Query 025361
Match_columns 254
No_of_seqs 169 out of 666
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 2.6E-34 9E-39 239.1 16.3 125 71-200 11-135 (147)
2 1z9l_A Vesicle-associated memb 100.0 1.6E-33 5.5E-38 228.6 16.4 121 71-196 7-127 (128)
3 1wic_A Hypothetical protein ri 100.0 1.3E-33 4.4E-38 236.8 13.1 129 71-207 15-148 (152)
4 1msp_A MSP, major sperm protei 100.0 1.5E-29 5.2E-34 205.8 15.5 118 72-196 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 3.6E-27 1.2E-31 188.3 13.4 104 75-194 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 2.1E-26 7.2E-31 186.1 14.4 105 74-194 10-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.0 2.1E-05 7.2E-10 62.0 8.9 78 75-164 26-104 (122)
8 3qbt_B Inositol polyphosphate 97.7 0.00014 4.8E-09 59.3 9.3 68 73-141 25-99 (140)
9 2e6j_A Hydin protein; PAPD, st 97.6 0.00023 7.8E-09 54.4 7.9 67 73-140 8-78 (112)
10 3qis_A Inositol polyphosphate 97.3 0.00099 3.4E-08 62.0 9.3 69 73-142 28-103 (366)
11 2qsv_A Uncharacterized protein 95.3 0.057 2E-06 46.3 8.2 64 75-140 3-67 (220)
12 2qsv_A Uncharacterized protein 94.5 0.14 4.8E-06 43.8 8.5 66 72-140 117-183 (220)
13 3q48_A Chaperone CUPB2; IG fol 92.3 1.9 6.6E-05 38.2 12.3 110 75-200 30-149 (257)
14 2xg5_A PAPD, chaperone protein 87.5 9.8 0.00033 32.7 12.5 109 75-198 2-118 (218)
15 2co7_B SAFB chaperone, putativ 83.6 7.3 0.00025 33.5 9.8 115 75-200 14-135 (221)
16 1l4i_A SFAE protein; periplasm 82.7 21 0.00072 30.2 13.9 112 75-200 2-120 (206)
17 4djm_A DRAB; chaperone, PILI; 80.4 9.3 0.00032 33.4 9.3 62 75-140 24-90 (239)
18 2g30_A AP-2 complex subunit be 75.9 4.8 0.00016 35.7 6.1 55 85-141 50-110 (258)
19 3gfu_C Chaperone protein FAEE; 75.2 40 0.0014 29.2 12.6 106 75-198 2-114 (224)
20 4ay0_A Chaperone protein CAF1M 74.9 40 0.0014 28.9 13.1 109 75-199 14-129 (218)
21 1yew_A Particulate methane mon 73.7 18 0.0006 34.2 9.5 68 70-140 245-334 (382)
22 1klf_A FIMC chaperone, chapero 71.2 46 0.0016 28.1 13.7 112 75-200 2-120 (205)
23 3rfr_A PMOB; membrane, oxidore 65.7 16 0.00055 34.8 7.5 65 73-141 282-367 (419)
24 2lll_A Lamin-B2; immunoglobuli 65.5 10 0.00036 30.8 5.4 42 96-137 35-82 (139)
25 3jt0_A Lamin-B1; structural ge 63.9 15 0.00053 29.9 6.2 42 96-137 39-85 (144)
26 1gyu_A Adapter-related protein 62.8 23 0.0008 28.4 7.1 42 91-132 47-92 (140)
27 2r39_A FIXG-related protein; s 62.5 29 0.001 26.4 7.4 59 82-140 21-81 (118)
28 2npi_A Protein CLP1; CLP1-PCF1 48.8 5.4 0.00018 37.9 1.2 20 72-91 38-57 (460)
29 1uh6_A Ubiquitin-like 5; beta- 44.4 17 0.00059 27.8 3.2 43 39-81 7-49 (100)
30 3idu_A Uncharacterized protein 41.6 55 0.0019 25.8 5.9 52 88-140 30-82 (127)
31 3hs8_A Adaptor protein complex 35.7 61 0.0021 28.7 5.9 51 90-140 67-124 (273)
32 3zy7_A AP-1 complex subunit ga 27.5 2.1E+02 0.0072 22.0 9.5 68 92-167 30-103 (122)
33 3e38_A Two-domain protein cont 26.4 80 0.0027 28.8 5.1 65 95-170 270-334 (343)
34 1klf_A FIMC chaperone, chapero 25.0 1.1E+02 0.0038 25.7 5.5 48 82-138 130-177 (205)
35 2iaa_C Azurin; quinoprotein, t 24.9 84 0.0029 24.5 4.4 63 74-140 11-98 (128)
36 2fvv_A Diphosphoinositol polyp 24.6 1.2E+02 0.004 24.7 5.4 36 97-134 46-81 (194)
37 3vta_A Cucumisin; subtilisin-l 24.0 2.1E+02 0.0072 27.7 8.0 49 92-140 538-589 (621)
38 4ay0_A Chaperone protein CAF1M 23.6 84 0.0029 26.8 4.5 49 82-139 140-188 (218)
39 3hn9_A Lamin-B1; structural ge 22.9 95 0.0032 24.3 4.3 41 96-137 26-72 (123)
40 2ccw_A Azurin II, AZN-2; elect 21.3 96 0.0033 24.2 4.0 63 74-140 12-99 (129)
41 2huh_A Putative DNA mismatch r 21.1 1E+02 0.0035 25.3 4.2 67 93-170 28-94 (147)
42 3isu_A RAS GTPase-activating-l 21.0 23 0.00079 28.2 0.3 40 39-78 3-42 (121)
43 1v76_A RNAse P protein PH1771P 20.7 29 0.001 26.3 0.8 16 229-244 28-44 (96)
44 1wm3_A Ubiquitin-like protein 20.2 96 0.0033 21.3 3.5 21 96-116 3-23 (72)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-34 Score=239.05 Aligned_cols=125 Identities=28% Similarity=0.463 Sum_probs=114.3
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (254)
Q Consensus 71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~ 150 (254)
..++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|+| ++...+
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~- 86 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD- 86 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999999 665432
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361 151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 200 (254)
Q Consensus 151 p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~ 200 (254)
++++|+|||+||++.++++.+++.++|++..+..++++||||+|+.|..
T Consensus 87 -p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~p~~ 135 (147)
T 2cri_A 87 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFEMPNE 135 (147)
T ss_dssp -TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCTTTCEEEEEEEEEECSCC
T ss_pred -ccccCCCEEEEEEEEcCCCcccHHHHhhcCCCCceEEEEEEEEEecCCC
Confidence 3578999999999999988777899999998889999999999987753
No 2
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=1.6e-33 Score=228.56 Aligned_cols=121 Identities=27% Similarity=0.457 Sum_probs=111.2
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (254)
Q Consensus 71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~ 150 (254)
..++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|++ ++....
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~- 82 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD- 82 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence 4578999998899999999999999999999999999999999999999999999999999999999999 665332
Q ss_pred CCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEe
Q 025361 151 PMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFL 196 (254)
Q Consensus 151 p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv 196 (254)
++.+|+|||+||++.++++.+++.++|++.++..++++||||+|.
T Consensus 83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCGGGCEEEEEEEEEE
T ss_pred -cccccCCEEEEEEEECCCCcchHHHHhhcCCCCceEEEEEEEEEe
Confidence 357899999999999998877789999999888999999999995
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=1.3e-33 Score=236.77 Aligned_cols=129 Identities=24% Similarity=0.356 Sum_probs=114.2
Q ss_pred CCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCC
Q 025361 71 KRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEK 150 (254)
Q Consensus 71 ~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~ 150 (254)
+.++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|+| |+.. +
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~- 89 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T- 89 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence 5678999999899999999999999999999999999999999999999999999999999999999999 5543 2
Q ss_pred CCCCCCCCeEEEEEEEeC--CCC--CchhhhhhccCCCcceeEEEEEEEeCC-CCCCchhHH
Q 025361 151 PMYQKSRDKFKIISMKVK--ADV--DYVPELFDEQKDQTAAEQILRVVFLNP-ERPEPALEK 207 (254)
Q Consensus 151 p~~~~~kDKFLIqSv~v~--~~~--d~~~elFk~~~~~~i~e~KLrV~fv~p-~~ps~~~e~ 207 (254)
.+|+|||+||++.++ ++. +++.++|++..+..++++||||+|+++ ++||+++++
T Consensus 90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 478999999999998 443 357899999988899999999999976 455656543
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=1.5e-29 Score=205.79 Aligned_cols=118 Identities=18% Similarity=0.259 Sum_probs=102.2
Q ss_pred CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCC
Q 025361 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKP 151 (254)
Q Consensus 72 ~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p 151 (254)
...|.++|.++|.|++++++++++.|+|+|+|+.+||||||||+|++|||||++|+|+||+++.|.|++ |+...++
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~- 81 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT- 81 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-
Confidence 458999999999999999999999999999999999999999999999999999999999999999999 6655432
Q ss_pred CCCCCCCeEEEEEEEeCCCC--CchhhhhhccCCCcceeEEEEEEEe
Q 025361 152 MYQKSRDKFKIISMKVKADV--DYVPELFDEQKDQTAAEQILRVVFL 196 (254)
Q Consensus 152 ~~~~~kDKFLIqSv~v~~~~--d~~~elFk~~~~~~i~e~KLrV~fv 196 (254)
. ...+|||+||++.++++. |+..+||.. ++ .+..++|+|.|.
T Consensus 82 ~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~-d~-~~~~k~L~V~Yn 125 (126)
T 1msp_A 82 E-DLNNDRITIEWTNTPDGAAKQFRREWFQG-DG-MVRRKNLPIEYN 125 (126)
T ss_dssp S-CCSSCEEEEEEEECCTTCCSSCCTHHHHS-SS-CCEEEEEEEEEE
T ss_pred C-ccCCCEEEEEEEECCCCcchhhhHHhhcC-CC-ceEEEEEEEEec
Confidence 2 345999999999999875 565566643 33 578999999995
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=3.6e-27 Score=188.32 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQ 154 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~ 154 (254)
|.|+|. +|.|.++.+ .+.|+|+|+++.+||||||||+|++|||||+.|+|+||++++|.|++ |+. .
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~ 68 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A 68 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence 789998 699998743 69999999999999999999999999999999999999999999999 542 3
Q ss_pred CCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 025361 155 KSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194 (254)
Q Consensus 155 ~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~ 194 (254)
.++|||+||++.++++..++.++|++... ..+.+|++.
T Consensus 69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 69 PKEDKLVVHFASAPADATDAQAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp CEEEEEEEEEEECCTTCSCHHHHHTTCCC--CEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCCHHHHhhcCCC--CceEEEEEE
Confidence 47999999999998877678999998755 356677664
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.94 E-value=2.1e-26 Score=186.15 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=92.8
Q ss_pred cEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCC
Q 025361 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY 153 (254)
Q Consensus 74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~ 153 (254)
++.++|. +|.|+++.| ++.|+|+|+++.+||||||||+|+.|||||+.|+|+||++++|.|++ |+.
T Consensus 10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~------- 75 (116)
T 1m1s_A 10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG------- 75 (116)
T ss_dssp SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence 5889997 999998754 89999999999999999999999999999999999999999999999 543
Q ss_pred CCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEE
Q 025361 154 QKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVV 194 (254)
Q Consensus 154 ~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~ 194 (254)
..++|||+||++.++++..++.++|++... ..+.+|++.
T Consensus 76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp CSCEEEEEEEEEEECTTCCCTTHHHHTTCC--CEEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHhcCCC--CceEEEEEE
Confidence 246999999999999877667999999765 477788764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=2.1e-05 Score=62.01 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=60.6
Q ss_pred EEecCCCceEeecCC-CCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCC
Q 025361 75 LKLDPANKLYFPYEA-GKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMY 153 (254)
Q Consensus 75 L~IdP~~eL~F~~e~-~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~ 153 (254)
|.+ | +.|.|..-. +......|.|+|.++.++.|++++. .-|.|.|..|.|+||+++.|.|+. .|...
T Consensus 26 l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~----- 93 (122)
T 2ys4_A 26 LDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV----- 93 (122)
T ss_dssp CCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS-----
T ss_pred ECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC-----
Confidence 444 5 488886553 6678899999999999999999985 469999999999999999999998 55431
Q ss_pred CCCCCeEEEEE
Q 025361 154 QKSRDKFKIIS 164 (254)
Q Consensus 154 ~~~kDKFLIqS 164 (254)
......+.|..
T Consensus 94 g~~~~~l~v~~ 104 (122)
T 2ys4_A 94 GDHSGRLIVCY 104 (122)
T ss_dssp BCCCCBCEEEE
T ss_pred ccEEEEEEEEE
Confidence 33455555543
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.75 E-value=0.00014 Score=59.35 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=57.1
Q ss_pred CcEEecCCCceEeec-CCCCeEEEEEEEEcCCCCeEEEEEccc------CCCceeecCCceeeCCCCEEEEEEEec
Q 025361 73 RRLKLDPANKLYFPY-EAGKQVRSAIKIKNTSKSHVAFKFQTT------APKSCFMRPPGAILAPGESLIATVFKF 141 (254)
Q Consensus 73 ~lL~IdP~~eL~F~~-e~~k~~~s~LtL~N~S~~~VAFKVKTT------aPk~Y~VRP~~GiL~PgeS~~I~Vtl~ 141 (254)
.-+.+++. .|.|-. .+++..+..|+|+|++.-+.-|++... .+.-+.|.|..|.|.||+++.|.|+++
T Consensus 25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 45888886 999963 356778999999999999999999753 334588999999999999999999985
No 9
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00023 Score=54.40 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=56.3
Q ss_pred CcEEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEcccCC---CceeecCCceeeCCCCEEEEEEEe
Q 025361 73 RRLKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAP---KSCFMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 73 ~lL~IdP~~eL~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaP---k~Y~VRP~~GiL~PgeS~~I~Vtl 140 (254)
..+.+++. .|.|-.- .+......++|+|+++.++.|++..... ..|.+.|..|.|+||++..|.|++
T Consensus 8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 45888886 7888544 4667889999999999999999964221 469999999999999999999998
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.26 E-value=0.00099 Score=62.01 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=57.4
Q ss_pred CcEEecCCCceEee-cCCCCeEEEEEEEEcCCCCeEEEEEcccCCC-c-----eeecCCceeeCCCCEEEEEEEecc
Q 025361 73 RRLKLDPANKLYFP-YEAGKQVRSAIKIKNTSKSHVAFKFQTTAPK-S-----CFMRPPGAILAPGESLIATVFKFV 142 (254)
Q Consensus 73 ~lL~IdP~~eL~F~-~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk-~-----Y~VRP~~GiL~PgeS~~I~Vtl~v 142 (254)
.-+.+++. .+.|- ..++...+.+|+|+|++.-++.|++.....+ . +.|.|..|+|.||+++.|.|++.+
T Consensus 28 P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 28 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 45888886 99994 3467889999999999999999999754222 2 669999999999999999999854
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.31 E-value=0.057 Score=46.29 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=55.1
Q ss_pred EEecCCCceEeecC-CCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361 75 LKLDPANKLYFPYE-AGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 75 L~IdP~~eL~F~~e-~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl 140 (254)
|+++|. .+.|.-- .|+.....++++|+++.++-++.-.. |..+.+++..+.|+||++..|.|++
T Consensus 3 i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 3 LQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp EEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred eEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 889996 9999754 35566779999999999999987544 7888889999999999999999998
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.51 E-value=0.14 Score=43.83 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEE-EEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361 72 RRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAF-KFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 72 ~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAF-KVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl 140 (254)
...+.++ . .+.|-.-.|......++|+|+++.++.+ +|+|++ +...+.++.+.|+||++..|.|++
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 3458888 5 8988733377888999999999998888 888775 678888899999999999999998
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=92.31 E-value=1.9 Score=38.24 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=66.5
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccC----------CCceeecCCceeeCCCCEEEEEEEecccC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTA----------PKSCFMRPPGAILAPGESLIATVFKFVEL 144 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTa----------Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~q 144 (254)
|.|+|. .+.|+.... ..+|+|.|.++.++.--+-..+ ..-|.|.|+.-.|+||+...|.|.+.
T Consensus 30 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~--- 102 (257)
T 3q48_A 30 LIAQGT-RVVFPASER---EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL--- 102 (257)
T ss_dssp -CCSCS-EEEEETTCS---EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC---
T ss_pred EEEcce-EEEEeCCCc---EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC---
Confidence 667775 677765332 5899999999887655433211 12399999999999999999999872
Q ss_pred CCCCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361 145 PENNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 200 (254)
Q Consensus 145 p~~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~ 200 (254)
.. ..|.|.. --|-+....+++..+. ....-+.....+|++-|-+..-
T Consensus 103 ~~--~LP~DrE--Slf~lnv~eIPp~~~~-----~~n~Lqiair~rIKLFyRP~~L 149 (257)
T 3q48_A 103 KA--PLPTDRE--SLFWLNILEVPPRDED-----ENNALQFSFRSRFKLFFRPSQL 149 (257)
T ss_dssp CC--CCCSSSC--EEEEEEEEEECCC--------------CCEEEEEEEEEECTTC
T ss_pred CC--CCCCCce--eEEEEEeeecCCCCCC-----CCceEEEEEEEEEEEEEecccC
Confidence 11 1122332 3466666666543221 1112234567889998886543
No 14
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=87.47 E-value=9.8 Score=32.67 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=65.3
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEcccC-------CCceeecCCceeeCCCCEEEEEEEecccCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTTA-------PKSCFMRPPGAILAPGESLIATVFKFVELPE 146 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTTa-------Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~ 146 (254)
|.|++. .+.|+.... ..+|+|+|.++. ++.--+-..+ ..-|.|.|+.-.|+||+...|.|.+. ..
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~ 74 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSEK---SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTT---PD 74 (218)
T ss_dssp EEESCS-EEEEETTSS---EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEEC---GG
T ss_pred cEeCce-EEEEeCCCC---EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEec---CC
Confidence 456775 777775433 679999999887 6655543221 23499999999999999999999872 10
Q ss_pred CCCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 025361 147 NNEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 198 (254)
Q Consensus 147 ~~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p 198 (254)
....|.|.. .-|-+....+++..+. ...-+.....+|++-|-+.
T Consensus 75 ~~~lP~DrE--Slf~lnv~eIPp~~~~------~n~lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 75 ISKLPQDRE--SLFYFNLREIPPRSEK------ANVLQIALQTKIKLFYRPA 118 (218)
T ss_dssp GGGSCSSSC--EEEEEEEEEECCCCCC------TTEEEEEEEEEEEEEEECG
T ss_pred CCCCCCCce--EEEEEEeecCCCCCCC------CceEEEEehheeeEEEcCc
Confidence 001123322 3455555555442211 0011234567777777654
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=83.62 E-value=7.3 Score=33.54 Aligned_cols=115 Identities=9% Similarity=0.114 Sum_probs=65.5
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEEecccCCCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFKFVELPENNE 149 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e 149 (254)
|.|++. .+.|+.... ..+|+|.|.++.++.--+-.. ...-|.|.|+.-.|+||+...|.|.+. .. .
T Consensus 14 v~i~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~---~~--~ 84 (221)
T 2co7_B 14 VKLGAT-RVIYHAGTA---GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRT---GG--D 84 (221)
T ss_dssp CEESCS-EEEEETTSS---CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEEC---CC--C
T ss_pred EEEcce-EEEEcCCCC---EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEEC---CC--C
Confidence 556675 677765433 579999999987665444221 123599999999999999999999872 11 1
Q ss_pred CCCCCCCCCeEEEEEEEeCCCCCchhhhhhc--cCCCcceeEEEEEEEeCCCC
Q 025361 150 KPMYQKSRDKFKIISMKVKADVDYVPELFDE--QKDQTAAEQILRVVFLNPER 200 (254)
Q Consensus 150 ~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~--~~~~~i~e~KLrV~fv~p~~ 200 (254)
.|.|.. .-|-+....+++..+...+-=.+ ..-+.....+|++-|-+..-
T Consensus 85 lP~DrE--slf~lnv~eIPp~~~~~~~~~~n~~~~lqia~r~rIKlFyRP~~l 135 (221)
T 2co7_B 85 MPTDRE--TLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAV 135 (221)
T ss_dssp CCSSSC--EEEEEEEEEECCC-----------CEEEEEEEEEEEEEEEECTTS
T ss_pred CCCCce--EEEEEEeecCCCCcccccccccCcceeEEEEeeeeeeEEEecccc
Confidence 232222 34555555555432110000000 00123456778887776543
No 16
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=82.69 E-value=21 Score=30.22 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=66.0
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCC-CeEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEE-ecccCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSK-SHVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVF-KFVELPEN 147 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~-~~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vt-l~v~qp~~ 147 (254)
|.+++. .+.|+.... ..+|+|+|.++ .++.--+-.. ...-|.|.|+.-.|+||+...|.|. + .. .
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~-~~---~ 73 (206)
T 1l4i_A 2 VALGAT-RVIYPEGQK---QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA-TN---G 73 (206)
T ss_dssp EEESCS-EEEEETTCS---EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC-CT---T
T ss_pred eEeCce-EEEEeCCCc---EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec-CC---C
Confidence 456675 777775433 67999999986 6655544221 1134999999999999999999998 6 11 1
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 200 (254)
Q Consensus 148 ~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~ 200 (254)
..|.|... -|-+....+++..+... ....-+.....+|++-|-+..-
T Consensus 74 -~lP~DrEs--lf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~l 120 (206)
T 1l4i_A 74 -QMPEDRES--LFWVNVKAIPAMDKAKT---GENYLQFAIVSRIKLLYRPQGL 120 (206)
T ss_dssp -CSCSSSCE--EEEEEEEEEECCC-----------CCCEEEEEEEEEEECTTC
T ss_pred -CCCCCceE--EEEEEeecCCCCccccc---CCceEEEEhhheeeEEEecccc
Confidence 12333333 34444444443221100 0112234567889998876643
No 17
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=80.39 E-value=9.3 Score=33.44 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=44.6
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc-----cCCCceeecCCceeeCCCCEEEEEEEe
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT-----TAPKSCFMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT-----TaPk~Y~VRP~~GiL~PgeS~~I~Vtl 140 (254)
|.|++. .+.|+.... ..+|+|+|.++.++.--+-. ....-|.|.|+.-.|+||+...|.|.+
T Consensus 24 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 90 (239)
T 4djm_A 24 LHLGAT-RVVYNPASS---GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR 90 (239)
T ss_dssp CEESCS-EEEECTTSS---CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred EEEcce-EEEEeCCCC---EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 556665 666664432 47999999988765433221 112349999999999999999999987
No 18
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=75.85 E-value=4.8 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=34.6
Q ss_pred eecCCCCeEEEEEEEEcCCCCeE-EEEEcccCCCceeecCCc-----eeeCCCCEEEEEEEec
Q 025361 85 FPYEAGKQVRSAIKIKNTSKSHV-AFKFQTTAPKSCFMRPPG-----AILAPGESLIATVFKF 141 (254)
Q Consensus 85 F~~e~~k~~~s~LtL~N~S~~~V-AFKVKTTaPk~Y~VRP~~-----GiL~PgeS~~I~Vtl~ 141 (254)
|... +.++.-.|+++|.+..++ -|.|+-+ ...|-+-|.. .-|+||+++++.|-+.
T Consensus 50 f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 50 FTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp EEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred EEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 4433 457888999999998542 2333333 2233333321 3499999999999873
No 19
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=75.19 E-value=40 Score=29.16 Aligned_cols=106 Identities=10% Similarity=0.155 Sum_probs=62.1
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEE--EcccC----CCceeecCCceeeCCCCEEEEEEEecccCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFK--FQTTA----PKSCFMRPPGAILAPGESLIATVFKFVELPEN 147 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFK--VKTTa----Pk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~ 147 (254)
|.++.. .+.|+.... ..+|+|+|.++. ++.-- |.... ..-|.|.|+.-.|+||+...|.|.+. ..
T Consensus 2 ~~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~---~~- 73 (224)
T 3gfu_C 2 LAVDQT-RYIFRGDKD---ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMA---SD- 73 (224)
T ss_dssp EECSCS-EEEEETTSS---CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEEC---SC-
T ss_pred ccccce-EEEEeCCCc---eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEEC---CC-
Confidence 455564 666765432 579999999875 43322 22211 12499999999999999999999872 11
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCC
Q 025361 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNP 198 (254)
Q Consensus 148 ~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p 198 (254)
..|.|.. --|-+....+++..+ ...-+.....+|++-|-+.
T Consensus 74 -~LP~DRE--Slf~lnv~eIPp~~~-------~n~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 74 -HLPKDKE--SVYWLNLQDIPPALE-------GSGIAVALRTKLKLFYRPK 114 (224)
T ss_dssp -CCCSSSC--EEEEEEEEEECCCCS-------SSBCCEEEEEEEEEEEECG
T ss_pred -CCCCCce--EEEEEEeecCCCCCC-------CCeEEEEEEEEeeEEEccc
Confidence 1122322 334444455544321 1112345677778877754
No 20
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=74.87 E-value=40 Score=28.92 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcc---c----CCCceeecCCceeeCCCCEEEEEEEecccCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQT---T----APKSCFMRPPGAILAPGESLIATVFKFVELPEN 147 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKT---T----aPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~ 147 (254)
|.|+-. .+.|+.... ..+|+|+|.++.++.--... . ...-|.|.|+.-.|+||+...|.|.+. ..
T Consensus 14 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~---~~- 85 (218)
T 4ay0_A 14 VTIGES-RIIYPLDAA---GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQA---GG- 85 (218)
T ss_dssp EEESCC-EEEEETTCS---CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEEC---SC-
T ss_pred EEECce-EEEECCCCc---EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEec---CC-
Confidence 455554 666654322 57899999988875544322 1 112399999999999999999999872 11
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCC
Q 025361 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPE 199 (254)
Q Consensus 148 ~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~ 199 (254)
.-|.|. ---|-+....+++..+... ..-+.....+|++-|-+..
T Consensus 86 -~LP~DR--ESlf~lnv~eIPp~~~~~~-----n~lqia~r~rIKlFyRP~~ 129 (218)
T 4ay0_A 86 -VFPRDK--ESLKWLCVKGIPPKDEDIW-----VDVQFAINNCIKLLVRPNE 129 (218)
T ss_dssp -CCCSSS--CEEEEEEEEEECC-------------------CEEEEEEECTT
T ss_pred -CCCcCc--EEEEEEEEEecCCCCcccc-----ceeEEEEEEEEEEEEcCcc
Confidence 112222 1236666666664322100 1123345678888887654
No 21
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=73.68 E-value=18 Score=34.18 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCCCcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCcee----------------------ecCCcee
Q 025361 70 PKRRRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF----------------------MRPPGAI 127 (254)
Q Consensus 70 ~~~~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~----------------------VRP~~Gi 127 (254)
+....+.++-. .-.|.. +++..+-+|+++|.++++|-..==+|+.-+|. |.|+ .=
T Consensus 245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~-~p 321 (382)
T 1yew_A 245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDN-SP 321 (382)
T ss_dssp CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCC-SC
T ss_pred CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCC-CC
Confidence 34566777775 666654 58899999999999999998875566665552 2232 23
Q ss_pred eCCCCEEEEEEEe
Q 025361 128 LAPGESLIATVFK 140 (254)
Q Consensus 128 L~PgeS~~I~Vtl 140 (254)
|+||++.+|.|..
T Consensus 322 I~PGETr~~~v~a 334 (382)
T 1yew_A 322 LAPGETRTVDVTA 334 (382)
T ss_dssp BCTTCEEEEEEEE
T ss_pred cCCCceeEEEEEe
Confidence 8999999999987
No 22
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=71.24 E-value=46 Score=28.09 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=66.7
Q ss_pred EEecCCCceEeecCCCCeEEEEEEEEcCCCC-eEEEEEccc-----CCCceeecCCceeeCCCCEEEEEEEe-cccCCCC
Q 025361 75 LKLDPANKLYFPYEAGKQVRSAIKIKNTSKS-HVAFKFQTT-----APKSCFMRPPGAILAPGESLIATVFK-FVELPEN 147 (254)
Q Consensus 75 L~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~-~VAFKVKTT-----aPk~Y~VRP~~GiL~PgeS~~I~Vtl-~v~qp~~ 147 (254)
|.+++. .+.|+.... ..+|+|.|.++. ++.--+-.. ...-|.|.|+.-.|+||+...|.|.+ . . .
T Consensus 2 v~l~~T-RvIy~~~~k---~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~--~--~ 73 (205)
T 1klf_A 2 VALGAT-RVIYPAGQK---QVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDAT--N--N 73 (205)
T ss_dssp EEESCS-EEEEETTCS---EEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECS--C--S
T ss_pred eEecce-EEEEeCCCc---EEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecC--C--C
Confidence 456775 777775433 679999999887 655544221 12349999999999999999999986 2 1 1
Q ss_pred CCCCCCCCCCCeEEEEEEEeCCCCCchhhhhhccCCCcceeEEEEEEEeCCCC
Q 025361 148 NEKPMYQKSRDKFKIISMKVKADVDYVPELFDEQKDQTAAEQILRVVFLNPER 200 (254)
Q Consensus 148 ~e~p~~~~~kDKFLIqSv~v~~~~d~~~elFk~~~~~~i~e~KLrV~fv~p~~ 200 (254)
..|.|.. .-|-+....+++..+... ....-+.....+|++-|-+..-
T Consensus 74 -~lP~DrE--slf~lnv~eIPp~~~~~~---~~n~lqia~r~riKlFyRP~~l 120 (205)
T 1klf_A 74 -QLPQDRE--SLFWMNVKAIPSMDKSKL---TENTLQLAIISRIKLYYRPAKL 120 (205)
T ss_dssp -CSCSSSC--EEEEEEEEEECCCCTTST---TSCEEEEEEEEEEEEEEECTTC
T ss_pred -CCCCCce--EEEEEEeEecCCCCcccc---CCceEEEEeeeeeeEEEccccc
Confidence 1122222 345555555554321100 0001123456788888876543
No 23
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=65.69 E-value=16 Score=34.81 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=48.0
Q ss_pred CcEEecCCCceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCcee--------------------e-cCCceeeCCC
Q 025361 73 RRLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCF--------------------M-RPPGAILAPG 131 (254)
Q Consensus 73 ~lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~--------------------V-RP~~GiL~Pg 131 (254)
..+.++-. .-.|.- +++..+-+|+++|.++++|-+.==+|+.-+|. + .|+ -|+||
T Consensus 282 ~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PG 357 (419)
T 3rfr_A 282 EQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPG 357 (419)
T ss_dssp CCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTT
T ss_pred CceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCC
Confidence 34666665 566654 58899999999999999998875555555543 1 233 59999
Q ss_pred CEEEEEEEec
Q 025361 132 ESLIATVFKF 141 (254)
Q Consensus 132 eS~~I~Vtl~ 141 (254)
|+.+|+|..+
T Consensus 358 ETrt~~V~a~ 367 (419)
T 3rfr_A 358 ESKEIVVKIQ 367 (419)
T ss_dssp CEEEEEEEEE
T ss_pred cceEEEEEee
Confidence 9999999973
No 24
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.46 E-value=10 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=23.3
Q ss_pred EEEEEcCCCCeEE---EEEcccCCC---ceeecCCceeeCCCCEEEEE
Q 025361 96 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 137 (254)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk---~Y~VRP~~GiL~PgeS~~I~ 137 (254)
.|+|.|.++..+. |+++=...+ .-+.=|+.=+|.||+++.|.
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIw 82 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVW 82 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEE
Confidence 5677777765443 444432221 22234566678899986544
No 25
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=63.85 E-value=15 Score=29.92 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=23.9
Q ss_pred EEEEEcCCCCeEE---EEEcccCCC--ceeecCCceeeCCCCEEEEE
Q 025361 96 AIKIKNTSKSHVA---FKFQTTAPK--SCFMRPPGAILAPGESLIAT 137 (254)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk--~Y~VRP~~GiL~PgeS~~I~ 137 (254)
.|+|.|+++..+. |+++=...+ ..+.=|+.=+|+||++++|.
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtVw 85 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIW 85 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEEE
Confidence 6778887776553 344322111 12333555588999997654
No 26
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=62.77 E-value=23 Score=28.40 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=30.7
Q ss_pred CeEEEEEEEEcCCCC-eEEEEEcccCCCceeec--CCce-eeCCCC
Q 025361 91 KQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMR--PPGA-ILAPGE 132 (254)
Q Consensus 91 k~~~s~LtL~N~S~~-~VAFKVKTTaPk~Y~VR--P~~G-iL~Pge 132 (254)
+...-.++..|.+.. -=-|.++.-.|+.|.++ |+.| .|.|+.
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~ 92 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFN 92 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGG
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 346667888998774 55788888888887776 6777 587843
No 27
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=62.46 E-value=29 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=41.3
Q ss_pred ceEeecCCCC-eEEEEEEEEcCCCCeEEEEEcccCCCceee-cCCceeeCCCCEEEEEEEe
Q 025361 82 KLYFPYEAGK-QVRSAIKIKNTSKSHVAFKFQTTAPKSCFM-RPPGAILAPGESLIATVFK 140 (254)
Q Consensus 82 eL~F~~e~~k-~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~V-RP~~GiL~PgeS~~I~Vtl 140 (254)
.|+-....|. .-...|+|.|.+.....|.+.-....-+.+ .|..=.|+||+...+.|++
T Consensus 21 ~Ly~~~~dG~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 21 QLFRVNSAGEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp CCCCC--CCSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEE
T ss_pred ceEEEcCCCeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEE
Confidence 4444334443 556899999999998888888765433554 3554578899988888877
No 28
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=48.80 E-value=5.4 Score=37.90 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.8
Q ss_pred CCcEEecCCCceEeecCCCC
Q 025361 72 RRRLKLDPANKLYFPYEAGK 91 (254)
Q Consensus 72 ~~lL~IdP~~eL~F~~e~~k 91 (254)
.+.+.|.|..+++|..+++.
T Consensus 38 ~~~~~l~~~~e~R~ev~~~~ 57 (460)
T 2npi_A 38 WHKLVIPKGSDWQIDLKAEG 57 (460)
T ss_dssp CEEEECCTTEECCEECCTTC
T ss_pred cEEEEeCCCcEEEEEECCCC
Confidence 47899999999999887763
No 29
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.40 E-value=17 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=20.2
Q ss_pred cccCCCcccccccCccccCCcccchhccccCCCCCcEEecCCC
Q 025361 39 SHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLDPAN 81 (254)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~sl~~~~~lL~IdP~~ 81 (254)
++|||+.+..-+..++......|.-.-+.+....-.|.++|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~d 49 (100)
T 1uh6_A 7 HHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDD 49 (100)
T ss_dssp CCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccccccccccCCCCCCeEEEEEECCCCCEEEEEeCCCC
Confidence 3344444443333333333333444455555544456666654
No 30
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=41.59 E-value=55 Score=25.80 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=39.1
Q ss_pred CCCCeEEEEEEEEcCCCC-eEEEEEcccCCCceeecCCceeeCCCCEEEEEEEe
Q 025361 88 EAGKQVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 88 e~~k~~~s~LtL~N~S~~-~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl 140 (254)
..|+.+...++++|.+.. -=+|+|+-...+...-.-..+ |+||++..|.+..
T Consensus 30 ~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 30 GVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp CTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred cCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 458889999999999974 467888765555544333334 9999999999997
No 31
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=35.68 E-value=61 Score=28.74 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCeEEEEEEEEcCCCCeEE-EEEcccCCC----ce--eecCCceeeCCCCEEEEEEEe
Q 025361 90 GKQVRSAIKIKNTSKSHVA-FKFQTTAPK----SC--FMRPPGAILAPGESLIATVFK 140 (254)
Q Consensus 90 ~k~~~s~LtL~N~S~~~VA-FKVKTTaPk----~Y--~VRP~~GiL~PgeS~~I~Vtl 140 (254)
+...+-.|.+.|.+..++. |++.-..++ .+ .+.|.-..|+|++.+...|..
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v 124 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNI 124 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEE
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEE
Confidence 3467889999999986654 666444443 34 345666899999986555543
No 32
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=27.54 E-value=2.1e+02 Score=22.00 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=43.1
Q ss_pred eEEEEEEEEcCCCC-eEEEEEcccCCCceeec--CCce-eeCC--CCEEEEEEEecccCCCCCCCCCCCCCCCeEEEEEE
Q 025361 92 QVRSAIKIKNTSKS-HVAFKFQTTAPKSCFMR--PPGA-ILAP--GESLIATVFKFVELPENNEKPMYQKSRDKFKIISM 165 (254)
Q Consensus 92 ~~~s~LtL~N~S~~-~VAFKVKTTaPk~Y~VR--P~~G-iL~P--geS~~I~Vtl~v~qp~~~e~p~~~~~kDKFLIqSv 165 (254)
...-.++..|.+.. -=-|.++.-.|+.|.++ |+.| .|.| +..++=.+.+ ..+.. ..-+=|+.|.|.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~~------~~lklR~klsY~ 101 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQK------QQLRMRIKLTFN 101 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTTC------CCCCEEEEEEEE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCCC------CCEEEEEEEEEE
Confidence 46677888898874 45688998889987765 8887 6888 5544333332 13321 234566666665
Q ss_pred Ee
Q 025361 166 KV 167 (254)
Q Consensus 166 ~v 167 (254)
.-
T Consensus 102 ~~ 103 (122)
T 3zy7_A 102 WN 103 (122)
T ss_dssp ET
T ss_pred EC
Confidence 43
No 33
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=26.35 E-value=80 Score=28.78 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCCCCCCeEEEEEEEeCCC
Q 025361 95 SAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170 (254)
Q Consensus 95 s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~~~kDKFLIqSv~v~~~ 170 (254)
-.+.|+|.++- -|.++-+.+..|.+.++.=.|+|+++..+.|... ... ....-+|-|.-..+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK----QGI-----KGGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC----TTC-----CCCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc----ccc-----cceEEEEEeeeeeecCC
Confidence 57888888775 5777778899999999999999999999999871 111 23446777766665443
No 34
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=25.02 E-value=1.1e+02 Score=25.65 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred ceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEE
Q 025361 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATV 138 (254)
Q Consensus 82 eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~V 138 (254)
.|.|....+ .|++.|+|..+|.|-=-+-..+.+ . .++|+|+++..+.+
T Consensus 130 ~L~~~~~~~-----~l~v~Nptpy~vtl~~l~~~g~~~---~-~~mv~P~s~~~~~l 177 (205)
T 1klf_A 130 KLRFRRSAN-----SLTLINPTPYYLTVTELNAGTRVL---E-NALVPPMGESTVKL 177 (205)
T ss_dssp GCEECCCSS-----EEEEEECSSSCEEEEEEESSSSBC---C-CEEECTTEEEEEEC
T ss_pred eeEEEEcCC-----EEEEECCCCCEEEEEEEEeCCccc---c-cceEcCCCcceeec
Confidence 677765332 599999999999885322222332 2 37999999987653
No 35
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=24.89 E-value=84 Score=24.53 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=36.7
Q ss_pred cEEecCCCceEeecCCCCeEEEEEEEEcCCCCe-----EEEEEcccC-------------C-Cceee--cC----Cceee
Q 025361 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSH-----VAFKFQTTA-------------P-KSCFM--RP----PGAIL 128 (254)
Q Consensus 74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~-----VAFKVKTTa-------------P-k~Y~V--RP----~~GiL 128 (254)
.+.++|. +|..+.. |+ +-.|+|+|....+ --|-+-+.+ + ..|.- .+ ..++|
T Consensus 11 ~m~F~p~-~i~V~k~-G~--~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 11 SMQFNTK-SIVVDKT-CK--EFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TSCBSCS-EEEECTT-CS--EEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CceEecC-EEEEecC-Cc--EEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 4677776 7766433 33 4578899987543 334443321 1 11211 11 24578
Q ss_pred CCCCEEEEEEEe
Q 025361 129 APGESLIATVFK 140 (254)
Q Consensus 129 ~PgeS~~I~Vtl 140 (254)
.||++..|++..
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999999984
No 36
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=24.58 E-value=1.2e+02 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=21.6
Q ss_pred EEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEE
Q 025361 97 IKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESL 134 (254)
Q Consensus 97 LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~ 134 (254)
+-+.+..+..|..-=+...|+.|. -+.|.+++|++.
T Consensus 46 vi~~~~~~~~vLLv~r~~~~g~W~--lPgG~ve~gEt~ 81 (194)
T 2fvv_A 46 LCFRSESEEEVLLVSSSRHPDRWI--VPGGGMEPEEEP 81 (194)
T ss_dssp EEESSTTCCEEEEEECSSCTTSEE--CSEEECCTTCCH
T ss_pred EEEEECCCCEEEEEEEeCCCCcEE--CCCCcCCCCcCH
Confidence 333355455665533344456554 468999999873
No 37
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=23.98 E-value=2.1e+02 Score=27.74 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=37.6
Q ss_pred eEEEEEEEEcCCCCeEEEEEcccCCCc--eeecCCceee-CCCCEEEEEEEe
Q 025361 92 QVRSAIKIKNTSKSHVAFKFQTTAPKS--CFMRPPGAIL-APGESLIATVFK 140 (254)
Q Consensus 92 ~~~s~LtL~N~S~~~VAFKVKTTaPk~--Y~VRP~~GiL-~PgeS~~I~Vtl 140 (254)
..+..-+++|.......|++.-+.|.- -.|.|..=.+ +.|++..++|++
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 445566899999999999999888864 4566877655 568888888876
No 38
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=23.58 E-value=84 Score=26.84 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=32.9
Q ss_pred ceEeecCCCCeEEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEE
Q 025361 82 KLYFPYEAGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVF 139 (254)
Q Consensus 82 eL~F~~e~~k~~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vt 139 (254)
.|.|....+ .|+++|+|..+|.|-=-+-..+ .+ ..++|+|+++..+.+-
T Consensus 140 ~L~~~~~g~-----~l~v~NptPyyvtl~~l~~~g~--~i--~~~mv~P~s~~~~~l~ 188 (218)
T 4ay0_A 140 NLSWKVDGG-----KLIAENPSPFYMNIGELTFGGK--SI--PSHYIPPKSTWAFDLP 188 (218)
T ss_dssp GCEEEEETT-----EEEEEECSSSCEEEEEEEETTE--EC--CCCEECTTEEEEEEC-
T ss_pred ceEEEEeCC-----EEEEECCCCCEEEEEEEEECCE--Ec--cCcEECCCCeeEEECC
Confidence 577776544 5999999999999842222222 23 2489999998776543
No 39
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=22.91 E-value=95 Score=24.28 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=26.1
Q ss_pred EEEEEcCCCCeEE---EEEcccCCC---ceeecCCceeeCCCCEEEEE
Q 025361 96 AIKIKNTSKSHVA---FKFQTTAPK---SCFMRPPGAILAPGESLIAT 137 (254)
Q Consensus 96 ~LtL~N~S~~~VA---FKVKTTaPk---~Y~VRP~~GiL~PgeS~~I~ 137 (254)
.++|.|+++..+. |+++-...+ .|.. |+.=+|+||+++.|-
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtVw 72 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTIW 72 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEEE
Confidence 6788888776554 566533222 3544 555588999997654
No 40
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=21.30 E-value=96 Score=24.17 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=36.2
Q ss_pred cEEecCCCceEeecCCCCeEEEEEEEEcCCCCe-----EEEEEcccC-------------C-Cceee--cC----Cceee
Q 025361 74 RLKLDPANKLYFPYEAGKQVRSAIKIKNTSKSH-----VAFKFQTTA-------------P-KSCFM--RP----PGAIL 128 (254)
Q Consensus 74 lL~IdP~~eL~F~~e~~k~~~s~LtL~N~S~~~-----VAFKVKTTa-------------P-k~Y~V--RP----~~GiL 128 (254)
-+.++|. +|..+.. |+ .-.|+|+|...-+ .-|-|-+.+ + ..|.- .+ ...+|
T Consensus 12 ~m~F~p~-~i~V~k~-G~--~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l 87 (129)
T 2ccw_A 12 AMQYNVK-EIVVDKS-CK--QFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVI 87 (129)
T ss_dssp TSCBSCS-EEEECTT-CS--EEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CccEecc-eEEEecC-CC--EEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEE
Confidence 3567775 6666332 33 4578899987643 444443321 0 11110 01 24578
Q ss_pred CCCCEEEEEEEe
Q 025361 129 APGESLIATVFK 140 (254)
Q Consensus 129 ~PgeS~~I~Vtl 140 (254)
.||++..|++..
T Consensus 88 ~pGet~svtf~~ 99 (129)
T 2ccw_A 88 GGGESDSVTFDV 99 (129)
T ss_dssp CTTCEEEEEEEG
T ss_pred CCCCEEEEEEec
Confidence 999999999885
No 41
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=21.11 E-value=1e+02 Score=25.31 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=52.0
Q ss_pred EEEEEEEEcCCCCeEEEEEcccCCCceeecCCceeeCCCCEEEEEEEecccCCCCCCCCCCCCCCCeEEEEEEEeCCC
Q 025361 93 VRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVELPENNEKPMYQKSRDKFKIISMKVKAD 170 (254)
Q Consensus 93 ~~s~LtL~N~S~~~VAFKVKTTaPk~Y~VRP~~GiL~PgeS~~I~Vtl~v~qp~~~e~p~~~~~kDKFLIqSv~v~~~ 170 (254)
....+-|.|.|+..+.|-.-+-..+.+.++ ..|.|+|+..+-|.=.- .. +...-.+|.||-+.-..+
T Consensus 28 t~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~---~~-------eln~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 28 TPFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFT---KD-------VLNEMERVAVQLIAFKDG 94 (147)
T ss_dssp CCEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEEC---GG-------GGGGCSSEEEEEEEECSS
T ss_pred cceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeC---hh-------HhcCCceEEEEEEEEcCC
Confidence 356788999999999999988777777766 68999999998887653 11 233457899999988764
No 42
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=21.04 E-value=23 Score=28.23 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=18.2
Q ss_pred cccCCCcccccccCccccCCcccchhccccCCCCCcEEec
Q 025361 39 SHQHQNQSNQQVEGSKTHGSSSVSSVARSLLPKRRRLKLD 78 (254)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~sl~~~~~lL~Id 78 (254)
+||||+.++...+....-...|..-.|+-|...+-+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~k~~gsyKYSA~kL~eKGVLvei~ 42 (121)
T 3isu_A 3 HHHHHSSGRENLYFQGGKKQPSLHYTAAQLLEKGVLVEIE 42 (121)
T ss_dssp ------------CCC----CCCEEEEHHHHHHHTSEEEET
T ss_pred cccccccccccccccccccCCCeeECHHHHhhCCEEEEec
Confidence 3455555554444333334567888888888888888886
No 43
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=20.72 E-value=29 Score=26.33 Aligned_cols=16 Identities=56% Similarity=0.817 Sum_probs=11.8
Q ss_pred CCCceee-eeeeeeehh
Q 025361 229 TGPRIIG-EGLVIDEWV 244 (254)
Q Consensus 229 ~~~~~~~-~~~~~~~~~ 244 (254)
..|..|| +|+||||=+
T Consensus 28 ~~pslVGi~GiVV~ET~ 44 (96)
T 1v76_A 28 THPAFVGIEGYVIDETR 44 (96)
T ss_dssp SSGGGTTCEEEEEEECS
T ss_pred CCCCccCcEEEEEEecc
Confidence 4567776 999999843
No 44
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=20.21 E-value=96 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEEcCCCCeEEEEEcccCC
Q 025361 96 AIKIKNTSKSHVAFKFQTTAP 116 (254)
Q Consensus 96 ~LtL~N~S~~~VAFKVKTTaP 116 (254)
.|+++..+...|.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888778899999998877
Done!