BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025362
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 49 QMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81
++F D+DP+VV +L E D K+E+A+D L LS
Sbjct: 56 EIFSDLDPDVVYLMLSECDFKVENAMDCLLELS 88
>sp|A9IH53|HSLU_BORPD ATP-dependent protease ATPase subunit HslU OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hslU
PE=3 SV=1
Length = 444
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 47 LLQMFPDVDPEVVK---SVLGEHDNKIE---DAIDRLRVLSFSNISERIKSQGLEPTIIG 100
+++ D D ++K ++LG D +++ D I+RL L+FS ++ER ++ G
Sbjct: 341 FVRILSDTDASLIKQYSALLGTEDVQLDFKPDGIERLAELAFS-VNERTENIGARRLYTV 399
Query: 101 SQMSEEEVRSAHTNFCGENITDGSKWVDLFVHEMMSAADL 140
+ EE+ T G+ IT + +VD + E S+ DL
Sbjct: 400 MEKLLEELSFDATASSGKTITIDAAYVDAQLSEAASSQDL 439
>sp|Q6BRB3|DEF1_DEBHA RNA polymerase II degradation factor 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEF1 PE=3 SV=2
Length = 742
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 47 LLQMFPDVDPEVVKSVLGEHDNKIEDAID 75
LL+MFPD + + + S+L EH+N +E ID
Sbjct: 35 LLEMFPDWESDDLSSLLAEHNNILEVVID 63
>sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1A OS=Danio
rerio GN=smarcad1a PE=2 SV=1
Length = 972
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNIS 86
PD++ EV++ +L EHD E+A+ L V S ++ S
Sbjct: 188 PDIEKEVLRDILKEHDWDYENALGSLLVFSSTDTS 222
>sp|Q6DFR0|TOLIP_XENTR Toll-interacting protein OS=Xenopus tropicalis GN=tollip PE=2 SV=1
Length = 269
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77
+ F+ MFP +DPEV++SVL + A++ L
Sbjct: 229 IKFIKDMFPTMDPEVIRSVLEAQGGNRDAAVNSL 262
>sp|Q6D7R1|PUR7_ERWCT Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=purC PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 128 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 183
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 184 NQILKKAVSI 193
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
>sp|C6DBS2|PUR7_PECCP Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Pectobacterium carotovorum subsp. carotovorum (strain
PC1) GN=purC PE=3 SV=1
Length = 237
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 128 DLFVHEMMSAADLDDARGRAARILEVFERSIITNSKAS----KELEHASLKEHLQSLLND 183
DL V E + D + G ARI E F+R + N+K + +LE A + + SLL+D
Sbjct: 22 DLLVLEFRN----DTSAGDGARI-EQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSD 76
Query: 184 NQILKKAVSI 193
N++L K + +
Sbjct: 77 NEVLVKKLEM 86
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1B OS=Danio
rerio GN=smarcad1b PE=3 SV=1
Length = 954
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 13 EEICGSSSPT-SAKRSRCSTFGSLVRSG--SDDPVSFLLQM---FPDVDPEVVKSVLGEH 66
+++CGSS + S K R S G S D L ++ FP ++ ++ VL EH
Sbjct: 144 QQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEH 203
Query: 67 DNKIEDAIDRLRVLS 81
D I+DA++ LR+ S
Sbjct: 204 DWLIDDALETLRMFS 218
>sp|Q8D233|RPOB_WIGBR DNA-directed RNA polymerase subunit beta OS=Wigglesworthia
glossinidia brevipalpis GN=rpoB PE=3 SV=1
Length = 1342
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 151 LEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKE--V 208
+E+F R + K + E+E+ +KE + + + +I K ++ IQ E L++ E +
Sbjct: 930 VEIFTRDGVKKDKRALEIEYMQIKEAKKDIYEELEIFKSSLKIQIEYFLKENNIEYDSLS 989
Query: 209 ELLKLVISQYQDQARNL-----ELRNYALKL 234
ELLK I + NL EL N L+L
Sbjct: 990 ELLKGNIKNLIFKNNNLNNIFEELINKFLRL 1020
>sp|Q7WQZ4|HSLU_BORBR ATP-dependent protease ATPase subunit HslU OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=hslU PE=3 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 47 LLQMFPDVDPEVVK---SVLGEHDNKIE---DAIDRLRVLSFSNISERIKSQGLEPTIIG 100
+ + + D ++K ++LG D K+E D I RL L+FS ++ER ++ G
Sbjct: 341 FVNILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFS-VNERTENIGARRLYTV 399
Query: 101 SQMSEEEVRSAHTNFCGENITDGSKWVDLFVHEMMSAADL 140
+ EE+ + GE IT + +VDL + E + DL
Sbjct: 400 MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDL 439
>sp|Q7VUJ9|HSLU_BORPE ATP-dependent protease ATPase subunit HslU OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=hslU
PE=3 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 47 LLQMFPDVDPEVVK---SVLGEHDNKIE---DAIDRLRVLSFSNISERIKSQGLEPTIIG 100
+ + + D ++K ++LG D K+E D I RL L+FS ++ER ++ G
Sbjct: 341 FVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFS-VNERTENIGARRLYTV 399
Query: 101 SQMSEEEVRSAHTNFCGENITDGSKWVDLFVHEMMSAADL 140
+ EE+ + GE IT + +VDL + E + DL
Sbjct: 400 MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDL 439
>sp|Q7W216|HSLU_BORPA ATP-dependent protease ATPase subunit HslU OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=hslU PE=3 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 47 LLQMFPDVDPEVVK---SVLGEHDNKIE---DAIDRLRVLSFSNISERIKSQGLEPTIIG 100
+ + + D ++K ++LG D K+E D I RL L+FS ++ER ++ G
Sbjct: 341 FVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFS-VNERTENIGARRLYTV 399
Query: 101 SQMSEEEVRSAHTNFCGENITDGSKWVDLFVHEMMSAADL 140
+ EE+ + GE IT + +VDL + E + DL
Sbjct: 400 MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDL 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,604,861
Number of Sequences: 539616
Number of extensions: 3370251
Number of successful extensions: 16253
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 16061
Number of HSP's gapped (non-prelim): 471
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)