~~~~igfv~aTGR~----l~~~~~~l~~~~lp~~~P-D~lI~~v 839 (1050)
T TIGR02468 788 IIKNIFEAVRKERMEGSSGFILSTSMT----ISEIQSFLKSGGLNPTDF-DALICNS 839 (1050)
T ss_pred HHHHHHHHHhccccCCceEEEEEcCCC----HHHHHHHHHhCCCCCCCC-CEEEeCC
Confidence 3445556665 2337889999999 88999999999998 54 4444433
No 236
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.03 E-value=19 Score=32.39 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
..+|...+++++|+++|+++++...
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3578889999999999999998774
No 237
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=65.63 E-value=24 Score=30.72 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=58.2
Q ss_pred HHhCCCCCchHHHHHHHHHHHCCCe---EEEEeCCCc---cccHHHHHHHHHhCCCCC-CCcEEEecCCCCCCCCcccHH
Q 025360 138 ALKGGCPAIPGVLVLFNKLIESGLK---VILVTGRDE---ETFGQVTRDNLHNQGFVG-YERLIMRTAADKGKNAVTYKS 210 (254)
Q Consensus 138 ~~~~~~~~~pg~~ell~~L~~~G~~---i~~vTgR~~---e~~r~~T~~~L~~~G~~~-~~~lilr~~~~~~kp~~~yK~ 210 (254)
++.+.-.-.|...++++.++++|-+ +.++|.--= .++-....+.+++.|++. |-++++-+.+..++++..|.+
T Consensus 5 I~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~ 84 (223)
T PF06415_consen 5 IEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLE 84 (223)
T ss_dssp HHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHH
Confidence 4445555667888888888877644 346665420 233455667778889874 578888888877777778888
Q ss_pred HHHHHHHHcCC-cEEEEEc
Q 025360 211 EIRKQLLEEGY-RIWGNIG 228 (254)
Q Consensus 211 ~~r~~l~~~Gy-~i~~~IG 228 (254)
.+...+.+.|. +|.-+.|
T Consensus 85 ~l~~~l~~~~~g~IAsv~G 103 (223)
T PF06415_consen 85 ELEEKLAEIGIGRIASVSG 103 (223)
T ss_dssp HHHHHHHHHTCTEEEEEEE
T ss_pred HHHHHHHhhCCceEEEEec
Confidence 88888888766 4544444
No 238
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=65.59 E-value=21 Score=28.51 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=48.2
Q ss_pred CCceEEEecCCccccchhhhhhhc--cCCCCCChHHHHHHHHh-CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKR--YGCDPYDPAGFRAWALK-GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~--~g~~~~~~~~~~~~~~~-~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~ 176 (254)
.++++.||+|=||+--. ...+ +.-.|+-. +.-.. ....-++.+...|..|+++|++++.+|+.. . -+
T Consensus 4 ~p~~~~fdldytiwP~~---vdthl~~pfkP~k~----~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~-a--p~ 73 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRL---VDTHLDYPFKPFKC----ECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTM-A--PQ 73 (144)
T ss_pred CCceeEEeccceeeeEE---EEeccccccccccc----CcccCcceeeeccchhHHHHHHHhcCcEEEEecCCC-C--HH
Confidence 57889999999987421 1101 11111100 00011 234577899999999999999999999987 3 23
Q ss_pred HHHHHHHhCCCC
Q 025360 177 VTRDNLHNQGFV 188 (254)
Q Consensus 177 ~T~~~L~~~G~~ 188 (254)
.....|+.+..+
T Consensus 74 iA~q~L~~fkvk 85 (144)
T KOG4549|consen 74 IASQGLETFKVK 85 (144)
T ss_pred HHHHHHHHhccC
Confidence 334566666554
No 239
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=64.32 E-value=50 Score=34.42 Aligned_cols=57 Identities=25% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-+....||+|.--..+. .-...|-. .--+||-+.+.+.+..+++.|++++.+||+.
T Consensus 560 ~~p~~~~f~~d~~n~p~~---nl~FlGl~------------s~idPPR~~vP~Av~~CrsAGIkvimVTgdh 616 (1019)
T KOG0203|consen 560 KFPRGFQFDTDDVNFPTD---NLRFLGLI------------SMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 616 (1019)
T ss_pred cCCCceEeecCCCCCcch---hccccchh------------hccCCCcccCchhhhhhhhhCceEEEEecCc
Confidence 456789999987443322 11111210 1136788888899999999999999999997
No 240
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=64.22 E-value=21 Score=30.16 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.+++.-++..|.. .+++|||+.+|+.........|.+-|
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecC
Confidence 4444455556654 49999999999988875445666555
No 241
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=64.05 E-value=18 Score=30.31 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC
Q 025360 81 ELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160 (254)
Q Consensus 81 ~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G 160 (254)
....+||..+++.+...+...+.+++||..+ ... . + -+.+ ....-+.++++.++++|
T Consensus 67 ~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~--~~~------~-~---~~~~-----------~~~~~~~~f~~~~~~~G 123 (196)
T cd06416 67 GSAAGQVQTFLQYLKANGIKYGTVWIDIEQN--PCQ------W-S---SDVA-----------SNCQFLQELVSAAKALG 123 (196)
T ss_pred CCHHHHHHHHHHHHHhCCCceeEEEEEEecC--CCC------C-c---CCHH-----------HHHHHHHHHHHHHHHhC
Confidence 4567899998887765433445677999975 110 0 0 0111 11234568888999899
Q ss_pred CeEEEEeCCC
Q 025360 161 LKVILVTGRD 170 (254)
Q Consensus 161 ~~i~~vTgR~ 170 (254)
++++|-|+..
T Consensus 124 ~~~~iYt~~~ 133 (196)
T cd06416 124 LKVGIYSSQY 133 (196)
T ss_pred CeEEEEcCcc
Confidence 9999999987
No 242
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=63.32 E-value=4.8 Score=35.98 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=54.4
Q ss_pred cCCCCceEEEecCCccccchh---hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc
Q 025360 97 SGDGMDAWILDVDDTCISNVY---YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET 173 (254)
Q Consensus 97 ~~~~~~avIfDIDgTll~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~ 173 (254)
...+++.+|+|+|+||..+.. ......|... -..+...-.--....|++-+++..+-+. +.+++-|+-. +.
T Consensus 85 ~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~----v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~-~~ 158 (262)
T KOG1605|consen 85 ATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVP----VEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASL-EV 158 (262)
T ss_pred ccCCCceEEEeCCCcccccccccCCCCCcceeee----eeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhh-HH
Confidence 457899999999999886641 1111111100 0000000001245678999999988877 8899999988 88
Q ss_pred cHHHHHHHHHh-CCC
Q 025360 174 FGQVTRDNLHN-QGF 187 (254)
Q Consensus 174 ~r~~T~~~L~~-~G~ 187 (254)
+.......|.. .|+
T Consensus 159 Ya~~v~D~LD~~~~i 173 (262)
T KOG1605|consen 159 YADPLLDILDPDRKI 173 (262)
T ss_pred HHHHHHHHccCCCCe
Confidence 88888888886 555
No 243
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.83 E-value=33 Score=31.16 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
...+|...+++++|+++|+++++...-. -......-+.+.+.|+
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P~-v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEPF-VLKNSKNWGEAVKAGA 109 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcCc-ccCCchhHHHHHhCCC
Confidence 3466777899999999999999877532 2112233345566666
No 244
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=62.50 E-value=14 Score=32.64 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=41.2
Q ss_pred CChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 129 YDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+......+-+.......-+|+.++++.|.++++++.+.|+-- -+..+.-|++.|..
T Consensus 75 l~k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGl----gdvI~~vL~q~~~~ 130 (246)
T PF05822_consen 75 LTKSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGL----GDVIEEVLRQAGVF 130 (246)
T ss_dssp -BGGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEE----HHHHHHHHHHTT--
T ss_pred cCHHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCc----HHHHHHHHHHcCCC
Confidence 455667777777788899999999999999999999999988 67888899988764
No 245
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=62.23 E-value=37 Score=32.03 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHH
Q 025360 78 RDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI 157 (254)
Q Consensus 78 ~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~ 157 (254)
.|+..|.+.|+-.+ +. ...+.+-|-||=|+||.+-.. .+. ...+.+|-.+ .|.
T Consensus 127 NDvR~ILN~AQi~a--l~-~~~~L~LvTFDgDvTLY~DG~----------sl~----------~d~pvi~~ii----~LL 179 (408)
T PF06437_consen 127 NDVRHILNTAQIMA--LA-KNYGLKLVTFDGDVTLYEDGA----------SLE----------PDNPVIPRII----KLL 179 (408)
T ss_pred HHHHHHHHHHHHHH--hc-ccCCceEEEEcCCcccccCCC----------CCC----------CCchHHHHHH----HHH
Confidence 46777777766442 11 122678899999999997521 111 1344444444 456
Q ss_pred HCCCeEEEEeCCC
Q 025360 158 ESGLKVILVTGRD 170 (254)
Q Consensus 158 ~~G~~i~~vTgR~ 170 (254)
++|++|.+||.-.
T Consensus 180 ~~gv~VgIVTAAG 192 (408)
T PF06437_consen 180 RRGVKVGIVTAAG 192 (408)
T ss_pred hcCCeEEEEeCCC
Confidence 8899999999863
No 246
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=61.87 E-value=30 Score=27.18 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
+-.-.+.|=+||+-+-.- .+.++.+.+++|...++++++++.|+++.+++-.-
T Consensus 33 g~dV~iF~t~dG~~l~~K-------------------~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 33 GYDVTIFFTMDGVTLVKK-------------------KVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCceEEEEEeccceeeee-------------------cchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 334457889999777542 12233456888999999999999999999998765
No 247
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=61.07 E-value=65 Score=26.68 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=46.7
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHH
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQV 177 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~ 177 (254)
.|++.|||-+=|--.-+- ...-+||-.+-.++|+++|+ .|+.+|-.+ .-+
T Consensus 42 ~GKKvIifGvPgAFtPtC-------------------------s~~HvPGyi~~a~elksKGVd~iicvSVnD----pFv 92 (171)
T KOG0541|consen 42 KGKKVILFGVPGAFTPTC-------------------------SSSHVPGYIEKADELKSKGVDEIICVSVND----PFV 92 (171)
T ss_pred CCceEEEEcCCCccCCcc-------------------------ccccCchHHHHHHHHHhcCCcEEEEEecCc----HHH
Confidence 458899998887332221 23578999999999999998 566888888 678
Q ss_pred HHHHHHhCCCC
Q 025360 178 TRDNLHNQGFV 188 (254)
Q Consensus 178 T~~~L~~~G~~ 188 (254)
+..|=+.+|-.
T Consensus 93 ~~aW~k~~g~~ 103 (171)
T KOG0541|consen 93 MKAWAKSLGAN 103 (171)
T ss_pred HHHHHhhcCcc
Confidence 88899888775
No 248
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=60.79 E-value=61 Score=29.66 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
+....|...++++.++++|+.+++.||-. .....+.| ..+.
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~----~~e~l~~L-~~~~ 180 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGT----RPDVLEKL-EEEP 180 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCC----CHHHHHHH-HhcC
Confidence 34456788999999999999999999987 33444555 3344
No 249
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=57.86 E-value=55 Score=30.71 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=56.6
Q ss_pred CCeEEEEeCCCcccc-----HHHHHHHHHhCCCC--CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc---EEEEEcC
Q 025360 160 GLKVILVTGRDEETF-----GQVTRDNLHNQGFV--GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR---IWGNIGD 229 (254)
Q Consensus 160 G~~i~~vTgR~~e~~-----r~~T~~~L~~~G~~--~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~---i~~~IGD 229 (254)
+-+++++|.+. -.. .+...+.|++.|+. -+...+.-+++...|+.......+.+.+.+.|.+ .++.+|=
T Consensus 30 ~~r~lvVtD~~-v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSG-VAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcc-hHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 46899999986 322 25566778888853 1234455555566665323334556667777776 7888887
Q ss_pred Cc-ccccccc-----cCCcEEEeCCC
Q 025360 230 QW-SDLQGEC-----TGNRTFKLPNP 249 (254)
Q Consensus 230 q~-sDi~ga~-----~g~r~fklPNp 249 (254)
.. .|+.+.- .|.+.+.+|.-
T Consensus 109 G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 109 GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 55 5877654 37788888853
No 250
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=57.43 E-value=9.6 Score=33.15 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcc-cccccc-cCCcEEEe
Q 025360 201 KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWS-DLQGEC-TGNRTFKL 246 (254)
Q Consensus 201 ~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~s-Di~ga~-~g~r~fkl 246 (254)
-+||.+.|.+. +|...|.. .+.+|||..+ |+-||. .|+|-+.+
T Consensus 179 vGKP~~~fFe~---al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilV 225 (262)
T KOG3040|consen 179 VGKPSPFFFES---ALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILV 225 (262)
T ss_pred ecCCCHHHHHH---HHHhcCCChHHheEEccccccchhhHhhhcceeEEe
Confidence 46777766654 56666654 4889999885 777765 58887765
No 251
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=56.99 E-value=59 Score=27.70 Aligned_cols=89 Identities=15% Similarity=0.002 Sum_probs=46.6
Q ss_pred CCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccH-HHHHHHHHHcCCc--EEEEEcCCcccc
Q 025360 159 SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDL 234 (254)
Q Consensus 159 ~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi 234 (254)
..+++.+................|.+.+.. ..++.+... ..-.|...-| .+++.-++..|.. .+++|||+.+|+
T Consensus 111 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~ 188 (236)
T TIGR02471 111 GPFKISYLLDPEGEPILPQIRQRLRQQSQA--AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDE 188 (236)
T ss_pred CCeeEEEEECcccchHHHHHHHHHHhccCC--EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHH
Confidence 346777765432011234455677776643 123333211 0000111234 3444444556644 589999999999
Q ss_pred cccccCCcEEEeCCC
Q 025360 235 QGECTGNRTFKLPNP 249 (254)
Q Consensus 235 ~ga~~g~r~fklPNp 249 (254)
.........|.+-|.
T Consensus 189 ~ml~~~~~~iav~na 203 (236)
T TIGR02471 189 EMLRGLTLGVVVGNH 203 (236)
T ss_pred HHHcCCCcEEEEcCC
Confidence 887744466776664
No 252
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=56.58 E-value=22 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.++...+++++++++|+.++.||..+ .+...+++++.+++
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~----~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDD----PEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSS----HHHHHHHHHHHTCS
T ss_pred chhHHHHHhhhhccceEEeeeccccc----ccchhhhhhhhccc
Confidence 45667788889999999999999988 56778888888876
No 253
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=56.57 E-value=48 Score=24.38 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE 191 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~ 191 (254)
.+-...++++.++++|.++.++.-++ ...+.|+..|+..+.
T Consensus 56 gi~~L~~~~~~~~~~g~~l~l~~~~~------~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 56 GLGVILGRYKKIKNEGGEVIVCNVSP------AVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHhCCceEE
Confidence 44555678889999999999877655 566788888987543
No 254
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=56.36 E-value=1.1e+02 Score=27.11 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=39.7
Q ss_pred HHHHHC-CCeEEEEeCCCccccHHHHHH----HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEc
Q 025360 154 NKLIES-GLKVILVTGRDEETFGQVTRD----NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIG 228 (254)
Q Consensus 154 ~~L~~~-G~~i~~vTgR~~e~~r~~T~~----~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IG 228 (254)
++...+ ++.+.++++.. .-..+..++ .|++.+-+ +-++.+++... +-....|+.+.+.|. +|++||
T Consensus 24 DErAdRedI~vrv~gsGa-Km~pe~~~~~~~~~~~~~~pD--f~i~isPN~a~-----PGP~~ARE~l~~~~i-P~IvI~ 94 (277)
T PRK00994 24 DERADREDIDVRVVGSGA-KMGPEEVEEVVKKMLEEWKPD--FVIVISPNPAA-----PGPKKAREILKAAGI-PCIVIG 94 (277)
T ss_pred HhhhcccCceEEEeccCC-CCCHHHHHHHHHHHHHhhCCC--EEEEECCCCCC-----CCchHHHHHHHhcCC-CEEEEc
Confidence 333344 89999888876 443333332 22333332 33455554322 223556778887775 688899
Q ss_pred CCcc
Q 025360 229 DQWS 232 (254)
Q Consensus 229 Dq~s 232 (254)
|.++
T Consensus 95 D~p~ 98 (277)
T PRK00994 95 DAPG 98 (277)
T ss_pred CCCc
Confidence 9885
No 255
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=55.10 E-value=12 Score=31.40 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
..+++-++..|.. .+++|||+.+|+.........|.+-|
T Consensus 152 ~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 192 (225)
T TIGR01482 152 VAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVAN 192 (225)
T ss_pred HHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCC
Confidence 4455555666654 49999999999988874445666655
No 256
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=54.83 E-value=35 Score=26.62 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=34.0
Q ss_pred ccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 025360 58 TVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILD 107 (254)
Q Consensus 58 ~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfD 107 (254)
+-|.+....++..+.++.|+..-..+......-.+.....=.+.+|||||
T Consensus 41 adp~qA~~~~~~rl~s~~~~~~q~~L~~Ayqgv~~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 41 ADPQQAEAQARQRLQSPDWQQLQQQLAQAYQGVVDAWSLGITKYPAVVFD 90 (114)
T ss_pred CChHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHhCccccCEEEEc
Confidence 57888888899999999986655544443333333333334568999999
No 257
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=54.26 E-value=47 Score=23.59 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=39.9
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.+++|+.++-.- .....--..++.+.++++|.++.+..-++ ...+
T Consensus 38 ~~~viid~~~v~~i---------------------------Ds~g~~~L~~l~~~~~~~g~~v~i~~~~~------~~~~ 84 (99)
T cd07043 38 PRRLVLDLSGVTFI---------------------------DSSGLGVLLGAYKRARAAGGRLVLVNVSP------AVRR 84 (99)
T ss_pred CCEEEEECCCCCEE---------------------------cchhHHHHHHHHHHHHHcCCeEEEEcCCH------HHHH
Confidence 57899999884321 23455566788899999999977766544 4556
Q ss_pred HHHhCCCCCC
Q 025360 181 NLHNQGFVGY 190 (254)
Q Consensus 181 ~L~~~G~~~~ 190 (254)
.|+..|+..+
T Consensus 85 ~l~~~gl~~~ 94 (99)
T cd07043 85 VLELTGLDRL 94 (99)
T ss_pred HHHHhCccee
Confidence 7778888643
No 258
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=53.66 E-value=11 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=18.5
Q ss_pred CCceEEEecCCccccchhhhhh
Q 025360 100 GMDAWILDVDDTCISNVYYYKG 121 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~ 121 (254)
..-.++++-|||.+++..|+..
T Consensus 39 ~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 39 GLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred CCcEEEEeCCCCEEccHHHHhh
Confidence 3678999999999999887753
No 259
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=52.99 E-value=25 Score=32.05 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC
Q 025360 142 GCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~ 198 (254)
+...+|..-++++.+++.| +++++|||.. .. +.++++..+ +.++++=+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgs----lp---dv~~~L~~~--dql~~sLd 138 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGS----LP---DVLEELKLP--DQLYVSLD 138 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCC----hH---HHHHHhccC--CEEEEEec
Confidence 5778899999999999999 7999999999 54 444444443 55666544
No 260
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=52.48 E-value=9.8 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.9
Q ss_pred CCceEEEecCCccccchhhhh
Q 025360 100 GMDAWILDVDDTCISNVYYYK 120 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~ 120 (254)
..-.++++-|||.+++..|+.
T Consensus 37 ~~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 37 SPVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred CCcEEEEecCCcEEccHHHHh
Confidence 367899999999999988775
No 261
>PRK07475 hypothetical protein; Provisional
Probab=51.73 E-value=1.6e+02 Score=25.62 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCCCCCCccccccceeecceecccccccccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 025360 29 SRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDV 108 (254)
Q Consensus 29 ~~~~~~~~~~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDI 108 (254)
..||+.-+.-..-.+|-+.|..+-+++- -|..-+ . +. ..+ ......+-++.++ ..|-++|++-+
T Consensus 23 ~~~p~~pgd~~~~~t~~~pv~~~~v~g~--~~~~~~----~----~~-~~~---~~~~l~~aa~~L~--~~G~d~I~~~C 86 (245)
T PRK07475 23 TRFPRIPGDVGNAATWPFPVRYKVVRGA--TPERVV----E----GD-DPS---LLDAFVAAARELE--AEGVRAITTSC 86 (245)
T ss_pred cCCCCCCCCCCCcccCCcCEEEEeeCCC--CHHHHh----c----CC-Ccc---HHHHHHHHHHHHH--HcCCCEEEech
Confidence 4688877777788999999999999973 222111 1 11 111 1222222222333 24577888877
Q ss_pred CCccccchhhhhhhccCCCCCChHHHHHHHH-hCCCCCchHHHHHHHHHHHC---CCeEEEEeCCCccccHHHHHHHHHh
Q 025360 109 DDTCISNVYYYKGKRYGCDPYDPAGFRAWAL-KGGCPAIPGVLVLFNKLIES---GLKVILVTGRDEETFGQVTRDNLHN 184 (254)
Q Consensus 109 DgTll~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~pg~~ell~~L~~~---G~~i~~vTgR~~e~~r~~T~~~L~~ 184 (254)
||+ .+ |.+-++ .-..|.+-.+...+..+++. +-+|.++|... ...+.+.|++
T Consensus 87 -gt~----~~---------------~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~----t~l~~~~l~~ 142 (245)
T PRK07475 87 -GFL----AL---------------FQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILTADA----SSLTPAHLLA 142 (245)
T ss_pred -HHH----HH---------------HHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEeCCc----hhhhHHHHHh
Confidence 332 11 111122 23567777787777777765 57999999998 4577889999
Q ss_pred CCCC
Q 025360 185 QGFV 188 (254)
Q Consensus 185 ~G~~ 188 (254)
.|++
T Consensus 143 ~Gi~ 146 (245)
T PRK07475 143 VGVP 146 (245)
T ss_pred CCCC
Confidence 9996
No 262
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=51.73 E-value=4.8 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=9.3
Q ss_pred ecccccccccccc
Q 025360 50 ANNVRAWRTVPTQ 62 (254)
Q Consensus 50 ~nn~~~~~~~p~~ 62 (254)
-||+.+++|+|+.
T Consensus 9 gnni~~fkt~p~s 21 (38)
T PF09198_consen 9 GNNIQNFKTTPSS 21 (38)
T ss_dssp SS--SSSSSHHHH
T ss_pred CCceeceeecCcc
Confidence 4899999999983
No 263
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=51.31 E-value=93 Score=22.66 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=40.1
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
+.+.+++|+.+.-.- ....+.-..++++.++++|..+.++.-++ ...
T Consensus 42 ~~~~vvidls~v~~i---------------------------Dssgl~~L~~~~~~~~~~~~~~~l~~~~~------~~~ 88 (108)
T TIGR00377 42 GPRPIVLDLEDLEFM---------------------------DSSGLGVLLGRYKQVRRVGGQLVLVSVSP------RVA 88 (108)
T ss_pred CCCeEEEECCCCeEE---------------------------ccccHHHHHHHHHHHHhcCCEEEEEeCCH------HHH
Confidence 577899999984321 13345555677888999999877666544 556
Q ss_pred HHHHhCCCCCC
Q 025360 180 DNLHNQGFVGY 190 (254)
Q Consensus 180 ~~L~~~G~~~~ 190 (254)
+.|+..|+...
T Consensus 89 ~~l~~~~l~~~ 99 (108)
T TIGR00377 89 RLLDITGLLRI 99 (108)
T ss_pred HHHHHhChhhe
Confidence 77888888653
No 264
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=51.28 E-value=45 Score=25.98 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=31.6
Q ss_pred ccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 025360 58 TVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILD 107 (254)
Q Consensus 58 ~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfD 107 (254)
+-|.+....+++.+.+.+++..-..+.+....-.+.-...=.+.+|||||
T Consensus 42 adp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 42 ADPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAWQLGVTKIPAVVVD 91 (113)
T ss_pred CCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCCccCCEEEEc
Confidence 57888989999999998775443333332222223223333568999999
No 265
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=51.16 E-value=12 Score=27.27 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=18.5
Q ss_pred CCceEEEecCCccccchhhhhh
Q 025360 100 GMDAWILDVDDTCISNVYYYKG 121 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~ 121 (254)
..-.++++-|||.+++..|+..
T Consensus 38 ~~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 38 GVLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred CceEEEEecCCCEEccHHHHhh
Confidence 3578999999999999887753
No 266
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=50.16 E-value=28 Score=26.08 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=42.3
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~ 180 (254)
.+.+|||+.+.-.= ....+....++.+.++++|.+++++.-++ ...+
T Consensus 48 ~~~vIlD~s~v~~i---------------------------Dssgi~~L~~~~~~~~~~g~~~~l~~~~~------~v~~ 94 (117)
T PF01740_consen 48 IKNVILDMSGVSFI---------------------------DSSGIQALVDIIKELRRRGVQLVLVGLNP------DVRR 94 (117)
T ss_dssp SSEEEEEETTESEE---------------------------SHHHHHHHHHHHHHHHHTTCEEEEESHHH------HHHH
T ss_pred ceEEEEEEEeCCcC---------------------------CHHHHHHHHHHHHHHHHCCCEEEEEECCH------HHHH
Confidence 68999999995321 12345566788999999999999987765 5556
Q ss_pred HHHhCCCCCC
Q 025360 181 NLHNQGFVGY 190 (254)
Q Consensus 181 ~L~~~G~~~~ 190 (254)
.|...|+...
T Consensus 95 ~l~~~~~~~~ 104 (117)
T PF01740_consen 95 ILERSGLIDF 104 (117)
T ss_dssp HHHHTTGHHH
T ss_pred HHHHcCCChh
Confidence 6888888643
No 267
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=49.93 E-value=33 Score=28.64 Aligned_cols=69 Identities=7% Similarity=-0.102 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 025360 79 DVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIE 158 (254)
Q Consensus 79 d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~ 158 (254)
+.....+||..|++.+...+ +...+++|++.+-.... ..+. ......+.++++.+++
T Consensus 68 ~~~~a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~~~-----------~~~~-----------~~~~~~~~~f~~~v~~ 124 (191)
T cd06414 68 TVAEAREEAEFVLRLIKGYK-LSYPVYYDLEDETQLGA-----------GLSK-----------DQRTDIANAFCETIEA 124 (191)
T ss_pred CHHHHHHHHHHHHHHhhccC-CCCCeEEEeecCCCCCC-----------CCCH-----------HHHHHHHHHHHHHHHH
Confidence 44567789998887776432 22346789987532210 0011 1233456789999999
Q ss_pred CCCeEEEEeCCC
Q 025360 159 SGLKVILVTGRD 170 (254)
Q Consensus 159 ~G~~i~~vTgR~ 170 (254)
.|++++|=|++.
T Consensus 125 ~G~~~~iY~~~~ 136 (191)
T cd06414 125 AGYYPGIYANLS 136 (191)
T ss_pred cCCCeEEEecHH
Confidence 999999999987
No 268
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.87 E-value=68 Score=23.79 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=14.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~ 170 (254)
..++++.|++.|.++.++...+
T Consensus 10 ~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 10 GREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp HHHHHHHHHHTTSEEEEEESSH
T ss_pred HHHHHHHHHhCCCEEEEEECCc
Confidence 4556666777666777777665
No 269
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.84 E-value=74 Score=28.66 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
.+|...+++++|+++|+++++...
T Consensus 68 ~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 68 KFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred hCCCHHHHHHHHHHCCCeEEEEEC
Confidence 567889999999999999987654
No 270
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=49.66 E-value=25 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
--.+.+.+.++.++++|.+++.+|+.+
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 58 GETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356788999999999999999999987
No 271
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=49.29 E-value=14 Score=26.88 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=19.2
Q ss_pred CCCceEEEecCCccccchhhhhh
Q 025360 99 DGMDAWILDVDDTCISNVYYYKG 121 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~ 121 (254)
...-.++++-|||.+++..|+..
T Consensus 38 ~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCCeEEEEeCCCcEEccHHHHhc
Confidence 45678999999999999888753
No 272
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=49.17 E-value=62 Score=23.87 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=41.5
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
+.+.+|+|+-|+-.- +...+....++++.++.+|.++.++--++ ...
T Consensus 40 ~~~~vvlDls~v~~i---------------------------Dssg~~~l~~~~~~~~~~g~~l~l~g~~~------~v~ 86 (109)
T cd07041 40 RARGVIIDLTGVPVI---------------------------DSAVARHLLRLARALRLLGARTILTGIRP------EVA 86 (109)
T ss_pred CCCEEEEECCCCchh---------------------------cHHHHHHHHHHHHHHHHcCCeEEEEeCCH------HHH
Confidence 467899999884331 12244456778889999999999887766 556
Q ss_pred HHHHhCCCCC
Q 025360 180 DNLHNQGFVG 189 (254)
Q Consensus 180 ~~L~~~G~~~ 189 (254)
+.|+..|+..
T Consensus 87 ~~l~~~gl~~ 96 (109)
T cd07041 87 QTLVELGIDL 96 (109)
T ss_pred HHHHHhCCCh
Confidence 7888889864
No 273
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.87 E-value=32 Score=32.39 Aligned_cols=92 Identities=24% Similarity=0.261 Sum_probs=56.5
Q ss_pred HHHHHHHHCC-Ce-EEEEeCCCccccH--HHHHHHHHhCCCC--CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEE
Q 025360 151 VLFNKLIESG-LK-VILVTGRDEETFG--QVTRDNLHNQGFV--GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIW 224 (254)
Q Consensus 151 ell~~L~~~G-~~-i~~vTgR~~e~~r--~~T~~~L~~~G~~--~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~ 224 (254)
-+++++.+.+ +. ++++||-. + +.-..-|+.+|+. +|+=.++.+...-.+-...-...+-+-+++...+.+
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH----~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~V 96 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQH----RDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLV 96 (383)
T ss_pred HHHHHHHhCCCCceEEEEeccc----ccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 4577788776 54 55788876 5 6666778888876 344334432221111111122334445566777899
Q ss_pred EEEcCCcccccccc-------------cCCcEEEe
Q 025360 225 GNIGDQWSDLQGEC-------------TGNRTFKL 246 (254)
Q Consensus 225 ~~IGDq~sDi~ga~-------------~g~r~fkl 246 (254)
++-||+.+-+.|+- +|.|++-.
T Consensus 97 lVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~ 131 (383)
T COG0381 97 LVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDL 131 (383)
T ss_pred EEeCCcchHHHHHHHHHHhCCceEEEecccccCCC
Confidence 99999999888654 67777643
No 274
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=48.75 E-value=26 Score=26.56 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-.+.+++.++.++++|.+++.+|+.+
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 44678999999999999999999987
No 275
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=48.51 E-value=15 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.6
Q ss_pred CCceEEEecCCccccchhhhhh
Q 025360 100 GMDAWILDVDDTCISNVYYYKG 121 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~ 121 (254)
..-.++++-|||.+++..|+..
T Consensus 41 ~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 41 APITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CceEEEEecCCcEEccHHHHhh
Confidence 4678999999999999887753
No 276
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=48.50 E-value=1.3e+02 Score=28.35 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCcccc-----HHHHHHHHHhCCCCC--CCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc---EEEEEcC
Q 025360 160 GLKVILVTGRDEETF-----GQVTRDNLHNQGFVG--YERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR---IWGNIGD 229 (254)
Q Consensus 160 G~~i~~vTgR~~e~~-----r~~T~~~L~~~G~~~--~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~---i~~~IGD 229 (254)
+-++++||++. -.. .+...+.|++.|+.- +...+.-..++..||....-..+.+.+.+.|.. .++.||-
T Consensus 42 ~~r~liVtD~~-v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG 120 (389)
T PRK06203 42 PKKVLVVIDSG-VLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG 120 (389)
T ss_pred CCeEEEEECch-HHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC
Confidence 46899999875 321 245566777778742 333444444556665433344555667777765 7888887
Q ss_pred Cc-ccccccc-----cCCcEEEeCC
Q 025360 230 QW-SDLQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 230 q~-sDi~ga~-----~g~r~fklPN 248 (254)
.. .|+.++- .|...+.+|.
T Consensus 121 Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 121 GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 65 5875544 2677788875
No 277
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=48.12 E-value=57 Score=29.49 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=36.5
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
++--.||+..|.+.|++.|.++.++|... +.....+-++.++...
T Consensus 58 ETDGP~GA~aLa~aL~~lG~~~~ivtd~~---~~~~~~~~~~~~~~~~ 102 (291)
T PF14336_consen 58 ETDGPPGAAALARALQALGKEVVIVTDER---CAPVVKAAVRAAGLQG 102 (291)
T ss_pred CCCChHHHHHHHHHHHHcCCeEEEEECHH---HHHHHHHHHHHHhhCc
Confidence 45678999999999999999999999755 4666677777777753
No 278
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=48.06 E-value=42 Score=30.48 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHHHC-CC-eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCC-CCCCcccHHHHHHHHHHcCCcEEE
Q 025360 149 VLVLFNKLIES-GL-KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADK-GKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 149 ~~ell~~L~~~-G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~-~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
..-+++.|++. ++ ..+++||+. .....+.++.+|++.-..+.+.+.+.. .+........+.+.+.+..++++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~ 91 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQH----REMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVL 91 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCC----HHHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34567778775 44 357899998 455566666788862122333321110 010011123455566778889999
Q ss_pred EEcCCcccccccc
Q 025360 226 NIGDQWSDLQGEC 238 (254)
Q Consensus 226 ~IGDq~sDi~ga~ 238 (254)
..||..+-+.|+.
T Consensus 92 ~~gd~~~~la~a~ 104 (365)
T TIGR00236 92 VQGDTTTTLAGAL 104 (365)
T ss_pred EeCCchHHHHHHH
Confidence 9999877665444
No 279
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=47.57 E-value=50 Score=25.63 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.+|...++++.++++|+.++.||..+ .+...+++++.+++
T Consensus 47 ~~~~l~~~~~~~~~~~v~vi~vs~d~----~~~~~~~~~~~~~~ 86 (149)
T cd03018 47 ELCALRDSLELFEAAGAEVLGISVDS----PFSLRAWAEENGLT 86 (149)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCC----HHHHHHHHHhcCCC
Confidence 56777788889999999999999766 45677888888876
No 280
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=47.27 E-value=13 Score=27.04 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.0
Q ss_pred CceEEEecCCccccchhhhhh
Q 025360 101 MDAWILDVDDTCISNVYYYKG 121 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~ 121 (254)
...++++-|||.+++..|+..
T Consensus 39 ~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred ccEEEEecCCcEEccHHHHhh
Confidence 578999999999999887753
No 281
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=46.34 E-value=41 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
.-++-++-++-+.+++.+++++++|=.. + ..+.+.+.|.++|+.+
T Consensus 129 ~v~V~~~d~le~~v~~~dv~iaiLtVPa-~-~AQ~vad~Lv~aGVkG 173 (211)
T COG2344 129 DVPVYDLDDLEKFVKKNDVEIAILTVPA-E-HAQEVADRLVKAGVKG 173 (211)
T ss_pred CeeeechHHHHHHHHhcCccEEEEEccH-H-HHHHHHHHHHHcCCce
Confidence 3677888899999999999999999866 4 3567788999999975
No 282
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=45.49 E-value=45 Score=27.94 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHH
Q 025360 79 DVELVVEQILCYVNEVVLSG-DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI 157 (254)
Q Consensus 79 d~~~v~~~a~~y~~~~~~~~-~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~ 157 (254)
+...+.+||..+++.++..+ .....+++|+...-..+ .+. ....+..++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~~---------------~~~-----------~~~~~~~f~~~v~ 118 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGNS---------------KAA-----------NTSAILAFMDTIK 118 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCCC---------------HHH-----------HHHHHHHHHHHHH
Confidence 45567888888877665321 11235789999742111 111 1234678999999
Q ss_pred HCCCeEEEEeCCC
Q 025360 158 ESGLKVILVTGRD 170 (254)
Q Consensus 158 ~~G~~i~~vTgR~ 170 (254)
+.|++.+|=|++.
T Consensus 119 ~~G~~~~iYt~~~ 131 (196)
T cd06415 119 DAGYKPMLYSYKP 131 (196)
T ss_pred HhCCCcEEEecHH
Confidence 9999999999976
No 283
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=45.42 E-value=36 Score=25.70 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
......+.++.++++|.+++.+|+..
T Consensus 65 ~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 65 ETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred cchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 44677889999999999999999887
No 284
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=45.12 E-value=90 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=21.4
Q ss_pred CcEEEEEcCCcccccccccCCcEEEeCCC
Q 025360 221 YRIWGNIGDQWSDLQGECTGNRTFKLPNP 249 (254)
Q Consensus 221 y~i~~~IGDq~sDi~ga~~g~r~fklPNp 249 (254)
...++++||+.+|+.-.......|..-|.
T Consensus 194 ~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 194 AIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 45699999999999877744466666553
No 285
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=44.99 E-value=62 Score=26.69 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 025360 79 DVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIE 158 (254)
Q Consensus 79 d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~ 158 (254)
....+.+||..+++.+.. .+..+++|++.+.. ......+..+++++++
T Consensus 65 ~~~~a~~eA~~f~~~~~~---~~~~~~lD~E~~~~-----------------------------~~~~~~~~~f~~~v~~ 112 (177)
T cd06523 65 STADAKAEARDFYNRANK---KPTFYVLDVEVTSM-----------------------------SDMNAGVQAFISELRR 112 (177)
T ss_pred CHHHHHHHHHHHHHHhcC---CCceEEEeeccCCc-----------------------------chHHHHHHHHHHHHHH
Confidence 455677888888766553 34568899997422 1123457889999999
Q ss_pred CCC-eEEEEeCCC
Q 025360 159 SGL-KVILVTGRD 170 (254)
Q Consensus 159 ~G~-~i~~vTgR~ 170 (254)
+|. ++++=|++.
T Consensus 113 ~g~~~~~lYt~~~ 125 (177)
T cd06523 113 LGAKKVGLYIGHH 125 (177)
T ss_pred ccCCcEEEEchHH
Confidence 886 677888876
No 286
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=44.72 E-value=1.5e+02 Score=27.56 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=54.5
Q ss_pred HHHHCC-CeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc---EEEEEc
Q 025360 155 KLIESG-LKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR---IWGNIG 228 (254)
Q Consensus 155 ~L~~~G-~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~---i~~~IG 228 (254)
.+++.| -+++++|++. -. ..+...+.|++.|+. +...++.+ ....|+ ..-...+...+.+.|.+ .++.||
T Consensus 17 ~l~~~g~~rvlvVtd~~-v~~~~~~~l~~~L~~~g~~-~~~~~~~~-~e~~k~-~~~v~~~~~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 17 YLPELNADKYLLVTDSN-VEDLYGHRLLEYLREAGAP-VELLSVPS-GEEHKT-LSTLSDLVERALALGATRRSVIVALG 92 (355)
T ss_pred HHHhcCCCeEEEEECcc-HHHHHHHHHHHHHHhcCCc-eEEEEeCC-CCCCCC-HHHHHHHHHHHHHcCCCCCcEEEEEC
Confidence 445555 5789999875 22 234566788888886 33333332 222221 12233445566667876 788888
Q ss_pred CCc-ccccccc-----cCCcEEEeCC
Q 025360 229 DQW-SDLQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 229 Dq~-sDi~ga~-----~g~r~fklPN 248 (254)
... .|+.+.- .|...+.+|.
T Consensus 93 GGsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 GGVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred CcHHHHHHHHHHHHhccCCCEEEecC
Confidence 854 6887654 3778888885
No 287
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=44.63 E-value=42 Score=27.78 Aligned_cols=63 Identities=21% Similarity=-0.017 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-
Q 025360 81 ELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES- 159 (254)
Q Consensus 81 ~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~- 159 (254)
....+||..+++.++..+ +...+++|+.++--.+ . ......+.++++.++++
T Consensus 64 ~~a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~~---------------~-----------~~~~~~~~~f~~~v~~~~ 116 (184)
T cd06525 64 SNPEEQAENFYNTIKGKK-MDLKPALDVEVNFGLS---------------K-----------DELNDYVLRFIEEFEKLS 116 (184)
T ss_pred CCHHHHHHHHHHhccccC-CCCCeEEEEecCCCCC---------------H-----------HHHHHHHHHHHHHHHHHH
Confidence 446689998887776432 2335789999853111 0 11224668899999998
Q ss_pred CCeEEEEeCCC
Q 025360 160 GLKVILVTGRD 170 (254)
Q Consensus 160 G~~i~~vTgR~ 170 (254)
|+++++=|+..
T Consensus 117 G~~~~iY~~~~ 127 (184)
T cd06525 117 GLKVGIYTYTS 127 (184)
T ss_pred CCCeEEEecHH
Confidence 99999999987
No 288
>PRK12342 hypothetical protein; Provisional
Probab=44.50 E-value=1.9e+02 Score=25.66 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=41.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHH-HHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEc
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQV-TRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIG 228 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~-T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IG 228 (254)
+|.--+|++.|.+|..+|=-+ +..... +.+.--..|-+. -+++.++...+.+...--..+-..+++.||+.++ .|
T Consensus 41 lE~AlrLk~~g~~Vtvls~Gp-~~a~~~~l~r~alamGaD~--avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl-~G 116 (254)
T PRK12342 41 IEAASQLATDGDEIAALTVGG-SLLQNSKVRKDVLSRGPHS--LYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLL-FG 116 (254)
T ss_pred HHHHHHHhhcCCEEEEEEeCC-ChHhHHHHHHHHHHcCCCE--EEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEE-Ec
Confidence 444444556788888888877 422222 223233345542 2333322222221111112333445556776655 78
Q ss_pred CCcccccccc
Q 025360 229 DQWSDLQGEC 238 (254)
Q Consensus 229 Dq~sDi~ga~ 238 (254)
.+-.|-..+.
T Consensus 117 ~~s~D~~tgq 126 (254)
T PRK12342 117 EGSGDLYAQQ 126 (254)
T ss_pred CCcccCCCCC
Confidence 8888876665
No 289
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.36 E-value=1.2e+02 Score=29.86 Aligned_cols=98 Identities=23% Similarity=0.311 Sum_probs=57.2
Q ss_pred HHHH-HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC---CcE
Q 025360 148 GVLV-LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG---YRI 223 (254)
Q Consensus 148 g~~e-ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G---y~i 223 (254)
|+++ +-+.+++.|.+++++|........+...+.|++.|+. .+..++. +.+..|+.. ....+...+.+.| ...
T Consensus 196 g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v~~~v~p-~~E~~ksl~-~v~~~~~~l~~~~~~r~D~ 272 (542)
T PRK14021 196 GAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-VSDIVIP-DAEAGKTIE-VANGIWQRLGNEGFTRSDA 272 (542)
T ss_pred ChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-eEEEEeC-CCcccCCHH-HHHHHHHHHHhcCCCCCcE
Confidence 4433 3344556678888877765122335566788888986 3333333 333333321 2223334455554 556
Q ss_pred EEEEcC-Ccccccccc-----cCCcEEEeCC
Q 025360 224 WGNIGD-QWSDLQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 224 ~~~IGD-q~sDi~ga~-----~g~r~fklPN 248 (254)
++.||- +..|+.+.- .|.+.+.+|.
T Consensus 273 IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 273 IVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred EEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 888888 456887665 4899999997
No 290
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=44.27 E-value=32 Score=26.01 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 147 PGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 147 pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
+.+.++++.++++|.+++.+|++.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 678899999999999999999988
No 291
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=44.26 E-value=61 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.++...++.+.+.++|+.++.||..+ .+...+++++.|++
T Consensus 42 ~~~~l~~~~~~~~~~~~~vv~is~d~----~~~~~~~~~~~~~~ 81 (140)
T cd03017 42 EACDFRDLYEEFKALGAVVIGVSPDS----VESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHhCCC
Confidence 35667778888888999999999766 56677888888886
No 292
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=43.31 E-value=50 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.412 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC
Q 025360 142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~ 198 (254)
..++.||=...=+.|++.|++++++|..+ ... ..+.|++.||- | +++..+
T Consensus 69 PN~a~PGP~~ARE~l~~~~iP~IvI~D~p-~~K---~~d~l~~~g~G-Y--Iivk~D 118 (277)
T PRK00994 69 PNPAAPGPKKAREILKAAGIPCIVIGDAP-GKK---VKDAMEEQGLG-Y--IIVKAD 118 (277)
T ss_pred CCCCCCCchHHHHHHHhcCCCEEEEcCCC-ccc---hHHHHHhcCCc-E--EEEecC
Confidence 45666776666667889999999999998 332 33899999995 4 566554
No 293
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=42.53 E-value=1.9e+02 Score=23.62 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=28.1
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
..|...++++.+++.|+.+.+.||-. . ....+.|.+.|+
T Consensus 75 l~~~l~~li~~~~~~g~~v~i~TNg~-~---~~~l~~l~~~g~ 113 (191)
T TIGR02495 75 LQAGLPDFLRKVRELGFEVKLDTNGS-N---PRVLEELLEEGL 113 (191)
T ss_pred CcHhHHHHHHHHHHCCCeEEEEeCCC-C---HHHHHHHHhcCC
Confidence 34557889999999999999999987 3 233344555674
No 294
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.23 E-value=35 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-.+.+.++++.++++|.+++.+|+.+
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 356788999999999999999999988
No 295
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=41.85 E-value=1.7e+02 Score=26.88 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHCC-CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCC-
Q 025360 153 FNKLIESG-LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQ- 230 (254)
Q Consensus 153 l~~L~~~G-~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq- 230 (254)
-+.+++.| -++++||++. -.......+.|++.|+. + .++.+- ...|...--....+.+.+.+.+.++.||-.
T Consensus 15 ~~~~~~~g~~~~livtd~~-~~~~~~~~~~l~~~~~~-~--~~~~~~--~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 88 (367)
T cd08182 15 PSLLKGLGGKRVLLVTGPR-SAIASGLTDILKPLGTL-V--VVFDDV--QPNPDLEDLAAGIRLLREFGPDAVLAVGGGS 88 (367)
T ss_pred HHHHHhcCCCeEEEEeCch-HHHHHHHHHHHHHcCCe-E--EEEcCc--CCCcCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 34455666 4799999987 44456667788888864 2 222221 111222222334445566778888889884
Q ss_pred ccccccc
Q 025360 231 WSDLQGE 237 (254)
Q Consensus 231 ~sDi~ga 237 (254)
.-|+..+
T Consensus 89 ~~D~aK~ 95 (367)
T cd08182 89 VLDTAKA 95 (367)
T ss_pred HHHHHHH
Confidence 4576543
No 296
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.83 E-value=58 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHCCC--eEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 147 PGVLVLFNKLIESGL--KVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 147 pg~~ell~~L~~~G~--~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..+++++...++.|. +|++.=+|| ..+-..+.+.|++.|++
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP-~~eG~~~ak~L~~~gI~ 172 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRP-RGEGRIMAKELRQSGIP 172 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCC-cchHHHHHHHHHHcCCc
Confidence 457888998888885 999999999 88889999999999986
No 297
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=41.61 E-value=73 Score=30.51 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
...+.+.-++..|++.|-.|.+++.++ -..++.+...|.+.|++-
T Consensus 56 Hl~~~Ta~l~~~L~~~GA~v~~~~~np-~Stqd~vaaaL~~~gi~v 100 (425)
T PRK05476 56 HMTIQTAVLIETLKALGAEVRWASCNP-FSTQDDVAAALAAAGIPV 100 (425)
T ss_pred eccccHHHHHHHHHHcCCEEEEEeCCC-cccCHHHHHHHHHCCceE
Confidence 345667789999999999999999998 788899999999999984
No 298
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.41 E-value=41 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-.+.+.+.++.++++|.+++.+|+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCC
Confidence 45778899999999999999999988
No 299
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.28 E-value=1.8e+02 Score=23.03 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc--cccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 149 VLVLFNKLIESGLKVILVTGRDE--ETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~--e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
..++++..++.+..++.+|+=.. ...-..+.+.|++.|+.+ ..+++.+.-.-+.. -....+..|.+.|++-+.-
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~---d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQ---DFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC-CeEEEECCCCCChh---hhHHHHHHHHHcCCCEEEC
Confidence 45667777888888888887541 223456777888889864 56666664211110 1122345678888877766
Q ss_pred EcCCcccc
Q 025360 227 IGDQWSDL 234 (254)
Q Consensus 227 IGDq~sDi 234 (254)
-|+...++
T Consensus 115 pgt~~~~i 122 (128)
T cd02072 115 PGTPPEEA 122 (128)
T ss_pred cCCCHHHH
Confidence 66665554
No 300
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=41.25 E-value=55 Score=25.80 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred chHHH-HHHHHHHHCCCeEEEEeCCC
Q 025360 146 IPGVL-VLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 146 ~pg~~-ell~~L~~~G~~i~~vTgR~ 170 (254)
++|++ ..++-|.++|+.||.+|.-+
T Consensus 76 ltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 76 LTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred cchhhhhhhhhHhhCCccEEEEEecc
Confidence 34444 45778899999999999876
No 301
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=51 Score=29.54 Aligned_cols=57 Identities=7% Similarity=0.152 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-CCC
Q 025360 128 PYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-GFV 188 (254)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G~~ 188 (254)
+|.....++.+.+.....-.|+.+++..|+.+++++++.|..- -+.++..+++. ++.
T Consensus 122 ~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGi----gdiiEev~~q~~~~~ 179 (298)
T KOG3128|consen 122 GFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGI----GDIIEEVTRQKLVLH 179 (298)
T ss_pred CcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecch----HHHHHHHHHHHhccC
Confidence 4666677777777777788999999999999999999999988 56666666543 444
No 302
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=40.71 E-value=81 Score=28.88 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
..+|...+++++|+++|+++++...
T Consensus 61 ~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEec
Confidence 3567888999999999999887654
No 303
>PRK04531 acetylglutamate kinase; Provisional
Probab=40.68 E-value=1.4e+02 Score=28.28 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEE
Q 025360 86 QILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVIL 165 (254)
Q Consensus 86 ~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~ 165 (254)
++..|++..... ...+.+|+=|+|.++.. .++...+-+..|++.|.++++
T Consensus 22 e~~~~l~~F~~~-~~~~~~VIKiGG~~l~~-----------------------------~~~~l~~dla~L~~~G~~~Vl 71 (398)
T PRK04531 22 EISQYLKRFSQL-DAERFAVIKVGGAVLRD-----------------------------DLEALASSLSFLQEVGLTPIV 71 (398)
T ss_pred hhHHHHHHHhCc-CCCcEEEEEEChHHhhc-----------------------------CHHHHHHHHHHHHHCCCcEEE
Confidence 456676665532 33578888899977753 135556667788999999999
Q ss_pred EeCCCccccHHHHHHHHHhCCCCC
Q 025360 166 VTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 166 vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
|=|-. ....+.|++.|++.
T Consensus 72 VHGgg-----pqI~~~l~~~gie~ 90 (398)
T PRK04531 72 VHGAG-----PQLDAELDAAGIEK 90 (398)
T ss_pred EECCC-----HHHHHHHHHcCCCc
Confidence 98876 34557899999974
No 304
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=40.38 E-value=80 Score=30.11 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
..+.+.-|+..|++.|-+|.+.++++ -..++.+...|.+.|++-
T Consensus 45 l~~~ta~l~~~L~~~GA~v~~~~~np-~stqd~vaa~l~~~gi~v 88 (413)
T cd00401 45 MTVQTAVLIETLVALGAEVRWSSCNI-FSTQDHAAAAIAAAGIPV 88 (413)
T ss_pred chHHHHHHHHHHHHcCCEEEEEcCCC-ccchHHHHHHHHhcCceE
Confidence 44556788999999999999999998 888899999999999974
No 305
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=39.90 E-value=29 Score=29.99 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.+++.-++..|.. .+++|||+.+|+.........+..-|
T Consensus 191 ~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~n 231 (256)
T TIGR00099 191 SALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGN 231 (256)
T ss_pred HHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecC
Confidence 4455555666654 59999999999988774334455444
No 306
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.76 E-value=49 Score=25.16 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC--ccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD--EETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~--~e~~r~~T~~~L~~~G~~ 188 (254)
.+|...++.+.++++|+.++.++... .+...+...+++++.|++
T Consensus 41 ~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 41 TLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred HHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 46778888888888899999887521 023367778899999997
No 307
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.73 E-value=44 Score=25.39 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-.+.+++.++.++++|.+++.+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45778899999999999999999865
No 308
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=39.00 E-value=1.1e+02 Score=28.22 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
..+|...+++++|+++|+++++...
T Consensus 61 ~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 61 GGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEec
Confidence 4578889999999999999987653
No 309
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=38.85 E-value=2.4e+02 Score=25.91 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHCCCeEEEEeCCCcc-c---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcC
Q 025360 154 NKLIESGLKVILVTGRDEE-T---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGD 229 (254)
Q Consensus 154 ~~L~~~G~~i~~vTgR~~e-~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGD 229 (254)
+.+++.|-+++++|++. - . ..+...+.|++.|+. + .++. +..+.|...--....+.+.+.+.+.++.||-
T Consensus 19 ~~~~~~g~r~lvVt~~~-~~~~~g~~~~v~~~L~~~g~~-~--~~~~--~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 92 (357)
T cd08181 19 EELAALGKRALIVTGKS-SAKKNGSLDDVTKALEELGIE-Y--EIFD--EVEENPSLETIMEAVEIAKKFNADFVIGIGG 92 (357)
T ss_pred HHHHHcCCEEEEEeCCc-hHhhcCcHHHHHHHHHHcCCe-E--EEeC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45566788999999976 3 2 235677788888885 3 1222 1111122222233444566778888888887
Q ss_pred Cc-ccccc
Q 025360 230 QW-SDLQG 236 (254)
Q Consensus 230 q~-sDi~g 236 (254)
.- -|...
T Consensus 93 GSviD~aK 100 (357)
T cd08181 93 GSPLDAAK 100 (357)
T ss_pred chHHHHHH
Confidence 54 47654
No 310
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=38.76 E-value=2.2e+02 Score=24.29 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=36.0
Q ss_pred HHHHHHHHCC---CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 151 VLFNKLIESG---LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 151 ell~~L~~~G---~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
.+++.+++.+ .-++++|+|+ .....+..+++|++. . .+...... +...+-..+.+.+.+.+.+.++.+
T Consensus 15 al~~~~~~~~l~~~i~~visn~~----~~~~~~~A~~~gIp~-~--~~~~~~~~--~~~~~~~~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 15 AIHDACLDGRVNGDVVVVVTNKP----GCGGAEYARENGIPV-L--VYPKTKGE--PDGLSPDELVDALRGAGVDFVLLA 85 (207)
T ss_pred HHHHHHHcCCCCeEEEEEEEeCC----CChHHHHHHHhCCCE-E--EeccccCC--CcccchHHHHHHHHhcCCCEEEEe
Confidence 3455555543 3456888887 344456777889983 1 11111110 112233445556777666665554
Q ss_pred c
Q 025360 228 G 228 (254)
Q Consensus 228 G 228 (254)
|
T Consensus 86 g 86 (207)
T PLN02331 86 G 86 (207)
T ss_pred C
Confidence 4
No 311
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=38.53 E-value=39 Score=31.78 Aligned_cols=65 Identities=34% Similarity=0.541 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCeEEEEeCCCccc---------------------cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccH
Q 025360 151 VLFNKLIESGLKVILVTGRDEET---------------------FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYK 209 (254)
Q Consensus 151 ell~~L~~~G~~i~~vTgR~~e~---------------------~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK 209 (254)
-+-+.++.+|.+++++||-+ +. ..+...+.++++|+. |+ .++|..+...+ ..-
T Consensus 27 v~aR~~r~~G~~v~~~tGtD-ehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~-~D-~F~rTt~~~h~---~~v 100 (391)
T PF09334_consen 27 VLARYLRLRGHDVLFVTGTD-EHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNIS-YD-RFIRTTDDRHK---EFV 100 (391)
T ss_dssp HHHHHHHHTT-EEEEEEEEE--SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----S-EEEETTSHHHH---HHH
T ss_pred HHHHHHhhcccceeeEEecc-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-Cc-ceeCCCCHHHH---HHH
Confidence 44578889999999999998 42 123345677888887 54 56776442221 233
Q ss_pred HHHHHHHHHcCC
Q 025360 210 SEIRKQLLEEGY 221 (254)
Q Consensus 210 ~~~r~~l~~~Gy 221 (254)
..+.+.|.+.|+
T Consensus 101 ~~i~~~L~~~G~ 112 (391)
T PF09334_consen 101 QEIFKRLYDNGY 112 (391)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCc
Confidence 556777888886
No 312
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=38.45 E-value=40 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=23.7
Q ss_pred EEEEEcCCcccccccccCCcEEEeCCCC
Q 025360 223 IWGNIGDQWSDLQGECTGNRTFKLPNPM 250 (254)
Q Consensus 223 i~~~IGDq~sDi~ga~~g~r~fklPNp~ 250 (254)
.++.+||+.+|+.--.+...-+.+|+|.
T Consensus 228 ~tiaLGDspND~~mLe~~D~~vvi~~~~ 255 (302)
T PRK12702 228 KALGIGCSPPDLAFLRWSEQKVVLPSPI 255 (302)
T ss_pred eEEEecCChhhHHHHHhCCeeEEecCCC
Confidence 6889999999998777777888888874
No 313
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=38.42 E-value=2e+02 Score=25.60 Aligned_cols=84 Identities=18% Similarity=0.027 Sum_probs=48.2
Q ss_pred HHHHHHHHHHH--CCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC-CCCCCCCc-ccHHHHHHHHHHcCCcE
Q 025360 148 GVLVLFNKLIE--SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA-ADKGKNAV-TYKSEIRKQLLEEGYRI 223 (254)
Q Consensus 148 g~~ell~~L~~--~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~-~yK~~~r~~l~~~Gy~i 223 (254)
.++|.--+|++ .|.++..+|--+ +...+. ....-..|.+ +.++-.+ ...+. ++ .--..+...+++.|+.
T Consensus 41 ~AvEeAlrLke~~~~~eV~vlt~Gp-~~a~~~-lr~aLAmGaD---raili~d~~~~~~-d~~~ta~~Laa~~~~~~~~- 113 (260)
T COG2086 41 NAVEEALRLKEKGYGGEVTVLTMGP-PQAEEA-LREALAMGAD---RAILITDRAFAGA-DPLATAKALAAAVKKIGPD- 113 (260)
T ss_pred HHHHHHHHhhccCCCceEEEEEecc-hhhHHH-HHHHHhcCCC---eEEEEecccccCc-cHHHHHHHHHHHHHhcCCC-
Confidence 45555556777 678899999987 433332 2233345664 4444433 22221 22 1113344556677777
Q ss_pred EEEEcCCcccccccc
Q 025360 224 WGNIGDQWSDLQGEC 238 (254)
Q Consensus 224 ~~~IGDq~sDi~ga~ 238 (254)
.+..|+|-.|-..+.
T Consensus 114 LVl~G~qa~D~~t~q 128 (260)
T COG2086 114 LVLTGKQAIDGDTGQ 128 (260)
T ss_pred EEEEecccccCCccc
Confidence 455899999887776
No 314
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=38.39 E-value=45 Score=27.26 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-..+.+.+.++.++++|.+++.+|+..
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3456899999999999999999999987
No 315
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=38.29 E-value=1.6e+02 Score=22.21 Aligned_cols=69 Identities=25% Similarity=0.246 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEE
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
.+...++.+.|.+.|++|+ .|. .|.+.|++.|++. ..+....+. +... +..+...+.+..+..++
T Consensus 12 k~~~~~~a~~l~~~G~~i~-aT~--------gTa~~L~~~gi~~--~~v~~~~~~-~~~~---~~~i~~~i~~~~idlVI 76 (116)
T cd01423 12 KPELLPTAQKLSKLGYKLY-ATE--------GTADFLLENGIPV--TPVAWPSEE-PQND---KPSLRELLAEGKIDLVI 76 (116)
T ss_pred chhHHHHHHHHHHCCCEEE-Ecc--------HHHHHHHHcCCCc--eEeeeccCC-CCCC---chhHHHHHHcCCceEEE
Confidence 4677889999999999996 443 3558899999972 333222111 1100 12344456666667788
Q ss_pred EEcC
Q 025360 226 NIGD 229 (254)
Q Consensus 226 ~IGD 229 (254)
++=+
T Consensus 77 n~~~ 80 (116)
T cd01423 77 NLPS 80 (116)
T ss_pred ECCC
Confidence 7643
No 316
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=38.28 E-value=1.5e+02 Score=27.44 Aligned_cols=87 Identities=17% Similarity=0.287 Sum_probs=51.9
Q ss_pred CCCeEEEEeCCCc-cccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC----cEEEEEcC-Ccc
Q 025360 159 SGLKVILVTGRDE-ETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY----RIWGNIGD-QWS 232 (254)
Q Consensus 159 ~G~~i~~vTgR~~-e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy----~i~~~IGD-q~s 232 (254)
.+-+++++|++.- ....+...+.|++.|+. +..+++.+ .+..|+ ..--..+...+.+.|. ..++.||. +..
T Consensus 25 ~~~~~lvVtd~~v~~~~~~~v~~~l~~~g~~-~~~~v~~~-~e~~~s-~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~ 101 (354)
T cd08199 25 GSGRRFVVVDQNVDKLYGKKLREYFAHHNIP-LTILVLRA-GEAAKT-MDTVLKIVDALDAFGISRRREPVLAIGGGVLT 101 (354)
T ss_pred CCCeEEEEECccHHHHHHHHHHHHHHhcCCc-eEEEEeCC-CCCCCC-HHHHHHHHHHHHHcCCCCCCCEEEEECCcHHH
Confidence 3468899998751 11234566788888886 43333443 223222 1222333445556665 77888998 556
Q ss_pred cccccc-----cCCcEEEeCC
Q 025360 233 DLQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 233 Di~ga~-----~g~r~fklPN 248 (254)
|+.++- .|.+.+.+|.
T Consensus 102 D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 102 DVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHhcCCCCEEEEcC
Confidence 886654 3778888886
No 317
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=38.06 E-value=35 Score=24.70 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..++.+.|.+.|++|+ .|. .|.++|++.|++
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~--------gTa~~L~~~Gi~ 32 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG--------GTAKFLREAGLP 32 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc--------HHHHHHHHCCCc
Confidence 4678889999999995 554 245788889986
No 318
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=37.88 E-value=88 Score=24.58 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE 191 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~ 191 (254)
++...++.+.++++|+.++-||-.+ .+...+++++.|++ |.
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~----~~~~~~~~~~~~~~-~~ 90 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDK----PEKLSRFAEKELLN-FT 90 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHhCCC-Ce
Confidence 3456678888899999999998766 57777899999986 53
No 319
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=37.18 E-value=53 Score=27.36 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-C
Q 025360 82 LVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-G 160 (254)
Q Consensus 82 ~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G 160 (254)
...+||..|++.++....+...+++|+++.-..+. . ......+..++++++++ |
T Consensus 69 ~a~~qA~~f~~~~~~~~~~~~~~~lDvE~~~~~~~--------------~-----------~~~~~~~~~f~~~v~~~~g 123 (194)
T cd06524 69 DPKQQADNFLNTVKLLGPGDLPPVLDVEWDGRKSS--------------A-----------KQIQEGVLEWLDAVEKATG 123 (194)
T ss_pred CHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCCC--------------H-----------HHHHHHHHHHHHHHHHHHC
Confidence 35578888877665422223345799988432110 0 11235678889999875 8
Q ss_pred CeEEEEeCCC
Q 025360 161 LKVILVTGRD 170 (254)
Q Consensus 161 ~~i~~vTgR~ 170 (254)
+++.+=|++.
T Consensus 124 ~~~~iY~~~~ 133 (194)
T cd06524 124 VKPIIYTNPS 133 (194)
T ss_pred CCeEEEEcHH
Confidence 9999999876
No 320
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=36.87 E-value=92 Score=23.67 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-CCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-GFV 188 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G~~ 188 (254)
+|...++++.+++.|+.++.||..+ .+...++.++. +++
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~----~~~~~~~~~~~~~~~ 81 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS----PFSHKAWAEKEGGLN 81 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHhcccCCC
Confidence 6777888888988999999999876 56677888888 554
No 321
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.80 E-value=1e+02 Score=31.87 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
..-+|....++++|+++|++++++-+=. -......-+-+.+.|+
T Consensus 317 ~~~FP~pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 317 PDRFPDPKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGY 360 (772)
T ss_pred cccCCCHHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCe
Confidence 4567777799999999999999888754 4444455566667776
No 322
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.70 E-value=49 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEe
Q 025360 146 IPGVLVLFNKLIESGLKVILVT 167 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vT 167 (254)
-+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4778899999999999999988
No 323
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.44 E-value=1.8e+02 Score=26.27 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
...+|...+++++|+++|+++++...
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 34778889999999999999987554
No 324
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=36.38 E-value=35 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.+++.-++..|. ..++.|||+.+|+.--......|..-|
T Consensus 189 ~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 189 SAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp HHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred HHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcC
Confidence 455555566676 469999999999976654445565544
No 325
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=36.19 E-value=21 Score=30.82 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=13.1
Q ss_pred ceEEEecCCccccch
Q 025360 102 DAWILDVDDTCISNV 116 (254)
Q Consensus 102 ~avIfDIDgTll~~~ 116 (254)
++|++||.||+.+-+
T Consensus 2 ~~~l~diegt~~~is 16 (220)
T TIGR01691 2 KNVLLDIEGTTGSIS 16 (220)
T ss_pred CEEEEecCCCcccHH
Confidence 689999999999854
No 326
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=36.12 E-value=87 Score=28.43 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHCCCeEEEEe
Q 025360 145 AIPGVLVLFNKLIESGLKVILVT 167 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vT 167 (254)
.+|...++++.|+++|+++++..
T Consensus 62 ~FPdp~~~i~~l~~~g~k~~~~~ 84 (317)
T cd06600 62 RFPEPKKLIDELHKRNVKLVTIV 84 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEe
Confidence 56778899999999999988664
No 327
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=36.08 E-value=2.7e+02 Score=25.22 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 147 PGVLVLFNKLIESG-LKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 147 pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.-..++++.+++.+ .+-+.+..|+ +.......+.|+++|..
T Consensus 88 ~~~~~i~~~l~~~~~~~~i~~esrp-d~i~~e~L~~l~~aG~~ 129 (313)
T TIGR01210 88 ETRNYIFEKIAQRDNLKEVVVESRP-EFIDEEKLEELRKIGVN 129 (313)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeCC-CcCCHHHHHHHHHcCCC
Confidence 34467777777776 5556777798 77777777778888874
No 328
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=36.06 E-value=53 Score=26.38 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-.+.+.+.++.++++|.+++.+|+.+
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46788999999999999999999987
No 329
>PRK10976 putative hydrolase; Provisional
Probab=36.03 E-value=31 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.++++-++..|.. .+++|||+.||+.--......|...|
T Consensus 193 ~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~N 233 (266)
T PRK10976 193 HALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGN 233 (266)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecC
Confidence 4555555667765 49999999999976552224444444
No 330
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=35.97 E-value=1.4e+02 Score=22.23 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec
Q 025360 151 VLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT 197 (254)
Q Consensus 151 ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~ 197 (254)
+....|++.|+++++|+--+ .+..+++.+..+++ +. ++.-+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~----~~~~~~f~~~~~~p-~~-ly~D~ 44 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGS----PEGIEKFCELTGFP-FP-LYVDP 44 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCC----HHHHHHHHhccCCC-Cc-EEEeC
Confidence 34678889999999999766 43477777778887 44 55544
No 331
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=35.96 E-value=33 Score=22.03 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ 185 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~ 185 (254)
.||-..|++.|+...=||..+ |...++.|.++
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sT----R~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTT----RKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcch----HHHHHHHHHHH
Confidence 467788899999988888888 88888877764
No 332
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=35.85 E-value=51 Score=26.95 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
..-.+.+.++++.++++|.+++.+|+..
T Consensus 85 sG~t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 85 SGETSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3456788999999999999999999987
No 333
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=35.78 E-value=1.5e+02 Score=27.47 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=43.1
Q ss_pred HHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc-cc
Q 025360 155 KLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW-SD 233 (254)
Q Consensus 155 ~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~-sD 233 (254)
.+++.|-+++++|++. -...+.....|++.|+. +. .+ .... .|....-....+...+.+.+.++.||-.- -|
T Consensus 17 ~l~~~~~r~livtd~~-~~~~~~v~~~L~~~g~~-~~-~~-~~~~---~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 89 (374)
T cd08183 17 LAAELGRRVLLVTGAS-SLRAAWLIEALRAAGIE-VT-HV-VVAG---EPSVELVDAAVAEARNAGCDVVIAIGGGSVID 89 (374)
T ss_pred HHHHcCCcEEEEECCc-hHHHHHHHHHHHHcCCe-EE-Ee-cCCC---CcCHHHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 4444478999999987 44555667788888886 32 22 1111 12211122233344556788888888643 46
Q ss_pred ccc
Q 025360 234 LQG 236 (254)
Q Consensus 234 i~g 236 (254)
...
T Consensus 90 ~aK 92 (374)
T cd08183 90 AGK 92 (374)
T ss_pred HHH
Confidence 643
No 334
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=35.10 E-value=39 Score=31.21 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
=-..++++|.++|++|.+ |.|. ...|.+.|+..|++
T Consensus 15 fFk~~I~eL~~~GheV~i-t~R~----~~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLI-TARD----KDETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHHhCCCEEEE-EEec----cchHHHHHHHcCCC
Confidence 345678899999999865 5566 57899999999997
No 335
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=34.69 E-value=2.4e+02 Score=25.69 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=48.5
Q ss_pred CCeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC---cEEEEEcCCc-cc
Q 025360 160 GLKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY---RIWGNIGDQW-SD 233 (254)
Q Consensus 160 G~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy---~i~~~IGDq~-sD 233 (254)
+-+++++|+.. -. ..+...+.|++.|+. +...++.+ ....+ ....-......+.+.+. ..++.||-.- .|
T Consensus 20 ~~~~livtd~~-~~~~~~~~v~~~L~~~g~~-~~~~~~~~-~e~~~-~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D 95 (344)
T TIGR01357 20 PSKLVIITDET-VADLYADKLLEALQALGYN-VLKLTVPD-GEESK-SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGD 95 (344)
T ss_pred CCeEEEEECCc-hHHHHHHHHHHHHHhcCCc-eeEEEeCC-CCCCC-CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHH
Confidence 67899999875 32 234455678888886 32223332 22221 12222334445555555 5788888844 68
Q ss_pred ccccc-----cCCcEEEeCC
Q 025360 234 LQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 234 i~ga~-----~g~r~fklPN 248 (254)
+.++- .|...+.+|.
T Consensus 96 ~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 96 LAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHccCCCEEEecC
Confidence 76554 3677777775
No 336
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=34.60 E-value=3e+02 Score=25.49 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=44.7
Q ss_pred HHHHHHHCCCeEEEEeCCCcc----ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 152 LFNKLIESGLKVILVTGRDEE----TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 152 ll~~L~~~G~~i~~vTgR~~e----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
+-+.+++.|-++++||++. - ...+...+.|++.|+. + .++.+ ..+.|...--......+.+.+.+.++.|
T Consensus 17 l~~~~~~~g~r~livt~~~-~~~~~g~~~~v~~~L~~~~~~-~--~~~~~--v~~~p~~~~v~~~~~~~~~~~~D~Iiav 90 (380)
T cd08185 17 LGEEALKPGKKALIVTGNG-SSKKTGYLDRVIELLKQAGVE-V--VVFDK--VEPNPTTTTVMEGAALAREEGCDFVVGL 90 (380)
T ss_pred HHHHHHhcCCeEEEEeCCC-chhhccHHHHHHHHHHHcCCe-E--EEeCC--ccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3345566678999999875 3 1235667788888886 2 12221 1111222222333344556778888888
Q ss_pred cC-Cccccc
Q 025360 228 GD-QWSDLQ 235 (254)
Q Consensus 228 GD-q~sDi~ 235 (254)
|- +.-|..
T Consensus 91 GGGS~iD~a 99 (380)
T cd08185 91 GGGSSMDTA 99 (380)
T ss_pred CCccHHHHH
Confidence 87 444654
No 337
>PRK13937 phosphoheptose isomerase; Provisional
Probab=34.52 E-value=55 Score=27.27 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-..+.+.+.++.++++|.+++.+|+.+
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356889999999999999999999987
No 338
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=34.29 E-value=1.8e+02 Score=21.06 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=41.1
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~ 179 (254)
..+.+|+|+-++-.- ....+-...++++.++++|.++.++.-++ ...
T Consensus 38 ~~~~vilDls~v~~i---------------------------Dssgl~~L~~l~~~~~~~g~~l~l~~~~~------~v~ 84 (100)
T cd06844 38 AGKTIVIDISALEFM---------------------------DSSGTGVLLERSRLAEAVGGQFVLTGISP------AVR 84 (100)
T ss_pred CCCEEEEECCCCcEE---------------------------cHHHHHHHHHHHHHHHHcCCEEEEECCCH------HHH
Confidence 467899999874321 13345556788899999999999887655 556
Q ss_pred HHHHhCCCCC
Q 025360 180 DNLHNQGFVG 189 (254)
Q Consensus 180 ~~L~~~G~~~ 189 (254)
+.|+..|+..
T Consensus 85 ~~l~~~gl~~ 94 (100)
T cd06844 85 ITLTESGLDK 94 (100)
T ss_pred HHHHHhCchh
Confidence 7788888753
No 339
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=34.28 E-value=87 Score=28.63 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=31.7
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..|...+++++++++|+.+.+.||-. - ..+.+.+.|.+.|+.
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~-l-l~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGV-G-LTEARLDALADAGLD 107 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCc-c-CCHHHHHHHHhCCCC
Confidence 34667789999999999999999875 2 234566778888875
No 340
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.26 E-value=85 Score=24.08 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHHH---HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQVT---RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~T---~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
.+++....+.+-.++.+|+.. +...+.. .+.|++.|.+. -.+++.+... + .....+.+.|++-++.
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~~~-i~i~~GG~~~--------~-~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLS-GGHMTLFPEVIELLRELGAGD-ILVVGGGIIP--------P-EDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccc-hhhHHHHHHHHHHHHhcCCCC-CEEEEECCCC--------H-HHHHHHHHCCCCEEEC
Confidence 366777778888888888887 5444433 44566667752 3456665321 1 2234566788888877
Q ss_pred EcCCccccc
Q 025360 227 IGDQWSDLQ 235 (254)
Q Consensus 227 IGDq~sDi~ 235 (254)
-|..+.|+.
T Consensus 109 ~~~~~~~~~ 117 (122)
T cd02071 109 PGTSIEEII 117 (122)
T ss_pred CCCCHHHHH
Confidence 777766653
No 341
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=34.14 E-value=1.4e+02 Score=25.20 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCeE-EEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEE
Q 025360 148 GVLVLFNKLIESGLKV-ILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 148 g~~ell~~L~~~G~~i-~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
...+.++.++++|+.. ++=+.-. +.+|.-.++...++|+..+..|.-++ ...+.+.+.+.|++.++
T Consensus 76 ~l~~~l~~~~~~g~~~vv~G~i~s-d~~~~~~e~~~~~~gl~~~~PLW~~~-----------~~~ll~e~~~~g~~~~i 142 (194)
T cd01994 76 DLKELLRKLKEEGVDAVVFGAILS-EYQRTRVERVCERLGLEPLAPLWGRD-----------QEELLREMIEAGFKAII 142 (194)
T ss_pred HHHHHHHHHHHcCCCEEEECcccc-HHHHHHHHHHHHHcCCEEEecccCCC-----------HHHHHHHHHHcCCeEEE
Confidence 3445566666667763 3333334 67788888889999997655555332 13456667788887433
No 342
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=34.01 E-value=36 Score=24.94 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+++++.+.|.+.|++|+ .|+ -|.+.|+++|++
T Consensus 1 e~~~~a~~l~~lG~~i~-AT~--------gTa~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIY-ATE--------GTAKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEEE-EEH--------HHHHHHHHTT--
T ss_pred CHHHHHHHHHHCCCEEE-ECh--------HHHHHHHHcCCC
Confidence 46889999999998876 343 456889999998
No 343
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.94 E-value=2.4e+02 Score=22.42 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEE
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
...++++..++.+..++-+|+..... .-..+.+.|++.|+.. ..+++.+...-+. .-....+..+++.|+.-+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~---~d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGK---QDFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC-CEEEecCCcCcCh---hhhHHHHHHHHHcCCCEEE
Confidence 34567778888889999888876222 2455677888889864 2345555321111 0112234567888887666
Q ss_pred EEcCCcccc
Q 025360 226 NIGDQWSDL 234 (254)
Q Consensus 226 ~IGDq~sDi 234 (254)
-=|+.+.++
T Consensus 116 ~pgt~~~~i 124 (134)
T TIGR01501 116 APGTPPEVV 124 (134)
T ss_pred CcCCCHHHH
Confidence 556665554
No 344
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.91 E-value=49 Score=26.05 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
--|.+++.+++.+++|.+++-+||
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 348899999999999999999986
No 345
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=33.35 E-value=25 Score=23.54 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=4.2
Q ss_pred CCCCCCcccccc
Q 025360 31 YSMPGDGASYCL 42 (254)
Q Consensus 31 ~~~~~~~~~~c~ 42 (254)
.|.+.+-+..|+
T Consensus 33 i~sp~~r~KWCR 44 (56)
T PF08138_consen 33 IPSPNDRDKWCR 44 (56)
T ss_dssp SSS-STTSS--S
T ss_pred CCCCCcHHHhhh
Confidence 444444445554
No 346
>PRK10658 putative alpha-glucosidase; Provisional
Probab=33.06 E-value=1.5e+02 Score=30.19 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
..+|.-.+++++|+++|+++++...-. -......-+...+.|+
T Consensus 322 ~~FPdp~~mi~~L~~~G~k~~~~i~P~-i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 322 RTFPDPEGMLKRLKAKGLKICVWINPY-IAQKSPLFKEGKEKGY 364 (665)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEeccCC-cCCCchHHHHHHHCCe
Confidence 356777899999999999999877643 2222233333445555
No 347
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=33.00 E-value=2.5e+02 Score=26.96 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA 199 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~ 199 (254)
--.+++.|+++|+++-+.+..+ +. -.|.+.|-..|+++|+-+..
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d-~~------l~L~~~ge~~YD~LIif~~~ 57 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADD-ES------LSLFKYGERLYDHLIIFPPS 57 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCC-CC------cchhhCChhhcceEEEeCCc
Confidence 4578999999999999999887 32 35778899889999887654
No 348
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.91 E-value=3.3e+02 Score=25.18 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=45.3
Q ss_pred HHHHHHHCC-CeEEEEeCCCccc---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 152 LFNKLIESG-LKVILVTGRDEET---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 152 ll~~L~~~G-~~i~~vTgR~~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
+-+.+++.| -+++++|++. -. ..+...+.|++.|+. + .++. +..+.|....-....+.+.+.+.+.++.|
T Consensus 17 l~~~l~~~g~~~~lvvt~~~-~~~~g~~~~v~~~L~~~g~~-~--~~~~--~v~~~p~~~~v~~~~~~~~~~~~d~IIai 90 (374)
T cd08189 17 LPAAISQLGVKKVLIVTDKG-LVKLGLLDKVLEALEGAGIE-Y--AVYD--GVPPDPTIENVEAGLALYRENGCDAILAV 90 (374)
T ss_pred HHHHHHhcCCCeEEEEeCcc-hhhcccHHHHHHHHHhcCCe-E--EEeC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 345566667 5899999875 32 234566788888885 2 1221 21222222222334445556788888888
Q ss_pred cC-Ccccccc
Q 025360 228 GD-QWSDLQG 236 (254)
Q Consensus 228 GD-q~sDi~g 236 (254)
|- +.-|...
T Consensus 91 GGGS~~D~aK 100 (374)
T cd08189 91 GGGSVIDCAK 100 (374)
T ss_pred CCccHHHHHH
Confidence 87 4456653
No 349
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.81 E-value=1.5e+02 Score=19.87 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccc-HHHHHHHHHhCCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETF-GQVTRDNLHNQGFV 188 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~-r~~T~~~L~~~G~~ 188 (254)
..++++.++++|++.+.+|... .-. -....+..++.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~-~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG-NLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC-cccCHHHHHHHHHHcCCe
Confidence 5688999999999999999987 321 22333444555654
No 350
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=32.76 E-value=69 Score=22.69 Aligned_cols=43 Identities=16% Similarity=0.406 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHCCC-eEEEEeCCC----ccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGL-KVILVTGRD----EETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~-~i~~vTgR~----~e~~r~~T~~~L~~~G~~ 188 (254)
+..-+.+++..++.+|. .+-++||+- ....+....+||.+ ++.
T Consensus 11 A~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~ 58 (83)
T PF01713_consen 11 ALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhc
Confidence 44556677888887775 566999986 35678999999988 776
No 351
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.61 E-value=82 Score=31.30 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccc---------------------HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCc
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEETF---------------------GQVTRDNLHNQGFVGYERLIMRTAADKGKNAV 206 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~~---------------------r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~ 206 (254)
.+--+.++++-+|+.++|+||.+ |.- .+.-.+.++.+++. |+ .+.|..++.+ .
T Consensus 30 ~ADv~aRy~Rl~G~~v~fvtGtD-eHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Is-fD-~F~rTt~~~h---~ 103 (558)
T COG0143 30 AADVYARYLRLRGYEVFFLTGTD-EHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNIS-FD-NFIRTTSPEH---K 103 (558)
T ss_pred HHHHHHHHHHhcCCeEEEEeccC-CCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCc-cc-ccccCCCHHH---H
Confidence 33445678888999999999998 521 22233455566665 43 4555544322 1
Q ss_pred ccHHHHHHHHHHcCC
Q 025360 207 TYKSEIRKQLLEEGY 221 (254)
Q Consensus 207 ~yK~~~r~~l~~~Gy 221 (254)
..-..+...|.+.|+
T Consensus 104 ~~vq~~f~~L~~~G~ 118 (558)
T COG0143 104 ELVQEFFLKLYENGD 118 (558)
T ss_pred HHHHHHHHHHHHCCC
Confidence 334566777877775
No 352
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=32.49 E-value=87 Score=27.73 Aligned_cols=38 Identities=24% Similarity=0.153 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 147 PGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
--.+.|.+.|+++|..+.|++.+. + ..-.+.+++.|++
T Consensus 18 ~Rcl~LA~~l~~~g~~v~f~~~~~-~---~~~~~~i~~~g~~ 55 (279)
T TIGR03590 18 MRCLTLARALHAQGAEVAFACKPL-P---GDLIDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-C---HHHHHHHHHcCCe
Confidence 345667777777888888888876 2 2334566666765
No 353
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=32.00 E-value=3.6e+02 Score=26.21 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCc----ccHHHHHHHH
Q 025360 142 GCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAV----TYKSEIRKQL 216 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~----~yK~~~r~~l 216 (254)
+...-....++++..++.|+ .|-+.||+-.........+.|+.+|.. .++|+=++...++.. +.|. ..+..
T Consensus 120 EPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~---tvYlsFDG~~e~~~~~~~~eIk~-alen~ 195 (475)
T COG1964 120 EPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVN---TVYLSFDGVTPKTNWKNHWEIKQ-ALENC 195 (475)
T ss_pred CccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCc---EEEEecCCCCCCchhhHhhhhHH-HHHHH
Confidence 34455678899999999999 888999987222234567789999964 678877664444332 2333 34445
Q ss_pred HHcCCc-EEE
Q 025360 217 LEEGYR-IWG 225 (254)
Q Consensus 217 ~~~Gy~-i~~ 225 (254)
.+.|.. +++
T Consensus 196 r~~g~~svVL 205 (475)
T COG1964 196 RKAGLPSVVL 205 (475)
T ss_pred HhcCCCcEEE
Confidence 567765 443
No 354
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.96 E-value=3e+02 Score=25.44 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHHCC-CeEEEEeCCCcc---ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDEE---TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~e---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
++-..+++.| -+++++|++. - ...+..++.|++.|+. + .++.+.. ..|...--....+.+.+.+.+.++.
T Consensus 18 ~l~~~l~~~g~~~~lvv~~~~-~~~~~~~~~v~~~L~~~~~~-~--~~f~~v~--~~p~~~~v~~~~~~~~~~~~D~IIa 91 (377)
T cd08176 18 EIGDELKNLGFKKALIVTDKG-LVKIGVVEKVTDVLDEAGID-Y--VIYDGVK--PNPTITNVKDGLAVFKKEGCDFIIS 91 (377)
T ss_pred HHHHHHHHhCCCeEEEECCch-HhhcCcHHHHHHHHHHcCCe-E--EEeCCCC--CCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3445667777 4788898876 3 2355678899988886 2 2232211 1122222233444556678888888
Q ss_pred EcCC-ccccc
Q 025360 227 IGDQ-WSDLQ 235 (254)
Q Consensus 227 IGDq-~sDi~ 235 (254)
||-. .-|..
T Consensus 92 vGGGS~iD~a 101 (377)
T cd08176 92 IGGGSPHDCA 101 (377)
T ss_pred eCCcHHHHHH
Confidence 8873 34543
No 355
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.89 E-value=92 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGR 169 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR 169 (254)
..-.+.++++++...++|++-+++|+-
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 456677888899999999988888864
No 356
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=31.86 E-value=62 Score=26.52 Aligned_cols=64 Identities=22% Similarity=0.148 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC
Q 025360 81 ELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160 (254)
Q Consensus 81 ~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G 160 (254)
..+.+||..+++.++.. .+...+++|+...-..+ ........+.++++.++++|
T Consensus 64 ~~a~~qa~~fi~~~~~~-~~~~~~~lDvE~~~~~~-------------------------~~~~~~~~~~~f~~~~~~~g 117 (186)
T cd00599 64 ANAEAQADNFVNTVPRD-PGSLPLVLDVEDTGGGC-------------------------SAAALAAWLNAFLNEVEALT 117 (186)
T ss_pred CCHHHHHHHHHHHccCc-CCCCCeEEEEecCCCCC-------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 44667888887766643 45667888998743221 01224456788999999997
Q ss_pred -CeEEEEeCCC
Q 025360 161 -LKVILVTGRD 170 (254)
Q Consensus 161 -~~i~~vTgR~ 170 (254)
+++.+-|+..
T Consensus 118 g~~~~iY~~~~ 128 (186)
T cd00599 118 GKKPIIYTSPS 128 (186)
T ss_pred CCceEEEEcHH
Confidence 9999999976
No 357
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=31.84 E-value=1.8e+02 Score=29.49 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=70.0
Q ss_pred chHHHHHhh-hcCCcchHHHHHHHHHHHHHHHHhhh----cCCCCceEEEecCCccccchh--hhhh--hccCCCCCC--
Q 025360 62 QCLRYVESY-MIGGQYDRDVELVVEQILCYVNEVVL----SGDGMDAWILDVDDTCISNVY--YYKG--KRYGCDPYD-- 130 (254)
Q Consensus 62 ~c~~~v~~y-~~~~~Y~~d~~~v~~~a~~y~~~~~~----~~~~~~avIfDIDgTll~~~~--~~~~--~~~g~~~~~-- 130 (254)
.|..-+... ..+..|......+...+..+.+.+.. ...++...+.|+|-|++.+.. ...+ ..+..+.+.
T Consensus 102 ~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~ 181 (635)
T KOG0323|consen 102 SCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVE 181 (635)
T ss_pred HHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhccccccccc
Confidence 444434333 34456766777777777777654321 223345899999999997541 0000 001111110
Q ss_pred --h--HHHHHHHH--hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC-CcEEEecC
Q 025360 131 --P--AGFRAWAL--KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY-ERLIMRTA 198 (254)
Q Consensus 131 --~--~~~~~~~~--~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~-~~lilr~~ 198 (254)
. ..++.... .--.+.-|++.+||+++.+. |.+.+.|=-+ -.+.....+.|.--|.- + ++++-|.+
T Consensus 182 sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~skl-femhVyTmg~-R~YA~~i~~liDP~~~l-F~dRIisrde 253 (635)
T KOG0323|consen 182 SNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKL-FEMHVYTMGT-RDYALEIAKLIDPEGKY-FGDRIISRDE 253 (635)
T ss_pred ccccceeecccCCCceEEEEeCccHHHHHHHHHhh-ceeEEEeccc-hHHHHHHHHHhCCCCcc-ccceEEEecC
Confidence 0 00000000 01246779999999999977 9999998877 33333333344433432 3 35555554
No 358
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=31.80 E-value=1.4e+02 Score=24.94 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHH
Q 025360 79 DVELVVEQILCYVNEVVLSG-DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI 157 (254)
Q Consensus 79 d~~~v~~~a~~y~~~~~~~~-~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~ 157 (254)
....+.+||..+++.++..+ .....+++|+...-.. ......+..++++++
T Consensus 68 ~~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~----------------------------~~~~~~~~~F~~~v~ 119 (192)
T cd06522 68 SAADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSS----------------------------GNATANVNAFWQTMK 119 (192)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCc----------------------------chHHHHHHHHHHHHH
Confidence 35567788888887765322 1223577899873210 112344678999999
Q ss_pred HCCC-eEEEEeCCC
Q 025360 158 ESGL-KVILVTGRD 170 (254)
Q Consensus 158 ~~G~-~i~~vTgR~ 170 (254)
++|+ +.++=|++.
T Consensus 120 ~~g~~~~~iY~~~~ 133 (192)
T cd06522 120 AAGYKNTDVYTSAS 133 (192)
T ss_pred HcCCCCcEEEccHH
Confidence 9998 777777765
No 359
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=31.60 E-value=1.3e+02 Score=27.09 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=58.9
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCC--CCcccHH--HHHHHH
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGK--NAVTYKS--EIRKQL 216 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~k--p~~~yK~--~~r~~l 216 (254)
+....+..++|++++.+.-|..+.+--|-- .+...+.|+.+|+..|.+-+=.+.+.-+| ....|-. .-...+
T Consensus 148 GRk~~fk~IlE~ikevr~MgmEvCvTLGMv----~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nv 223 (380)
T KOG2900|consen 148 GRKSAFKRILEMIKEVRDMGMEVCVTLGMV----DQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNV 223 (380)
T ss_pred cchhHHHHHHHHHHHHHcCCceeeeeeccc----cHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHH
Confidence 556789999999999999999999888877 34555889999999886544333322111 1122322 123345
Q ss_pred HHcCCcE----EEEEcCCcccccc
Q 025360 217 LEEGYRI----WGNIGDQWSDLQG 236 (254)
Q Consensus 217 ~~~Gy~i----~~~IGDq~sDi~g 236 (254)
.+.|..+ ++-.|.+..|-.|
T Consensus 224 r~aGikvCsGGIlGLGE~e~DriG 247 (380)
T KOG2900|consen 224 REAGIKVCSGGILGLGESEDDRIG 247 (380)
T ss_pred HHhcceecccccccccccccceee
Confidence 5677665 3345555555544
No 360
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=31.37 E-value=67 Score=21.39 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHh
Q 025360 5 IKEVLLFLLLAIFSK 19 (254)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (254)
||-..|++++.|.+-
T Consensus 1 MKY~lL~l~l~La~C 15 (55)
T PRK13859 1 MKYCLLCLALALAGC 15 (55)
T ss_pred CchhHHHHHHHHHhc
Confidence 688888888877443
No 361
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=31.18 E-value=2.3e+02 Score=22.37 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCcccc-------HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEETF-------GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG 220 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~~-------r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G 220 (254)
-+..+.+.++..|+++.++..|+ +.. .......+....++.+..++|..+.. +-....+.+.+.+
T Consensus 9 va~al~~la~~lg~~v~v~d~r~-e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~h~-------~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 9 VARALARLAALLGFRVTVVDPRP-ERFPEADEVICIPPDDILEDLEIDPNTAVVMTHDHE-------LDAEALEAALASP 80 (136)
T ss_dssp CHHHHHHHHHHCTEEEEEEES-C-CC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S-CC-------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCEEEEEcCCc-cccCCCCccEecChHHHHhccCCCCCeEEEEcCCch-------hHHHHHHHHHcCC
Confidence 35678888999999999999998 521 12334445666777665565554321 1122233333335
Q ss_pred CcEEEEEcCC
Q 025360 221 YRIWGNIGDQ 230 (254)
Q Consensus 221 y~i~~~IGDq 230 (254)
..-++++|-+
T Consensus 81 ~~YiG~lGS~ 90 (136)
T PF13478_consen 81 ARYIGLLGSR 90 (136)
T ss_dssp -SEEEESS-H
T ss_pred CCEEEeecCc
Confidence 5556666643
No 362
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=31.10 E-value=2.5e+02 Score=21.78 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCeEEEEeCCCc----cccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 151 VLFNKLIESGLKVILVTGRDE----ETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 151 ell~~L~~~G~~i~~vTgR~~----e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
..++.+++...+.+++||-.. ....+...+.|.+.|++ -..+++-... ......-...+.-+.+.|.+-++.
T Consensus 25 ~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~-~~~I~~e~~s---~~T~ena~~~~~~~~~~~~~~i~l 100 (150)
T cd06259 25 AAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP-AEAILLEDRS---TNTYENARFSAELLRERGIRSVLL 100 (150)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCC-HHHeeecCCC---CCHHHHHHHHHHHHHhcCCCeEEE
Confidence 344445555588899999852 22456777899999997 3455543322 111122233345566777777888
Q ss_pred EcCCcccc
Q 025360 227 IGDQWSDL 234 (254)
Q Consensus 227 IGDq~sDi 234 (254)
|-|.++=-
T Consensus 101 VTs~~H~~ 108 (150)
T cd06259 101 VTSAYHMP 108 (150)
T ss_pred ECCHHHHH
Confidence 88877533
No 363
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=30.98 E-value=70 Score=26.79 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDE 171 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~ 171 (254)
---+.+++.++..+++|.+++-+|||++
T Consensus 120 GNS~nVl~Ai~~Ak~~gm~vI~ltG~~G 147 (176)
T COG0279 120 GNSKNVLKAIEAAKEKGMTVIALTGKDG 147 (176)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 3457899999999999999999999993
No 364
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.81 E-value=1.7e+02 Score=20.21 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCc------cccHHHHHHHHHhCCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDE------ETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~------e~~r~~T~~~L~~~G~~ 188 (254)
..|+...|.+.|.++.++..++. +..+....+.|++.|+.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 46778888889999998888872 12355556667777665
No 365
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=30.58 E-value=89 Score=23.77 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 148 g~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..+.+.+.|+++|++|.++|... -. ..+++.|++
T Consensus 14 P~lala~~L~~rGh~V~~~~~~~----~~---~~v~~~Gl~ 47 (139)
T PF03033_consen 14 PFLALARALRRRGHEVRLATPPD----FR---ERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHHTT-EEEEEETGG----GH---HHHHHTT-E
T ss_pred HHHHHHHHHhccCCeEEEeeccc----ce---ecccccCce
Confidence 45678899999999999999976 22 334788887
No 366
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.48 E-value=3.8e+02 Score=24.86 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHHHCC-CeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
++-+.+++.| -+++++|++.-.+ ..+.....|++.|+. + . +.. +....|.........+.+.+.+.+.++.|
T Consensus 20 ~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~-~-~-~~~--~v~~~p~~~~v~~~~~~~~~~~~D~IIai 94 (382)
T PRK10624 20 ALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLA-Y-E-IYD--GVKPNPTIEVVKEGVEVFKASGADYLIAI 94 (382)
T ss_pred HHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCe-E-E-EeC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3345566667 5888999875111 345667789999986 3 2 222 21222222222334445566788888889
Q ss_pred cC-Cccccc
Q 025360 228 GD-QWSDLQ 235 (254)
Q Consensus 228 GD-q~sDi~ 235 (254)
|- +.-|+.
T Consensus 95 GGGS~iD~a 103 (382)
T PRK10624 95 GGGSPQDTC 103 (382)
T ss_pred CChHHHHHH
Confidence 87 444665
No 367
>PRK05434 phosphoglyceromutase; Provisional
Probab=30.40 E-value=3.5e+02 Score=26.57 Aligned_cols=127 Identities=16% Similarity=0.088 Sum_probs=79.0
Q ss_pred EEEecCCccccchhhhhhhccCCCCC-ChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeE---EEEeCCCc---cccHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPY-DPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKV---ILVTGRDE---ETFGQ 176 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i---~~vTgR~~---e~~r~ 176 (254)
|.+= ||..=+++--....+-|.--+ +-+..++-++.+.-.-.|...++++..++.|-.+ .++|.--= .++-.
T Consensus 53 VGLP-~gqmGNSEVGH~~iGaGriv~q~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~ 131 (507)
T PRK05434 53 VGLP-DGQMGNSEVGHLNIGAGRIVYQDLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLF 131 (507)
T ss_pred cCCC-CCCccchHHhHhhcCCCceeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHH
Confidence 4444 776655442222222222112 3456777777787788889999999999887544 46665430 13334
Q ss_pred HHHHHHHhCCCC-CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc
Q 025360 177 VTRDNLHNQGFV-GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW 231 (254)
Q Consensus 177 ~T~~~L~~~G~~-~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~ 231 (254)
...+.+.+.|++ .+-++++-+.+..++++..|.+.+...+.+.|.-.++.|+.+.
T Consensus 132 ~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~~~~~~iasv~GRy 187 (507)
T PRK05434 132 ALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAELGVGRIASVSGRY 187 (507)
T ss_pred HHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHHhCCeeEEEEeccc
Confidence 556677788994 3667788777777776778888888888777753344444443
No 368
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=30.36 E-value=80 Score=28.33 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
-+.+.-|+..|++.|-.|.+.++++ -..++.+..-|.+.|++.
T Consensus 53 e~kTA~L~~tL~a~GAeV~~~~sNp-lSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 53 EAKTAVLAETLKALGAEVRWTGSNP-LSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESST-TT--HHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHcCCeEEEecCCC-cccchHHHHHhccCCceE
Confidence 3456678999999999999999998 788889999999999974
No 369
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=30.13 E-value=3.3e+02 Score=22.81 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCC--eEEE-EeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 150 LVLFNKLIESGL--KVIL-VTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 150 ~ell~~L~~~G~--~i~~-vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
..+++.+.+.+. .|.+ +|+|+ + ....+..+++|++ +. .+.....+. ...+-..+.+.+.+.+.++++.
T Consensus 15 ~~ll~~~~~~~l~~~I~~vi~~~~-~---~~~~~~A~~~gip-~~--~~~~~~~~~--~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 15 QAIIDACKEGKIPASVVLVISNKP-D---AYGLERAAQAGIP-TF--VLSLKDFPS--REAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred HHHHHHHHcCCCCceEEEEEECCc-c---chHHHHHHHcCCC-EE--EECccccCc--hhhhhHHHHHHHHhcCCCEEEE
Confidence 456666666554 5554 68887 3 3335677888998 22 222221111 1123344556677777777666
Q ss_pred Ec
Q 025360 227 IG 228 (254)
Q Consensus 227 IG 228 (254)
+|
T Consensus 86 ~~ 87 (190)
T TIGR00639 86 AG 87 (190)
T ss_pred eC
Confidence 65
No 370
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=29.83 E-value=98 Score=23.36 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=47.1
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHH
Q 025360 71 MIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVL 150 (254)
Q Consensus 71 ~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ 150 (254)
|.|.-|-.|.....+...+|++.+.... ...+.|++.=+=++++ ..+.+-.++
T Consensus 14 i~GeSypEn~~~Fy~Pi~~wl~~Yl~~~--~~~i~~~~~L~YfNTS-------------------------Ssk~l~~i~ 66 (99)
T PF09345_consen 14 ISGESYPENAFAFYQPILDWLEAYLAEP--NKPITFNFKLSYFNTS-------------------------SSKALMDIF 66 (99)
T ss_pred EecccCccCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEEEEEecH-------------------------hHHHHHHHH
Confidence 5566777888888888888887776443 3445555543223332 356777888
Q ss_pred HHHHHHHHCCCeEEEE
Q 025360 151 VLFNKLIESGLKVILV 166 (254)
Q Consensus 151 ell~~L~~~G~~i~~v 166 (254)
++|+.+.++|.+|.+.
T Consensus 67 ~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 67 DLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHhcCCcEEEE
Confidence 8899889999888754
No 371
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.76 E-value=40 Score=31.08 Aligned_cols=46 Identities=28% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 138 ALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 138 ~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
++-+..+-.+-...++.+|+++|+.|. +|.|. +....+.|+..||+
T Consensus 5 iDI~n~~hvhfFk~lI~elekkG~ev~-iT~rd----~~~v~~LLd~ygf~ 50 (346)
T COG1817 5 IDIGNPPHVHFFKNLIWELEKKGHEVL-ITCRD----FGVVTELLDLYGFP 50 (346)
T ss_pred EEcCCcchhhHHHHHHHHHHhCCeEEE-EEEee----cCcHHHHHHHhCCC
Confidence 333445566667788999999999765 66777 67778899999998
No 372
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=29.69 E-value=81 Score=25.64 Aligned_cols=45 Identities=7% Similarity=-0.022 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..+--|+.-.++..+++|..+.++.-.. +.-.....+||.++++.
T Consensus 73 g~l~GGt~lT~~~a~~~~KP~l~i~~~~-~~~~~~v~~wl~~~~i~ 117 (145)
T PF12694_consen 73 GELTGGTALTVEFARKHGKPCLHIDLSI-PEAAAAVAEWLREHNIR 117 (145)
T ss_dssp SS--HHHHHHHHHHHHTT--EEEETS-H-HHHHHHHHHHHHHTT--
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEEecCc-ccHHHHHHHHHHHCCce
Confidence 3456688888889999999998883322 33355667899999986
No 373
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.49 E-value=3.9e+02 Score=24.77 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=45.4
Q ss_pred HHHHHHHCC-CeEEEEeCCCccc---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 152 LFNKLIESG-LKVILVTGRDEET---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 152 ll~~L~~~G-~~i~~vTgR~~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
+-+.+++.| -+++++|++. -. ..+...+.|++.|+. + . ++. +....|...--....+.+.+.+.+.++.|
T Consensus 20 l~~~l~~~g~~r~lvvt~~~-~~~~g~~~~v~~~L~~~~i~-~-~-~~~--~v~~~p~~~~v~~~~~~~~~~~~D~Iiai 93 (379)
T TIGR02638 20 IVDEVKRRGFKKALVVTDKD-LIKFGVADKVTDLLDEAGIA-Y-E-LFD--EVKPNPTITVVKAGVAAFKASGADYLIAI 93 (379)
T ss_pred HHHHHHhcCCCEEEEEcCcc-hhhccchHHHHHHHHHCCCe-E-E-EEC--CCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 335566777 5889999875 32 345677888888886 3 2 222 21222222222233444556778888888
Q ss_pred cC-Cccccc
Q 025360 228 GD-QWSDLQ 235 (254)
Q Consensus 228 GD-q~sDi~ 235 (254)
|- +.-|..
T Consensus 94 GGGSviD~a 102 (379)
T TIGR02638 94 GGGSPIDTA 102 (379)
T ss_pred CChHHHHHH
Confidence 87 445765
No 374
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=29.48 E-value=1.5e+02 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred CchHH--HHHHHHHHHCCCeEEEEeC
Q 025360 145 AIPGV--LVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 145 ~~pg~--~ell~~L~~~G~~i~~vTg 168 (254)
.+|.- .+++++|+++|+++++...
T Consensus 62 ~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 62 RFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred cCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 45666 9999999999999987763
No 375
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.30 E-value=1.6e+02 Score=26.93 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEe
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVT 167 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vT 167 (254)
..+|...++++.|+++|+++.+..
T Consensus 61 ~~fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 61 ERFPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEE
Confidence 366777899999999999998654
No 376
>PRK00942 acetylglutamate kinase; Provisional
Probab=29.25 E-value=3e+02 Score=24.38 Aligned_cols=26 Identities=8% Similarity=0.312 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 85 EQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 85 ~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
.++..|+.... ++.+|+=+.|+++.+
T Consensus 12 r~~~~yi~~~~-----~~~iViK~GGs~l~~ 37 (283)
T PRK00942 12 SEALPYIQRFM-----GKTIVIKYGGNAMTD 37 (283)
T ss_pred HHHHHHHHHHc-----CCeEEEEEChHHhcC
Confidence 34555654444 457888899999865
No 377
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.23 E-value=48 Score=18.47 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHh
Q 025360 7 EVLLFLLLAIFSK 19 (254)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (254)
+++||++++++..
T Consensus 9 ivVLFILLiIvG~ 21 (24)
T PF09680_consen 9 IVVLFILLIIVGA 21 (24)
T ss_pred HHHHHHHHHHhcc
Confidence 4677777776443
No 378
>PRK13938 phosphoheptose isomerase; Provisional
Probab=29.18 E-value=77 Score=26.86 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.---+.+++.++.++++|.+++.+|+.+
T Consensus 123 SG~t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 123 SGNSMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457889999999999999999999988
No 379
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=29.13 E-value=55 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.+++.-++..|.. .++.|||+.||+.--......|..-|
T Consensus 199 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 239 (270)
T PRK10513 199 TGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGN 239 (270)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecC
Confidence 4455555566754 49999999999976653334555444
No 380
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=29.10 E-value=55 Score=27.78 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.+++.++.+.|.+.|++|+ .|+ -|.++|+++|++
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~--------GTAk~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STG--------GTAKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-Ecc--------HHHHHHHHcCCe
Confidence 5788999999999999995 444 355889999986
No 381
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=28.96 E-value=2e+02 Score=25.39 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 85 EQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 85 ~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
.++..|++... .+.+|+=+.|+++.+
T Consensus 3 ~~~~~yi~~~~-----~~~~ViKlGGs~i~~ 28 (279)
T cd04250 3 IEALPYIQKFR-----GKTVVIKYGGNAMKD 28 (279)
T ss_pred hhhhHHHHHHc-----CCEEEEEEChHHhcC
Confidence 45666766555 246888899999864
No 382
>PLN02494 adenosylhomocysteinase
Probab=28.59 E-value=1.6e+02 Score=28.66 Aligned_cols=76 Identities=12% Similarity=-0.051 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHc-CCcEEE
Q 025360 147 PGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE-GYRIWG 225 (254)
Q Consensus 147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~-Gy~i~~ 225 (254)
+.+.-|+..|++.|-+|.+.|+++ -..++.+..-|.+.|++-|. -++. +...|-..+.+.|.-. +..+-+
T Consensus 57 ~kTa~L~~tL~~~GA~v~~~~~Np-~sTqd~vaaal~~~gi~vfa---~~g~-----~~~ey~~~~~~~l~~~~~~~p~~ 127 (477)
T PLN02494 57 IQTAVLIETLTALGAEVRWCSCNI-FSTQDHAAAAIARDSAAVFA---WKGE-----TLQEYWWCTERALDWGPGGGPDL 127 (477)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCC-ccchHHHHHHHHhCCceEEE---ecCC-----CHHHHHHHHHHHHcCCCCCCCCE
Confidence 345678999999999999999999 88889999999999998432 1222 1235666666666532 223455
Q ss_pred EEcCCc
Q 025360 226 NIGDQW 231 (254)
Q Consensus 226 ~IGDq~ 231 (254)
.++|.-
T Consensus 128 i~DDG~ 133 (477)
T PLN02494 128 IVDDGG 133 (477)
T ss_pred EEeCCc
Confidence 566653
No 383
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=28.34 E-value=4.2e+02 Score=24.54 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHCCCeEEEEeCCCcc---ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcC-
Q 025360 154 NKLIESGLKVILVTGRDEE---TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGD- 229 (254)
Q Consensus 154 ~~L~~~G~~i~~vTgR~~e---~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGD- 229 (254)
+.+++.|-+++++|++..- ...+..++.|+..|+. + .++.+- ...|...--....+.+...+.+.++.||=
T Consensus 22 ~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~-~--~~~~~v--~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 96 (382)
T cd08187 22 KELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIE-V--VELGGV--EPNPRLETVREGIELCKEEKVDFILAVGGG 96 (382)
T ss_pred HHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCe-E--EEECCc--cCCCCHHHHHHHHHHHHHcCCCEEEEeCCh
Confidence 3445557899999986411 1245677788888885 2 122211 11121111222334455677888888886
Q ss_pred Cccccc
Q 025360 230 QWSDLQ 235 (254)
Q Consensus 230 q~sDi~ 235 (254)
+..|..
T Consensus 97 S~iD~a 102 (382)
T cd08187 97 SVIDSA 102 (382)
T ss_pred HHHHHH
Confidence 334554
No 384
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=28.31 E-value=81 Score=26.73 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
--+.+.+.++.++++|.+++.+||.+
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46789999999999999999999988
No 385
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.23 E-value=1.3e+02 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..|...+++++++++|+.+.+.||-. - ..+...+.|.+.|+.
T Consensus 75 l~~~~~~il~~~~~~g~~~~i~TNG~-l-l~~~~~~~L~~~g~~ 116 (378)
T PRK05301 75 LRKDLEELVAHARELGLYTNLITSGV-G-LTEARLAALKDAGLD 116 (378)
T ss_pred CchhHHHHHHHHHHcCCcEEEECCCc-c-CCHHHHHHHHHcCCC
Confidence 34667889999999999999999865 2 223455678888875
No 386
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=28.12 E-value=1.3e+02 Score=26.14 Aligned_cols=134 Identities=16% Similarity=0.035 Sum_probs=69.4
Q ss_pred CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHH---------HCCCeEEE-EeCC
Q 025360 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI---------ESGLKVIL-VTGR 169 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~---------~~G~~i~~-vTgR 169 (254)
.++.+|-|+=+++..... --....|.+++...=.. ..+.+++..+. +.-+++.+ +...
T Consensus 60 ~Pd~~I~svGt~I~~~~~----------~~~d~~w~~~i~~~w~~--~~v~~~l~~~~~l~~q~~~~q~~~k~sy~~~~~ 127 (247)
T PF05116_consen 60 QPDYIITSVGTEIYYGEN----------WQPDEEWQAHIDERWDR--ERVEEILAELPGLRPQPESEQRPFKISYYVDPD 127 (247)
T ss_dssp E-SEEEETTTTEEEESST----------TEE-HHHHHHHHTT--H--HHHHHHHHCHCCEEEGGCCCGCCTCECEEEETT
T ss_pred CCCEEEecCCeEEEEcCC----------CcChHHHHHHHHhcCCh--HHHHHHHHHhhCcccCCccccCCeeEEEEEecc
Confidence 367899888777766210 01134677777653222 55556665553 12345543 3333
Q ss_pred Ccccc-HHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccH-HHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEE
Q 025360 170 DEETF-GQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYK-SEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTF 244 (254)
Q Consensus 170 ~~e~~-r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK-~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~f 244 (254)
. ... .+...+.|+..|+.. +++.+... -.--|...-| .+++.-+...|. ..++..||+-+|+.--..+.+.+
T Consensus 128 ~-~~~~~~~i~~~l~~~~l~~--~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~v 204 (247)
T PF05116_consen 128 D-SADILEEIRARLRQRGLRV--NVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGV 204 (247)
T ss_dssp S-HCHHHHHHHHHHHCCTCEE--EEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEE
T ss_pred c-chhHHHHHHHHHHHcCCCe--eEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEE
Confidence 3 222 345667788888862 33333211 0001222334 334444445554 34778999999986655666777
Q ss_pred EeCC
Q 025360 245 KLPN 248 (254)
Q Consensus 245 klPN 248 (254)
.+-|
T Consensus 205 vV~N 208 (247)
T PF05116_consen 205 VVGN 208 (247)
T ss_dssp E-TT
T ss_pred EEcC
Confidence 7766
No 387
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=28.00 E-value=4.7e+02 Score=24.61 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHHHHHHCC-CeEEEEeCCCcccc---HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 152 LFNKLIESG-LKVILVTGRDEETF---GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 152 ll~~L~~~G-~~i~~vTgR~~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
+-+.+++.| -+++++|++. -.. .+...+.|++.|+. + . ++.+ ....|...--....+...+.+.+.++.|
T Consensus 14 l~~~l~~~g~~~vlivt~~~-~~~~g~~~~v~~~L~~~gi~-~-~-~f~~--v~~~p~~~~v~~~~~~~~~~~~D~IIai 87 (414)
T cd08190 14 VGMDLKNLGARRVCLVTDPN-LAQLPPVKVVLDSLEAAGIN-F-E-VYDD--VRVEPTDESFKDAIAFAKKGQFDAFVAV 87 (414)
T ss_pred HHHHHHHcCCCeEEEEECcc-hhhcchHHHHHHHHHHcCCc-E-E-EeCC--CCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 334566667 5889999885 322 35567788888886 2 1 2221 1111222112233344556777877878
Q ss_pred cCC-cccc
Q 025360 228 GDQ-WSDL 234 (254)
Q Consensus 228 GDq-~sDi 234 (254)
|=. .-|.
T Consensus 88 GGGSviD~ 95 (414)
T cd08190 88 GGGSVIDT 95 (414)
T ss_pred CCccHHHH
Confidence 653 3454
No 388
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=27.96 E-value=3.9e+02 Score=26.27 Aligned_cols=123 Identities=16% Similarity=0.031 Sum_probs=76.4
Q ss_pred EEEecCCccccchhhhhhhccCCCCC-ChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEE---EEeCCCc---cccHH
Q 025360 104 WILDVDDTCISNVYYYKGKRYGCDPY-DPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVI---LVTGRDE---ETFGQ 176 (254)
Q Consensus 104 vIfDIDgTll~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~---~vTgR~~---e~~r~ 176 (254)
|.+= ||..=+++--....+-|.--| +-+..++-++.+.-.-.|..+++++..++.|-++- ++|.--= .++-.
T Consensus 49 VGLP-~gqmGNSEVGH~~iGaGRiv~q~~~ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~ 127 (501)
T TIGR01307 49 VGLP-DGQMGNSEVGHLNIGAGRVVYQDLVRISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLI 127 (501)
T ss_pred cCCC-CCCCCchHHHHhhcCCCceeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHH
Confidence 4444 676555442222222222122 34667777888877888899999999998775544 5665420 13334
Q ss_pred HHHHHHHhCCCC-CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 177 VTRDNLHNQGFV-GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 177 ~T~~~L~~~G~~-~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
...+..++.|++ .|-++++-+.+..++++..|.+.+...+.+.|.-.++.|
T Consensus 128 ~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~~~~~~iasv 179 (501)
T TIGR01307 128 ALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKEIGNGRIATI 179 (501)
T ss_pred HHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 556667788995 466888888777776677888877777776664333333
No 389
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=27.83 E-value=1.3e+02 Score=24.13 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.+.+.++++.++++|+++.+-||..
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3568899999999999999999975
No 390
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.78 E-value=83 Score=26.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.--+.++++++.++++|.+++.+|+..
T Consensus 122 G~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 122 GNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 346789999999999999999999987
No 391
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.71 E-value=96 Score=28.53 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=42.0
Q ss_pred HHHHHHCCCeEEEEeCCCccc---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcC
Q 025360 153 FNKLIESGLKVILVTGRDEET---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGD 229 (254)
Q Consensus 153 l~~L~~~G~~i~~vTgR~~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGD 229 (254)
-..+++.| ++++||++. -. ..+.....|++.|+. +. +...- .+.|...--....+.+.+.+.+.++.||-
T Consensus 15 ~~~l~~~g-r~lvVt~~~-~~~~~~~~~v~~~L~~~~i~-~~--~~~~~--~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (366)
T PF00465_consen 15 GEELKRLG-RVLVVTDPS-LSKSGLVDRVLDALEEAGIE-VQ--VFDGV--GPNPTLEDVDEAAEQARKFGADCIIAIGG 87 (366)
T ss_dssp HHHHHCTT-EEEEEEEHH-HHHHTHHHHHHHHHHHTTCE-EE--EEEEE--SSS-BHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred HHHHHhcC-CEEEEECch-HHhCccHHHHHHHHhhCceE-EE--EEecC--CCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33455558 999999984 32 245666778888987 31 22211 11122222334455566778888888887
Q ss_pred Cc
Q 025360 230 QW 231 (254)
Q Consensus 230 q~ 231 (254)
.-
T Consensus 88 GS 89 (366)
T PF00465_consen 88 GS 89 (366)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 392
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=27.58 E-value=40 Score=24.45 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCceEEEecCCccccchhhhh
Q 025360 100 GMDAWILDVDDTCISNVYYYK 120 (254)
Q Consensus 100 ~~~avIfDIDgTll~~~~~~~ 120 (254)
..-.++++=|||.+++..|+.
T Consensus 39 ~~~~lvL~eDGT~VddEeyF~ 59 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDEEYFQ 59 (78)
T ss_dssp STCEEEETTTTCBESSCHHHC
T ss_pred cCcEEEEeCCCcEEccHHHHh
Confidence 466799999999999988775
No 393
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=27.22 E-value=2.8e+02 Score=24.82 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
..+|...++++.|+++|+++++...
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4667789999999999999998764
No 394
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=27.22 E-value=3.4e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 82 LVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 82 ~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
.+..++..|++... .+.+|+=+.|.++++
T Consensus 9 ~~~~~~~pyi~~~~-----~~~~VIk~gG~~~~~ 37 (284)
T CHL00202 9 QVLSEALPYIQKFR-----GRIMVIKYGGAAMKN 37 (284)
T ss_pred HHHHHHHHHHHHHc-----CCeEEEEEChHHhcC
Confidence 34556677776655 257888899988765
No 395
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=27.16 E-value=2.1e+02 Score=25.08 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH----HhCCCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL----HNQGFVG 189 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L----~~~G~~~ 189 (254)
..+|...++++.|+++|+++++...-. - |+--.+.+ ...|+..
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~-v--~~w~~~~~~~~~~~~Gvdg 109 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY-I--REWWAEVVKKLLVSLGVDG 109 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh-H--HHHHHHHHHHhhccCCCCE
Confidence 356788999999999999999988755 2 33333333 4457764
No 396
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=26.94 E-value=1.6e+02 Score=24.53 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHH-CC
Q 025360 82 LVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIE-SG 160 (254)
Q Consensus 82 ~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~-~G 160 (254)
.+.+||..+++.+... .+...+++|+++.-.+. ......+.++++.+++ .|
T Consensus 62 ~a~~qA~~f~~~~~~~-~~~~~~~lD~E~~~~~~---------------------------~~~~~~~~~f~~~v~~~~G 113 (195)
T cd06417 62 NAIAEADYFLNNIKGY-VGKAVLVLDWESYQNSA---------------------------WGNSAWARQWVNRVHELTG 113 (195)
T ss_pred CHHHHHHHHHHHhccc-cCCCcEEEEeeCCCCCc---------------------------hHHHHHHHHHHHHHHHHHC
Confidence 4678888888776532 22346789998743210 0112456788999986 69
Q ss_pred CeEEEEeCCC
Q 025360 161 LKVILVTGRD 170 (254)
Q Consensus 161 ~~i~~vTgR~ 170 (254)
+++++=|++.
T Consensus 114 ~~~~iY~~~~ 123 (195)
T cd06417 114 VWPMVYVSKS 123 (195)
T ss_pred CCcEEEecHH
Confidence 9999999876
No 397
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=26.83 E-value=4.3e+02 Score=23.59 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 80 VELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 80 ~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
.-.+.++.++++..+.. ..+.+.+|..|-||+=|-
T Consensus 113 iPHit~eIk~~i~~~~~-~~~~dv~i~EiGGTvGDi 147 (255)
T cd03113 113 IPHITDEIKERIRRVAE-KSGADVVIVEIGGTVGDI 147 (255)
T ss_pred CcCccHHHHHHHHHhhc-cCCCCEEEEEeCCccccc
Confidence 44556677777665542 256899999999999774
No 398
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.76 E-value=1.7e+02 Score=22.35 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+|...++.+.++++|+.++.|+... .+...++.++.+++
T Consensus 43 ~~~l~~~~~~~~~~~v~vv~V~~~~----~~~~~~~~~~~~~~ 81 (149)
T cd02970 43 LRALSKLLPELDALGVELVAVGPES----PEKLEAFDKGKFLP 81 (149)
T ss_pred HHHHHHHHHHHHhcCeEEEEEeCCC----HHHHHHHHHhcCCC
Confidence 5666777888888999999998766 23334677777776
No 399
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=26.42 E-value=1e+02 Score=25.20 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHH-H
Q 025360 80 VELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI-E 158 (254)
Q Consensus 80 ~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~-~ 158 (254)
.....+||..|++.+.....+.-.+++|+......+. + .......+..++++++ .
T Consensus 63 ~~~a~~qA~~f~~~~~~~~~~~~~~~lD~E~~~~~~~-------------~-----------~~~~~~~~~~f~~~~~~~ 118 (181)
T PF01183_consen 63 SSDAEAQADYFLNQVKGGDPGDLPPALDVEDDKSNNP-------------S-----------KSDNTAWVKAFLDEVEKA 118 (181)
T ss_dssp HCHHHHHHHHHHHCTHTSSTSCS-EEEEE-S-GGCCS-------------S-----------HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCCcceEEEeccccccCCC-------------C-----------HHHHHHHHHHHHHHHHHH
Confidence 4567889999988885222333447899996511110 1 1123445678899994 5
Q ss_pred CCCeEEEEeCCC
Q 025360 159 SGLKVILVTGRD 170 (254)
Q Consensus 159 ~G~~i~~vTgR~ 170 (254)
.|+++++=|++.
T Consensus 119 ~G~~~~iY~~~~ 130 (181)
T PF01183_consen 119 AGYKPGIYTSKS 130 (181)
T ss_dssp CTSEEEEEEEHH
T ss_pred hCCceeEeecHH
Confidence 899999988876
No 400
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.35 E-value=3e+02 Score=23.24 Aligned_cols=70 Identities=6% Similarity=0.086 Sum_probs=36.3
Q ss_pred HHHHHHHHHCC--CeEE-EEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 150 LVLFNKLIESG--LKVI-LVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 150 ~ell~~L~~~G--~~i~-~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
..+++.+.+.+ ..|. ++|+++ + .......++.|+|. . .+....... ...+...+.+.+++.+.++++.
T Consensus 16 ~~ll~~~~~~~~~~~I~~vvs~~~-~---~~~~~~a~~~gIp~-~--~~~~~~~~~--~~~~~~~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 16 QAIIDACAAGQLPAEIVAVISDRP-D---AYGLERAEAAGIPT-F--VLDHKDFPS--REAFDAALVEALDAYQPDLVVL 86 (200)
T ss_pred HHHHHHHHcCCCCcEEEEEEecCc-c---chHHHHHHHcCCCE-E--EECccccCc--hhHhHHHHHHHHHHhCcCEEEh
Confidence 45566666654 4555 468887 3 23456778889982 1 222211110 1123334455566666666555
Q ss_pred Ec
Q 025360 227 IG 228 (254)
Q Consensus 227 IG 228 (254)
+|
T Consensus 87 ~~ 88 (200)
T PRK05647 87 AG 88 (200)
T ss_pred HH
Confidence 44
No 401
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=26.21 E-value=59 Score=28.15 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEe
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKL 246 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fkl 246 (254)
.+++.-++..|.. .++++||+.+|+.--......+..
T Consensus 192 ~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam 230 (264)
T COG0561 192 YALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAM 230 (264)
T ss_pred HHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeec
Confidence 3445445557775 599999999999655533244433
No 402
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=26.06 E-value=53 Score=28.62 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360 210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN 248 (254)
Q Consensus 210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN 248 (254)
.+++.-++..|.. .++.|||+.||+.--......|..-|
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 4455555666754 49999999999965552224444433
No 403
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.06 E-value=3.3e+02 Score=21.49 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccc---HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEE
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETF---GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
..++++...+.+..++.+|... ... -..+.+.|++.|++. -.+++.+....++ .-....++.+++.|+..+.
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~-~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~~---~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLY-GHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVGK---HDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-ccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCCc---cChHHHHHHHHHcCCCEEE
Confidence 3556667778888898888776 333 344556777778874 3567776542221 1123455578888877665
Q ss_pred EEcCCcccc
Q 025360 226 NIGDQWSDL 234 (254)
Q Consensus 226 ~IGDq~sDi 234 (254)
--|..+.++
T Consensus 118 ~~~~~~~~i 126 (137)
T PRK02261 118 PPGTDPEEA 126 (137)
T ss_pred CcCCCHHHH
Confidence 445555444
No 404
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.82 E-value=78 Score=23.93 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH-cCCcEE
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE-EGYRIW 224 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~-~Gy~i~ 224 (254)
.+.+.++.+.|.+.|++|+ .|. .|.++|++.|++. ..+....+. +.| .+...+.+ .....+
T Consensus 11 K~~~~~~a~~l~~~G~~i~-AT~--------gTa~~L~~~Gi~~--~~v~~~~~~-g~~------~i~~~i~~~g~idlV 72 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPLF-ATG--------GTSRVLADAGIPV--RAVSKRHED-GEP------TVDAAIAEKGKFDVV 72 (112)
T ss_pred HHHHHHHHHHHHHCCCEEE-ECc--------HHHHHHHHcCCce--EEEEecCCC-CCc------HHHHHHhCCCCEEEE
Confidence 4677888899999999985 554 3557888899872 334333221 111 12334444 445667
Q ss_pred EEEcC
Q 025360 225 GNIGD 229 (254)
Q Consensus 225 ~~IGD 229 (254)
+++-|
T Consensus 73 In~~~ 77 (112)
T cd00532 73 INLRD 77 (112)
T ss_pred EEcCC
Confidence 77655
No 405
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.81 E-value=5.2e+02 Score=23.71 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=45.3
Q ss_pred HHHHHHHHCC-CeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
++-+.+++.| -+++++|++.-.+ ..+..++.|++.|+. + . ++.+ ..+.|....-....+...+.+.+.++.|
T Consensus 14 ~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~-~-~-~~~~--v~~~p~~~~v~~~~~~~~~~~~d~IIai 88 (370)
T cd08192 14 ELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLA-A-A-LFDE--VPPNPTEAAVEAGLAAYRAGGCDGVIAF 88 (370)
T ss_pred HHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCe-E-E-EeCC--CCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445566667 4888999875111 345667788888886 2 1 2221 1111222222333344555677778888
Q ss_pred cC-Cccccccc
Q 025360 228 GD-QWSDLQGE 237 (254)
Q Consensus 228 GD-q~sDi~ga 237 (254)
|- +.-|+..+
T Consensus 89 GGGSviD~aK~ 99 (370)
T cd08192 89 GGGSALDLAKA 99 (370)
T ss_pred CCchHHHHHHH
Confidence 87 44576533
No 406
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=25.56 E-value=3.4e+02 Score=23.96 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=56.0
Q ss_pred CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEE-eC-----------
Q 025360 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV-TG----------- 168 (254)
Q Consensus 101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~v-Tg----------- 168 (254)
++-||+=+=||++.+.. + .++ ...+..+.+.+..++.+|+++++| ||
T Consensus 9 ~~~iViK~Ggs~l~~~~-------~--~~~------------~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~ 67 (266)
T PRK12314 9 AKRIVIKVGSSTLSYEN-------G--KIN------------LERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKL 67 (266)
T ss_pred CCEEEEEeCCCeeeCCC-------C--CcC------------HHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecc
Confidence 45677888888875320 0 111 223556667788888999999987 54
Q ss_pred --CC-ccccHH------------HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccH--HHHHHHHHHcCCcEEEE
Q 025360 169 --RD-EETFGQ------------VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYK--SEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 169 --R~-~e~~r~------------~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK--~~~r~~l~~~Gy~i~~~ 226 (254)
++ +...++ .....|.+.|++. .+++++.++.... ..|. ....+.+.+.|+-++++
T Consensus 68 ~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-~q~llT~~~~~~~--~~~~~~~~~l~~ll~~g~IPVv~ 139 (266)
T PRK12314 68 DKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-AQILLTRDDFDSP--KSRANVKNTFESLLELGILPIVN 139 (266)
T ss_pred ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-EEEEEecccccch--HHHHHHHHHHHHHHHCCCEEEEc
Confidence 11 000111 1245677788874 4566665543211 1222 33444555678766665
No 407
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=25.56 E-value=55 Score=28.26 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=23.3
Q ss_pred CCcccH-HHHHHHHHHcCCc--EEEEEcCCcccccccc
Q 025360 204 NAVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDLQGEC 238 (254)
Q Consensus 204 p~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~ 238 (254)
|...-| ..+++-+...+.. .+++|||+.+|+.+..
T Consensus 163 p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~ 200 (244)
T TIGR00685 163 PRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFR 200 (244)
T ss_pred eCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHH
Confidence 333445 3444445555643 6899999999998776
No 408
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=25.53 E-value=2.9e+02 Score=20.69 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY 190 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~ 190 (254)
+--...+++.++..|.++++++-++ .....+...|+...
T Consensus 62 l~~L~~~~~~~~~~g~~~~l~~i~p------~v~~~~~~~gl~~~ 100 (117)
T COG1366 62 LGVLVALLKSARLRGVELVLVGIQP------EVARTLELTGLDKS 100 (117)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH------HHHHHHHHhCchhh
Confidence 3344567889999998888888777 55667788888743
No 409
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.43 E-value=2.3e+02 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCeEEE
Q 025360 149 VLVLFNKLIESGLKVIL 165 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~ 165 (254)
+.++...|++.|+.+.+
T Consensus 17 a~~~~~~Lr~~g~~v~~ 33 (91)
T cd00860 17 AKEVAKKLSDAGIRVEV 33 (91)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 34444444444444443
No 410
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.41 E-value=5.4e+02 Score=23.93 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=44.7
Q ss_pred HHHHHHHHCC-CeEEEEeCCCc--cccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDE--ETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~--e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
++-+.+++.| -+++++|++.- -...+...+.|++.|+. + .++.+. .+.|...--....+...+.+.+.++.|
T Consensus 21 ~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~-~--~~f~~v--~~np~~~~v~~~~~~~~~~~~D~Iiai 95 (383)
T PRK09860 21 DAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIF-S--VIYDGT--QPNPTTENVAAGLKLLKENNCDSVISL 95 (383)
T ss_pred HHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCe-E--EEeCCC--CCCcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3445667778 58889998741 12345677888888885 2 222221 112222222333444556788888888
Q ss_pred cCC-cccc
Q 025360 228 GDQ-WSDL 234 (254)
Q Consensus 228 GDq-~sDi 234 (254)
|-. .-|.
T Consensus 96 GGGS~iD~ 103 (383)
T PRK09860 96 GGGSPHDC 103 (383)
T ss_pred CCchHHHH
Confidence 873 3354
No 411
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.40 E-value=1.2e+02 Score=21.64 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=23.0
Q ss_pred HHHHHHHHHC--CCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 150 LVLFNKLIES--GLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 150 ~ell~~L~~~--G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
.++++.+++. +.+++++|+.. + ......+.+.|..+
T Consensus 59 ~~~~~~i~~~~~~~~ii~~t~~~-~---~~~~~~~~~~g~~~ 96 (112)
T PF00072_consen 59 LELLEQIRQINPSIPIIVVTDED-D---SDEVQEALRAGADD 96 (112)
T ss_dssp HHHHHHHHHHTTTSEEEEEESST-S---HHHHHHHHHTTESE
T ss_pred cccccccccccccccEEEecCCC-C---HHHHHHHHHCCCCE
Confidence 4566666654 58999999877 3 33333444788764
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=25.35 E-value=3.4e+02 Score=26.17 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc------EEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER------LIMRTAADKGKNAVTYKSEIRKQLLEEGYR 222 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~------lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~ 222 (254)
++.++....++|-+++++|. |...+....+.+.+|++ ..+ +.+............+...++..+++.+.+
T Consensus 280 ~~~f~~~~~~~ge~~~y~s~---eEs~~~i~~~~~~lg~~-~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~ 355 (484)
T TIGR02655 280 VSKFLENACANKERAILFAY---EESRAQLLRNAYSWGID-FEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPA 355 (484)
T ss_pred HHHHHHHHHHCCCeEEEEEe---eCCHHHHHHHHHHcCCC-hHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCC
Confidence 34666666678999999997 44577788888999986 222 444332111100123445566677666666
Q ss_pred EEEEEcCCcccc
Q 025360 223 IWGNIGDQWSDL 234 (254)
Q Consensus 223 i~~~IGDq~sDi 234 (254)
.++. |+.+.+
T Consensus 356 ~vvI--Dsi~~~ 365 (484)
T TIGR02655 356 RIAI--DSLSAL 365 (484)
T ss_pred EEEE--cCHHHH
Confidence 4433 776655
No 413
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=25.21 E-value=52 Score=27.15 Aligned_cols=30 Identities=20% Similarity=-0.034 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCC--cEEEEEcCCccccccccc
Q 025360 210 SEIRKQLLEEGY--RIWGNIGDQWSDLQGECT 239 (254)
Q Consensus 210 ~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~ 239 (254)
..++.-++..|. ..++++||+.+|+.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ 197 (204)
T TIGR01484 166 SALQALLKELNGKRDEILAFGDSGNDEEMFEV 197 (204)
T ss_pred HHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHH
Confidence 344444555554 349999999999987763
No 414
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=25.19 E-value=4.3e+02 Score=24.73 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=41.6
Q ss_pred HHHHHHHHCCC-eEEEEeCCCccc---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 151 VLFNKLIESGL-KVILVTGRDEET---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 151 ell~~L~~~G~-~i~~vTgR~~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
++-+.+++.|. +++++|++. -. .-+...+.|++.|+. +. +.. +..+.|...--....+...+.+.+.++.
T Consensus 39 ~l~~~~~~~g~~~~lvv~~~~-~~~~g~~~~v~~~L~~~gi~-~~--~~~--~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 39 SCGQQAQTRGLKHLFVMADSF-LHQAGMTAGLTRSLAVKGIA-MT--LWP--CPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred HHHHHHHhcCCCEEEEEcCcc-hhhCccHHHHHHHHHHcCCe-EE--EEC--CCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 34456677784 555666654 21 135567889988986 21 221 1222222121222333445678888888
Q ss_pred EcCCc-cccc
Q 025360 227 IGDQW-SDLQ 235 (254)
Q Consensus 227 IGDq~-sDi~ 235 (254)
||-.- -|..
T Consensus 113 vGGGS~iD~A 122 (395)
T PRK15454 113 FGGGSVLDAA 122 (395)
T ss_pred eCChHHHHHH
Confidence 88643 2543
No 415
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.19 E-value=98 Score=25.94 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
-.+.+.+.++.++++|.+++.+|+..
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46889999999999999999999987
No 416
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=24.91 E-value=1.5e+02 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEE-eCCCccccHHHHHHHHHhCCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILV-TGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~v-TgR~~e~~r~~T~~~L~~~G~~ 188 (254)
....|.+.++++.+++.|+.+.+. ||.. .-......+.|.++|++
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~-~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGK-GFDDPEIAEFLIDNGVR 130 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCc-ccCCHHHHHHHHHcCCC
Confidence 335688899999999999999985 8854 32345667788888886
No 417
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.81 E-value=34 Score=17.75 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHh
Q 025360 5 IKEVLLFLLLAIFSK 19 (254)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (254)
||...+++.++++++
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 455555555555444
No 418
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.64 E-value=1.5e+02 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
..+.+.-++..|++.|-+|.+.++++ -..++.+...|.+.|++-
T Consensus 41 l~~~Ta~l~~~L~~~GA~v~~~~~np-~stqd~vaaaL~~~gi~v 84 (406)
T TIGR00936 41 VTVETAVLIETLVAGGAEVAWTSCNP-LSTQDDVAAALAKAGIPV 84 (406)
T ss_pred chHHHHHHHHHHHHcCCEEEEEccCC-ccccHHHHHHHHhCCceE
Confidence 44566788889999999999999988 777888899999989874
No 419
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.42 E-value=1.9e+02 Score=22.89 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=32.6
Q ss_pred CCCchHHHHHHHHHHHCCC-eE-EEEeCCC--ccccHHHHHHHHHhCCCC
Q 025360 143 CPAIPGVLVLFNKLIESGL-KV-ILVTGRD--EETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~-~i-~~vTgR~--~e~~r~~T~~~L~~~G~~ 188 (254)
....+.+.++++.|+++|. .+ +++-|.. .+..++..++.|+++|+.
T Consensus 61 t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 61 GHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred cCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 4566778888999999986 44 5666652 134455667889999996
No 420
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=24.38 E-value=2.3e+02 Score=22.20 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHCCCeEEEEeCCCcc----ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEc
Q 025360 153 FNKLIESGLKVILVTGRDEE----TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIG 228 (254)
Q Consensus 153 l~~L~~~G~~i~~vTgR~~e----~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IG 228 (254)
++.+++.-...+++||.... ...+...+.|.+.|++. ..+++-+. ..+....-...+.-+.+.|.+.++.|-
T Consensus 30 ~~L~~~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~-~~I~~e~~---s~~T~ena~~~~~~~~~~~~~~iilVT 105 (155)
T PF02698_consen 30 ARLYKAGYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPE-ERIILEPK---STNTYENARFSKRLLKERGWQSIILVT 105 (155)
T ss_dssp HHHHH-HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---G-GGEEEE-------SHHHHHHHHHHHHHT-SSS-EEEE-
T ss_pred HHHHhcCCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccch-heeEccCC---CCCHHHHHHHHHHHHHhhcCCeEEEEC
Confidence 33334433567888884311 12456667888889984 56655332 111112222233445566766666776
Q ss_pred CCcc
Q 025360 229 DQWS 232 (254)
Q Consensus 229 Dq~s 232 (254)
+..+
T Consensus 106 ~~~H 109 (155)
T PF02698_consen 106 SPYH 109 (155)
T ss_dssp -CCC
T ss_pred CHHH
Confidence 6543
No 421
>PRK02947 hypothetical protein; Provisional
Probab=24.36 E-value=95 Score=27.14 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-.+.+.++++.++++|.+++.+|+..
T Consensus 117 G~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 117 GRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 345788999999999999999999986
No 422
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=24.35 E-value=2.4e+02 Score=26.52 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTg 168 (254)
...+|...++++.|+++|+++++...
T Consensus 79 ~~~FPd~~~~~~~l~~~G~~~~~~~~ 104 (441)
T PF01055_consen 79 PERFPDPKQMIDELHDQGIKVVLWVH 104 (441)
T ss_dssp TTTTTTHHHHHHHHHHTT-EEEEEEE
T ss_pred cccccchHHHHHhHhhCCcEEEEEee
Confidence 34678889999999999999875443
No 423
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=23.95 E-value=3.2e+02 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
-+|...|+++|++=++++|=..+.|-..|...+...||.
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~ 165 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFE 165 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCE
Confidence 467777888888888888876466677788777777764
No 424
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.83 E-value=1.7e+02 Score=25.54 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 142 GCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 142 ~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
..++.-.+..+++.|++.|. +|.++|-=. +..-+...++|++.||.
T Consensus 101 g~p~tt~~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~~~l~~~G~e 147 (239)
T TIGR02990 101 GTPVVTPSSAAVDGLAALGVRRISLLTPYT-PETSRPMAQYFAVRGFE 147 (239)
T ss_pred CCCeeCHHHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHHhCCcE
Confidence 46888899999999999996 788999988 77777778899999997
No 425
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=23.80 E-value=3.1e+02 Score=25.43 Aligned_cols=72 Identities=13% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCCceEEEecCCcc---ccchhhhhhhccCCCCCChHHHHHHHHhC----CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 99 DGMDAWILDVDDTC---ISNVYYYKGKRYGCDPYDPAGFRAWALKG----GCPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 99 ~~~~avIfDIDgTl---l~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
....+++|+.|++= ++....-....-|.-.|.+++.-+..+++ +.||+.=..|++..|.+.+.+.++|.|-.
T Consensus 91 ~~~~g~~~~~d~~~dg~~~~~~~~~~~l~GdGDFrS~E~i~Ll~eADIVVTNPPFSLFrEyv~~Li~~~KkFlIIGN~N 169 (336)
T PF13651_consen 91 TPKKGYIFEYDGNGDGKIDIDDIEVTPLKGDGDFRSDECIELLKEADIVVTNPPFSLFREYVAQLIEYDKKFLIIGNIN 169 (336)
T ss_pred cccceEEEEEecCCcccccccccceeeccCCCCcCcHHHHHHHhcCCEEEeCCCcHHHHHHHHHHHHhCCCEEEEeccc
Confidence 34567889888741 11111100111233357777777766665 46899999999999999999999999987
No 426
>smart00463 SMR Small MutS-related domain.
Probab=23.78 E-value=1.7e+02 Score=20.43 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHHCCC--eEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGL--KVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~--~i~~vTgR~ 170 (254)
.++.-+.++++.+++.|. .+-++||+-
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G 41 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKG 41 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEccc
Confidence 355666788889999996 788999986
No 427
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=5.5e+02 Score=23.22 Aligned_cols=152 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHhhh-cCCcchHHHHHHHHHHHHHHHHhhh---cCC--CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHH
Q 025360 65 RYVESYM-IGGQYDRDVELVVEQILCYVNEVVL---SGD--GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWA 138 (254)
Q Consensus 65 ~~v~~y~-~~~~Y~~d~~~v~~~a~~y~~~~~~---~~~--~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~ 138 (254)
+.++.|. ....|..--+...+.|++++..++. ... -+.|+..-|=|-++|. |...|.+..+.+-+
T Consensus 59 r~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~~~~~~~dl~~Avk~ai~GN~iDf---------gv~G~~~~~lee~~ 129 (285)
T COG1578 59 REVYKILGNEDPYKEYKRRANEIALKVLPKVRENIEDTPEDLKTAVKLAIVGNVIDF---------GVLGFSPFDLEEEV 129 (285)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcceee---------ccccCCHhHHHHHH
Q ss_pred Hh--CCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHH
Q 025360 139 LK--GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQ 215 (254)
Q Consensus 139 ~~--~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~ 215 (254)
.+ ...--+....++++.|+.+ +|++++.+.+|-+ -....+-+++.|.. --.++|+ .++.-....+.
T Consensus 130 ~~~~~~~l~i~d~~k~~~~l~~a--~VlYl~DNaGEi~FD~vlie~ik~~~~~--vv~vVrg-------~PIlnDaT~ED 198 (285)
T COG1578 130 EKLLDAELYIDDSPKLLELLKNA--SVLYLTDNAGEIVFDKVLIEVIKELGKK--VVVVVRG-------GPILNDATMED 198 (285)
T ss_pred HHhhcCcccccchHHHHHHhccC--cEEEEecCCccHHHHHHHHHHHHhcCCc--eEEEEcC-------CceechhhHHH
Q ss_pred HHHcCCcEEEEEcCCcccccc
Q 025360 216 LLEEGYRIWGNIGDQWSDLQG 236 (254)
Q Consensus 216 l~~~Gy~i~~~IGDq~sDi~g 236 (254)
+...|...+.-|.++=+|..|
T Consensus 199 ak~~~i~~i~~vittG~~~vG 219 (285)
T COG1578 199 AKEAGIDEIAKVITTGSDIVG 219 (285)
T ss_pred HHHcCcchhheeecCCCCcce
No 428
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.72 E-value=1.9e+02 Score=20.37 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHH-HCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLI-ESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~-~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.+|...++.+.++ ..++.++.||.-. . ++...+.+++.+.+
T Consensus 19 ~~~~l~~l~~~~~~~~~v~~v~Vs~d~-~--~~~~~~~~~~~~~~ 60 (95)
T PF13905_consen 19 ELPKLKELYKKYKKKDDVEFVFVSLDE-D--EEEWKKFLKKNNFP 60 (95)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEE-SS-S--HHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEeCC-C--HHHHHHHHHhcCCC
Confidence 5677788888888 6789999998854 2 67788888988776
No 429
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=23.67 E-value=1.5e+02 Score=27.75 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 76 YDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 76 Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
+..-...+.+++..+.+.+....-.-.+++||.||.++-.
T Consensus 315 ~~~~~~~ia~~~~~~~~~~~~~~~~v~vvl~d~~g~~l~~ 354 (361)
T PRK00075 315 GEKLYDRIAERILERAREYVGGSIEVGVVLFDRDGQILGR 354 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEEEEeCCCCEEEE
Confidence 4344666666777666554433334578999999999864
No 430
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=23.64 E-value=2.7e+02 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.+..++|.++|++++++|-.. ++......+..++.+..
T Consensus 63 KayA~eLAkrG~nvvLIsRt~-~KL~~v~kEI~~~~~ve 100 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQ-EKLEAVAKEIEEKYKVE 100 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHHHHHHHHHhCcE
Confidence 345668889999988887666 88877777888888854
No 431
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=23.53 E-value=1.4e+02 Score=29.60 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=13.5
Q ss_pred CCcchHHHHHHHHHHHHHh
Q 025360 1 MMQPIKEVLLFLLLAIFSK 19 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (254)
|||.+..+.|.|+++|+..
T Consensus 4 ~~~~~~~~~~~~ll~~~~~ 22 (539)
T PLN02995 4 MMQKISFLSLHLLLLLLLC 22 (539)
T ss_pred HhhhhhHHHHHHHHHHHHH
Confidence 7898888877776665444
No 432
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.44 E-value=3.8e+02 Score=24.46 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=48.5
Q ss_pred HHHHHCCCeEEEEeCCCc-cccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcC-Cc
Q 025360 154 NKLIESGLKVILVTGRDE-ETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGD-QW 231 (254)
Q Consensus 154 ~~L~~~G~~i~~vTgR~~-e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGD-q~ 231 (254)
+.++..|-+++++|++.. ....+...+.|++.|+. +. .+..-. +.|...--....+...+.+.+.++.||= +.
T Consensus 16 ~~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~-~~-~~~~~~---~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 16 EVCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIE-IT-DFIWYG---GESTYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred HHHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCe-EE-EEEecC---CCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 455566789999999741 12244556678888885 21 221111 1121111223333445567777888886 44
Q ss_pred ccccccc---cCCcEEEeCC
Q 025360 232 SDLQGEC---TGNRTFKLPN 248 (254)
Q Consensus 232 sDi~ga~---~g~r~fklPN 248 (254)
.|+..+- .|...+.+|.
T Consensus 91 ~D~aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 91 IDTVKVLADKLGKPVFTFPT 110 (345)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 5765443 3556666663
No 433
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=23.36 E-value=44 Score=31.02 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=14.2
Q ss_pred CCCceEEEecCCcccc
Q 025360 99 DGMDAWILDVDDTCIS 114 (254)
Q Consensus 99 ~~~~avIfDIDgTll~ 114 (254)
+..++|.||+|.||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 4588999999999996
No 434
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.34 E-value=1.7e+02 Score=26.01 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA 198 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~ 198 (254)
...+..||-...=+.|.+.|++++++|..+ ... ..+.|++.||- | +++..+
T Consensus 67 sPN~~~PGP~~ARE~l~~~~iP~IvI~D~p-~~k---~kd~l~~~g~G-Y--Iivk~D 117 (276)
T PF01993_consen 67 SPNAAAPGPTKAREMLSAKGIPCIVISDAP-TKK---AKDALEEEGFG-Y--IIVKAD 117 (276)
T ss_dssp -S-TTSHHHHHHHHHHHHSSS-EEEEEEGG-GGG---GHHHHHHTT-E-E--EEETTS
T ss_pred CCCCCCCCcHHHHHHHHhCCCCEEEEcCCC-chh---hHHHHHhcCCc-E--EEEecC
Confidence 456788888877778899999999999988 322 25789999985 4 566654
No 435
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=23.24 E-value=5e+02 Score=22.86 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred CCCCceEEEecCCccccchhhhhhhc--cCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCe------EEEEeCC
Q 025360 98 GDGMDAWILDVDDTCISNVYYYKGKR--YGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLK------VILVTGR 169 (254)
Q Consensus 98 ~~~~~avIfDIDgTll~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~------i~~vTgR 169 (254)
-....++||=--||--....+|+-.. +....|++ +--.....+|.+-.++++|+++|++ +.++-|.
T Consensus 134 l~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~------v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~ 207 (265)
T COG4822 134 LNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDN------VFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGD 207 (265)
T ss_pred cCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCc------eEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeech
Confidence 34678899999999887766665422 11111211 0012457899999999999999864 3455554
Q ss_pred Cccc------cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH
Q 025360 170 DEET------FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 170 ~~e~------~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~ 218 (254)
. .. -...-...|++.||+. +.++.+-++..-=..+|..-+..+++.
T Consensus 208 H-a~nDMasddedswk~il~~~G~~v--~~~l~GLGE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 208 H-AKNDMASDDEDSWKNILEKNGFKV--EVYLHGLGENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred h-hhhhhcccchHHHHHHHHhCCcee--EEEeecCCCcHHHHHHHHHHHHHHHhh
Confidence 3 11 1133356788999983 678877664321012444444444443
No 436
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.23 E-value=5.8e+02 Score=23.34 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=45.8
Q ss_pred HHHHHHHHCC-CeEEEEeCCCcc--ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDEE--TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI 227 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~e--~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I 227 (254)
++-..+++.| -+++++|++... ...+...+.|++.|+. + .++.+. ...|...--....+.+.+.+.+.++.|
T Consensus 13 ~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~-~--~~~~~~--~~~p~~~~v~~~~~~~~~~~~d~Iiai 87 (370)
T cd08551 13 KLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIE-V--VIFDGV--EPNPTLSNVDAAVAAYREEGCDGVIAV 87 (370)
T ss_pred HHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCe-E--EEECCC--CCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444566666 588899987611 2345677888888875 2 222221 111222222334444556677888888
Q ss_pred cC-Cccccccc
Q 025360 228 GD-QWSDLQGE 237 (254)
Q Consensus 228 GD-q~sDi~ga 237 (254)
|- +.-|+..+
T Consensus 88 GGGs~~D~AK~ 98 (370)
T cd08551 88 GGGSVLDTAKA 98 (370)
T ss_pred CCchHHHHHHH
Confidence 87 44576543
No 437
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=85 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
+...++|..+++++++-+.-- =.++|+.. |.++++||++.+.
T Consensus 54 edg~~m~ESlDIV~y~d~~~~-~~~lt~~~----~pai~~wlrkv~~ 95 (215)
T COG2999 54 EDGRAMPESLDIVHYVDELDG-KPLLTGKV----RPAIEAWLRKVNG 95 (215)
T ss_pred cccccchhhhHHHHHHHHhcC-chhhccCc----CHHHHHHHHHhcc
Confidence 456799999999999887732 34577877 8999999998754
No 438
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=23.12 E-value=1.5e+02 Score=24.40 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH
Q 025360 150 LVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~ 218 (254)
.++++.+++.|++++++|... ..-.+...++|+. . .-+++.+.+ - -|+.+...|..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~-~~g~~~l~~~l~~---k--~~vl~G~SG-v------GKSSLiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKT-GEGIEELKELLKG---K--TSVLLGQSG-V------GKSSLINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTT-TTTHHHHHHHHTT---S--EEEEECSTT-S------SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCC-CcCHHHHHHHhcC---C--EEEEECCCC-C------CHHHHHHHHHh
Confidence 367788999999999999987 5555555556654 2 123444333 2 35666666654
No 439
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=22.79 E-value=1.8e+02 Score=22.13 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHCC---CeEEEEeCCCcc-ccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESG---LKVILVTGRDEE-TFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G---~~i~~vTgR~~e-~~r~~T~~~L~~~G~~ 188 (254)
.++...++.+.++++| +.++.||.-+ + ...+...+.+++.|..
T Consensus 41 ~l~~l~~~~~~~~~~~~~~v~~v~vs~d~-~~d~~~~~~~~~~~~~~~ 87 (142)
T cd02968 41 TLANLAQALKQLGADGGDDVQVVFISVDP-ERDTPEVLKAYAKAFGPG 87 (142)
T ss_pred HHHHHHHHHHHhhHhhcCceEEEEEEECC-CCCCHHHHHHHHHHhCCC
Confidence 4566777788888876 9999999755 3 3356667788888854
No 440
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=22.69 E-value=1.1e+02 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~ 170 (254)
+.++.+.|.++|+++.++|.+.
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 4688999999999999999887
No 441
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=22.60 E-value=1.6e+02 Score=21.93 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+..+.++|.++|++++.=+... .+...+.++++|+.
T Consensus 41 ~~~~~~~L~~~g~P~Y~hv~~~----N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGHVDED----NEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHHHCCCCeEeehHhc----cHHHHHHHHHCCCe
Confidence 4567889999999999888776 66777788888875
No 442
>PLN02512 acetylglutamate kinase
Probab=22.53 E-value=4.6e+02 Score=23.68 Aligned_cols=28 Identities=4% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360 83 VVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115 (254)
Q Consensus 83 v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~ 115 (254)
+..++..|+..+. .+.+|+=+.|++++.
T Consensus 34 ~~r~~~pyi~~~~-----~~tiVIKlGGs~i~d 61 (309)
T PLN02512 34 ILSEALPFIQRFR-----GKTVVVKYGGAAMKD 61 (309)
T ss_pred HHHHHhHHHHHHC-----CCeEEEEECCeeccC
Confidence 3445666665554 357889999999864
No 443
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.44 E-value=1.1e+02 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
.-.+.+.++++.++++|.+++.+|+..
T Consensus 198 G~t~~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 198 GRTSDVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345789999999999999999999988
No 444
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=22.41 E-value=2e+02 Score=29.48 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CC-cEEEecC------------------CCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YE-RLIMRTA------------------ADK 201 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~-~lilr~~------------------~~~ 201 (254)
+||-....+.++.....|..|-.+||-. +....+.=+++|... |. .-.+... +..
T Consensus 491 dpprhdsa~tirral~lGv~Vkmitgdq----laI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfA 566 (942)
T KOG0205|consen 491 DPPRHDSAETIRRALNLGVNVKMITGDQ----LAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFA 566 (942)
T ss_pred CCCccchHHHHHHHHhccceeeeecchH----HHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCcc
Confidence 4667788899999999999999999976 444444445555431 21 1112111 111
Q ss_pred CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360 202 GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 202 ~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~ 238 (254)
+ -.+..|.++-+.|++.| .+|++.||..+|--+-+
T Consensus 567 g-VfpehKy~iV~~Lq~r~-hi~gmtgdgvndapaLK 601 (942)
T KOG0205|consen 567 G-VFPEHKYEIVKILQERK-HIVGMTGDGVNDAPALK 601 (942)
T ss_pred c-cCHHHHHHHHHHHhhcC-ceecccCCCcccchhhc
Confidence 1 01355677777777765 48999999999865443
No 445
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.39 E-value=5.5e+02 Score=23.11 Aligned_cols=72 Identities=25% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCeEE------------EEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHH
Q 025360 150 LVLFNKLIESGLKVI------------LVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLL 217 (254)
Q Consensus 150 ~ell~~L~~~G~~i~------------~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~ 217 (254)
...++.|+++|++++ .+==|. ......+.+.|++.|+. ++ |...|.+.--...-+++.
T Consensus 44 ~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirA-HGv~~~~~~~~~~~g~~----vi-----DaTCP~V~k~~~~v~~~~ 113 (281)
T PRK12360 44 NQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRS-HGVSKKVYKDLKDKGLE----II-----DATCPFVKKIQNIVEEYY 113 (281)
T ss_pred HHHHHHHHHCcCEEECcCchhhCCCCCEEEEeC-CCCCHHHHHHHHHCCCe----EE-----eCCCccchHHHHHHHHHH
Q ss_pred HcCCcEEEEEcCCcc
Q 025360 218 EEGYRIWGNIGDQWS 232 (254)
Q Consensus 218 ~~Gy~i~~~IGDq~s 232 (254)
+.||.+++ +||..+
T Consensus 114 ~~Gy~ivi-iG~~~H 127 (281)
T PRK12360 114 NKGYSIII-VGDKNH 127 (281)
T ss_pred hCCCEEEE-EcCCCC
No 446
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.25 E-value=61 Score=28.37 Aligned_cols=29 Identities=10% Similarity=-0.185 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCC-----cEEEEEcCCcccccccc
Q 025360 210 SEIRKQLLEEGY-----RIWGNIGDQWSDLQGEC 238 (254)
Q Consensus 210 ~~~r~~l~~~Gy-----~i~~~IGDq~sDi~ga~ 238 (254)
.+++.-++..|. ..++.|||+.||+.--.
T Consensus 190 ~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~ 223 (271)
T PRK03669 190 QAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLD 223 (271)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHH
Confidence 344444455665 46999999999995444
No 447
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=22.24 E-value=1.8e+02 Score=22.36 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
.|...++.+.++.+|+.++.|+... . ....+++++.+++
T Consensus 48 ~p~l~~l~~~~~~~~v~~v~v~~~~-~---~~~~~~~~~~~~~ 86 (146)
T PF08534_consen 48 LPYLNELQEKYKDKGVDVVGVSSDD-D---PPVREFLKKYGIN 86 (146)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESS-S---HHHHHHHHHTTTT
T ss_pred hhhHHhhhhhhccCceEEEEecccC-C---HHHHHHHHhhCCC
Confidence 3455666667788999998888777 3 2377888888776
No 448
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=22.07 E-value=1.2e+02 Score=19.66 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=19.3
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 025360 2 MQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMP 34 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (254)
|.|--++.+|+..+|++...- +.+..|..+
T Consensus 4 me~A~~~~i~i~~lL~~~Tgy---aiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGF---GIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhh---eeeeccCCc
Confidence 677778888888887766222 245555555
No 449
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=22.07 E-value=3.6e+02 Score=25.33 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=55.5
Q ss_pred CCeEEEEeCCCcc-ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc---EEEEEcCCc-ccc
Q 025360 160 GLKVILVTGRDEE-TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR---IWGNIGDQW-SDL 234 (254)
Q Consensus 160 G~~i~~vTgR~~e-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~---i~~~IGDq~-sDi 234 (254)
|.+++++|+..-. -..+.....|.+.|+.. .. +.-+++++.|.- .-...+...|.+.|+. .++.+|-.. .|+
T Consensus 33 ~~k~~ivtd~~v~~~y~~~~~~~l~~~g~~v-~~-~~lp~GE~~Ksl-~~~~~i~~~ll~~~~~R~s~iialGGGvigDl 109 (360)
T COG0337 33 GRKVAIVTDETVAPLYLEKLLATLEAAGVEV-DS-IVLPDGEEYKSL-ETLEKIYDALLEAGLDRKSTLIALGGGVIGDL 109 (360)
T ss_pred CCeEEEEECchhHHHHHHHHHHHHHhcCCee-eE-EEeCCCcccccH-HHHHHHHHHHHHcCCCCCcEEEEECChHHHHH
Confidence 4599999998621 12456667788888873 33 444555666542 3345566677777764 466677655 577
Q ss_pred cccc-----cCCcEEEeCC
Q 025360 235 QGEC-----TGNRTFKLPN 248 (254)
Q Consensus 235 ~ga~-----~g~r~fklPN 248 (254)
.|-- .|.+.+.+|.
T Consensus 110 aGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 110 AGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHcCCCeEeccc
Confidence 6643 5899999885
No 450
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=22.04 E-value=3.6e+02 Score=26.47 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=15.5
Q ss_pred cc-cchHHHHHhhhcCCcchHHHHHHHHHH
Q 025360 59 VP-TQCLRYVESYMIGGQYDRDVELVVEQI 87 (254)
Q Consensus 59 ~p-~~c~~~v~~y~~~~~Y~~d~~~v~~~a 87 (254)
.| .+|++.+..++ ++|..+--.+.++|
T Consensus 321 ~~e~eaKe~L~~~I--~~~i~eki~~A~qa 348 (556)
T KOG1467|consen 321 LSESEAKEELQSDI--DRFIAEKIILADQA 348 (556)
T ss_pred CChHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45 68887777766 34555444444444
No 451
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=21.95 E-value=6.4e+02 Score=23.77 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHHHCC-CeEEEEeCCCccc---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEE
Q 025360 151 VLFNKLIESG-LKVILVTGRDEET---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226 (254)
Q Consensus 151 ell~~L~~~G-~~i~~vTgR~~e~---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~ 226 (254)
++.+.++..| .++.+||.|. -. .-+...+.|+..|+. | .+...- .+.|...--....+.+++.+.+.++.
T Consensus 19 ~l~~~~~~~g~~r~liVTd~~-~~~~g~~~~v~~~L~~~~i~-~--~if~~v--~p~P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 19 ELGEEVKRLGAKRALIVTDRG-LAKLGLLDKVLDSLDAAGIE-Y--EVFDEV--EPEPTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred HHHHHHHhcCCCceEEEECCc-cccchhHHHHHHHHHhcCCe-E--EEecCC--CCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444555556 7899999996 32 345667788888865 2 222221 22222222333455677788887887
Q ss_pred EcCC-cccc
Q 025360 227 IGDQ-WSDL 234 (254)
Q Consensus 227 IGDq-~sDi 234 (254)
+|=. .-|.
T Consensus 93 lGGGS~~D~ 101 (377)
T COG1454 93 LGGGSVIDA 101 (377)
T ss_pred eCCccHHHH
Confidence 8764 3354
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.95 E-value=2e+02 Score=27.72 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ 185 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~ 185 (254)
+-+|-++|+++|.++.+|+.-. +|.+..+.|+.+
T Consensus 117 ~~KLA~~lkk~~~kvllVaaD~---~RpAA~eQL~~L 150 (451)
T COG0541 117 AGKLAKYLKKKGKKVLLVAADT---YRPAAIEQLKQL 150 (451)
T ss_pred HHHHHHHHHHcCCceEEEeccc---CChHHHHHHHHH
Confidence 4466667777777777776633 466666666544
No 453
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=21.73 E-value=6e+02 Score=23.10 Aligned_cols=85 Identities=22% Similarity=0.406 Sum_probs=50.0
Q ss_pred CCeEEEEeCCCccc--cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC---cEEEEEcCCc-cc
Q 025360 160 GLKVILVTGRDEET--FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY---RIWGNIGDQW-SD 233 (254)
Q Consensus 160 G~~i~~vTgR~~e~--~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy---~i~~~IGDq~-sD 233 (254)
+-+++++|+.. -. ..+...+.|++.|+. +..+++.+ .+..|+ ......+.+.+.+.|. ..++.||-.. .|
T Consensus 24 ~~~~livtd~~-~~~~~~~~l~~~L~~~g~~-~~~~~~~~-~e~~~~-~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D 99 (345)
T cd08195 24 GSKILIVTDEN-VAPLYLEKLKAALEAAGFE-VEVIVIPA-GEASKS-LETLEKLYDALLEAGLDRKSLIIALGGGVVGD 99 (345)
T ss_pred CCeEEEEECCc-hHHHHHHHHHHHHHhcCCc-eEEEEeCC-CCCcCC-HHHHHHHHHHHHHcCCCCCCeEEEECChHHHh
Confidence 46889999875 21 244556778888886 33333332 222222 2222334455666676 6788888854 58
Q ss_pred ccccc-----cCCcEEEeCC
Q 025360 234 LQGEC-----TGNRTFKLPN 248 (254)
Q Consensus 234 i~ga~-----~g~r~fklPN 248 (254)
+.+.- .|...+.+|.
T Consensus 100 ~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 100 LAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHHHhcCCCeEEcch
Confidence 87654 3677777775
No 454
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.51 E-value=4.5e+02 Score=21.38 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC
Q 025360 144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ 185 (254)
Q Consensus 144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~ 185 (254)
....=+.++++.+.++|.+|+++-+++ +... ...++|++.
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~~-~~~~-~~~~~l~~~ 71 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGSE-EVLE-KAAANLRRR 71 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCH-HHHH-HHHHHHHHH
Confidence 344455688888889999999999988 5443 445566654
No 455
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=21.44 E-value=4.2e+02 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG 189 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~ 189 (254)
......++.++++++|.++.++--++ ...+.|++.|+.+
T Consensus 511 g~~~L~~l~~~l~~~g~~l~l~~~~~------~v~~~l~~~gl~~ 549 (563)
T TIGR00815 511 GIHALEELRKELKARGIQLLLANPNK------AVRSTLKRGGLVE 549 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCh------HHHHHHHHCCchh
Confidence 45556788999999999999887655 5667888888854
No 456
>CHL00020 psbN photosystem II protein N
Probab=21.29 E-value=1.2e+02 Score=19.46 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=19.4
Q ss_pred CcchHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 025360 2 MQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMP 34 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (254)
|+|--++.+|+..+|++...- +.+..|..+
T Consensus 1 me~A~~~~i~i~~ll~~~Tgy---~iYtaFGpp 30 (43)
T CHL00020 1 METATLVAIFISGLLVSFTGY---ALYTAFGQP 30 (43)
T ss_pred CCchhhHHHHHHHHHHHhhhe---eeeeccCCc
Confidence 677778888888888776222 245555555
No 457
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.22 E-value=1.1e+02 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 147 PGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+...++.+.|.+.|++++ .|. .|.++|++.|++
T Consensus 13 ~~~~~~~~~l~~~G~~l~-aT~--------gT~~~l~~~gi~ 45 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV-ATE--------GTAKYLQEAGIP 45 (110)
T ss_pred hHHHHHHHHHHHCCCEEE-Ech--------HHHHHHHHcCCe
Confidence 456778888888999886 333 355778888886
No 458
>PTZ00056 glutathione peroxidase; Provisional
Probab=21.05 E-value=2e+02 Score=24.21 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHCCCeEEEEeCC----CccccHHHHHHHHHhCCCC
Q 025360 145 AIPGVLVLFNKLIESGLKVILVTGR----DEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 145 ~~pg~~ell~~L~~~G~~i~~vTgR----~~e~~r~~T~~~L~~~G~~ 188 (254)
-+|...++.+.++++|+.|+-++.. .+....+...+++++.|++
T Consensus 57 e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~ 104 (199)
T PTZ00056 57 HVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK 104 (199)
T ss_pred HHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC
Confidence 4677788888888999999988742 1012256677888999986
No 459
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=21.04 E-value=1.1e+02 Score=26.80 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.6
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
..-.+.+.+.++.++++|.+|+.+|+.+
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~ 212 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFT 212 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3456788899999999999999999987
No 460
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=20.96 E-value=1.4e+02 Score=21.95 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhccCC
Q 025360 8 VLLFLLLAIFSKATGT 23 (254)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (254)
+.+|+++++.+|+-+.
T Consensus 51 ~~lF~iL~~ms~sgsp 66 (90)
T PF15183_consen 51 VFLFLILLYMSWSGSP 66 (90)
T ss_pred HHHHHHHHHHhccCCC
Confidence 4455555567885444
No 461
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=20.93 E-value=79 Score=25.11 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=31.6
Q ss_pred CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCch-HHHHHHHHHHHCCCeEEEEeC
Q 025360 99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIP-GVLVLFNKLIESGLKVILVTG 168 (254)
Q Consensus 99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-g~~ell~~L~~~G~~i~~vTg 168 (254)
..+..|+||+.+|+-.-..- .+....++++.+.... -+- ...+.|......+.-|+++|.
T Consensus 43 ~~P~iV~FDmK~Tld~F~~Q-----~~~~~lte~q~e~lt~-----rF~~aL~~~L~~yq~~H~~VILVsp 103 (128)
T PRK13717 43 NAPVTAAFNMKQTVDAFFDS-----ASQKQLSEAQSKALSA-----RFNTALEASLQAWQQKHHAVILVSP 103 (128)
T ss_pred CCCeEEEEehHHHHHHHHHH-----HhccCCCHHHHHHHHH-----HHHHHHHHHHHHHHHhCCEEEEech
Confidence 45889999999987543211 1222233322222111 111 223456667777777777765
No 462
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.90 E-value=1.3e+02 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360 143 CPAIPGVLVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~ 170 (254)
..-.+.+.++++.++++|.+++.+|+..
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~ 219 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLA 219 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3456889999999999999999999988
No 463
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=20.89 E-value=4.5e+02 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=16.2
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 025360 150 LVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~ 170 (254)
.++.+.+++.|++|.+|.=..
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~ 146 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSA 146 (183)
T ss_pred HHHHHHHHHcCcEEEEEEech
Confidence 456778888899988877655
No 464
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.86 E-value=4.2e+02 Score=20.78 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCcccc---HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEE
Q 025360 149 VLVLFNKLIESGLKVILVTGRDEETF---GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWG 225 (254)
Q Consensus 149 ~~ell~~L~~~G~~i~~vTgR~~e~~---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~ 225 (254)
..++++..++.+..++.+|+-. ..+ -..+.+-|++.|.+. ..++..+.- | ...+..+.+.|..-++
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~-~~~~~~~~~~~~~L~~~g~~~-i~vivGG~~----~-----~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLA-GGHLTLVPALRKELDKLGRPD-ILVVVGGVI----P-----PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCch-hhhHHHHHHHHHHHHhcCCCC-CEEEEeCCC----C-----hHhHHHHHHCCCCEEE
Confidence 3466777778888888888876 433 234455667777642 234444321 1 1223457777887777
Q ss_pred EEcCCcccccc
Q 025360 226 NIGDQWSDLQG 236 (254)
Q Consensus 226 ~IGDq~sDi~g 236 (254)
..|.+..++..
T Consensus 111 ~~gt~~~~i~~ 121 (132)
T TIGR00640 111 GPGTPIPESAI 121 (132)
T ss_pred CCCCCHHHHHH
Confidence 77776665543
No 465
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.78 E-value=1e+02 Score=23.15 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=25.8
Q ss_pred hHHHHHhhhcCCcchHHHHHHHHHHHHHHHH
Q 025360 63 CLRYVESYMIGGQYDRDVELVVEQILCYVNE 93 (254)
Q Consensus 63 c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~ 93 (254)
=++.++.=+.+|.|..|...|.+-...|+++
T Consensus 62 kVeeiK~aI~~G~ykvD~~kiAd~ll~f~~~ 92 (93)
T COG2747 62 KVEELKQAIENGEYKVDTEKIADKLLDFAKQ 92 (93)
T ss_pred HHHHHHHHHHcCCeeecHHHHHHHHHHHHhc
Confidence 3566788899999999999999988888753
No 466
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=20.72 E-value=91 Score=20.44 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHC
Q 025360 133 GFRAWALKGGCPAIPGVLVLFNKLIES 159 (254)
Q Consensus 133 ~~~~~~~~~~~~~~pg~~ell~~L~~~ 159 (254)
.|++|+.-+.-|.-..+.+.++.+-.+
T Consensus 19 dWd~wvSf~GrPltdevK~a~k~i~~~ 45 (49)
T PF06543_consen 19 DWDKWVSFDGRPLTDEVKEAMKLIFGK 45 (49)
T ss_pred chHHheeeCCeeCCHHHHHHHHHHHhh
Confidence 499999988888888999988877543
No 467
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.54 E-value=3.8e+02 Score=20.19 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHC---CCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360 147 PGVLVLFNKLIES---GLKVILVTGRDEETFGQVTRDNLHNQGFV 188 (254)
Q Consensus 147 pg~~ell~~L~~~---G~~i~~vTgR~~e~~r~~T~~~L~~~G~~ 188 (254)
+...+++..+.+. ++++.+.|+-. ... ....+.|.++|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~-~~~-~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGT-LLD-EELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEEST-THC-HHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHhhccccceeeecccc-chh-HHHHHHHHhcCcc
Confidence 4445566666654 99999999988 322 6778899999954
No 468
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=20.42 E-value=1.3e+02 Score=20.32 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360 154 NKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF 187 (254)
Q Consensus 154 ~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~ 187 (254)
+.|++.|+++..++++.....|....+.++.-..
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~ 34 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI 34 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc
Confidence 4688999999999997634446666666555433
No 469
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.41 E-value=4.9e+02 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 025360 150 LVLFNKLIESGLKVILVTGRD 170 (254)
Q Consensus 150 ~ell~~L~~~G~~i~~vTgR~ 170 (254)
.+.++.|++.|...+-||-.+
T Consensus 18 ~~~~~~l~~~~pd~isvT~~~ 38 (272)
T TIGR00676 18 WETVDRLSPLDPDFVSVTYGA 38 (272)
T ss_pred HHHHHHHhcCCCCEEEeccCC
Confidence 333444444444444444443
Done!