BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025363
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 149/249 (59%), Gaps = 3/249 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K LV + +G+S + L + LM W + A+LD I PF K +G A+
Sbjct: 105 LYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAF 163
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G P N + K MS S M +LE Y GF+G+K LVDVGG G + I+ K+
Sbjct: 164 EYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP 223
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP V+ +APS PGV H+GGDMF SIP ADA+FMKW+ W+D+ C ++N
Sbjct: 224 TI-KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKN 282
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY+ALP GK+I E +LP + S T+ ++ D+ +M + G RT++EF+ L
Sbjct: 283 CYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDV-IMLAHNPGGKERTQKEFEDLAKG 341
Query: 241 AGFPHLRLY 249
AGF +++
Sbjct: 342 AGFQGFKVH 350
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 140/243 (57%), Gaps = 3/243 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L + K L + +G+S AP++L L+ W + AIL+ I PF K +G +
Sbjct: 108 LYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIF 166
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
Y+G +N + K MS S M +LE YNGF+G+ +VDVGG G MI+ K+
Sbjct: 167 DYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYP 226
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I INFDLP V+ +AP+ GV H+GGDMF +P DAIF+KW+ W+D+ C +++N
Sbjct: 227 SI-NAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKN 285
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
CY ALP GK+I E +LP + S T+ ++ D +M Y G RTE+EF+ L
Sbjct: 286 CYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDA-LMLAYNPGGKERTEKEFQALAMA 344
Query: 241 AGF 243
+GF
Sbjct: 345 SGF 347
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 183 bits (464), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 139/246 (56%), Gaps = 3/246 (1%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y + K L + +G+S A L + LM W + A+LD I PF K +G A+
Sbjct: 107 YGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFE 165
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF 121
Y+G P N + + M S+ +LE Y+GF+G+ LVDVGG G + I H
Sbjct: 166 YHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAI-AAHYP 224
Query: 122 ICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENC 181
+G+NFDLP V++EAP PGVTH+GGDMFK +P+ D I MKW+L W+D C +++NC
Sbjct: 225 TIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNC 284
Query: 182 YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241
Y ALPA GK++ + +LP + + ++ + D+ +M + G R E+EF+ L A
Sbjct: 285 YDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDM-IMLAHNPGGRERYEREFQALARGA 343
Query: 242 GFPHLR 247
GF ++
Sbjct: 344 GFTGVK 349
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 146/250 (58%), Gaps = 7/250 (2%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L+ +GK LV D A + AL+ +W +A++D I+ F VHG Y
Sbjct: 113 VYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
+ GK +MN + K+M V M +LE Y GF+G+ LVDVGG +G L +I+ K+
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP 232
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP+V+ AP + G+ H+GGDMF S+P DA+ +K V W+D++C + N
Sbjct: 233 LI-KGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSN 291
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTR--ALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238
C+KAL GK+I E +LP++ N S+ ++ + L+ +F+ G RTE+++++L
Sbjct: 292 CHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI----TVGGRERTEKQYEKLS 347
Query: 239 FFAGFPHLRL 248
+GF ++
Sbjct: 348 KLSGFSKFQV 357
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 137/248 (55%), Gaps = 3/248 (1%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
+Y L+ +GK LV D A + AL+ +W +A++D I+ F VHG Y
Sbjct: 113 VYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKY 172
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR 120
+ GK + N + K+ V LE Y GF+G+ LVDVGG +G L +I+ K+
Sbjct: 173 EFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYP 232
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
I +GINFDLP+V+ AP + G+ H+GGD F S+P DA +K V W+D++C + N
Sbjct: 233 LI-KGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSN 291
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
C+KAL GK+I E +LP++ N S+ ++ L + + G RTE+++++L
Sbjct: 292 CHKALSPNGKVIIVEFILPEEPNTSEESK--LVSTLDNLXFITVGGRERTEKQYEKLSKL 349
Query: 241 AGFPHLRL 248
+GF ++
Sbjct: 350 SGFSKFQV 357
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+LT + L+ L AP V L + + K I + + F G +
Sbjct: 94 YALT-VASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWD 152
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-R 120
+ K PE N AM+ S ++ + F G++ +VDVGG G ++I + +
Sbjct: 153 FLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK 212
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
C I FD P+VV +T++GGDMF SIP ADA+ +K++L WTD +C I++
Sbjct: 213 LKC--IVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKK 270
Query: 181 CYKALPAG---GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237
C +A+ GK+ + V+ +E+Q T+ L D+ + + G R E+E+K+L
Sbjct: 271 CKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKL 327
Query: 238 GFFAGFPHLRL 248
AGF H ++
Sbjct: 328 FIEAGFQHYKI 338
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+LT + LV E L AP V L + + + K + + + F G +
Sbjct: 99 YALTVASELLVKGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWE 157
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-R 120
+ K PE N L A++ S ++ + F+G++ +VDVGG G ++I + +
Sbjct: 158 FLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPK 217
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
C + FD P+VV +T++GGDMF S+P ADA+ +K VL WTD +C I++
Sbjct: 218 LTC--VVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKK 275
Query: 181 CYKALPAG---GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237
C +A+ + GK+I + V+ + +E+Q T+ L + +TI G R E+E+K+L
Sbjct: 276 CKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKL---LMNVTISCVNGKERNEEEWKKL 332
Query: 238 GFFAGFPHLRL 248
AGF ++
Sbjct: 333 FIEAGFQDYKI 343
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 10/251 (3%)
Query: 2 YSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYS 61
Y+LT + L+ L AP V L + + K I + + F G +
Sbjct: 94 YALT-VASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWD 152
Query: 62 YYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-R 120
+ K PE N A + S ++ + F G++ +VDVGG G ++I + +
Sbjct: 153 FLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK 212
Query: 121 FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 180
C I FD P+VV +T++GGD F SIP ADA+ +K++L WTD +C I++
Sbjct: 213 LKC--IVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKK 270
Query: 181 CYKALPAG---GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237
C +A+ GK+ + V+ +E+Q T+ L D+ + G R E+E+K+L
Sbjct: 271 CKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL---NGKERNEEEWKKL 327
Query: 238 GFFAGFPHLRL 248
AGF H ++
Sbjct: 328 FIEAGFQHYKI 338
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 56 GEPAYSYYGKIPEMNGL--MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLR 113
GE + + K E + L + AM+ S F + E F+G++ LVDVGG G +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 114 MILQKHRFI--CEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 171
+I H + FD P+VV + +GGDMFKSIP+ADA+ +KWVL W D
Sbjct: 209 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWND 265
Query: 172 DECKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH 228
++ I++N +A+ GK+I + + + S++ T L+ D+ ++T++ G
Sbjct: 266 EQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKE 323
Query: 229 RTEQEFKQLGFFAGFPHLRL 248
RT+QE+++L + AGF ++
Sbjct: 324 RTKQEWEKLIYDAGFSSYKI 343
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 56 GEPAYSYYGKIPEMNGL--MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLR 113
GE + + K E + L + AM+ S F + E F+G++ LVDVGG G +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 114 MILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173
+I + + + FD P+VV + +GGDMFKSIP+ADA+ +KWVL W D++
Sbjct: 210 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 268
Query: 174 CKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230
I++N +A+ GK+I + + + S++ T L+ D+ ++T++ G RT
Sbjct: 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERT 326
Query: 231 EQEFKQLGFFAGFPHLRL 248
+QE+++L + AGF ++
Sbjct: 327 KQEWEKLIYDAGFSSYKI 344
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 12/200 (6%)
Query: 56 GEPAYSYYGKIPEMNGL--MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLR 113
GE + + K E + L + AM+ S F + E F+G++ LVDVGG G +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 114 MILQKHRFI--CEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 171
+I H + FD P+VV + +GGDMFKSIP+ADA+ +KWVL W D
Sbjct: 206 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWND 262
Query: 172 DECKLIMENCYKALP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH 228
++ I++N +A+ GK+I + + + S++ T L+ D+ ++T++ G
Sbjct: 263 EQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKE 320
Query: 229 RTEQEFKQLGFFAGFPHLRL 248
RT+QE+++L + AGF ++
Sbjct: 321 RTKQEWEKLIYDAGFSSYKI 340
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 18/225 (8%)
Query: 35 MWPLVHK--AILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGY 92
W H+ + L P F + G +Y+ E+ L + VS +L
Sbjct: 121 FWTXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHL-ILARA 179
Query: 93 NGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVA----EAPSIPGVTHI-G 147
F + DVGG G L +L++H + +G+ D EVVA +AP + G +
Sbjct: 180 GDFPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVE 238
Query: 148 GDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR 207
GD + +P AD +K +L W D++ I+ NC + PA G+++ + V+P+ ++ Q
Sbjct: 239 GDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQS 298
Query: 208 TRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252
E D + G RT E + L AG LRL RV+
Sbjct: 299 K----EXDFXXLAAR--TGQERTAAELEPLFTAAG---LRLDRVV 334
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 25/248 (10%)
Query: 11 LVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMN 70
L+ DVEG S+ VL + ++ + W +A+L T F GE YSY + P+
Sbjct: 87 LLRDVEG-SFRDMVLFYGEE-FHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAG 143
Query: 71 GLMRKAMSGVSVPF--MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINF 128
AM ++ F + +L+ F+G + VDVGG +G+ + ILQ G+
Sbjct: 144 RRFLLAMKASNLAFHEIPRLLD----FRG-RSFVDVGGGSGELTKAILQAEPS-ARGVML 197
Query: 129 DLPEVVAEAPS-----IPG--VTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL-IMEN 180
D + A + G V+ +GGDM + +P+ I++ + D+ L ++ N
Sbjct: 198 DREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGN 257
Query: 181 CYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240
C +A+ G+++ E + ++E L + +F+ G HRT +E L
Sbjct: 258 CREAMAGDGRVVVIERTIS--ASEPSPMSVLWDVHLFMA----CAGRHRTTEEVVDLLGR 311
Query: 241 AGFPHLRL 248
GF R+
Sbjct: 312 GGFAVERI 319
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 19/261 (7%)
Query: 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAY 60
Y TE+ +T V S +L++ W + A+ + + +L+ G PA
Sbjct: 83 FYRNTELSSDYLTTVSPTSQCS-MLKYMGRTSYRCWGHLADAVREGRNQ-YLETFGVPAE 140
Query: 61 SYYGKIPEMNGLMRKAMSGVSVPFMT---SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQ 117
+ I G + M + + SVL ++ + D+GG AG + +
Sbjct: 141 ELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMS 199
Query: 118 KHRFICEGINFDLPEVVAEAP---SIPGVTHIG---GDMFKS-IPAADAIFMKWVLTTWT 170
+ C+ FD+PEVV A S I GD FK +P AD + VL W
Sbjct: 200 LYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWA 258
Query: 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230
D +C ++E Y GG ++ E +L +D R LL + + + +G RT
Sbjct: 259 DGKCSHLLERIYHTCKPGGGILVIESLLDED-----RRGPLLTQLYSLNMLVQTEGQERT 313
Query: 231 EQEFKQLGFFAGFPHLRLYRV 251
+ L AGF + +
Sbjct: 314 PTHYHMLLSSAGFRDFQFKKT 334
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Query: 95 FKGVKRLVDVGGSAGDCLRMI------LQKHRFICEGINFDLPEVVAEAPSIPGVTHIGG 148
+ V+ ++DVGG G L I L+ G A+A VT G
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239
Query: 149 DMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR 207
D FK +P AD + + +VL W+D++ I+ C +AL GG+L+ + + +
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 299
Query: 208 TRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243
LL D+ ++T G RT E L AG
Sbjct: 300 FSTLL--DLRMLTFM--GGRVRTRDEVVDLAGSAGL 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 143 VTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201
VT GD FK +P AD + + +VL W+D++ I+ C +AL GG+L+ +
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD------ 287
Query: 202 SNESQRTRALLEG---DIFVMTIYRAK------GNHRTEQEFKQLGFFAGF 243
RA +EG D F T+ + G RT E L AG
Sbjct: 288 -------RADVEGDGADRFFSTLLDLRXLTFXGGRVRTRDEVVDLAGSAGL 331
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP---EVVAEAPSIPGVTH----IGGD 149
GVK+++DVGG GD +L KH + +LP ++V E + GV I D
Sbjct: 190 GVKKMIDVGGGIGDISAAML-KHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVD 248
Query: 150 MFK-SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN 203
++K S P ADA+ +L + + ++ + + A+ +GG+L+ + V+ D N
Sbjct: 249 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN 303
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 146 IGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE 204
+ GD F+ +P ADAI + +VL W D + I+ C +AL GG+++ E DD +E
Sbjct: 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHE 294
Query: 205 SQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGF 243
+ E D+ ++ G RT +++ L AG
Sbjct: 295 NSFNEQFTELDLRMLVFL--GGALRTREKWDGLAASAGL 331
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 24/212 (11%)
Query: 51 FLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGD 110
F +G + + P+ L +A VS+ V Y+ F G VD+GG G
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGS 215
Query: 111 CLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIG---------GDMFKSIP-AADAI 160
+L + G + P V EA + +T G GD F++IP AD
Sbjct: 216 LXAAVLDAFPGL-RGTLLERPPVAEEAREL--LTGRGLADRCEILPGDFFETIPDGADVY 272
Query: 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT 220
+K VL W DD+ I+ A +L+ + ++ + S + ++
Sbjct: 273 LIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLF-------VDLLL 325
Query: 221 IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252
+ G R+E EF L +G LR+ R L
Sbjct: 326 LVLVGGAERSESEFAALLEKSG---LRVERSL 354
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 148 GDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ 206
G F +PA A + VL W D I+ C +A +GG ++ E V D+ +
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTG 285
Query: 207 RTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244
D+ ++T + G R+ E +L AG
Sbjct: 286 M-------DLRMLTYF--GGKERSLAELGELAAQAGLA 314
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 115 ILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA 157
I RF+ G + PEV+++ P I V G ++SIP A
Sbjct: 34 ITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 76
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 115 ILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA 157
I RF+ G + PEV+++ P I V G ++SIP A
Sbjct: 38 ITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 80
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 65 KIPEMNGLMRKAMSGVSVPF--MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFI 122
++P + +++ S+ F M L+G + + ++V G G LR+IL +HR
Sbjct: 62 RLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIG--LRIILDRHRPD 119
Query: 123 CEG 125
C G
Sbjct: 120 CSG 122
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 65 KIPEMNGLMRKAMSGVSVPF--MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFI 122
++P + +++ S+ F M L+G + + ++V G G LR+IL +HR
Sbjct: 62 RLPYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIG--LRIILDRHRPD 119
Query: 123 CEG 125
C G
Sbjct: 120 CSG 122
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 16/196 (8%)
Query: 57 EPAYSYYGKIPEMNGLMRKAMSGV--SVPFMTSV-LEGYNGF------KGVKRLVDVGGS 107
+P +YGK E + +SGV + V +EG F G R +D G
Sbjct: 44 DPEKGWYGKALEYWRTVPATVSGVLGGXDHVHDVDIEGSRNFIASLPGHGTSRALDCGAG 103
Query: 108 AGDCLRMILQK---HRFICEGINFDLPEVVAEAPSIP-GVTHIGGDMFKSIP--AADAIF 161
G + +L K + E + L E E P G + ++P D I
Sbjct: 104 IGRITKNLLTKLYATTDLLEPVKHXLEEAKRELAGXPVGKFILASXETATLPPNTYDLIV 163
Query: 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMT 220
++W TD + ++C +AL G + E D + +L DI
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223
Query: 221 IYRAKGNHRTEQEFKQ 236
++ G ++ F++
Sbjct: 224 LFNESGVRVVKEAFQE 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,124,575
Number of Sequences: 62578
Number of extensions: 340551
Number of successful extensions: 787
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 26
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)