Query 025362
Match_columns 254
No_of_seqs 66 out of 68
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14817 HAUS5: HAUS augmin-li 99.0 8.4E-09 1.8E-13 104.4 13.6 121 121-241 307-431 (632)
2 PF02845 CUE: CUE domain; Int 98.3 1.2E-06 2.6E-11 59.2 4.3 38 43-80 4-41 (42)
3 smart00546 CUE Domain that may 98.2 1.5E-06 3.3E-11 58.8 4.3 38 42-79 4-41 (43)
4 PF03474 DMA: DMRTA motif; In 97.4 0.00022 4.8E-09 49.0 4.1 35 43-77 4-38 (39)
5 COG3074 Uncharacterized protei 96.1 0.082 1.8E-06 41.1 9.7 67 149-225 4-72 (79)
6 PRK15422 septal ring assembly 96.1 0.091 2E-06 41.2 9.7 67 149-225 4-72 (79)
7 PF00627 UBA: UBA/TS-N domain; 95.6 0.021 4.5E-07 37.5 3.9 34 42-77 4-37 (37)
8 PF06005 DUF904: Protein of un 95.0 0.34 7.3E-06 37.0 9.3 60 149-225 4-65 (72)
9 PF10205 KLRAQ: Predicted coil 94.5 0.34 7.3E-06 39.6 8.8 54 177-240 7-60 (102)
10 PF15619 Lebercilin: Ciliary p 94.5 0.75 1.6E-05 40.9 11.7 72 166-237 17-99 (194)
11 PF09744 Jnk-SapK_ap_N: JNK_SA 93.9 1.3 2.8E-05 38.4 11.8 77 148-227 32-110 (158)
12 smart00165 UBA Ubiquitin assoc 92.7 0.24 5.1E-06 31.9 4.1 33 43-77 4-36 (37)
13 cd00194 UBA Ubiquitin Associat 92.5 0.18 3.9E-06 32.6 3.3 34 43-78 4-37 (38)
14 PRK10884 SH3 domain-containing 92.2 2.5 5.5E-05 37.9 11.3 69 166-236 98-169 (206)
15 PF02403 Seryl_tRNA_N: Seryl-t 91.0 4.1 8.9E-05 31.9 10.2 83 151-233 11-101 (108)
16 PHA02047 phage lambda Rz1-like 91.0 1.6 3.4E-05 35.8 7.8 52 188-242 26-77 (101)
17 PF15058 Speriolin_N: Sperioli 89.9 0.3 6.5E-06 44.1 3.1 22 168-190 19-40 (200)
18 PRK09413 IS2 repressor TnpA; R 89.4 0.61 1.3E-05 37.7 4.3 32 166-197 76-107 (121)
19 PF05010 TACC: Transforming ac 88.9 13 0.00028 33.7 12.8 90 148-237 43-142 (207)
20 PF13747 DUF4164: Domain of un 87.0 13 0.00029 29.2 11.6 83 137-224 3-85 (89)
21 PF04111 APG6: Autophagy prote 87.0 14 0.00031 34.9 12.4 28 202-229 109-136 (314)
22 KOG1853 LIS1-interacting prote 86.8 9.2 0.0002 36.5 10.9 66 169-234 53-126 (333)
23 TIGR03495 phage_LysB phage lys 84.8 12 0.00027 31.8 9.8 68 166-234 28-96 (135)
24 TIGR03752 conj_TIGR03752 integ 84.1 11 0.00023 38.3 10.6 59 166-226 78-136 (472)
25 PF13851 GAS: Growth-arrest sp 83.7 16 0.00034 32.6 10.5 68 166-240 53-120 (201)
26 PF11559 ADIP: Afadin- and alp 83.2 25 0.00054 29.1 12.9 98 140-237 43-150 (151)
27 PF10473 CENP-F_leu_zip: Leuci 82.5 15 0.00032 31.5 9.4 65 166-240 50-114 (140)
28 PLN02678 seryl-tRNA synthetase 81.7 18 0.00039 36.2 11.1 79 166-253 38-116 (448)
29 PRK03918 chromosome segregatio 81.3 73 0.0016 33.1 15.7 31 130-160 150-180 (880)
30 PF10226 DUF2216: Uncharacteri 81.0 9.6 0.00021 34.5 8.1 63 169-232 56-127 (195)
31 PF15058 Speriolin_N: Sperioli 80.1 4.4 9.5E-05 36.8 5.7 37 170-217 7-43 (200)
32 PF07058 Myosin_HC-like: Myosi 79.7 18 0.00039 35.3 9.9 70 166-240 5-86 (351)
33 KOG0971 Microtubule-associated 79.7 57 0.0012 36.2 14.5 70 166-235 330-439 (1243)
34 KOG4588 Predicted ubiquitin-co 79.7 1.8 3.9E-05 40.4 3.2 32 50-81 1-32 (267)
35 PF06156 DUF972: Protein of un 79.6 10 0.00022 30.9 7.2 23 166-188 20-42 (107)
36 PF08614 ATG16: Autophagy prot 79.6 21 0.00046 31.0 9.7 76 148-233 101-178 (194)
37 PF10828 DUF2570: Protein of u 79.5 21 0.00045 28.7 8.9 61 166-229 30-90 (110)
38 TIGR03752 conj_TIGR03752 integ 79.1 16 0.00034 37.1 9.8 24 200-223 117-140 (472)
39 KOG0989 Replication factor C, 79.0 28 0.00061 34.0 11.1 55 26-84 177-238 (346)
40 PF14555 UBA_4: UBA-like domai 78.7 3.1 6.7E-05 28.1 3.3 36 43-79 3-38 (43)
41 COG4797 Predicted regulatory d 76.7 1.8 3.8E-05 40.7 2.2 25 47-71 4-29 (268)
42 KOG0241 Kinesin-like protein [ 76.4 14 0.00031 41.0 9.0 53 200-252 390-443 (1714)
43 PF11577 NEMO: NF-kappa-B esse 76.2 27 0.00058 26.6 8.1 57 173-229 4-68 (68)
44 PRK13182 racA polar chromosome 76.2 39 0.00084 29.7 10.3 94 123-219 42-145 (175)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.8 43 0.00094 27.5 11.5 68 169-236 60-128 (132)
46 PRK13169 DNA replication intia 75.7 15 0.00032 30.4 7.1 24 166-189 20-43 (110)
47 KOG4005 Transcription factor X 75.6 21 0.00046 33.8 8.9 50 166-215 95-148 (292)
48 PRK05431 seryl-tRNA synthetase 75.1 40 0.00088 33.1 11.2 69 166-234 33-101 (425)
49 KOG0995 Centromere-associated 74.9 37 0.00081 35.3 11.2 64 166-229 299-362 (581)
50 PF07888 CALCOCO1: Calcium bin 72.5 38 0.00082 35.0 10.6 66 172-237 196-265 (546)
51 TIGR00414 serS seryl-tRNA synt 72.2 37 0.0008 33.3 10.2 78 166-253 35-114 (418)
52 PF11488 Lge1: Transcriptional 71.8 18 0.0004 27.7 6.4 48 194-241 25-72 (80)
53 PF11932 DUF3450: Protein of u 71.2 79 0.0017 28.4 11.7 45 166-210 54-98 (251)
54 PRK13922 rod shape-determining 71.0 64 0.0014 29.2 10.8 37 180-216 74-110 (276)
55 TIGR02894 DNA_bind_RsfA transc 68.5 34 0.00073 30.3 8.1 37 149-187 87-123 (161)
56 CHL00098 tsf elongation factor 68.3 6.6 0.00014 35.3 3.8 38 44-82 5-42 (200)
57 PF02954 HTH_8: Bacterial regu 68.3 4 8.7E-05 27.3 1.9 25 54-78 5-29 (42)
58 PRK13729 conjugal transfer pil 68.0 32 0.0007 35.0 8.9 19 166-184 74-92 (475)
59 PRK09039 hypothetical protein; 67.6 81 0.0018 30.2 11.2 60 140-199 111-175 (343)
60 TIGR00219 mreC rod shape-deter 66.6 16 0.00035 34.0 6.1 38 166-216 71-108 (283)
61 PF13097 CENP-U: CENP-A nucleo 66.4 32 0.0007 30.7 7.6 42 149-190 108-157 (175)
62 PRK10884 SH3 domain-containing 66.4 64 0.0014 29.1 9.7 26 202-227 142-167 (206)
63 KOG0804 Cytoplasmic Zn-finger 66.4 81 0.0018 32.3 11.2 83 148-237 370-452 (493)
64 PRK02224 chromosome segregatio 65.5 1.8E+02 0.0039 30.5 15.7 62 166-227 211-272 (880)
65 TIGR02449 conserved hypothetic 65.2 58 0.0013 24.7 8.2 23 166-188 19-41 (65)
66 PRK06369 nac nascent polypepti 64.8 7.7 0.00017 32.4 3.3 27 53-79 88-114 (115)
67 PRK12332 tsf elongation factor 64.7 8.5 0.00018 34.4 3.8 41 43-84 7-47 (198)
68 PF01166 TSC22: TSC-22/dip/bun 64.5 13 0.00028 27.9 4.1 30 206-235 14-43 (59)
69 PF10234 Cluap1: Clusterin-ass 64.4 1.1E+02 0.0024 28.8 11.2 99 121-227 131-250 (267)
70 PRK11637 AmiB activator; Provi 64.2 1.4E+02 0.0031 28.9 16.2 10 134-143 145-154 (428)
71 PLN02320 seryl-tRNA synthetase 64.0 1E+02 0.0023 31.5 11.6 78 166-253 98-175 (502)
72 PF07106 TBPIP: Tat binding pr 62.6 56 0.0012 27.6 8.2 61 166-227 77-137 (169)
73 COG3206 GumC Uncharacterized p 62.3 1.3E+02 0.0028 29.4 11.6 79 150-228 321-402 (458)
74 TIGR01837 PHA_granule_1 poly(h 61.9 25 0.00054 28.8 5.8 20 207-226 97-116 (118)
75 KOG0976 Rho/Rac1-interacting s 61.6 1.2E+02 0.0026 33.5 11.9 32 204-235 377-408 (1265)
76 KOG4603 TBP-1 interacting prot 61.2 76 0.0016 28.8 9.0 25 202-226 119-143 (201)
77 TIGR00264 alpha-NAC-related pr 61.2 9.5 0.00021 31.9 3.2 26 53-78 90-115 (116)
78 PF08317 Spc7: Spc7 kinetochor 60.7 1.5E+02 0.0033 27.9 12.3 58 166-226 207-264 (325)
79 PF10046 BLOC1_2: Biogenesis o 60.7 82 0.0018 24.9 13.2 51 187-237 40-90 (99)
80 PRK15354 type III secretion sy 60.6 1.4E+02 0.0031 27.7 11.1 54 122-176 21-82 (224)
81 PF13118 DUF3972: Protein of u 60.6 53 0.0011 28.0 7.5 31 150-192 72-102 (126)
82 PF15070 GOLGA2L5: Putative go 60.2 1.6E+02 0.0035 30.8 12.4 37 166-202 92-128 (617)
83 KOG4360 Uncharacterized coiled 60.1 1.5E+02 0.0033 30.9 11.9 108 140-252 207-324 (596)
84 PF05300 DUF737: Protein of un 60.0 71 0.0015 28.6 8.7 27 201-230 139-165 (187)
85 TIGR00116 tsf translation elon 59.5 6.8 0.00015 37.1 2.3 40 44-84 8-47 (290)
86 PF12325 TMF_TATA_bd: TATA ele 59.1 1.1E+02 0.0023 25.6 11.4 17 169-185 31-47 (120)
87 PRK09377 tsf elongation factor 57.7 7.6 0.00016 36.7 2.3 38 44-82 9-46 (290)
88 PF09789 DUF2353: Uncharacteri 57.1 34 0.00073 33.1 6.5 29 166-194 84-112 (319)
89 PHA02562 46 endonuclease subun 56.8 1.9E+02 0.0042 28.3 11.9 64 166-229 179-243 (562)
90 KOG4343 bZIP transcription fac 56.7 16 0.00035 38.0 4.5 49 150-198 279-332 (655)
91 PF05911 DUF869: Plant protein 56.6 1.9E+02 0.0042 31.2 12.5 69 166-237 90-158 (769)
92 KOG0612 Rho-associated, coiled 56.4 2.1E+02 0.0045 32.8 12.9 74 166-240 463-542 (1317)
93 KOG0977 Nuclear envelope prote 56.4 34 0.00074 35.4 6.8 48 191-242 31-78 (546)
94 PF06810 Phage_GP20: Phage min 56.4 1.3E+02 0.0028 25.8 10.3 67 166-240 25-95 (155)
95 PF10211 Ax_dynein_light: Axon 56.0 1.4E+02 0.0031 26.2 13.7 67 170-238 122-188 (189)
96 PF07334 IFP_35_N: Interferon- 55.8 20 0.00044 28.0 4.0 28 166-193 5-32 (76)
97 PF07445 priB_priC: Primosomal 55.7 20 0.00044 31.1 4.5 63 177-239 72-135 (173)
98 PF04111 APG6: Autophagy prote 54.4 2E+02 0.0043 27.3 11.9 78 166-243 55-136 (314)
99 PF10506 MCC-bdg_PDZ: PDZ doma 54.3 95 0.0021 23.6 8.7 60 172-232 2-65 (67)
100 PRK13922 rod shape-determining 53.7 98 0.0021 28.0 8.7 22 166-187 74-95 (276)
101 PRK14872 rod shape-determining 53.5 32 0.00069 33.4 5.8 15 166-180 62-76 (337)
102 PF06005 DUF904: Protein of un 53.5 75 0.0016 24.3 6.7 23 166-188 30-52 (72)
103 COG1308 EGD2 Transcription fac 52.5 16 0.00034 31.0 3.1 25 54-78 97-121 (122)
104 PF10267 Tmemb_cc2: Predicted 52.1 96 0.0021 30.8 8.9 37 187-229 49-85 (395)
105 KOG0978 E3 ubiquitin ligase in 51.7 3.4E+02 0.0073 29.2 13.7 79 172-250 52-134 (698)
106 KOG0977 Nuclear envelope prote 51.7 2.6E+02 0.0055 29.2 12.1 39 202-240 151-189 (546)
107 TIGR00219 mreC rod shape-deter 51.3 82 0.0018 29.4 8.0 12 225-236 96-107 (283)
108 PF07888 CALCOCO1: Calcium bin 51.0 3.1E+02 0.0067 28.6 13.4 16 224-239 280-295 (546)
109 PF09744 Jnk-SapK_ap_N: JNK_SA 50.5 1.7E+02 0.0037 25.4 9.9 61 166-226 87-148 (158)
110 smart00787 Spc7 Spc7 kinetocho 50.3 1.2E+02 0.0026 29.0 9.0 57 168-227 204-260 (312)
111 PRK11091 aerobic respiration c 50.3 2.9E+02 0.0062 28.3 12.3 45 140-189 80-124 (779)
112 COG5296 Transcription factor i 50.1 28 0.0006 35.2 4.9 53 171-231 350-402 (521)
113 PF13851 GAS: Growth-arrest sp 49.8 1.9E+02 0.0041 25.7 13.6 60 166-225 67-126 (201)
114 PRK13729 conjugal transfer pil 49.7 84 0.0018 32.1 8.2 30 207-236 91-120 (475)
115 smart00804 TAP_C C-terminal do 49.3 24 0.00053 26.3 3.4 33 50-82 21-53 (63)
116 KOG3119 Basic region leucine z 48.7 56 0.0012 30.3 6.5 26 166-191 227-252 (269)
117 PF06156 DUF972: Protein of un 48.6 77 0.0017 25.9 6.5 40 202-241 18-57 (107)
118 COG4026 Uncharacterized protei 48.6 2E+02 0.0043 27.3 9.9 68 166-237 133-201 (290)
119 PRK11637 AmiB activator; Provi 48.3 2.6E+02 0.0056 27.1 11.2 20 206-225 103-122 (428)
120 COG2433 Uncharacterized conser 47.9 2.9E+02 0.0062 29.4 11.8 43 185-227 460-502 (652)
121 cd07429 Cby_like Chibby, a nuc 47.5 23 0.0005 29.3 3.3 18 166-183 84-101 (108)
122 PF05597 Phasin: Poly(hydroxya 47.5 1.3E+02 0.0028 25.5 7.9 44 140-183 74-124 (132)
123 PF09726 Macoilin: Transmembra 47.5 2.4E+02 0.0052 30.0 11.5 33 203-235 549-581 (697)
124 PF08614 ATG16: Autophagy prot 47.4 55 0.0012 28.4 5.9 61 166-229 86-146 (194)
125 PF14362 DUF4407: Domain of un 47.1 1.5E+02 0.0033 27.1 9.0 22 211-232 187-208 (301)
126 PF09728 Taxilin: Myosin-like 47.0 2.6E+02 0.0056 26.5 10.9 59 166-227 242-300 (309)
127 KOG4286 Dystrophin-like protei 46.9 53 0.0012 35.7 6.6 57 186-242 192-249 (966)
128 PF04849 HAP1_N: HAP1 N-termin 46.7 2.6E+02 0.0056 27.1 10.6 89 137-228 205-305 (306)
129 PF01166 TSC22: TSC-22/dip/bun 45.2 37 0.0008 25.5 3.8 24 166-189 12-42 (59)
130 PF12958 DUF3847: Protein of u 45.1 43 0.00093 26.6 4.4 33 200-232 2-34 (86)
131 KOG4571 Activating transcripti 44.2 1.3E+02 0.0027 29.1 8.1 41 169-219 249-289 (294)
132 KOG0250 DNA repair protein RAD 44.1 3.9E+02 0.0083 30.2 12.6 59 166-228 406-465 (1074)
133 COG2433 Uncharacterized conser 43.8 3.7E+02 0.0079 28.7 11.9 26 166-191 420-445 (652)
134 PF06364 DUF1068: Protein of u 43.5 1.1E+02 0.0023 27.6 7.0 43 173-220 82-124 (176)
135 PF15463 ECM11: Extracellular 43.5 88 0.0019 26.1 6.3 60 122-182 70-133 (139)
136 TIGR01541 tape_meas_lam_C phag 43.5 3.1E+02 0.0067 26.4 11.7 22 206-227 83-104 (332)
137 PF06818 Fez1: Fez1; InterPro 42.8 2.7E+02 0.0058 25.5 10.0 71 169-239 32-106 (202)
138 PF06637 PV-1: PV-1 protein (P 42.3 3.8E+02 0.0083 27.2 11.7 24 225-249 379-402 (442)
139 PF07139 DUF1387: Protein of u 41.5 2.7E+02 0.0059 26.9 9.9 47 153-202 154-202 (302)
140 PF04102 SlyX: SlyX; InterPro 41.2 1.1E+02 0.0024 22.7 5.9 35 206-240 18-52 (69)
141 TIGR02894 DNA_bind_RsfA transc 41.1 2.6E+02 0.0056 24.8 10.5 28 206-233 104-131 (161)
142 PF09006 Surfac_D-trimer: Lung 40.9 60 0.0013 23.3 4.1 23 172-194 3-25 (46)
143 TIGR03319 YmdA_YtgF conserved 40.8 4.1E+02 0.0089 27.1 14.7 13 140-152 27-39 (514)
144 KOG2129 Uncharacterized conser 40.3 1.9E+02 0.004 29.8 8.9 14 207-220 144-157 (552)
145 PF12128 DUF3584: Protein of u 40.2 5.1E+02 0.011 28.9 13.1 35 204-238 467-501 (1201)
146 KOG1071 Mitochondrial translat 39.8 22 0.00049 34.6 2.4 41 41-82 47-87 (340)
147 PF14645 Chibby: Chibby family 39.4 35 0.00076 28.2 3.2 28 166-193 69-96 (116)
148 PF11544 Spc42p: Spindle pole 39.3 1.9E+02 0.0041 22.7 8.0 54 179-235 2-55 (76)
149 PHA02562 46 endonuclease subun 39.0 3.8E+02 0.0083 26.2 14.4 97 121-225 147-246 (562)
150 PF06632 XRCC4: DNA double-str 39.0 3.8E+02 0.0082 26.1 11.1 49 166-221 156-209 (342)
151 PF03962 Mnd1: Mnd1 family; I 38.3 2.8E+02 0.0061 24.4 9.5 101 123-238 67-167 (188)
152 KOG2264 Exostosin EXT1L [Signa 38.1 2.4E+02 0.0053 30.2 9.6 73 129-229 79-151 (907)
153 KOG0161 Myosin class II heavy 37.6 8.1E+02 0.018 29.6 14.6 83 121-203 1357-1442(1930)
154 TIGR01069 mutS2 MutS2 family p 37.3 5.5E+02 0.012 27.5 12.6 17 174-190 531-547 (771)
155 PF03943 TAP_C: TAP C-terminal 37.0 14 0.00029 26.3 0.4 31 53-83 12-42 (51)
156 PRK00846 hypothetical protein; 36.7 2E+02 0.0044 22.4 7.8 37 207-243 28-64 (77)
157 PF05055 DUF677: Protein of un 36.6 4.1E+02 0.0088 25.8 13.6 74 166-239 255-328 (336)
158 PRK13169 DNA replication intia 36.4 1.5E+02 0.0033 24.4 6.5 38 202-239 18-55 (110)
159 PF09738 DUF2051: Double stran 36.4 3.9E+02 0.0085 25.6 12.6 80 144-226 83-167 (302)
160 PRK04406 hypothetical protein; 36.3 2E+02 0.0042 22.1 7.8 37 206-242 25-61 (75)
161 COG1938 Archaeal enzymes of AT 36.1 56 0.0012 30.5 4.3 60 122-182 158-225 (244)
162 PRK10920 putative uroporphyrin 35.8 3.5E+02 0.0075 26.9 9.9 18 166-183 65-82 (390)
163 PF07989 Microtub_assoc: Micro 35.8 2E+02 0.0043 22.0 8.8 23 205-227 49-71 (75)
164 COG1792 MreC Cell shape-determ 35.4 1.1E+02 0.0023 28.7 6.1 14 202-215 93-106 (284)
165 PF03961 DUF342: Protein of un 35.3 3.1E+02 0.0067 26.9 9.5 73 167-239 333-408 (451)
166 PF00170 bZIP_1: bZIP transcri 35.3 1.7E+02 0.0036 21.0 8.3 30 204-233 31-60 (64)
167 PRK09458 pspB phage shock prot 35.2 76 0.0016 24.8 4.3 25 203-227 39-63 (75)
168 TIGR03007 pepcterm_ChnLen poly 35.2 3.3E+02 0.0071 26.6 9.7 91 126-228 143-233 (498)
169 PF15070 GOLGA2L5: Putative go 35.1 4.7E+02 0.01 27.4 11.2 70 170-239 162-242 (617)
170 KOG4797 Transcriptional regula 35.0 76 0.0017 26.8 4.5 25 166-190 65-96 (123)
171 PF10226 DUF2216: Uncharacteri 34.8 2.9E+02 0.0062 25.3 8.4 67 166-233 67-135 (195)
172 PF09311 Rab5-bind: Rabaptin-l 34.6 30 0.00064 30.1 2.2 61 166-226 20-84 (181)
173 PF13870 DUF4201: Domain of un 34.6 2.9E+02 0.0062 23.5 9.4 63 166-228 110-174 (177)
174 PF13870 DUF4201: Domain of un 34.5 2.9E+02 0.0063 23.5 10.8 70 166-236 47-121 (177)
175 PRK14011 prefoldin subunit alp 34.4 60 0.0013 27.8 4.0 26 201-226 19-44 (144)
176 PF12999 PRKCSH-like: Glucosid 34.4 3.1E+02 0.0066 24.5 8.5 17 210-226 157-173 (176)
177 PRK11166 chemotaxis regulator 34.1 2.6E+02 0.0057 25.6 8.2 48 135-182 43-99 (214)
178 TIGR01834 PHA_synth_III_E poly 34.0 4.5E+02 0.0098 25.6 13.4 99 123-228 206-318 (320)
179 PF11180 DUF2968: Protein of u 33.9 3.7E+02 0.008 24.5 10.8 18 145-162 84-101 (192)
180 PF10186 Atg14: UV radiation r 33.9 3.3E+02 0.0073 24.0 12.8 93 127-224 43-144 (302)
181 PF11180 DUF2968: Protein of u 33.7 3.7E+02 0.008 24.5 13.0 35 194-228 149-183 (192)
182 PRK04325 hypothetical protein; 33.7 2.1E+02 0.0046 21.7 7.8 36 206-241 23-58 (74)
183 PF08172 CASP_C: CASP C termin 33.4 1.4E+02 0.003 27.6 6.5 51 190-240 83-134 (248)
184 KOG4571 Activating transcripti 32.7 1.5E+02 0.0032 28.6 6.6 32 166-197 260-292 (294)
185 PRK00106 hypothetical protein; 32.4 5.9E+02 0.013 26.4 14.8 12 141-152 49-60 (535)
186 TIGR02231 conserved hypothetic 32.3 5E+02 0.011 25.8 10.6 18 220-237 152-169 (525)
187 PRK02793 phi X174 lysis protei 32.3 2.2E+02 0.0048 21.5 7.8 37 206-242 22-58 (72)
188 TIGR02976 phageshock_pspB phag 32.2 91 0.002 24.1 4.3 25 203-227 39-63 (75)
189 PRK04863 mukB cell division pr 32.2 8.8E+02 0.019 28.3 14.2 32 171-202 386-417 (1486)
190 PF05769 DUF837: Protein of un 32.2 3.6E+02 0.0077 23.8 11.5 22 201-222 72-93 (181)
191 KOG3856 Uncharacterized conser 32.0 1.1E+02 0.0023 26.4 5.0 35 199-233 10-44 (135)
192 PF05384 DegS: Sensor protein 31.6 2.4E+02 0.0051 24.7 7.2 50 191-240 19-68 (159)
193 KOG3119 Basic region leucine z 31.3 3E+02 0.0064 25.6 8.3 37 205-241 221-257 (269)
194 KOG4643 Uncharacterized coiled 31.2 8.4E+02 0.018 27.8 12.8 35 178-212 460-494 (1195)
195 PF03961 DUF342: Protein of un 31.1 3.3E+02 0.0072 26.7 9.0 24 202-225 385-408 (451)
196 PF09340 NuA4: Histone acetylt 31.1 95 0.0021 24.0 4.3 31 207-237 3-34 (80)
197 PF02841 GBP_C: Guanylate-bind 31.0 4.3E+02 0.0093 24.4 11.4 24 166-189 202-225 (297)
198 PF14193 DUF4315: Domain of un 31.0 1E+02 0.0023 24.2 4.5 45 192-241 18-62 (83)
199 TIGR01005 eps_transp_fam exopo 31.0 6.2E+02 0.014 26.3 11.9 19 62-80 202-220 (754)
200 PF08581 Tup_N: Tup N-terminal 30.7 2.6E+02 0.0056 21.8 8.4 13 214-226 58-70 (79)
201 KOG2751 Beclin-like protein [S 30.6 3.6E+02 0.0077 27.5 9.1 67 172-238 147-215 (447)
202 PRK02119 hypothetical protein; 30.6 2.4E+02 0.0052 21.4 7.8 37 206-242 23-59 (73)
203 PF09006 Surfac_D-trimer: Lung 30.5 82 0.0018 22.6 3.5 18 210-227 3-20 (46)
204 PF07544 Med9: RNA polymerase 30.3 1.3E+02 0.0028 23.2 4.9 33 187-222 50-82 (83)
205 COG0264 Tsf Translation elonga 30.2 38 0.00083 32.5 2.3 27 59-85 23-49 (296)
206 PF07412 Geminin: Geminin; In 30.1 1.3E+02 0.0029 27.4 5.6 23 166-188 123-145 (200)
207 cd07685 F-BAR_Fes The F-BAR (F 29.8 3.3E+02 0.0071 25.6 8.2 50 175-227 98-149 (237)
208 PF06008 Laminin_I: Laminin Do 29.7 4.2E+02 0.0092 23.9 14.8 105 127-240 132-247 (264)
209 PRK11459 multidrug resistance 29.6 5.4E+02 0.012 25.1 13.6 103 138-240 368-472 (478)
210 PRK10803 tol-pal system protei 29.6 3.8E+02 0.0082 24.6 8.6 10 153-162 44-53 (263)
211 KOG4083 Head-elevated expressi 29.4 1.4E+02 0.0031 27.1 5.6 20 210-229 98-117 (192)
212 PF09787 Golgin_A5: Golgin sub 29.1 6.1E+02 0.013 25.5 10.9 53 139-191 236-297 (511)
213 PHA03162 hypothetical protein; 29.0 91 0.002 26.9 4.1 34 215-248 15-48 (135)
214 PF10779 XhlA: Haemolysin XhlA 28.8 2.2E+02 0.0048 21.0 5.8 31 206-236 6-36 (71)
215 PF12805 FUSC-like: FUSC-like 28.7 3.1E+02 0.0066 25.0 7.9 73 149-221 180-258 (284)
216 PF04380 BMFP: Membrane fusoge 28.7 1.2E+02 0.0025 23.3 4.4 29 199-227 50-78 (79)
217 COG5185 HEC1 Protein involved 28.5 4.3E+02 0.0092 27.7 9.3 86 131-216 290-385 (622)
218 PF01486 K-box: K-box region; 28.5 1.7E+02 0.0037 22.7 5.4 25 166-190 73-97 (100)
219 PF14197 Cep57_CLD_2: Centroso 28.5 2.6E+02 0.0056 21.1 7.7 22 167-188 4-25 (69)
220 PF09730 BicD: Microtubule-ass 28.5 2.9E+02 0.0063 29.7 8.5 56 169-234 266-321 (717)
221 PF11336 DUF3138: Protein of u 28.3 1E+02 0.0022 31.6 4.9 63 166-228 23-105 (514)
222 COG4467 Regulator of replicati 28.2 73 0.0016 26.7 3.4 23 166-188 20-42 (114)
223 KOG0250 DNA repair protein RAD 28.2 9.3E+02 0.02 27.4 13.1 46 190-235 272-317 (1074)
224 PLN03025 replication factor C 28.2 64 0.0014 29.7 3.4 52 26-81 147-205 (319)
225 PF00170 bZIP_1: bZIP transcri 27.9 2.3E+02 0.005 20.2 7.1 24 166-189 24-47 (64)
226 PF08542 Rep_fac_C: Replicatio 27.8 2.5E+02 0.0054 20.6 9.7 81 55-171 4-85 (89)
227 PHA02047 phage lambda Rz1-like 27.6 2.6E+02 0.0055 23.1 6.3 32 166-197 32-63 (101)
228 PF02341 RcbX: RbcX protein; 27.4 2.2E+02 0.0048 23.7 6.1 29 120-157 50-78 (111)
229 PF06667 PspB: Phage shock pro 27.4 1.2E+02 0.0027 23.4 4.3 24 204-227 40-63 (75)
230 KOG1937 Uncharacterized conser 27.3 2.1E+02 0.0046 29.5 7.0 73 166-238 415-501 (521)
231 KOG3647 Predicted coiled-coil 27.3 5.9E+02 0.013 24.8 10.6 56 121-178 74-129 (338)
232 PF10267 Tmemb_cc2: Predicted 27.1 5.7E+02 0.012 25.5 9.8 48 176-226 270-318 (395)
233 PF06810 Phage_GP20: Phage min 26.7 3.3E+02 0.0072 23.3 7.3 51 173-223 18-68 (155)
234 PF06120 Phage_HK97_TLTM: Tail 26.2 4.7E+02 0.01 25.2 8.8 85 123-209 57-161 (301)
235 TIGR01730 RND_mfp RND family e 26.1 3.4E+02 0.0075 24.0 7.5 18 207-224 110-127 (322)
236 PF04803 Cor1: Cor1/Xlr/Xmr co 26.0 3E+02 0.0065 23.2 6.7 29 204-232 87-115 (130)
237 KOG4552 Vitamin-D-receptor int 25.9 4.7E+02 0.01 24.6 8.4 8 185-192 61-68 (272)
238 PRK10929 putative mechanosensi 25.8 6.4E+02 0.014 28.5 10.8 67 173-241 213-279 (1109)
239 PF10212 TTKRSYEDQ: Predicted 25.6 7.8E+02 0.017 25.7 10.7 46 142-187 406-460 (518)
240 COG4567 Response regulator con 25.5 64 0.0014 28.9 2.7 25 57-81 145-169 (182)
241 PF03980 Nnf1: Nnf1 ; InterPr 25.2 2.4E+02 0.0052 22.1 5.7 30 165-194 77-106 (109)
242 PF04375 HemX: HemX; InterPro 25.2 6.2E+02 0.014 24.4 9.9 23 205-227 99-121 (372)
243 COG1196 Smc Chromosome segrega 25.2 9.8E+02 0.021 26.6 15.3 124 124-251 379-520 (1163)
244 COG5281 Phage-related minor ta 25.1 4.8E+02 0.01 28.7 9.4 33 190-225 528-560 (833)
245 TIGR01730 RND_mfp RND family e 25.1 4.8E+02 0.01 23.0 8.4 13 210-222 106-118 (322)
246 PF06034 DUF919: Nucleopolyhed 25.0 2.8E+02 0.0061 20.9 5.7 42 172-215 5-47 (62)
247 KOG0447 Dynamin-like GTP bindi 24.8 3.3E+02 0.0071 29.4 8.0 65 146-216 203-268 (980)
248 PHA03162 hypothetical protein; 24.7 3.3E+02 0.0072 23.6 6.8 25 170-194 15-39 (135)
249 COG4026 Uncharacterized protei 24.6 2.6E+02 0.0056 26.6 6.6 61 168-238 128-188 (290)
250 PF15112 DUF4559: Domain of un 24.4 6.7E+02 0.014 24.4 10.9 20 166-185 227-249 (307)
251 PF02268 TFIIA_gamma_N: Transc 24.4 73 0.0016 22.9 2.4 27 132-160 20-46 (49)
252 PF04003 Utp12: Dip2/Utp12 Fam 24.3 3.3E+02 0.0071 20.8 7.9 54 185-238 54-109 (110)
253 KOG4797 Transcriptional regula 24.1 1.5E+02 0.0032 25.1 4.4 28 206-233 67-94 (123)
254 PF11471 Sugarporin_N: Maltopo 24.1 1.4E+02 0.003 22.1 3.9 23 205-227 38-60 (60)
255 PRK14127 cell division protein 24.0 93 0.002 25.7 3.2 21 206-226 51-71 (109)
256 PRK05564 DNA polymerase III su 24.0 74 0.0016 29.1 3.0 50 26-79 141-193 (313)
257 COG1792 MreC Cell shape-determ 23.9 4.8E+02 0.011 24.4 8.4 53 188-240 55-110 (284)
258 PF12718 Tropomyosin_1: Tropom 23.8 4.4E+02 0.0096 22.2 12.8 63 166-228 26-88 (143)
259 KOG4378 Nuclear protein COP1 [ 23.8 2.1E+02 0.0046 30.1 6.3 20 168-187 650-669 (673)
260 PRK14964 DNA polymerase III su 23.8 7.9E+02 0.017 25.0 10.6 53 26-82 164-223 (491)
261 PF03938 OmpH: Outer membrane 23.7 4E+02 0.0087 21.7 9.8 13 214-226 95-107 (158)
262 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.7 4.1E+02 0.0089 21.7 14.0 11 154-164 47-57 (132)
263 KOG3850 Predicted membrane pro 23.5 5E+02 0.011 26.4 8.6 36 185-226 83-118 (455)
264 PRK09609 hypothetical protein; 23.5 2.1E+02 0.0046 27.7 6.0 24 208-231 140-163 (312)
265 COG2959 HemX Uncharacterized e 23.1 5.8E+02 0.013 25.7 8.9 40 187-226 85-124 (391)
266 PF07412 Geminin: Geminin; In 23.1 2.6E+02 0.0056 25.6 6.1 24 166-189 130-153 (200)
267 PHA00276 phage lambda Rz-like 23.0 3.7E+02 0.008 23.5 6.8 29 210-238 53-81 (144)
268 COG3009 Uncharacterized protei 23.0 14 0.0003 33.5 -1.9 48 179-226 139-190 (190)
269 PF10481 CENP-F_N: Cenp-F N-te 22.9 7.1E+02 0.015 24.2 11.1 43 200-242 89-131 (307)
270 PRK14960 DNA polymerase III su 22.7 9.9E+02 0.021 25.8 12.2 52 26-81 166-224 (702)
271 PF06972 DUF1296: Protein of u 22.7 1E+02 0.0022 23.3 2.9 34 47-80 12-45 (60)
272 KOG2273 Membrane coat complex 22.6 7.5E+02 0.016 24.4 12.7 73 166-238 354-435 (503)
273 PF05622 HOOK: HOOK protein; 22.5 29 0.00062 36.0 0.0 63 171-233 455-522 (713)
274 PF07111 HCR: Alpha helical co 22.5 1E+03 0.022 25.9 11.4 74 166-241 476-556 (739)
275 cd07666 BAR_SNX7 The Bin/Amphi 22.4 6.3E+02 0.014 23.4 11.3 32 151-183 112-143 (243)
276 PF03148 Tektin: Tektin family 22.4 7.2E+02 0.016 24.1 14.5 98 140-237 30-161 (384)
277 PF11932 DUF3450: Protein of u 22.4 5.7E+02 0.012 22.9 10.9 61 166-236 47-107 (251)
278 PF03962 Mnd1: Mnd1 family; I 22.4 5.4E+02 0.012 22.6 8.9 15 204-218 115-129 (188)
279 smart00338 BRLZ basic region l 22.3 3E+02 0.0065 19.6 7.9 31 203-233 30-60 (65)
280 PRK05431 seryl-tRNA synthetase 22.3 7.6E+02 0.016 24.3 10.5 45 207-253 67-111 (425)
281 PF11236 DUF3037: Protein of u 22.2 80 0.0017 25.6 2.5 23 45-67 39-61 (118)
282 PF12711 Kinesin-relat_1: Kine 22.2 4.1E+02 0.0089 21.2 7.1 11 166-176 29-39 (86)
283 PF04977 DivIC: Septum formati 22.0 3E+02 0.0066 19.6 5.6 26 200-225 25-50 (80)
284 KOG4343 bZIP transcription fac 21.9 2.4E+02 0.0052 29.7 6.3 45 144-188 297-343 (655)
285 PRK10361 DNA recombination pro 21.9 8.7E+02 0.019 24.9 11.1 17 169-185 61-77 (475)
286 PF04899 MbeD_MobD: MbeD/MobD 21.9 3.7E+02 0.008 20.5 7.8 37 150-187 11-47 (70)
287 PF11981 DUF3482: Domain of un 21.9 4.8E+02 0.01 24.7 7.9 17 212-228 87-103 (292)
288 PF06188 HrpE: HrpE/YscL/FliH 21.9 5.5E+02 0.012 22.6 9.4 17 139-155 35-51 (191)
289 COG4942 Membrane-bound metallo 21.7 8.5E+02 0.018 24.7 14.6 58 145-203 146-203 (420)
290 COG1579 Zn-ribbon protein, pos 21.6 6.7E+02 0.014 23.4 9.8 60 166-225 108-168 (239)
291 TIGR01837 PHA_granule_1 poly(h 21.4 4.5E+02 0.0099 21.4 9.5 48 140-187 61-115 (118)
292 KOG4196 bZIP transcription fac 21.4 1.3E+02 0.0028 26.0 3.7 24 166-189 79-102 (135)
293 KOG4077 Cytochrome c oxidase, 21.2 91 0.002 27.2 2.7 27 55-81 83-111 (149)
294 KOG2070 Guanine nucleotide exc 21.2 2.2E+02 0.0047 29.9 5.8 33 202-237 626-658 (661)
295 PF12777 MT: Microtubule-bindi 21.0 6.5E+02 0.014 23.8 8.7 83 166-251 247-329 (344)
296 PRK13923 putative spore coat p 20.9 6E+02 0.013 22.6 10.5 44 149-192 29-79 (170)
297 KOG0976 Rho/Rac1-interacting s 20.9 9.4E+02 0.02 27.1 10.5 54 171-227 88-141 (1265)
298 TIGR03789 pdsO proteobacterial 20.9 5.8E+02 0.013 23.6 8.1 30 210-243 102-131 (239)
299 PRK06975 bifunctional uroporph 20.8 8.9E+02 0.019 25.3 10.3 24 205-228 384-407 (656)
300 PF09730 BicD: Microtubule-ass 20.8 1E+03 0.022 25.8 10.7 22 58-79 283-304 (717)
301 PF09731 Mitofilin: Mitochondr 20.8 8.6E+02 0.019 24.4 15.4 29 211-239 320-349 (582)
302 PF10241 KxDL: Uncharacterized 20.7 4.1E+02 0.0088 20.6 6.1 21 206-226 57-77 (88)
303 PF05812 Herpes_BLRF2: Herpesv 20.7 1.4E+02 0.003 25.3 3.6 22 171-192 6-27 (118)
304 PF13991 BssS: BssS protein fa 20.6 98 0.0021 24.1 2.6 22 210-231 46-67 (73)
305 PF09397 Ftsk_gamma: Ftsk gamm 20.5 81 0.0017 23.7 2.0 14 144-157 34-47 (65)
306 PRK11677 hypothetical protein; 20.5 1.5E+02 0.0032 25.3 3.8 17 222-238 63-79 (134)
307 PRK00409 recombination and DNA 20.3 1.1E+03 0.023 25.4 12.0 8 50-57 416-423 (782)
308 PF07989 Microtub_assoc: Micro 20.3 2.1E+02 0.0046 21.9 4.4 23 200-222 51-73 (75)
309 PRK12704 phosphodiesterase; Pr 20.3 9.3E+02 0.02 24.6 14.8 12 141-152 34-45 (520)
310 KOG1840 Kinesin light chain [C 20.2 7.3E+02 0.016 25.5 9.3 89 137-225 296-390 (508)
311 PF07716 bZIP_2: Basic region 20.2 3.1E+02 0.0068 19.1 7.3 39 188-226 11-52 (54)
No 1
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=98.96 E-value=8.4e-09 Score=104.41 Aligned_cols=121 Identities=27% Similarity=0.290 Sum_probs=104.6
Q ss_pred CChhhhHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHhhhhh-h--hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 025362 121 TDGSKWVDLFVHEMMSA-ADLDDARGRAARILEVFERSIITNSKA-S--KELEHASLKEHLQSLLNDNQILKKAVSIQHE 196 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~A-sd~dDAr~RAsRvLEafEksi~~r~~a-a--~~~E~~~lKeql~~l~~eN~iLKRAv~IQhe 196 (254)
-.|-.+|.-||.|.+.. ....+...|..+.++..|+.+...+.. + +..|..++|..++.|..+...|+++++.+++
T Consensus 307 qe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e 386 (632)
T PF14817_consen 307 QEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQE 386 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665544 447888889999999999987766444 3 7779999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 197 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 197 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
...+++.+.+++.++++++.+||+|||+|...||++..||.+.+-
T Consensus 387 ~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~ 431 (632)
T PF14817_consen 387 ALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPA 431 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChH
Confidence 999999999999999999999999999999999999999988653
No 2
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=98.28 E-value=1.2e-06 Score=59.23 Aligned_cols=38 Identities=42% Similarity=0.655 Sum_probs=34.6
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
.|..|+.+||++++..|+.+|+++++|+|.||..|.++
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 47899999999999999999999999999999998764
No 3
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=98.24 E-value=1.5e-06 Score=58.76 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.2
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
..++.|+.+||++++..++.+|++|++|++.||..|.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35889999999999999999999999999999999864
No 4
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=97.42 E-value=0.00022 Score=49.00 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=32.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (254)
+++-|..+||+..+.+||.+|+.|+.|+-.||..+
T Consensus 4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 38999999999999999999999999999999864
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.082 Score=41.08 Aligned_cols=67 Identities=31% Similarity=0.382 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 149 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 149 RvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
.|||-+|.-|....-. + +|.|...|||.-..|..|-.- .||.| +...+|..+||+--..+||+||.|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~------~q~~r----eaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN------AQHQR----EALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665555 3 899999999887777666443 34544 567789999999999999999987
No 6
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.05 E-value=0.091 Score=41.23 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 149 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 149 RvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
-+|+-+|.=|-+..-. + ++.|...||++-..|..|+.-++ +.| ++.++|.++||+--..+|++||.|
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~------~~r----~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ------HQR----EELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677667665555 4 99999999999888888877543 222 567789999999999999999987
No 7
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.61 E-value=0.021 Score=37.47 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (254)
..|..|..+ +.++....+||..||||++.||.-|
T Consensus 4 ~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEM--GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 457889999 9999999999999999999999865
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.00 E-value=0.34 Score=37.03 Aligned_cols=60 Identities=32% Similarity=0.431 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 149 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 149 RvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
.+|+-+|.=|.+..-. + ++.|+..||++-..|..+|.-|+ +|.++||+--.+++++|+.|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~-----------------~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK-----------------EENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665555 2 78888888777766665554443 55556666666667776654
No 9
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=94.54 E-value=0.34 Score=39.64 Aligned_cols=54 Identities=33% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 177 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 177 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
-..|-.+|.|||+||. +.+.++. .|+.-+-+....||++|+.|.+|.+|-+|-+
T Consensus 7 YsKLraQ~~vLKKaVi-------eEQ~k~~---~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVI-------EEQAKNA---ELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667799999997 2222333 5666888888999999999999999987744
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.51 E-value=0.75 Score=40.89 Aligned_cols=72 Identities=29% Similarity=0.303 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE-----------KEVELLKLVISQYQDQARNLELRNYALKL 234 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~-----------~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 234 (254)
++-+...+...++.+..||.+||+.=.-|---...|++-+ .|+..||..+-.|+++.|++|...=-...
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~ 96 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDE 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999987666555565666444 56667777777777777777665544444
Q ss_pred HHH
Q 025362 235 HLQ 237 (254)
Q Consensus 235 HL~ 237 (254)
+|.
T Consensus 97 el~ 99 (194)
T PF15619_consen 97 ELL 99 (194)
T ss_pred HHH
Confidence 444
No 11
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=93.94 E-value=1.3 Score=38.40 Aligned_cols=77 Identities=31% Similarity=0.371 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 025362 148 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQE-QKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 148 sRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQhe-R~~e~e-~~~~E~~~Lkql~~qyqEqir~L 225 (254)
=+|||.+|..+..+-.. .-|...|++..+.|..+..- ++...-|-+ +.-+++ .-.+|.+.|...+.+.|++.|.|
T Consensus 32 V~vLE~Le~~~~~n~~~--~~e~~~L~~d~e~L~~q~~~-ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L 108 (158)
T PF09744_consen 32 VRVLELLESLASRNQEH--EVELELLREDNEQLETQYER-EKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQL 108 (158)
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999888876644 34556677776666665543 333333333 333333 34577778888888888888888
Q ss_pred Hh
Q 025362 226 EL 227 (254)
Q Consensus 226 E~ 227 (254)
+.
T Consensus 109 ~~ 110 (158)
T PF09744_consen 109 EL 110 (158)
T ss_pred HH
Confidence 83
No 12
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=92.67 E-value=0.24 Score=31.90 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (254)
.|.+|..+ +.++.....+|..|++|++.|+.-|
T Consensus 4 ~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 4 KIDQLLEM--GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778887 7889999999999999999998765
No 13
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=92.52 E-value=0.18 Score=32.60 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.|..|..+ +.+.+.+..+|..|++|++.|+.-|.
T Consensus 4 ~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEM--GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 46777776 67799999999999999999998764
No 14
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.21 E-value=2.5 Score=37.94 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQH---ERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQh---eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
+++|...|+.++..+..+.. .+.--+|. ++.+...+...|.++|++.+.+.+.+++.||..|-.+.-..
T Consensus 98 le~el~~l~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWN--QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777766644 22212222 23344455678888899999999999999999998887544
No 15
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=91.01 E-value=4.1 Score=31.90 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhh-hhh-------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025362 151 LEVFERSIITNS-KAS-------KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 222 (254)
Q Consensus 151 LEafEksi~~r~-~aa-------~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi 222 (254)
.+.+.+++..|. ... +.++...++.+++.|..+.+.+-+.|+.--.-..+.++...|+..+|..+..+++++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777787774 221 777888899999999999888888887666444588889999999999999999999
Q ss_pred HHHHhhhHHHH
Q 025362 223 RNLELRNYALK 233 (254)
Q Consensus 223 r~LE~~NYaL~ 233 (254)
+.+|..-+.+-
T Consensus 91 ~~~e~~l~~~l 101 (108)
T PF02403_consen 91 KELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998776653
No 16
>PHA02047 phage lambda Rz1-like protein
Probab=90.95 E-value=1.6 Score=35.77 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 188 KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 188 KRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
.|+..|=|++-+.+ .+.+.+++..+..||+++..||.+--.=+--+++|-+.
T Consensus 26 ~r~~g~~h~~a~~l---a~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 26 YRALGIAHEEAKRQ---TARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57778888877544 47888999999999999999999988888888888774
No 17
>PF15058 Speriolin_N: Speriolin N terminus
Probab=89.87 E-value=0.3 Score=44.11 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 025362 168 LEHASLKEHLQSLLNDNQILKKA 190 (254)
Q Consensus 168 ~E~~~lKeql~~l~~eN~iLKRA 190 (254)
.||+.||+++ +|++||.-||||
T Consensus 19 ~ENeeLKKlV-rLirEN~eLksa 40 (200)
T PF15058_consen 19 RENEELKKLV-RLIRENHELKSA 40 (200)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHH
Confidence 4666666666 666666666666
No 18
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=89.36 E-value=0.61 Score=37.70 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 197 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR 197 (254)
..+|+..|+.++..|..||.|||+|..|=..|
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~~ 107 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 67889999999999999999999999886543
No 19
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.85 E-value=13 Score=33.69 Aligned_cols=90 Identities=29% Similarity=0.358 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHH
Q 025362 148 ARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQ 217 (254)
Q Consensus 148 sRvLEafEksi~~r~~a-a-----~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~q 217 (254)
..|.+.|||.|...... . .+.+...+....+.+..+-.-+-++|.=.|.|..-+.+. ..-=.-||.-+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46889999998886665 1 233344444455555556677888999888877544322 1222357889999
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 025362 218 YQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 218 yqEqir~LE~~NYaL~~HL~ 237 (254)
|.+.|+..|+..-+|.-|-.
T Consensus 123 y~~~l~~~eqry~aLK~hAe 142 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAE 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 20
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=87.01 E-value=13 Score=29.23 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 137 AADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 137 Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
...+++|-.|=.+.|..||++|..+-.. ..+- ..+.+.++.|..+..-|-..+--.-.|....+..+.|+.+ -+.
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~-~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~---rL~ 77 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLER-DRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR---RLD 77 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHH
Confidence 4568899999999999999999998776 1111 3455556666666665655555555566666666665555 555
Q ss_pred HHHHHHHH
Q 025362 217 QYQDQARN 224 (254)
Q Consensus 217 qyqEqir~ 224 (254)
-..|.||.
T Consensus 78 ~a~e~Ir~ 85 (89)
T PF13747_consen 78 SAIETIRA 85 (89)
T ss_pred HHHHHHHH
Confidence 55555554
No 21
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.00 E-value=14 Score=34.94 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
.+...|++.|+..+...++|+.+|+..|
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555565556666666666665544
No 22
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.82 E-value=9.2 Score=36.51 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhhHHHHH-------HHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILK-------KAVSIQHERHLEQ-EQKEKEVELLKLVISQYQDQARNLELRNYALKL 234 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLK-------RAv~IQheR~~e~-e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 234 (254)
+..-++.+...|..+|+-|+ --+--||...-.. .....++.|++.++.|.++.||.||+.|.-|--
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444444445555555443 3333344332211 234578999999999999999999999987753
No 23
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.76 E-value=12 Score=31.83 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNLELRNYALKL 234 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 234 (254)
+..-+..++.+-..+..-|+-|.++ .++-++...++. ..+++.+...++.+.+.+|++|...|-.|+-
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l-~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVL-LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 4444455555555555555555554 555555554443 5578888999999999999999999998864
No 24
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.14 E-value=11 Score=38.25 Aligned_cols=59 Identities=27% Similarity=0.266 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
+.++|+.||++.++|.+...-+.. .||..=..+..+..+|.++|+..+.+.+.+|..|+
T Consensus 78 l~~~N~~l~~eN~~L~~r~~~id~--~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 78 LISENEALKAENERLQKREQSIDQ--QIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555442222221 23333333334444555555555555555555554
No 25
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.74 E-value=16 Score=32.55 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
+..||..|.+-|..+..|+.-|++-+.- + +.-...++.+|..+...+++|+.|+..+-+|.....+..
T Consensus 53 i~~eN~~L~epL~~a~~e~~eL~k~L~~-y------~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 53 ISQENKRLSEPLKKAEEEVEELRKQLKN-Y------EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777665542 2 323345666777777777777777777777766665543
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.21 E-value=25 Score=29.14 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHhhh-hHHHHHHHHH
Q 025362 140 LDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQ-------HERHL-EQEQKEKEVE 209 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQ-------heR~~-e~e~~~~E~~ 209 (254)
|-.-|.|-....|.++.-+..-... . ++..+..||++++.+.++...++.-..-- ....+ +-++.++-..
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888777774444 2 55555555555555555544433222211 11111 1122223333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 210 LLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
.+.+...||.-.||+-|...-.|.-+|.
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788999999999999988887775
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.47 E-value=15 Score=31.52 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
-++|...|++++..+..+.+.|.- |+.....|...|.+.+.+-|++|..||..|..+.-||+-.-
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~----------EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLEL----------ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455667777777777777665532 44455577778888888899999999999999998887654
No 28
>PLN02678 seryl-tRNA synthetase
Probab=81.71 E-value=18 Score=36.16 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 245 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 245 (254)
+.+|-..++.+++.|..+.+.+-+.+..=..-..+.++...|+++||+.+.+.+++++.+|..-+.+-+ .+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~---------~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK---------TI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hC
Confidence 444555566666666666666666665311122355667788889999999999999988887774432 25
Q ss_pred CCCCCCCC
Q 025362 246 PRQFHPDI 253 (254)
Q Consensus 246 ~g~~~PDV 253 (254)
|-.-||||
T Consensus 109 PNi~~~~V 116 (448)
T PLN02678 109 GNLVHDSV 116 (448)
T ss_pred CCCCCccC
Confidence 66666766
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=81.25 E-value=73 Score=33.13 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 025362 130 FVHEMMSAADLDDARGRAARILEVFERSIIT 160 (254)
Q Consensus 130 ~V~EM~~Asd~dDAr~RAsRvLEafEksi~~ 160 (254)
++.++......+.+..++..+...++..+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (880)
T PRK03918 150 VVRQILGLDDYENAYKNLGEVIKEIKRRIER 180 (880)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777666665544
No 30
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.97 E-value=9.6 Score=34.53 Aligned_cols=63 Identities=29% Similarity=0.382 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEV--------ELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E~--------~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
|+.+||+-.++|..||+=|+-.-.+.- .|+|--. ..+|- .-++|-|++|+.+|+.||..--.|
T Consensus 56 EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999987776654 3554322 22332 345778889999999888765554
No 31
>PF15058 Speriolin_N: Speriolin N terminus
Probab=80.13 E-value=4.4 Score=36.79 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 217 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q 217 (254)
.+-|.+|+++|.+||.=||+-|..= +|.+.||.++.|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi-----------rEN~eLksaL~e 43 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI-----------RENHELKSALGE 43 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 3568899999999999999988653 456677777554
No 32
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=79.70 E-value=18 Score=35.25 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLV----------ISQYQDQARNLELRNYALK 233 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~~~Lkql----------~~qyqEqir~LE~~NYaL~ 233 (254)
+|-.|-.|+.|++....||.||-+. .||| |.|...|-+++|... |-.||-|+..|-..--.|-
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~-----hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKM-----HRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999885 3676 666667777777654 4568888777766666666
Q ss_pred HHHHHHh
Q 025362 234 LHLQRAQ 240 (254)
Q Consensus 234 ~HL~qA~ 240 (254)
--|-.|.
T Consensus 80 RELARaK 86 (351)
T PF07058_consen 80 RELARAK 86 (351)
T ss_pred HHHHHhh
Confidence 6665554
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.70 E-value=57 Score=36.17 Aligned_cols=70 Identities=27% Similarity=0.267 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH------------------HHHHHHHhhhh----------------------HHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK------------------AVSIQHERHLE----------------------QEQKE 205 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR------------------Av~IQheR~~e----------------------~e~~~ 205 (254)
+|.|..++||+++.|..+--|||- =+-+||.|+|| .|.++
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888884 24577777654 44566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
.|+..|++.-...+.++-.+|-..--|.-.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766665555433
No 34
>KOG4588 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=1.8 Score=40.45 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=29.5
Q ss_pred cCCCCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
|||.||-+++|-||++.=-++|.+|.-|....
T Consensus 1 Mfp~~Dye~ie~VlranlgavD~tid~llaM~ 32 (267)
T KOG4588|consen 1 MFPYDDYEDIEGVLRANLGAVDRTIDDLLAMF 32 (267)
T ss_pred CCCcchHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 79999999999999998889999999998765
No 35
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.60 E-value=10 Score=30.91 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
+..|...||.++..|+.||+-|+
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777776665
No 36
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.58 E-value=21 Score=31.04 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 148 ARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 148 sRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
..-|+.+++.+...... . +..|+..|++.+..+..+-.-..+++.+.+ -|+..|.-.+..-+++++.|
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~----------DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ----------DELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555 2 777777777777777666666666654444 67777777888888999999
Q ss_pred HhhhHHHH
Q 025362 226 ELRNYALK 233 (254)
Q Consensus 226 E~~NYaL~ 233 (254)
|.-|--|-
T Consensus 171 ~~En~~Lv 178 (194)
T PF08614_consen 171 EEENRELV 178 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887764
No 37
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=79.46 E-value=21 Score=28.71 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
+..||+...+.+..-...|.-|+..+.+.+.-. ++..+.-+++++-..+++|+||+...+|
T Consensus 30 L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~---~~~~~~~qq~r~~~e~~~e~ik~~lk~d 90 (110)
T PF10828_consen 30 LRAENKAQAQTIQQQEDANQELKAQLQQNRQAV---EEQQKREQQLRQQSEERRESIKTALKDD 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 556676666666666666777777666444333 3334445577788999999999876654
No 38
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.11 E-value=16 Score=37.08 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQAR 223 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir 223 (254)
+.+....|+++++.++.+.+.|+.
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555554
No 39
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=79.04 E-value=28 Score=34.02 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=45.2
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhcchhHHHHHHHHhhhhccc
Q 025362 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (254)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~v~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (254)
.+||+. .||.+ ++.+..|+.+= =+||+..+..+++-||+||-.||--|-+|.+..
T Consensus 177 ~SRC~K----frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~g 238 (346)
T KOG0989|consen 177 VSRCQK----FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLG 238 (346)
T ss_pred HhhHHH----hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccC
Confidence 668864 57777 56677777664 479999999999999999999999999988743
No 40
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=78.72 E-value=3.1 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.1
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+|.++..+- +.++.+-...|+.|+.||+.||..+.+
T Consensus 3 ~i~~F~~iT-g~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSIT-GADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH--SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345555555 568899999999999999999988765
No 41
>COG4797 Predicted regulatory domain of a methyltransferase [General function prediction only]
Probab=76.70 E-value=1.8 Score=40.74 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.2
Q ss_pred HHhcCC-CCCHHHHHHHHhhcchhHH
Q 025362 47 LLQMFP-DVDPEVVKSVLGEHDNKIE 71 (254)
Q Consensus 47 L~~lFP-~md~q~le~aLe~cgndlD 71 (254)
|..+|| .|++++.|+.+..||||+=
T Consensus 4 ls~~f~~nm~~~i~E~L~A~~gdD~i 29 (268)
T COG4797 4 LSATFPGNMPEHIEEKLLAECGDDII 29 (268)
T ss_pred hhhhccccCCHHHHHHHHhhcccchh
Confidence 788999 8999999999999999974
No 42
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.38 E-value=14 Score=41.02 Aligned_cols=53 Identities=23% Similarity=0.148 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCC
Q 025362 200 EQEQKEKEVELL-KLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPD 252 (254)
Q Consensus 200 e~e~~~~E~~~L-kql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~PD 252 (254)
+++++.+|...| +++-..|+|+||.+|.-|-++.-||..+..+-..+|.|+-|
T Consensus 390 el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~sgikv~d 443 (1714)
T KOG0241|consen 390 ELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLENSGIKVGD 443 (1714)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 445555665554 66777899999999999999999999998877777877543
No 43
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=76.19 E-value=27 Score=26.61 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-------hHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHL-------EQEQK-EKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~-------e~e~~-~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
+-+++..|+.||.-||-|+.-=|.=++ .+.+. -.|..-++..+....+-|.+|...|
T Consensus 4 ~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~EN 68 (68)
T PF11577_consen 4 MQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEEN 68 (68)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 456888999999999998864332222 22222 2444555666666666666665443
No 44
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=76.19 E-value=39 Score=29.72 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHH------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHH-H---H
Q 025362 123 GSKWVDLFVHEMMSAADLDDARGRAARIL------EVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKA-V---S 192 (254)
Q Consensus 123 g~eWVel~V~EM~~Asd~dDAr~RAsRvL------EafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRA-v---~ 192 (254)
.-+|++++.+-..+.-.+.|-+.+..==| ..=+..+.+|-.- +......+.++++.|.+.-..+-.- | .
T Consensus 42 dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~l-Le~~~~~l~~ri~eLe~~l~~kad~vvsYql 120 (175)
T PRK13182 42 DLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQ-LEAQLNTITRRLDELERQLQQKADDVVSYQL 120 (175)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45899999999999999999988663111 0001111111111 3333344444554444433333322 2 2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025362 193 IQHERHLEQEQKEKEVELLKLVISQYQ 219 (254)
Q Consensus 193 IQheR~~e~e~~~~E~~~Lkql~~qyq 219 (254)
.||.| |.|++...++.|.+.+++-+
T Consensus 121 l~hr~--e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 121 LQHRR--EMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46633 78888899999888888843
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.81 E-value=43 Score=27.52 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
+...||+++..+..+..-|+..+..........+. -..+...|+.-+...+.++.-|...|=-|--+|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444444443333 224444555555555555555555555444333
No 46
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.72 E-value=15 Score=30.37 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+.+|...||.++..|+.||+-|+-
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888887763
No 47
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=75.57 E-value=21 Score=33.77 Aligned_cols=50 Identities=30% Similarity=0.278 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK----AVSIQHERHLEQEQKEKEVELLKLVI 215 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR----Av~IQheR~~e~e~~~~E~~~Lkql~ 215 (254)
+..|.+-|-|+-++|..||..|.+ .++-||+--.+++..++|+..|||.+
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 555667777777888888877754 57888988889999999999988754
No 48
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.10 E-value=40 Score=33.08 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKL 234 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 234 (254)
+.++-..++.+++.|..+.+.+-+.+..-.....+.++...|...||+.+.+..++++.+|..-+.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777775422122245556667777777777777777777766555433
No 49
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.94 E-value=37 Score=35.32 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
++.|.+.--++++.|..+|.-||.-|..|.-=-.|.+.+++|+.+|++-|..-+-++-.|-..-
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777899999999999999999977777899999999999888876655555544433
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.46 E-value=38 Score=35.03 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE----KEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~----~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
.+....+.+..|+..|+.-..-+-.|..++++-. +......+++.++++-...+|+.+.-|.-+|+
T Consensus 196 el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk 265 (546)
T PF07888_consen 196 ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLK 265 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443221 22222333334444433444444444444443
No 51
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=72.24 E-value=37 Score=33.27 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-E-QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 243 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~-e-~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 243 (254)
+.++-..++.+++.|..|.+.+-+.+.. ..+.+ + .++...+...||+.+.+.+++++.+|..-+.+-++
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 105 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGK-AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS-------- 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4444455556666666665555555533 11111 2 34445556666665555555555555554443332
Q ss_pred CCCCCCCCCC
Q 025362 244 SIPRQFHPDI 253 (254)
Q Consensus 244 ~~~g~~~PDV 253 (254)
+|-.-||||
T Consensus 106 -lPN~~~~~v 114 (418)
T TIGR00414 106 -IPNIPHESV 114 (418)
T ss_pred -CCCCCCccC
Confidence 455556655
No 52
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=71.84 E-value=18 Score=27.66 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 194 QHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 194 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
-..|.++.+.+++++.+|++..-+-+--++.|+..-+.+..|.|.+++
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~E 72 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQE 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHH
Confidence 456889999999999999999998889999999999999999998854
No 53
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.16 E-value=79 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL 210 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~ 210 (254)
+..|...|+.+++.|...|.-|++-|.-|+....+.+.+..++..
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777888777777777666655544443
No 54
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=71.01 E-value=64 Score=29.23 Aligned_cols=37 Identities=32% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 180 LLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 180 l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
+.+||..||+=++....+..+++...+|.++||+++.
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333344444556666665543
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.48 E-value=34 Score=30.25 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH
Q 025362 149 RILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 149 RvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iL 187 (254)
+.|+.|...... ... +.+||..|++++..|..+|.-|
T Consensus 87 ~fLq~l~~~~~~-~~~-~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 87 SFLQNLKTTNPS-DQA-LQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456555532211 111 5666666666666666555444
No 56
>CHL00098 tsf elongation factor Ts
Probab=68.33 E-value=6.6 Score=35.29 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
|-.||.. -+-.-.--.+||++||+|+|.||.-|..--+
T Consensus 5 ik~LR~~-Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~ 42 (200)
T CHL00098 5 VKELRDK-TGAGMMDCKKALQEANGDFEKALESLRQKGL 42 (200)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 4455554 3344456789999999999999999988543
No 57
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=68.27 E-value=4 Score=27.32 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (254)
++.++|+.+|+.||.++..|-+.|.
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999988875
No 58
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.03 E-value=32 Score=34.98 Aligned_cols=19 Identities=5% Similarity=0.230 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHhhH
Q 025362 166 KELEHASLKEHLQSLLNDN 184 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN 184 (254)
.|.-...|+++|+.+.+|.
T Consensus 74 qQ~kasELEKqLaaLrqEl 92 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555666666553333
No 59
>PRK09039 hypothetical protein; Validated
Probab=67.61 E-value=81 Score=30.20 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHH--HHHHhhhhh--h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 025362 140 LDDARGRAARILEVFE--RSIITNSKA--S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL 199 (254)
Q Consensus 140 ~dDAr~RAsRvLEafE--ksi~~r~~a--a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~ 199 (254)
...+..|+...=+.+. |.+.+.+.+ . ++.|...||+|+..|..+-..++.--.-++.+..
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665533332 222222222 1 5555555555555554444444444444444433
No 60
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=66.60 E-value=16 Score=34.00 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
+++||+.||+++..+..+-.. .+++..+|..+||+++.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~-------------~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEI-------------LTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhc
Confidence 777888888877665222211 12234566667776653
No 61
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=66.42 E-value=32 Score=30.70 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhh--------hhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 025362 149 RILEVFERSIITNS--------KASKELEHASLKEHLQSLLNDNQILKKA 190 (254)
Q Consensus 149 RvLEafEksi~~r~--------~aa~~~E~~~lKeql~~l~~eN~iLKRA 190 (254)
-||.+|||.+.+.= ..++.+=+..+|+||-.++.|-+-||..
T Consensus 108 VvL~~FEk~~~eYkq~ieS~~cr~AI~~F~~~~keqL~~~i~evq~lK~l 157 (175)
T PF13097_consen 108 VVLSAFEKTALEYKQSIESKICRKAINKFYSNFKEQLIEMIKEVQELKNL 157 (175)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988731 1135556666777777777777666653
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.39 E-value=64 Score=29.05 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
+...+|++.++.-++..+.++.+++.
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555543
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.37 E-value=81 Score=32.25 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 148 ARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 148 sRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.-.+++..|+|..+... ++--.+.+.+++..+..+|..|.. -|--+.+.++++++ ++|..+..|+++|.-|+.
T Consensus 370 ~~~~e~~kk~~e~k~~q-~q~k~~k~~kel~~~~E~n~~l~k---nq~vw~~kl~~~~e---~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQ-LQTKLKKCQKELKEEREENKKLIK---NQDVWRGKLKELEE---REKEALGSKDEKITDLQE 442 (493)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34455566666665555 222222222333333333433322 23333333333333 455577777777777777
Q ss_pred hhHHHHHHHH
Q 025362 228 RNYALKLHLQ 237 (254)
Q Consensus 228 ~NYaL~~HL~ 237 (254)
.--=|.+||-
T Consensus 443 QlrDlmf~le 452 (493)
T KOG0804|consen 443 QLRDLMFFLE 452 (493)
T ss_pred HHHhHheehh
Confidence 7666777765
No 64
>PRK02224 chromosome segregation protein; Provisional
Probab=65.49 E-value=1.8e+02 Score=30.45 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
++.+...+++++..+..+...|++-+.--+.+.++++...+++..+..-+...+++|..+|.
T Consensus 211 ~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666555555556555555555544444444444444433
No 65
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.23 E-value=58 Score=24.69 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
+..||..|++++..+..|+.-|+
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666665554
No 66
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=64.79 E-value=7.7 Score=32.37 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+.+..-..+||++|++||-.||..|..
T Consensus 88 gvs~~~A~~AL~~~~gDl~~AI~~L~~ 114 (115)
T PRK06369 88 GVSEEEARKALEEANGDLAEAILKLSS 114 (115)
T ss_pred CcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence 455566788999999999999998753
No 67
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=64.73 E-value=8.5 Score=34.44 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=30.4
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhccc
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (254)
+|-.||.. -+....--.+||++|++|+|.||.-|..--+..
T Consensus 7 ~ik~LR~~-tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~ 47 (198)
T PRK12332 7 LVKELREK-TGAGMMDCKKALEEANGDMEKAIEWLREKGLAK 47 (198)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhH
Confidence 45566655 344555678999999999999999999854333
No 68
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.46 E-value=13 Score=27.89 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
.||.-||.-+...++++..||..|.-|+-+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888888887755
No 69
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.36 E-value=1.1e+02 Score=28.85 Aligned_cols=99 Identities=28% Similarity=0.381 Sum_probs=64.0
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH----------
Q 025362 121 TDGSKWVDLFVHEMMSAADLDDARGRAAR---ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL---------- 187 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~Asd~dDAr~RAsR---vLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iL---------- 187 (254)
..|+.--++|=+|+ ++-++|.+|.. =+.-+|++|.+.... ...+...++.++..+..+..-|
T Consensus 131 ~~GA~LydlL~kE~----~lr~~R~~a~~r~~e~~~iE~~l~~ai~~-~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 131 QRGASLYDLLGKEV----ELREERQRALARPLELNEIEKALKEAIKA-VQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHHHhchH----hHHHHHHHHHcCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999998 56666766654 145588888876666 6777777777777777665544
Q ss_pred -----HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 188 -----KKAVSIQHERH---LEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 188 -----KRAv~IQheR~---~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
||-=..|+-|- -|||....||+. +-..|=++.|.|+=
T Consensus 206 LER~qKRL~sLq~vRPAfmdEyEklE~EL~~---lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 206 LERNQKRLQSLQSVRPAFMDEYEKLEEELQK---LYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHHHHhHHH
Confidence 33334444442 255555554444 66667777766653
No 70
>PRK11637 AmiB activator; Provisional
Probab=64.24 E-value=1.4e+02 Score=28.85 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=5.2
Q ss_pred HhcCCCchHH
Q 025362 134 MMSAADLDDA 143 (254)
Q Consensus 134 M~~Asd~dDA 143 (254)
+.++.++++.
T Consensus 145 Ll~a~~~~~~ 154 (428)
T PRK11637 145 ILSGEESQRG 154 (428)
T ss_pred HhcCCChhHH
Confidence 4456665443
No 71
>PLN02320 seryl-tRNA synthetase
Probab=64.00 E-value=1e+02 Score=31.49 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 245 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 245 (254)
+.++...++.+++.|..|.+-+-+.+.. ..-..+.++...|...||+.+....++++.+|. -|.+-.. .+
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~-------~l~~~~l--~i 167 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD-------ELQLEAQ--SI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--hC
Confidence 3344455566666666666555555533 111123444445555555555555555544444 4443222 25
Q ss_pred CCCCCCCC
Q 025362 246 PRQFHPDI 253 (254)
Q Consensus 246 ~g~~~PDV 253 (254)
|-.-||||
T Consensus 168 PN~~h~~V 175 (502)
T PLN02320 168 PNMTHPDV 175 (502)
T ss_pred CCCCCccC
Confidence 66666665
No 72
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.62 E-value=56 Score=27.62 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
+..|+..|++++..+..++..|+--++.=..... -++...++.+|++-+.++++++..|..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555555555555544444333332 233556666666677777777766654
No 73
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=62.29 E-value=1.3e+02 Score=29.36 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 150 ILEVFERSIITNSKA---SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 150 vLEafEksi~~r~~a---a~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
-++..++.+..-... ....|...+..+...|.++-..+|.-+..=...+.++.+.++|++-.+++..+|-.+.+.+.
T Consensus 321 q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~ 400 (458)
T COG3206 321 QLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELS 400 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444 14446677777888888888888888888888888888888888888888777777766665
Q ss_pred hh
Q 025362 227 LR 228 (254)
Q Consensus 227 ~~ 228 (254)
..
T Consensus 401 ~~ 402 (458)
T COG3206 401 IQ 402 (458)
T ss_pred Hh
Confidence 43
No 74
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=61.95 E-value=25 Score=28.81 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025362 207 EVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE 226 (254)
|+..|+.-|++-..+|+.|+
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555543
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.60 E-value=1.2e+02 Score=33.54 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 204 KEKEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
...|+|.|+.+-+.-||||--|.-..+.|.+-
T Consensus 377 ve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 377 VEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 34678889999999999999998888888877
No 76
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=61.24 E-value=76 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
++++.+.+.|+..|..|.|+|+.+-
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999998774
No 77
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=61.22 E-value=9.5 Score=31.95 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
+.+..-..+||++|++||-.||-.|.
T Consensus 90 gvs~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 90 NVSKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 34555577899999999999998774
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.74 E-value=1.5e+02 Score=27.92 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
-+.|...+|++|..+..+..-+|+-+.-..... +....++..++....+++++|..+|
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el---~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEEL---EELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777776665444443 4444555566667777777777666
No 79
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=60.70 E-value=82 Score=24.87 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 187 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 187 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
+++.+.-=+.=.+++..+..+++..-+.+++-.++|..||..-|.|.-+.+
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455666777777778888888899999998888876654
No 80
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=60.62 E-value=1.4e+02 Score=27.67 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=33.7
Q ss_pred Chhhh----HHHHHHH---HhcCCC-chHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 025362 122 DGSKW----VDLFVHE---MMSAAD-LDDARGRAARILEVFERSIITNSKASKELEHASLKEH 176 (254)
Q Consensus 122 ~g~eW----Vel~V~E---M~~Asd-~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeq 176 (254)
=.+.| .-+|..| |.-.-| +.+||.-|..|+.+=++.=+.--.. .++|-..|+++
T Consensus 21 I~a~~~~~~L~~~~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~q-aqqqad~L~~~ 82 (224)
T PRK15354 21 IESQWITLQLTLFAQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVE-QQQELACLRKN 82 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 47899 5566678 765555 5789999999998766543331111 44444444444
No 81
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=60.59 E-value=53 Score=27.97 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025362 150 ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 150 vLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~ 192 (254)
+|..+||-+.+ ..|-+..+..||..||-|+.
T Consensus 72 il~LheKvl~a------------KdETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 72 ILNLHEKVLDA------------KDETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHH
Confidence 55556665544 45668899999999999875
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.21 E-value=1.6e+02 Score=30.83 Aligned_cols=37 Identities=35% Similarity=0.358 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 202 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e 202 (254)
+++|...|.++++...++|.-|-+...=|-+|..+++
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE 128 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELE 128 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666555555555555554
No 83
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.07 E-value=1.5e+02 Score=30.94 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h----hhHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHhhh--hHHHHHHHHHH
Q 025362 140 LDDARGRAARILEVFERSIITNSKA-S----KELEHASLKEHLQSLLNDNQILKKAV--SIQHERHL--EQEQKEKEVEL 210 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~a-a----~~~E~~~lKeql~~l~~eN~iLKRAv--~IQheR~~--e~e~~~~E~~~ 210 (254)
++|+-.-+.++=|-+++-+.+.+.- . +--+..-+++.+--+..||..|+--+ .|+-.|+- |+++.+-.-.+
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE 286 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAE 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4666666677767777666664443 1 22244555555555566665555432 12222221 22233333333
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC-CCCCC
Q 025362 211 LKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPR-QFHPD 252 (254)
Q Consensus 211 Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g-~~~PD 252 (254)
+-+.+...||.|+.| .+--++++|.+.+..+ | +|+|+
T Consensus 287 ~m~~~~EaeeELk~l-rs~~~p~~~s~~~~~~----~~~fp~~ 324 (596)
T KOG4360|consen 287 CMQMLHEAEEELKCL-RSCDAPKLISQEALSH----GHHFPQL 324 (596)
T ss_pred HHHHHHHHHHHHHhh-ccCCCcchhHHHHHHh----hhhCChh
Confidence 444666666666666 3556788999988864 4 56654
No 84
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=60.01 E-value=71 Score=28.63 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 025362 201 QEQKEKEVELLKLVISQYQDQARNLELRNY 230 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NY 230 (254)
++++.. .||.+=+=|.|||-+||..|-
T Consensus 139 Le~ke~---el~~~d~fykeql~~le~k~~ 165 (187)
T PF05300_consen 139 LEEKEA---ELKKQDAFYKEQLARLEEKNA 165 (187)
T ss_pred HHhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344445 456688889999999999884
No 85
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=59.48 E-value=6.8 Score=37.05 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhccc
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (254)
|-.||.. -+-.----.+||++|++|+|.||+-|..--+..
T Consensus 8 IK~LRe~-Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~ak 47 (290)
T TIGR00116 8 VKELRER-TGAGMMDCKKALTEANGDFEKAIKNLRESGIAK 47 (290)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhH
Confidence 4445443 222233468999999999999999998854433
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.08 E-value=1.1e+02 Score=25.60 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhHH
Q 025362 169 EHASLKEHLQSLLNDNQ 185 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~ 185 (254)
|...||.++.+|..+..
T Consensus 31 E~~~l~~el~~l~~~r~ 47 (120)
T PF12325_consen 31 ELASLQEELARLEAERD 47 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444433333
No 87
>PRK09377 tsf elongation factor Ts; Provisional
Probab=57.73 E-value=7.6 Score=36.74 Aligned_cols=38 Identities=32% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
|-.||.. -+-.-.--.+||++|++|+|.||+-|..--+
T Consensus 9 IK~LR~~-Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~ 46 (290)
T PRK09377 9 VKELRER-TGAGMMDCKKALTEADGDIEKAIEWLRKKGL 46 (290)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHhch
Confidence 4445544 2233345689999999999999999988433
No 88
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.08 E-value=34 Score=33.09 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQ 194 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQ 194 (254)
+..|..+|++.+..+..++.+|+.-++=|
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 77788888888888888888888766554
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.82 E-value=1.9e+02 Score=28.32 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
.+.+...++.++..+..+-..+++.+.-+-+... +.++...++..+...+.+.+.++..|+.+-
T Consensus 179 ~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444433332222111 222333444444444444444444444333
No 90
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.67 E-value=16 Score=37.95 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhh-h---hhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 025362 150 ILEVFERSIITNSKA-S---KELEH-ASLKEHLQSLLNDNQILKKAVSIQHERH 198 (254)
Q Consensus 150 vLEafEksi~~r~~a-a---~~~E~-~~lKeql~~l~~eN~iLKRAv~IQheR~ 198 (254)
||.-..+.|..|-.| + -+||. .-|+-.|.+|+.||.+||+-=+---.|.
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566666777777666 3 44444 4466677777777777776444444343
No 91
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.63 E-value=1.9e+02 Score=31.18 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
++.....++.++..+.-||..|.+++ .+|-+-..+...+..+...-+.-.+.++..+|..|-+|+|-++
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l---~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKAL---QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778889999999999999988 4566666666666666666677778888888888988888765
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.42 E-value=2.1e+02 Score=32.79 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH-HHH-HHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK-AVS-IQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR-Av~-IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
..++++.|.+.++.+..+-..|+| =-+ .|| .+++++++ ..+++.|+..+.+|+++++-++..|-.+.-+++..
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~-~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv 541 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQH-EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455666677777777777777775 222 233 45555543 35667788889999999999998888887777654
Q ss_pred h
Q 025362 240 Q 240 (254)
Q Consensus 240 ~ 240 (254)
-
T Consensus 542 ~ 542 (1317)
T KOG0612|consen 542 N 542 (1317)
T ss_pred H
Confidence 3
No 93
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=56.40 E-value=34 Score=35.36 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=39.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 191 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 191 v~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
..|=+.|.+|- +|+++|.--++-|=|+||-||..|-.|..-+......
T Consensus 31 s~ir~sR~rEK----~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 31 SPIRDSREREK----KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred hhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666655 6888999999999999999999999999988877654
No 94
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.38 E-value=1.3e+02 Score=25.81 Aligned_cols=67 Identities=24% Similarity=0.297 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS----QYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~----qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
...|...||.||...-.+-.=||.. ..+.++.+.++..|+.-.. .|+.++..+.. ||||...|..|.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~-------~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~ak 95 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKS-------AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAK 95 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 4456666777776666666666652 3455666666767766666 88888888765 899999998764
No 95
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.05 E-value=1.4e+02 Score=26.22 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
...++.++..|..++.-|+.-+.-.-.+....+.+..+..+ .....+++.|.-|..+|--|+-+|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777777777777666554444333333333322 34567888999999999888888764
No 96
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=55.76 E-value=20 Score=28.03 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSI 193 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~I 193 (254)
+++||.-||++|+.|..|-.-+||-+.|
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~~qI 32 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKREFQI 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7788888888888777776666666555
No 97
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=55.65 E-value=20 Score=31.15 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 177 LQSLLNDNQILKKAVSIQHERHLEQEQK-EKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 177 l~~l~~eN~iLKRAv~IQheR~~e~e~~-~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
.++|+.+-.-|.|+++.++-|.++.... ..-...|.+-+.+|+|-.|+|...+-=....|.++
T Consensus 72 aEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~ 135 (173)
T PF07445_consen 72 AEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQA 135 (173)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777788999999999888876541 24556678899999999999998877666666654
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.40 E-value=2e+02 Score=27.32 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
+.+|...|.++|..|-+|+.-|.+-.........+.+ .--++...++..+.++++....|+..--..+-||..-..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444443333222222221 112444455556666667777776666666666666655
Q ss_pred cC
Q 025362 242 SS 243 (254)
Q Consensus 242 ~~ 243 (254)
.+
T Consensus 135 tN 136 (314)
T PF04111_consen 135 TN 136 (314)
T ss_dssp --
T ss_pred cC
Confidence 44
No 99
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=54.26 E-value=95 Score=23.62 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
-|+..|+.|.-.|..|-.+.-+.|.+--++- ..+...-.| ++.-+|+++++.++..=-+|
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al-rlal~ys~r~~e~~~~llal 65 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL-RLALKYSERCKEAYEVLLAL 65 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999988876653322 233444455 78889999999888754444
No 100
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.74 E-value=98 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.225 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iL 187 (254)
+++||+.||+++..|..++.-+
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 74 LREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444443
No 101
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=53.49 E-value=32 Score=33.42 Aligned_cols=15 Identities=40% Similarity=0.368 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSL 180 (254)
Q Consensus 166 ~~~E~~~lKeql~~l 180 (254)
+.+||..||+++..|
T Consensus 62 L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 62 LETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555444
No 102
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.47 E-value=75 Score=24.25 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
++++|..|+++...|..||.-||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 77788888888888888888887
No 103
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=52.51 E-value=16 Score=30.99 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.+..-..+||++||.||-.||=+|.
T Consensus 97 VsreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 97 VSREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHhc
Confidence 3344467899999999999998875
No 104
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.12 E-value=96 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 187 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 187 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
.|.+|--+|.+. .++..+|+..+.+|+.+++.||.+.
T Consensus 49 Ikq~FekkNqks------a~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 49 IKQVFEKKNQKS------AQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555555333 5889999999999999999999987
No 105
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=51.68 E-value=3.4e+02 Score=29.20 Aligned_cols=79 Identities=24% Similarity=0.200 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQHERHLEQEQK----EKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPR 247 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~----~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g 247 (254)
.|.++.+.|...+.-|-+..+--++...+|.++ ..++.+|++.++..|--+-..=..+|-|-+||-.++.....+|
T Consensus 52 ~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~ 131 (698)
T KOG0978|consen 52 ELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYG 131 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 345555555555566666666666666666543 4778888888888888777777888999999999998776666
Q ss_pred CCC
Q 025362 248 QFH 250 (254)
Q Consensus 248 ~~~ 250 (254)
..|
T Consensus 132 ~~~ 134 (698)
T KOG0978|consen 132 NGN 134 (698)
T ss_pred Ccc
Confidence 644
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=51.65 E-value=2.6e+02 Score=29.19 Aligned_cols=39 Identities=31% Similarity=0.416 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
...+.|+..+|.......+.++.|-..|--|.-+|..+-
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 355678888888888889999999999988888887664
No 107
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.30 E-value=82 Score=29.37 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=4.6
Q ss_pred HHhhhHHHHHHH
Q 025362 225 LELRNYALKLHL 236 (254)
Q Consensus 225 LE~~NYaL~~HL 236 (254)
|+..|--|+--|
T Consensus 96 l~~EN~rLr~LL 107 (283)
T TIGR00219 96 LKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHh
Confidence 333343343333
No 108
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=51.01 E-value=3.1e+02 Score=28.60 Aligned_cols=16 Identities=44% Similarity=0.459 Sum_probs=7.5
Q ss_pred HHHhhhHHHHHHHHHH
Q 025362 224 NLELRNYALKLHLQRA 239 (254)
Q Consensus 224 ~LE~~NYaL~~HL~qA 239 (254)
+++..|-.|.-.|+.+
T Consensus 280 ~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 280 QLQQENEALKEQLRSA 295 (546)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444455444444
No 109
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.48 E-value=1.7e+02 Score=25.44 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVE-LLKLVISQYQDQARNLE 226 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~-~Lkql~~qyqEqir~LE 226 (254)
+..|...|..+++.|..+|.-|..-+.-.+....-++++..++. .++.+...|.+-|+++-
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788889999999999999998555544444444444444432 55667777777777653
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.34 E-value=1.2e+02 Score=28.96 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 168 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 168 ~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.|...+|++|..+..++...++=+.....+.+ ..+..+...+....+++++|+.+|.
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~---~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQ---ELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777776665555553 3445555666677788888887765
No 111
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=50.31 E-value=2.9e+02 Score=28.26 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 140 LDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+.+.+.|=.++.+.+++........ +..++++++.|..+....++
T Consensus 80 l~~~~~~l~~~~~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~ 124 (779)
T PRK11091 80 LEESRQRLSRLVAKLEEMRERDLEL-----NVQLKDNIAQLNQEIAEREK 124 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554443222 22344444455444433333
No 112
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=50.08 E-value=28 Score=35.22 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 171 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 171 ~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
..-|.++..... |.|+-+-+.+|- ||..++-.+. .++..||.||+++|.+-|+
T Consensus 350 V~~k~e~~~k~s-Nvi~eKt~Lrqk-rq~A~e~~n~------k~~~ey~~qL~~~E~~~~~ 402 (521)
T COG5296 350 VACKDEVHPKRS-NVIHEKTELRQK-RQRAIELKNK------KAAMEYQRQLEEIEDNEGA 402 (521)
T ss_pred HHHHHhcCccch-hHHHHHHHHHHH-HHHHHHccCH------HHHHHHHHHHHHHHHhhhc
Confidence 334555555444 888888898987 7766665554 4788999999999999876
No 113
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.79 E-value=1.9e+02 Score=25.73 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
..+|...|+.++....++...|+.+-.....-.+++.+...|-..|.|-+.+-+..-..|
T Consensus 67 a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 67 AEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777776666666666555555555555555444444333
No 114
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.70 E-value=84 Score=32.08 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 207 EVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
|++.+++....++++|+.||..|-.|+-.+
T Consensus 91 Elq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 91 ELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555554444
No 115
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=49.34 E-value=24 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=29.4
Q ss_pred cCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 50 MFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 50 lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
.-=+|-.+--++.||++|=|++.|++.+.+|.-
T Consensus 21 ~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 21 AQTGMNAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 346788899999999999999999999999874
No 116
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=48.70 E-value=56 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
+.+||..|+.+++.|.+|+.-||+.+
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 117
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.59 E-value=77 Score=25.87 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
.....++..||+.+.+--|.=.+|..-|.-|+-+|.+..+
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788888888888888888899999999999887755
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.59 E-value=2e+02 Score=27.32 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHER-HLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR-~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
+..-...+|+.++.+++||.-|..- +++ +.+|++-+.++..|..-.++..|..+.|+-.-|-|.-.+-
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~e----leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKE----LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 5556677888888888888755432 333 3478888888888888888888888888888887776543
No 119
>PRK11637 AmiB activator; Provisional
Probab=48.34 E-value=2.6e+02 Score=27.10 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~L 225 (254)
+++..++.-+.+.+++|..+
T Consensus 103 ~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 103 KQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.86 E-value=2.9e+02 Score=29.44 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 185 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 185 ~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.-++|=+..-+..-++++.+..++..|+..+..-.+.+..||.
T Consensus 460 ~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 460 ERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555566666666666666555555555555554
No 121
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=47.54 E-value=23 Score=29.31 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 025362 166 KELEHASLKEHLQSLLND 183 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~e 183 (254)
+++||-+||.+++.|+.-
T Consensus 84 LeEENNlLklKievLLDM 101 (108)
T cd07429 84 LEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666543
No 122
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=47.54 E-value=1.3e+02 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHhh
Q 025362 140 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLND 183 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~aa-------~~~E~~~lKeql~~l~~e 183 (254)
++|.+.||..-+.-+|+.+-+|+..+ .++|...|...|..|..+
T Consensus 74 ~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~ 124 (132)
T PF05597_consen 74 VDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQ 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888877663 444555555555555443
No 123
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.52 E-value=2.4e+02 Score=29.97 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 203 QKEKEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 203 ~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
++..|+.+|+.-+-+-+|+++.||...-.|+++
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999988777665
No 124
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.38 E-value=55 Score=28.45 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
+++.+..+.++|-.+..++.-|+.-...+..+..+++ .++..|+.-+.+..+.|+-.+..|
T Consensus 86 l~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~---~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 86 LYRSKGELAQQLVELNDELQELEKELSEKERRLAELE---AELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp ----------------------------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443332 334444444444444444444443
No 125
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.06 E-value=1.5e+02 Score=27.13 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 025362 211 LKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 211 Lkql~~qyqEqir~LE~~NYaL 232 (254)
.+..+++++.++.++...+-+.
T Consensus 187 ~~~~~~~~~~~l~~l~~~~~~~ 208 (301)
T PF14362_consen 187 KRAQLDAAQAELDTLQAQIDAA 208 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444444433
No 126
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.99 E-value=2.6e+02 Score=26.54 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
|.+|..-+-..+..|-+||..+|+-+---+. ..-++..|...+.+.+..++.|+..||-
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~---~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNK---ALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999987665553 4456777888888888888888888874
No 127
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=46.87 E-value=53 Score=35.65 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 186 ILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 186 iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
-+.|++.||-++.+ ..++.+.+...-...|+..=|+++.||.+---|..||++|...
T Consensus 192 ~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~ 249 (966)
T KOG4286|consen 192 NVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVI 249 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 46799999999998 5677888888888899999999999999999999999999863
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=46.65 E-value=2.6e+02 Score=27.08 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhh-h----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh-------HHHH
Q 025362 137 AADLDDARGRAARILEVFERSIITNSKA-S----KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE-------QEQK 204 (254)
Q Consensus 137 Asd~dDAr~RAsRvLEafEksi~~r~~a-a----~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e-------~e~~ 204 (254)
+..+++|....+.+=+.+.+-......- . +.-+.+-|+..+..+.-||-=|..-+.+=++.+.. ++++
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677776666666555444333 1 44445555555556666665555554443333322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 205 EKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
-.|+.. ++...||++|+|-.+
T Consensus 285 Y~E~~~---mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 285 YAECMA---MLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHH---HHHHHHHHHHHhhCC
Confidence 333333 566677888776543
No 129
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.23 E-value=37 Score=25.52 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHH-------HHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQ-------SLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~-------~l~~eN~iLKR 189 (254)
..+|...||+++. .|..||.+||.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555554 44455555553
No 130
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=45.06 E-value=43 Score=26.65 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
.+++.++|....++.+.||+.+++.|+..---|
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888899999999999999998664433
No 131
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.21 E-value=1.3e+02 Score=29.08 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 219 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyq 219 (254)
|-+.|-.+++.|.+.|.=||+=+ +.+.+|++-|||++...+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa----------~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQA----------SELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 44455567777777777666532 234467777777765543
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=44.09 E-value=3.9e+02 Score=30.20 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 166 KELEHASLKEHLQSLLND-NQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~e-N~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
+++|++.+.+++..|-.| |.+...+..+|+++.. ...+..+|+.-+.+|+++|+.|..+
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~----i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEH----IEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444555444433 4455556667765532 2356678888999999999999864
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.84 E-value=3.7e+02 Score=28.70 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
..++...+.+++++|..||..||+-+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ 445 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKREL 445 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666543
No 134
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=43.52 E-value=1.1e+02 Score=27.58 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQD 220 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqE 220 (254)
+..++..|+.|--.|.++|+-.|.|+ .+.-+-.-|.+.+|||.
T Consensus 82 meK~~~~LL~EELkLqe~~A~e~~~~-----~~~~lleAkk~asqYQk 124 (176)
T PF06364_consen 82 MEKNFVDLLSEELKLQEAVANENQRR-----ADMALLEAKKMASQYQK 124 (176)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34456677788888999999888766 33445677889999994
No 135
>PF15463 ECM11: Extracellular mutant protein 11
Probab=43.48 E-value=88 Score=26.11 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=42.9
Q ss_pred ChhhhHHH---HHHHHh-cCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Q 025362 122 DGSKWVDL---FVHEMM-SAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLN 182 (254)
Q Consensus 122 ~g~eWVel---~V~EM~-~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~ 182 (254)
+=.+|.+. |+.+.. -..-|.++|.-=.++-+.||+.|..|+.+ +..+-..|.+.|+.+..
T Consensus 70 s~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~ea-v~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 70 SFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEA-VRAQGEQLDRKLEKMKE 133 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45566654 554443 33467888888889999999999999999 66666667777766543
No 136
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=43.47 E-value=3.1e+02 Score=26.42 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025362 206 KEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~ 227 (254)
++++++.++-..|++|++.|+.
T Consensus 83 ~r~~~~~~i~~~~~~q~~~l~~ 104 (332)
T TIGR01541 83 ERLDARLQIDRTFRKQQRDLNK 104 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444
No 137
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.75 E-value=2.7e+02 Score=25.47 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQIL----KKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iL----KRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
|+..||.++..+-.+.... ...-...+.+..+.+....|++..+.-...-+++|-.||..+-.|+--+..+
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 6666777665544333322 2223345677888999999999999999999999999999999888877765
No 138
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=42.32 E-value=3.8e+02 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHhhhHHHHHHHHHHhccCCCCCCC
Q 025362 225 LELRNYALKLHLQRAQESSSIPRQF 249 (254)
Q Consensus 225 LE~~NYaL~~HL~qA~~~~~~~g~~ 249 (254)
+.++|-||.--.+ |....++|+++
T Consensus 379 ~~v~~saLdtCik-aKsq~~~p~~r 402 (442)
T PF06637_consen 379 LAVKTSALDTCIK-AKSQPMTPGPR 402 (442)
T ss_pred HHhhhhHHHHHHH-hccCCCCCCCC
Confidence 4678888888877 55566666644
No 139
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=41.54 E-value=2.7e+02 Score=26.94 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHHHHHh--hhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 025362 153 VFERSIIT--NSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 202 (254)
Q Consensus 153 afEksi~~--r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e 202 (254)
-+||+|.. ||.+.|....+|||+++..-++. +|++|+--|..+.|-|
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~---ik~~F~~l~~cL~dRE 202 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKK---IKQTFAELQSCLMDRE 202 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 46888865 67667889999999999877653 6888887777775554
No 140
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.16 E-value=1.1e+02 Score=22.70 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
.-+.+|.+.|.+-|.+|.+|+...=.|.-.|+...
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556777888888889888888888888888766
No 141
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.07 E-value=2.6e+02 Score=24.81 Aligned_cols=28 Identities=32% Similarity=0.222 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
.|.+.|+.-+.+.|++++.||..|-.|.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554443
No 142
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=40.89 E-value=60 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQ 194 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQ 194 (254)
.||+|++.|..+-++|..+|.++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y 25 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666555543
No 143
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.83 E-value=4.1e+02 Score=27.07 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=8.0
Q ss_pred chHHHHHHHHHHH
Q 025362 140 LDDARGRAARILE 152 (254)
Q Consensus 140 ~dDAr~RAsRvLE 152 (254)
+.+|+..|..+++
T Consensus 27 l~~Ae~eAe~i~k 39 (514)
T TIGR03319 27 LGSAEELAKRIIE 39 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777766664
No 144
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=40.32 E-value=1.9e+02 Score=29.76 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 025362 207 EVELLKLVISQYQD 220 (254)
Q Consensus 207 E~~~Lkql~~qyqE 220 (254)
|--.|.|++.||||
T Consensus 144 ek~~lEq~leqeqe 157 (552)
T KOG2129|consen 144 EKLPLEQLLEQEQE 157 (552)
T ss_pred hhccHHHHHHHHHH
Confidence 33346689999994
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.24 E-value=5.1e+02 Score=28.92 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 204 KEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
..+++..+...+.+.+++.......--.+...+++
T Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 501 (1201)
T PF12128_consen 467 EKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQE 501 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555444444444444333
No 146
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=22 Score=34.61 Aligned_cols=41 Identities=15% Similarity=-0.018 Sum_probs=30.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
.++|.+||.-= +-.--...++|++||+|++-|-+-|+.=..
T Consensus 47 ~allk~LR~kT-gas~~ncKkALee~~gDl~~A~~~L~k~aq 87 (340)
T KOG1071|consen 47 KALLKKLREKT-GASMVNCKKALEECGGDLVLAEEWLHKKAQ 87 (340)
T ss_pred HHHHHHHHHHc-CCcHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46677887542 222335899999999999999999987533
No 147
>PF14645 Chibby: Chibby family
Probab=39.41 E-value=35 Score=28.18 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSI 193 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~I 193 (254)
...|+..++++...|..||+.||-=+-|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999998854443
No 148
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=39.27 E-value=1.9e+02 Score=22.75 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 179 SLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 179 ~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
.|+++|.-||+=+ +.++.|.+..+.=+..|+..+-.|-+==+.||..+-.+..+
T Consensus 2 ~Li~qNk~L~~kL---~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 2 ELIKQNKELKKKL---NDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777654 34455666666666666666677777777788888777774
No 149
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.02 E-value=3.8e+02 Score=26.24 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=43.5
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h
Q 025362 121 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA--SKELEHASLKEHLQSLLNDNQILKKAVSIQHE-R 197 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~a--a~~~E~~~lKeql~~l~~eN~iLKRAv~IQhe-R 197 (254)
..+.+|.+.| .++.+=.-.+.+......-+...++-+..-... .++.+...++..+..+..+. ....+ =
T Consensus 147 ~~~~er~~il-~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~-------~~~i~~l 218 (562)
T PHA02562 147 LSAPARRKLV-EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN-------GENIARK 218 (562)
T ss_pred CChHhHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHH
Confidence 4567785554 446664444444444444444444433332222 13333333333333333322 22111 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 198 HLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 198 ~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
.++++....+..+++..+.+++++|-.|
T Consensus 219 ~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 219 QNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355555555555555555555555555
No 150
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.98 E-value=3.8e+02 Score=26.12 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLN-----DNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 221 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEq 221 (254)
+..|+..+.+|++.++. |..+++|-+.+-|+.. ..+.+|++++...++.
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK-------~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKK-------AKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHhhcc
Confidence 34444555556655543 5567788888887655 4444555555555543
No 151
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.33 E-value=2.8e+02 Score=24.43 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 025362 123 GSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 202 (254)
Q Consensus 123 g~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e 202 (254)
--.+++.+..++ ++.+.+-..+-+.++.+-..|... .|...+-++++.|..++.-|+.=+. -.++.+
T Consensus 67 ~~~~~~~l~~~~------~~~~~~i~~l~~~i~~~~~~r~~~---~eR~~~l~~l~~l~~~~~~l~~el~----~~~~~D 133 (188)
T PF03962_consen 67 RQNKLEKLQKEI------EELEKKIEELEEKIEEAKKGREES---EEREELLEELEELKKELKELKKELE----KYSEND 133 (188)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcC
Confidence 345566666553 456666666666666664443222 3444555566666666666665444 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 203 QKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 203 ~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
-..++++++.+..+.+.+-+---|.|+|.-|++.
T Consensus 134 --p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 134 --PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1456677777888888888888899999999987
No 152
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.09 E-value=2.4e+02 Score=30.20 Aligned_cols=73 Identities=26% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 025362 129 LFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEV 208 (254)
Q Consensus 129 l~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~ 208 (254)
..|+||. |-+++--+|..|--+... .++-|.+.+...++.+ +++...+++|+
T Consensus 79 r~~~e~~--------RI~~sVs~EL~ele~krq---el~seI~~~n~kiEel-----------------k~~i~~~q~eL 130 (907)
T KOG2264|consen 79 RILREQK--------RILASVSLELTELEVKRQ---ELNSEIEEINTKIEEL-----------------KRLIPQKQLEL 130 (907)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH-----------------HHHHHHhHHHH
Confidence 4566663 566666666665433211 2555555554444443 33445678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 025362 209 ELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 209 ~~Lkql~~qyqEqir~LE~~N 229 (254)
.+||-.++|.|-|.+.|-++|
T Consensus 131 ~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 131 SALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHhHHHHHHHHHHHHHhhc
Confidence 999999999999999886655
No 153
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.59 E-value=8.1e+02 Score=29.57 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=60.9
Q ss_pred CChhhhHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025362 121 TDGSKWVDLFVHEMMS-AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHER 197 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~-Asd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR 197 (254)
+.-.+|--.+..+... ...++++|.+...=|+..+..+...... + +.+=...|...++.+.-+..-...+++-....
T Consensus 1357 ~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k 1436 (1930)
T KOG0161|consen 1357 AELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKK 1436 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999988888876 8899999999999999999998876555 3 44444555666666666666666666666665
Q ss_pred hhhHHH
Q 025362 198 HLEQEQ 203 (254)
Q Consensus 198 ~~e~e~ 203 (254)
++-++.
T Consensus 1437 ~k~f~k 1442 (1930)
T KOG0161|consen 1437 QKRFEK 1442 (1930)
T ss_pred HHHHHH
Confidence 555553
No 154
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.32 E-value=5.5e+02 Score=27.51 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=6.4
Q ss_pred HHHHHHHHhhHHHHHHH
Q 025362 174 KEHLQSLLNDNQILKKA 190 (254)
Q Consensus 174 Keql~~l~~eN~iLKRA 190 (254)
+++++.+.+|..-+|+.
T Consensus 531 ~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKE 547 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 155
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=37.01 E-value=14 Score=26.29 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhhhhcc
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (254)
+|.++--.+.|+++|=|++.|+..+..|.-.
T Consensus 12 gmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 12 GMNLEWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp SS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 6777888999999999999999999987643
No 156
>PRK00846 hypothetical protein; Provisional
Probab=36.66 E-value=2e+02 Score=22.38 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 025362 207 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQESS 243 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 243 (254)
=+..|.+.|.+.|.+|..|...--.|.-+|+.++.++
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456666888888888888888778888999887554
No 157
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=36.61 E-value=4.1e+02 Score=25.81 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
+.+.-...+..+++|..|-...|..+.+==+|..+......-+++||.-...+.+||.-||..-|==.+.-.+|
T Consensus 255 ~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrA 328 (336)
T PF05055_consen 255 LIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRA 328 (336)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888889999999999999988887777766555556689999999999999999999988766655544
No 158
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.45 E-value=1.5e+02 Score=24.44 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
....+++..||+.+.+--|.=.+|+.-|--|+-+|.+.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557777888888888888888888888888888875
No 159
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.36 E-value=3.9e+02 Score=25.58 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 025362 144 RGRAARILEVFERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQY 218 (254)
Q Consensus 144 r~RAsRvLEafEksi~~r~~a-----a~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qy 218 (254)
|..=+-|=|-|-|+++..|-= ++.-+...||..|+.+.....-|+|=+. +..++++-..+....|+--++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677778888998876644 1666777777777777777777766652 33444444444444555556666
Q ss_pred HHHHHHHH
Q 025362 219 QDQARNLE 226 (254)
Q Consensus 219 qEqir~LE 226 (254)
+++|+..+
T Consensus 160 re~L~~rd 167 (302)
T PF09738_consen 160 REQLKQRD 167 (302)
T ss_pred HHHHHHHH
Confidence 66666554
No 160
>PRK04406 hypothetical protein; Provisional
Probab=36.30 E-value=2e+02 Score=22.06 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
.-+..|.+.|.+-|.+|..|+..-=.|.-+|+.+..+
T Consensus 25 ~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 25 QTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455666688888888888877766666677766543
No 161
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=36.10 E-value=56 Score=30.53 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=39.8
Q ss_pred ChhhhHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHh
Q 025362 122 DGSKWVDLFVHEMMSA-------ADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLN 182 (254)
Q Consensus 122 ~g~eWVel~V~EM~~A-------sd~dDAr~RAsRvLEafEksi~~r~~a-a~~~E~~~lKeql~~l~~ 182 (254)
.|.=--+..++-|-++ .+..|=|+ |++++|++.|.+.-.+.. -+.||-+++++|++.+.+
T Consensus 158 ~g~ll~e~~~r~i~a~~ll~et~~~~PDP~A-Aa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~e 225 (244)
T COG1938 158 SGALLNECLKRGIPALVLLAETFGDRPDPRA-AARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAE 225 (244)
T ss_pred cHHHHHHHHHcCCCeEEEeccccCCCCChHH-HHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554432 34446665 789999999998887777 388888888777766554
No 162
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=35.83 E-value=3.5e+02 Score=26.85 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 025362 166 KELEHASLKEHLQSLLND 183 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~e 183 (254)
.+.++..|+.++..+..+
T Consensus 65 ~~~~~~~L~~ql~~~~~~ 82 (390)
T PRK10920 65 QTATNDALANQLTALQKA 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777766555
No 163
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.77 E-value=2e+02 Score=22.01 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025362 205 EKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.-++..|++-+.+|+..|+.++.
T Consensus 49 Kve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 49 KVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666655554
No 164
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.39 E-value=1.1e+02 Score=28.75 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 025362 202 EQKEKEVELLKLVI 215 (254)
Q Consensus 202 e~~~~E~~~Lkql~ 215 (254)
+...+|.++||.++
T Consensus 93 ~~l~~EN~~Lr~lL 106 (284)
T COG1792 93 ESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444443
No 165
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.27 E-value=3.1e+02 Score=26.87 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 167 ELEHASLKEHLQSLLNDNQILKKAVSIQHERH---LEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 167 ~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~---~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
.++...|++++..+..+-.-|++.+....... +.-.++...++.+++...++.++++.|+..-..|.--|+..
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555455554432222111 11123445555566666666666666666666665555554
No 166
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.26 E-value=1.7e+02 Score=20.96 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 204 KEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
...++..|..-..++.+++..|+..+..|.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555443
No 167
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.25 E-value=76 Score=24.84 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 203 QKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 203 ~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
+-.+.+++|-.....-+|+|.|||.
T Consensus 39 ~d~~~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 39 EEQQRLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999996
No 168
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.24 E-value=3.3e+02 Score=26.55 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Q 025362 126 WVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKE 205 (254)
Q Consensus 126 WVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~ 205 (254)
|++.|+.+. ..--+..+....+-|++-+.. ++++.....+.+.....+|++. -..-+......+.+.+
T Consensus 143 l~~~yi~~~-----~~~~~~~~~~~~~fl~~ql~~-----~~~~L~~ae~~l~~f~~~~~~~--~~~~~~~~~~~l~~l~ 210 (498)
T TIGR03007 143 LLTIFVEET-----LGSKRQDSDSAQRFIDEQIKT-----YEKKLEAAENRLKAFKQENGGI--LPDQEGDYYSEISEAQ 210 (498)
T ss_pred HHHHHHHhh-----cccchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCccc--CccchhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 025362 206 KEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
+++..++..+.+.+.++++|+..
T Consensus 211 ~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 211 EELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 169
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.12 E-value=4.7e+02 Score=27.44 Aligned_cols=70 Identities=26% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHHHHHHHH-------HHHhhHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 170 HASLKEHLQ-------SLLNDNQILKKAVSIQHERHLEQEQKEK----EVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 170 ~~~lKeql~-------~l~~eN~iLKRAv~IQheR~~e~e~~~~----E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
|..||+||. .|.++|.-|+-+.-.-....+++..+-. ++..+|..|.---+-+..|...+-.+.-||+|
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqq 241 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQ 241 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555554 4566776666665444334444433222 22223333322223345555555555556665
Q ss_pred H
Q 025362 239 A 239 (254)
Q Consensus 239 A 239 (254)
.
T Consensus 242 y 242 (617)
T PF15070_consen 242 Y 242 (617)
T ss_pred H
Confidence 4
No 170
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=34.98 E-value=76 Score=26.79 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHH-------HHHhhHHHHHHH
Q 025362 166 KELEHASLKEHLQ-------SLLNDNQILKKA 190 (254)
Q Consensus 166 ~~~E~~~lKeql~-------~l~~eN~iLKRA 190 (254)
..+|...||+|+. .|-+||.+||+-
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666554 455566666653
No 171
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.83 E-value=2.9e+02 Score=25.29 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE--QKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e--~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
++.||..|+.-...|-.+.+==|+ |+-.+.|.--|- .+.+||..-.|.+.+.+.....|-..|..|+
T Consensus 67 LqedNqELRdLCCFLDddRqKgrk-larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 67 LQEDNQELRDLCCFLDDDRQKGRK-LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHHHHHHHHHHcccchhHHHhHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677888887777777776666666 777777777665 3668888888888888888888888887765
No 172
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=34.63 E-value=30 Score=30.10 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL----EQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~----e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
+..|...|+.++.+|..||.-|.--.+--..+++ +....-.++.+|+-++..|++-+....
T Consensus 20 l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~ 84 (181)
T PF09311_consen 20 LEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESR 84 (181)
T ss_dssp HHHCCHHHHT-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccc
Confidence 7778899999999999999999877665554542 222344778888888888887655443
No 173
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.57 E-value=2.9e+02 Score=23.48 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQH--ERHLEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQh--eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
+..+...+|.+...+.++|.-|+.--.+=+ .=+.||+....++..|++-|..++..+..||..
T Consensus 110 ~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 110 LREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444433222211 123478888889999999999999888888754
No 174
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.51 E-value=2.9e+02 Score=23.47 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAV-----SIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv-----~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
++-||..|.++++.=-.|=.-||+.. .+.|.|-+-. ....+...+++-+...++.+..+...-|.+....
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~-~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH-FLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888888876666655565544 3556665543 3456666777777777777777776666665543
No 175
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.39 E-value=60 Score=27.77 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 201 QEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
.+..+++++.|+.....|.+-+.+|+
T Consensus 19 ie~L~~si~~L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 19 VQKLQEELSSIDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777777
No 176
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.39 E-value=3.1e+02 Score=24.53 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025362 210 LLKLVISQYQDQARNLE 226 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE 226 (254)
+++..+.++++.|...+
T Consensus 157 e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334555555555444
No 177
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=34.08 E-value=2.6e+02 Score=25.61 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=30.1
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhhhhh--h-------hhHHHHHHHHHHHHHHh
Q 025362 135 MSAADLDDARGRAARILEVFERSIITNSKA--S-------KELEHASLKEHLQSLLN 182 (254)
Q Consensus 135 ~~Asd~dDAr~RAsRvLEafEksi~~r~~a--a-------~~~E~~~lKeql~~l~~ 182 (254)
..++.+.|||.|=.-|.+.=|++...--.+ + +..+...|+++.+++..
T Consensus 43 ~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~ 99 (214)
T PRK11166 43 EAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFA 99 (214)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc
Confidence 467888999999777777666665432222 0 45556666666665544
No 178
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=34.01 E-value=4.5e+02 Score=25.57 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025362 123 GSKWVDLFVHEMMS----AADLDDARGRAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHER 197 (254)
Q Consensus 123 g~eWVel~V~EM~~----Asd~dDAr~RAsRvLEafEksi~~r~~a-a~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR 197 (254)
+..=+|.|+.++.. -.+++++|+==..-++++|++..+..+. ++. +-.+.++.--..||+++..+=+.
T Consensus 206 ~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efa-------k~~G~lvna~m~lr~~~qe~~e~ 278 (320)
T TIGR01834 206 GYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENA-------KVHGKFINALMRLRIQQQEIVEA 278 (320)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555553 2455666655555666666666554333 111 11222233333344433333222
Q ss_pred h---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 198 H---------LEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 198 ~---------~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
. .|.++..+++.+||.-+..-..+|++||.+
T Consensus 279 ~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 279 LLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 244455555555555555555556665543
No 179
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=33.93 E-value=3.7e+02 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 025362 145 GRAARILEVFERSIITNS 162 (254)
Q Consensus 145 ~RAsRvLEafEksi~~r~ 162 (254)
+||-.|-..|-+-...=+
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA 101 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLA 101 (192)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456666666655444433
No 180
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.87 E-value=3.3e+02 Score=24.02 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHH-----HHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHh
Q 025362 127 VDLFVH-----EMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVS----IQHER 197 (254)
Q Consensus 127 Vel~V~-----EM~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~----IQheR 197 (254)
|+-.+. .......+.-...+...=++.+...|.. ..++....|+++..+..++.-.+..+. ....+
T Consensus 43 i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~-----~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~ 117 (302)
T PF10186_consen 43 IEEILESDSNGQLLEIQQLKREIEELRERLERLRERIER-----LRKRIEQKRERLEELRESLEQRRSRLSASQDLVESR 117 (302)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 198 HLEQEQKEKEVELLKLVISQYQDQARN 224 (254)
Q Consensus 198 ~~e~e~~~~E~~~Lkql~~qyqEqir~ 224 (254)
.+..++...++...++.+.+-+.++..
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 118 QEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 181
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=33.75 E-value=3.7e+02 Score=24.48 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 194 QHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 194 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
||+=.+|-.....|.+..+..+.+-|.||+.||..
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555556666666666543
No 182
>PRK04325 hypothetical protein; Provisional
Probab=33.71 E-value=2.1e+02 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
.-+..|...|.+-|.+|.+|+..-=.|.-.|+....
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677778888888888888877777667776553
No 183
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.42 E-value=1.4e+02 Score=27.63 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 190 AVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 190 Av~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
.|.-|-.|.+ -..+..+|+.++++.+...+.+|.+|...|--|---.|=-|
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666655 33455678888888888889999999988877754444333
No 184
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.69 E-value=1.5e+02 Score=28.61 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVS-IQHER 197 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~-IQheR 197 (254)
+.++|..||+|+..|-+|..-||.+|. .+|.|
T Consensus 260 Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 260 LEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999984 44444
No 185
>PRK00106 hypothetical protein; Provisional
Probab=32.37 E-value=5.9e+02 Score=26.39 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHH
Q 025362 141 DDARGRAARILE 152 (254)
Q Consensus 141 dDAr~RAsRvLE 152 (254)
.+|++.|..+++
T Consensus 49 eeAe~eAe~I~k 60 (535)
T PRK00106 49 GKAERDAEHIKK 60 (535)
T ss_pred HHHHHHHHHHHH
Confidence 467777766663
No 186
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.33 E-value=5e+02 Score=25.84 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=6.6
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 025362 220 DQARNLELRNYALKLHLQ 237 (254)
Q Consensus 220 Eqir~LE~~NYaL~~HL~ 237 (254)
.+++.|+..--.|...|.
T Consensus 152 ~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 152 RRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 187
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.32 E-value=2.2e+02 Score=21.48 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
.-+..|...|.+-|.+|.+|+..-=.|.-.|+....+
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455667788888888888887776777777766543
No 188
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=32.24 E-value=91 Score=24.12 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 203 QKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 203 ~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
+-.+.+++|-+....-+|+|.+||.
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888899999985
No 189
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.17 E-value=8.8e+02 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH
Q 025362 171 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQE 202 (254)
Q Consensus 171 ~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e 202 (254)
..+.+++..+..+..-+..++..+..+...|+
T Consensus 386 eelEeeLeeLqeqLaelqqel~elQ~el~q~q 417 (1486)
T PRK04863 386 EAAEEEVDELKSQLADYQQALDVQQTRAIQYQ 417 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334433333334444444444444443
No 190
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=32.16 E-value=3.6e+02 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025362 201 QEQKEKEVELLKLVISQYQDQA 222 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqi 222 (254)
..+.++|..+|+..+..||--+
T Consensus 72 i~~Lq~EN~eL~~~leEhq~al 93 (181)
T PF05769_consen 72 IRQLQQENRELRQSLEEHQSAL 93 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666433
No 191
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.00 E-value=1.1e+02 Score=26.41 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 199 LEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 199 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
+-|++..+||..|-+--..-.|++-.||+..|++-
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677778888877777778889999999999984
No 192
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.61 E-value=2.4e+02 Score=24.66 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=38.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 191 VSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 191 v~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
|.|=-.=.+||+...+|+.++|..+.++-+++-.||...-.-+..|...-
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433344588888899999999999999999999998888888776543
No 193
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.34 E-value=3e+02 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 205 EKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
.+.+..|..--..+..+|.+|+..++.|+-.+.+...
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444455555555666666666666655443
No 194
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.24 E-value=8.4e+02 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 025362 178 QSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLK 212 (254)
Q Consensus 178 ~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lk 212 (254)
++-..+|..+.+-+..||.+..++++..+..+.|+
T Consensus 460 ~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknln 494 (1195)
T KOG4643|consen 460 SRQSLENEELDQLLSLQDQLEAETEELLNQIKNLN 494 (1195)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777777665443333333
No 195
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.13 E-value=3.3e+02 Score=26.65 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 202 EQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
....+++++|+..+.+.++++++.
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444443
No 196
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=31.09 E-value=95 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHH
Q 025362 207 EVELLKLVISQYQDQARNLELRNYALK-LHLQ 237 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE~~NYaL~-~HL~ 237 (254)
+|.+|-+.-.+-++++.+||...|.+- -+|.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556677777777777773 3455
No 197
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.05 E-value=4.3e+02 Score=24.41 Aligned_cols=24 Identities=17% Similarity=0.190 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
..++....+.+.+.+..+...|+.
T Consensus 202 ~ek~~~~~~~k~e~~e~e~~~l~e 225 (297)
T PF02841_consen 202 KEKEIEEEQAKAEAAEKEKEKLEE 225 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666554
No 198
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.98 E-value=1e+02 Score=24.22 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 192 SIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 192 ~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
+=+..|+++++.+-.|... .++=.=||.+-.+.--|..-|+....
T Consensus 18 ae~Q~rlK~Le~qk~E~EN-----~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 18 AELQARLKELEAQKTEAEN-----LEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3344466666665555544 23445567777777888888887653
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.95 E-value=6.2e+02 Score=26.26 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=8.0
Q ss_pred HHhhcchhHHHHHHHHhhh
Q 025362 62 VLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 62 aLe~cgndlDaAIksL~~L 80 (254)
=|++-...++.|-+.|...
T Consensus 202 ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 200
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.74 E-value=2.6e+02 Score=21.76 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 025362 214 VISQYQDQARNLE 226 (254)
Q Consensus 214 l~~qyqEqir~LE 226 (254)
+-.+|++.|.+|-
T Consensus 58 mK~~YEeEI~rLr 70 (79)
T PF08581_consen 58 MKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4457777777664
No 201
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=30.61 E-value=3.6e+02 Score=27.54 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQHERHL--EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQheR~~--e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
.|+++++-+.+|+..-|+-+.|--+-.+ ++++...|+++|+.-=.+--.|++.||.++|-|---|+.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888887777555444 456677777777766666667788888888877665553
No 202
>PRK02119 hypothetical protein; Provisional
Probab=30.58 E-value=2.4e+02 Score=21.37 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
.-+..|...|.+=|.+|..|+..--.|.-+|+....+
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455666688888888888887777777777765533
No 203
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.51 E-value=82 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025362 210 LLKLVISQYQDQARNLEL 227 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~ 227 (254)
.|||.|.--|+||+.|+.
T Consensus 3 aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666777776664
No 204
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.30 E-value=1.3e+02 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025362 187 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 222 (254)
Q Consensus 187 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi 222 (254)
+-|-+.-|....++++ ++++..++++..|.+++
T Consensus 50 i~~s~eeq~~~i~~Le---~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELE---EQIRKKREVLQKFKERV 82 (83)
T ss_pred ccCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 4444444444443333 34445555666666543
No 205
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=30.18 E-value=38 Score=32.50 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.7
Q ss_pred HHHHHhhcchhHHHHHHHHhhhhcccc
Q 025362 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (254)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (254)
-.+||++++.|||.||+-|..--+..+
T Consensus 23 CKkAL~E~~Gd~EkAie~LR~kG~akA 49 (296)
T COG0264 23 CKKALEEANGDIEKAIEWLREKGIAKA 49 (296)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhchHhh
Confidence 579999999999999999998544443
No 206
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=30.10 E-value=1.3e+02 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
-=+||.-|.+.++.+-.|+..||
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588888888888888888887
No 207
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=29.78 E-value=3.3e+02 Score=25.55 Aligned_cols=50 Identities=28% Similarity=0.353 Sum_probs=35.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 025362 175 EHLQSLLNDNQILKKAVSIQHERHLEQEQKE--KEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 175 eql~~l~~eN~iLKRAv~IQheR~~e~e~~~--~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.+|..|+++..-+|+++..||....+.=.+. .||. .+-.+|++-.+..|.
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eve---K~Kk~Y~~~c~~~e~ 149 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIE---KLKSQYRSLAKDSAQ 149 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 5888999999999999999998887433222 2344 455677776665553
No 208
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.74 E-value=4.2e+02 Score=23.91 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh--h-hhHHHHHHHHHHHHHHhh--------HHHHHHHHHHHH
Q 025362 127 VDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA--S-KELEHASLKEHLQSLLND--------NQILKKAVSIQH 195 (254)
Q Consensus 127 Vel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~a--a-~~~E~~~lKeql~~l~~e--------N~iLKRAv~IQh 195 (254)
++.+++||-.= |...=|.-|..-|...++-... +.. . .+.|+..|++.+...+.+ -..|.+|.
T Consensus 132 a~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~-v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~---- 205 (264)
T PF06008_consen 132 AQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSR-VQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQ---- 205 (264)
T ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHH-HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45566666544 4666666666666666654332 222 1 344444444443222222 11222221
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 196 ERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 196 eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
.-.++.+..+...+. .+..+++++..++..+.-.+.||..|.
T Consensus 206 ~~~~ea~~ln~~n~~---~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 206 NKTREAEDLNRANQK---NLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333332 566677777777777777777777764
No 209
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=29.60 E-value=5.4e+02 Score=25.08 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=72.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025362 138 ADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 215 (254)
Q Consensus 138 sd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 215 (254)
..++-|+++.......|++.+..-... + -.-....+.++++...+.-...++++.+...|.+.=-.-.-+|-+-+.-+
T Consensus 368 a~~~~A~a~~~~a~~~y~~t~~~a~~eV~~a~~~~~~~~~~~~~~~~~~~~a~~~~~la~~ry~~G~~~~l~vl~aq~~~ 447 (478)
T PRK11459 368 ANLDIAKAQSNLSIASYNKAVVDAVNDVARAASQVETLAEKNQHQQQIERDALRVVGLAQARFNAGIIAGSRVSEAKIPA 447 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 345567777777888888888886666 2 33345567777777777778888888888888863333335555556666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 216 SQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 216 ~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
-+.+.++-+++.+...-.+.|-+|-
T Consensus 448 l~~~~~~~~~~~~~~~~~v~L~~AL 472 (478)
T PRK11459 448 LRERANGLLLQGQWLDASIQLTSAL 472 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777777777777777777775
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.57 E-value=3.8e+02 Score=24.63 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=4.1
Q ss_pred HHHHHHHhhh
Q 025362 153 VFERSIITNS 162 (254)
Q Consensus 153 afEksi~~r~ 162 (254)
.+|..+..+.
T Consensus 44 ~le~~~~~~~ 53 (263)
T PRK10803 44 QLERISNAHS 53 (263)
T ss_pred HHHHHHHhhh
Confidence 3444444443
No 211
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=29.35 E-value=1.4e+02 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025362 210 LLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~~N 229 (254)
.||...+-|-||+-+||.||
T Consensus 98 ~L~k~daf~Ke~larlEen~ 117 (192)
T KOG4083|consen 98 ELKKQDAFYKEQLARLEENS 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34446777777777777776
No 212
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=29.09 E-value=6.1e+02 Score=25.53 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh---hhh-hhh-----HHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 139 DLDDARGRAARILEVFERSIITN---SKA-SKE-----LEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 139 d~dDAr~RAsRvLEafEksi~~r---~~a-a~~-----~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
-+.|=|+||.|+|+.=||-|..= +.. .+. -|...||.+.+-+..|+..|.+-+
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999888751 222 222 246677888888888888888776
No 213
>PHA03162 hypothetical protein; Provisional
Probab=29.01 E-value=91 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCC
Q 025362 215 ISQYQDQARNLELRNYALKLHLQRAQESSSIPRQ 248 (254)
Q Consensus 215 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~ 248 (254)
+++.+.+|-+|+..|-+|.--|++......+||-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d 48 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGD 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 4566677788999999999999888776666664
No 214
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.78 E-value=2.2e+02 Score=21.04 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
+++..++.-+...++.++.||.++-++....
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i 36 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDI 36 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555443
No 215
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=28.70 E-value=3.1e+02 Score=24.98 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhhh-hhhH--HHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHH
Q 025362 149 RILEVFERSIITNSKA-SKEL--EHASLKEHLQSLLND--NQILKKAVSIQHERHLE-QEQKEKEVELLKLVISQYQDQ 221 (254)
Q Consensus 149 RvLEafEksi~~r~~a-a~~~--E~~~lKeql~~l~~e--N~iLKRAv~IQheR~~e-~e~~~~E~~~Lkql~~qyqEq 221 (254)
.+.+.||.++..+..- .+++ .+..+...+++++++ +.+-.-|.+|++.|.-. .....++++.+++.+..|+++
T Consensus 180 ~a~Dl~E~~~as~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 180 EAVDLFERALASHYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred HHHHHHHHHHhccccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3456777777766543 2222 133333445555443 23444588888766654 344667788888888887777
No 216
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.66 E-value=1.2e+02 Score=23.26 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 199 LEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 199 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
-|+|...+.+..+++-+..-+.+|..||.
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777777777777777777764
No 217
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.52 E-value=4.3e+02 Score=27.71 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=58.9
Q ss_pred HHHHhcCCCchHHHHHHH----HHHHHHHHHHHhhhhh-----h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 025362 131 VHEMMSAADLDDARGRAA----RILEVFERSIITNSKA-----S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE 200 (254)
Q Consensus 131 V~EM~~Asd~dDAr~RAs----RvLEafEksi~~r~~a-----a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e 200 (254)
+.+|..+.-.-|-|-||. -.++++++.+...... . ++.|.+.-.++++.|....--||.-|.-|---..+
T Consensus 290 a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~ 369 (622)
T COG5185 290 AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQ 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH
Confidence 344555555555555653 3566666666554333 1 66777777788888888888899988888777778
Q ss_pred HHHHHHHHHHHHHHHH
Q 025362 201 QEQKEKEVELLKLVIS 216 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~ 216 (254)
++.+++|..+|-.-++
T Consensus 370 fe~mn~Ere~L~reL~ 385 (622)
T COG5185 370 FELMNQEREKLTRELD 385 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8989988887765543
No 218
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.51 E-value=1.7e+02 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKA 190 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRA 190 (254)
+..+...||.+...+..+|..|+.-
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777777653
No 219
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.51 E-value=2.6e+02 Score=21.09 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH
Q 025362 167 ELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 167 ~~E~~~lKeql~~l~~eN~iLK 188 (254)
.-|+..|++++..+.+.+.+-.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777766666665543
No 220
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=28.45 E-value=2.9e+02 Score=29.70 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKL 234 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~ 234 (254)
|..-||+||..+-+|+..|-..+ ++.+..+.+-+..+...+++|..|-.+.-||.-
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L----------~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNL----------QESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66779999999999999998766 445566667777777778888887766666654
No 221
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.32 E-value=1e+02 Score=31.60 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh----------------H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLE----------------Q----EQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e----------------~----e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
-..+++.|+.||..|.++-+-|+..++-|+.---- . .--+.+++++||.++-.+=++..|
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 55688899999999999999999999888752210 0 001467888888888888888887
Q ss_pred Hhh
Q 025362 226 ELR 228 (254)
Q Consensus 226 E~~ 228 (254)
|..
T Consensus 103 ~da 105 (514)
T PF11336_consen 103 EDA 105 (514)
T ss_pred hhH
Confidence 754
No 222
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.23 E-value=73 Score=26.74 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
+..|...||++++.|+.||..|.
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 78889999999999999999874
No 223
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.23 E-value=9.3e+02 Score=27.38 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 025362 190 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 190 Av~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~H 235 (254)
|.+-=++..++|.....+....+..++.|++.|+....++-.++--
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k 317 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK 317 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555667888888889999999999999999999999998887743
No 224
>PLN03025 replication factor C subunit; Provisional
Probab=28.19 E-value=64 Score=29.71 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=38.7
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~v~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
|.||- .++|.+ +.++..|..++ -.++++.++.+++.||.|+-.||..|....
T Consensus 147 ~SRc~----~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~ 205 (319)
T PLN03025 147 QSRCA----IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH 205 (319)
T ss_pred HHhhh----cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55673 466665 55566666553 357899999999999999999999887444
No 225
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.88 E-value=2.3e+02 Score=20.24 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
-......|..++..|..+|..|+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777764
No 226
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=27.84 E-value=2.5e+02 Score=20.64 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=60.8
Q ss_pred CHHHHHHHHhhc-chhHHHHHHHHhhhhcccccccccccCCCccccCCCcchhhhhhccCCCCCccCCChhhhHHHHHHH
Q 025362 55 DPEVVKSVLGEH-DNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGSQMSEEEVRSAHTNFCGENITDGSKWVDLFVHE 133 (254)
Q Consensus 55 d~q~le~aLe~c-gndlDaAIksL~~L~L~sa~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~g~eWVel~V~E 133 (254)
.|..++++++.| .++++.+.+.+.+|-..+ -++.+.+.-|++.
T Consensus 4 ~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G------------------------------------~s~~~Il~~l~~~ 47 (89)
T PF08542_consen 4 PPEVIEEILESCLNGDFKEARKKLYELLVEG------------------------------------YSASDILKQLHEV 47 (89)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------------------------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------------------------------------CCHHHHHHHHHHH
Confidence 467788888888 668999999998876532 2467889999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 025362 134 MMSAADLDDARGRAARILEVFERSIITNSKASKELEHA 171 (254)
Q Consensus 134 M~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~ 171 (254)
+....=-++.|.+-.+.|--+|..+...+..-+|-++.
T Consensus 48 l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl~al 85 (89)
T PF08542_consen 48 LVESDIPDSQKAEILKILAEIEYRLSDGASEILQLEAL 85 (89)
T ss_dssp HHTSTSSHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHH
Confidence 99883247778899999999999999888774444443
No 227
>PHA02047 phage lambda Rz1-like protein
Probab=27.58 E-value=2.6e+02 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHER 197 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR 197 (254)
-|+|.+-|+.||+.+...-.-+-+.|.--|.|
T Consensus 32 ~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 32 AHEEAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888889887765555555555544444
No 228
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=27.41 E-value=2.2e+02 Score=23.65 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=22.1
Q ss_pred CCChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 025362 120 ITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERS 157 (254)
Q Consensus 120 ~~~g~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEks 157 (254)
+.||..|++.|++| + +.=|.||+++=|--
T Consensus 50 ~~DGd~fl~~L~~e-----~----~~LA~RIM~vR~~l 78 (111)
T PF02341_consen 50 LQDGDAFLEALMRE-----N----QELALRIMEVREHL 78 (111)
T ss_dssp CSSHHHHHHHHHCC----------HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH-----C----HHHHHHHHHHHHHH
Confidence 47999999999999 1 44599999875543
No 229
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.37 E-value=1.2e+02 Score=23.45 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 204 KEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
-.+.+++|-.....-+|+|.|||.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888888999999995
No 230
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=2.1e+02 Score=29.49 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHH--HhhHHH------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 166 KELEHASLKEHLQSL--LNDNQI------------LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 166 ~~~E~~~lKeql~~l--~~eN~i------------LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
++||...+.+++.+- ..+--+ -.+-++-=|.=-.+.-++..+--.+++.+..|++||-.-|..||-
T Consensus 415 Lqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l 494 (521)
T KOG1937|consen 415 LQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL 494 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH
Confidence 777777777777651 111111 223345556666677777788888888888888888888888887
Q ss_pred HHHHHHH
Q 025362 232 LKLHLQR 238 (254)
Q Consensus 232 L~~HL~q 238 (254)
-++-+-+
T Consensus 495 ~slEkl~ 501 (521)
T KOG1937|consen 495 KSLEKLH 501 (521)
T ss_pred hhHHHHH
Confidence 7665433
No 231
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.30 E-value=5.9e+02 Score=24.83 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=29.7
Q ss_pred CChhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 025362 121 TDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQ 178 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~ 178 (254)
-.|.-.-|+|-+|..-.-...-|-+|+--++|+ ||.......+ ++.+...++.+|.
T Consensus 74 ~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~-Ekvlk~aIq~-i~~~~q~~~~~Ln 129 (338)
T KOG3647|consen 74 QRGTTICEMLSKELLHKESLMSAAQRPLELLEV-EKVLKSAIQA-IQVRLQSSRAQLN 129 (338)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCccHHHH-HHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456777777777766665566666666555554 4444333333 3333333444443
No 232
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.10 E-value=5.7e+02 Score=25.52 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=31.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 176 HLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 176 ql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
.++.+..|-.-||..++-=-||.. .+.++.+++++ .++.||-+|-.||
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E---~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWE---VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 344555666667766655545543 33466676666 8888888888888
No 233
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.74 E-value=3.3e+02 Score=23.30 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 223 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 223 (254)
.|.++..+..|..-||--+.=-+.-.+++...+.-+..|+..+..||....
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444444444433444455555555555554
No 234
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.18 E-value=4.7e+02 Score=25.17 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHH------------------HHHHHHHh
Q 025362 123 GSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLK------------------EHLQSLLN 182 (254)
Q Consensus 123 g~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lK------------------eql~~l~~ 182 (254)
=.+|.+-+ ++ |+...+.+..+++..-|.+..+.|...-.. . ++.++..++ ..+....+
T Consensus 57 ld~~~~kl-~~-Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~ 134 (301)
T PF06120_consen 57 LDELKEKL-KE-MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATR 134 (301)
T ss_pred hHHHHHHH-Hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 34555543 33 456677777778777777777777663222 1 222221111 12334566
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 025362 183 DNQILKKAVSIQHERHLEQEQKEKEVE 209 (254)
Q Consensus 183 eN~iLKRAv~IQheR~~e~e~~~~E~~ 209 (254)
+...+.+.++..++|...-..+..+.|
T Consensus 135 ~la~~t~~L~~~~~~l~q~~~k~~~~q 161 (301)
T PF06120_consen 135 KLAEATRELAVAQERLEQMQSKASETQ 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777665555555444
No 235
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=26.08 E-value=3.4e+02 Score=23.99 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025362 207 EVELLKLVISQYQDQARN 224 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~ 224 (254)
++..++..+...+.++..
T Consensus 110 ~~~~~~~~l~~~~~~l~~ 127 (322)
T TIGR01730 110 AVEAAQADLEAAKASLAS 127 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 236
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=26.04 E-value=3e+02 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 204 KEKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
..+.+..+|++.+||=.-|..||.+++.+
T Consensus 87 q~Qrlk~iK~l~eqflK~le~le~~~~~~ 115 (130)
T PF04803_consen 87 QNQRLKAIKELHEQFLKSLEDLEKSHDNQ 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999998874
No 237
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=25.92 E-value=4.7e+02 Score=24.64 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 025362 185 QILKKAVS 192 (254)
Q Consensus 185 ~iLKRAv~ 192 (254)
.+||+|..
T Consensus 61 ~llkla~e 68 (272)
T KOG4552|consen 61 TLLKLAPE 68 (272)
T ss_pred HHHHHhHh
Confidence 45555544
No 238
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.84 E-value=6.4e+02 Score=28.53 Aligned_cols=67 Identities=22% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
++.+++.+..+-..|+.++.-| |+++-|...++.+.+.+.......-|+.+-..|..|+--|.+.++
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~k--R~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQ--RQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455444433 333333333333333222222333344444556666666665554
No 239
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=25.65 E-value=7.8e+02 Score=25.67 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHh--------hhhh-hhhHHHHHHHHHHHHHHhhHHHH
Q 025362 142 DARGRAARILEVFERSIIT--------NSKA-SKELEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 142 DAr~RAsRvLEafEksi~~--------r~~a-a~~~E~~~lKeql~~l~~eN~iL 187 (254)
|-..|=..|-.-|++=|.+ .+.+ .++.|...|..+++...+++.-+
T Consensus 406 E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l 460 (518)
T PF10212_consen 406 EEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESL 460 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665554 3333 28888888888887666655443
No 240
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=25.48 E-value=64 Score=28.94 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 57 EVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 57 q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
+-+.++|++||.+|.+..++||-.|
T Consensus 145 EhIqrvl~e~~~NiSeTARrL~MHR 169 (182)
T COG4567 145 EHIQRVLEECEGNISETARRLNMHR 169 (182)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhH
Confidence 4689999999999999999998653
No 241
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=25.22 E-value=2.4e+02 Score=22.15 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025362 165 SKELEHASLKEHLQSLLNDNQILKKAVSIQ 194 (254)
Q Consensus 165 a~~~E~~~lKeql~~l~~eN~iLKRAv~IQ 194 (254)
...++...|+..+..+..+|.-|...|.-|
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566667777778888887777766544
No 242
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=25.21 E-value=6.2e+02 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025362 205 EKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.+++..+.+-+..-+.++.+|+.
T Consensus 99 ~~~l~~~~~~l~~l~~~~~~l~~ 121 (372)
T PF04375_consen 99 QQELAQLQQQLAELQQQLAALSQ 121 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555666666677766654
No 243
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=25.19 E-value=9.8e+02 Score=26.63 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhH
Q 025362 124 SKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQ 201 (254)
Q Consensus 124 ~eWVel~V~EM~~Asd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~ 201 (254)
..|-+-+..-+..-..+.--.....+-++-++......... . +..+...+..++..+..+..-++..+.-..+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 455 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL--- 455 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------------HHHHHHhccCCCCCCCCC
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALK----------------LHLQRAQESSSIPRQFHP 251 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~----------------~HL~qA~~~~~~~g~~~P 251 (254)
+....++.++++-+.++++.+..++..--.+. .....+.... +||.+.|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~ 520 (1163)
T COG1196 456 EELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGP 520 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccch
No 244
>COG5281 Phage-related minor tail protein [Function unknown]
Probab=25.09 E-value=4.8e+02 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 190 AVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 190 Av~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
.-.++|.|+- .+. ..++++|+...+|..||-.|
T Consensus 528 ~~~~a~q~~l--~~q-~~l~~~kk~~l~y~~Qla~~ 560 (833)
T COG5281 528 LKEEAKQRQL--QEQ-KALLEHKKETLEYTSQLAEL 560 (833)
T ss_pred HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3345554442 222 77888888999999988766
No 245
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.06 E-value=4.8e+02 Score=23.05 Aligned_cols=13 Identities=15% Similarity=0.000 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 025362 210 LLKLVISQYQDQA 222 (254)
Q Consensus 210 ~Lkql~~qyqEqi 222 (254)
.++..+...+.++
T Consensus 106 ~~~~~~~~~~~~l 118 (322)
T TIGR01730 106 DAKAAVEAAQADL 118 (322)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 246
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=24.98 E-value=2.8e+02 Score=20.87 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHH
Q 025362 172 SLKEHLQSLLNDNQILKKAVSIQH-ERHLEQEQKEKEVELLKLVI 215 (254)
Q Consensus 172 ~lKeql~~l~~eN~iLKRAv~IQh-eR~~e~e~~~~E~~~Lkql~ 215 (254)
.|++|+..+.+-..-| .+-+|| ||.+-.+.--.|++.+.+-+
T Consensus 5 ~L~~QLd~I~~~K~~l--~ik~~H~Ekl~kitK~p~El~~i~~kl 47 (62)
T PF06034_consen 5 SLTQQLDEINQMKRQL--TIKSQHWEKLKKITKNPKELQEIEKKL 47 (62)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4777777766544432 356677 78776665556666654444
No 247
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=24.80 E-value=3.3e+02 Score=29.39 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 146 RAARILEVFERSIITNSKA-SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 146 RAsRvLEafEksi~~r~~a-a~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
|+--++-++--.|.+.... +-+|.++.++++++.|..| +|+ .|-.=|+++|.+..|...||+++-
T Consensus 203 k~~~~~A~L~~~~~~~~ts~E~~K~~vs~~e~i~~LQeE--~l~----tQ~kYQreLErlEKENkeLr~lll 268 (980)
T KOG0447|consen 203 RKGLLGALLLLQIQEESTSYEQQKRKVSDKEKIDQLQEE--LLH----TQLKYQRILERLEKENKELRKLVL 268 (980)
T ss_pred hhhhHHHHHHHHHhhccCCHHHHhhhhhHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3444444444444443333 3555566666666665554 222 222233344444555555554443
No 248
>PHA03162 hypothetical protein; Provisional
Probab=24.66 E-value=3.3e+02 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQ 194 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQ 194 (254)
.+.|-.+|.+|.-||.-||+-+.-+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456678888888888888887543
No 249
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.56 E-value=2.6e+02 Score=26.58 Aligned_cols=61 Identities=30% Similarity=0.334 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 168 LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 168 ~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
.|.+-+|+..+.+..- -.+-++|.++.-.|+..|..-+..-||++++||..|--|--.++.
T Consensus 128 ~~~~d~ke~~ee~kek----------l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 128 PEYMDLKEDYEELKEK----------LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred chhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777777777654321 134556677777788888888888899999999999887766653
No 250
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=24.37 E-value=6.7e+02 Score=24.43 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHH---HhhHH
Q 025362 166 KELEHASLKEHLQSL---LNDNQ 185 (254)
Q Consensus 166 ~~~E~~~lKeql~~l---~~eN~ 185 (254)
++-|...||++|+.| +.++.
T Consensus 227 ~e~e~e~Lke~lqel~~~~e~~~ 249 (307)
T PF15112_consen 227 LEIEMELLKEKLQELYLQAEEQE 249 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 566889999999988 34555
No 251
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=24.36 E-value=73 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHh
Q 025362 132 HEMMSAADLDDARGRAARILEVFERSIIT 160 (254)
Q Consensus 132 ~EM~~Asd~dDAr~RAsRvLEafEksi~~ 160 (254)
.||...--+. ..=|.+||+-|.|+|.+
T Consensus 20 Deli~~~~I~--p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 20 DELIQEGKIT--PQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHTTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 4555544444 24589999999999976
No 252
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=24.34 E-value=3.3e+02 Score=20.82 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 025362 185 QILKKAVSIQHERHLEQ-EQKEKEVELLKLVISQYQDQARNLELRN-YALKLHLQR 238 (254)
Q Consensus 185 ~iLKRAv~IQheR~~e~-e~~~~E~~~Lkql~~qyqEqir~LE~~N-YaL~~HL~q 238 (254)
..++-.+.++....... .+...-+..|.+.+.+....++.+=.-| |+|.+=..|
T Consensus 54 ~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 54 RWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 45666666666666666 7778889999999999888888888888 999986654
No 253
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.10 E-value=1.5e+02 Score=25.13 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
.||.-||..+....|+.++||+.|--|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777888888888777665
No 254
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.08 E-value=1.4e+02 Score=22.11 Aligned_cols=23 Identities=9% Similarity=0.123 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025362 205 EKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.+++++.++-+..|+.+++..|+
T Consensus 38 E~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 38 EQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 36777777888888888887653
No 255
>PRK14127 cell division protein GpsB; Provisional
Probab=24.01 E-value=93 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE 226 (254)
.|+..|+..+.+|+.|+...+
T Consensus 51 ~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 51 QENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 444455555666666665443
No 256
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=24.00 E-value=74 Score=29.15 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=35.2
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 26 RSRCSTFGSLVRSGS---DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
|+||- .++|.+ +.+...|...|+.+++..+++++.-||.....|++-+.+
T Consensus 141 ~SRc~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQ----IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED 193 (313)
T ss_pred Hhhce----eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 77884 344444 556677888888888888888888888777777655433
No 257
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.93 E-value=4.8e+02 Score=24.39 Aligned_cols=53 Identities=25% Similarity=0.081 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 188 KKAVSIQHERHLEQEQKEKEVELLKLVIS---QYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 188 KRAv~IQheR~~e~e~~~~E~~~Lkql~~---qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
.+-|.-.-+..+++.+..+|.+.||..+. +++..+..||..|=.|+--|--..
T Consensus 55 ~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 55 FEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 33444444445555555555555555553 445566777777777766554333
No 258
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.84 E-value=4.4e+02 Score=22.20 Aligned_cols=63 Identities=25% Similarity=0.221 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
+..++..+-++|..|.+-|..|-.=|-.-.++.++......+.....+.+.+++.+|..||..
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 344444444445555555555544444444444444444444444444444444444444443
No 259
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.80 E-value=2.1e+02 Score=30.08 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 025362 168 LEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 168 ~E~~~lKeql~~l~~eN~iL 187 (254)
-||+|||.+|..|-+||+-|
T Consensus 650 ~eNe~l~aelk~lreenq~l 669 (673)
T KOG4378|consen 650 NENEMLKAELKFLREENQTL 669 (673)
T ss_pred hhhHHHHHHHHHHHHhhhhh
Confidence 35555555565555555544
No 260
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.76 E-value=7.9e+02 Score=25.04 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=40.3
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcC----CCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 26 RSRCSTFGSLVRSGS---DDPVSFLLQMF----PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~v~~L~~lF----P~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
+.||-- ++|.+ .+++.+|..++ -.++++.++.+.+.+|.|+..|+.-|..+.+
T Consensus 164 ~SRc~~----~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~ 223 (491)
T PRK14964 164 ISRCQR----FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAI 223 (491)
T ss_pred HHhhee----eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457742 44443 66677777654 3689999999999999999999999988765
No 261
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.72 E-value=4e+02 Score=21.65 Aligned_cols=13 Identities=31% Similarity=0.182 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 025362 214 VISQYQDQARNLE 226 (254)
Q Consensus 214 l~~qyqEqir~LE 226 (254)
....++.++...+
T Consensus 95 ~~~~~~~~l~~~~ 107 (158)
T PF03938_consen 95 FQQQAQQQLQQEE 107 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 262
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.68 E-value=4.1e+02 Score=21.73 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=4.3
Q ss_pred HHHHHHhhhhh
Q 025362 154 FERSIITNSKA 164 (254)
Q Consensus 154 fEksi~~r~~a 164 (254)
||.=+..++..
T Consensus 47 YE~El~~Ha~~ 57 (132)
T PF07926_consen 47 YERELVKHAED 57 (132)
T ss_pred HHHHHHHhHHH
Confidence 44344444333
No 263
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=23.51 E-value=5e+02 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 185 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 185 ~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
.-+|.+|--||.+. .++..+|...+.||.+++|-+|
T Consensus 83 ~rIkq~FEkkNqks------ahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 83 ARIKQVFEKKNQKS------AHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777444 5788899999999999999999
No 264
>PRK09609 hypothetical protein; Provisional
Probab=23.49 E-value=2.1e+02 Score=27.74 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 208 VELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 208 ~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
.+.+++.+.-|+++++.+|..||-
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~~~~ 163 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKTNEE 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc
Confidence 567888999999999999977765
No 265
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=23.09 E-value=5.8e+02 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 187 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 187 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
+++-..++-.-+.+++..++++..+.+.++.-|.+++++-
T Consensus 85 ~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 85 LAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3444444444444444444444444455555555555444
No 266
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.08 E-value=2.6e+02 Score=25.58 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
||++...+.+++..|..||.-||-
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887775
No 267
>PHA00276 phage lambda Rz-like lysis protein
Probab=22.99 E-value=3.7e+02 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 210 LLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
.+-++-.+||+.+--.|-.|--|.-+|+.
T Consensus 53 aVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 53 AINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 44448889999999999999999888874
No 268
>COG3009 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.98 E-value=14 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=37.1
Q ss_pred HHHhhHH--HHHHHHHHHHHhhh-hHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025362 179 SLLNDNQ--ILKKAVSIQHERHL-EQEQKEKEVEL-LKLVISQYQDQARNLE 226 (254)
Q Consensus 179 ~l~~eN~--iLKRAv~IQheR~~-e~e~~~~E~~~-Lkql~~qyqEqir~LE 226 (254)
+|.++++ .+||-|.|+-+.+. .|+++++-++. +||+..|-.|+||+|+
T Consensus 139 ~L~~~~G~~~~~r~F~~e~eq~~~gyda~V~als~~~~Q~a~qia~~vk~l~ 190 (190)
T COG3009 139 RLLHDKGQPLINRPFHLELEQQGDGYDAMVRALSGGLKQLAAQIAEQVKRLP 190 (190)
T ss_pred EEeccccCccccCceeeeecccCCCHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4556566 68999999966655 79888876654 7888899999999874
No 269
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.91 E-value=7.1e+02 Score=24.22 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
|+..+...|.-|...+.-.-.||.+||+..--+.-+|..+|+.
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777888888888888899999999999999999888875
No 270
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.71 E-value=9.9e+02 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=39.0
Q ss_pred cccccCCCCCCCCCC---CCcHHHHHhcCC----CCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 26 RSRCSTFGSLVRSGS---DDPVSFLLQMFP----DVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 26 R~Rcsss~sp~r~~~---~~~v~~L~~lFP----~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
|.||- -++|.+ ..+..+|..++- .+++..++.+.+.+|.|+-+|+.-|..+.
T Consensus 166 lSRCq----~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 166 ISRCL----QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred HHhhh----eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57884 344444 566777776654 58899999999999999999998876643
No 271
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=22.67 E-value=1e+02 Score=23.26 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 47 LLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 47 L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
|..+--.-.++-+-.+|.+|+.|-|.|..+|..+
T Consensus 12 iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 12 IKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3333333345667889999999999999998763
No 272
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=7.5e+02 Score=24.40 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA---------RNLELRNYALKLHL 236 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi---------r~LE~~NYaL~~HL 236 (254)
..++.+.+.+++..+++-....|.++.-=..-.+-.+..++++...+..+.++..+. +..|..++-+.-+.
T Consensus 354 ~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 466788888999999998888888876444333344556666666666666666666 44455555555444
Q ss_pred HH
Q 025362 237 QR 238 (254)
Q Consensus 237 ~q 238 (254)
.+
T Consensus 434 ~~ 435 (503)
T KOG2273|consen 434 NE 435 (503)
T ss_pred HH
Confidence 33
No 273
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=22.50 E-value=29 Score=36.04 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 171 ASLKEHLQSLLNDNQILKKAVSIQ-----HERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 171 ~~lKeql~~l~~eN~iLKRAv~IQ-----heR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
..+++.+.+|.+||..||..+.-. +.=+...++.++....|........+++..|+...-.|.
T Consensus 455 ~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq 522 (713)
T PF05622_consen 455 AELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQ 522 (713)
T ss_dssp --------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999998765433 222234444444444554444445555555554444443
No 274
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=22.48 E-value=1e+03 Score=25.91 Aligned_cols=74 Identities=28% Similarity=0.268 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHE----RHL---EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQhe----R~~---e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
+.-|...|++...++..|-.+- |=.||.+ |-+ |........++|.+-+.+|++.+..++.+=.+...+++.
T Consensus 476 L~~ELqqLReERdRl~aeLqlS--a~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 476 LSLELQQLREERDRLDAELQLS--ARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6668888888888888886543 3334433 222 333445667889999999999999999998888888887
Q ss_pred Hhc
Q 025362 239 AQE 241 (254)
Q Consensus 239 A~~ 241 (254)
++.
T Consensus 554 s~e 556 (739)
T PF07111_consen 554 STE 556 (739)
T ss_pred HHH
Confidence 664
No 275
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.42 E-value=6.3e+02 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 025362 151 LEVFERSIITNSKASKELEHASLKEHLQSLLND 183 (254)
Q Consensus 151 LEafEksi~~r~~aa~~~E~~~lKeql~~l~~e 183 (254)
|+.|-.++..++.+ +.++...+++.+...++|
T Consensus 112 L~~~a~~~d~~~~~-~~~~~~~l~~~f~~~Lke 143 (243)
T cd07666 112 LKGMASCIDRCCKA-TDKRMKGLSEQLLPVIHE 143 (243)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444444433333 333333344443333333
No 276
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.40 E-value=7.2e+02 Score=24.10 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhh-h-----hhHHHHHHHHHHHHHHhhHHHHHHHHHH--------------------
Q 025362 140 LDDARGRAARILEVFERSIITNSKA-S-----KELEHASLKEHLQSLLNDNQILKKAVSI-------------------- 193 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~a-a-----~~~E~~~lKeql~~l~~eN~iLKRAv~I-------------------- 193 (254)
++++..+..+.-.--.+-+..|... . +..+...+.++++.|..+...|.+|+..
T Consensus 30 ~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~ 109 (384)
T PF03148_consen 30 INETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPG 109 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCC
Q ss_pred --------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 194 --------QHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 194 --------QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
..+-.||.+-...--.-|++.+.+..|||+.|...-|-|.+=++
T Consensus 110 ~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~ 161 (384)
T PF03148_consen 110 IDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLS 161 (384)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 277
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.37 E-value=5.7e+02 Score=22.93 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
+..|...|+.+++.+.+|...|+. ++++. ...+..+++.++.-++||..++...=.|.=.+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l------~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEV----YNEQL------ERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888776 23222 22333444444555555555554444444333
No 278
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.36 E-value=5.4e+02 Score=22.64 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025362 204 KEKEVELLKLVISQY 218 (254)
Q Consensus 204 ~~~E~~~Lkql~~qy 218 (254)
...++.+|+.-+..|
T Consensus 115 l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 115 LKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 279
>smart00338 BRLZ basic region leucin zipper.
Probab=22.31 E-value=3e+02 Score=19.64 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 203 QKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 203 ~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
+...+++.|.......+.+|..|+..+..|.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555666666655555554
No 280
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.30 E-value=7.6e+02 Score=24.33 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCCC
Q 025362 207 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPDI 253 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 253 (254)
+...|+..+.+-.++|+.||..-+.+.--+..... .+|-.-||||
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~iPN~~~~~v 111 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELLL--RIPNLPHDSV 111 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCccC
Confidence 34456667777777788888777777766665443 3555555655
No 281
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=22.18 E-value=80 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.4
Q ss_pred HHHHhcCCCCCHHHHHHHHhhcc
Q 025362 45 SFLLQMFPDVDPEVVKSVLGEHD 67 (254)
Q Consensus 45 ~~L~~lFP~md~q~le~aLe~cg 67 (254)
..|+++||+.|...++++|+.-.
T Consensus 39 ~Rl~~f~~~~D~~~~~~~l~~~~ 61 (118)
T PF11236_consen 39 KRLRAFFPELDIDLVRAALEAFE 61 (118)
T ss_pred HHHHHhCccCCHHHHHHHHHHHH
Confidence 88999999999999999887644
No 282
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.17 E-value=4.1e+02 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=4.9
Q ss_pred hhHHHHHHHHH
Q 025362 166 KELEHASLKEH 176 (254)
Q Consensus 166 ~~~E~~~lKeq 176 (254)
+.+|+..|++|
T Consensus 29 L~eEI~~Lr~q 39 (86)
T PF12711_consen 29 LKEEIQLLREQ 39 (86)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 283
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.99 E-value=3e+02 Score=19.61 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
++...+.++..+++-..+.+++|..|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555556666555
No 284
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.93 E-value=2.4e+02 Score=29.74 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 144 RGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 144 r~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLK 188 (254)
|-|=...++.+|.=+-+--.. . +.+||..||.||+.|..||..||
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 333444566666555543333 2 89999999999999999999886
No 285
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.92 E-value=8.7e+02 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhHH
Q 025362 169 EHASLKEHLQSLLNDNQ 185 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~ 185 (254)
+...+.+++..+..++.
T Consensus 61 ~~~~~~~~l~~~~~~~~ 77 (475)
T PRK10361 61 ECELLNNEVRSLQSINT 77 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 286
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.91 E-value=3.7e+02 Score=20.54 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHH
Q 025362 150 ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 150 vLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iL 187 (254)
+||.++++...+-.+ .+.....|+.+++...++|+-|
T Consensus 11 ale~Lq~~y~~q~~~-Wq~sy~~Lq~~~~~t~~~~a~L 47 (70)
T PF04899_consen 11 ALEELQQSYEKQQQE-WQSSYADLQHMFEQTSQENAAL 47 (70)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHH
Confidence 466666666665555 5666666666666666666644
No 287
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=21.90 E-value=4.8e+02 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 025362 212 KLVISQYQDQARNLELR 228 (254)
Q Consensus 212 kql~~qyqEqir~LE~~ 228 (254)
+.++..||++||..|+.
T Consensus 87 ~~~~~~~q~~vRq~E~~ 103 (292)
T PF11981_consen 87 AELVQRLQDAVRQREQQ 103 (292)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56888999999999986
No 288
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=21.88 E-value=5.5e+02 Score=22.56 Aligned_cols=17 Identities=47% Similarity=0.562 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHHHHH
Q 025362 139 DLDDARGRAARILEVFE 155 (254)
Q Consensus 139 d~dDAr~RAsRvLEafE 155 (254)
=+.|||..|.+||+.=|
T Consensus 35 IL~~A~~qA~~Il~~Ae 51 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAE 51 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36799999999987544
No 289
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.73 E-value=8.5e+02 Score=24.68 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 025362 145 GRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 203 (254)
Q Consensus 145 ~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~ 203 (254)
.|.+-.+.++=....++..+ +.+....|+..-..+..|..=|+.+..-|.++++..+-
T Consensus 146 ~R~ai~~~~l~~~~~~~i~~-l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~ 203 (420)
T COG4942 146 VRLAIYYGALNPARAERIDA-LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203 (420)
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554 44444444444455555566666666666666554443
No 290
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.59 E-value=6.7e+02 Score=23.40 Aligned_cols=60 Identities=23% Similarity=0.203 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ-KEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~-~~~E~~~Lkql~~qyqEqir~L 225 (254)
+..|..-|-+.++.+..+-..|+..+.-|-.-..+++. -..+++.+++..-.+..+...|
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554444433333333 2244555555555555554444
No 291
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.43 E-value=4.5e+02 Score=21.42 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHhhHHHH
Q 025362 140 LDDARGRAARILEVFERSIITNSKAS-------KELEHASLKEHLQSLLNDNQIL 187 (254)
Q Consensus 140 ~dDAr~RAsRvLEafEksi~~r~~aa-------~~~E~~~lKeql~~l~~eN~iL 187 (254)
+++.+.+|..-.+-+|+.+.+++..+ .++|...|++++..|...-.=|
T Consensus 61 ~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 61 LEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666777777766552 4456666666666555543333
No 292
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.43 E-value=1.3e+02 Score=26.01 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+.+|+.+|..|++.|..||.-+.+
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 293
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=21.25 E-value=91 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.1
Q ss_pred CHHHHHHHHhhcc--hhHHHHHHHHhhhh
Q 025362 55 DPEVVKSVLGEHD--NKIEDAIDRLRVLS 81 (254)
Q Consensus 55 d~q~le~aLe~cg--ndlDaAIksL~~L~ 81 (254)
+|.++|.+|.+|- |||-.||+-|--+.
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5889999999995 89999999887763
No 294
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=21.18 E-value=2.2e+02 Score=29.93 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
.+.+|+.+++|+.+..-|.--|.||.+ |+-||+
T Consensus 626 ~~lqqd~~kmkk~leeEqkaRrdLe~l---l~k~l~ 658 (661)
T KOG2070|consen 626 SELQQDNKKMKKVLEEEQKARRDLEKL---LRKMLK 658 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 445677777777777777777777764 444443
No 295
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.97 E-value=6.5e+02 Score=23.83 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 245 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 245 (254)
+..+...|+.+.+...+|..-|+.-+.+-..|..--. .=+..|..--..+++++..|+.....|--..--|--.-+.
T Consensus 247 l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~---~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY 323 (344)
T PF12777_consen 247 LEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAE---KLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISY 323 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH---HHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444555554444444444443333333332111 1111222222334555555555554444333333333345
Q ss_pred CCCCCC
Q 025362 246 PRQFHP 251 (254)
Q Consensus 246 ~g~~~P 251 (254)
.|.|+|
T Consensus 324 ~G~f~~ 329 (344)
T PF12777_consen 324 LGPFTP 329 (344)
T ss_dssp CCCTSH
T ss_pred cCCCCH
Confidence 565543
No 296
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.93 E-value=6e+02 Score=22.63 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHH---HHhhhhhhhhHHHHHHH----HHHHHHHhhHHHHHHHHH
Q 025362 149 RILEVFERS---IITNSKASKELEHASLK----EHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 149 RvLEafEks---i~~r~~aa~~~E~~~lK----eql~~l~~eN~iLKRAv~ 192 (254)
.=|.+||-. +..-++|.-..-|..++ +++..+.+++.-+||+..
T Consensus 29 tql~afe~~g~~L~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~ 79 (170)
T PRK13923 29 TQLKAFEEVGDALKRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLG 79 (170)
T ss_pred hHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccc
Confidence 346677733 22223331222244444 788899999999998843
No 297
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.92 E-value=9.4e+02 Score=27.11 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 171 ASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 171 ~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
-++++..--|-.+..-+|+-+.|-..+..+. .-|++.|...+..||+++|.-|.
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~l---E~ekq~lQ~ti~~~q~d~ke~et 141 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRL---EMEKQKLQDTIQGAQDDKKENEI 141 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555544444333 35666777789999999986543
No 298
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=20.86 E-value=5.8e+02 Score=23.57 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC
Q 025362 210 LLKLVISQYQDQARNLELRNYALKLHLQRAQESS 243 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~ 243 (254)
.|.++-.+|++.-+.|+. |..+++|..+.-
T Consensus 102 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 131 (239)
T TIGR03789 102 ALEQLEAEYQQAQVHLET----LQQDQQQLLEEL 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhcc
Confidence 344455666665555553 344555554443
No 299
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.84 E-value=8.9e+02 Score=25.33 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 205 EKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
.+.+..|...+.+++.|+..||+.
T Consensus 384 ~~~l~~le~~l~~~~~~~~~L~~~ 407 (656)
T PRK06975 384 DSQFAQLDGKLADAQSAQQALEQQ 407 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666554
No 300
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.80 E-value=1e+03 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHhhcchhHHHHHHHHhh
Q 025362 58 VVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~ 79 (254)
.|-..|+++-..|+.+-.-|.+
T Consensus 283 ~L~~~L~e~Q~qLe~a~~als~ 304 (717)
T PF09730_consen 283 SLLSNLQESQKQLEHAQGALSE 304 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777666554443
No 301
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.78 E-value=8.6e+02 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 025362 211 LKLVISQYQDQAR-NLELRNYALKLHLQRA 239 (254)
Q Consensus 211 Lkql~~qyqEqir-~LE~~NYaL~~HL~qA 239 (254)
..++...|+++++ .|+.+.-++.-||+++
T Consensus 320 ~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~ 349 (582)
T PF09731_consen 320 REELEEKYEEELRQELKRQEEAHEEHLKNE 349 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667888887 7888888888888876
No 302
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=20.74 E-value=4.1e+02 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE 226 (254)
+-+.++|.-++--..+||.|.
T Consensus 57 ~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 57 KLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666654
No 303
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=20.69 E-value=1.4e+02 Score=25.25 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 025362 171 ASLKEHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 171 ~~lKeql~~l~~eN~iLKRAv~ 192 (254)
+.|-.+|.+|.-||.-||+-|.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 304
>PF13991 BssS: BssS protein family
Probab=20.63 E-value=98 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 025362 210 LLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE~~NYa 231 (254)
+.||+++.-+++|..+|-+-|.
T Consensus 46 ~Ar~Li~~L~~~I~kiE~se~~ 67 (73)
T PF13991_consen 46 MARQLISILEAGIDKIESSEYQ 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHhCCcc
Confidence 6789999999999999988774
No 305
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=20.48 E-value=81 Score=23.70 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 025362 144 RGRAARILEVFERS 157 (254)
Q Consensus 144 r~RAsRvLEafEks 157 (254)
=+||+|+++.+|+.
T Consensus 34 ynrAariid~LE~~ 47 (65)
T PF09397_consen 34 YNRAARIIDQLEEE 47 (65)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
Confidence 37999999999973
No 306
>PRK11677 hypothetical protein; Provisional
Probab=20.47 E-value=1.5e+02 Score=25.30 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.8
Q ss_pred HHHHHhhhHHHHHHHHH
Q 025362 222 ARNLELRNYALKLHLQR 238 (254)
Q Consensus 222 ir~LE~~NYaL~~HL~q 238 (254)
+.+|-.+==-|--||.+
T Consensus 63 l~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 63 LDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444456667744
No 307
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.33 E-value=1.1e+03 Score=25.36 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.9
Q ss_pred cCCCCCHH
Q 025362 50 MFPDVDPE 57 (254)
Q Consensus 50 lFP~md~q 57 (254)
+|-+.||.
T Consensus 416 ~~~GtDp~ 423 (782)
T PRK00409 416 LGAGTDPD 423 (782)
T ss_pred CCCCCCHH
Confidence 44555543
No 308
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.33 E-value=2.1e+02 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.240 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQA 222 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqi 222 (254)
+.+...+|++.+++++.+.+..|
T Consensus 51 e~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 51 EVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566677777777777766544
No 309
>PRK12704 phosphodiesterase; Provisional
Probab=20.32 E-value=9.3e+02 Score=24.59 Aligned_cols=12 Identities=50% Similarity=0.664 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHH
Q 025362 141 DDARGRAARILE 152 (254)
Q Consensus 141 dDAr~RAsRvLE 152 (254)
.+|+..|..+++
T Consensus 34 ~~Ae~eAe~I~k 45 (520)
T PRK12704 34 KEAEEEAKRILE 45 (520)
T ss_pred HHHHHHHHHHHH
Confidence 567777766663
No 310
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=20.23 E-value=7.3e+02 Score=25.47 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=60.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHHH
Q 025362 137 AADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVEL 210 (254)
Q Consensus 137 Asd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~ 210 (254)
-..+++|+.=..|+++.++|.-...... + ..-|..++.+.....-..-.+|++|+.|+-....+.. +--..+..
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 3678899999999999999933332222 2 5556677777777777888888888888874443332 22255667
Q ss_pred HHHHHHHHHHHHHHH
Q 025362 211 LKLVISQYQDQARNL 225 (254)
Q Consensus 211 Lkql~~qyqEqir~L 225 (254)
|.+...+|+|-..-+
T Consensus 376 l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELY 390 (508)
T ss_pred HHHHhcchhHHHHHH
Confidence 777777777754433
No 311
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.21 E-value=3.1e+02 Score=19.06 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 188 KKAVSIQHERHL---EQEQKEKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 188 KRAv~IQheR~~---e~e~~~~E~~~Lkql~~qyqEqir~LE 226 (254)
++=.+-+..|.+ ..+++.+++..|+....+-+.+|..|+
T Consensus 11 rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 11 RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444443 222344444444444444444444443
Done!