Query 025362
Match_columns 254
No_of_seqs 66 out of 68
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhy_A CUE domain-containing p 99.0 1.8E-10 6E-15 85.5 4.5 44 41-84 19-62 (67)
2 1wgl_A TOLL-interacting protei 99.0 2.5E-10 8.5E-15 82.6 4.4 45 41-85 10-54 (59)
3 1p3q_Q VPS9P, vacuolar protein 97.9 1.8E-06 6.1E-11 61.8 0.9 39 42-80 14-52 (54)
4 1otr_A Protein CUE2; protein-p 97.7 2.6E-05 9E-10 54.6 3.7 37 44-80 8-44 (49)
5 2di0_A Activating signal coint 96.9 0.0011 3.7E-08 49.8 4.5 39 41-79 14-52 (71)
6 2jee_A YIIU; FTSZ, septum, coi 96.3 0.049 1.7E-06 41.7 10.5 67 149-225 6-74 (81)
7 2v71_A Nuclear distribution pr 94.7 0.62 2.1E-05 40.4 12.9 74 166-239 54-128 (189)
8 1z96_A DNA-damage, UBA-domain 94.2 0.065 2.2E-06 34.1 4.4 34 42-77 6-39 (40)
9 1vg5_A RSGI RUH-014, rhomboid 94.1 0.06 2.1E-06 40.1 4.5 37 41-79 30-66 (73)
10 2v66_B Nuclear distribution pr 93.8 0.61 2.1E-05 37.4 10.2 69 170-238 5-74 (111)
11 2cpw_A CBL-interacting protein 92.8 0.33 1.1E-05 34.9 6.5 52 23-79 5-57 (64)
12 2dae_A KIAA0733 protein; mitog 92.7 0.081 2.8E-06 40.0 3.2 37 43-79 13-49 (75)
13 2jy5_A Ubiquilin-1; UBA, alter 92.6 0.16 5.4E-06 35.1 4.5 37 41-79 13-50 (52)
14 2dak_A Ubiquitin carboxyl-term 92.6 0.088 3E-06 37.5 3.2 37 41-79 10-46 (63)
15 2knz_A Ubiquilin-4; cytoplasm, 92.4 0.15 5E-06 35.3 4.0 36 42-79 13-49 (53)
16 1vej_A Riken cDNA 4931431F19; 92.4 0.14 4.8E-06 38.3 4.2 36 42-79 31-67 (74)
17 2g3q_A Protein YBL047C; endocy 92.0 0.2 6.9E-06 32.7 4.1 36 42-79 6-41 (43)
18 2cp9_A EF-TS, EF-TSMT, elongat 91.4 0.19 6.4E-06 36.8 3.9 40 41-81 10-49 (64)
19 1wji_A Tudor domain containing 91.4 0.23 7.7E-06 35.7 4.2 37 41-79 10-46 (63)
20 2dah_A Ubiquilin-3; UBA domain 91.2 0.22 7.7E-06 34.8 4.0 37 42-80 11-48 (54)
21 2bwb_A Ubiquitin-like protein 90.7 0.31 1.1E-05 32.9 4.2 36 42-79 9-45 (46)
22 1ify_A HHR23A, UV excision rep 90.2 0.28 9.5E-06 33.4 3.6 37 41-79 9-45 (49)
23 2ejs_A Autocrine motility fact 89.1 0.31 1.1E-05 35.1 3.3 41 41-82 14-54 (58)
24 1wj7_A Hypothetical protein (R 88.8 0.41 1.4E-05 38.1 4.1 36 43-79 42-77 (104)
25 1wr1_B Ubiquitin-like protein 88.1 0.54 1.8E-05 33.4 3.9 36 42-79 19-55 (58)
26 4g3o_A E3 ubiquitin-protein li 87.7 0.41 1.4E-05 34.5 3.1 38 41-79 18-55 (58)
27 1whc_A RSGI RUH-027, UBA/UBX 3 86.9 1.3 4.5E-05 31.6 5.5 37 41-79 10-47 (64)
28 3hnw_A Uncharacterized protein 86.7 7.6 0.00026 31.7 10.7 95 121-229 31-133 (138)
29 2ekf_A Ancient ubiquitous prot 86.3 0.84 2.9E-05 33.2 4.2 41 41-82 14-54 (61)
30 2crn_A Ubash3A protein; compac 85.8 1.6 5.4E-05 31.3 5.4 38 41-80 10-48 (64)
31 3oja_B Anopheles plasmodium-re 85.6 7.3 0.00025 36.6 11.4 73 167-242 508-580 (597)
32 1veg_A NEDD8 ultimate buster-1 82.6 1.3 4.6E-05 33.7 4.1 37 41-79 30-66 (83)
33 2ekk_A UBA domain from E3 ubiq 82.5 1.2 4.3E-05 29.5 3.5 36 41-79 10-45 (47)
34 1dv0_A DNA repair protein HHR2 81.6 0.85 2.9E-05 30.8 2.4 35 43-79 7-41 (47)
35 2oqq_A Transcription factor HY 81.4 4.9 0.00017 27.3 6.0 35 200-237 7-41 (42)
36 2w6b_A RHO guanine nucleotide 80.8 7.4 0.00025 27.9 7.0 31 155-193 5-35 (56)
37 2zxx_A Geminin; coiled-coil, c 79.8 4.7 0.00016 30.6 6.1 45 196-240 24-68 (79)
38 2dag_A Ubiquitin carboxyl-term 79.8 1.9 6.5E-05 31.7 3.9 38 41-80 10-48 (74)
39 1wiv_A UBP14, ubiquitin-specif 79.6 2.1 7.1E-05 31.4 4.1 37 41-79 30-66 (73)
40 2dna_A Unnamed protein product 79.2 1.5 5.1E-05 32.2 3.2 36 43-80 22-58 (67)
41 1gk7_A Vimentin; intermediate 78.9 3.2 0.00011 27.4 4.4 32 206-237 6-37 (39)
42 2dkl_A Trinucleotide repeat co 77.7 2.5 8.6E-05 32.0 4.1 41 41-83 22-62 (85)
43 2dfs_A Myosin-5A; myosin-V, in 77.5 37 0.0012 35.8 14.1 62 166-227 989-1051(1080)
44 1hjb_A Ccaat/enhancer binding 75.7 5.6 0.00019 30.4 5.6 39 173-221 41-79 (87)
45 2dai_A Ubadc1, ubiquitin assoc 74.3 3.5 0.00012 31.0 4.1 37 41-79 30-66 (83)
46 2w83_C C-JUN-amino-terminal ki 72.3 17 0.00059 27.5 7.4 53 175-227 9-72 (77)
47 3qne_A Seryl-tRNA synthetase, 71.2 44 0.0015 32.4 12.0 59 166-231 45-103 (485)
48 1hjb_A Ccaat/enhancer binding 70.6 8.7 0.0003 29.3 5.6 27 166-192 48-74 (87)
49 1gu4_A CAAT/enhancer binding p 68.3 5.3 0.00018 29.9 3.9 24 166-189 48-71 (78)
50 3s4r_A Vimentin; alpha-helix, 68.2 7.2 0.00025 29.8 4.7 35 207-241 10-44 (93)
51 1nkp_B MAX protein, MYC proto- 68.2 10 0.00035 27.7 5.4 40 185-224 40-79 (83)
52 1gd2_E Transcription factor PA 67.8 8.7 0.0003 28.2 4.9 23 166-188 48-70 (70)
53 4fla_A Regulation of nuclear P 67.8 51 0.0017 27.2 12.9 78 144-236 67-144 (152)
54 1vdl_A Ubiquitin carboxyl-term 67.7 6.4 0.00022 29.9 4.2 41 41-81 25-65 (80)
55 1ci6_A Transcription factor AT 67.4 6.7 0.00023 27.9 4.1 41 166-216 21-61 (63)
56 2lbc_A Ubiquitin carboxyl-term 67.4 5.3 0.00018 31.4 3.9 37 41-79 79-115 (126)
57 1ses_A Seryl-tRNA synthetase; 66.8 40 0.0014 31.6 10.5 77 166-253 33-109 (421)
58 1a93_B MAX protein, coiled coi 66.2 8.5 0.00029 25.0 4.0 22 205-226 13-34 (34)
59 3oja_B Anopheles plasmodium-re 65.7 41 0.0014 31.5 10.3 31 168-198 530-560 (597)
60 2cwb_A Chimera of immunoglobul 65.4 4.6 0.00016 32.0 3.2 38 41-79 67-104 (108)
61 1uii_A Geminin; human, DNA rep 65.3 26 0.00087 26.8 7.2 20 169-188 47-66 (83)
62 2dq0_A Seryl-tRNA synthetase; 64.8 70 0.0024 30.4 11.8 79 166-253 36-114 (455)
63 4ae4_A Ubiquitin-associated pr 64.6 5.2 0.00018 31.8 3.4 35 43-79 79-113 (118)
64 1wlq_A Geminin; coiled-coil; 2 62.8 25 0.00084 26.9 6.7 37 197-233 29-65 (83)
65 1aip_C EF-TS, elongation facto 60.0 4.5 0.00015 35.2 2.4 27 59-85 21-47 (196)
66 1uii_A Geminin; human, DNA rep 59.7 21 0.00072 27.3 5.8 35 198-232 38-72 (83)
67 2wvr_A Geminin; DNA replicatio 59.5 26 0.0009 30.8 7.2 22 167-188 114-135 (209)
68 1ci6_A Transcription factor AT 59.0 44 0.0015 23.5 8.1 25 166-190 35-59 (63)
69 2j5u_A MREC protein; bacterial 57.8 7.1 0.00024 34.4 3.4 33 183-215 27-59 (255)
70 1xb2_B EF-TS, elongation facto 57.5 5.1 0.00017 36.5 2.4 22 58-79 21-42 (291)
71 1wgn_A UBAP1, ubiquitin associ 56.1 6.9 0.00023 28.6 2.5 35 43-79 22-56 (63)
72 2ooa_A E3 ubiquitin-protein li 55.4 12 0.00043 26.3 3.6 39 42-82 13-51 (52)
73 1v92_A NSFL1 cofactor P47; 3-h 55.2 9.1 0.00031 24.7 2.8 36 43-79 8-43 (46)
74 3a7p_A Autophagy protein 16; c 54.6 95 0.0033 26.0 10.2 36 197-232 94-129 (152)
75 4emc_A Monopolin complex subun 52.9 52 0.0018 28.6 7.9 24 166-189 25-48 (190)
76 2cp8_A NEXT to BRCA1 gene 1 pr 52.6 12 0.00042 26.4 3.2 37 43-81 12-49 (54)
77 1tr8_A Conserved protein (MTH1 52.5 9.9 0.00034 29.7 3.0 33 44-77 69-101 (102)
78 1vek_A UBP14, ubiquitin-specif 52.5 16 0.00055 27.3 4.1 38 41-80 30-68 (84)
79 1t2k_D Cyclic-AMP-dependent tr 52.0 56 0.0019 22.5 7.0 21 169-189 23-43 (61)
80 1gu4_A CAAT/enhancer binding p 51.9 14 0.00049 27.5 3.7 38 170-217 38-75 (78)
81 1oai_A Nuclear RNA export fact 51.5 15 0.00052 25.8 3.6 31 52-82 18-48 (59)
82 1dip_A Delta-sleep-inducing pe 51.3 13 0.00043 28.2 3.3 31 206-236 15-45 (78)
83 3oja_A Leucine-rich immune mol 50.8 1.1E+02 0.0037 28.1 10.3 36 204-239 426-461 (487)
84 3l4f_A RHO guanine nucleotide 50.7 51 0.0017 23.9 6.3 26 173-198 12-38 (61)
85 3na7_A HP0958; flagellar bioge 49.8 88 0.003 27.0 9.0 20 204-223 65-84 (256)
86 1i84_S Smooth muscle myosin he 49.4 1.3E+02 0.0043 31.7 11.6 14 54-67 695-708 (1184)
87 2yy0_A C-MYC-binding protein; 49.2 19 0.00065 25.0 3.8 24 166-189 24-47 (53)
88 2d9s_A CBL E3 ubiquitin protei 48.9 18 0.00061 25.6 3.6 36 43-80 12-47 (53)
89 4ae4_A Ubiquitin-associated pr 48.8 13 0.00043 29.6 3.2 38 41-80 9-46 (118)
90 4dzn_A Coiled-coil peptide CC- 48.4 29 0.001 22.0 4.1 24 166-189 7-30 (33)
91 4dzn_A Coiled-coil peptide CC- 48.3 19 0.00064 22.9 3.2 21 169-189 3-23 (33)
92 1wle_A Seryl-tRNA synthetase; 48.0 1.9E+02 0.0065 27.9 11.9 43 202-253 119-161 (501)
93 2dfs_A Myosin-5A; myosin-V, in 45.8 90 0.0031 32.9 9.8 14 54-67 673-686 (1080)
94 1go4_E MAD1 (mitotic arrest de 45.5 96 0.0033 24.2 7.7 27 167-193 11-37 (100)
95 1nkp_A C-MYC, MYC proto-oncoge 44.9 64 0.0022 24.0 6.4 8 185-192 45-52 (88)
96 1deb_A APC protein, adenomatou 44.8 79 0.0027 22.3 7.2 19 173-191 8-26 (54)
97 3iox_A AGI/II, PA; alpha helix 44.7 2.4E+02 0.0082 27.7 15.0 74 143-227 21-94 (497)
98 3vp9_A General transcriptional 44.6 52 0.0018 25.5 5.9 15 214-228 69-83 (92)
99 1jnm_A Proto-oncogene C-JUN; B 44.1 36 0.0012 23.7 4.6 20 169-188 23-42 (62)
100 2lva_A Ubiquitin carboxyl-term 49.9 4.8 0.00017 33.1 0.0 44 41-84 19-62 (129)
101 2wt7_A Proto-oncogene protein 42.9 83 0.0028 21.9 7.1 41 166-216 21-61 (63)
102 2oo9_A E3 ubiquitin-protein li 42.8 24 0.00081 24.4 3.3 28 53-80 15-42 (46)
103 3a2a_A Voltage-gated hydrogen 41.5 85 0.0029 22.5 6.2 37 176-215 12-48 (58)
104 3e7l_A Transcriptional regulat 40.7 6.7 0.00023 26.9 0.3 26 53-78 18-43 (63)
105 3ghg_A Fibrinogen alpha chain; 40.6 1.5E+02 0.005 29.6 9.8 103 58-203 50-152 (562)
106 2akf_A Coronin-1A; coiled coil 40.4 58 0.002 20.6 4.6 24 206-229 6-29 (32)
107 2v4h_A NF-kappa-B essential mo 40.4 1.4E+02 0.0048 23.8 9.5 17 213-229 90-106 (110)
108 1nlw_A MAD protein, MAX dimeri 40.3 68 0.0023 23.6 5.8 8 185-192 40-47 (80)
109 2yy0_A C-MYC-binding protein; 40.0 51 0.0017 22.8 4.8 26 200-225 20-45 (53)
110 1t6f_A Geminin; coiled-coil, c 39.2 74 0.0025 20.9 5.1 28 205-232 6-33 (37)
111 3k9o_A Ubiquitin-conjugating e 38.8 32 0.0011 28.9 4.3 34 44-79 167-200 (201)
112 2dal_A Protein KIAA0794; FAS a 38.2 29 0.001 24.2 3.4 38 41-79 16-53 (62)
113 2dzl_A Protein FAM100B; UBA-li 38.0 31 0.0011 24.6 3.5 37 42-79 19-55 (66)
114 4a5u_A RNA replicase polyprote 37.8 10 0.00034 32.3 1.0 73 6-81 24-118 (160)
115 4emc_A Monopolin complex subun 37.3 97 0.0033 26.9 7.1 46 177-225 22-67 (190)
116 2dq3_A Seryl-tRNA synthetase; 36.4 38 0.0013 31.7 4.9 63 169-231 38-100 (425)
117 4dk0_A Putative MACA; alpha-ha 36.3 60 0.0021 28.3 5.9 30 199-228 115-144 (369)
118 1umq_A Photosynthetic apparatu 35.9 16 0.00055 27.1 1.8 25 54-78 41-65 (81)
119 1a93_B MAX protein, coiled coi 35.9 41 0.0014 21.8 3.4 24 166-189 5-28 (34)
120 3mq7_A Bone marrow stromal ant 35.0 1.8E+02 0.0062 23.6 8.2 40 201-240 73-112 (121)
121 3hx3_A Retinaldehyde-binding p 35.0 35 0.0012 30.2 4.1 30 51-80 87-116 (316)
122 1aua_A Phosphatidylinositol tr 34.9 39 0.0013 29.1 4.3 36 44-79 34-75 (296)
123 3ghg_A Fibrinogen alpha chain; 34.9 2.2E+02 0.0075 28.4 10.0 30 202-231 127-156 (562)
124 3vem_A Helicase protein MOM1; 34.3 1.8E+02 0.0062 23.3 7.8 50 173-227 37-86 (115)
125 2dam_A ETEA protein; KIAA0887, 34.3 37 0.0013 24.2 3.4 39 41-79 19-57 (67)
126 2qsf_X RAD23, UV excision repa 34.1 42 0.0014 28.4 4.3 36 42-79 132-167 (171)
127 2lbc_A Ubiquitin carboxyl-term 33.6 25 0.00086 27.4 2.7 37 42-80 5-42 (126)
128 3lss_A Seryl-tRNA synthetase; 32.9 3.2E+02 0.011 26.4 10.8 37 215-253 113-149 (484)
129 3m9b_A Proteasome-associated A 32.7 52 0.0018 29.6 4.9 54 166-225 29-94 (251)
130 3e21_A HFAF1, FAS-associated f 32.6 29 0.00098 23.4 2.4 35 42-76 7-41 (45)
131 2juj_A E3 ubiquitin-protein li 32.6 32 0.0011 24.6 2.8 37 44-82 11-47 (56)
132 2jp7_A MRNA export factor MEX6 32.5 32 0.0011 24.2 2.8 29 52-80 17-45 (57)
133 2jn6_A Protein CGL2762, transp 31.3 3.2 0.00011 30.2 -2.7 28 166-193 64-91 (97)
134 3he5_B Synzip2; heterodimeric 30.6 1.3E+02 0.0045 20.6 6.7 41 170-227 5-45 (52)
135 2l5g_B Putative uncharacterize 30.5 1.2E+02 0.0041 20.5 5.2 29 200-228 10-38 (42)
136 3mq9_A Bone marrow stromal ant 30.2 3.1E+02 0.011 24.8 13.2 88 150-239 357-462 (471)
137 2oqq_A Transcription factor HY 29.6 1.3E+02 0.0045 20.3 5.8 26 166-191 15-40 (42)
138 1dip_A Delta-sleep-inducing pe 29.2 53 0.0018 24.8 3.6 20 166-185 13-32 (78)
139 2zxx_A Geminin; coiled-coil, c 28.8 34 0.0012 25.8 2.6 24 166-189 39-62 (79)
140 2dgc_A Protein (GCN4); basic d 28.8 76 0.0026 22.4 4.3 23 166-188 28-50 (63)
141 1nkp_B MAX protein, MYC proto- 28.6 70 0.0024 23.1 4.2 34 205-238 46-79 (83)
142 3nmd_A CGMP dependent protein 27.6 1.8E+02 0.0061 21.5 6.3 44 173-219 24-67 (72)
143 1g2h_A Transcriptional regulat 27.4 17 0.00057 24.9 0.5 27 51-78 18-44 (61)
144 1ik9_A DNA repair protein XRCC 27.0 3E+02 0.01 23.6 10.9 52 166-224 151-208 (213)
145 4e61_A Protein BIM1; EB1-like 26.8 95 0.0032 24.6 4.9 27 165-191 8-34 (106)
146 2v4h_A NF-kappa-B essential mo 26.7 29 0.001 27.8 2.0 14 170-183 64-77 (110)
147 3n71_A Histone lysine methyltr 26.5 4E+02 0.014 24.9 10.1 109 136-247 363-473 (490)
148 1am9_A Srebp-1A, protein (ster 26.4 1.5E+02 0.0052 21.5 5.8 8 185-192 43-50 (82)
149 4e18_B Catenin alpha-1; four h 26.3 1E+02 0.0034 22.2 4.5 47 173-219 8-55 (59)
150 1deb_A APC protein, adenomatou 26.2 1.7E+02 0.0059 20.6 6.8 41 201-241 12-52 (54)
151 2oxj_A Hybrid alpha/beta pepti 26.2 1.2E+02 0.0043 19.5 4.5 13 175-187 8-20 (34)
152 2qho_B E3 ubiquitin-protein li 26.1 74 0.0025 22.3 3.7 45 34-78 3-47 (53)
153 1ntc_A Protein (nitrogen regul 25.9 18 0.00063 26.4 0.6 26 53-78 50-75 (91)
154 1t6f_A Geminin; coiled-coil, c 25.9 81 0.0028 20.7 3.6 23 166-188 12-34 (37)
155 4ath_A MITF, microphthalmia-as 25.1 2.2E+02 0.0076 21.5 7.1 9 185-193 32-40 (83)
156 1t2k_D Cyclic-AMP-dependent tr 25.1 1.7E+02 0.0057 20.0 8.8 53 184-236 4-59 (61)
157 2wvr_A Geminin; DNA replicatio 25.1 2E+02 0.0069 25.2 7.1 26 166-191 120-145 (209)
158 1wt6_A Myotonin-protein kinase 24.0 2.4E+02 0.0081 21.4 7.2 26 196-224 45-70 (81)
159 1deq_A Fibrinogen (alpha chain 24.0 4.8E+02 0.016 24.9 10.3 76 147-227 51-155 (390)
160 1c1g_A Tropomyosin; contractIl 23.7 2.7E+02 0.0091 21.8 12.4 17 210-226 80-96 (284)
161 1eto_A FIS, factor for inversi 23.6 36 0.0012 25.8 1.9 26 53-78 57-82 (98)
162 2j5u_A MREC protein; bacterial 23.4 52 0.0018 28.8 3.1 17 166-182 24-40 (255)
163 3c3f_A Alpha/beta peptide with 23.4 1.5E+02 0.0052 19.1 4.5 11 197-207 2-12 (34)
164 2w6a_A ARF GTPase-activating p 23.0 2.2E+02 0.0075 20.6 7.1 45 186-233 17-61 (63)
165 3efg_A Protein SLYX homolog; x 22.8 1.6E+02 0.0055 21.6 5.3 36 206-241 28-63 (78)
166 1olm_A SEC14-like protein 2; l 22.8 63 0.0022 29.1 3.7 29 51-79 30-58 (403)
167 2v71_A Nuclear distribution pr 22.5 3.7E+02 0.013 23.0 11.6 28 213-240 88-115 (189)
168 2bni_A General control protein 22.3 1.5E+02 0.0051 19.2 4.3 12 197-208 2-13 (34)
169 1r5l_A Alpha-TTP, protein (alp 22.3 71 0.0024 26.5 3.7 27 53-79 30-56 (262)
170 3v6i_A V-type ATP synthase sub 22.2 3.1E+02 0.011 22.1 9.3 18 211-228 79-96 (187)
171 3q8t_A Beclin-1; autophagy, AT 22.2 2.6E+02 0.0088 21.1 13.4 72 166-237 16-91 (96)
172 3viq_A SWI5-dependent recombin 22.0 2E+02 0.0068 22.9 6.0 30 166-195 5-34 (122)
173 3nr7_A DNA-binding protein H-N 21.8 2.6E+02 0.0088 21.0 6.8 38 187-224 33-70 (86)
174 4e29_A Chimeric WZZB chain len 21.1 4.3E+02 0.015 23.3 10.0 19 214-235 144-162 (248)
175 4h22_A Leucine-rich repeat fli 21.0 3.1E+02 0.011 21.6 9.9 62 154-225 11-77 (103)
176 2ve8_A FTSK, DNA translocase F 20.9 48 0.0017 24.6 2.0 31 127-157 16-51 (73)
177 2wg5_A General control protein 20.9 99 0.0034 23.8 3.9 31 194-227 5-35 (109)
178 1zxa_A CGMP-dependent protein 20.4 1.5E+02 0.005 21.6 4.5 23 201-223 34-56 (67)
179 3tnu_A Keratin, type I cytoske 20.2 3.1E+02 0.011 21.3 8.3 20 173-192 50-69 (131)
No 1
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=85.54 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=41.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhccc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (254)
+..+++|+.+||+||+++|+.+|++||+|+|+||++|.++...+
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 66799999999999999999999999999999999999998765
No 2
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=99.00 E-value=2.5e-10 Score=82.61 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=41.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhcccc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~sa 85 (254)
+.-+.+|+.+||+||+++|+.+|++|++|+|.||+.|.++...+.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 456899999999999999999999999999999999999887665
No 3
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=97.94 E-value=1.8e-06 Score=61.83 Aligned_cols=39 Identities=33% Similarity=0.578 Sum_probs=30.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
..+..|+.+||+||+++|+.+|+.++.++|+||.+|.++
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 347889999999999999999999999999999998765
No 4
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.70 E-value=2.6e-05 Score=54.58 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
+..|..+||..+...+..+|+.|++|+|.||..|.+.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 6789999999999999999999999999999998774
No 5
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.87 E-value=0.0011 Score=49.77 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
++.|.+++.|||++....+++.|+.+++|++.+|-.|.+
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 667999999999999999999999999999999999987
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.32 E-value=0.049 Score=41.72 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 149 RILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 149 RvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
-+|+-+|.=|-+..-. + ++.|...||++-..|..||.-++.- .+...+|.++||+-...+|++|+.|
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~----------~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ----------REELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777765555 4 8999999999999999998876542 2567789999999999999999987
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.70 E-value=0.62 Score=40.43 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQhe-R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
..+=+.-|+.++..|..|..-+|.=+.-++. -.+.....+.|+..|+....+++.+||.||+.|.-|----|.+
T Consensus 54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334455666666666666666654444332 2334556678999999999999999999999999886655543
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=94.23 E-value=0.065 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.5
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (254)
..|.+|..+ +.++....+||..|++|++.||..|
T Consensus 6 ~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357889988 8999999999999999999999876
No 9
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.09 E-value=0.06 Score=40.11 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..| +.++..+.+||..|++|++.|+..|..
T Consensus 30 ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5568899988 789999999999999999999998876
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.82 E-value=0.61 Score=37.44 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQHE-RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQhe-R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
+.-|+....+|..|.--+|.=+.-++. -.+..-..+.|+.+|+.....|+.+||.||+.|.-|----|-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 345777777777777777766554432 233445567999999999999999999999999988655443
No 11
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.78 E-value=0.33 Score=34.87 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=40.8
Q ss_pred CCCcccccCCCCCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhh
Q 025362 23 SAKRSRCSTFGSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRV 79 (254)
Q Consensus 23 ~sKR~Rcsss~sp~r~~~~~~v~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~ 79 (254)
++||.+-.... ....+..|.+|..| ++++....+||..|+| |++.|+.-|.+
T Consensus 5 ~~~r~~t~~ya---~~~~e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 5 SSGRNRQQRPG---TIKHGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCSCCSCCSSC---SSSCCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred Cccchhhhccc---ccCCHHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 36776544332 22346789999998 7888999999999998 99999999876
No 12
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.68 E-value=0.081 Score=39.97 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=34.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+++.|+..||.+...||...+-+.++++|+.|..|..
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4899999999999999999999999999999999976
No 13
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.64 E-value=0.16 Score=35.08 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=32.4
Q ss_pred CCcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~~l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM--GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3458999998 78 9999999999999999999998854
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.088 Score=37.48 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..| +.++....+||..|+||++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5668999998 667899999999999999999999987
No 15
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.38 E-value=0.15 Score=35.30 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=31.8
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.-|.+|..| +. |.+...+||..||+|++.||..|..
T Consensus 13 ~~l~~L~~M--GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 13 QQLEQLNSM--GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTT--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 347888888 67 8999999999999999999999875
No 16
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.36 E-value=0.14 Score=38.31 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=31.4
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.-|.+|..| ++ |.+...+||..+++|++.||..|..
T Consensus 31 ~qi~qL~eM--GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL--GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357888888 54 7889999999999999999999986
No 17
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.96 E-value=0.2 Score=32.74 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=30.7
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
..|.+|..+ +.++....+||..|++|++.|+.-|-+
T Consensus 6 ~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 457788887 678899999999999999999988754
No 18
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=91.44 E-value=0.19 Score=36.78 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=32.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
...|..||.. -+..-.--.+||++|++||+.||.-|..--
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4568888886 345556678999999999999999998743
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.39 E-value=0.23 Score=35.73 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..| +++.....+||..|++|++.|+.-|..
T Consensus 10 ~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568889888 788999999999999999999999876
No 20
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.24 E-value=0.22 Score=34.76 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.6
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 42 ~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~L 80 (254)
.-|.+|..| +. |.+...+||..|++|++.||..|...
T Consensus 11 ~~l~~L~~M--GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM--GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 458899988 56 66778999999999999999999874
No 21
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=90.75 E-value=0.31 Score=32.91 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.0
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.-|.+|..+ +. |.+...+||..+++|++.||..|..
T Consensus 9 ~~i~~L~~M--GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 347888887 44 7888899999999999999998853
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.21 E-value=0.28 Score=33.37 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..+ +.++....+||..|+||++.|+.-|..
T Consensus 9 ~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3457888888 789999999999999999999998865
No 23
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.13 E-value=0.31 Score=35.07 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
++.+++++.+||+++...+..=|+..| +++..|..+.+=+|
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 14 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 567899999999999999999999999 99999998876554
No 24
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.83 E-value=0.41 Score=38.08 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.9
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
-|..|..+ .++++.-...||++|++||..||..|.+
T Consensus 42 kVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 42 KVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46777777 6889999999999999999999999986
No 25
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=88.07 E-value=0.54 Score=33.40 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.9
Q ss_pred CcHHHHHhcCCCC-CHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDV-DPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~m-d~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.-|.+|..| +. |.+...+||..+++|++.||..|..
T Consensus 19 ~qi~~L~~M--GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 19 HQLRQLNDM--GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHH--TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 357889888 44 7888999999999999999999865
No 26
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=87.66 E-value=0.41 Score=34.53 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
++.+++++.+||+++...+..-|+..| +++..|..+.+
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rTg-SVe~TienILe 55 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHC-CHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 456899999999999999999999985 89999987754
No 27
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.95 E-value=1.3 Score=31.61 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcc-hhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHD-NKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cg-ndlDaAIksL~~ 79 (254)
+..|.+|..| +.+....++||..|| +|++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 5778999998 777899999999994 899999999987
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.71 E-value=7.6 Score=31.67 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=64.0
Q ss_pred CChhhhHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025362 121 TDGSKWVDLFVHEMMSA---ADLDDARGRAARILEVFERSIITNSKAS-----KELEHASLKEHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 121 ~~g~eWVel~V~EM~~A---sd~dDAr~RAsRvLEafEksi~~r~~aa-----~~~E~~~lKeql~~l~~eN~iLKRAv~ 192 (254)
..-+..|+-=++||... ..+++- -.+|.+.-.-+ .++++..|.++++.+.+|..-||-=+.
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~-----------r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAE-----------LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777754 333333 23444433331 777888899999999888888886433
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 193 IQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 193 IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
--.. .+++..+|+..|+.-+...|+++..||..+
T Consensus 100 ~~~~---k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 100 AAQI---KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 446677888888888888899998888653
No 29
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.34 E-value=0.84 Score=33.16 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=37.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
++.+++++.+||++....+..=|+..| +++..|..+.+=++
T Consensus 14 ~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~ 54 (61)
T 2ekf_A 14 ATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV 54 (61)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC
Confidence 566899999999999999999999999 99999999887565
No 30
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.83 E-value=1.6 Score=31.34 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=34.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (254)
+..|.+|..| ++++....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999997 7888999999999999 999999999873
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.62 E-value=7.3 Score=36.62 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q 025362 167 ELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQES 242 (254)
Q Consensus 167 ~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~ 242 (254)
.++...++++.+.+.+++..+++++. +.+++++...+|+..+++.+...++++..|.+.|-.++--+++-.+.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEAD---AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhh---hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555566666555542 23456666678888899999999999999999999998777776663
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=82.61 E-value=1.3 Score=33.66 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..| ++++..+.+||..|++|++-|+.-|..
T Consensus 30 ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999999 789999999999999999999999987
No 33
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.51 E-value=1.2 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..+ +.++....+||..|| |++.|+.-|.+
T Consensus 10 ~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4568888887 566789999999997 89999998854
No 34
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=81.65 E-value=0.85 Score=30.83 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.7
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.|..|..| +.++..+.+||.+||+|.+.|..-|-.
T Consensus 7 aI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKAL--GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46667777 788999999999999999999988754
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.37 E-value=4.9 Score=27.32 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
|+|.+..+++. ..++..++|.||+..|+-|+--|+
T Consensus 7 eLE~r~k~le~---~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLEN---KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 55555554444 888889999999999999987654
No 36
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=80.77 E-value=7.4 Score=27.85 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=24.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025362 155 ERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSI 193 (254)
Q Consensus 155 Eksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~I 193 (254)
|||+..-+-+ ||-|+..|.+||.-||+++--
T Consensus 5 EKSlVDtVYa--------LkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 5 SKSLVDTVYA--------LKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776 888888888899988888753
No 37
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=79.80 E-value=4.7 Score=30.63 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=34.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 196 ERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 196 eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
+|.+.+.+.-.|..+|.+.+.+.++.|.+|+..|--|.--+.+++
T Consensus 24 ~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 24 QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777788888888888888888888888877766665554
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.75 E-value=1.9 Score=31.69 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (254)
+..|.+|..| ++++....+||..||| |++.|+.-|.+.
T Consensus 10 e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 10 ESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999998 7788999999999997 899999999883
No 39
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=79.65 E-value=2.1 Score=31.40 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.1
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..+ +.++....+||..|+||++.|+.-|.+
T Consensus 30 ~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5668999988 678999999999999999999998876
No 40
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=79.16 E-value=1.5 Score=32.23 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=30.5
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 43 ~v~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
-|.+|+.| | .|.+...+||.+|++|++.||..|...
T Consensus 22 ql~qL~~MGF--~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGF--VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47777776 3 578888999999999999999999873
No 41
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=78.86 E-value=3.2 Score=27.39 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
.+++.|..-++-|=++||.||+.|-.|...+.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999999998876654
No 42
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.66 E-value=2.5 Score=31.99 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhcc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFS 83 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~ 83 (254)
+..|.+|..| +++++..++||..|++|++.|+.-|-+...+
T Consensus 22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 4568889998 7788999999999999999999999885443
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.47 E-value=37 Score=35.84 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
+++|+..|+++++.+.+|+..|+....--.++.+ .......|++.|+|.+++-...+.+.+.
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888887777655321111111 1112334555555555555555554443
No 44
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=75.70 E-value=5.6 Score=30.41 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQ 221 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEq 221 (254)
+......|..||..|+.=|. ....|++.|++++.|..++
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~----------~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCcHH
Confidence 44455566666666654332 2345666666666665544
No 45
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.32 E-value=3.5 Score=31.04 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..| +++.....+||..|++|++.|+.-|.+
T Consensus 30 e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 30 EAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5668999998 788899999999999999999999987
No 46
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.33 E-value=17 Score=27.48 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=32.6
Q ss_pred HHHHHHHhhHHHH---HHHHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 175 EHLQSLLNDNQIL---KKAVSIQH--------ERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 175 eql~~l~~eN~iL---KRAv~IQh--------eR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.+++.|+.||.=| |.|+.|.- +-..|++....|+..+++.....+++|+.||.
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666554 45555543 33446677778888888888888888888875
No 47
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=71.19 E-value=44 Score=32.43 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
++.|...|+.+...+.++.+-+|+ ...+.++...|+..||..+...+++++.+|..-+.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443 12244556667777777777777777777665443
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.60 E-value=8.7 Score=29.34 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~ 192 (254)
+.+||..|+.+++.|..|...||..|.
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998887664
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.31 E-value=5.3 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+.+||..|+.+++.|..|...||.
T Consensus 48 L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 48 LTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.20 E-value=7.2 Score=29.78 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 207 EVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 207 E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
+++.|.--++-|=++||.||+.|-.|...+++-++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778889999999999999999999888776554
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.20 E-value=10 Score=27.69 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 185 QILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 224 (254)
Q Consensus 185 ~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~ 224 (254)
.||+.|+..=..-+.+.+....|+..|++...+.+.+|..
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777643333333333334444444444444444433
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.80 E-value=8.7 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
+..||..|+.++..|..||..||
T Consensus 48 l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666666666665553
No 53
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=67.77 E-value=51 Score=27.21 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 144 RGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQAR 223 (254)
Q Consensus 144 r~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir 223 (254)
|..+.++++.||.++.- +..-|..|..+++.=.+=...|..+...|.+. +.+.+..+..|++++.
T Consensus 67 k~~~e~l~~~veeA~~~-----L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~----------l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 67 KEAAERLSKTVDEACLL-----LAEYNGRLAAELEDRRQLARMLVEYTQNQKDV----------LSEKEKKLEEYKQKLA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 55667777777776654 44444444444444333344555555544432 2333344555555555
Q ss_pred HHHhhhHHHHHHH
Q 025362 224 NLELRNYALKLHL 236 (254)
Q Consensus 224 ~LE~~NYaL~~HL 236 (254)
++..-.==|.-|+
T Consensus 132 rv~~vkkeL~~hi 144 (152)
T 4fla_A 132 RVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5444444444444
No 54
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.65 E-value=6.4 Score=29.93 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=37.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
..++.+|+.|----|+++|..||.++..||..|+--|.+=+
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 45789999999999999999999999999999999998843
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.44 E-value=6.7 Score=27.87 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
-..+...|..+++.|..+|.-|+.=+ +....|++.||+++.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i----------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA----------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 34456666667777777777666433 223466667776664
No 56
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=67.44 E-value=5.3 Score=31.37 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+..|.+|..+ +.++....+||..||||++.|+.-|..
T Consensus 79 e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5678999988 778999999999999999999999976
No 57
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=66.83 E-value=40 Score=31.62 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 245 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 245 (254)
+.++...++.+++.|..+.+.+-+.+.. +.+ .+.+.|+..+.+..++|+.||..-+.+.--|..... .+
T Consensus 33 ~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i 101 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTERNQVAKRVPK---APP------EEKEALIARGKALGEEAKRLEEALREKEARLEALLL--QV 101 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hC
Confidence 5556677777778887777777777654 221 123344555555556666666666665555554332 36
Q ss_pred CCCCCCCC
Q 025362 246 PRQFHPDI 253 (254)
Q Consensus 246 ~g~~~PDV 253 (254)
|-.-||||
T Consensus 102 pN~~~~~v 109 (421)
T 1ses_A 102 PLPPWPGA 109 (421)
T ss_dssp CCCCCTTS
T ss_pred CCCCCCCC
Confidence 66666665
No 58
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.23 E-value=8.5 Score=25.05 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025362 205 EKEVELLKLVISQYQDQARNLE 226 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE 226 (254)
++++.+||..-...++|||+||
T Consensus 13 qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHhcC
Confidence 3555566666666677777776
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.74 E-value=41 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 025362 168 LEHASLKEHLQSLLNDNQILKKAVSIQHERH 198 (254)
Q Consensus 168 ~E~~~lKeql~~l~~eN~iLKRAv~IQheR~ 198 (254)
++....+++++.+.+|+.-|++-+..+-++.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 3333444444445555555555444444333
No 60
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=65.37 E-value=4.6 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=30.4
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+.-|.+|+.|= -.|.+...+||..|+.|++.||..|..
T Consensus 67 ~~qL~qL~eMG-F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMG-IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33577788761 136788999999999999999999976
No 61
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=65.31 E-value=26 Score=26.84 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLK 188 (254)
||+-|.++++.+-.|+..||
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444
No 62
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.84 E-value=70 Score=30.38 Aligned_cols=79 Identities=9% Similarity=0.168 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSI 245 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~ 245 (254)
+.++...++.+++.|..+.+.+-+.+..--....+.++...|+..||..+...+++++.+|. -|.... ..+
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~i 106 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK-------KIDYYL--WRL 106 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HhC
Confidence 44455555556666665555555555421111123344445555555555555555555544 443332 235
Q ss_pred CCCCCCCC
Q 025362 246 PRQFHPDI 253 (254)
Q Consensus 246 ~g~~~PDV 253 (254)
|-.-||||
T Consensus 107 pN~~~~~v 114 (455)
T 2dq0_A 107 PNITHPSV 114 (455)
T ss_dssp CCCCCTTS
T ss_pred CCCCCccC
Confidence 66666665
No 63
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=64.63 E-value=5.2 Score=31.81 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=28.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.|..|..+ +.+...+.+||..|+||+|.|+.-|-.
T Consensus 79 ~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666665 578899999999999999999998754
No 64
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=62.77 E-value=25 Score=26.95 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 197 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 197 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
|++.+++.-+|..+|.+.+.+-++.|.+|...|--|.
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666666666666555443
No 65
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=60.03 E-value=4.5 Score=35.19 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHhhcchhHHHHHHHHhhhhcccc
Q 025362 59 VKSVLGEHDNKIEDAIDRLRVLSFSNI 85 (254)
Q Consensus 59 le~aLe~cgndlDaAIksL~~L~L~sa 85 (254)
-.+||++|++|+|.||+-|..--+..+
T Consensus 21 CKkAL~e~~GD~ekAie~LR~kG~akA 47 (196)
T 1aip_C 21 VKRALEDAGWDEEKAVQLLRERGAMKA 47 (196)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCchh
Confidence 579999999999999999998544443
No 66
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.73 E-value=21 Score=27.32 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 198 HLEQEQKEKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 198 ~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
++.+++.-.|..+|.+.+.+-+|.|.+|...|--|
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 67
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=59.50 E-value=26 Score=30.82 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH
Q 025362 167 ELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 167 ~~E~~~lKeql~~l~~eN~iLK 188 (254)
=+||+-|.++++.+-.|+..||
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666555
No 68
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.01 E-value=44 Score=23.52 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKA 190 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRA 190 (254)
+.+||..|+.++..|.+|+..||.-
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666543
No 69
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.80 E-value=7.1 Score=34.35 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025362 183 DNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 215 (254)
Q Consensus 183 eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 215 (254)
||.-||+=++....+..+++...+|+++||+++
T Consensus 27 eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 27 ENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444455556666666654
No 70
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=57.52 E-value=5.1 Score=36.53 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHHhhcchhHHHHHHHHhh
Q 025362 58 VVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~ 79 (254)
--.+||++|++|+|.||+-|..
T Consensus 21 dCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 21 NCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3579999999999999999986
No 71
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.15 E-value=6.9 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=27.8
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.|+.|-.| +..++...+||.+|||||+.|..-|-.
T Consensus 22 ~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 22 CVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35555554 466788999999999999999998876
No 72
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=55.38 E-value=12 Score=26.31 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=32.9
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
+-|++|-.+ +.|++-+.+||..++||+|-|.--|.+..+
T Consensus 13 ~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLlef~~ 51 (52)
T 2ooa_A 13 AKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILREFAF 51 (52)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 447777776 789999999999999999999988887643
No 73
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=55.18 E-value=9.1 Score=24.67 Aligned_cols=36 Identities=6% Similarity=0.093 Sum_probs=28.7
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+|.++..+ -+.++..-...|+.|+.||+.||..+.+
T Consensus 8 ~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 8 ALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35555554 4678999999999999999999987754
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.58 E-value=95 Score=26.02 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 197 RHLEQEQKEKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 197 R~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
+.+..+..+.|+..|+-.+..-+++++.|+.-|--|
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555777777777888888888888866433
No 75
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.87 E-value=52 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
++.||.+|.++++....|+.-|++
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777776644444444433
No 76
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.56 E-value=12 Score=26.35 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=29.8
Q ss_pred cHHHHHhc-CCCCCHHHHHHHHhhcchhHHHHHHHHhhhh
Q 025362 43 PVSFLLQM-FPDVDPEVVKSVLGEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 43 ~v~~L~~l-FP~md~q~le~aLe~cgndlDaAIksL~~L~ 81 (254)
.+.+|..+ | .|.+.-.++|..+|.||+.||..|..+.
T Consensus 12 ~L~~L~eMGF--~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGF--CDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCC--CcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 45666665 3 2788999999999999999999998753
No 77
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=52.52 E-value=9.9 Score=29.66 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHH
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRL 77 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL 77 (254)
++.+..- .+.+..-..+||++|++||=.||..|
T Consensus 69 i~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 69 IELVMNQ-TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3334333 36667778899999999999999876
No 78
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.52 E-value=16 Score=27.29 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (254)
+..|.+|..| ++++....+||..++| |++.|+.-|...
T Consensus 30 e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 30 EEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5678999998 7888999999999974 999999999873
No 79
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.97 E-value=56 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKR 189 (254)
....|..+++.|..+|.-|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666665553
No 80
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.86 E-value=14 Score=27.54 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQ 217 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~q 217 (254)
...+.+....|..||..|+.=|. ....|+..||+++.|
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~----------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVE----------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 34566778888888888886543 345777777776654
No 81
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=51.50 E-value=15 Score=25.82 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
=+|-.+-=++.|+++|=|++.|++.+.+|.-
T Consensus 18 Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 18 SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4688888999999999999999999999864
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=51.29 E-value=13 Score=28.19 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
.||.-||..+....+++..||..|.-|+-+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3667788888888889999999998888764
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.82 E-value=1.1e+02 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 204 KEKEVELLKLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
.+.|...+++....+|+++..|+..|--|..-++..
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 445555677889999999999999888777666544
No 84
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=50.74 E-value=51 Score=23.88 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHhh
Q 025362 173 LKEHLQSLLNDNQILKKAVS-IQHERH 198 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~-IQheR~ 198 (254)
||-++..|.+||.-+|+.+. +||.|.
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk 38 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARK 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888887774 555443
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.78 E-value=88 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025362 204 KEKEVELLKLVISQYQDQAR 223 (254)
Q Consensus 204 ~~~E~~~Lkql~~qyqEqir 223 (254)
...++..++..+..|++++.
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666654
No 86
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.36 E-value=1.3e+02 Score=31.73 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=6.9
Q ss_pred CCHHHHHHHHhhcc
Q 025362 54 VDPEVVKSVLGEHD 67 (254)
Q Consensus 54 md~q~le~aLe~cg 67 (254)
+|..+|-.=|.-||
T Consensus 695 fd~~~V~~QLr~~G 708 (1184)
T 1i84_S 695 LDAHLVLEQLRCNG 708 (1184)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhhcC
Confidence 44445555555444
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.23 E-value=19 Score=24.95 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
++.||..||.+++.|..++.-||+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777776
No 88
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.94 E-value=18 Score=25.58 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=31.0
Q ss_pred cHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 43 PVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 43 ~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
-+.+|-.+ +.|++-+.+||..++||+|.|.--|.+.
T Consensus 12 ~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 12 EIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 36777776 7899999999999999999999888764
No 89
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=48.81 E-value=13 Score=29.58 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
..+|.+|..+ +.....+.+||.+||||++.|+.-|...
T Consensus 9 ~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 9 RQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3457777776 5567899999999999999999999875
No 90
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.38 E-value=29 Score=21.99 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+++|...||.++..|.-|..-||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555555555555555554443
No 91
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=48.31 E-value=19 Score=22.87 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKR 189 (254)
|...||+++..|.+|..-||=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888777774
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=48.04 E-value=1.9e+02 Score=27.90 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCCC
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPDI 253 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 253 (254)
++...|+..||..+...+++++.+|..-+.+ . ..+|-.-||||
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~-------l--~~iPN~~~~~v 161 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLR-------A--LRLPNQTHPDV 161 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--TTSCCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HhCCCCCCCCC
Confidence 3444555566666666666665555544432 2 23555556655
No 93
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.80 E-value=90 Score=32.91 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=8.4
Q ss_pred CCHHHHHHHHhhcc
Q 025362 54 VDPEVVKSVLGEHD 67 (254)
Q Consensus 54 md~q~le~aLe~cg 67 (254)
+|..+|-.=|.-||
T Consensus 673 fd~~~V~~QLr~~G 686 (1080)
T 2dfs_A 673 FDEKRAVQQLRACG 686 (1080)
T ss_dssp CCHHHHHHHHHTTT
T ss_pred cCHHhhHHHHhhcc
Confidence 45666666666655
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.55 E-value=96 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025362 167 ELEHASLKEHLQSLLNDNQILKKAVSI 193 (254)
Q Consensus 167 ~~E~~~lKeql~~l~~eN~iLKRAv~I 193 (254)
..+...|++.++.|-+||.=|++=+.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777766655443
No 95
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.90 E-value=64 Score=24.05 Aligned_cols=8 Identities=63% Similarity=0.684 Sum_probs=5.9
Q ss_pred HHHHHHHH
Q 025362 185 QILKKAVS 192 (254)
Q Consensus 185 ~iLKRAv~ 192 (254)
.||++|+.
T Consensus 45 ~iL~~A~~ 52 (88)
T 1nkp_A 45 VILKKATA 52 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67888775
No 96
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.83 E-value=79 Score=22.27 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv 191 (254)
|-.|++.|.+||..|+|-+
T Consensus 8 L~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 4557777777777776644
No 97
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.66 E-value=2.4e+02 Score=27.73 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025362 143 ARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQA 222 (254)
Q Consensus 143 Ar~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqi 222 (254)
.+..=+.+-+++|+.+.+ ++.+|+.+|.+.+++.+.|.-.|-...- +++.-++++...++-++.|+.++
T Consensus 21 vqkana~aka~Ye~~~ae-----~~a~n~~i~aeNeaikkrNa~aka~Ye~------~l~kY~~dlakY~~~~AeY~~kl 89 (497)
T 3iox_A 21 VQKANADAKAAYEAAVAA-----NNAANAALTAENTAIKKRNADAKADYEA------KLAKYQADLAKYQKDLADYPVKL 89 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566777777766 4445555555555555556555443322 11222344555555566666655
Q ss_pred HHHHh
Q 025362 223 RNLEL 227 (254)
Q Consensus 223 r~LE~ 227 (254)
.+-|.
T Consensus 90 ~aYe~ 94 (497)
T 3iox_A 90 KAYED 94 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 98
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=44.61 E-value=52 Score=25.47 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh
Q 025362 214 VISQYQDQARNLELR 228 (254)
Q Consensus 214 l~~qyqEqir~LE~~ 228 (254)
+-.+|+|.|.+|-..
T Consensus 69 mKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLG 83 (92)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888887543
No 99
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.06 E-value=36 Score=23.65 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 025362 169 EHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLK 188 (254)
....|...++.|..+|.-|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 100
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.89 E-value=4.8 Score=33.11 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhccc
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSN 84 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L~s 84 (254)
..++-+|+.|==-=|+++|..||.+|..||.-|+--|++=+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 66889999998888999999999999999999999998854433
No 101
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.91 E-value=83 Score=21.93 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVIS 216 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~ 216 (254)
-+.....|..+.+.|..+|.-|+.-+ .....|+.+|++++.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei----------~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI----------ANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 34456667777777777777776543 234466666666653
No 102
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.79 E-value=24 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
+.|.+-+.+||.-+.||++.|-.-|.+.
T Consensus 15 Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 6789999999999999999999888764
No 103
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.49 E-value=85 Score=22.46 Aligned_cols=37 Identities=35% Similarity=0.413 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 025362 176 HLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVI 215 (254)
Q Consensus 176 ql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~ 215 (254)
|+.+|..-|.-| |-.|||- ...+-++.||...|..++
T Consensus 12 q~~kLKq~n~~L--~~kv~~L-e~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 12 QLLRLKQMNVQL--AAKIQHL-EFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444555544433 2334442 222334445555554444
No 104
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.70 E-value=6.7 Score=26.93 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.+..++|..+|+.||.++..|.+.|.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45788999999999999998888764
No 105
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.59 E-value=1.5e+02 Score=29.62 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHhhcchhHHHHHHHHhhhhcccccccccccCCCccccCCCcchhhhhhccCCCCCccCCChhhhHHHHHHHHhcC
Q 025362 58 VVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGSQMSEEEVRSAHTNFCGENITDGSKWVDLFVHEMMSA 137 (254)
Q Consensus 58 ~le~aLe~cgndlDaAIksL~~L~L~sa~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~g~eWVel~V~EM~~A 137 (254)
.|...|.+-+-||..-|.-|++..-.- +.+ ..+-..|+..++.++-
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl-sKn-------------------------------sKdseqy~k~~~E~Lr-- 95 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY-QKN-------------------------------NKDSHSLTTNIMEILR-- 95 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHH-------------------------------HHHHHHHHHHHHHTTS--
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH-Hhh-------------------------------chhHHHHHHHHHHHHH--
Confidence 477888888999999999998843322 211 1345667766665552
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Q 025362 138 ADLDDARGRAARILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQ 203 (254)
Q Consensus 138 sd~dDAr~RAsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~ 203 (254)
.|....- ..+-.+.+-+.. |.+-+..||+.|..-+...++|+..|.-|+.-+|-+|.
T Consensus 96 -------~rq~q~~-dNdNtynE~S~E-LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 96 -------GDFSSAN-NRDNTYNRVSED-LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp -------SHHHHHH-HHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHhhh-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333322 344444443333 77777778999988888889999999999877776663
No 106
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.43 E-value=58 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025362 206 KEVELLKLVISQYQDQARNLELRN 229 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~N 229 (254)
.++..|.-+|...|+++.+||..-
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778889999999999999764
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=40.41 E-value=1.4e+02 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025362 213 LVISQYQDQARNLELRN 229 (254)
Q Consensus 213 ql~~qyqEqir~LE~~N 229 (254)
.-..+|++|++.|...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34566777777776655
No 108
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.31 E-value=68 Score=23.56 Aligned_cols=8 Identities=38% Similarity=0.372 Sum_probs=5.7
Q ss_pred HHHHHHHH
Q 025362 185 QILKKAVS 192 (254)
Q Consensus 185 ~iLKRAv~ 192 (254)
.||++|..
T Consensus 40 ~iL~kA~~ 47 (80)
T 1nlw_A 40 SLLTKAKL 47 (80)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777765
No 109
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.00 E-value=51 Score=22.77 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
|++...+|++.||+.+..-.+++..|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444444
No 110
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=39.22 E-value=74 Score=20.91 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 025362 205 EKEVELLKLVISQYQDQARNLELRNYAL 232 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~~NYaL 232 (254)
-+|..+|-.-+.|-+|+|.+|...|--|
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566677777777788888887777654
No 111
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=38.75 E-value=32 Score=28.89 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
|..|..+ +.|+.-+..||..|++|++.|+..|-.
T Consensus 167 V~~l~~M--Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 167 IENLCAM--GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4445554 778888999999999999999988753
No 112
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.18 E-value=29 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
+++|.++..+ -+.++..-..+|+.++.||+.||..+.+
T Consensus 16 ~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 16 KGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777765 5788999999999999999999988765
No 113
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.97 E-value=31 Score=24.64 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.++.++..+ -+-++..-..+|+.++.||+.||..+.+
T Consensus 19 ~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456666665 5789999999999999999999998865
No 114
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=37.78 E-value=10 Score=32.25 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=43.1
Q ss_pred ccccccccccCCCCC-CCC---CCcccccCCCCCCC----------------CCCCCcHHHHHhcCCC--CCHHHHHHHH
Q 025362 6 CGKRVGFEEICGSSS-PTS---AKRSRCSTFGSLVR----------------SGSDDPVSFLLQMFPD--VDPEVVKSVL 63 (254)
Q Consensus 6 cGkrs~fedl~~s~~-p~~---sKR~Rcsss~sp~r----------------~~~~~~v~~L~~lFP~--md~q~le~aL 63 (254)
+|-=..|++|+|..- |.+ --|.||.++ |++- .++++|-+.|..+||| +|.+-|++.
T Consensus 24 ~GPv~~F~~LfPa~Y~~~ta~FltR~R~~~~-S~~P~P~~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n~ei~~~- 101 (160)
T 4a5u_A 24 IGPVLPFEELHPRRYPENTATFLTRLRSLPS-NHLPQPTLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSNEETNTL- 101 (160)
T ss_dssp EEEEEEHHHHSCCCCCTTSSCSEEEEECSCC-CCCCCCSSCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSSHHHHHH-
T ss_pred cCccccHHhhCCcccCCCCccccccccCCCC-CCCCCcchhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCchhhhhc-
Confidence 454457889887642 222 279999776 4332 3337788889999998 566555432
Q ss_pred hhcchhHHHHHHHHhhhh
Q 025362 64 GEHDNKIEDAIDRLRVLS 81 (254)
Q Consensus 64 e~cgndlDaAIksL~~L~ 81 (254)
. -.-|.=.|.-....++
T Consensus 102 G-LSTDhltaLa~~~~~~ 118 (160)
T 4a5u_A 102 G-LSTEHLTALAHLYNFQ 118 (160)
T ss_dssp C-CCHHHHHHHHHHHTEE
T ss_pred C-CcHHHHHHHHHHHheE
Confidence 1 1124445555555543
No 115
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.29 E-value=97 Score=26.87 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 177 LQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 177 l~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
+..|..||..|..-+. .|..|.+....+++.||.-...++.++...
T Consensus 22 V~~L~~En~~L~~ql~---~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 22 VANLVNENFVLSEKLD---TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 5678888888877665 345555555666777777777777666543
No 116
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.39 E-value=38 Score=31.74 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 169 EHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 169 E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
+...++.+++.|..+.+.+-+.+..--....+.++...|+..||..+....++++.+|..-+.
T Consensus 38 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 38 RRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433100001123333455666666666666666666654443
No 117
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=36.32 E-value=60 Score=28.34 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 199 LEQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 199 ~e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
++++....++...+..+...+.+++.++..
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666666655543
No 118
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.87 E-value=16 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 54 VDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 54 md~q~le~aLe~cgndlDaAIksL~ 78 (254)
++.++|+.+|+.||.++..|.+.|.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 4678999999999999999988764
No 119
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.86 E-value=41 Score=21.82 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+.++|...++.++.|.++|.+|.-
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHH
Confidence 456777788888888888888853
No 120
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.01 E-value=1.8e+02 Score=23.55 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 201 QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
.++..-|+..|+|.+-..-+.|.+|-..|-.|..|..-..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 4555578888999999999999999999999999876443
No 121
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=34.98 E-value=35 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
++..|+..|-+.|.+|..|++.|.+.|.+.
T Consensus 87 ~~~~dD~~LlRFLRarkfdv~kA~~~L~~~ 116 (316)
T 3hx3_A 87 VQEKDSGFFLRFIRARKFNVGRAYELLRGY 116 (316)
T ss_dssp TTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578899999999999999999999998773
No 122
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=34.89 E-value=39 Score=29.05 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHhc------CCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 44 VSFLLQM------FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 44 v~~L~~l------FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
|.+|+.. -+.+|+..|-+.|.+|..|++.|.+.|.+
T Consensus 34 l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 34 LAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp HHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555543 34589999999999999999999999976
No 123
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.86 E-value=2.2e+02 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025362 202 EQKEKEVELLKLVISQYQDQARNLELRNYA 231 (254)
Q Consensus 202 e~~~~E~~~Lkql~~qyqEqir~LE~~NYa 231 (254)
+.+.+.++.|+..|..--.+|++||+..-+
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467778888888888899999986543
No 124
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.32 E-value=1.8e+02 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
|+-+|++|.++...+.+..-.= +++=.-+..+|+.+ +...|...+..+|.
T Consensus 37 L~~ELeRLr~~~d~~~K~HE~k--klqLkse~e~E~ae---~k~KYD~~lqe~es 86 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFEEK--KSILKAELERKMAE---VQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6667777777777776654321 22222234466666 44566666666663
No 125
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.28 E-value=37 Score=24.23 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=32.6
Q ss_pred CCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 41 DDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 41 ~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
..+|.++..+=---|+..-..+|+.++-||+.||..+.+
T Consensus 19 ~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456777777655478999999999999999999998876
No 126
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=34.05 E-value=42 Score=28.43 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.-|..|..| +.|+..+-.||..|+.|.+.|+..|-+
T Consensus 132 eaI~rL~~m--GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 132 QAISRLCEL--GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 447889888 799999999999999999999988865
No 127
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=33.58 E-value=25 Score=27.39 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=29.4
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcch-hHHHHHHHHhhh
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDN-KIEDAIDRLRVL 80 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgn-dlDaAIksL~~L 80 (254)
..|.+|..| +.+....++||..||| |++.|+.-|...
T Consensus 5 ~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAEM--GFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHTT--SSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456666664 4455889999999998 999999999773
No 128
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=32.93 E-value=3.2e+02 Score=26.37 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCCCCCCCC
Q 025362 215 ISQYQDQARNLELRNYALKLHLQRAQESSSIPRQFHPDI 253 (254)
Q Consensus 215 ~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g~~~PDV 253 (254)
+.+-.++|+.||..-..+.-.+.... ..+|-.-||||
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l--~~iPN~~~~~v 149 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM--LNVGNILHESV 149 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCCccC
Confidence 44444555555555554444444322 23566666665
No 129
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.74 E-value=52 Score=29.62 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSL------------LNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 166 ~~~E~~~lKeql~~l------------~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
+++|...|.+++... +++-..--+.+.+|+++. ..+++.+++.+.+++++|.+|
T Consensus 29 ~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L------~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 29 LRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKL------METLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTTHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
No 130
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=32.61 E-value=29 Score=23.40 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=25.1
Q ss_pred CcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHH
Q 025362 42 DPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDR 76 (254)
Q Consensus 42 ~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIks 76 (254)
.+|+++..+==--|+..-..+||.++-||+.|+-+
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 34555555433334588999999999999999854
No 131
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=32.58 E-value=32 Score=24.56 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHhhhhc
Q 025362 44 VSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSF 82 (254)
Q Consensus 44 v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~~L~L 82 (254)
++.|-.+ +.|.+-+.+||.-+.||++.|-.-|.+.-.
T Consensus 11 Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 11 IENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred HHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence 5555554 789999999999999999999998887543
No 132
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=32.48 E-value=32 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHhhcchhHHHHHHHHhhh
Q 025362 52 PDVDPEVVKSVLGEHDNKIEDAIDRLRVL 80 (254)
Q Consensus 52 P~md~q~le~aLe~cgndlDaAIksL~~L 80 (254)
-.|-.+-=++.|+++|=|++.||..+.++
T Consensus 17 T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 17 TKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36788888999999999999999999996
No 133
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=31.31 E-value=3.2 Score=30.16 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSI 193 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~I 193 (254)
..+|+..|+.++..|..||.+||.+..-
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~~~ 91 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESCLE 91 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999987543
No 134
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.58 E-value=1.3e+02 Score=20.62 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 170 HASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 170 ~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
|.-|+..+.+|.++|--|. |- -|.|..+++...+.|-+||-
T Consensus 5 naylrkkiarlkkdnlqle--------rd---------eqnlekiianlrdeiarlen 45 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLE--------RD---------EQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhh--------hh---------HhhHHHHHHHHHHHHHHHHH
Confidence 5567788888888875443 32 23566788888888888874
No 135
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.51 E-value=1.2e+02 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025362 200 EQEQKEKEVELLKLVISQYQDQARNLELR 228 (254)
Q Consensus 200 e~e~~~~E~~~Lkql~~qyqEqir~LE~~ 228 (254)
.++.-.+|...-++.+..||.+++.||..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788888888999999999999864
No 136
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.20 E-value=3.1e+02 Score=24.84 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHH------------------H
Q 025362 150 ILEVFERSIITNSKASKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVEL------------------L 211 (254)
Q Consensus 150 vLEafEksi~~r~~aa~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~------------------L 211 (254)
+-+++++.+.....+ ++-...+.++++.++.++..-+.+-.+++.-++.+++.+.-+.+ |
T Consensus 357 ~~~~~~~vl~G~~t~--eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 357 VRTAVINAASGRQTV--DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025362 212 KLVISQYQDQARNLELRNYALKLHLQRA 239 (254)
Q Consensus 212 kql~~qyqEqir~LE~~NYaL~~HL~qA 239 (254)
...++|-+.+|+.||-..-.|--.|+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 137
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.60 E-value=1.3e+02 Score=20.28 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
++.=|..|.+.+--|.+||..|+..+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 55566778888888888888876543
No 138
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.16 E-value=53 Score=24.80 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 025362 166 KELEHASLKEHLQSLLNDNQ 185 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~ 185 (254)
..+|...||+++..|...|.
T Consensus 13 VREEVevLKe~I~EL~e~~~ 32 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNS 32 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566667777666555443
No 139
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.83 E-value=34 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKK 189 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKR 189 (254)
+|++...+++.+..|..||..||-
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777753
No 140
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.79 E-value=76 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
-+.....|..+++.|..+|.-|+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777776665
No 141
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.60 E-value=70 Score=23.09 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 025362 205 EKEVELLKLVISQYQDQARNLELRNYALKLHLQR 238 (254)
Q Consensus 205 ~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~q 238 (254)
..=+.+|++.+..+++++..|...|..|...|..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777778888888888888777753
No 142
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.63 E-value=1.8e+02 Score=21.52 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQ 219 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyq 219 (254)
|+..+..-..|-.-..--+...-.|. +++..+++.|+-.+++||
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L---~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELEL---DQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
No 143
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.37 E-value=17 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
...++.++|..+|+.|| +...|.+.|.
T Consensus 18 l~~~Er~~I~~aL~~~g-n~~~aA~~LG 44 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEYP-STRKLAQRLG 44 (61)
T ss_dssp CSHHHHHHHHHHHHHSC-SHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHhC
Confidence 34567889999999995 6777776553
No 144
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.00 E-value=3e+02 Score=23.61 Aligned_cols=52 Identities=8% Similarity=0.287 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLN-----DNQILKKAVSIQHERHLEQEQKEKEVELLK-LVISQYQDQARN 224 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~-----eN~iLKRAv~IQheR~~e~e~~~~E~~~Lk-ql~~qyqEqir~ 224 (254)
++.++..|++|++.+++ |+.++++=+.+-|+.. .-+.+|+ +++.+.||.-+.
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK-------~KIR~lq~~Ll~~~~~~~~~ 208 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKK-------TKIRSLHNKLLNAAQEREKD 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHhhhh
Confidence 44555566667766654 6778888888888655 3344444 455555554433
No 145
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.84 E-value=95 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 165 SKELEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 165 a~~~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
++++|....|+++..|..+..-||-.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888877777766665433
No 146
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.75 E-value=29 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q 025362 170 HASLKEHLQSLLND 183 (254)
Q Consensus 170 ~~~lKeql~~l~~e 183 (254)
..+||.|++....+
T Consensus 64 I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 64 VPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 147
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=26.52 E-value=4e+02 Score=24.93 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=56.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhhhhh-h-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025362 136 SAADLDDARGRAARILEVFERSIITNSKA-S-KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKL 213 (254)
Q Consensus 136 ~Asd~dDAr~RAsRvLEafEksi~~r~~a-a-~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkq 213 (254)
.-.+.++|..=..|+|+.+|+..-..--. + .---...+-...+.+..--..++||+.|.-.-.-.-- -.+..++.
T Consensus 363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H---p~~~~~~~ 439 (490)
T 3n71_A 363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH---PITKDLEA 439 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS---HHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 34677777777777887777654332111 1 0001111112223334444678888888654332111 23334456
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC
Q 025362 214 VISQYQDQARNLELRNYALKLHLQRAQESSSIPR 247 (254)
Q Consensus 214 l~~qyqEqir~LE~~NYaL~~HL~qA~~~~~~~g 247 (254)
++.|.+..++..+++-+-+..-...|.++..|..
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 7777777777777766666666666656554443
No 148
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.35 E-value=1.5e+02 Score=21.48 Aligned_cols=8 Identities=38% Similarity=0.783 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 025362 185 QILKKAVS 192 (254)
Q Consensus 185 ~iLKRAv~ 192 (254)
.||+.|+.
T Consensus 43 ~IL~~Ai~ 50 (82)
T 1am9_A 43 AVLRKAID 50 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555553
No 149
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=26.25 E-value=1e+02 Score=22.17 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVSIQHERHL-EQEQKEKEVELLKLVISQYQ 219 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~IQheR~~-e~e~~~~E~~~Lkql~~qyq 219 (254)
|.|+++.++..-.++--+=.-+.+|.+ =+.+.+.-.|-|.-|+++|.
T Consensus 8 Lee~le~Iisgaa~~Ads~~tr~~rke~Iv~eCnavrqALQdLlsEY~ 55 (59)
T 4e18_B 8 LEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666665555555444444444443 24566677777888999996
No 150
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.25 E-value=1.7e+02 Score=20.55 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 201 QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
-|....|..+||+-+..---|+-.||-...-+.--|++.|.
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 34556788899999999999999999888888888887763
No 151
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.17 E-value=1.2e+02 Score=19.54 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=5.7
Q ss_pred HHHHHHHhhHHHH
Q 025362 175 EHLQSLLNDNQIL 187 (254)
Q Consensus 175 eql~~l~~eN~iL 187 (254)
..++.|+.+|..|
T Consensus 8 ~kVEeLl~~n~~L 20 (34)
T 2oxj_A 8 XKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhH
Confidence 3444444444433
No 152
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=26.07 E-value=74 Score=22.34 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=39.4
Q ss_pred CCCCCCCCCcHHHHHhcCCCCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 34 SLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 34 sp~r~~~~~~v~~L~~lFP~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.|.-+-|++++.+-....|+-..+++-+-|+..+=|+.-|+--|.
T Consensus 3 ~p~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlL 47 (53)
T 2qho_B 3 IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLL 47 (53)
T ss_dssp CCGGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CccccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHh
Confidence 345566789999999999999999999999999999999987654
No 153
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.92 E-value=18 Score=26.44 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.++.++|..+|+.||.++..|.+.|.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 45778899999999999888887664
No 154
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=25.88 E-value=81 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILK 188 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLK 188 (254)
+|+|...-.+++.+|..||.-|+
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 55566665666666666665443
No 155
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=25.11 E-value=2.2e+02 Score=21.47 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q 025362 185 QILKKAVSI 193 (254)
Q Consensus 185 ~iLKRAv~I 193 (254)
+|||++|-.
T Consensus 32 ~IL~ksvdY 40 (83)
T 4ath_A 32 TILKASVDY 40 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 789999864
No 156
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.09 E-value=1.7e+02 Score=20.02 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhh--h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 025362 184 NQILKKAVSIQHERHL--E-QEQKEKEVELLKLVISQYQDQARNLELRNYALKLHL 236 (254)
Q Consensus 184 N~iLKRAv~IQheR~~--e-~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL 236 (254)
....++=++-+-.|++ + .++...++..|...-..-+.+|..|+..+..|...|
T Consensus 4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555543 2 223456666666666667777777777776666544
No 157
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.08 E-value=2e+02 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAV 191 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv 191 (254)
||+++..|++++..|..||.-||..+
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998887643
No 158
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.99 E-value=2.4e+02 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=16.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 196 ERHLEQEQKEKEVELLKLVISQYQDQARN 224 (254)
Q Consensus 196 eR~~e~e~~~~E~~~Lkql~~qyqEqir~ 224 (254)
.+.+|++.+++++.+ -+.+-+++++.
T Consensus 45 skL~eae~rn~eL~~---e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEA---HVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 477888888887755 44444444444
No 159
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.95 E-value=4.8e+02 Score=24.88 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH------------------------HhhHHHHHHHHHHHHHhhhhHH
Q 025362 147 AARILEVFERSIITNSKASKELEHASLKEHLQSL------------------------LNDNQILKKAVSIQHERHLEQE 202 (254)
Q Consensus 147 AsRvLEafEksi~~r~~aa~~~E~~~lKeql~~l------------------------~~eN~iLKRAv~IQheR~~e~e 202 (254)
.+|+...+.|.=.. +.+-+.+||+.|..+ .++|......|.-.-+++-+|-
T Consensus 51 GCrLqg~Ldk~er~-----~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~l 125 (390)
T 1deq_A 51 GCRMKGLIDEVDQD-----FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEIL 125 (390)
T ss_pred cchHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHh
Q 025362 203 QKE-----KEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 203 ~~~-----~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.++ +.++.|+..|..---+|++||+
T Consensus 126 k~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 126 RRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 160
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=23.66 E-value=2.7e+02 Score=21.84 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025362 210 LLKLVISQYQDQARNLE 226 (254)
Q Consensus 210 ~Lkql~~qyqEqir~LE 226 (254)
.+..-+...++++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFE 96 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 161
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=23.59 E-value=36 Score=25.79 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLR 78 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~ 78 (254)
.++.++|+.+|+.||.++..|.+.|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 35678899999999999999988764
No 162
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.39 E-value=52 Score=28.80 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHHh
Q 025362 166 KELEHASLKEHLQSLLN 182 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~ 182 (254)
+++||..||+++..|..
T Consensus 24 l~~eN~~Lk~e~~~l~~ 40 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQ 40 (255)
T ss_dssp --CTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555544444433
No 163
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.36 E-value=1.5e+02 Score=19.13 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=4.5
Q ss_pred hhhhHHHHHHH
Q 025362 197 RHLEQEQKEKE 207 (254)
Q Consensus 197 R~~e~e~~~~E 207 (254)
|++.+|+++.|
T Consensus 2 RMnQLEdKVEe 12 (34)
T 3c3f_A 2 RMXQIEXKLEX 12 (34)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 34444444433
No 164
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.01 E-value=2.2e+02 Score=20.62 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 025362 186 ILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALK 233 (254)
Q Consensus 186 iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~ 233 (254)
-+|+|++-=-.|.+.+-. -..+|.+-+.-.|..|.+|...|-.|+
T Consensus 17 evK~ALaaSeAkiQQLmk---VN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMK---VNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH---HhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 356776654444433322 223444455556777888888887775
No 165
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.84 E-value=1.6e+02 Score=21.59 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q 025362 206 KEVELLKLVISQYQDQARNLELRNYALKLHLQRAQE 241 (254)
Q Consensus 206 ~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~qA~~ 241 (254)
.-+.+|.+.|.+-|.+|.+|+...=.|.-.|+....
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566667777777777777777777777765554
No 166
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=22.75 E-value=63 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 51 FPDVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 51 FP~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
.|..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 l~~~dD~~LlRFLrarkfdv~~A~~~l~~ 58 (403)
T 1olm_A 30 LPNPDDYFLLRWLRARSFDLQKSEAMLRK 58 (403)
T ss_dssp SSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHH
Confidence 46799999999999999999999999977
No 167
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.47 E-value=3.7e+02 Score=23.01 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 025362 213 LVISQYQDQARNLELRNYALKLHLQRAQ 240 (254)
Q Consensus 213 ql~~qyqEqir~LE~~NYaL~~HL~qA~ 240 (254)
..+...|.+|.+|...|-.|..+++.--
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778888888888888887776543
No 168
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.32 E-value=1.5e+02 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=4.7
Q ss_pred hhhhHHHHHHHH
Q 025362 197 RHLEQEQKEKEV 208 (254)
Q Consensus 197 R~~e~e~~~~E~ 208 (254)
|++.+|+++.|+
T Consensus 2 RMnQLEdKvEeL 13 (34)
T 2bni_A 2 RMKQIEDKLEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 444444444333
No 169
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=22.31 E-value=71 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHhhcchhHHHHHHHHhh
Q 025362 53 DVDPEVVKSVLGEHDNKIEDAIDRLRV 79 (254)
Q Consensus 53 ~md~q~le~aLe~cgndlDaAIksL~~ 79 (254)
..|+..|-+.|.+|..|++.|.+.|.+
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l~~ 56 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLLKN 56 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 579999999999999999999999976
No 170
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=22.22 E-value=3.1e+02 Score=22.10 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025362 211 LKLVISQYQDQARNLELR 228 (254)
Q Consensus 211 Lkql~~qyqEqir~LE~~ 228 (254)
+..+.....++|..+-.+
T Consensus 79 i~~v~~~a~~~L~~~~~~ 96 (187)
T 3v6i_A 79 LEEVRRRVREALEALPQK 96 (187)
T ss_dssp HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhhhCC
Confidence 334556666666666554
No 171
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.17 E-value=2.6e+02 Score=21.11 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQE----QKEKEVELLKLVISQYQDQARNLELRNYALKLHLQ 237 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e----~~~~E~~~Lkql~~qyqEqir~LE~~NYaL~~HL~ 237 (254)
+..|-..|.++|..|-+++..|...+...-.-....+ .--++...++.-+.++++..+.|+...---..||.
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666655544332222111 12255666667777778888887766544445553
No 172
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.95 E-value=2e+02 Score=22.90 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 025362 166 KELEHASLKEHLQSLLNDNQILKKAVSIQH 195 (254)
Q Consensus 166 ~~~E~~~lKeql~~l~~eN~iLKRAv~IQh 195 (254)
+.++...|..++..+.++-..||+|+.|-.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~ 34 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEA 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888899999988754
No 173
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.84 E-value=2.6e+02 Score=20.99 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 187 LKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARN 224 (254)
Q Consensus 187 LKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~ 224 (254)
|++-=.|--+|..+++...++..+-...+.+|.++|..
T Consensus 33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455677777777777777777788888888875
No 174
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.07 E-value=4.3e+02 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 025362 214 VISQYQDQARNLELRNYALKLH 235 (254)
Q Consensus 214 l~~qyqEqir~LE~~NYaL~~H 235 (254)
+-.+|+.+|.+| +|||++=
T Consensus 144 ak~qr~~rI~rL---~~AL~IA 162 (248)
T 4e29_A 144 AQEQKDLRIRQI---EEALRYA 162 (248)
T ss_dssp HHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHH
Confidence 446677777666 7888773
No 175
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.00 E-value=3.1e+02 Score=21.58 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHhhhhh-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025362 154 FERSIITNSKA-----SKELEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNL 225 (254)
Q Consensus 154 fEksi~~r~~a-----a~~~E~~~lKeql~~l~~eN~iLKRAv~IQheR~~e~e~~~~E~~~Lkql~~qyqEqir~L 225 (254)
|-|+++..|-= ++.=+..-||-.++.+-....-|+| ++.++.+++..+|..++.-+.++..|
T Consensus 11 yrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~R----------e~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 11 YKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRR----------QYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666554322 1444666666666666666655554 44555566666655555555555443
No 176
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=20.94 E-value=48 Score=24.56 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCchHHH-----HHHHHHHHHHHHH
Q 025362 127 VDLFVHEMMSAADLDDAR-----GRAARILEVFERS 157 (254)
Q Consensus 127 Vel~V~EM~~Asd~dDAr-----~RAsRvLEafEks 157 (254)
|++++..=..++++-.-| +||+|+++.+|..
T Consensus 16 ~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~ 51 (73)
T 2ve8_A 16 VRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMA 51 (73)
T ss_dssp HHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHC
Confidence 444444333344444433 7999999999973
No 177
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.91 E-value=99 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=16.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025362 194 QHERHLEQEQKEKEVELLKLVISQYQDQARNLEL 227 (254)
Q Consensus 194 QheR~~e~e~~~~E~~~Lkql~~qyqEqir~LE~ 227 (254)
.|-|.+.++ .++..|++.+...+++|+.|..
T Consensus 5 ~~~~~~~l~---~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 5 HHHRMKQLE---DKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp ----CHHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 355666555 3444555566777777776653
No 178
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.37 E-value=1.5e+02 Score=21.64 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025362 201 QEQKEKEVELLKLVISQYQDQAR 223 (254)
Q Consensus 201 ~e~~~~E~~~Lkql~~qyqEqir 223 (254)
++++..|+++|+..+.+||.=++
T Consensus 34 L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 34 LSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888888887555
No 179
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.18 E-value=3.1e+02 Score=21.33 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 025362 173 LKEHLQSLLNDNQILKKAVS 192 (254)
Q Consensus 173 lKeql~~l~~eN~iLKRAv~ 192 (254)
|.-+++.+...|..|.+.++
T Consensus 50 L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 50 LEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 33344444444455554443
Done!