Query 025363
Match_columns 254
No_of_seqs 185 out of 2122
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 4.4E-45 9.6E-50 297.2 16.0 234 1-239 5-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 3.5E-38 7.6E-43 258.4 19.3 249 1-252 82-332 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 6.4E-30 1.4E-34 215.0 19.3 234 1-249 59-305 (306)
4 COG2226 UbiE Methylase involve 99.8 3.5E-19 7.6E-24 142.0 14.0 159 86-251 41-225 (238)
5 PTZ00098 phosphoethanolamine N 99.8 5.5E-19 1.2E-23 145.2 14.7 156 85-252 41-204 (263)
6 PLN02233 ubiquinone biosynthes 99.8 4.5E-18 9.7E-23 139.7 15.8 154 95-253 71-251 (261)
7 TIGR00740 methyltransferase, p 99.8 1E-18 2.2E-23 142.0 11.7 146 96-247 52-224 (239)
8 PF01209 Ubie_methyltran: ubiE 99.8 1.1E-19 2.4E-24 146.1 5.5 158 88-252 39-222 (233)
9 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.1E-18 4.5E-23 140.7 12.8 149 96-247 55-227 (247)
10 PRK14103 trans-aconitate 2-met 99.8 1.9E-17 4.2E-22 135.8 15.9 159 85-248 18-182 (255)
11 PLN02490 MPBQ/MSBQ methyltrans 99.8 2E-17 4.4E-22 139.2 14.3 148 88-253 104-259 (340)
12 PLN02244 tocopherol O-methyltr 99.7 4.1E-17 9E-22 138.9 15.6 161 85-252 102-280 (340)
13 KOG1540 Ubiquinone biosynthesi 99.7 4.7E-17 1E-21 127.9 14.5 156 85-247 89-278 (296)
14 TIGR02752 MenG_heptapren 2-hep 99.7 5.7E-17 1.2E-21 131.1 13.2 159 86-252 35-220 (231)
15 PLN02336 phosphoethanolamine N 99.7 3.1E-16 6.7E-21 139.7 15.1 152 85-251 255-415 (475)
16 PF12847 Methyltransf_18: Meth 99.7 1E-16 2.2E-21 114.9 8.3 98 97-195 1-111 (112)
17 smart00828 PKS_MT Methyltransf 99.7 3.1E-16 6.7E-21 126.3 12.0 135 99-251 1-145 (224)
18 PRK11207 tellurite resistance 99.7 9.4E-16 2E-20 120.9 13.8 141 85-248 19-168 (197)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 6.6E-16 1.4E-20 130.2 12.9 150 88-251 114-275 (322)
20 PLN02396 hexaprenyldihydroxybe 99.7 2.2E-16 4.7E-21 132.5 9.4 144 97-251 131-290 (322)
21 PF13489 Methyltransf_23: Meth 99.7 7.3E-16 1.6E-20 117.4 11.6 137 95-247 20-160 (161)
22 PRK11873 arsM arsenite S-adeno 99.7 1.4E-15 3E-20 126.0 14.0 146 94-250 74-230 (272)
23 TIGR00452 methyltransferase, p 99.7 7.9E-16 1.7E-20 128.6 12.6 151 87-251 112-274 (314)
24 PF02353 CMAS: Mycolic acid cy 99.7 7.9E-16 1.7E-20 126.5 11.7 161 84-251 50-218 (273)
25 PRK00216 ubiE ubiquinone/menaq 99.7 3E-15 6.5E-20 121.5 14.9 160 86-252 41-227 (239)
26 PRK01683 trans-aconitate 2-met 99.7 5.8E-15 1.3E-19 121.4 16.6 107 84-194 19-129 (258)
27 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2.6E-15 5.7E-20 120.5 14.1 161 86-253 29-213 (223)
28 PRK06922 hypothetical protein; 99.7 8.4E-16 1.8E-20 137.1 11.3 143 57-201 377-543 (677)
29 COG2230 Cfa Cyclopropane fatty 99.7 1.7E-15 3.8E-20 123.0 12.2 157 85-252 61-225 (283)
30 PRK08317 hypothetical protein; 99.7 2.9E-15 6.4E-20 121.5 13.6 156 87-250 10-176 (241)
31 PRK11036 putative S-adenosyl-L 99.6 1.4E-15 3E-20 124.8 11.4 156 86-251 35-208 (255)
32 KOG1270 Methyltransferases [Co 99.6 6.1E-16 1.3E-20 122.3 6.6 144 98-252 90-251 (282)
33 TIGR00477 tehB tellurite resis 99.6 2.1E-14 4.6E-19 113.0 14.8 142 85-249 19-168 (195)
34 PF13847 Methyltransf_31: Meth 99.6 5.9E-16 1.3E-20 117.1 5.1 98 96-197 2-112 (152)
35 TIGR02021 BchM-ChlM magnesium 99.6 2.4E-14 5.1E-19 114.9 14.4 158 84-252 41-208 (219)
36 PF08241 Methyltransf_11: Meth 99.6 2.3E-15 5E-20 104.2 6.2 88 102-193 1-95 (95)
37 COG4106 Tam Trans-aconitate me 99.6 6.3E-15 1.4E-19 113.3 9.0 119 72-195 7-129 (257)
38 PRK08287 cobalt-precorrin-6Y C 99.6 3E-14 6.6E-19 111.5 12.8 126 88-250 23-156 (187)
39 smart00138 MeTrc Methyltransfe 99.6 3.5E-14 7.5E-19 116.7 13.6 101 95-196 97-243 (264)
40 PLN02336 phosphoethanolamine N 99.6 3.3E-14 7.1E-19 126.8 14.1 145 84-247 25-179 (475)
41 PF08242 Methyltransf_12: Meth 99.6 7.4E-16 1.6E-20 108.0 2.5 87 102-191 1-99 (99)
42 PRK04266 fibrillarin; Provisio 99.6 8.3E-14 1.8E-18 111.5 14.3 135 91-253 67-213 (226)
43 PRK10258 biotin biosynthesis p 99.6 1.2E-13 2.6E-18 113.1 14.9 148 84-245 30-182 (251)
44 PRK11705 cyclopropane fatty ac 99.6 7.5E-14 1.6E-18 120.4 14.2 155 85-252 156-314 (383)
45 PRK06202 hypothetical protein; 99.6 6.9E-14 1.5E-18 113.2 12.7 147 95-250 58-222 (232)
46 TIGR03587 Pse_Me-ase pseudamin 99.6 5.2E-14 1.1E-18 111.3 11.5 103 95-200 41-147 (204)
47 TIGR02072 BioC biotin biosynth 99.6 1.7E-13 3.7E-18 111.1 14.7 136 97-249 34-175 (240)
48 PRK12335 tellurite resistance 99.5 9.5E-14 2.1E-18 115.8 13.3 144 86-252 110-261 (287)
49 COG2227 UbiG 2-polyprenyl-3-me 99.5 7.5E-15 1.6E-19 115.4 5.1 144 97-251 59-216 (243)
50 PRK07580 Mg-protoporphyrin IX 99.5 3.1E-13 6.7E-18 109.2 14.1 148 95-252 61-216 (230)
51 PF13649 Methyltransf_25: Meth 99.5 3.3E-14 7.1E-19 100.0 4.7 88 101-189 1-101 (101)
52 PRK05785 hypothetical protein; 99.5 3.7E-13 8E-18 108.2 11.4 95 97-199 51-149 (226)
53 PF06080 DUF938: Protein of un 99.5 5.5E-13 1.2E-17 103.4 11.0 149 100-253 28-195 (204)
54 KOG4300 Predicted methyltransf 99.5 2.5E-13 5.4E-18 103.8 8.1 172 69-250 49-232 (252)
55 PLN03075 nicotianamine synthas 99.5 4.6E-13 1E-17 110.1 9.9 98 96-195 122-233 (296)
56 TIGR00537 hemK_rel_arch HemK-r 99.4 1.7E-12 3.8E-17 100.8 12.5 120 97-249 19-164 (179)
57 PF05891 Methyltransf_PK: AdoM 99.4 2.7E-13 5.8E-18 105.6 7.2 139 97-252 55-203 (218)
58 KOG2361 Predicted methyltransf 99.4 5E-13 1.1E-17 104.6 8.5 146 99-248 73-235 (264)
59 PF05401 NodS: Nodulation prot 99.4 2.2E-13 4.8E-18 104.4 6.3 99 95-196 41-147 (201)
60 PRK05134 bifunctional 3-demeth 99.4 1.4E-12 3.1E-17 105.5 11.1 147 95-250 46-205 (233)
61 PRK15001 SAM-dependent 23S rib 99.4 1.7E-12 3.8E-17 110.9 11.6 108 86-195 218-340 (378)
62 TIGR00138 gidB 16S rRNA methyl 99.4 1.8E-12 3.9E-17 100.6 10.6 91 98-195 43-142 (181)
63 TIGR03840 TMPT_Se_Te thiopurin 99.4 9.4E-12 2E-16 98.9 14.6 100 96-198 33-155 (213)
64 TIGR03438 probable methyltrans 99.4 8.2E-13 1.8E-17 110.8 8.5 106 85-194 54-176 (301)
65 TIGR02469 CbiT precorrin-6Y C5 99.4 4.3E-12 9.3E-17 92.3 10.5 100 88-194 11-121 (124)
66 PLN02585 magnesium protoporphy 99.4 4.8E-12 1E-16 106.1 11.7 143 97-249 144-298 (315)
67 PTZ00146 fibrillarin; Provisio 99.4 4.3E-11 9.3E-16 98.2 16.8 133 94-253 129-274 (293)
68 PRK00107 gidB 16S rRNA methylt 99.4 2.4E-12 5.3E-17 100.1 9.0 94 96-196 44-146 (187)
69 TIGR01983 UbiG ubiquinone bios 99.4 3.3E-12 7.1E-17 102.8 9.5 144 97-251 45-204 (224)
70 TIGR03534 RF_mod_PrmC protein- 99.4 9.7E-12 2.1E-16 101.7 12.3 132 85-250 77-241 (251)
71 PF03848 TehB: Tellurite resis 99.4 2.6E-12 5.7E-17 99.5 8.1 111 84-198 18-136 (192)
72 PRK09489 rsmC 16S ribosomal RN 99.4 7.8E-12 1.7E-16 106.2 11.5 108 87-196 187-304 (342)
73 PF08003 Methyltransf_9: Prote 99.3 1.1E-11 2.3E-16 101.2 11.2 140 97-251 115-268 (315)
74 PF12147 Methyltransf_20: Puta 99.3 1.8E-11 3.9E-16 98.9 12.3 140 96-247 134-295 (311)
75 PRK13255 thiopurine S-methyltr 99.3 2.8E-11 6.2E-16 96.6 13.3 101 95-198 35-158 (218)
76 PF05175 MTS: Methyltransferas 99.3 4.3E-12 9.4E-17 97.7 8.0 98 97-195 31-140 (170)
77 TIGR02081 metW methionine bios 99.3 1.7E-11 3.7E-16 96.5 10.7 144 96-252 12-169 (194)
78 PRK00121 trmB tRNA (guanine-N( 99.3 8.6E-12 1.9E-16 98.7 7.6 98 97-195 40-156 (202)
79 COG2242 CobL Precorrin-6B meth 99.3 9E-11 1.9E-15 89.4 12.0 99 89-195 27-135 (187)
80 PRK13944 protein-L-isoaspartat 99.3 3.1E-11 6.6E-16 95.8 10.1 100 85-194 61-172 (205)
81 PRK11188 rrmJ 23S rRNA methylt 99.3 9.6E-11 2.1E-15 93.1 12.8 105 87-196 41-166 (209)
82 PRK09328 N5-glutamine S-adenos 99.3 8.8E-11 1.9E-15 97.4 12.7 122 95-248 106-260 (275)
83 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.8E-11 3.8E-16 96.3 7.5 97 97-195 16-132 (194)
84 PRK13942 protein-L-isoaspartat 99.2 5.9E-11 1.3E-15 94.6 10.2 102 84-195 64-176 (212)
85 PLN02232 ubiquinone biosynthes 99.2 3.2E-11 7E-16 91.8 7.9 123 127-252 2-149 (160)
86 PRK14968 putative methyltransf 99.2 3.1E-10 6.7E-15 88.7 13.4 121 96-249 22-172 (188)
87 PRK00377 cbiT cobalt-precorrin 99.2 2E-10 4.3E-15 90.7 11.9 97 90-193 34-143 (198)
88 TIGR00080 pimt protein-L-isoas 99.2 1E-10 2.2E-15 93.5 9.9 100 85-194 66-176 (215)
89 PRK07402 precorrin-6B methylas 99.2 1.1E-10 2.3E-15 92.1 9.7 101 88-196 32-143 (196)
90 PRK11088 rrmA 23S rRNA methylt 99.2 5.6E-11 1.2E-15 98.4 8.3 90 97-196 85-182 (272)
91 COG2813 RsmC 16S RNA G1207 met 99.2 2.5E-10 5.5E-15 93.3 11.6 109 86-196 148-267 (300)
92 TIGR03533 L3_gln_methyl protei 99.2 1.3E-10 2.7E-15 96.7 9.4 96 97-193 121-249 (284)
93 PHA03411 putative methyltransf 99.2 3.8E-10 8.2E-15 91.7 11.8 124 97-245 64-209 (279)
94 PF07021 MetW: Methionine bios 99.2 4.1E-10 9E-15 86.3 11.3 146 95-253 11-170 (193)
95 PRK00517 prmA ribosomal protei 99.2 3.5E-10 7.7E-15 92.5 11.6 113 96-250 118-238 (250)
96 PRK14966 unknown domain/N5-glu 99.2 6.4E-10 1.4E-14 95.6 13.1 121 97-249 251-404 (423)
97 TIGR00536 hemK_fam HemK family 99.2 3.2E-10 6.8E-15 94.5 10.9 94 99-193 116-242 (284)
98 COG4123 Predicted O-methyltran 99.2 3.8E-10 8.2E-15 90.4 10.6 125 95-251 42-195 (248)
99 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.9E-10 6.2E-15 97.1 10.4 106 87-195 113-235 (390)
100 PRK14967 putative methyltransf 99.1 1.5E-09 3.3E-14 87.3 13.8 102 95-198 34-162 (223)
101 KOG1271 Methyltransferases [Ge 99.1 2E-10 4.4E-15 86.3 7.6 125 96-252 65-207 (227)
102 TIGR00406 prmA ribosomal prote 99.1 7.3E-10 1.6E-14 92.4 11.7 94 96-196 158-260 (288)
103 PRK04457 spermidine synthase; 99.1 1.7E-10 3.6E-15 94.8 7.7 97 96-194 65-176 (262)
104 PRK11805 N5-glutamine S-adenos 99.1 2.4E-10 5.2E-15 95.9 8.7 94 99-193 135-261 (307)
105 TIGR00438 rrmJ cell division p 99.1 8.2E-10 1.8E-14 86.5 10.5 103 88-195 23-146 (188)
106 TIGR03704 PrmC_rel_meth putati 99.1 2.1E-09 4.5E-14 87.9 13.0 97 97-194 86-215 (251)
107 PRK01544 bifunctional N5-gluta 99.1 1.2E-09 2.7E-14 97.6 12.1 95 98-193 139-267 (506)
108 KOG2899 Predicted methyltransf 99.1 6.5E-10 1.4E-14 87.3 8.7 108 85-193 45-207 (288)
109 cd02440 AdoMet_MTases S-adenos 99.1 1.4E-09 3.1E-14 75.6 9.3 92 100-194 1-103 (107)
110 TIGR01177 conserved hypothetic 99.1 3E-09 6.5E-14 90.5 12.7 107 85-195 171-294 (329)
111 PRK13256 thiopurine S-methyltr 99.0 4.5E-09 9.9E-14 83.8 12.4 101 95-198 41-166 (226)
112 PRK10611 chemotaxis methyltran 99.0 7.8E-09 1.7E-13 85.5 14.1 97 98-195 116-262 (287)
113 PRK00312 pcm protein-L-isoaspa 99.0 2.2E-09 4.7E-14 85.7 10.5 100 85-196 67-176 (212)
114 PF05724 TPMT: Thiopurine S-me 99.0 1.5E-09 3.2E-14 86.5 8.8 131 95-249 35-189 (218)
115 COG4976 Predicted methyltransf 99.0 6.6E-10 1.4E-14 86.6 6.0 146 85-252 114-267 (287)
116 COG2264 PrmA Ribosomal protein 99.0 3.2E-09 7E-14 87.3 10.2 125 87-250 154-288 (300)
117 PF05148 Methyltransf_8: Hypot 99.0 2.8E-09 6.1E-14 82.5 9.0 164 34-248 13-183 (219)
118 PRK00811 spermidine synthase; 99.0 1.9E-09 4.2E-14 89.6 7.9 98 96-194 75-190 (283)
119 PF13659 Methyltransf_26: Meth 99.0 6.6E-10 1.4E-14 80.0 4.4 95 99-195 2-115 (117)
120 PF01739 CheR: CheR methyltran 99.0 3E-09 6.5E-14 83.3 8.2 98 97-195 31-175 (196)
121 PF05219 DREV: DREV methyltran 99.0 7.6E-09 1.7E-13 82.8 10.5 140 97-252 94-242 (265)
122 KOG3010 Methyltransferase [Gen 99.0 2.4E-09 5.2E-14 84.2 7.2 95 98-198 34-139 (261)
123 PRK13943 protein-L-isoaspartat 98.9 7.2E-09 1.6E-13 87.2 10.0 101 85-195 69-180 (322)
124 COG2890 HemK Methylase of poly 98.9 3.3E-08 7.2E-13 81.9 12.9 93 100-193 113-236 (280)
125 COG2518 Pcm Protein-L-isoaspar 98.9 1.7E-08 3.8E-13 78.6 10.0 101 84-196 60-170 (209)
126 PRK01581 speE spermidine synth 98.9 7.6E-09 1.7E-13 87.4 8.3 98 96-194 149-267 (374)
127 PF06325 PrmA: Ribosomal prote 98.9 1.1E-08 2.5E-13 84.8 9.1 92 96-197 160-261 (295)
128 COG1352 CheR Methylase of chem 98.9 4E-08 8.7E-13 80.3 12.0 98 97-195 96-241 (268)
129 PLN02366 spermidine synthase 98.9 1.2E-08 2.6E-13 85.4 9.1 98 96-194 90-205 (308)
130 PRK03612 spermidine synthase; 98.9 2.5E-08 5.4E-13 89.7 11.7 98 96-195 296-415 (521)
131 PRK14904 16S rRNA methyltransf 98.9 2.1E-08 4.5E-13 88.7 10.8 111 88-200 242-382 (445)
132 PRK10901 16S rRNA methyltransf 98.9 2.2E-08 4.7E-13 88.1 10.8 112 86-199 234-376 (427)
133 PLN02781 Probable caffeoyl-CoA 98.9 2E-08 4.4E-13 81.2 9.7 98 95-198 66-181 (234)
134 PF01135 PCMT: Protein-L-isoas 98.9 4.7E-09 1E-13 83.0 5.8 103 84-196 60-173 (209)
135 TIGR00417 speE spermidine synt 98.9 1E-08 2.2E-13 84.8 8.1 97 97-194 72-185 (270)
136 COG2519 GCD14 tRNA(1-methylade 98.9 2.4E-08 5.1E-13 79.6 9.7 118 73-199 67-199 (256)
137 PRK14902 16S rRNA methyltransf 98.8 2.6E-08 5.6E-13 88.2 10.4 110 87-198 241-382 (444)
138 TIGR00563 rsmB ribosomal RNA s 98.8 2.5E-08 5.4E-13 87.8 9.4 114 85-200 227-373 (426)
139 PF04672 Methyltransf_19: S-ad 98.8 1E-08 2.2E-13 82.9 5.9 153 85-247 56-233 (267)
140 smart00650 rADc Ribosomal RNA 98.8 3.5E-08 7.5E-13 75.9 8.3 103 85-196 2-114 (169)
141 KOG3045 Predicted RNA methylas 98.8 7.4E-08 1.6E-12 76.6 9.5 122 59-197 138-266 (325)
142 PLN02672 methionine S-methyltr 98.7 8.3E-08 1.8E-12 91.6 11.6 95 98-193 119-276 (1082)
143 PRK14901 16S rRNA methyltransf 98.7 6E-08 1.3E-12 85.5 9.8 112 86-199 242-388 (434)
144 PRK14903 16S rRNA methyltransf 98.7 5.9E-08 1.3E-12 85.3 9.4 127 73-201 214-372 (431)
145 COG3963 Phospholipid N-methylt 98.7 1.5E-07 3.2E-12 70.1 9.8 113 83-197 35-158 (194)
146 PF08704 GCD14: tRNA methyltra 98.7 4E-08 8.6E-13 79.5 7.0 105 85-198 29-149 (247)
147 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1E-07 2.2E-12 78.6 9.3 105 95-200 69-204 (264)
148 PHA03412 putative methyltransf 98.7 1.6E-07 3.5E-12 74.8 9.0 94 98-193 50-160 (241)
149 PF02390 Methyltransf_4: Putat 98.7 3.8E-08 8.2E-13 77.3 5.4 95 99-195 19-133 (195)
150 PF03291 Pox_MCEL: mRNA cappin 98.6 8.6E-08 1.9E-12 81.1 6.9 97 97-195 62-186 (331)
151 PLN02476 O-methyltransferase 98.6 5.2E-07 1.1E-11 74.2 10.0 99 95-199 116-232 (278)
152 PF08123 DOT1: Histone methyla 98.6 2.2E-07 4.8E-12 73.2 7.4 112 85-201 31-164 (205)
153 PF10294 Methyltransf_16: Puta 98.5 1.6E-07 3.5E-12 72.4 6.0 101 95-198 43-159 (173)
154 PF01596 Methyltransf_3: O-met 98.5 7.6E-08 1.7E-12 76.0 2.7 98 96-199 44-159 (205)
155 KOG1975 mRNA cap methyltransfe 98.5 3.9E-07 8.4E-12 74.8 6.6 108 83-194 105-236 (389)
156 COG4122 Predicted O-methyltran 98.5 4.6E-07 1E-11 71.7 6.9 99 95-199 57-170 (219)
157 KOG1541 Predicted protein carb 98.5 3E-07 6.6E-12 71.6 5.5 107 84-194 36-159 (270)
158 KOG2904 Predicted methyltransf 98.4 1.2E-06 2.5E-11 70.5 8.5 97 97-194 148-284 (328)
159 TIGR00755 ksgA dimethyladenosi 98.4 1.2E-06 2.6E-11 71.9 8.9 92 84-183 17-116 (253)
160 PLN02823 spermine synthase 98.4 6.6E-07 1.4E-11 75.8 7.5 96 97-194 103-219 (336)
161 PRK11727 23S rRNA mA1618 methy 98.4 1.5E-06 3.3E-11 73.0 9.0 144 97-251 114-293 (321)
162 TIGR03439 methyl_EasF probable 98.4 1.2E-06 2.5E-11 73.7 8.2 106 85-194 67-196 (319)
163 COG0421 SpeE Spermidine syntha 98.4 1.1E-06 2.3E-11 72.6 7.4 95 98-194 77-189 (282)
164 COG0220 Predicted S-adenosylme 98.4 1.2E-06 2.5E-11 70.2 7.3 95 99-195 50-164 (227)
165 PRK00274 ksgA 16S ribosomal RN 98.4 1.7E-06 3.7E-11 71.7 8.4 76 84-163 30-112 (272)
166 PRK10909 rsmD 16S rRNA m(2)G96 98.4 1.2E-06 2.7E-11 68.8 7.2 95 96-195 52-159 (199)
167 PRK14896 ksgA 16S ribosomal RN 98.4 1.4E-06 2.9E-11 71.7 7.4 80 84-167 17-102 (258)
168 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.8E-06 3.9E-11 76.5 8.5 100 84-193 285-398 (443)
169 PF05185 PRMT5: PRMT5 arginine 98.3 4.6E-07 1E-11 79.7 4.4 125 59-192 152-294 (448)
170 KOG1661 Protein-L-isoaspartate 98.3 1.1E-06 2.4E-11 67.9 6.0 99 87-194 71-192 (237)
171 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.1E-06 2.3E-11 82.0 6.8 96 97-194 538-655 (702)
172 PLN02589 caffeoyl-CoA O-methyl 98.3 1.4E-06 3.1E-11 70.6 6.7 97 96-198 78-193 (247)
173 PF09243 Rsm22: Mitochondrial 98.3 2.7E-06 5.9E-11 70.4 8.4 112 85-199 22-143 (274)
174 PRK15128 23S rRNA m(5)C1962 me 98.3 2.8E-06 6E-11 73.8 8.3 99 96-196 219-340 (396)
175 PF11968 DUF3321: Putative met 98.3 1.3E-05 2.7E-10 62.9 10.9 118 98-250 52-181 (219)
176 PRK04148 hypothetical protein; 98.3 9.1E-06 2E-10 59.2 9.0 97 86-194 6-108 (134)
177 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 6.4E-07 1.4E-11 72.7 3.3 131 97-249 56-238 (256)
178 PRK00536 speE spermidine synth 98.2 6.2E-06 1.3E-10 67.3 8.5 89 95-194 70-170 (262)
179 PTZ00338 dimethyladenosine tra 98.2 7.2E-06 1.6E-10 68.4 8.6 90 84-178 24-122 (294)
180 COG2521 Predicted archaeal met 98.2 1.9E-05 4.1E-10 62.3 9.7 131 95-250 132-277 (287)
181 TIGR00478 tly hemolysin TlyA f 98.2 1.2E-05 2.7E-10 64.4 8.5 136 85-250 63-217 (228)
182 KOG1500 Protein arginine N-met 98.2 7.5E-06 1.6E-10 67.8 7.3 101 86-192 167-279 (517)
183 PF01564 Spermine_synth: Sperm 98.1 1.8E-06 4E-11 70.3 3.3 99 96-195 75-191 (246)
184 PF03141 Methyltransf_29: Puta 98.0 2.9E-06 6.2E-11 74.0 2.8 97 98-199 118-223 (506)
185 KOG1331 Predicted methyltransf 98.0 9E-06 2E-10 66.0 5.0 102 85-194 36-142 (293)
186 PRK03522 rumB 23S rRNA methylu 98.0 1.7E-05 3.7E-10 67.2 7.0 64 97-163 173-247 (315)
187 COG2263 Predicted RNA methylas 98.0 1.4E-05 3E-10 61.1 5.7 68 97-166 45-118 (198)
188 PF04816 DUF633: Family of unk 98.0 3.2E-05 6.9E-10 61.1 7.9 113 101-250 1-124 (205)
189 COG4798 Predicted methyltransf 98.0 0.0001 2.3E-09 56.5 10.2 138 94-249 45-204 (238)
190 KOG0820 Ribosomal RNA adenine 98.0 2.2E-05 4.8E-10 63.2 6.6 75 84-162 46-129 (315)
191 COG5459 Predicted rRNA methyla 98.0 5.3E-06 1.1E-10 69.0 3.1 112 87-199 104-229 (484)
192 TIGR00479 rumA 23S rRNA (uraci 98.0 7E-06 1.5E-10 72.6 4.0 100 85-193 281-394 (431)
193 PRK01544 bifunctional N5-gluta 97.9 4.5E-05 9.8E-10 68.6 8.7 97 97-195 347-462 (506)
194 KOG1499 Protein arginine N-met 97.9 2.1E-05 4.5E-10 65.8 5.7 96 95-192 58-164 (346)
195 TIGR00095 RNA methyltransferas 97.9 2.9E-05 6.4E-10 60.7 5.6 93 97-194 49-158 (189)
196 PF07942 N2227: N2227-like pro 97.9 0.00071 1.5E-08 55.5 13.8 135 96-250 55-242 (270)
197 PF02527 GidB: rRNA small subu 97.9 1.8E-05 3.9E-10 61.4 4.2 90 100-196 51-149 (184)
198 COG0293 FtsJ 23S rRNA methylas 97.9 0.00021 4.5E-09 55.9 9.9 109 85-198 33-162 (205)
199 PRK00050 16S rRNA m(4)C1402 me 97.8 3.8E-05 8.2E-10 63.9 6.1 67 84-152 7-79 (296)
200 TIGR02085 meth_trns_rumB 23S r 97.8 4.1E-05 9E-10 66.3 6.2 90 97-194 233-333 (374)
201 PRK11933 yebU rRNA (cytosine-C 97.8 0.00016 3.6E-09 64.1 10.0 104 95-199 111-246 (470)
202 PF01728 FtsJ: FtsJ-like methy 97.8 2.3E-05 4.9E-10 60.9 4.0 107 85-196 9-140 (181)
203 COG0030 KsgA Dimethyladenosine 97.8 0.00018 3.9E-09 58.5 8.7 84 84-172 18-110 (259)
204 KOG3191 Predicted N6-DNA-methy 97.8 0.00033 7.2E-09 53.3 9.3 97 98-195 44-168 (209)
205 PRK11760 putative 23S rRNA C24 97.7 0.00018 3.9E-09 60.5 8.2 96 95-199 209-308 (357)
206 KOG3115 Methyltransferase-like 97.6 8.5E-05 1.8E-09 57.4 4.2 98 98-196 61-184 (249)
207 PF01269 Fibrillarin: Fibrilla 97.6 0.00075 1.6E-08 53.3 9.5 134 94-253 70-215 (229)
208 KOG2798 Putative trehalase [Ca 97.6 0.0017 3.6E-08 53.7 11.4 150 84-250 134-337 (369)
209 COG4262 Predicted spermidine s 97.5 0.00035 7.5E-09 58.8 7.4 100 96-196 288-408 (508)
210 COG0357 GidB Predicted S-adeno 97.5 0.00018 3.8E-09 57.0 5.2 89 98-193 68-166 (215)
211 COG3897 Predicted methyltransf 97.5 0.001 2.3E-08 51.2 9.0 104 94-201 76-185 (218)
212 KOG3987 Uncharacterized conser 97.5 3E-05 6.5E-10 60.0 0.5 138 97-252 112-262 (288)
213 PRK04338 N(2),N(2)-dimethylgua 97.5 0.00017 3.7E-09 62.5 5.2 90 98-194 58-157 (382)
214 KOG2940 Predicted methyltransf 97.5 0.00015 3.2E-09 57.2 4.2 94 96-193 71-172 (325)
215 COG0500 SmtA SAM-dependent met 97.4 0.0014 3.1E-08 48.6 9.2 95 101-200 52-160 (257)
216 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00035 7.6E-09 57.6 6.0 97 84-188 18-124 (262)
217 COG4301 Uncharacterized conser 97.4 0.00033 7.1E-09 55.9 5.5 98 97-195 78-193 (321)
218 COG4076 Predicted RNA methylas 97.4 0.00029 6.4E-09 53.8 4.8 95 99-196 34-136 (252)
219 PF02475 Met_10: Met-10+ like- 97.4 0.00017 3.7E-09 56.7 3.6 91 95-192 99-199 (200)
220 COG1889 NOP1 Fibrillarin-like 97.4 0.015 3.3E-07 45.2 13.8 132 94-252 73-216 (231)
221 TIGR02143 trmA_only tRNA (urac 97.4 0.00028 6.1E-09 60.7 5.1 51 99-152 199-256 (353)
222 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00035 7.7E-09 60.3 4.7 51 99-152 208-265 (362)
223 KOG3420 Predicted RNA methylas 97.2 0.00042 9.2E-09 50.7 3.9 69 97-167 48-125 (185)
224 PF13679 Methyltransf_32: Meth 97.2 0.00073 1.6E-08 50.2 5.2 91 95-193 23-129 (141)
225 PF01170 UPF0020: Putative RNA 97.2 0.0023 5E-08 49.5 8.0 107 86-193 18-149 (179)
226 COG2384 Predicted SAM-dependen 97.2 0.0061 1.3E-07 48.0 10.0 91 98-193 17-118 (226)
227 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0038 8.3E-08 51.3 9.5 143 97-248 81-248 (260)
228 PF13578 Methyltransf_24: Meth 97.1 0.00016 3.5E-09 50.8 1.1 90 102-195 1-105 (106)
229 KOG1709 Guanidinoacetate methy 97.1 0.0042 9.1E-08 48.7 8.7 113 82-199 88-210 (271)
230 PF04989 CmcI: Cephalosporin h 97.1 0.0013 2.8E-08 51.6 5.8 99 98-199 33-151 (206)
231 KOG3201 Uncharacterized conser 97.1 0.00025 5.5E-09 52.8 1.7 95 98-195 30-140 (201)
232 PF09445 Methyltransf_15: RNA 97.0 0.00022 4.8E-09 54.0 1.0 60 100-162 2-75 (163)
233 KOG2915 tRNA(1-methyladenosine 97.0 0.0075 1.6E-07 49.0 9.6 124 63-198 71-213 (314)
234 KOG1663 O-methyltransferase [S 97.0 0.0041 8.9E-08 49.3 7.9 98 97-200 73-188 (237)
235 COG1189 Predicted rRNA methyla 97.0 0.01 2.2E-07 47.4 10.0 149 85-250 67-224 (245)
236 PF03059 NAS: Nicotianamine sy 97.0 0.0029 6.3E-08 52.1 6.9 95 98-194 121-229 (276)
237 TIGR01444 fkbM_fam methyltrans 96.9 0.0011 2.4E-08 49.1 3.8 51 100-151 1-58 (143)
238 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.0081 1.8E-07 56.5 10.2 112 83-196 176-348 (702)
239 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0015 3.3E-08 55.2 4.9 100 95-195 44-183 (311)
240 COG1092 Predicted SAM-dependen 96.8 0.0034 7.4E-08 54.3 6.7 99 97-198 217-339 (393)
241 TIGR02987 met_A_Alw26 type II 96.8 0.005 1.1E-07 55.9 7.8 65 97-162 31-118 (524)
242 KOG2730 Methylase [General fun 96.8 0.0038 8.2E-08 49.1 6.0 90 97-189 94-196 (263)
243 PF03602 Cons_hypoth95: Conser 96.8 0.0014 3E-08 50.9 3.5 96 97-197 42-154 (183)
244 KOG1269 SAM-dependent methyltr 96.7 0.0026 5.7E-08 54.6 4.6 102 96-201 109-221 (364)
245 PF03141 Methyltransf_29: Puta 96.5 0.0028 6.1E-08 55.8 4.1 99 95-196 363-468 (506)
246 PLN02668 indole-3-acetate carb 96.5 0.061 1.3E-06 46.6 12.1 102 97-199 63-241 (386)
247 KOG4589 Cell division protein 96.5 0.016 3.6E-07 44.5 7.5 101 90-196 62-185 (232)
248 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.0056 1.2E-07 52.9 5.7 91 98-194 45-146 (374)
249 COG0144 Sun tRNA and rRNA cyto 96.5 0.036 7.9E-07 47.7 10.6 112 88-201 148-294 (355)
250 COG1041 Predicted DNA modifica 96.4 0.046 1E-06 46.3 10.5 100 94-196 194-311 (347)
251 PF11312 DUF3115: Protein of u 96.4 0.017 3.8E-07 48.0 7.9 99 98-197 87-244 (315)
252 PF10672 Methyltrans_SAM: S-ad 96.4 0.0031 6.7E-08 52.4 3.4 98 97-196 123-239 (286)
253 COG2520 Predicted methyltransf 96.4 0.025 5.5E-07 48.0 8.8 98 96-201 187-295 (341)
254 COG4627 Uncharacterized protei 96.3 0.0012 2.6E-08 48.9 0.6 39 158-196 49-87 (185)
255 PF07091 FmrO: Ribosomal RNA m 96.3 0.0029 6.3E-08 51.0 2.5 98 96-196 104-209 (251)
256 COG3315 O-Methyltransferase in 96.0 0.022 4.8E-07 47.7 6.5 145 98-248 93-262 (297)
257 PF03492 Methyltransf_7: SAM d 95.9 0.097 2.1E-06 44.7 10.1 105 95-200 14-188 (334)
258 COG1064 AdhP Zn-dependent alco 95.8 0.099 2.1E-06 44.4 9.4 93 94-197 163-261 (339)
259 TIGR00006 S-adenosyl-methyltra 95.7 0.027 5.9E-07 47.2 6.0 67 84-152 8-80 (305)
260 KOG2793 Putative N2,N2-dimethy 95.6 0.054 1.2E-06 43.9 6.9 97 95-195 83-199 (248)
261 KOG2352 Predicted spermine/spe 95.5 0.075 1.6E-06 46.9 7.9 96 99-197 50-163 (482)
262 PF01795 Methyltransf_5: MraW 95.4 0.034 7.4E-07 46.6 5.5 65 84-150 8-78 (310)
263 KOG3924 Putative protein methy 95.4 0.051 1.1E-06 46.6 6.3 111 85-200 181-313 (419)
264 PF06859 Bin3: Bicoid-interact 95.3 0.0066 1.4E-07 42.4 0.9 36 158-193 3-42 (110)
265 KOG1562 Spermidine synthase [A 95.3 0.032 7E-07 46.0 4.9 99 96-195 120-236 (337)
266 KOG2187 tRNA uracil-5-methyltr 95.3 0.028 6E-07 49.8 4.8 62 88-153 375-443 (534)
267 COG0116 Predicted N6-adenine-s 95.2 0.22 4.7E-06 42.9 9.6 111 84-195 179-344 (381)
268 COG0742 N6-adenine-specific me 95.1 0.086 1.9E-06 40.8 6.3 97 97-195 43-154 (187)
269 KOG2918 Carboxymethyl transfer 95.0 0.31 6.8E-06 40.6 9.7 143 95-251 85-278 (335)
270 PF05958 tRNA_U5-meth_tr: tRNA 94.6 0.013 2.9E-07 50.4 1.0 62 84-150 185-253 (352)
271 PF04072 LCM: Leucine carboxyl 94.5 0.065 1.4E-06 41.6 4.5 84 98-182 79-183 (183)
272 KOG1099 SAM-dependent methyltr 94.2 0.1 2.2E-06 41.5 4.9 96 94-193 38-161 (294)
273 COG2265 TrmA SAM-dependent met 94.2 0.031 6.8E-07 49.3 2.3 100 84-193 281-394 (432)
274 PF01861 DUF43: Protein of unk 93.8 1.7 3.8E-05 35.0 11.3 89 97-190 44-143 (243)
275 COG0275 Predicted S-adenosylme 93.8 0.18 4E-06 41.9 5.9 67 84-151 11-83 (314)
276 PF07757 AdoMet_MTase: Predict 93.7 0.066 1.4E-06 37.3 2.7 32 96-130 57-88 (112)
277 PF11899 DUF3419: Protein of u 93.4 0.15 3.2E-06 44.3 5.1 59 141-199 275-338 (380)
278 KOG4058 Uncharacterized conser 93.1 0.25 5.5E-06 36.6 5.0 106 86-200 62-177 (199)
279 cd08283 FDH_like_1 Glutathione 92.8 1.1 2.3E-05 39.1 9.5 99 95-196 182-307 (386)
280 PF05711 TylF: Macrocin-O-meth 92.7 0.19 4.1E-06 40.9 4.4 98 98-197 75-214 (248)
281 KOG0822 Protein kinase inhibit 92.7 0.61 1.3E-05 41.8 7.7 125 59-192 334-475 (649)
282 COG3510 CmcI Cephalosporin hyd 92.4 1.3 2.9E-05 34.4 8.2 102 98-202 70-187 (237)
283 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.2 0.22 4.8E-06 41.5 4.3 109 89-199 78-223 (283)
284 PF10354 DUF2431: Domain of un 92.0 1.8 4E-05 33.0 8.8 93 103-195 2-125 (166)
285 PRK09424 pntA NAD(P) transhydr 90.3 2.2 4.8E-05 38.7 8.9 95 96-196 163-286 (509)
286 COG1565 Uncharacterized conser 89.6 0.8 1.7E-05 39.2 5.2 63 65-133 50-121 (370)
287 PRK10742 putative methyltransf 88.8 0.8 1.7E-05 37.2 4.5 45 85-133 75-122 (250)
288 PF06962 rRNA_methylase: Putat 88.7 0.6 1.3E-05 34.4 3.5 72 125-196 2-93 (140)
289 COG1063 Tdh Threonine dehydrog 88.7 3.1 6.8E-05 35.8 8.5 94 98-200 169-274 (350)
290 PF02153 PDH: Prephenate dehyd 88.3 0.84 1.8E-05 37.5 4.5 75 111-192 1-76 (258)
291 KOG1596 Fibrillarin and relate 88.0 4.9 0.00011 32.6 8.3 97 94-195 153-261 (317)
292 PRK07502 cyclohexadienyl dehyd 87.6 3.4 7.4E-05 34.8 7.9 90 98-193 6-98 (307)
293 PRK11730 fadB multifunctional 86.9 3.7 8.1E-05 39.0 8.5 151 98-254 313-497 (715)
294 cd01842 SGNH_hydrolase_like_5 86.8 1.5 3.3E-05 33.6 4.8 41 158-198 52-102 (183)
295 KOG1501 Arginine N-methyltrans 85.9 0.87 1.9E-05 39.9 3.4 88 99-188 68-168 (636)
296 PF11599 AviRa: RRNA methyltra 85.7 7.5 0.00016 31.0 8.1 101 95-195 49-214 (246)
297 COG0287 TyrA Prephenate dehydr 85.4 4.9 0.00011 33.4 7.6 85 99-190 4-93 (279)
298 PF05206 TRM13: Methyltransfer 85.3 1.6 3.5E-05 35.8 4.6 36 94-130 15-55 (259)
299 TIGR02437 FadB fatty oxidation 84.8 4.8 0.0001 38.3 8.0 152 97-254 312-497 (714)
300 COG2933 Predicted SAM-dependen 84.7 2.6 5.5E-05 34.6 5.3 85 95-188 209-296 (358)
301 KOG2539 Mitochondrial/chloropl 84.4 3.5 7.6E-05 36.5 6.4 101 98-199 201-319 (491)
302 PF03514 GRAS: GRAS domain fam 84.3 7.4 0.00016 33.9 8.5 44 85-130 99-149 (374)
303 PRK07417 arogenate dehydrogena 84.2 5.9 0.00013 32.8 7.7 81 100-189 2-85 (279)
304 PF07279 DUF1442: Protein of u 84.1 11 0.00023 30.1 8.4 96 98-200 42-153 (218)
305 PRK11154 fadJ multifunctional 83.7 6.3 0.00014 37.5 8.4 152 97-254 308-494 (708)
306 PRK01747 mnmC bifunctional tRN 83.5 3.1 6.8E-05 39.1 6.3 92 97-193 57-204 (662)
307 KOG1209 1-Acyl dihydroxyaceton 83.1 21 0.00046 28.6 9.6 75 97-193 6-84 (289)
308 TIGR02441 fa_ox_alpha_mit fatt 81.9 6.4 0.00014 37.6 7.7 152 97-254 334-519 (737)
309 KOG0024 Sorbitol dehydrogenase 81.5 6.4 0.00014 33.4 6.6 97 94-199 166-277 (354)
310 PHA01634 hypothetical protein 81.2 2 4.4E-05 31.1 3.1 40 97-138 28-68 (156)
311 COG1255 Uncharacterized protei 80.1 19 0.00041 25.7 8.4 83 98-193 14-100 (129)
312 PF05971 Methyltransf_10: Prot 80.0 2.8 6.1E-05 35.2 4.1 71 98-169 103-190 (299)
313 PF02636 Methyltransf_28: Puta 79.7 1.9 4.2E-05 35.2 3.1 27 173-199 172-198 (252)
314 TIGR01202 bchC 2-desacetyl-2-h 79.5 12 0.00027 31.3 8.0 86 97-196 144-232 (308)
315 PF01210 NAD_Gly3P_dh_N: NAD-d 79.1 2 4.3E-05 32.3 2.8 88 100-194 1-102 (157)
316 PRK05225 ketol-acid reductoiso 79.1 2.3 5.1E-05 37.8 3.5 92 97-197 35-133 (487)
317 PF02254 TrkA_N: TrkA-N domain 78.5 1.8 3.8E-05 30.4 2.2 81 106-193 4-94 (116)
318 PF14740 DUF4471: Domain of un 77.3 1.7 3.6E-05 36.3 2.0 78 142-247 201-286 (289)
319 cd08237 ribitol-5-phosphate_DH 76.7 13 0.00028 31.7 7.4 94 95-196 161-257 (341)
320 PRK07066 3-hydroxybutyryl-CoA 76.7 11 0.00025 32.0 6.9 89 98-193 7-117 (321)
321 PRK07819 3-hydroxybutyryl-CoA 76.6 14 0.0003 30.8 7.4 150 99-254 6-191 (286)
322 PRK13699 putative methylase; P 76.4 4.6 9.9E-05 32.5 4.3 20 174-193 51-70 (227)
323 TIGR02440 FadJ fatty oxidation 76.3 14 0.0003 35.1 8.1 150 98-254 304-489 (699)
324 PF03686 UPF0146: Uncharacteri 75.7 6.7 0.00014 28.4 4.5 84 98-195 14-102 (127)
325 PF03721 UDPG_MGDP_dh_N: UDP-g 75.7 3.8 8.2E-05 31.8 3.5 99 99-200 1-124 (185)
326 PRK09880 L-idonate 5-dehydroge 75.7 11 0.00023 32.1 6.7 92 96-196 168-267 (343)
327 PRK15001 SAM-dependent 23S rib 75.6 13 0.00028 32.5 7.1 89 100-197 47-144 (378)
328 cd05213 NAD_bind_Glutamyl_tRNA 75.5 22 0.00047 30.1 8.3 97 97-201 177-277 (311)
329 PRK07530 3-hydroxybutyryl-CoA 74.2 29 0.00063 28.9 8.8 151 98-254 4-188 (292)
330 PRK08507 prephenate dehydrogen 74.2 15 0.00033 30.3 7.0 83 100-191 2-87 (275)
331 COG0686 Ald Alanine dehydrogen 73.7 8.5 0.00018 32.5 5.2 91 98-192 168-265 (371)
332 PF00107 ADH_zinc_N: Zinc-bind 73.7 6.8 0.00015 27.9 4.3 82 107-198 1-92 (130)
333 COG0373 HemA Glutamyl-tRNA red 73.5 19 0.00042 31.7 7.6 98 97-203 177-280 (414)
334 KOG2651 rRNA adenine N-6-methy 73.5 4.5 9.7E-05 35.0 3.6 35 94-130 150-184 (476)
335 PF08484 Methyltransf_14: C-me 72.7 18 0.00039 27.4 6.5 89 96-193 66-157 (160)
336 PRK09260 3-hydroxybutyryl-CoA 72.6 25 0.00055 29.2 8.0 147 100-254 3-186 (288)
337 KOG2352 Predicted spermine/spe 72.4 5 0.00011 35.8 3.8 127 66-197 267-418 (482)
338 PRK06719 precorrin-2 dehydroge 71.9 34 0.00073 25.7 7.8 63 97-163 12-77 (157)
339 cd08254 hydroxyacyl_CoA_DH 6-h 71.8 33 0.00072 28.7 8.8 92 94-196 162-264 (338)
340 PLN02494 adenosylhomocysteinas 71.6 14 0.0003 33.2 6.3 101 84-196 240-342 (477)
341 PF10237 N6-adenineMlase: Prob 71.5 42 0.00091 25.5 10.8 93 97-197 25-125 (162)
342 TIGR00006 S-adenosyl-methyltra 70.8 5.5 0.00012 33.6 3.6 28 172-199 217-244 (305)
343 COG0604 Qor NADPH:quinone redu 70.5 9.9 0.00021 32.4 5.2 95 94-198 139-244 (326)
344 cd05188 MDR Medium chain reduc 69.8 39 0.00084 27.0 8.5 93 95-197 132-234 (271)
345 COG0275 Predicted S-adenosylme 69.7 6.4 0.00014 33.0 3.6 29 172-200 221-249 (314)
346 cd00315 Cyt_C5_DNA_methylase C 69.6 42 0.00091 27.8 8.6 66 100-167 2-73 (275)
347 TIGR00561 pntA NAD(P) transhyd 69.5 13 0.00028 33.8 5.8 91 97-192 163-281 (511)
348 PF07109 Mg-por_mtran_C: Magne 69.4 34 0.00073 23.5 6.8 75 164-251 3-83 (97)
349 PF07991 IlvN: Acetohydroxy ac 69.3 8 0.00017 29.4 3.8 91 98-197 4-97 (165)
350 COG5379 BtaA S-adenosylmethion 69.3 5.8 0.00013 33.1 3.3 66 132-197 297-368 (414)
351 PF01555 N6_N4_Mtase: DNA meth 68.8 5.9 0.00013 31.2 3.3 49 84-137 180-229 (231)
352 COG1748 LYS9 Saccharopine dehy 68.6 34 0.00074 30.0 8.0 63 99-162 2-74 (389)
353 cd00401 AdoHcyase S-adenosyl-L 68.1 31 0.00067 30.5 7.8 97 86-195 190-289 (413)
354 PRK09489 rsmC 16S ribosomal RN 67.9 45 0.00097 28.7 8.6 94 97-197 19-114 (342)
355 PF03269 DUF268: Caenorhabditi 67.9 7.3 0.00016 29.5 3.3 26 175-200 91-116 (177)
356 PRK05562 precorrin-2 dehydroge 67.8 37 0.00081 27.3 7.6 63 97-163 24-92 (223)
357 PF13319 DUF4090: Protein of u 67.4 4.7 0.0001 26.1 1.9 32 223-254 53-84 (84)
358 KOG2666 UDP-glucose/GDP-mannos 67.4 6.2 0.00014 33.3 3.1 36 99-135 2-40 (481)
359 KOG2198 tRNA cytosine-5-methyl 67.0 28 0.0006 30.2 6.9 27 94-120 152-178 (375)
360 TIGR01470 cysG_Nterm siroheme 67.0 19 0.00041 28.5 5.8 62 98-163 9-76 (205)
361 PRK06545 prephenate dehydrogen 66.2 33 0.00072 29.6 7.6 30 155-189 59-89 (359)
362 PRK00050 16S rRNA m(4)C1402 me 65.8 8.1 0.00018 32.5 3.6 29 172-200 213-241 (296)
363 PTZ00357 methyltransferase; Pr 65.3 18 0.0004 34.1 5.9 153 35-190 618-830 (1072)
364 COG0541 Ffh Signal recognition 64.9 31 0.00068 30.6 7.0 103 97-200 99-226 (451)
365 PF05430 Methyltransf_30: S-ad 64.7 6 0.00013 28.5 2.3 41 176-250 71-111 (124)
366 PRK06223 malate dehydrogenase; 63.4 50 0.0011 27.7 8.0 93 99-194 3-118 (307)
367 PRK05479 ketol-acid reductoiso 63.3 23 0.00049 30.3 5.9 88 98-194 17-107 (330)
368 PRK12491 pyrroline-5-carboxyla 63.1 41 0.00089 27.8 7.3 84 99-189 3-91 (272)
369 PRK08293 3-hydroxybutyryl-CoA 63.0 44 0.00095 27.8 7.6 90 99-193 4-118 (287)
370 PF02737 3HCDH_N: 3-hydroxyacy 62.6 27 0.00058 26.9 5.8 94 100-199 1-118 (180)
371 PTZ00117 malate dehydrogenase; 62.4 57 0.0012 27.7 8.2 95 97-194 4-121 (319)
372 PF01358 PARP_regulatory: Poly 62.2 36 0.00079 28.4 6.6 81 97-201 58-141 (294)
373 cd08230 glucose_DH Glucose deh 62.1 37 0.0008 29.0 7.2 92 96-198 171-272 (355)
374 KOG2920 Predicted methyltransf 61.6 6.7 0.00015 32.5 2.3 37 96-134 115-152 (282)
375 PRK07680 late competence prote 60.5 43 0.00094 27.5 7.0 87 100-193 2-94 (273)
376 PRK08818 prephenate dehydrogen 59.8 36 0.00078 29.7 6.6 73 98-189 4-82 (370)
377 PRK07574 formate dehydrogenase 59.4 33 0.00071 30.1 6.3 87 98-192 192-281 (385)
378 TIGR02822 adh_fam_2 zinc-bindi 59.3 93 0.002 26.3 9.1 91 94-196 162-255 (329)
379 PRK07679 pyrroline-5-carboxyla 58.5 55 0.0012 27.0 7.4 89 98-193 3-97 (279)
380 cd08232 idonate-5-DH L-idonate 58.4 81 0.0018 26.5 8.6 90 97-195 165-262 (339)
381 PF04445 SAM_MT: Putative SAM- 58.3 11 0.00023 30.5 2.9 78 85-166 62-161 (234)
382 PLN03139 formate dehydrogenase 57.8 28 0.00061 30.5 5.6 86 98-192 199-288 (386)
383 PF01795 Methyltransf_5: MraW 57.6 6.9 0.00015 33.0 1.8 27 172-198 218-244 (310)
384 PRK11524 putative methyltransf 57.4 12 0.00027 31.1 3.3 21 174-194 59-79 (284)
385 PRK11064 wecC UDP-N-acetyl-D-m 57.1 49 0.0011 29.3 7.1 94 99-196 4-120 (415)
386 PRK13403 ketol-acid reductoiso 57.0 34 0.00073 29.3 5.7 89 98-196 16-107 (335)
387 PRK03659 glutathione-regulated 56.9 29 0.00062 32.4 5.9 86 99-193 401-496 (601)
388 PRK10669 putative cation:proto 56.8 29 0.00063 32.0 5.9 87 99-194 418-514 (558)
389 PF12692 Methyltransf_17: S-ad 56.5 21 0.00046 26.6 3.9 99 98-198 29-137 (160)
390 PRK06035 3-hydroxyacyl-CoA deh 56.3 85 0.0018 26.1 8.2 25 230-254 166-190 (291)
391 cd08281 liver_ADH_like1 Zinc-d 55.7 1.2E+02 0.0026 26.1 9.3 94 95-197 189-292 (371)
392 PF06557 DUF1122: Protein of u 55.7 20 0.00043 27.1 3.7 58 173-248 64-121 (170)
393 PRK11524 putative methyltransf 55.5 20 0.00044 29.8 4.3 51 84-139 197-248 (284)
394 COG2085 Predicted dinucleotide 54.3 21 0.00046 28.3 3.9 84 107-199 8-95 (211)
395 cd08234 threonine_DH_like L-th 53.5 1.3E+02 0.0029 25.0 9.5 93 94-196 156-258 (334)
396 PRK08655 prephenate dehydrogen 53.4 58 0.0013 29.1 7.0 84 100-192 2-89 (437)
397 PRK12921 2-dehydropantoate 2-r 52.9 1.3E+02 0.0027 25.0 8.8 86 100-194 2-101 (305)
398 cd08255 2-desacetyl-2-hydroxye 52.5 1.2E+02 0.0027 24.4 8.8 92 94-195 94-190 (277)
399 PHA03108 poly(A) polymerase sm 52.5 83 0.0018 26.2 7.1 79 98-200 61-143 (300)
400 PLN02353 probable UDP-glucose 52.2 1.3E+02 0.0029 27.1 9.1 99 99-200 2-131 (473)
401 TIGR00675 dcm DNA-methyltransf 51.9 75 0.0016 26.9 7.2 61 101-164 1-67 (315)
402 PRK03562 glutathione-regulated 51.6 55 0.0012 30.7 6.9 88 98-193 400-496 (621)
403 PRK08410 2-hydroxyacid dehydro 51.6 38 0.00082 28.7 5.4 31 98-130 145-176 (311)
404 PF01555 N6_N4_Mtase: DNA meth 51.5 9.8 0.00021 29.9 1.8 22 173-194 34-55 (231)
405 COG0059 IlvC Ketol-acid reduct 51.4 66 0.0014 27.2 6.4 90 98-196 18-110 (338)
406 PRK15469 ghrA bifunctional gly 50.9 1.1E+02 0.0023 26.0 7.9 84 97-192 135-223 (312)
407 PLN02688 pyrroline-5-carboxyla 50.2 82 0.0018 25.6 7.1 85 100-192 2-92 (266)
408 TIGR02825 B4_12hDH leukotriene 49.9 1.3E+02 0.0029 25.1 8.5 92 94-196 135-238 (325)
409 TIGR00936 ahcY adenosylhomocys 49.8 91 0.002 27.6 7.5 88 96-196 193-283 (406)
410 TIGR03376 glycerol3P_DH glycer 49.7 1.5E+02 0.0032 25.6 8.7 35 155-194 81-115 (342)
411 COG0270 Dcm Site-specific DNA 49.6 1.2E+02 0.0025 25.9 8.1 120 98-244 3-141 (328)
412 PRK13243 glyoxylate reductase; 49.6 33 0.00072 29.3 4.8 86 98-193 150-238 (333)
413 KOG1197 Predicted quinone oxid 49.3 1.5E+02 0.0033 24.6 8.8 99 88-197 138-247 (336)
414 KOG1098 Putative SAM-dependent 49.3 26 0.00057 32.5 4.1 106 88-198 35-160 (780)
415 cd05278 FDH_like Formaldehyde 49.1 1.1E+02 0.0024 25.7 8.0 92 95-195 165-267 (347)
416 TIGR01692 HIBADH 3-hydroxyisob 48.9 68 0.0015 26.6 6.5 79 107-192 3-87 (288)
417 TIGR00518 alaDH alanine dehydr 48.9 21 0.00045 31.1 3.4 92 97-192 166-264 (370)
418 KOG0023 Alcohol dehydrogenase, 48.9 38 0.00083 28.9 4.8 94 94-196 178-280 (360)
419 TIGR03026 NDP-sugDHase nucleot 48.7 1.9E+02 0.0041 25.5 10.1 94 100-195 2-120 (411)
420 TIGR03451 mycoS_dep_FDH mycoth 47.9 1.8E+02 0.0038 24.8 9.5 94 95-197 174-278 (358)
421 PF10017 Methyltransf_33: Hist 47.9 19 0.0004 26.1 2.6 23 227-249 94-116 (127)
422 cd05290 LDH_3 A subgroup of L- 47.6 80 0.0017 26.7 6.7 94 101-195 2-119 (307)
423 TIGR03366 HpnZ_proposed putati 47.5 1.2E+02 0.0025 24.9 7.7 93 96-197 119-220 (280)
424 PF03446 NAD_binding_2: NAD bi 47.4 20 0.00043 27.0 2.8 88 100-197 3-96 (163)
425 PRK13699 putative methylase; P 46.9 58 0.0013 26.1 5.5 51 84-139 152-203 (227)
426 PRK14806 bifunctional cyclohex 46.8 96 0.0021 29.7 7.8 85 99-189 4-91 (735)
427 PF02826 2-Hacid_dh_C: D-isome 46.6 9.1 0.0002 29.4 0.8 88 97-192 35-124 (178)
428 KOG2782 Putative SAM dependent 46.6 22 0.00048 28.5 2.9 46 84-131 31-76 (303)
429 PF07101 DUF1363: Protein of u 46.5 8.4 0.00018 26.1 0.5 19 102-120 7-25 (124)
430 PF03574 Peptidase_S48: Peptid 46.4 17 0.00037 25.9 2.0 29 165-193 13-41 (149)
431 KOG0257 Kynurenine aminotransf 46.2 1.5E+02 0.0033 26.1 8.1 100 98-199 94-215 (420)
432 TIGR00872 gnd_rel 6-phosphoglu 46.1 77 0.0017 26.5 6.4 82 100-191 2-89 (298)
433 PRK09273 hypothetical protein; 46.1 20 0.00044 28.4 2.6 39 100-139 65-103 (211)
434 PLN00112 malate dehydrogenase 46.0 1.3E+02 0.0028 27.0 7.9 100 94-195 96-226 (444)
435 KOG1227 Putative methyltransfe 45.9 6.8 0.00015 32.8 0.0 94 98-201 195-303 (351)
436 PRK06928 pyrroline-5-carboxyla 45.8 1.2E+02 0.0025 25.1 7.4 87 100-193 3-96 (277)
437 PLN02545 3-hydroxybutyryl-CoA 45.7 1.6E+02 0.0035 24.4 8.3 87 98-192 4-116 (295)
438 PRK06522 2-dehydropantoate 2-r 45.4 1.3E+02 0.0028 24.9 7.7 87 100-195 2-100 (304)
439 COG1179 Dinucleotide-utilizing 45.3 48 0.001 27.0 4.6 34 98-132 30-64 (263)
440 PRK09496 trkA potassium transp 44.7 1.1E+02 0.0023 27.2 7.4 86 100-193 2-97 (453)
441 PF03486 HI0933_like: HI0933-l 44.6 9.9 0.00021 33.6 0.8 47 100-147 2-51 (409)
442 PRK00066 ldh L-lactate dehydro 44.4 95 0.0021 26.3 6.7 98 96-195 4-122 (315)
443 PTZ00082 L-lactate dehydrogena 44.4 1.6E+02 0.0035 25.0 8.1 65 98-164 6-82 (321)
444 PF05050 Methyltransf_21: Meth 44.3 32 0.00068 25.4 3.5 32 103-135 1-37 (167)
445 TIGR01763 MalateDH_bact malate 44.3 1.5E+02 0.0033 25.0 7.9 92 99-195 2-118 (305)
446 PRK00045 hemA glutamyl-tRNA re 44.0 1.7E+02 0.0036 26.0 8.4 99 96-201 180-284 (423)
447 COG1893 ApbA Ketopantoate redu 43.9 2E+02 0.0043 24.3 8.6 89 99-196 1-102 (307)
448 TIGR02279 PaaC-3OHAcCoADH 3-hy 43.6 1.3E+02 0.0028 27.5 7.8 150 98-254 5-189 (503)
449 KOG3851 Sulfide:quinone oxidor 43.6 38 0.00081 29.0 3.9 33 97-130 38-72 (446)
450 TIGR02764 spore_ybaN_pdaB poly 43.6 31 0.00067 26.6 3.4 56 169-249 133-188 (191)
451 PRK05476 S-adenosyl-L-homocyst 43.1 64 0.0014 28.7 5.6 87 97-196 211-300 (425)
452 PRK06718 precorrin-2 dehydroge 42.9 1.5E+02 0.0033 23.2 7.3 63 97-163 9-77 (202)
453 PRK11880 pyrroline-5-carboxyla 42.4 1E+02 0.0022 25.1 6.5 80 99-185 3-86 (267)
454 KOG1122 tRNA and rRNA cytosine 42.2 1.1E+02 0.0024 27.2 6.7 107 95-201 239-377 (460)
455 cd05294 LDH-like_MDH_nadp A la 42.1 2.1E+02 0.0046 24.1 8.6 94 100-196 2-122 (309)
456 PRK12480 D-lactate dehydrogena 42.0 1.4E+02 0.0029 25.6 7.3 85 98-193 146-232 (330)
457 PF03807 F420_oxidored: NADP o 42.0 16 0.00035 24.4 1.4 79 107-192 6-91 (96)
458 cd08285 NADP_ADH NADP(H)-depen 41.9 97 0.0021 26.3 6.5 94 95-197 164-268 (351)
459 PRK13581 D-3-phosphoglycerate 41.9 48 0.0011 30.4 4.8 86 98-192 140-227 (526)
460 PF00056 Ldh_1_N: lactate/mala 40.9 1.1E+02 0.0023 22.5 5.7 95 100-195 2-118 (141)
461 PLN02827 Alcohol dehydrogenase 40.8 1.9E+02 0.0041 25.0 8.2 93 95-196 191-296 (378)
462 COG1052 LdhA Lactate dehydroge 40.7 38 0.00083 28.9 3.7 85 98-192 146-233 (324)
463 KOG0821 Predicted ribosomal RN 40.5 42 0.00092 27.0 3.6 34 85-119 39-72 (326)
464 PRK08268 3-hydroxy-acyl-CoA de 39.9 1.9E+02 0.0042 26.4 8.3 148 98-254 7-191 (507)
465 TIGR01120 rpiB ribose 5-phosph 39.7 33 0.00072 25.4 2.8 41 104-145 62-102 (143)
466 PRK05708 2-dehydropantoate 2-r 39.5 2.3E+02 0.005 23.8 8.7 90 99-196 3-105 (305)
467 PRK08269 3-hydroxybutyryl-CoA 39.4 1E+02 0.0023 26.1 6.2 110 141-253 63-183 (314)
468 TIGR00689 rpiB_lacA_lacB sugar 39.3 33 0.00072 25.5 2.8 41 104-145 61-101 (144)
469 TIGR01772 MDH_euk_gproteo mala 39.1 1.2E+02 0.0026 25.7 6.5 96 100-195 1-116 (312)
470 PRK05808 3-hydroxybutyryl-CoA 38.6 2.2E+02 0.0048 23.4 8.6 148 99-254 4-187 (282)
471 PF13460 NAD_binding_10: NADH( 38.6 1.7E+02 0.0036 21.9 13.4 58 104-165 3-69 (183)
472 PRK08229 2-dehydropantoate 2-r 38.2 2.5E+02 0.0054 23.8 8.5 86 99-194 3-106 (341)
473 PLN02712 arogenate dehydrogena 38.2 1.4E+02 0.0029 28.5 7.2 82 98-189 52-137 (667)
474 cd01338 MDH_choloroplast_like 38.1 2E+02 0.0043 24.5 7.7 94 99-195 3-128 (322)
475 PF11253 DUF3052: Protein of u 38.1 1.6E+02 0.0034 21.4 7.4 66 158-251 47-112 (127)
476 PF02502 LacAB_rpiB: Ribose/Ga 37.7 28 0.00061 25.7 2.2 39 102-141 60-98 (140)
477 PRK00094 gpsA NAD(P)H-dependen 37.7 2.1E+02 0.0045 23.9 7.8 35 156-195 71-105 (325)
478 PRK06487 glycerate dehydrogena 37.5 58 0.0013 27.6 4.4 32 98-131 148-180 (317)
479 PRK08306 dipicolinate synthase 37.4 1.4E+02 0.003 25.1 6.6 85 97-192 151-238 (296)
480 PRK15438 erythronate-4-phospha 37.4 62 0.0013 28.3 4.6 32 97-130 115-147 (378)
481 PRK15182 Vi polysaccharide bio 36.9 2.1E+02 0.0046 25.5 7.9 95 99-199 7-123 (425)
482 cd00300 LDH_like L-lactate deh 36.7 1.6E+02 0.0035 24.7 6.9 91 103-195 3-115 (300)
483 TIGR00465 ilvC ketol-acid redu 36.6 1.3E+02 0.0029 25.5 6.3 88 98-194 3-93 (314)
484 PF03435 Saccharop_dh: Sacchar 36.4 1.2E+02 0.0026 26.3 6.3 61 101-162 1-73 (386)
485 PRK05571 ribose-5-phosphate is 36.4 40 0.00087 25.2 2.8 40 105-145 65-104 (148)
486 cd05291 HicDH_like L-2-hydroxy 36.1 1.6E+02 0.0034 24.8 6.8 94 100-195 2-117 (306)
487 COG2813 RsmC 16S RNA G1207 met 36.1 96 0.0021 26.1 5.3 37 157-196 38-74 (300)
488 cd08294 leukotriene_B4_DH_like 36.0 2.5E+02 0.0055 23.2 8.6 91 94-195 140-241 (329)
489 PRK06130 3-hydroxybutyryl-CoA 35.9 2E+02 0.0044 24.0 7.5 86 98-190 4-110 (311)
490 PRK06932 glycerate dehydrogena 35.8 55 0.0012 27.8 3.9 31 98-130 147-178 (314)
491 KOG1253 tRNA methyltransferase 35.5 12 0.00027 33.5 -0.0 101 96-196 108-217 (525)
492 cd08245 CAD Cinnamyl alcohol d 35.1 2.6E+02 0.0057 23.2 9.3 92 95-196 160-257 (330)
493 PLN03154 putative allyl alcoho 34.5 2.9E+02 0.0063 23.5 8.5 92 94-196 155-259 (348)
494 PRK06249 2-dehydropantoate 2-r 34.4 2.8E+02 0.0061 23.3 8.5 34 157-195 73-106 (313)
495 PRK04663 murD UDP-N-acetylmura 34.2 1.8E+02 0.0039 25.8 7.2 69 96-167 5-79 (438)
496 KOG2698 GTP cyclohydrolase I [ 34.1 81 0.0018 24.9 4.2 23 175-197 183-205 (247)
497 TIGR03438 probable methyltrans 33.9 43 0.00093 28.1 3.0 24 227-250 267-290 (301)
498 cd08293 PTGR2 Prostaglandin re 33.8 79 0.0017 26.6 4.7 87 99-195 156-254 (345)
499 PRK11790 D-3-phosphoglycerate 33.6 1.3E+02 0.0029 26.6 6.1 84 98-192 151-236 (409)
500 PTZ00075 Adenosylhomocysteinas 33.6 77 0.0017 28.7 4.6 96 86-194 242-340 (476)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=4.4e-45 Score=297.22 Aligned_cols=234 Identities=31% Similarity=0.506 Sum_probs=204.9
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
+|+||++|+.|+.++++.++..++.++.++..+++|.+|.+++++|. ++++.++|.++|+++.++|+..+.|+.+|...
T Consensus 5 ~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 83 (241)
T PF00891_consen 5 RYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEY 83 (241)
T ss_dssp EEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhh
Confidence 49999999988888766788888888788899999999999999998 89999999999999999999999999999998
Q ss_pred CchhH-HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccE
Q 025363 81 SVPFM-TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADA 159 (254)
Q Consensus 81 ~~~~~-~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~ 159 (254)
++... +.+...++ |++..+|||||||+|.++..+++++|+++ ++++|+|++++.+++.+||+++.|||++++|.+|+
T Consensus 84 ~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 84 SRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 88777 78889996 99999999999999999999999999999 99999999999888889999999999977888999
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCC--CEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAG--GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pg--G~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+++++||+|+|+++.+||++++++|+|| |+|+|.|.+.++....+........+|+.|+. ..+|++||.+||++|
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~~l 239 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWEAL 239 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHHHH
Confidence 99999999999999999999999999999 99999999999876554433222478999997 566999999999999
Q ss_pred HH
Q 025363 238 GF 239 (254)
Q Consensus 238 l~ 239 (254)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=258.37 Aligned_cols=249 Identities=40% Similarity=0.666 Sum_probs=223.3
Q ss_pred CcccChhchhcccCCCCCChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcC
Q 025363 1 MYSLTEIGKSLVTDVEGLSYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGV 80 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 80 (254)
.|++||++++++.+.+..|+.++++..+++..+..|..|.++++.|. .++..++|+.+++|.+.++.....++++|...
T Consensus 82 ~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l 160 (342)
T KOG3178|consen 82 VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFL 160 (342)
T ss_pred eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence 39999999888876666899999999888999999999999999998 78999999889999999999999999999998
Q ss_pred CchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-CCcEEEeCCCCCCCCCccE
Q 025363 81 SVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-PGVTHIGGDMFKSIPAADA 159 (254)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-~~i~~~~~d~~~~~p~~D~ 159 (254)
+......+++.+.+|+.....+|||||.|..+..++..+|+++ ++.+|+|.+++.++.. +.|+.+.+|+|++.|.+|+
T Consensus 161 ~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 161 STLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 8888888888887788889999999999999999999999999 9999999999999887 8899999999999999999
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC-CCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD-DSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
|++.++||||+|++|+++|++|++.|+|||++++.|.+.++ .............+|+.|+. ...+|++|+..|+..++
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~ 318 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALL 318 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcc
Confidence 99999999999999999999999999999999999998886 22222223445678888888 55669999999999999
Q ss_pred HhCCCCeeeEEEcc
Q 025363 239 FFAGFPHLRLYRVL 252 (254)
Q Consensus 239 ~~aGf~~~~~~~~~ 252 (254)
.++||.+..+...+
T Consensus 319 ~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 319 PEEGFPVCMVALTA 332 (342)
T ss_pred hhhcCceeEEEecc
Confidence 99999988876543
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.97 E-value=6.4e-30 Score=214.99 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=162.6
Q ss_pred CcccChhchhcccCCCCC---ChHHHHHHhcChhHHhhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHH
Q 025363 1 MYSLTEIGKSLVTDVEGL---SYAPYVLQHHQDALMSMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAM 77 (254)
Q Consensus 1 ~y~~t~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 77 (254)
+|+||+.|+.++.+.++. ++.+++.+. .......|.+|.++++++ +++...++ +-...++. ..|...|
T Consensus 59 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~-~~~~~~~ 129 (306)
T TIGR02716 59 KWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTRED-NLYFEEI 129 (306)
T ss_pred cEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHH-HHhHHHH
Confidence 599999997666654432 122343332 122335789999999854 33332211 11112222 2344444
Q ss_pred h-cCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCC
Q 025363 78 S-GVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGD 149 (254)
Q Consensus 78 ~-~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d 149 (254)
. .......+.+++..+ +++..+|||||||+|.++..+++++|+++ ++++|+|++++.++++ +||+++.+|
T Consensus 130 ~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d 207 (306)
T TIGR02716 130 HRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVD 207 (306)
T ss_pred HHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecC
Confidence 4 333445566778885 88889999999999999999999999999 9999999888776542 689999999
Q ss_pred CCCC-CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc-cchHhhhhccccCce
Q 025363 150 MFKS-IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYRAKGN 227 (254)
Q Consensus 150 ~~~~-~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (254)
+++. +|.+|+|++.+++|+|+++.+.++|++++++|+|||+|+|.|.+.++... +....... ...+.+.. .. ..
T Consensus 208 ~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~ 283 (306)
T TIGR02716 208 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF--SV-LG 283 (306)
T ss_pred ccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc--cc-cc
Confidence 9975 67679999999999999999999999999999999999999998765432 21111111 11111111 11 12
Q ss_pred ecCHHHHHHHHHhCCCCeeeEE
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
.++.++|.++|+++||+.+++.
T Consensus 284 ~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 284 FKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCCHHHHHHHHHHcCCCeeEec
Confidence 2457999999999999988764
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=3.5e-19 Score=141.96 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=119.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~ 157 (254)
+.++... ...++.+|||||||||..+..+++..+..+ ++++|. +.|++.++++ ..|+|+.+|+.+- +|+.
T Consensus 41 ~~~i~~~-~~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLL-GIKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhh-CCCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 3444444 244789999999999999999999999888 999999 9999998875 2399999999986 7774
Q ss_pred --cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh-hhh--ccccC--c----
Q 025363 158 --DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF-VMT--IYRAK--G---- 226 (254)
Q Consensus 158 --D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~--~---- 226 (254)
|+|.+++.|++++| ..++|++++|+|||||++++.|...+..+. .......+... .+- ..... .
T Consensus 119 sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~ 193 (238)
T COG2226 119 SFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYE 193 (238)
T ss_pred ccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHHHH
Confidence 99999999999975 469999999999999999999998875532 11111111111 110 00110 1
Q ss_pred -------eecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 227 -------NHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 227 -------~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+..+.+++.++++++||+.+.....
T Consensus 194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 194 YLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 1237899999999999998875543
No 5
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.81 E-value=5.5e-19 Score=145.23 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=118.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+++.+ ...++.+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.+++. +++.++.+|+.+. +|.
T Consensus 41 ~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 45667777 47889999999999999999998775 567 999999 8887776643 5799999999865 554
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|++..+++|++.++...+|++++++|||||+|++.|........ +.... .. ... ...-...+.+++.+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~---~~--~~~--~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEF---KA--YIK--KRKYTLIPIQEYGD 188 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHH---HH--HHH--hcCCCCCCHHHHHH
Confidence 39999999988888777889999999999999999999986654311 11000 00 000 00112358899999
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
+|+++||+.++..++.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=4.5e-18 Score=139.66 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=112.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCC-c-cEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA-A-DAI 160 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~-~-D~v 160 (254)
..++.+|||||||+|.++..+++++ |+.+ ++++|+ ++|++.++++ ++++++.+|+.+. +++ . |+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 5678899999999999999999875 5668 999999 9999877532 4799999998774 554 3 999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH--hhhhcccc-----------Cce
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI--FVMTIYRA-----------KGN 227 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------~~~ 227 (254)
++..++|++++ ..++|++++++|||||++++.|...++..-...... ..+.. ........ -..
T Consensus 150 ~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 150 TMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE--WMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHH--HHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999864 468999999999999999999987654311111000 00000 00000000 012
Q ss_pred ecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
..+.+++.++++++||+.++...+.|
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~ 251 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISG 251 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCC
Confidence 35899999999999999998877654
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=1e-18 Score=142.05 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=111.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~D~v~~~~ 164 (254)
.++.+|||||||+|..+..+++++ |+.+ ++++|+ +.|++.+++. .+++++.+|+.+. ++..|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 467799999999999999999974 6888 999999 9998887643 4789999999876 55569999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc----------------cccCcee
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----------------YRAKGNH 228 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 228 (254)
++|++++++...++++++++|+|||.+++.|....+....... ...+..... ....-..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-----LIDLHHQFKRANGYSELEISQKRTALENVMRT 205 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCC
Confidence 9999998888999999999999999999999876544221110 001000000 0001123
Q ss_pred cCHHHHHHHHHhCCCCeee
Q 025363 229 RTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 229 ~t~~e~~~ll~~aGf~~~~ 247 (254)
.|.+++.++++++||+.++
T Consensus 206 ~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 206 DSIETHKARLKNVGFSHVE 224 (239)
T ss_pred CCHHHHHHHHHHcCCchHH
Confidence 5899999999999998655
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=1.1e-19 Score=146.15 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=83.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCc-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~- 157 (254)
+++.. ...++.+|||+|||||..+..++++. |+.+ ++++|+ ++|++.++++ .+|+++.+|+.+. +++.
T Consensus 39 ~~~~~-~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s 116 (233)
T PF01209_consen 39 LIKLL-GLRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS 116 (233)
T ss_dssp HHHHH-T--S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred HHhcc-CCCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence 44444 35668899999999999999999885 5678 999999 9999988753 5899999999875 6654
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc-cch-HhhhhccccCc--------
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL-EGD-IFVMTIYRAKG-------- 226 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-------- 226 (254)
|+|++.+.+|+++|. .+.|++++|+|||||+++|+|...+..+ ....... .+. +....-....+
T Consensus 117 fD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL 191 (233)
T PF01209_consen 117 FDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYL 191 (233)
T ss_dssp EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-----------------------
T ss_pred eeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccc
Confidence 999999999999764 5799999999999999999999887542 1111000 000 00000000001
Q ss_pred -----eecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 227 -----NHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 227 -----~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...+.+++.++++++||+.++..++.
T Consensus 192 ~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 192 PESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 11368899999999999988876654
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=2.1e-18 Score=140.72 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=109.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHH--cCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~--~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~D~v~~~~ 164 (254)
.++.+|||||||+|..+..+++. .|+.+ ++++|. +.|++.++++ .+++++.+|+.+. .+..|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 46789999999999999999884 57889 999999 9999888653 4799999998765 44569999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-ChhhhhhcccchHhhhh------c-c----ccC-ceecCH
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMT------I-Y----RAK-GNHRTE 231 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~------~-~----~~~-~~~~t~ 231 (254)
++|++++++...++++++++|||||.|++.|....+... .+.... ...+..... + . ..+ -...|.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFN--MHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 999998888889999999999999999999976654422 111000 000100000 0 0 000 112488
Q ss_pred HHHHHHHHhCCCCeee
Q 025363 232 QEFKQLGFFAGFPHLR 247 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~ 247 (254)
++..++|+++||+.++
T Consensus 212 ~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 212 ETHKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHHcCchhHH
Confidence 9999999999998654
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=1.9e-17 Score=135.79 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=111.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC--ccEEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIF 161 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~--~D~v~ 161 (254)
...+++.++ ..++.+|||||||+|.++..+++++|+.+ ++++|+ +.|++.+++ .+++++.+|+.+..+. .|+|+
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 456777774 67789999999999999999999999888 999999 999988876 4799999998765333 39999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc--ccchHhhhhc-cccCceecCHHHHHHHH
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTI-YRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~t~~e~~~ll 238 (254)
+..++|++++. .+++++++++|||||++++.................. ..+....... ........+.+++.++|
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHH
Confidence 99999998654 6899999999999999998643211110000000000 0000000000 00112335899999999
Q ss_pred HhCCCCeeeE
Q 025363 239 FFAGFPHLRL 248 (254)
Q Consensus 239 ~~aGf~~~~~ 248 (254)
+++||++...
T Consensus 173 ~~aGf~v~~~ 182 (255)
T PRK14103 173 TDAGCKVDAW 182 (255)
T ss_pred HhCCCeEEEE
Confidence 9999985543
No 11
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.76 E-value=2e-17 Score=139.15 Aligned_cols=148 Identities=26% Similarity=0.312 Sum_probs=112.9
Q ss_pred HHhhcCCC-CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCC--ccE
Q 025363 88 VLEGYNGF-KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPA--ADA 159 (254)
Q Consensus 88 i~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~--~D~ 159 (254)
+++... + .++.+|||||||+|..+..+++..+..+ ++++|. +++++.+++. .+++++.+|+.+. ++. .|+
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence 444442 3 4568999999999999999999888778 999999 8888887654 5789999999775 444 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
|++..++|++++. ..+|++++++|||||++++.+...+.. +..+. ..+..+ ...+.+|+.++++
T Consensus 182 VIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r~--~~~~~~--------~~~t~eEl~~lL~ 245 (340)
T PLN02490 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSRF--FADVWM--------LFPKEEEYIEWFT 245 (340)
T ss_pred EEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHHH--hhhhhc--------cCCCHHHHHHHHH
Confidence 9999999999765 478999999999999999887654321 11110 111111 1257899999999
Q ss_pred hCCCCeeeEEEccC
Q 025363 240 FAGFPHLRLYRVLD 253 (254)
Q Consensus 240 ~aGf~~~~~~~~~~ 253 (254)
++||+.+++.++.+
T Consensus 246 ~aGF~~V~i~~i~~ 259 (340)
T PLN02490 246 KAGFKDVKLKRIGP 259 (340)
T ss_pred HCCCeEEEEEEcCh
Confidence 99999999887654
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=4.1e-17 Score=138.86 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=113.0
Q ss_pred HHHHHhhcCCC-----CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCC
Q 025363 85 MTSVLEGYNGF-----KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMF 151 (254)
Q Consensus 85 ~~~i~~~~~~~-----~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~ 151 (254)
.+.+++... . .++.+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++. ++++|+.+|+.
T Consensus 102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 444555552 3 567899999999999999999987 667 999999 8887765532 57999999998
Q ss_pred CC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCc
Q 025363 152 KS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKG 226 (254)
Q Consensus 152 ~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (254)
+. ++.. |+|++..++||+++. .+++++++++|||||+|++.+.......... ........+.-.... ....
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p 254 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLP 254 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCC
Confidence 75 5543 999999999999754 6899999999999999999886543221100 000000011110000 0001
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...+.++|.++++++||..+++.+..
T Consensus 255 ~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 255 AWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 22478999999999999999887653
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.75 E-value=4.7e-17 Score=127.87 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=114.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC------CCeEEEeec-hHHHhhCCCC---------CCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVAEAPSI---------PGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~------~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~ 148 (254)
-+-.+..+. ..++.++||++||||..+..+++..+. .+ +++.|+ |+|++.++++ .++.++++
T Consensus 89 Kd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 89 KDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 344455553 556799999999999999999999776 56 999999 9999987653 45999999
Q ss_pred CCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcc--cchHhh-hhcc
Q 025363 149 DMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALL--EGDIFV-MTIY 222 (254)
Q Consensus 149 d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 222 (254)
|+.+- +|+. |.|.+...+.+|++. .+.|++++|+|||||++.+.|+.--+. ++..+... .++... +..+
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~fy~~ysf~VlpvlG~~ 241 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWFYDQYSFDVLPVLGEI 241 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHHHHhhhhhhhchhhHh
Confidence 99886 7764 999999999999765 689999999999999999999865442 11111111 111110 0000
Q ss_pred ccC------------ceecCHHHHHHHHHhCCCCeee
Q 025363 223 RAK------------GNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 223 ~~~------------~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
..+ -+..+.+++..+.++|||+.+.
T Consensus 242 iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 242 IAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 001 0123789999999999999875
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=5.7e-17 Score=131.13 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=113.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
+.+++.++ ..++.+|||+|||+|.++..+++.+ |..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 44555563 6778899999999999999999986 5678 999999 8888766542 5789999999775 444
Q ss_pred -c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccch----H------------hh
Q 025363 157 -A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGD----I------------FV 218 (254)
Q Consensus 157 -~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~----~------------~~ 218 (254)
. |+|++..++|++++. .++|+++.++|+|||++++.+...+... .........+. . ..
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 3 999999999988654 5899999999999999999887544321 11000000000 0 00
Q ss_pred hhccccCceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 219 MTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 219 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
+. .......+.+++.++++++||+.+++..+.
T Consensus 189 ~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 189 LQ--ESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HH--HHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 00 000123478999999999999999988776
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=3.1e-16 Score=139.71 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=115.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~- 156 (254)
.+.+++.+. ..++.+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.++++ .+++|+.+|+.+. +|.
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 344666664 6778899999999999999998876 668 999999 8888776543 4799999999876 554
Q ss_pred -ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 -ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 -~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
.|+|++..+++|+++ ...++++++++|||||+|++.+............. .. .. ..+....+.+++.
T Consensus 332 ~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~--~~--~~g~~~~~~~~~~ 399 (475)
T PLN02336 332 SFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA------EY--IK--QRGYDLHDVQAYG 399 (475)
T ss_pred CEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH------HH--HH--hcCCCCCCHHHHH
Confidence 399999999999865 46899999999999999999987654322111110 01 00 1223456899999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
++++++||+++.+...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999877653
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=1e-16 Score=114.87 Aligned_cols=98 Identities=21% Similarity=0.296 Sum_probs=82.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCC-CCC-CC-CccEEEecc-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDM-FKS-IP-AADAIFMKW- 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~-~~~-~p-~~D~v~~~~- 164 (254)
|+.+|||||||+|.++..+++.+|+.+ ++++|. |++++.++++ ++|+++.+|+ ... .+ ..|+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 467999999999999999999999999 999999 8888877643 7999999999 333 33 359999999
Q ss_pred ccccCCH-HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTD-DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.++++.. ++..++++++++.|+|||+|+|.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6664433 678899999999999999999864
No 17
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=3.1e-16 Score=126.28 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=105.2
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC-ccEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA-ADAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~ 168 (254)
.+|||||||+|..+..+++.+|+.+ ++++|+ +++++.++++ ++++++..|+.+. .++ .|+|++..++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 3799999999999999999998888 999999 7777766542 5789999999765 444 499999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
+++ ...+|++++++|||||++++.+...+.... .. .. .......+..+|.++++++||++++.
T Consensus 80 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~------~~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IKD--KMDLFSNISRHLKDGGHLVLADFIANLLSA--IE------HE-------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCC--HHHHHHHHHHHcCCCCEEEEEEcccccCcc--cc------cc-------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 865 468999999999999999999875432100 00 00 00111357899999999999999988
Q ss_pred EEc
Q 025363 249 YRV 251 (254)
Q Consensus 249 ~~~ 251 (254)
..+
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 765
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=9.4e-16 Score=120.86 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=104.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
.+.+++.++ ..+..+|||+|||+|..+..++++ +.+ ++++|+ +.+++.+++. .++++...|+.+. ++.
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 445666664 556789999999999999999987 456 999999 8888766542 4588888998765 444
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
. |+|++..++|++++++...++++++++|+|||++++.+....+....+ . .. ...++.+|+.
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~--~~---------~~~~~~~el~ 157 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------V--GF---------PFAFKEGELR 157 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------C--CC---------CCccCHHHHH
Confidence 4 999999999998888889999999999999999877665443321100 0 00 0124778888
Q ss_pred HHHHhCCCCeeeE
Q 025363 236 QLGFFAGFPHLRL 248 (254)
Q Consensus 236 ~ll~~aGf~~~~~ 248 (254)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8886 8887665
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=6.6e-16 Score=130.25 Aligned_cols=150 Identities=18% Similarity=0.107 Sum_probs=105.4
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-------CCCCcEEEeCCCCCC-CCCc-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-------~~~~i~~~~~d~~~~-~p~~- 157 (254)
+...++ .-.+.+|||||||+|.++..+++..+. . ++++|. +.++...+ ...+|.++.+|+.+. .+..
T Consensus 114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444553 335689999999999999999998654 6 899998 65554321 125799999998664 3333
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
|+|++..++||..+ ...+|++++++|+|||.+++.+...+...... +..... . +.. .--.+|.+++.
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~---~--~~~----~~~lps~~~l~ 259 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA---K--MRN----VYFIPSVPALK 259 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh---c--Ccc----ceeCCCHHHHH
Confidence 99999999999854 46899999999999999998766555432210 000000 0 000 00124889999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
++++++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999988754
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.67 E-value=2.2e-16 Score=132.50 Aligned_cols=144 Identities=11% Similarity=-0.030 Sum_probs=103.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC--ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA--ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~--~D~v~~~~v 165 (254)
++.+|||||||+|.++..+++. +.+ ++++|. +++++.++.. .+|+++.+|+.+. .+. .|+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4569999999999999988864 567 999999 8888877642 3789999998653 333 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHHHHHHHHh
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQEFKQLGFF 240 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~ 240 (254)
|||+++. ..+|++++++|||||.+++.+...... ...........+... ... .+.++.+|+.+++++
T Consensus 208 LeHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~---lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 208 IEHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRW---LPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HHhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhc---CCCCCcCccCCCCHHHHHHHHHH
Confidence 9999765 589999999999999999987543210 000000000000000 111 234689999999999
Q ss_pred CCCCeeeEEEc
Q 025363 241 AGFPHLRLYRV 251 (254)
Q Consensus 241 aGf~~~~~~~~ 251 (254)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999888655
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.67 E-value=7.3e-16 Score=117.41 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=96.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC--ccEEEeccccccCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 170 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~--~D~v~~~~vlh~~~ 170 (254)
..+..+|||||||+|.++..+.+... + ++++|+ +.+++. ..+.+...+.... .+. .|+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 46788999999999999999966633 7 999999 888877 2233332222222 222 39999999999997
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+ ...+|+++++.|||||++++.++..... .......+ ..... .......++.++|.++++++||++++
T Consensus 93 d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 D--PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 6799999999999999999999875321 00000000 00000 01224567999999999999999875
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.67 E-value=1.4e-15 Score=126.05 Aligned_cols=146 Identities=18% Similarity=0.276 Sum_probs=109.0
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC-c-cEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA-A-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~-~-D~v~~ 162 (254)
...++.+|||||||+|..+..+++.. +..+ ++++|+ +.+++.+++. +++++..+|+.+. +++ . |+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 35678999999999999888877764 4567 999999 8898887653 5889999998764 444 3 99999
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCC
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAG 242 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 242 (254)
..++|++++. .+++++++++|||||+|++.+........ .. ...+..+.. ...+...+..++.++++++|
T Consensus 153 ~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~-~~-----~~~~~~~~~--~~~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 153 NCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELP-EE-----IRNDAELYA--GCVAGALQEEEYLAMLAEAG 222 (272)
T ss_pred cCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCC-HH-----HHHhHHHHh--ccccCCCCHHHHHHHHHHCC
Confidence 9999987654 57999999999999999999887543211 11 011111121 11234568899999999999
Q ss_pred CCeeeEEE
Q 025363 243 FPHLRLYR 250 (254)
Q Consensus 243 f~~~~~~~ 250 (254)
|..+++..
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 99887644
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=7.9e-16 Score=128.57 Aligned_cols=151 Identities=16% Similarity=0.060 Sum_probs=105.3
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-------CCCCcEEEeCCCCCCC-CC-
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-------SIPGVTHIGGDMFKSI-PA- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-------~~~~i~~~~~d~~~~~-p~- 156 (254)
.++..+. ..++.+|||||||+|.++..++...+. . ++++|. +.++..++ ...++.+..+++.+.. ..
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3455543 455789999999999999999887653 6 899998 66654321 1257888888875542 22
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCceecCHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
.|+|++..++||+.+ ...+|++++++|||||.|++.+.......... +..+. ..|.. . -...+.+++
T Consensus 189 FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry-----~k~~n--v--~flpS~~~L 257 (314)
T TIGR00452 189 FDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRY-----AKMKN--V--YFIPSVSAL 257 (314)
T ss_pred cCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHH-----Hhccc--c--ccCCCHHHH
Confidence 399999999999854 46899999999999999999877654332110 00000 00100 0 012488999
Q ss_pred HHHHHhCCCCeeeEEEc
Q 025363 235 KQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 235 ~~ll~~aGf~~~~~~~~ 251 (254)
.++++++||+.+++...
T Consensus 258 ~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 258 KNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHHCCCeEEEEEec
Confidence 99999999999987754
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.66 E-value=7.9e-16 Score=126.51 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=110.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
..+.+++.++ .+++.+|||||||-|.++..+++++ +++ ++++.+ ++..+.+++. +++++...|+.+..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 3566788884 9999999999999999999999998 778 999998 6666554321 679999999865434
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
..|.|++-.++.|+..+....+++++.+.|||||++++.......... ........++..-. ..++|.-.+.+++.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~---~~~~~~~~~~i~ky-iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY---HAERRSSSDFIRKY-IFPGGYLPSLSEIL 202 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH---HHCTTCCCHHHHHH-TSTTS---BHHHHH
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccc---hhhcCCCceEEEEe-eCCCCCCCCHHHHH
Confidence 459999999999998888899999999999999999998887764311 11000011222111 24677778899999
Q ss_pred HHHHhCCCCeeeEEEc
Q 025363 236 QLGFFAGFPHLRLYRV 251 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~~ 251 (254)
..++++||++.++..+
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999999888765
No 25
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=3e-15 Score=121.47 Aligned_cols=160 Identities=18% Similarity=0.205 Sum_probs=113.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p 155 (254)
..++..+. ..++.+|||+|||+|.++..+++.+| ..+ ++++|. +.+++.+++. .++.+..+|+.+. .+
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34555553 45678999999999999999999987 678 999999 7777766543 4689999999875 33
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh---ccccC-----
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT---IYRAK----- 225 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 225 (254)
. .|+|++.+++|++++ ...+|+++.++|+|||++++.+...+.... ... ........++. ....+
T Consensus 119 ~~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKK-AYDFYLFKVLPLIGKLISKNAEAY 193 (239)
T ss_pred CCCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHH-HHHHHHHhhhHHHHHHHcCCcHHH
Confidence 2 399999999998864 568999999999999999999887653311 000 00000000000 00000
Q ss_pred -------ceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 226 -------GNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 226 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
...++.++|.++++++||+.+++.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 194 SYLAESIRAFPDQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeee
Confidence 123478899999999999999988754
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=5.8e-15 Score=121.38 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=91.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCC-C-ccE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP-A-ADA 159 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p-~-~D~ 159 (254)
....++..++ ..++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++. +++.++.+|+.+..+ . .|+
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 3566777774 77789999999999999999999999888 999999 8899888765 679999999876533 2 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++..++|++++. ..++++++++|||||++++.
T Consensus 97 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 9999999988653 68999999999999999885
No 27
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=2.6e-15 Score=120.53 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=113.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
..+++... ..++.+|||+|||+|..+..+++.+|. .+ ++++|+ +.+++.+++. .++++..+|+.+. .+.
T Consensus 29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34455553 457889999999999999999999986 67 999998 7777666543 4789999999875 333
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc---c---ccC-----
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI---Y---RAK----- 225 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~----- 225 (254)
.|+|++..++|+.++ ...+++++++.|+|||++++.+...+.... ..... ..+...++.. . ..+
T Consensus 107 ~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFY-KFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHH-HHHHHHhhhhhhhhhcCCchhhHHH
Confidence 399999999998754 578999999999999999998876543211 00000 0000000000 0 000
Q ss_pred ----ceecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 226 ----GNHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 226 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
....+.++|..+|+++||+.+++.++.+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeec
Confidence 1124788999999999999999888765
No 28
>PRK06922 hypothetical protein; Provisional
Probab=99.65 E-value=8.4e-16 Score=137.12 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=109.7
Q ss_pred CCcccccccCchHHHHHHHHHhcCCch--hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH
Q 025363 57 EPAYSYYGKIPEMNGLMRKAMSGVSVP--FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV 133 (254)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~ 133 (254)
..+|+++...++..++|...|...... ..+.....++ +.++.+|||||||+|..+..+++.+|+.+ ++++|+ +.|
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence 456888888888778777655442221 1222233443 66788999999999999999999999999 999999 888
Q ss_pred HhhCCCC-----CCcEEEeCCCCCC---CCC--ccEEEeccccccC-----------CHHHHHHHHHHHHHhCCCCCEEE
Q 025363 134 VAEAPSI-----PGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW-----------TDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 134 ~~~~~~~-----~~i~~~~~d~~~~---~p~--~D~v~~~~vlh~~-----------~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
++.+++. .+++++.+|+.+. ++. .|+|+++.++|+| ++++..++|++++++|||||+++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence 8877643 4678888998653 333 3999999999976 34678899999999999999999
Q ss_pred EEccccCCC
Q 025363 193 ACEPVLPDD 201 (254)
Q Consensus 193 i~d~~~~~~ 201 (254)
+.|...++.
T Consensus 535 I~D~v~~E~ 543 (677)
T PRK06922 535 IRDGIMTED 543 (677)
T ss_pred EEeCccCCc
Confidence 999876654
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=1.7e-15 Score=122.97 Aligned_cols=157 Identities=19% Similarity=0.147 Sum_probs=127.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~ 156 (254)
.+.+++.+ +++++.+|||||||-|.+++..++.+ +++ ++++++ ++..+.+++. .+|++...|..+..+.
T Consensus 61 ~~~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 56688888 59999999999999999999999999 888 999999 8777777653 4799988888655444
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|-|+....++|+..+.-...++++++.|+|||++++.....++.+.. ...++..-. ..++|.-++..++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~y-iFPgG~lPs~~~i~~ 209 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKY-IFPGGELPSISEILE 209 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHh-CCCCCcCCCHHHHHH
Confidence 699999999999999889999999999999999999999887764321 111111111 357788889999999
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
..+++||.+.++..+.
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999998876654
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=2.9e-15 Score=121.47 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC--
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+.+ ...++.+|||+|||+|.++..+++.+ |..+ ++++|+ +.+++.+++. .++++..+|+.+. ++.
T Consensus 10 ~~~~~~-~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELL-AVQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 355556 37788999999999999999999988 6778 999999 7777666442 5789999998764 443
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh-hhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
.|+|++.++++++++ ...++++++++|+|||++++.+.........+ ........... .. .......+..+|.
T Consensus 88 ~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF--WS--DHFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH--HH--hcCCCCcHHHHHH
Confidence 399999999999865 46899999999999999999886432211000 00000001111 00 1112234567899
Q ss_pred HHHHhCCCCeeeEEE
Q 025363 236 QLGFFAGFPHLRLYR 250 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~ 250 (254)
++++++||+.+++..
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999876644
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=124.82 Aligned_cols=156 Identities=17% Similarity=0.076 Sum_probs=106.6
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p 155 (254)
+.+++.++ .+..+|||+|||+|.++..+++. +.+ ++++|+ +++++.+++. ++++++.+|+.+. .+
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 34555553 45679999999999999999987 456 999999 8998887653 4789999988653 22
Q ss_pred -C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh---hhh---ccccCce
Q 025363 156 -A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF---VMT---IYRAKGN 227 (254)
Q Consensus 156 -~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~ 227 (254)
+ .|+|++..++|++++. ..+|++++++|||||+|++........ .........+... +.. .......
T Consensus 110 ~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCC
Confidence 3 3999999999998654 589999999999999999875432210 0000000000000 000 0000112
Q ss_pred ecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 228 HRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 228 ~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
..+.+++.++++++||++++...+
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeeeeeE
Confidence 357899999999999999876654
No 32
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.62 E-value=6.1e-16 Score=122.34 Aligned_cols=144 Identities=15% Similarity=0.031 Sum_probs=107.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------C----CcEEEeCCCCCCCCCccEEEecc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------P----GVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~----~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
+++|||||||+|-++..|++.. .+ ++++|. +.+++.+++. . |+++...|.....+..|+|++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 4889999999999999999995 56 999999 8898888764 2 57888888876666679999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc-----eecCHHHHHHHHH
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-----NHRTEQEFKQLGF 239 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~~~ll~ 239 (254)
+++|. ++...+++.+.+.|||||+|+|.+....-.. +. ....++-..+. ..+.| +..++++...++.
T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS---~~--~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS---FA--GTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH---hh--ccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHH
Confidence 99998 5567999999999999999999876543210 00 01112211111 12222 3458999999999
Q ss_pred hCCCCeeeEEEcc
Q 025363 240 FAGFPHLRLYRVL 252 (254)
Q Consensus 240 ~aGf~~~~~~~~~ 252 (254)
.+|+++..+....
T Consensus 239 ~~~~~v~~v~G~~ 251 (282)
T KOG1270|consen 239 ANGAQVNDVVGEV 251 (282)
T ss_pred hcCcchhhhhccc
Confidence 9999987766543
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.62 E-value=2.1e-14 Score=112.97 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=101.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~- 156 (254)
...+++.++ ..+..+|||+|||+|..+..++++ +.+ ++++|. +.+++.+++. -++.+...|+... ++.
T Consensus 19 ~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence 445566664 445679999999999999999986 457 999999 8888766432 2366777777543 343
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|++..++|++++++...++++++++|||||++++.+....+....++ +.....+.+|+.+
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~-----------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM-----------------PFSFTFKEDELRQ 157 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC-----------------CcCccCCHHHHHH
Confidence 49999999999998888889999999999999998777654322211000 0011257788888
Q ss_pred HHHhCCCCeeeEE
Q 025363 237 LGFFAGFPHLRLY 249 (254)
Q Consensus 237 ll~~aGf~~~~~~ 249 (254)
+++ +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 885 47766554
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.61 E-value=5.9e-16 Score=117.12 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=84.5
Q ss_pred CCCCeEEEecCcccHHHHHHH-HHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC----C-ccEEEe
Q 025363 96 KGVKRLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----A-ADAIFM 162 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~-~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p----~-~D~v~~ 162 (254)
++..+|||+|||+|.++..++ +.+|+.+ ++++|+ +++++.++.. ++++|..+|+.+ ++ . .|+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 357899999999999999999 4578888 999999 9999888762 689999999998 43 3 499999
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
..++|++++. ..+++++++.|+|||++++.+..
T Consensus 80 ~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 9999998655 58999999999999999999887
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=2.4e-14 Score=114.91 Aligned_cols=158 Identities=11% Similarity=-0.030 Sum_probs=107.1
Q ss_pred hHHHHHhhcCC-CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC
Q 025363 84 FMTSVLEGYNG-FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI 154 (254)
Q Consensus 84 ~~~~i~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~ 154 (254)
+.+.+++.++. ..+..+|||||||+|.++..+++. +.+ ++++|+ +++++.+++. .++.+..+|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 34445544421 345789999999999999999886 446 999999 8888877653 37899999986654
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc-cccCceecCHHH
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGNHRTEQE 233 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e 233 (254)
...|+|++..++++++.++...+++++.+++++++.+.+... . ... .....+....... ....-..++.++
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK----T---AWL-AFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHH-HHHHHHHhhCcCcccccceEEecHHH
Confidence 334999999999999888888999999999987655544211 1 110 0000011000000 001123458999
Q ss_pred HHHHHHhCCCCeeeEEEcc
Q 025363 234 FKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 234 ~~~ll~~aGf~~~~~~~~~ 252 (254)
+.++++++||+++......
T Consensus 190 ~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 190 LERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHHHcCceeeeeeccc
Confidence 9999999999999876543
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=2.3e-15 Score=104.22 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=75.2
Q ss_pred EEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHH
Q 025363 102 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~ 174 (254)
||+|||+|..+..++++ +..+ ++++|. +++++.+++. .++++..+|+.+. +++. |+|++.+++|++ ++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHH
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCH
Confidence 79999999999999999 7777 999999 8888777654 5677999998886 5653 999999999999 566
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 025363 175 KLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i 193 (254)
.+++++++|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 8999999999999999986
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=6.3e-15 Score=113.25 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=100.6
Q ss_pred HHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCC
Q 025363 72 LMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGD 149 (254)
Q Consensus 72 ~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d 149 (254)
.|.+.-...+++ +..++...+ .....+|+|+|||+|..+..|++++|+.. ++++|. ++|++.++.. ++++|..+|
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceeccc
Confidence 354544454554 456777774 78889999999999999999999999999 999999 9999998766 889999999
Q ss_pred CCCCCCC--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 150 MFKSIPA--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 150 ~~~~~p~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+-+..|+ .|+++.+.+||-.+|. .++|.++...|.|||.|.+.=
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC
Confidence 9887665 3999999999977654 689999999999999999854
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.59 E-value=3e-14 Score=111.47 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=96.2
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccE
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADA 159 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~ 159 (254)
++..++ ..+..+|||||||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|.....+. .|+
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 345553 66788999999999999999999999888 999999 8888777542 5689999988654554 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
|++....+++ ..+++.+++.|+|||++++..... -+..++.++++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLE 145 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHH
Confidence 9987765432 468999999999999998844211 12346677889
Q ss_pred hCCCCeeeEEE
Q 025363 240 FAGFPHLRLYR 250 (254)
Q Consensus 240 ~aGf~~~~~~~ 250 (254)
++||+.+++..
T Consensus 146 ~~g~~~~~~~~ 156 (187)
T PRK08287 146 KCGVSELDCVQ 156 (187)
T ss_pred HCCCCcceEEE
Confidence 99988766543
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=3.5e-14 Score=116.72 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=83.7
Q ss_pred CCCCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC------------------------
Q 025363 95 FKGVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI------------------------ 140 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~------------------------ 140 (254)
..+..+|+|+|||+|. +++.+++..+ +.+ +++.|+ +.+++.+++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 3456899999999997 4666666654 467 999999 9999887763
Q ss_pred ---------CCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 141 ---------PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+|+|..+|+.+. .+. . |+|++++++|++++++..+++++++++|+|||+|++...
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 2689999999987 333 3 999999999999988889999999999999999998653
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=3.3e-14 Score=126.76 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=110.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC---CC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~---~p 155 (254)
....+++.++ ..+..+|||||||+|.++..+++.+. + ++++|. +.+++.++.. +++.++.+|+.+. +|
T Consensus 25 ~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 25 ERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 3456666664 55677999999999999999998853 5 899999 8888765432 5789999999642 34
Q ss_pred C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHH
Q 025363 156 A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQE 233 (254)
Q Consensus 156 ~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 233 (254)
. .|+|++..++|++++++..+++++++++|||||++++.|......... . .. ......++..+
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-~-----~~---------~~~~~~~~~~~ 165 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-K-----RK---------NNPTHYREPRF 165 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-c-----cc---------CCCCeecChHH
Confidence 3 399999999999999888999999999999999999998765433110 0 00 01123357889
Q ss_pred HHHHHHhCCCCeee
Q 025363 234 FKQLGFFAGFPHLR 247 (254)
Q Consensus 234 ~~~ll~~aGf~~~~ 247 (254)
|.+++.++||...+
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999998764
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.58 E-value=7.4e-16 Score=107.96 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=60.6
Q ss_pred EEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C---CcEEEeCCCCCCCC--CccEEEeccccccC
Q 025363 102 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P---GVTHIGGDMFKSIP--AADAIFMKWVLTTW 169 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~---~i~~~~~d~~~~~p--~~D~v~~~~vlh~~ 169 (254)
||||||+|.++..+++++|..+ ++++|+ +.+++.++++ . ++++...|.++..+ ..|+|++.+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999999999999 999999 9999888775 2 34444455544433 24999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCEE
Q 025363 170 TDDECKLIMENCYKALPAGGKL 191 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l 191 (254)
++...+++++++.|+|||+|
T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred --hhHHHHHHHHHHHcCCCCCC
Confidence 55679999999999999986
No 42
>PRK04266 fibrillarin; Provisional
Probab=99.57 E-value=8.3e-14 Score=111.55 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=93.8
Q ss_pred hcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHh----hCCCCCCcEEEeCCCCCC-----CCC-ccE
Q 025363 91 GYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADA 159 (254)
Q Consensus 91 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~----~~~~~~~i~~~~~d~~~~-----~p~-~D~ 159 (254)
.+ ..+++.+|||+|||+|.++..+++..+..+ ++++|. ++|++ .+++..+|.++.+|..++ +++ .|+
T Consensus 67 ~l-~i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NF-PIKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hC-CCCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 35 377889999999999999999999987667 999999 76666 344446799999998653 233 388
Q ss_pred EEeccccccCCHH-HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 160 IFMKWVLTTWTDD-ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 160 v~~~~vlh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
|+. +.++. +...+|+++++.|||||+++|.=...+ .|.. .... +..++..+++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--------------~d~~------~~~~-~~~~~~~~~l 198 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS--------------IDVT------KDPK-EIFKEEIRKL 198 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccc--------------ccCc------CCHH-HHHHHHHHHH
Confidence 874 33322 345678999999999999999411100 0000 0001 1123446999
Q ss_pred HhCCCCeeeEEEccC
Q 025363 239 FFAGFPHLRLYRVLD 253 (254)
Q Consensus 239 ~~aGf~~~~~~~~~~ 253 (254)
+++||+.++...+..
T Consensus 199 ~~aGF~~i~~~~l~p 213 (226)
T PRK04266 199 EEGGFEILEVVDLEP 213 (226)
T ss_pred HHcCCeEEEEEcCCC
Confidence 999999999887643
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=1.2e-13 Score=113.10 Aligned_cols=148 Identities=14% Similarity=0.115 Sum_probs=103.8
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-c-c
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-A-D 158 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~-D 158 (254)
..+.+++.++ ..+..+|||+|||+|.++..+.+. +.+ ++++|+ +.+++.+++. ..+.++.+|+.+. +++ . |
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 4455666664 455789999999999999888765 456 999999 9999888765 4467889998764 444 3 9
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
+|++..++|..++ ...+|++++++|+|||++++........ +.........+. . .......+.+++.+++
T Consensus 106 ~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~---~--~~~~~~~~~~~l~~~l 175 (251)
T PRK10258 106 LAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDE---R--PHANRFLPPDAIEQAL 175 (251)
T ss_pred EEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhcc---C--CccccCCCHHHHHHHH
Confidence 9999999986543 5689999999999999999977643321 100000000000 0 0112335889999999
Q ss_pred HhCCCCe
Q 025363 239 FFAGFPH 245 (254)
Q Consensus 239 ~~aGf~~ 245 (254)
+..|++.
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9888864
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.56 E-value=7.5e-14 Score=120.39 Aligned_cols=155 Identities=12% Similarity=-0.010 Sum_probs=112.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCCCCCccEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIPAADAI 160 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~~p~~D~v 160 (254)
.+.+++.++ ..++.+|||||||+|.++..+++.+ +.+ ++++|+ +++++.+++. ..+++...|+.+.....|+|
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE
Confidence 344666664 7788999999999999999998876 567 999999 8888877653 34788888875432224999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++..+++++++.....++++++++|||||++++.+...+...... . .+++- . ..++|...+.+++...++
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-~----~~i~~--y--ifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-D----PWINK--Y--IFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-C----CCcee--e--ecCCCcCCCHHHHHHHHH-
Confidence 999999998887788999999999999999999877554321110 0 01111 1 134555668888888766
Q ss_pred CCCCeeeEEEcc
Q 025363 241 AGFPHLRLYRVL 252 (254)
Q Consensus 241 aGf~~~~~~~~~ 252 (254)
.||.+.++..+.
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589888876653
No 45
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=6.9e-14 Score=113.19 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=99.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC--CCC-ccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS--IPA-ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~--~p~-~D~v~~~ 163 (254)
..+..+|||||||+|.++..+++. .++.+ ++++|+ +++++.+++. .++++...+.... .++ .|+|++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 355679999999999999888764 34567 999999 9999887764 4566666544322 223 3999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh-h-ccccC-----ceecCHHHHHH
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-T-IYRAK-----GNHRTEQEFKQ 236 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~t~~e~~~ 236 (254)
.++||+++++...+|++++++++ |.+++.|...+.. ... .......... . ..... -+.++.+|+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~--~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA--LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH--HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 99999998888899999999998 6667766544321 000 0000000000 0 00000 12368999999
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
++++ ||++...-+
T Consensus 210 ll~~-Gf~~~~~~~ 222 (232)
T PRK06202 210 LAPQ-GWRVERQWP 222 (232)
T ss_pred HhhC-CCeEEeccc
Confidence 9999 999876544
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.55 E-value=5.2e-14 Score=111.28 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=88.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCC-c-cEEEeccccccCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA-A-DAIFMKWVLTTWT 170 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~-~-D~v~~~~vlh~~~ 170 (254)
..+..+|||||||+|..+..+++..|+.+ ++++|+ +++++.+++. +++.+..+|+.++++. . |+|++..+|||++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence 34567899999999999999999888888 999999 8999998774 6788999999886544 3 9999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+++..++++++.+++ +++++|.|...+.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 888899999999997 5788888876544
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=1.7e-13 Score=111.14 Aligned_cols=136 Identities=21% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC-CCC--ccEEEeccccccCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT 170 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~-~p~--~D~v~~~~vlh~~~ 170 (254)
...+|||||||+|.++..+++.+|..+ ++++|. +.++..++.. ++++++.+|+.+. ++. .|+|++.+++|+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 347899999999999999999999888 999999 8887666554 5789999999875 343 39999999999874
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
+ ...+|++++++|+|||++++.++...... .+.... ........+.++|.++++++ |+...+.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFSTFGPGTLH------------ELRQSF-GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEeCCccCHH------------HHHHHH-HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 46899999999999999999865432210 000000 00123345788899999888 8766543
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=9.5e-14 Score=115.78 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=103.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCCc-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~~- 157 (254)
+.++..++ ..+..+|||||||+|..+..+++. +.+ ++++|. +.+++.+++. -++++...|+.+. +++.
T Consensus 110 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f 185 (287)
T PRK12335 110 SEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY 185 (287)
T ss_pred HHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence 34444443 334569999999999999999886 467 999999 8887765532 3678888888665 4443
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+|++..++|++++++...++++++++|+|||++++......+....+ . +....++.+|+.++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~---------p~~~~~~~~el~~~ 248 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M---------PFSFTFKEGELKDY 248 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC--------C---------CCCcccCHHHHHHH
Confidence 999999999999888889999999999999999887654432221100 0 00112578888888
Q ss_pred HHhCCCCeeeEEEcc
Q 025363 238 GFFAGFPHLRLYRVL 252 (254)
Q Consensus 238 l~~aGf~~~~~~~~~ 252 (254)
++. |+++......
T Consensus 249 ~~~--~~i~~~~e~~ 261 (287)
T PRK12335 249 YQD--WEIVKYNENV 261 (287)
T ss_pred hCC--CEEEEEeccc
Confidence 854 8887765433
No 49
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=7.5e-15 Score=115.41 Aligned_cols=144 Identities=14% Similarity=0.068 Sum_probs=102.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C--CcEEEeCCCCCCC-C-C-ccEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P--GVTHIGGDMFKSI-P-A-ADAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~--~i~~~~~d~~~~~-p-~-~D~v~~~~vlh 167 (254)
++.+|||||||.|.++..+++.. .. +++.|+ +..++.++.. . .|++.+...++-. . + .|+|++..+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 57899999999999999999995 67 999999 8888888754 2 2446666555442 2 2 39999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc-----eecCHHHHHHHHHhCC
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-----NHRTEQEFKQLGFFAG 242 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~~~ll~~aG 242 (254)
|.+++ ..+++.|.+.+||||.+++........ ...........+..+ .+.| +..-++|+..++..+|
T Consensus 136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~---vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRI---VPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHh---cCCcchhHHHhcCHHHHHHhcccCC
Confidence 99776 469999999999999999987753321 111111111111111 2222 2346789999999999
Q ss_pred CCeeeEEEc
Q 025363 243 FPHLRLYRV 251 (254)
Q Consensus 243 f~~~~~~~~ 251 (254)
+.+.+...+
T Consensus 208 ~~~~~~~g~ 216 (243)
T COG2227 208 LKIIDRKGL 216 (243)
T ss_pred ceEEeecce
Confidence 998776543
No 50
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.53 E-value=3.1e-13 Score=109.18 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCCccEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~~D~v~~~~vl 166 (254)
..+..+|||||||+|.++..+++.. .. ++++|+ +.+++.+++. .++.+..+|+.......|+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchh
Confidence 4567899999999999999999874 45 899998 8888777653 37899999943222224999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
|++++++...+++++.+.+++++.+.+ .. .. +........................+.++|.++++++||++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTF-AP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEE-CC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 999999999999999998754443322 11 11 000000000000000000111234578999999999999999
Q ss_pred eEEEcc
Q 025363 247 RLYRVL 252 (254)
Q Consensus 247 ~~~~~~ 252 (254)
++..+.
T Consensus 211 ~~~~~~ 216 (230)
T PRK07580 211 RTERIS 216 (230)
T ss_pred eeeecc
Confidence 887653
No 51
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.48 E-value=3.3e-14 Score=99.96 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=72.3
Q ss_pred EEEecCcccHHHHHHHHHc---CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CCC--ccEEEec-cccc
Q 025363 101 LVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA--ADAIFMK-WVLT 167 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~---~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p~--~D~v~~~-~vlh 167 (254)
|||+|||+|..+..+++.+ |..+ ++++|+ +++++.+++. .+++++.+|+.+. ... .|+|++. .++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999997 4467 999999 8898877653 4899999999764 323 3999995 5599
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 025363 168 TWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG 189 (254)
++++++..++++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998
No 52
>PRK05785 hypothetical protein; Provisional
Probab=99.48 E-value=3.7e-13 Score=108.24 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~ 172 (254)
+..+|||||||+|..+..+++.+ +.+ ++++|. ++|++.+++. ..++.+|+.+. +++. |+|++..++|++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC-
Confidence 46799999999999999999887 557 999999 9999988764 34677888764 4443 99999999999865
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
..+++++++|+|||. +.+.|...+
T Consensus 126 -~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 126 -IEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred -HHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 468999999999993 445565444
No 53
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.47 E-value=5.5e-13 Score=103.40 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=102.4
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH----HhhCCC--CCCc-EEEeCCCCCC-C--C-------C-ccEE
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV----VAEAPS--IPGV-THIGGDMFKS-I--P-------A-ADAI 160 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~----~~~~~~--~~~i-~~~~~d~~~~-~--p-------~-~D~v 160 (254)
+|||||+|||..+..+++++|+++ --=-|. +.. .+-..+ .+++ .-+..|+.++ . + . .|+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999999999976 432343 221 111111 1221 1223455444 1 1 1 3999
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHh
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
++.+++|..+.+.+..+++.+.++|+|||.|++.-+...+..-.+ .....+|-..-. ..+....|..+++.++.++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~-rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRS-RDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhc-CCCCcCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999988776542111 111234433222 2333455899999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+..+...+|.
T Consensus 183 ~GL~l~~~~~MPA 195 (204)
T PF06080_consen 183 HGLELEEDIDMPA 195 (204)
T ss_pred CCCccCcccccCC
Confidence 9999998888763
No 54
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.46 E-value=2.5e-13 Score=103.77 Aligned_cols=172 Identities=14% Similarity=0.096 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C
Q 025363 69 MNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P 141 (254)
Q Consensus 69 ~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~ 141 (254)
....|++.|..+.+.+...+-... ..+....||+||||||..-.. ..--|..+ ++.+|. |.|.+-+.+. .
T Consensus 49 ft~~yne~~~~ykrelFs~i~~~~-gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 49 FTSIYNEIADSYKRELFSGIYYFL-GKSGKGDVLEVGCGTGANFKF-YPWKPINS-VTCLDPNEKMEEIADKSAAEKKPL 125 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHh-cccCccceEEecccCCCCccc-ccCCCCce-EEEeCCcHHHHHHHHHHHhhccCc
Confidence 345677777777665555554333 344556789999999987643 22225566 999998 7776544322 4
Q ss_pred CcE-EEeCCCCCC--CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchH
Q 025363 142 GVT-HIGGDMFKS--IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDI 216 (254)
Q Consensus 142 ~i~-~~~~d~~~~--~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~ 216 (254)
.+. |+.++..+- ++++ |+|++..+|+-. +++++.|++++++|+|||++++.|....+... +........+-
T Consensus 126 ~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep 201 (252)
T KOG4300|consen 126 QVERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEP 201 (252)
T ss_pred ceEEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhch
Confidence 566 888877654 3554 999999999855 67789999999999999999999998765432 11000011111
Q ss_pred hhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 217 FVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 217 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
... ....|...|++.| +.|+.|-|+..+..+
T Consensus 202 ~~~--~~~dGC~ltrd~~-e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 202 LWH--LESDGCVLTRDTG-ELLEDAEFSIDSCKR 232 (252)
T ss_pred hhh--eeccceEEehhHH-HHhhhcccccchhhc
Confidence 111 1345677777776 567888888776543
No 55
>PLN03075 nicotianamine synthase; Provisional
Probab=99.45 E-value=4.6e-13 Score=110.13 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCeEEEecCcccHHHHHH--HHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC---CccEEE
Q 025363 96 KGVKRLVDVGGSAGDCLRMI--LQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP---AADAIF 161 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l--~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p---~~D~v~ 161 (254)
.+..+|+|||||.|.++..+ ++.+|+.+ ++.+|. +++++.+++. ++|+|..+|..+..+ ..|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 36789999999988554443 34678989 999999 8888766542 679999999987643 239999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. ++|+|..++..++|+++++.|+|||.|++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999987788999999999999999999854
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=1.7e-12 Score=100.79 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-ccEEEeccccccC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADAIFMKWVLTTW 169 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~ 169 (254)
+..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|+.+..+. .|+|++...+|..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 356899999999999999999876 6 999999 8888877653 3578899998776444 4999998877765
Q ss_pred CHH-------------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecC
Q 025363 170 TDD-------------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 170 ~~~-------------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
++. -..++++++.+.|+|||++++.+.... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------~ 145 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------G 145 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------C
Confidence 432 135789999999999999999764221 2
Q ss_pred HHHHHHHHHhCCCCeeeEE
Q 025363 231 EQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~ 249 (254)
..++.+++++.||+...+.
T Consensus 146 ~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred hHHHHHHHHhCCCeEEEEE
Confidence 3466788889999876654
No 57
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.44 E-value=2.7e-13 Score=105.63 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----CCC-cEEEeCCCCCCCCC---ccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----IPG-VTHIGGDMFKSIPA---ADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----~~~-i~~~~~d~~~~~p~---~D~v~~~~vl 166 (254)
...+.||+|+|.|..+..++..+-+ + +-++|. +..++.+++ ..+ .++.+.-+.+..|+ +|+|++.+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~-VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-E-VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-E-EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcC-E-eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4679999999999999988765422 3 777787 888888773 234 34444444443443 3999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCee
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHL 246 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 246 (254)
-|++|++.+++|++|+++|+|+|.++|-|.+..... ..+|- ..++-.|+.+.|++++++||++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~------~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE------EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET------TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC------ccCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999998876431 01221 234556899999999999999998
Q ss_pred eEEEcc
Q 025363 247 RLYRVL 252 (254)
Q Consensus 247 ~~~~~~ 252 (254)
....=.
T Consensus 198 ~~~~Q~ 203 (218)
T PF05891_consen 198 KEEKQK 203 (218)
T ss_dssp EEEE-T
T ss_pred Eecccc
Confidence 866543
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=5e-13 Score=104.62 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=105.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-C----CCc--cEEEec
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-I----PAA--DAIFMK 163 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~----p~~--D~v~~~ 163 (254)
.+||+||||.|.....+++..|+ +. +..+|. |..++..++. .++.-..-|+..+ . +.+ |.+++-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 48999999999999999999888 78 899998 8888877664 4455444555544 1 223 999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCc--eecCHHHHHHHHHhC
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG--NHRTEQEFKQLGFFA 241 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~e~~~ll~~a 241 (254)
.+|..++++.-..++++++++|||||.|++-|....+...-.. .....++.+... ...|. ..++.+++.+++++|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYV-RgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYV-RGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEE-ccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999999999999876654311000 011122222221 11111 235899999999999
Q ss_pred CCCeeeE
Q 025363 242 GFPHLRL 248 (254)
Q Consensus 242 Gf~~~~~ 248 (254)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987664
No 59
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.43 E-value=2.2e-13 Score=104.36 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=80.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCCCCCc--cEEEeccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKSIPAA--DAIFMKWVLT 167 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~~p~~--D~v~~~~vlh 167 (254)
-..-.+++|+|||.|.++..|+.++. + ++++|. +..++.++++ ++|+++.+|+-+..|.+ |+|+++.++|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLY 117 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GG
T ss_pred ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhH
Confidence 55567999999999999999999974 3 888998 8888877653 78999999998876654 9999999999
Q ss_pred cCCH-HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTD-DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+++ ++...+++++.++|+|||.|++...
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9985 6788999999999999999999775
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.43 E-value=1.4e-12 Score=105.54 Aligned_cols=147 Identities=14% Similarity=0.003 Sum_probs=98.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC--C-C-ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI--P-A-ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~--p-~-~D~v~~~~ 164 (254)
..++.+|||||||+|.++..+++. ..+ ++++|. +.+++.+++. .++++...|+.+.. + . .|+|++.+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 446789999999999999988876 456 899998 7777666532 35777777775432 2 2 39999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc---cCceecCHHHHHHHHHhC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR---AKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~~a 241 (254)
++++.++ ...+|+.+.+.|+|||++++...... . ................... ......+.++|.++++++
T Consensus 123 ~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 123 MLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRN-L---KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred HhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCC-h---HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence 9998864 45789999999999999998754211 1 0000000000000000000 012335889999999999
Q ss_pred CCCeeeEEE
Q 025363 242 GFPHLRLYR 250 (254)
Q Consensus 242 Gf~~~~~~~ 250 (254)
||++++...
T Consensus 197 Gf~~v~~~~ 205 (233)
T PRK05134 197 GLEVQDITG 205 (233)
T ss_pred CCeEeeeee
Confidence 999887753
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.42 E-value=1.7e-12 Score=110.95 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~p 155 (254)
+-+++.++ .....+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++ .++++...|.++..+
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 33556664 44456999999999999999999999999 999999 7888777642 268999999987754
Q ss_pred C--ccEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A--ADAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~--~D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|+++-.+|. ++++...++++.+++.|+|||.|+++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 499999766553 556667899999999999999999874
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.42 E-value=1.8e-12 Score=100.60 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C-ccEEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-ADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~-~D~v~~~~vlh~ 168 (254)
+.+|||||||+|..+..++...|+.+ ++++|. +.+++.+++. ++++++.+|+.+..+ . .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 67999999999999999998888888 999999 7766554321 569999999977422 2 49998865 543
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ ..+++.+++.|+|||++++..
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEc
Confidence 3 467889999999999999863
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.41 E-value=9.4e-12 Score=98.95 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=82.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP- 155 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p- 155 (254)
.++.+|||+|||.|..+..|+++ +.. ++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 45679999999999999999987 567 999999 777765311 1468999999998632
Q ss_pred --C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 --A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 --~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|.|+-..++|+++++.....++.+.++|||||++++.....
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 2 399999999999999999999999999999999877765544
No 64
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.40 E-value=8.2e-13 Score=110.79 Aligned_cols=106 Identities=19% Similarity=0.298 Sum_probs=82.9
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-----C--CcEEEeCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-----P--GVTHIGGDMFKS-- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-----~--~i~~~~~d~~~~-- 153 (254)
.+.+++.+ +++.+|||+|||+|..+..|+++.+ ..+ ++++|+ ++|++.+++. + +|.++.+|+.+.
T Consensus 54 ~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 54 ADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 34445444 3467899999999999999999987 577 999999 8888766542 3 356789999874
Q ss_pred CCC-----c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 154 IPA-----A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 154 ~p~-----~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.+. . .++++...+++++++++..+|++++++|+|||.+++.
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 222 1 3555668899999999999999999999999999873
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=4.3e-12 Score=92.26 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~- 156 (254)
+++.+. ..+..+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++.. .++.++.+|.... .+.
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 455553 55677999999999999999999999888 999998 7777766532 5788888887642 223
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.|+|++....+ ...++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 49999876543 3358999999999999999874
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.38 E-value=4.8e-12 Score=106.06 Aligned_cols=143 Identities=15% Similarity=0.033 Sum_probs=92.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------CCcEEEeCCCCCCCCCccEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------~~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
++.+|||||||+|.++..+++. +.+ ++++|+ +.|++.++++ .++.|..+|+.+.....|+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 4679999999999999999986 457 999999 8888776543 247888888754322249999999
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFP 244 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 244 (254)
+++|++++....+++.+.+. .+||. +|.. .+.. .........-...............+.++++++++++||+
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~---~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT---LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc---hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCE
Confidence 99999888777888888864 45544 4422 1111 0000000000000000000011224799999999999999
Q ss_pred eeeEE
Q 025363 245 HLRLY 249 (254)
Q Consensus 245 ~~~~~ 249 (254)
+....
T Consensus 294 v~~~~ 298 (315)
T PLN02585 294 VARRE 298 (315)
T ss_pred EEEEE
Confidence 87644
No 67
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=4.3e-11 Score=98.21 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=92.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hH----HHhhCCCCCCcEEEeCCCCCCC-----CC-ccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PE----VVAEAPSIPGVTHIGGDMFKSI-----PA-ADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~----~~~~~~~~~~i~~~~~d~~~~~-----p~-~D~v~ 161 (254)
++++..+|||+|||+|.++..+++... ..+ ++++|+ +. +++.++..++|.++.+|+..+. .+ .|+|+
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 467889999999999999999999874 457 899998 54 5566655578999999986541 12 39998
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCcee-cCHHHHHHHHHh
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH-RTEQEFKQLGFF 240 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~e~~~ll~~ 240 (254)
+.... .++...++.++++.|||||+|+|... .... +. .....+ +. +|. ++|++
T Consensus 208 ~Dva~----pdq~~il~~na~r~LKpGG~~vI~ik-a~~i-------------d~------g~~pe~~f~-~ev-~~L~~ 261 (293)
T PTZ00146 208 ADVAQ----PDQARIVALNAQYFLKNGGHFIISIK-ANCI-------------DS------TAKPEVVFA-SEV-QKLKK 261 (293)
T ss_pred EeCCC----cchHHHHHHHHHHhccCCCEEEEEEe-cccc-------------cc------CCCHHHHHH-HHH-HHHHH
Confidence 86631 23455677789999999999999321 1111 00 000011 12 344 88999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
+||+.++...+.-
T Consensus 262 ~GF~~~e~v~L~P 274 (293)
T PTZ00146 262 EGLKPKEQLTLEP 274 (293)
T ss_pred cCCceEEEEecCC
Confidence 9999998877653
No 68
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.38 E-value=2.4e-12 Score=100.13 Aligned_cols=94 Identities=21% Similarity=0.182 Sum_probs=77.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC--ccEEEecccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~--~D~v~~~~vl 166 (254)
+++.+|||||||+|..+..++++.|+.+ ++++|. +.+++.+++. ++++++.+|+.+..+. .|+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3478999999999999999999999989 999999 8888766543 4599999998775323 499998652
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.....+++++++.|||||++++.+.
T Consensus 122 -----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 -----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2346789999999999999998753
No 69
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.37 E-value=3.3e-12 Score=102.76 Aligned_cols=144 Identities=15% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC-C--C-ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI-P--A-ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~-p--~-~D~v~~~~v 165 (254)
.+.+|||+|||+|.++..+++.. .. ++++|. +.+++.++.. .++++...|+.+.. + . .|+|++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 46799999999999999988764 45 889998 7777766542 25888888876542 2 3 399999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHHHHHHHHh
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQEFKQLGFF 240 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~ 240 (254)
+|+..+. ..+|++++++|+|||.+++.+...... ........ ... ... .... ....+..++.+++++
T Consensus 122 l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 122 LEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVG-AEY-ILR-IVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHh-hhh-hhh-cCCCCcCChhhcCCHHHHHHHHHH
Confidence 9988544 589999999999999999876532110 10000000 000 000 0011 123478899999999
Q ss_pred CCCCeeeEEEc
Q 025363 241 AGFPHLRLYRV 251 (254)
Q Consensus 241 aGf~~~~~~~~ 251 (254)
+||+++++..+
T Consensus 194 ~G~~i~~~~~~ 204 (224)
T TIGR01983 194 AGLRVKDVKGL 204 (224)
T ss_pred cCCeeeeeeeE
Confidence 99999887643
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.37 E-value=9.7e-12 Score=101.72 Aligned_cols=132 Identities=22% Similarity=0.268 Sum_probs=95.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~- 156 (254)
...+++.++ ....+|||+|||+|..+..+++.+|+.+ ++++|. +.+++.++.. ++++++.+|+++..+.
T Consensus 77 ~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 77 VEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 333444442 2346899999999999999999999888 999998 8888777643 4699999999887543
Q ss_pred -ccEEEeccccc------cCCHH------------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc
Q 025363 157 -ADAIFMKWVLT------TWTDD------------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL 211 (254)
Q Consensus 157 -~D~v~~~~vlh------~~~~~------------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~ 211 (254)
.|+|++.-..+ .+..+ ....+++++.+.|+|||++++...
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~--------------- 218 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG--------------- 218 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---------------
Confidence 39999843222 22111 124789999999999999887321
Q ss_pred ccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 212 LEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
....+++.++++++||+.+++..
T Consensus 219 ----------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ----------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ----------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 01345678899999998877654
No 71
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=2.6e-12 Score=99.49 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=83.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----CCCcEEEeCCCCCC-CCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----~~~i~~~~~d~~~~-~p~ 156 (254)
....+++..+ .-+..++||+|||.|..+..|+++ +.. ++++|. +..++.++. .-.|+....|+.+. +++
T Consensus 18 ~hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~ 93 (192)
T PF03848_consen 18 THSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE 93 (192)
T ss_dssp --HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT
T ss_pred CcHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC
Confidence 3455666675 556789999999999999999999 566 999998 666655432 13488899998776 555
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. |+|++..+++++..+...++++++.+.++|||++++...+.
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 4 99999999999998889999999999999999998866543
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=7.8e-12 Score=106.20 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=85.7
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-ccE
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-ADA 159 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~D~ 159 (254)
.+++.++ .....+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++.. -..+++..|.++..++ .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455553 33356899999999999999999999999 999999 7888877653 2356788888776554 499
Q ss_pred EEeccccccC---CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVLTTW---TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vlh~~---~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+++-.+|.. ..+...++++++.+.|||||.|+++-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999888862 345678999999999999999988654
No 73
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.35 E-value=1.1e-11 Score=101.17 Aligned_cols=140 Identities=22% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC------CCC-CCcEEEeCCCCCCCCC--c-cEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA------PSI-PGVTHIGGDMFKSIPA--A-DAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~------~~~-~~i~~~~~d~~~~~p~--~-D~v~~~~v 165 (254)
.+++|||||||.|.++..++.+.+. . ++++|. +....+. ... .++.+.. ...+++|. . |+|++..|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~-ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-S-VIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-E-EEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccCCcCEEEEeee
Confidence 4689999999999999999998543 4 899996 4332221 111 2233332 23333332 3 99999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCCh--hhhhhcccchHhhhhccccCce-ecCHHHHHHHHHhCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGN-HRTEQEFKQLGFFAG 242 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ll~~aG 242 (254)
|+|.. +....|+++++.|+|||.|++-..+++.....- +..+.. .| .+.- ..|...+..|++++|
T Consensus 192 LYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m-----~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 192 LYHRR--SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KM-----RNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred hhccC--CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CC-----CceEEeCCHHHHHHHHHHcC
Confidence 99974 457999999999999999998777666543210 000100 00 0000 138899999999999
Q ss_pred CCeeeEEEc
Q 025363 243 FPHLRLYRV 251 (254)
Q Consensus 243 f~~~~~~~~ 251 (254)
|+.+++..+
T Consensus 260 F~~v~~v~~ 268 (315)
T PF08003_consen 260 FKDVRCVDV 268 (315)
T ss_pred CceEEEecC
Confidence 999998765
No 74
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.35 E-value=1.8e-11 Score=98.91 Aligned_cols=140 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC------CCc-EEEeCCCCCC--C----CCccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI------PGV-THIGGDMFKS--I----PAADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~------~~i-~~~~~d~~~~--~----p~~D~ 159 (254)
....+||||+||+|.+....+..+|. .+ +...|. |..++..++. ..+ +|+.+|.|+. . |.-++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45679999999999999999999997 56 888898 7666665532 444 9999999986 2 22399
Q ss_pred EEeccccccCCHHH-HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC-----ceecCHHH
Q 025363 160 IFMKWVLTTWTDDE-CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GNHRTEQE 233 (254)
Q Consensus 160 v~~~~vlh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e 233 (254)
++++.++..|+|.+ +...|+.+++++.|||+|+....-+...- +.....+.- + .+ -+.||+.|
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e~IAr~Lts-----H-r~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----EMIARVLTS-----H-RDGKAWVMRRRSQAE 281 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----HHHHHHHhc-----c-cCCCceEEEecCHHH
Confidence 99999999999977 45579999999999999998654332221 111111100 0 01 14589999
Q ss_pred HHHHHHhCCCCeee
Q 025363 234 FKQLGFFAGFPHLR 247 (254)
Q Consensus 234 ~~~ll~~aGf~~~~ 247 (254)
+.+|+++|||+-++
T Consensus 282 mD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 282 MDQLVEAAGFEKID 295 (311)
T ss_pred HHHHHHHcCCchhh
Confidence 99999999997543
No 75
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=2.8e-11 Score=96.55 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=81.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..+..+|||+|||.|..+..|+++ +.+ ++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 445679999999999999999986 667 999999 776665311 1568999999998732
Q ss_pred C----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 A----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|+|+-+.++|+++++...+.++.+.++|+|||++++.....
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 2 299999999999999999999999999999999766544433
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.34 E-value=4.3e-12 Score=97.67 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=79.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-Cc-cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-AA-DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~~-D~v~~~~vlh 167 (254)
+..+|||+|||+|..+..+++++|+.+ ++.+|. +.+++.++.+ ..+++...|.++..+ .. |+|+++--+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 577999999999999999999999989 999999 8888877653 338899999999866 33 9999987777
Q ss_pred cCCH---HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 TWTD---DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~~~~---~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.-.+ .-..++++.+++.|+|||+|+++-
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 5443 346789999999999999997644
No 77
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.32 E-value=1.7e-11 Score=96.48 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---CCC--ccEEEeccccccC
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW 169 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---~p~--~D~v~~~~vlh~~ 169 (254)
+++.+|||||||+|.++..+++.. ... ++++|+ +++++.++. .+++++.+|+.+. .+. .|+|++.+++|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 356799999999999998887663 567 899999 888877654 4688888888653 333 3999999999998
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhccc----ch----HhhhhccccCceecCHHHHHHHHHhC
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLE----GD----IFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
++ ...+|+++.+.+++ +++.-+... .+....... +. +..........+..+.+++.++++++
T Consensus 89 ~d--~~~~l~e~~r~~~~---~ii~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~ 158 (194)
T TIGR02081 89 RN--PEEILDEMLRVGRH---AIVSFPNFG-----YWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL 158 (194)
T ss_pred cC--HHHHHHHHHHhCCe---EEEEcCChh-----HHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC
Confidence 65 45788888877653 333211110 000000000 00 00000001123456899999999999
Q ss_pred CCCeeeEEEcc
Q 025363 242 GFPHLRLYRVL 252 (254)
Q Consensus 242 Gf~~~~~~~~~ 252 (254)
||++++.....
T Consensus 159 Gf~v~~~~~~~ 169 (194)
T TIGR02081 159 NLRILDRAAFD 169 (194)
T ss_pred CCEEEEEEEec
Confidence 99998877654
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.29 E-value=8.6e-12 Score=98.68 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC--ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA--ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~--~D~v~~~ 163 (254)
+..+|||||||+|..+..+++.+|+.+ ++++|. +++++.+++. ++++++.+|+.+. ++. .|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 567999999999999999999999888 999999 8888776542 5799999998322 333 2999886
Q ss_pred cccccCC------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWT------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
....... ......++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432111 1123678999999999999999864
No 79
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.28 E-value=9e-11 Score=89.37 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=81.9
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC---cc
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA---AD 158 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~---~D 158 (254)
+..+ ...++..++|||||||..+.+++..+|..+ ++++|. ++.++..+.+ +++.++.+|.-+.+++ .|
T Consensus 27 ls~L-~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKL-RPRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhh-CCCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 3555 478889999999999999999999999999 999998 7777766553 8899999999776433 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|++...- ....+|+.+...|||||+|++.-
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCcCCeEEEEe
Confidence 99997762 34689999999999999998843
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=3.1e-11 Score=95.79 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=78.0
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p 155 (254)
...+++.++ ..++.+|||||||+|..+..+++..+ ..+ ++.+|. +++++.++++ .+++++.+|+.+.++
T Consensus 61 ~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 344556663 66788999999999999999998875 456 999999 8888766542 358999999987644
Q ss_pred C---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 156 A---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 156 ~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. .|+|++..++++++ +++.+.|+|||+|++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 2 39999988877553 4678899999999884
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.27 E-value=9.6e-11 Score=93.09 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=77.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC---------CCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~---------~p~ 156 (254)
++.+.+..++++.+|||||||+|.++..+++..+ ..+ ++++|+.++. ..+++.++.+|+.+. .+.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444443356788999999999999999999874 457 9999994432 235799999999874 233
Q ss_pred --ccEEEeccccccCCHH---------HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 --ADAIFMKWVLTTWTDD---------ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~---------~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++..+.+..... ....+|+.++++|+|||++++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3999987655543221 125689999999999999999654
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=8.8e-11 Score=97.42 Aligned_cols=122 Identities=24% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC-C-ccEEEeccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-A-ADAIFMKWV 165 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-~-~D~v~~~~v 165 (254)
..+..+|||+|||+|..+..+++..|..+ ++++|+ +.+++.++++ .++.++.+|+++..+ . .|+|++.--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 45678999999999999999999999888 999999 7777766542 579999999987754 3 399987421
Q ss_pred c------ccCC------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhc
Q 025363 166 L------TTWT------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 221 (254)
Q Consensus 166 l------h~~~------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
. +... -+...++++++.+.|+|||++++ +...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g~----------------------- 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIGY----------------------- 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EECc-----------------------
Confidence 1 1111 12236789999999999999887 2100
Q ss_pred cccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 222 YRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 222 ~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
...+++.+++++.||+.+++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEE
Confidence 12345788889999986655
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.25 E-value=1.8e-11 Score=96.34 Aligned_cols=97 Identities=13% Similarity=0.239 Sum_probs=75.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC-c-cEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA-A-DAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~-~-D~v~~~ 163 (254)
...+|||||||+|.++..+++++|+.. ++++|+ +.+++.++.. .+++++.+|+.+. ++. . |.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999999999999 999999 8887776542 5799999999652 343 2 888775
Q ss_pred cccccCCHHH-------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWTDDE-------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~~~~-------~~~il~~~~~~L~pgG~l~i~d 195 (254)
.... |+... ...++++++++|||||.|++..
T Consensus 95 ~pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5332 22211 1468999999999999998864
No 84
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=5.9e-11 Score=94.61 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=79.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p 155 (254)
....+++.++ ..++.+|||||||+|..+..+++..+ +.+ ++.+|. +++++.++++ .+++++.+|..+..+
T Consensus 64 ~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 64 MVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 3455677774 78889999999999999999888864 457 999999 8888877653 579999999987633
Q ss_pred -C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 -A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 -~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++...++.. .+.+.+.|||||+|++..
T Consensus 142 ~~~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 2 3999987776543 346677899999998853
No 85
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.24 E-value=3.2e-11 Score=91.84 Aligned_cols=123 Identities=21% Similarity=0.239 Sum_probs=81.6
Q ss_pred Eeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 127 NFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 127 ~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++|. ++|++.++++ .+|+++.+|+.+. +++ . |+|++..++|++++ ..++|++++++|||||+|++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEEE
Confidence 6788 8888876432 3699999999765 444 3 99999999999864 46899999999999999999
Q ss_pred EccccCCCCCChhhhhhcc---cchHhhhhccccC---------ceecCHHHHHHHHHhCCCCeeeEEEcc
Q 025363 194 CEPVLPDDSNESQRTRALL---EGDIFVMTIYRAK---------GNHRTEQEFKQLGFFAGFPHLRLYRVL 252 (254)
Q Consensus 194 ~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~t~~e~~~ll~~aGf~~~~~~~~~ 252 (254)
.|...++..-......... ......+. .... ....+.+++.++|+++||+.++.....
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 80 LDFNKSNQSVTTFMQGWMIDNVVVPVATVY-DLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EECCCCChHHHHHHHHHHccchHhhhhHHh-CChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9987654311100000000 00000000 0000 122488999999999999988776654
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.23 E-value=3.1e-10 Score=88.66 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CC-cEEEeCCCCCCCCC--ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PG-VTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~-i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
.++.+|||+|||+|.++..+++. +.+ ++++|. +++++.+++. ++ +.++.+|+.+.+++ .|+|++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 45679999999999999999988 567 999999 8888776432 22 88999999887544 39999865
Q ss_pred ccccCC-------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC
Q 025363 165 VLTTWT-------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 165 vlh~~~-------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
.+.... ......+++++.++|||||++++.....
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------------- 151 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------------- 151 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------------------
Confidence 443211 1234678999999999999988753211
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEE
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
...+++.++++++||++..+.
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeee
Confidence 123457788999999876653
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=2e-10 Score=90.67 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred hhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---CC-
Q 025363 90 EGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---PA- 156 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p~- 156 (254)
..+ ...++.+|||+|||+|.++..+++.. +..+ ++++|. +.+++.++++ +++.++.+|+.+.. +.
T Consensus 34 ~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 444 36778899999999999999998875 4567 999999 8888866532 57889999987642 22
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.|+|++... ..+...+++.+.+.|+|||++++
T Consensus 112 ~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 499988432 23456899999999999999986
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1e-10 Score=93.49 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
...+++.++ ..++.+|||||||+|..+..+++..+ +.+ ++.+|. +++++.++++ .+++++.+|..+..+.
T Consensus 66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 445666664 77889999999999999999999865 467 899998 8888877643 5799999999875332
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.|+|++...... +.+.+.+.|+|||+|++.
T Consensus 144 ~~~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence 499998765543 345678899999999884
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=1.1e-10 Score=92.05 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=77.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC-C
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP-A 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p-~ 156 (254)
++..++ ..++.+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ .+++++.+|+.+. .. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455553 66788999999999999999998888888 999999 8888877643 5689999988653 22 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|.+++.. .....++++++++.|+|||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 36655421 12346899999999999999998764
No 90
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=5.6e-11 Score=98.41 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC---CeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCCc--cEEEecccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI---CEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~ 168 (254)
+..+|||||||+|.++..+++.++.. . ++++|+ +.+++.+++. +++.+..+|..+. ++.. |+|+....-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 45789999999999999999987743 6 899999 8888887654 7799999998764 4443 999875431
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
..+++++++|||||+|++..+
T Consensus 162 -------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 -------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -------CCHHHHHhhccCCCEEEEEeC
Confidence 235789999999999998754
No 91
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.5e-10 Score=93.33 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=87.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-c
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-A 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~ 157 (254)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+ ++.+|. ...++.++++ .+..+...|.+++..+ .
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44677775 55556999999999999999999999999 999998 7777777765 2335778888888555 4
Q ss_pred cEEEeccccccC---CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTTW---TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~~---~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+|+++=-+|.- ...-..+++++.++.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999852 233355899999999999999988654
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.18 E-value=1.3e-10 Score=96.68 Aligned_cols=96 Identities=23% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc--
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW-- 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~-- 164 (254)
+..+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ .+|+++.+|+++.++. .|+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 457899999999999999999999989 999999 8888877653 4799999999877654 39999841
Q ss_pred -----------ccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 -----------VLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 -----------vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.+++.+. +....+++++.+.|+|||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0111110 1236789999999999999876
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.18 E-value=3.8e-10 Score=91.73 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=92.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCC-CC-ccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSI-PA-ADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~-p~-~D~v~~~~vlh~~~~~ 172 (254)
...+|||+|||+|.++..++++.+..+ ++++|+ +.+++.+++. ++++++.+|+.+.. +. .|+|++.-.+++.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 356999999999999999988877778 999999 8898887764 67999999998764 33 3999997777764433
Q ss_pred H------------------HHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHH
Q 025363 173 E------------------CKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEF 234 (254)
Q Consensus 173 ~------------------~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 234 (254)
+ ..+.++.....|+|+|.+.++ +...+ .+ ....+.+|+
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--yss~~-----------~y-----------~~sl~~~~y 198 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--YSGRP-----------YY-----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--Eeccc-----------cc-----------cccCCHHHH
Confidence 2 135667778888899877665 11100 00 112478899
Q ss_pred HHHHHhCCCCe
Q 025363 235 KQLGFFAGFPH 245 (254)
Q Consensus 235 ~~ll~~aGf~~ 245 (254)
+.+|+++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999963
No 94
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=4.1e-10 Score=86.30 Aligned_cols=146 Identities=19% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC---CCCc--cEEEecccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~---~p~~--D~v~~~~vlh~ 168 (254)
.+++.+|||+|||.|.+...|.+. .+++ +.++++ ++.+..+.+ ..++++.+|+.+. +|+. |.||++.+|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 457899999999999999888775 5788 888888 554444443 4688999999886 4543 99999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhh--------hhccccCceecCHHHHHHHHHh
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV--------MTIYRAKGNHRTEQEFKQLGFF 240 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~e~~~ll~~ 240 (254)
+ ....++|+++.|+ |.+.+|.=+... .|..+....+.=.| .+-.+++-+..|..+++++.++
T Consensus 88 ~--~~P~~vL~EmlRV---gr~~IVsFPNFg-----~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 88 V--RRPDEVLEEMLRV---GRRAIVSFPNFG-----HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred H--hHHHHHHHHHHHh---cCeEEEEecChH-----HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence 7 4567888888766 555555432211 11111110000000 0001233344589999999999
Q ss_pred CCCCeeeEEEccC
Q 025363 241 AGFPHLRLYRVLD 253 (254)
Q Consensus 241 aGf~~~~~~~~~~ 253 (254)
.|+++.+...+.+
T Consensus 158 ~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 158 LGIRIEERVFLDG 170 (193)
T ss_pred CCCEEEEEEEEcC
Confidence 9999998776543
No 95
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.17 E-value=3.5e-10 Score=92.47 Aligned_cols=113 Identities=21% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C----CcEEEeCCCCCCCCCccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P----GVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~----~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.++.+|||+|||+|.++..+++..+ .+ ++++|+ +.+++.++++ . ++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence 4678999999999999988766543 36 899999 8888877654 2 233333321 24999875322
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
+....+++++.+.|||||++++.+.... ..+++.+.+++.||++.+
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEE
Confidence 3456789999999999999998654211 234677888999998877
Q ss_pred EEE
Q 025363 248 LYR 250 (254)
Q Consensus 248 ~~~ 250 (254)
...
T Consensus 236 ~~~ 238 (250)
T PRK00517 236 VLE 238 (250)
T ss_pred EEE
Confidence 654
No 96
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.16 E-value=6.4e-10 Score=95.61 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC-CC-C--ccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IP-A--ADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~-~p-~--~D~v~~~~vl 166 (254)
+..+|||+|||+|..+..+++..|+.+ ++++|+ +.+++.++++ .+++++.+|+++. .+ . .|+|+++--.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 456999999999999999999999989 999999 8898877654 4799999999875 33 2 3999984321
Q ss_pred ccCC-----------------------HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccc
Q 025363 167 TTWT-----------------------DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 223 (254)
Q Consensus 167 h~~~-----------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
..-+ .+-...+++.+.+.|+|||++++ |...
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~------------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF------------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc-------------------------
Confidence 1000 01134678888889999998765 3211
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
...+.+.+++++.||+.+++.
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEE
Confidence 123456788888898766543
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=3.2e-10 Score=94.49 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=75.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEec-----
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMK----- 163 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~----- 163 (254)
.+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ .+++++.+|+++.++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 6899999999999999999999889 999999 8888777653 3599999999987654 3999884
Q ss_pred --------cccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 164 --------WVLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 164 --------~vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.++++-+. +....+++++.+.|+|||.+++
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22332211 2456899999999999999876
No 98
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.16 E-value=3.8e-10 Score=90.43 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=94.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---C--ccEEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---A--ADAIF 161 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---~--~D~v~ 161 (254)
.....+|||+|||+|..+..+++++++++ ++++++ +++.+.|++. +||+++..|+.+..+ . .|+|+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 44588999999999999999999999999 999999 7777777653 799999999977632 2 38999
Q ss_pred eccccccCCHH----------------HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccC
Q 025363 162 MKWVLTTWTDD----------------ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 225 (254)
Q Consensus 162 ~~~vlh~~~~~----------------~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (254)
++=-.+.-... ...++++.++++|||||++.++-..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------------------- 172 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------------------- 172 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH----------------------------
Confidence 96554433222 2457999999999999999885421
Q ss_pred ceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 226 GNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 226 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
-...|+.+++++.+|...++..+
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEe
Confidence 01235667777777777666544
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.15 E-value=2.9e-10 Score=97.12 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=79.5
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC---CCCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK---SIPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~---~~p~ 156 (254)
.+++.+. ...+..+||||||+|.++..+++++|+.. ++++|+ +.+++.+... .+|.++.+|+.. .++.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 3455553 34466899999999999999999999999 999998 7776665432 679999999843 3554
Q ss_pred c--cEEEeccccccCCHHH-----HHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 A--DAIFMKWVLTTWTDDE-----CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~--D~v~~~~vlh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d 195 (254)
+ |.|++.... -|+... ...+|+.++++|+|||.+.+..
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 998875432 243221 2579999999999999998854
No 100
>PRK14967 putative methyltransferase; Provisional
Probab=99.14 E-value=1.5e-09 Score=87.26 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-c-cEEEecccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-A-DAIFMKWVL 166 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~-D~v~~~~vl 166 (254)
..++.+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.++.+|+.+.++. . |+|++.--.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence 5567899999999999999988763 346 999999 8888765543 3578889998776543 3 999986322
Q ss_pred ccCC-------------------HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 167 TTWT-------------------DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 167 h~~~-------------------~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+.-+ ......+++++.+.|||||++++.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2110 0124568899999999999999865433
No 101
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.13 E-value=2e-10 Score=86.31 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=90.1
Q ss_pred CCCC-eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CCCc-cEEEec
Q 025363 96 KGVK-RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPAA-DAIFMK 163 (254)
Q Consensus 96 ~~~~-~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p~~-D~v~~~ 163 (254)
+..+ +|||+|||.|.++..|++.--... .+++|. +..++.|+.. +.|+|+..|++++ .+.. |+|+=.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeec
Confidence 3344 999999999999999999865555 677787 6665555421 4499999999996 4444 887754
Q ss_pred ccccc------CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 164 WVLTT------WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 164 ~vlh~------~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
..+.. -........+..+.+.|+|||+++|... .+|.+|+.+.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~ 192 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEE 192 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHH
Confidence 44332 2223335678899999999999988332 2578888888
Q ss_pred HHhCCCCeeeEEEcc
Q 025363 238 GFFAGFPHLRLYRVL 252 (254)
Q Consensus 238 l~~aGf~~~~~~~~~ 252 (254)
++.-||......+.+
T Consensus 193 f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 193 FENFNFEYLSTVPTP 207 (227)
T ss_pred HhcCCeEEEEeeccc
Confidence 888888877766554
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=7.3e-10 Score=92.44 Aligned_cols=94 Identities=20% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC-ccEEEecccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~-~D~v~~~~vl 166 (254)
.++.+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .++.+...+.....+. .|+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 35689999999999999887765 3446 999999 8888777653 3466666653332333 4999986443
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+....+++++++.|||||+|++...
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3346789999999999999998664
No 103
>PRK04457 spermidine synthase; Provisional
Probab=99.13 E-value=1.7e-10 Score=94.81 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=76.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC---CCC-ccEEEec
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS---IPA-ADAIFMK 163 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~---~p~-~D~v~~~ 163 (254)
++..+|||||||+|.++..+++.+|+.+ ++++|+ |++++.+++. ++++++.+|..+. .++ .|+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3467899999999999999999999999 999999 9998877642 6799999998654 333 4999874
Q ss_pred ccccc--CCHH-HHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WVLTT--WTDD-ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~--~~~~-~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. ++. .+.. ...++++++++.|+|||++++.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2 221 1111 1268999999999999999985
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=2.4e-10 Score=95.90 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc----
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW---- 164 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~---- 164 (254)
.+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++++ ++|+++.+|+++.++. .|+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999999999999 999999 8888877653 4699999999877654 39999851
Q ss_pred ---------ccccCCH----------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 ---------VLTTWTD----------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 ---------vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i 193 (254)
.+++.+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0111111 2246889999999999999887
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.11 E-value=8.2e-10 Score=86.45 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=73.6
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC---------CCC-
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA- 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~---------~p~- 156 (254)
+.+.+....++.+|||+|||+|.++..+++++ +..+ ++++|+.++. ..+++.++.+|+.+. .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 33434345678899999999999999999887 4567 9999993322 235788998898763 233
Q ss_pred -ccEEEeccccc---cCC------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 -ADAIFMKWVLT---TWT------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 -~D~v~~~~vlh---~~~------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++....| .|. .+...++++.++++|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 39999853321 121 1224689999999999999999853
No 106
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.10 E-value=2.1e-09 Score=87.86 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCCCC----C-ccEEEecccc-
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKSIP----A-ADAIFMKWVL- 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~~p----~-~D~v~~~~vl- 166 (254)
+..+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+++..+ . .|+|++.--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 346899999999999999999999888 999999 8888887764 347899999987543 2 3999874321
Q ss_pred -----ccCCHH------------------HHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 -----TTWTDD------------------ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 -----h~~~~~------------------~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+..+++ -..++++.+.+.|+|||++++.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 1347888899999999998873
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.09 E-value=1.2e-09 Score=97.58 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc--c
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW--V 165 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~--v 165 (254)
..+|||+|||+|..+..+++.+|+.+ ++++|+ +.+++.++.+ ++++++.+|+++..+. .|+|+++- +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 46899999999999999999999999 999999 8888877653 4799999999876543 39999831 1
Q ss_pred c------------ccCC------H----HHHHHHHHHHHHhCCCCCEEEE
Q 025363 166 L------------TTWT------D----DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 166 l------------h~~~------~----~~~~~il~~~~~~L~pgG~l~i 193 (254)
- .+.+ . +-...+++++.+.|+|||.+++
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 1 1111 0 1234678899999999999876
No 108
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=6.5e-10 Score=87.30 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=80.4
Q ss_pred HHHHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------------
Q 025363 85 MTSVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------------------- 140 (254)
Q Consensus 85 ~~~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------------------- 140 (254)
.+..+..++ .|-....+|||||.+|.++..+++.+.... +.++|+ +..+..|++.
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 344444444 567789999999999999999999998878 999999 6666666542
Q ss_pred --------------------------CCcEEEeCCCCCC-CCCccEEEeccc---cc-cCCHHHHHHHHHHHHHhCCCCC
Q 025363 141 --------------------------PGVTHIGGDMFKS-IPAADAIFMKWV---LT-TWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 141 --------------------------~~i~~~~~d~~~~-~p~~D~v~~~~v---lh-~~~~~~~~~il~~~~~~L~pgG 189 (254)
.++.+..-||.+. .|..|+|+|..+ +| +|.|+....+++++++.|.|||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 1222333445433 344588887433 34 6899999999999999999999
Q ss_pred EEEE
Q 025363 190 KLIA 193 (254)
Q Consensus 190 ~l~i 193 (254)
+|++
T Consensus 204 iLvv 207 (288)
T KOG2899|consen 204 ILVV 207 (288)
T ss_pred EEEE
Confidence 9887
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.07 E-value=1.4e-09 Score=75.59 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=74.9
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC------CCCCcEEEeCCCCCCC--C-C-ccEEEecccccc
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP------SIPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTT 168 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~------~~~~i~~~~~d~~~~~--p-~-~D~v~~~~vlh~ 168 (254)
+|+|+|||.|..+..+++ .+..+ ++++|. +.....++ ...++.+..+|+.+.. + . .|++++...++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999999988 55667 999998 66665544 1267899999998863 2 2 399999999987
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+ .+....+++.+.+.|+|||.+++.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 467789999999999999999875
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.06 E-value=3e-09 Score=90.48 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=77.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~ 156 (254)
+..++... .++++.+|||+|||+|.++...+.. +.. ++++|+ +.++..++.+ ..+.+..+|+.+. .+.
T Consensus 171 a~~~~~l~-~~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 171 ARAMVNLA-RVTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHh-CCCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 44455555 3778889999999999999886654 567 999999 8888766543 3478899999875 333
Q ss_pred -c-cEEEeccccc-------cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 -A-DAIFMKWVLT-------TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 -~-D~v~~~~vlh-------~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. |+|++.--.. +...+-..++|+++++.|||||++++.-
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 3 9999842211 1111335789999999999999998854
No 111
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=4.5e-09 Score=83.76 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=84.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..++.+||+.|||.|.-+..|+++ +.. ++++|+ +..++.+.+ ..+|++.++|+|+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 345689999999999999999998 556 999999 766666321 1479999999998732
Q ss_pred ------CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 ------AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ------~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
..|+|+-+.+|+.++++...+..+++.++|+|||++++.....
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1399999999999999999999999999999999988876543
No 112
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.04 E-value=7.8e-09 Score=85.45 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCeEEEecCcccH----HHHHHHHHcC----CCCeEEEeec-hHHHhhCCCC----------------------------
Q 025363 98 VKRLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVAEAPSI---------------------------- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~----~~~~l~~~~~----~~~~~~~~D~-~~~~~~~~~~---------------------------- 140 (254)
..+|...||+||. .++.+.+..+ +.+ +++.|+ +.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 4799999999998 3333334332 356 899998 7777766531
Q ss_pred ---------CCcEEEeCCCCCC-CC--Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 ---------PGVTHIGGDMFKS-IP--AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p--~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+|.|..+|..++ .| .. |+|+|++++.+++++...+++++++++|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4589999999985 43 33 99999999999999999999999999999999988854
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.04 E-value=2.2e-09 Score=85.70 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~- 156 (254)
...+++.++ ..++.+|||||||+|..+..+++... + ++.+|. +++++.++++ .++++..+|..+..+.
T Consensus 67 ~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 67 VARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcC
Confidence 334555563 67789999999999999987777653 5 888998 8887766543 4699999998776432
Q ss_pred --ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 --ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 --~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 143 ~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 3999998766543 4567889999999988543
No 114
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.02 E-value=1.5e-09 Score=86.54 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=95.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------------------CCCcEEEeCCCCCCCC
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------------------~~~i~~~~~d~~~~~p 155 (254)
..+..+||..|||.|.-+..|+++ +.+ ++++|+ +..++.+.+ ..+|++.++|+|+..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 566789999999999999999988 456 999999 777766410 0468999999999633
Q ss_pred C----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC-ChhhhhhcccchHhhhhccccCceecC
Q 025363 156 A----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSN-ESQRTRALLEGDIFVMTIYRAKGNHRT 230 (254)
Q Consensus 156 ~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t 230 (254)
. .|+|+=+..|+-++++...+..+.++++|+|||++++.....+.... +|+. ..+
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf--------------------~v~ 171 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF--------------------SVT 171 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------------------------
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC--------------------CCC
Confidence 2 29999999999999999999999999999999995544433332211 1211 136
Q ss_pred HHHHHHHHHhCCCCeeeEE
Q 025363 231 EQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 231 ~~e~~~ll~~aGf~~~~~~ 249 (254)
.+|+.+++. .+|++..+.
T Consensus 172 ~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEe
Confidence 788888888 788766554
No 115
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.01 E-value=6.6e-10 Score=86.61 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=100.1
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCC---CcEEE-eCCCCCC-CCC-c
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIP---GVTHI-GGDMFKS-IPA-A 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~---~i~~~-~~d~~~~-~p~-~ 157 (254)
..+.+...+ ..+..++||+|||||-....+-..-.. .+++|+ ..|++.+.++. ....- ..+|.++ -++ .
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 444555553 555789999999999999988777443 678899 88999998762 11111 1124333 223 4
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCce-ecCHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGN-HRTEQEFKQ 236 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ 236 (254)
|+|....||-.+ -....++.-+...|+|||.+.++-...+.... +++ .+..+ -.+..-+++
T Consensus 190 DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-------------f~l---~ps~RyAH~~~YVr~ 251 (287)
T COG4976 190 DLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-------------FVL---GPSQRYAHSESYVRA 251 (287)
T ss_pred cchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCC-------------eec---chhhhhccchHHHHH
Confidence 999999999877 45678999999999999999987655544311 000 01111 135667889
Q ss_pred HHHhCCCCeeeEEEcc
Q 025363 237 LGFFAGFPHLRLYRVL 252 (254)
Q Consensus 237 ll~~aGf~~~~~~~~~ 252 (254)
+++..||++++++++.
T Consensus 252 ~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 252 LLAASGLEVIAIEDTT 267 (287)
T ss_pred HHHhcCceEEEeeccc
Confidence 9999999999988753
No 116
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.2e-09 Score=87.33 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=85.3
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcE----EEeCCCCCCCCC--
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVT----HIGGDMFKSIPA-- 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~----~~~~d~~~~~p~-- 156 (254)
+.++.+ ..++.+|||+|||+|.++++.++.. ..+ ++++|+ |..++.++++ +.|+ ....+..+....
T Consensus 154 ~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLG-A~~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 154 EALEKL--LKKGKTVLDVGCGSGILAIAAAKLG-AKK-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHh--hcCCCEEEEecCChhHHHHHHHHcC-Cce-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 344444 3478999999999999999988764 335 899999 7777777765 4444 222222222222
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHH
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQ 236 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 236 (254)
.|+|+++= |- +-...+...+.+.+||||+++++-..-. -.+.+.+
T Consensus 230 ~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~ 274 (300)
T COG2264 230 FDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAE 274 (300)
T ss_pred ccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHH
Confidence 39988743 42 3456889999999999999988553211 1345677
Q ss_pred HHHhCCCCeeeEEE
Q 025363 237 LGFFAGFPHLRLYR 250 (254)
Q Consensus 237 ll~~aGf~~~~~~~ 250 (254)
.+.++||.++++..
T Consensus 275 a~~~~gf~v~~~~~ 288 (300)
T COG2264 275 AYEQAGFEVVEVLE 288 (300)
T ss_pred HHHhCCCeEeEEEe
Confidence 78888888877654
No 117
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.99 E-value=2.8e-09 Score=82.54 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=97.1
Q ss_pred hhhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhc----CCchhHHHHHhhcCCCCCCCeEEEecCccc
Q 025363 34 SMWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSG----VSVPFMTSVLEGYNGFKGVKRLVDVGGSAG 109 (254)
Q Consensus 34 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~----~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G 109 (254)
.-++.|-|.+-+.. +...++.+.++|+....|+.+.+. +-..-.+.+++.+...++...|.|+|||.+
T Consensus 13 srFR~lNE~LYT~~--------s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA 84 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS--------SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDA 84 (219)
T ss_dssp HHHHHHHHHHHHS---------HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-
T ss_pred CchHHHHHhHhcCC--------HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchH
Confidence 44566666665432 112344566788888777776644 333346667777753445679999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCC
Q 025363 110 DCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALP 186 (254)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~ 186 (254)
.++..+.+ ..+ +.-+|+-.. +++ ++..|+... ++.. |++++.-.|=. .+....++++.|+||
T Consensus 85 ~la~~~~~---~~~-V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 85 KLAKAVPN---KHK-VHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK 149 (219)
T ss_dssp HHHHH--S-------EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE
T ss_pred HHHHhccc---Cce-EEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec
Confidence 99966542 245 888886321 233 556788553 4543 99887666632 355789999999999
Q ss_pred CCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 187 AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 187 pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
|||.|.|.|.... .-..+++.+.+++-||+....
T Consensus 150 ~~G~L~IAEV~SR----------------------------f~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 150 PGGILKIAEVKSR----------------------------FENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEEEEEEEEEGGG-----------------------------S-HHHHHHHHHCTTEEEEEE
T ss_pred cCcEEEEEEeccc----------------------------CcCHHHHHHHHHHCCCeEEec
Confidence 9999999886432 114456778888889987653
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.97 E-value=1.9e-09 Score=89.59 Aligned_cols=98 Identities=26% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------CCCcEEEeCCCCCCCC---C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~~~i~~~~~d~~~~~p---~-~D~ 159 (254)
++..+||+||||+|..+..+++..+..+ ++++|+ +.+++.+++ .+|++++.+|..+.++ + .|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3567999999999999999997644456 999999 888887764 2689999999876532 2 399
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++...-+..+... ..++++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99854333222211 367899999999999998874
No 119
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.96 E-value=6.6e-10 Score=79.95 Aligned_cols=95 Identities=25% Similarity=0.258 Sum_probs=72.7
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---CC--ccEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---PA--ADAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p~--~D~v~~~~v 165 (254)
.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++.. .+++++.+|+.+.. +. .|+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999998 667 999999 7776665542 67999999997652 33 399999665
Q ss_pred cccCC-H-----HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWT-D-----DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~-~-----~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+... . +....+++++.+.|||||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 55321 1 134688999999999999998753
No 120
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.96 E-value=3e-09 Score=83.26 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC--------------------------
Q 025363 97 GVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI-------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~-------------------------- 140 (254)
+..+|...||++|. +++.+.+..+ ..+ +.+.|+ +.+++.|++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 56899999999998 3333333222 235 788999 8888887641
Q ss_pred --------CCcEEEeCCCCCC-CC-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 --------PGVTHIGGDMFKS-IP-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 --------~~i~~~~~d~~~~-~p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+|.|...|..+. .+ .. |+|+|++||-.++++...+++++++++|+|||.|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 5799999999993 33 23 99999999999999999999999999999999999954
No 121
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.96 E-value=7.6e-09 Score=82.82 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC-ccEEEeccccccCCHHHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~~~~~~ 174 (254)
...++||||+|.|..+..++..+.+ +.+.+. +.|....++ ..++++..|-....+. .|+|.|.++|-.- +..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRP 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCH
Confidence 3578999999999999999998876 566677 777766655 3455554443333333 3999999999865 456
Q ss_pred HHHHHHHHHhCCCCCEEEEEccccCCC-----C--CChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 175 KLIMENCYKALPAGGKLIACEPVLPDD-----S--NESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~d~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
..+|+.++++|+|+|++++.=...-.+ . ..++.+. +++ ....-+-....+.+.|+.+||++..
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~----l~~------~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL----LPV------KGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh----cCC------CCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999988753221110 0 1111110 111 0111111234455889999999999
Q ss_pred EEEcc
Q 025363 248 LYRVL 252 (254)
Q Consensus 248 ~~~~~ 252 (254)
..++|
T Consensus 238 ~tr~P 242 (265)
T PF05219_consen 238 WTRLP 242 (265)
T ss_pred EeccC
Confidence 88765
No 122
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.95 E-value=2.4e-09 Score=84.23 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE-------eCCCCCCC--CCc-cEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI-------GGDMFKSI--PAA-DAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~-------~~d~~~~~--p~~-D~v~~~~vl 166 (254)
...++|||||+|..++.++..+.+ +++.|. +.|++.+++.++++.. ..++.+.. ++. |+|++..++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 348999999999999999888765 889999 9999999887544332 12222222 233 999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|-+ +..++.+.++|+||+.|.++.+-.+.
T Consensus 111 HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 966 34689999999998877555443333
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=7.2e-09 Score=87.23 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
...+++..+ .+++.+|||||||+|..+..+++..+. .. ++++|. +++++.+++. .++.++.+|..+..+.
T Consensus 69 ~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 69 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 344556664 677889999999999999999998764 46 889998 8887766542 5789999998765432
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 147 ~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999987655432 345678999999988854
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.3e-08 Score=81.90 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=71.2
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC-ccEEEec--ccccc-
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-ADAIFMK--WVLTT- 168 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~-~D~v~~~--~vlh~- 168 (254)
+|||+|||+|..+..++.++|+++ +++.|+ |..++.++.+ .++.++.+|.|+..+. .|+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 899999999999999999999999 999999 9888887754 4466777799888654 4988872 22111
Q ss_pred --CC------------------HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 169 --WT------------------DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 169 --~~------------------~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.. -+-...++.++.+.|+|||.+++
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 00 02345788889999999887766
No 125
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-08 Score=78.60 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=80.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
+...+++.++ .+++.+|||||||+|..+.-+++.-. + ++.+++ ++..+.++++ .+|.++.+|-..-+|+
T Consensus 60 ~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 60 MVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3455777774 89999999999999999998888754 5 888888 7777777653 5799999999887665
Q ss_pred -c--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 -A--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 -~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+ |.|+.....-..++ .+.+.|||||+|++...
T Consensus 136 ~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 3 99998777665543 56677999999999665
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=98.88 E-value=7.6e-09 Score=87.36 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------------CCCcEEEeCCCCCCC---CC-c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSI---PA-A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------------~~~i~~~~~d~~~~~---p~-~ 157 (254)
....+||+||||+|..+..+++..+..+ ++.+|+ ++|++.++. .+|++++.+|..+.+ ++ .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3467999999999999999997654456 999999 888887763 278999999998753 22 3
Q ss_pred cEEEeccccc---cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 DAIFMKWVLT---TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 D~v~~~~vlh---~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|+|++...-. ....-...++++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999863210 011122357899999999999998875
No 127
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.88 E-value=1.1e-08 Score=84.80 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=65.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-C-ccEEEeccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-A-ADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-~-~D~v~~~~v 165 (254)
.++.+|||||||||.+++..++.. ..+ ++++|+ |..++.++++ .++.+. ...+.+ . +|+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKK-VVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVVANIL 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSE-EEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEEEES-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCe-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEEECCC
Confidence 456799999999999999887763 235 899999 8777777654 445442 122322 2 499887433
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. +-...+...+.+.|+|||+|+++-..
T Consensus 235 ~-----~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 235 A-----DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp H-----HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred H-----HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 2 45578889999999999999985543
No 128
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.87 E-value=4e-08 Score=80.25 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCeEEEecCcccH----HHHHHHHHcC-----CCCeEEEeec-hHHHhhCCCC--------------------------
Q 025363 97 GVKRLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVAEAPSI-------------------------- 140 (254)
Q Consensus 97 ~~~~vlDvG~G~G~----~~~~l~~~~~-----~~~~~~~~D~-~~~~~~~~~~-------------------------- 140 (254)
...+|.-.||+||. .++.+.+..+ ..+ +++.|+ ..+++.|+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 46799999999997 5555666665 355 888999 8888887641
Q ss_pred ---------CCcEEEeCCCCCCC-C-Cc-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 141 ---------PGVTHIGGDMFKSI-P-AA-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~~-p-~~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
..|.|..+|..++. . .. |+|+|++|+-.++.+.-.+++++++..|+|||.|++..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 35899999999884 3 33 99999999999998888999999999999999999954
No 129
>PLN02366 spermidine synthase
Probab=98.87 E-value=1.2e-08 Score=85.44 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=72.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CC-C-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IP-A-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p-~-~D~ 159 (254)
++..+||+||||.|.++..+++. |...+++++|+ +.+++.+++. +|++++.+|..+. .+ + .|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45789999999999999999866 55433889999 7777776542 6899999997554 32 2 499
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|++-..-...+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9985433222111 1357899999999999998764
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.87 E-value=2.5e-08 Score=89.75 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCCC---CC-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSI---PA- 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~~---p~- 156 (254)
++..+|||||||+|..+..+++ ++. .+ ++.+|+ +++++.++++ +|++++.+|..+.. ++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4567999999999999999997 455 56 999999 9999887761 68999999987742 33
Q ss_pred ccEEEeccccccCCHH---HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ADAIFMKWVLTTWTDD---ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++...-...+.. -..++++++++.|||||.+++.-
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 3999986432221111 12468999999999999988753
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=2.1e-08 Score=88.71 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=80.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC--c
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--A 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~--~ 157 (254)
++..++ ..++.+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+|+++.+|+.+..+. .
T Consensus 242 ~~~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~f 319 (445)
T PRK14904 242 ACLLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQP 319 (445)
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCC
Confidence 334443 56678999999999999999888764 456 999999 8888777653 4689999998765333 3
Q ss_pred cEEEec------ccc-------ccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 158 DAIFMK------WVL-------TTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 158 D~v~~~------~vl-------h~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
|+|++- .++ ..++.++. .++|+++.+.|||||+|++.......
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999862 111 12333332 36899999999999999998876643
No 132
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=2.2e-08 Score=88.14 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCC---CC-
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP- 155 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~---~p- 155 (254)
..++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+.+. .+
T Consensus 234 ~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 33445564 66788999999999999999999987777 999999 8888777654 2478899998764 12
Q ss_pred C-ccEEEecc------cc-------ccCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 A-ADAIFMKW------VL-------TTWTDDE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 ~-~D~v~~~~------vl-------h~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
. .|.|++.- ++ +....++ ..++|+++.+.|||||+|++......
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2 39998422 11 1122222 24799999999999999998876554
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.85 E-value=2e-08 Score=81.18 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A- 156 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~- 156 (254)
..+..+|||||||+|..+..+++..+ +.+ ++.+|. ++..+.++++ ++|+++.+|+.+.++ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 34578999999999999999999875 567 999999 8877776653 689999999977421 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++-. ..+.-..++..+.+.|+|||.+++-+..+
T Consensus 145 fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 145 FDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 39998732 23455688999999999999877755444
No 134
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.85 E-value=4.7e-09 Score=83.04 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=75.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p 155 (254)
....+++.++ .+++.+|||||||+|..+.-++.... ... ++.+|. +...+.++++ .+|.++.+|.....+
T Consensus 60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 3556778885 89999999999999999999998764 335 788898 8888777654 579999999877654
Q ss_pred C-c--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 156 A-A--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 156 ~-~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. + |.|++.......+ ..+.+.|++||+|++.-.
T Consensus 138 ~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 4 3 9999988776443 356777999999998443
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.85 E-value=1e-08 Score=84.84 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=72.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v~ 161 (254)
...+||+||||+|..+..+++..+..+ ++++|+ +.+++.+++. ++++++.+|..+.+ ++ .|+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999999999999999988765556 899998 7787766542 57888888876642 33 39999
Q ss_pred eccccccCCHHH--HHHHHHHHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTDDE--CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~~~--~~~il~~~~~~L~pgG~l~i~ 194 (254)
+......-+... ..++++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865432222222 468899999999999999885
No 136
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.4e-08 Score=79.64 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred HHHHHhcCCchh----HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC------
Q 025363 73 MRKAMSGVSVPF----MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI------ 140 (254)
Q Consensus 73 ~~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~------ 140 (254)
|...|...+..+ +..|+... +..++.+|+|.|.|+|.++..|++. .|..+ ++.+|. ++..+.|+++
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcc
Confidence 334466655543 45577777 4999999999999999999999985 56678 999998 8888777764
Q ss_pred -CCcEEEeCCCCCC-CCC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 141 -PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 141 -~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++|++..+|+.+. .++ .|+|++ ++++ .-+++.++.++|+|||.+++.-+..+
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 5699999999888 343 399887 4543 46899999999999999999776554
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=2.6e-08 Score=88.18 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=79.6
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p 155 (254)
.+...++ ..++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+|+++.+|+.+. ++
T Consensus 241 lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 241 LVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 3445553 5677899999999999999999986 5667 999999 8877766543 4589999998764 23
Q ss_pred C-ccEEEecc------ccc-------cCCHHH-------HHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 156 A-ADAIFMKW------VLT-------TWTDDE-------CKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 156 ~-~D~v~~~~------vlh-------~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. .|+|++.- ++. .++..+ ..++|+++.+.|||||+|+......
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 3 39998732 111 112222 2468999999999999999766544
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.80 E-value=2.5e-08 Score=87.76 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------C-CcEEEeCCCCCC-C-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------P-GVTHIGGDMFKS-I- 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~-~i~~~~~d~~~~-~- 154 (254)
...++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +++++.++++ . ++.+..+|.... .
T Consensus 227 s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 227 AQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 344555664 66788999999999999999999888778 999999 8888776543 1 234466776543 1
Q ss_pred -CC--ccEEEe------ccccccCCH-------HH-------HHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 155 -PA--ADAIFM------KWVLTTWTD-------DE-------CKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 155 -p~--~D~v~~------~~vlh~~~~-------~~-------~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+. .|.|++ ..+++..++ ++ -.++|+++.+.|||||+|++....+..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 22 399985 234544332 11 357999999999999999998877653
No 139
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.79 E-value=1e-08 Score=82.94 Aligned_cols=153 Identities=18% Similarity=0.243 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCccc--HHHHHHHH-HcCCCCeEEEeec-hHHHhhCCCC----CC--cEEEeCCCCCC-
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAG--DCLRMILQ-KHRFICEGINFDL-PEVVAEAPSI----PG--VTHIGGDMFKS- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G--~~~~~l~~-~~~~~~~~~~~D~-~~~~~~~~~~----~~--i~~~~~d~~~~- 153 (254)
....++.+-.-.+-...||||||-- ....++++ ..|+.+ ++.+|. |-++..++.. ++ ..++.+|+.++
T Consensus 56 l~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 56 LRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp HHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred HHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 3344444421225679999999943 34455555 478999 999999 7777766542 44 88999999887
Q ss_pred --CC--C--c--c-----EEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh
Q 025363 154 --IP--A--A--D-----AIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM 219 (254)
Q Consensus 154 --~p--~--~--D-----~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
+. + . | .+++..+||+++| ++...+++.++..|.||++|+|........ +.... ....+...
T Consensus 135 ~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~~--~~~~~~~~ 209 (267)
T PF04672_consen 135 AILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERAE--ALEAVYAQ 209 (267)
T ss_dssp HHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHHH--HHHHHHHH
T ss_pred HHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHHH--HHHHHHHc
Confidence 22 2 1 4 5788999999987 789999999999999999999998875432 11111 11112111
Q ss_pred hccccCceecCHHHHHHHHHhCCCCeee
Q 025363 220 TIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 220 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
. ......||.+|+.++|. ||+.++
T Consensus 210 ~--~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 A--GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp C--CS----B-HHHHHHCCT--TSEE-T
T ss_pred C--CCCceecCHHHHHHHcC--CCccCC
Confidence 1 23456789999999986 777653
No 140
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.77 E-value=3.5e-08 Score=75.88 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=72.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-- 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~-- 156 (254)
.+.+++.++ ..++.+|||||||+|.++..++++ ..+ ++++|. +.+++.+++. ++++++.+|+.+. .+.
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 345667774 777889999999999999999988 456 999998 7777766543 5799999999886 444
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHh--CCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKA--LPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~--L~pgG~l~i~d~ 196 (254)
.|.|+..--.| .+. .++.++.+. +.++|.+++...
T Consensus 78 ~d~vi~n~Py~-~~~----~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 78 PYKVVGNLPYN-IST----PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCEEEECCCcc-cHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence 38877654444 333 344444433 346777766543
No 141
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.75 E-value=7.4e-08 Score=76.58 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=82.0
Q ss_pred cccccccCchHHHHHHHHHhcCCc----hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHH
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSV----PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 134 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~ 134 (254)
.+..+.++|+....|+.+....-. .-.+.|++.+...+....|.|+|||.+.++.. . .-. +.-+|+-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~--~~k-V~SfDL~a~- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---E--RHK-VHSFDLVAV- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---c--ccc-eeeeeeecC-
Confidence 344566788888888776654322 33566777665445678899999999998862 1 123 777886332
Q ss_pred hhCCCCCCcEEEeCCCCCC-CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 135 AEAPSIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 135 ~~~~~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+.+ ++..|+.+. +++. |++++...|-. .+...++++++|+|+|||.|+|.|..
T Consensus 211 -----~~~--V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 211 -----NER--VIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -----CCc--eeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh
Confidence 133 455677664 4432 88776544432 45678999999999999999998864
No 142
>PLN02672 methionine S-methyltransferase
Probab=98.75 E-value=8.3e-08 Score=91.61 Aligned_cols=95 Identities=18% Similarity=0.078 Sum_probs=71.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------------CCcEEEeCCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------------------PGVTHIGGDMFKSI 154 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------------------~~i~~~~~d~~~~~ 154 (254)
+.+|||+|||+|..+..+++++|+.+ ++++|+ +.+++.++.+ +||+|+.+|+++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999999999888 999999 8887766322 37999999999875
Q ss_pred CC----ccEEEec--ccccc----CC------------------------------HHHHHHHHHHHHHhCCCCCEEEE
Q 025363 155 PA----ADAIFMK--WVLTT----WT------------------------------DDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 155 p~----~D~v~~~--~vlh~----~~------------------------------~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+. .|+|+.+ ++... ++ -+-..++++++.+.|+|||.+++
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 32 3888862 22110 00 01125788888899999998775
No 143
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=6e-08 Score=85.54 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=82.0
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC---
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI--- 154 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~--- 154 (254)
..+...++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+|+++.+|+.+..
T Consensus 242 ~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 242 QLVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 33445553 66788999999999999999999864 457 999998 8888776653 46899999986542
Q ss_pred ---CC-ccEEEec------cccccCCH-------HH-------HHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 155 ---PA-ADAIFMK------WVLTTWTD-------DE-------CKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 155 ---p~-~D~v~~~------~vlh~~~~-------~~-------~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++ .|.|++. .+++.-++ ++ -.++|+++.+.|||||+|+.....+.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12 3999862 24443222 22 35889999999999999998876554
No 144
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=5.9e-08 Score=85.32 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=86.4
Q ss_pred HHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC------CCcE
Q 025363 73 MRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI------PGVT 144 (254)
Q Consensus 73 ~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~------~~i~ 144 (254)
|..+...........+...++ ..++.+|||+|||+|..+..+++.. +..+ ++.+|+ +.+++.++++ .+++
T Consensus 214 ~~~G~~~~Qd~~s~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~ 291 (431)
T PRK14903 214 IKDGLATVQGESSQIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIE 291 (431)
T ss_pred HHCCeEEEECHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEE
Confidence 444333333333333444553 6678899999999999999999986 3567 999999 8888777653 4588
Q ss_pred EEeCCCCCCC---CC-ccEEEec------cccc-------cCCHHH-------HHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 145 HIGGDMFKSI---PA-ADAIFMK------WVLT-------TWTDDE-------CKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 145 ~~~~d~~~~~---p~-~D~v~~~------~vlh-------~~~~~~-------~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
++.+|..+.. ++ .|.|++. .++. .++.++ -.++|.++.+.|||||+|+.....+..
T Consensus 292 ~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 292 IKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred EEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 9999986531 23 3998861 1222 122221 257899999999999999988776653
Q ss_pred C
Q 025363 201 D 201 (254)
Q Consensus 201 ~ 201 (254)
.
T Consensus 372 e 372 (431)
T PRK14903 372 E 372 (431)
T ss_pred h
Confidence 3
No 145
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.73 E-value=1.5e-07 Score=70.10 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=90.1
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCC-CCCcEEEeCCCCCC---CC-
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPS-IPGVTHIGGDMFKS---IP- 155 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~-~~~i~~~~~d~~~~---~p- 155 (254)
..++.+....+ +..+.-|||+|.|||.++.+++++. ++.. .+.++. ++......+ .+.++++.||.+.. ..
T Consensus 35 ~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 35 ILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 34555666664 8889999999999999999999984 4445 677777 776655443 47888999999875 22
Q ss_pred --C--ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 156 --A--ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 156 --~--~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. .|.|++.--+-.++.....++|+++...|++||.++-....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 29999999888899999999999999999999998876654
No 146
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.71 E-value=4e-08 Score=79.45 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=76.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
+..|+..++ ..++.+|||.|.|+|.++..|++.. |..+ +.-+|. ++..+.++++ .+|++...|+.+. +
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 344677774 8999999999999999999999864 7777 899998 7777776653 6799999999765 4
Q ss_pred C----C-ccEEEeccccccCCHHHHHHHHHHHHHhC-CCCCEEEEEcccc
Q 025363 155 P----A-ADAIFMKWVLTTWTDDECKLIMENCYKAL-PAGGKLIACEPVL 198 (254)
Q Consensus 155 p----~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L-~pgG~l~i~d~~~ 198 (254)
+ . .|.|++ ++++. -.++..+.++| +|||++++.-+.+
T Consensus 107 ~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCH
Confidence 2 2 398887 44433 47789999999 8999999865543
No 147
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.70 E-value=1e-07 Score=78.61 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-C--CCccEEEec
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-I--PAADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~--p~~D~v~~~ 163 (254)
..++.+|||+|||+|..+..+++...+ .. ++++|. +.+++.++++ .+|.+...|.... . +..|+|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 567889999999999999999988753 46 999999 8887766543 4688888887543 1 224998862
Q ss_pred c------ccc-------cCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 164 W------VLT-------TWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 164 ~------vlh-------~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
- ++. .|++++. .++|+++.+.|||||+|+.....+..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 111 2333333 46999999999999999987766543
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=98.66 E-value=1.6e-07 Score=74.83 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCeEEEecCcccHHHHHHHHHc---CCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC-CCC-ccEEEeccccccCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT 170 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~---~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~ 170 (254)
..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.++.. .++.++.+|+... .+. .|+|+++=-++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 5799999999999999999875 3557 999999 8888888765 6799999999765 333 39999865444221
Q ss_pred --H--------HHHHHHHHHHHHhCCCCCEEEE
Q 025363 171 --D--------DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 171 --~--------~~~~~il~~~~~~L~pgG~l~i 193 (254)
+ .-...+++++.++++||+ +++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 1 124568889998666665 444
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.66 E-value=3.8e-08 Score=77.26 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=67.5
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC------CCCcEEEeCCCCCC----CCC-c-cEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA-A-DAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~------~~~i~~~~~d~~~~----~p~-~-D~v~~~~v 165 (254)
..+||||||.|.++..+++.+|+.. ++++|. ...+..+.. ..++.++.+|+... ++. . |-|++.+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3889999999999999999999999 999998 655554432 27899999998873 343 3 66555221
Q ss_pred cccCCHH-------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDD-------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
== |+.. -...+|+.++++|+|||.|.+..
T Consensus 98 DP-WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DP-WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 00 1110 12479999999999999998854
No 150
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.62 E-value=8.6e-08 Score=81.06 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=70.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------------CCcEEEeCCCCCC-C----
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------------PGVTHIGGDMFKS-I---- 154 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------------~~i~~~~~d~~~~-~---- 154 (254)
++.+|||+|||.|.-+...... ++...+++|+ +..++.++++ -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 6789999999998877777666 3333799998 6666666542 1356788888765 1
Q ss_pred -CC--c-cEEEecccccc-C-CHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 155 -PA--A-DAIFMKWVLTT-W-TDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 155 -p~--~-D~v~~~~vlh~-~-~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+. . |+|-+...+|. + +.+.+..+|+++.+.|+|||+++..-
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22 3 99999999996 3 45678889999999999999998753
No 151
>PLN02476 O-methyltransferase
Probab=98.57 E-value=5.2e-07 Score=74.16 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC--------C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP--------A- 156 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p--------~- 156 (254)
..+.++|||||+++|..+..+++..| +.+ ++.+|. ++..+.+++. ++|+++.||+.+.++ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45578999999999999999999876 556 888998 7777666543 689999999877532 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.|+|++-. +..+-...++.+.+.|+|||.+++-+..+.
T Consensus 195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 39988733 345677899999999999999887555443
No 152
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.57 E-value=2.2e-07 Score=73.23 Aligned_cols=112 Identities=19% Similarity=0.337 Sum_probs=69.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------------~~~i~~~~~ 148 (254)
...+++.+. ..+...++|||||.|......+..++--+ ++++++ +...+.+.. ..++++..+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344566663 77888999999999999998887776545 888887 654433321 156889999
Q ss_pred CCCCC-C-----CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 149 DMFKS-I-----PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 149 d~~~~-~-----p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
||.+. . .++|+|++++... + ++...-|.+....||||.+++......+..
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred CccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 99875 2 3469999988764 3 455566688888999999988877666543
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=1.6e-07 Score=72.42 Aligned_cols=101 Identities=16% Similarity=0.051 Sum_probs=66.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCC-----C-C-cc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSI-----P-A-AD 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~-----p-~-~D 158 (254)
...+.+|||+|||+|..++.+++..+..+ ++..|.+++++..+. ..++.+...|..++. + . .|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 44578999999999999999998866667 899998556554432 167889998887642 2 2 39
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+|+.+.++++ ++....+++.+.++|+|+|.+++.....
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999985 4677899999999999999877765443
No 154
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.48 E-value=7.6e-08 Score=75.95 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=75.5
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---------Cc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------AA 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------~~ 157 (254)
.+..+|||||+++|..+..+++..| +.+ ++.+|. |+..+.+++. .+|+++.+|..+.++ ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3478999999999999999999987 567 999998 7777766543 689999999976422 13
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|+|++-. ...+-...++.+.+.|+|||.+++-+..+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence 9999844 334556889999999999999888665543
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.47 E-value=3.9e-07 Score=74.82 Aligned_cols=108 Identities=21% Similarity=0.305 Sum_probs=78.3
Q ss_pred hhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------CCcEEEeCC
Q 025363 83 PFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------------PGVTHIGGD 149 (254)
Q Consensus 83 ~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------~~i~~~~~d 149 (254)
++-..++..| .++...++|+|||-|.-+...-++ ++...+++|+ +--+.+++.+ -.+.|+++|
T Consensus 105 wIKs~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D 180 (389)
T KOG1975|consen 105 WIKSVLINLY--TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD 180 (389)
T ss_pred HHHHHHHHHH--hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence 3334455555 466778999999999988877766 3323789999 4445556543 136788888
Q ss_pred CCCC-----C----CCccEEEecccccc-CC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 150 MFKS-----I----PAADAIFMKWVLTT-WT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 150 ~~~~-----~----p~~D~v~~~~vlh~-~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-+.. + |..|+|-+..++|. |. .+.+.-+|+++.+.|||||.++-.
T Consensus 181 c~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 181 CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred cchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 8764 2 12499999999995 44 567889999999999999988753
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.47 E-value=4.6e-07 Score=71.69 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEe-CCCCCCCC----C-ccE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIG-GDMFKSIP----A-ADA 159 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~-~d~~~~~p----~-~D~ 159 (254)
.++.++|||||.+.|..+..++...| +.+ .+-+|. |+..+.++++ ++|.+.. +|..+.+. + .|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 45789999999999999999999999 777 899999 8888888764 6788888 57766532 2 399
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|++-. ...+-.+.|..+.+.|+|||.+++-+...+
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 99833 445567899999999999998777555444
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.46 E-value=3e-07 Score=71.55 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=74.3
Q ss_pred hHHHHHhhcCCCCC--CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCC--Cc
Q 025363 84 FMTSVLEGYNGFKG--VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP--AA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p--~~ 157 (254)
..+..++.++ .++ ..-|||||||+|-.+..+.+.. .. .+++|+ |+|++.+.+. -.-.++.+||-+.+| .+
T Consensus 36 m~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpG 111 (270)
T KOG1541|consen 36 MAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPG 111 (270)
T ss_pred HHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCC
Confidence 4445555553 544 6789999999999998877663 45 799999 9999998763 113477788887643 33
Q ss_pred --cEEEeccccc---------cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 158 --DAIFMKWVLT---------TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 158 --D~v~~~~vlh---------~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|-+|.-..+. |.+......++..++.+|++|++-++.
T Consensus 112 tFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 112 TFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 7666533321 223344566788899999999997763
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=70.50 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=67.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCC----CCCC--Cc--cEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMF----KSIP--AA--DAI 160 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~----~~~p--~~--D~v 160 (254)
.+..|||+|||+|..+..++...|+.+ ++++|. +..+..+.++ +++..+..++. .+-+ .+ |++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 345799999999999999999999999 999998 7676666554 77887754444 3322 23 777
Q ss_pred Eec--ccccc-C----------C-----------HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMK--WVLTT-W----------T-----------DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~--~vlh~-~----------~-----------~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+++ ++.++ + . .+....++.-+.|.|+|||.+.+.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 762 34332 0 0 012334677788999999988773
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.44 E-value=1.2e-06 Score=71.86 Aligned_cols=92 Identities=12% Similarity=0.208 Sum_probs=64.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~ 157 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++.+ . ++++|. +.+++.++.. ++++++.+|+.+. .+..
T Consensus 17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~ 92 (253)
T TIGR00755 17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDF 92 (253)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHc
Confidence 4566777664 77788999999999999999999975 4 888888 7777666542 6799999999876 4433
Q ss_pred c--EEEeccccccCCHHHHHHHHHHHHH
Q 025363 158 D--AIFMKWVLTTWTDDECKLIMENCYK 183 (254)
Q Consensus 158 D--~v~~~~vlh~~~~~~~~~il~~~~~ 183 (254)
| .+++++.-++++ ..++.++..
T Consensus 93 d~~~~vvsNlPy~i~----~~il~~ll~ 116 (253)
T TIGR00755 93 PKQLKVVSNLPYNIS----SPLIFKLLE 116 (253)
T ss_pred CCcceEEEcCChhhH----HHHHHHHhc
Confidence 4 333444433343 344555544
No 160
>PLN02823 spermine synthase
Probab=98.44 E-value=6.6e-07 Score=75.85 Aligned_cols=96 Identities=20% Similarity=0.166 Sum_probs=71.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCCC---C-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIP---A-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~p---~-~D~v~ 161 (254)
..++||.||+|.|..+..+++..+..+ ++++|+ +.+++.+++. +|++++.+|..+.+. + .|+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 467999999999999999998665556 999999 8888877642 689999999887632 2 39999
Q ss_pred eccccccCCH--H---HHHHHHH-HHHHhCCCCCEEEEE
Q 025363 162 MKWVLTTWTD--D---ECKLIME-NCYKALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~--~---~~~~il~-~~~~~L~pgG~l~i~ 194 (254)
+-. ..-+.. . -..++++ .+++.|+|||.+++.
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 852 111100 0 1246787 899999999998764
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.41 E-value=1.5e-06 Score=73.01 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=91.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEe----CCCCCCC--CC--ccE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIG----GDMFKSI--PA--ADA 159 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~----~d~~~~~--p~--~D~ 159 (254)
...++||||||+|.....++.+.++++ ++++|+ +..++.++.. .+|++.. .++++.+ +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 468999999999999888888888889 999999 8777777643 3677653 2334332 22 399
Q ss_pred EEeccccccCCHHH---HHHHHHHH----------------HHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh
Q 025363 160 IFMKWVLTTWTDDE---CKLIMENC----------------YKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT 220 (254)
Q Consensus 160 v~~~~vlh~~~~~~---~~~il~~~----------------~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
|+++=-+|.-..+. ...-.+++ .+++.+||.+-++..+..+... ......+...|
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~----~~~~~gwftsm-- 266 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKA----FAKQVLWFTSL-- 266 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHH----HHhhCcEEEEE--
Confidence 99988877533221 11112222 2445578887776666554310 00001111111
Q ss_pred ccccCceecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 221 IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 221 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
-|+.-+...+.+.|++.|.+.+.+..+
T Consensus 267 ----v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 267 ----VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred ----eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 145568999999999999977766553
No 162
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.41 E-value=1.2e-06 Score=73.74 Aligned_cols=106 Identities=10% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC----CCCeEEEeec-hHHHhhCCC------CCCcEE--EeCCCC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR----FICEGINFDL-PEVVAEAPS------IPGVTH--IGGDMF 151 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~~D~-~~~~~~~~~------~~~i~~--~~~d~~ 151 (254)
...|++.+ .+...|+|+|||+|.=+..|+++.. ..+ .+.+|+ .+.++.+.. .+.+++ +.+|+.
T Consensus 67 ~~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 44555544 3566899999999998888777763 356 789998 566655432 255666 778886
Q ss_pred CC---CC-----Cc-cEE-EeccccccCCHHHHHHHHHHHHH-hCCCCCEEEEE
Q 025363 152 KS---IP-----AA-DAI-FMKWVLTTWTDDECKLIMENCYK-ALPAGGKLIAC 194 (254)
Q Consensus 152 ~~---~p-----~~-D~v-~~~~vlh~~~~~~~~~il~~~~~-~L~pgG~l~i~ 194 (254)
+. ++ .. .++ ++...+.+++++++..+|+++++ .|+||+.|+|.
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 64 22 12 454 45679999999999999999999 99999998884
No 163
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=72.60 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=75.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCC---CC-ccEEEe
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSI---PA-ADAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~---p~-~D~v~~ 162 (254)
.++||-||+|.|.++.++++..+-.+ ++.+|+ |.+++.+++. +|++.+..|..+.+ +. .|+|++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 36999999999999999999988667 999999 8898887753 78999999988763 33 499998
Q ss_pred ccccccCCHH---HHHHHHHHHHHhCCCCCEEEEE
Q 025363 163 KWVLTTWTDD---ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh~~~~~---~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-..=.. .+. -...+++.|+++|+|+|.++..
T Consensus 156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 443221 110 0258999999999999999886
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=70.16 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=68.6
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC-c-cEEEeccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA-A-DAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~-~-D~v~~~~v 165 (254)
..+||||||.|.+...+++++|+.. +++++. ...+..+... +++.++++|+.+- +++ . |-|.+..-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999 999998 5554444321 4889999998664 344 2 55554221
Q ss_pred cccCCHHH-------HHHHHHHHHHhCCCCCEEEEEc
Q 025363 166 LTTWTDDE-------CKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 166 lh~~~~~~-------~~~il~~~~~~L~pgG~l~i~d 195 (254)
= =|+... ....|+.+.+.|+|||.|.+..
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 0 022110 2368999999999999998854
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=1.7e-06 Score=71.67 Aligned_cols=76 Identities=11% Similarity=0.212 Sum_probs=58.7
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---CCcEEEeCCCCCC-CCCc-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IPAA- 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~~i~~~~~d~~~~-~p~~- 157 (254)
+.+.+++.++ ..++.+|||||||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+. .+..
T Consensus 30 i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 30 ILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC
Confidence 3455666664 67788999999999999999999975 6 999998 8888877653 5899999999875 3332
Q ss_pred -cEEEec
Q 025363 158 -DAIFMK 163 (254)
Q Consensus 158 -D~v~~~ 163 (254)
|.|+.+
T Consensus 106 ~~~vv~N 112 (272)
T PRK00274 106 PLKVVAN 112 (272)
T ss_pred cceEEEe
Confidence 555543
No 166
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.38 E-value=1.2e-06 Score=68.82 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=65.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---C-ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---A-ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---~-~D~v~~~~ 164 (254)
.++.+|||+|||+|.++..++.+.. .+ ++.+|. +..++.++++ .+++++.+|+++.++ . .|+|++.=
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 3467999999999999997666643 46 999998 7777665543 478999999876532 2 49999865
Q ss_pred ccccCCHHHHHHHHHHHHH--hCCCCCEEEEEc
Q 025363 165 VLTTWTDDECKLIMENCYK--ALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~d 195 (254)
-.+.- -..++++.+.+ .|+|++.+++..
T Consensus 130 Py~~g---~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRKG---LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCC---hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 54321 12345555555 478988776653
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.36 E-value=1.4e-06 Score=71.68 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=62.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCCC-CCCc
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~~-~p~~ 157 (254)
+.+.+++..+ ..++.+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++..
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 4566777664 6678899999999999999999984 46 899998 7777766542 6799999999875 5555
Q ss_pred cEEEeccccc
Q 025363 158 DAIFMKWVLT 167 (254)
Q Consensus 158 D~v~~~~vlh 167 (254)
|.|+++--.+
T Consensus 93 d~Vv~NlPy~ 102 (258)
T PRK14896 93 NKVVSNLPYQ 102 (258)
T ss_pred eEEEEcCCcc
Confidence 8887755543
No 168
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.35 E-value=1.8e-06 Score=76.48 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=70.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC--
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI-- 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~-- 154 (254)
+.+.+++.++ ..++.+|||+|||+|.++..+++.. .+ ++++|. +++++.++++ .+++|+.+|+.+.+
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3445555553 5567899999999999999999885 46 999999 8888877653 46999999987542
Q ss_pred ---C-C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 155 ---P-A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 155 ---p-~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+ . .|+|++.--- .....+++.+.+ ++|++.+++
T Consensus 361 ~~~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 361 QPWALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEE
Confidence 1 2 3998873221 122345566655 588877666
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.34 E-value=4.6e-07 Score=79.71 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred cccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCC---CCCCeEEEecCcccHHHHHHHHHc----CCCCeEEEeec-
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGF---KGVKRLVDVGGSAGDCLRMILQKH----RFICEGINFDL- 130 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~----~~~~~~~~~D~- 130 (254)
.|+.+++|+..-..|.+++.. .+.+..... .....|+|||||+|.++...+++. ...+ +.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 356667777766667666543 222222111 135789999999999998777664 2345 888886
Q ss_pred hHHHhhC----CC---CCCcEEEeCCCCCC-CCC-ccEEEeccccccCCH-HHHHHHHHHHHHhCCCCCEEE
Q 025363 131 PEVVAEA----PS---IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD-DECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 131 ~~~~~~~----~~---~~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~~-~~~~~il~~~~~~L~pgG~l~ 192 (254)
+...... +. .++|+++.+|+.+- .|+ +|+|+.-.. -.+.+ +-..+.|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433221 11 17899999999887 676 499986332 11111 334466888899999998654
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.1e-06 Score=67.92 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=72.4
Q ss_pred HHHhhcC-CCCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCC----------------CCcEEE
Q 025363 87 SVLEGYN-GFKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSI----------------PGVTHI 146 (254)
Q Consensus 87 ~i~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~----------------~~i~~~ 146 (254)
.+++.++ ++.++.+.||||+|+|.++..++... ++.. .+++|. |++++-++++ .++.++
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 3444442 57889999999999999999888653 3333 377887 8877766542 568889
Q ss_pred eCCCCCCCCC---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 147 GGDMFKSIPA---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 147 ~~d~~~~~p~---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.||-..-.++ .|.|.+... +.++.+++-..|+|||+++|.
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 9998776443 399988633 245677888889999999984
No 171
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.33 E-value=1.1e-06 Score=82.05 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC---CC-ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI---PA-ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~---p~-~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++. ...+ ++.+|. +.+++.++++ .+++++.+|+++.+ +. .|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 4689999999999999999986 2336 999999 8888877653 37899999987753 33 3999983
Q ss_pred cc--c------ccCC-HHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WV--L------TTWT-DDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~v--l------h~~~-~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-- - ..+. ...-..+++.+.+.|+|||.|++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11 0 0010 133467889999999999998774
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.33 E-value=1.4e-06 Score=70.64 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---------C-
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---------A- 156 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---------~- 156 (254)
.+.++|||||+++|..+..+++..| +.+ ++.+|. ++..+.+++. ++|+++.||+.+.++ +
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3478999999999999999999875 667 888998 7766665542 789999999877532 2
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.|+|++-. ....-...++.+.+.|+|||.+++-+..+
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 39988843 34556788999999999999977744443
No 173
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.32 E-value=2.7e-06 Score=70.43 Aligned_cols=112 Identities=17% Similarity=0.318 Sum_probs=77.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----CCcEE--EeCCCCC---CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----PGVTH--IGGDMFK---SI 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----~~i~~--~~~d~~~---~~ 154 (254)
..++....+.|. ..+|||+|+|+|..+-++.+.++....++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 444554454343 458999999999999888888885544788998 7777655432 11110 0111221 12
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+..|+|+++++|..+++++..++++++.+.+.+ .|+++|+-.+
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 334999999999999888888999999888876 9999997554
No 174
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.30 E-value=2.8e-06 Score=73.82 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=69.7
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCC------CC-ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSI------PA-ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~------p~-~D~ 159 (254)
.++.+|||+|||+|.++...+.. ...+ ++.+|. +.+++.++++ .+++++.+|+++.+ .. .|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34689999999999998876643 3346 999999 8888776653 26889999998752 12 399
Q ss_pred EEeccccccCCH-------HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 160 IFMKWVLTTWTD-------DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 160 v~~~~vlh~~~~-------~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|++.--...-+. ..-..+++.+.+.|+|||.|+.+..
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998522111111 1234566778999999999988553
No 175
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.29 E-value=1.3e-05 Score=62.87 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCC-----ccEEEeccccccCCH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-----ADAIFMKWVLTTWTD 171 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~-----~D~v~~~~vlh~~~~ 171 (254)
..++|||||=+...... .++-.. ++.+|+-+. .+. +...||++- +|. .|+|.++.||..+++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fd-vt~IDLns~------~~~--I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFD-VTRIDLNSQ------HPG--ILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCcee-eEEeecCCC------CCC--ceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 37999999864443332 234445 788887321 122 456788885 652 299999999999984
Q ss_pred -HHHHHHHHHHHHhCCCCCE-----EEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCe
Q 025363 172 -DECKLIMENCYKALPAGGK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPH 245 (254)
Q Consensus 172 -~~~~~il~~~~~~L~pgG~-----l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 245 (254)
.+.-+.++++++.|+|+|. |+++-+ .+ |..+.+..+.+.|.++++.-||..
T Consensus 120 p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~--------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LP--------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcceEEEEeC---ch--------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 5677999999999999999 766532 11 344667789999999999999998
Q ss_pred eeEEE
Q 025363 246 LRLYR 250 (254)
Q Consensus 246 ~~~~~ 250 (254)
++...
T Consensus 177 ~~~~~ 181 (219)
T PF11968_consen 177 VKYKK 181 (219)
T ss_pred EEEEe
Confidence 87643
No 176
>PRK04148 hypothetical protein; Provisional
Probab=98.27 E-value=9.1e-06 Score=59.23 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccH-HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCC----CccE
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADA 159 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p----~~D~ 159 (254)
+.+.+.++ -..+.+|+|||||+|. .+..|.+. +.. ++++|. |..++.+++ ..++++..|.|++-+ ++|+
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCE
Confidence 34555553 3446899999999996 77777755 456 999999 887777765 468899999999833 2499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 160 IFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 160 v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
|.... ++.+...-+-++++.. |.-++|.
T Consensus 81 iysir-----pp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 81 IYSIR-----PPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred EEEeC-----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 98754 4566666666777665 4445553
No 177
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.26 E-value=6.4e-07 Score=72.68 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC---------C-------------------------C
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS---------I-------------------------P 141 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~---------~-------------------------~ 141 (254)
++.++||||+|+-.+ .++.+.+..+.++..|. +.-.+..++ . .
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467999999998554 34444444433666776 433321110 0 1
Q ss_pred CcE-EEeCCCCCC--C------CC-ccEEEeccccccCC--HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhh
Q 025363 142 GVT-HIGGDMFKS--I------PA-ADAIFMKWVLTTWT--DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTR 209 (254)
Q Consensus 142 ~i~-~~~~d~~~~--~------p~-~D~v~~~~vlh~~~--~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~ 209 (254)
.|+ ++..|..++ + |. +|+|++..+|...+ .++-.+.++++.++|||||.|++....-...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-------- 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-------- 205 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------
Confidence 243 566777765 2 33 59999999887533 4567899999999999999999977643210
Q ss_pred hcccchHhhhhccccCce-----ecCHHHHHHHHHhCCCCeeeEE
Q 025363 210 ALLEGDIFVMTIYRAKGN-----HRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~-----~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
+ ..+++ ..+.+.+++.|+++||.+.+..
T Consensus 206 --Y----------~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 206 --Y----------MVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp --E----------EETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred --E----------EECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 0 11222 2488999999999999988776
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=98.24 E-value=6.2e-06 Score=67.35 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=67.6
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCCCCC-ccEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKSIPA-ADAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~~p~-~D~v~~ 162 (254)
.+..++||=||||-|..++++++. |. + ++.+|+ ++|++.+++. +|++++.. +.+...+ .|+||+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence 345789999999999999999987 43 7 999999 8888877762 78888762 2221223 499998
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-... + ....+.++++|+|||.++..
T Consensus 146 Ds~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 LQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred cCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 6431 1 36779999999999998884
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.21 E-value=7.2e-06 Score=68.45 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=65.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------CCCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------~~~i~~~~~d~~~~-~ 154 (254)
+.+.+++..+ ..++.+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. .
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 4556777664 7778899999999999999999874 45 899998 777776553 25799999999875 4
Q ss_pred CCccEEEeccccccCCHHHHHHHH
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIM 178 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il 178 (254)
+..|+|+.+ .-.+++.+-..++|
T Consensus 100 ~~~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 100 PYFDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cccCEEEec-CCcccCcHHHHHHH
Confidence 545877753 33445544444444
No 180
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.18 E-value=1.9e-05 Score=62.26 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC---CCCc--cEE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS---IPAA--DAI 160 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~---~p~~--D~v 160 (254)
.+.+.+|||...|-|.+++..+++.. .. ++-++- |.+++.+.-+ .+|+.+.||..+- +++. |+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 35688999999999999999998842 14 666665 8888777654 4689999999875 4443 887
Q ss_pred Eec-cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHH
Q 025363 161 FMK-WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGF 239 (254)
Q Consensus 161 ~~~-~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 239 (254)
+-- --|..-..=...++-++++|+|||||+|+=.-.. +.. .....| -+....+.|+
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~---Pg~------ryrG~d--------------~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN---PGK------RYRGLD--------------LPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC---CCc------ccccCC--------------hhHHHHHHHH
Confidence 631 0111111224568899999999999998642211 110 001111 2456788999
Q ss_pred hCCCCeeeEEE
Q 025363 240 FAGFPHLRLYR 250 (254)
Q Consensus 240 ~aGf~~~~~~~ 250 (254)
++||.+++...
T Consensus 267 ~vGF~~v~~~~ 277 (287)
T COG2521 267 RVGFEVVKKVR 277 (287)
T ss_pred hcCceeeeeeh
Confidence 99999776543
No 181
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=1.2e-05 Score=64.44 Aligned_cols=136 Identities=20% Similarity=0.164 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHh-hCCCCCCcE-EEeCCCCCC----C-CC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVA-EAPSIPGVT-HIGGDMFKS----I-PA 156 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~-~~~~~~~i~-~~~~d~~~~----~-p~ 156 (254)
...+++.++...++.++||+|||+|.++..+++. +..+ ++++|. +.++. ..+..+++. +...|+... + ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 4456666542246779999999999999999987 3345 999999 64554 455556654 333343311 1 11
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE-EccccCCCCCChhhhhhcccchHhhhhccccCcee----
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA-CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNH---- 228 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 228 (254)
.|+++++.. .+|..+.++|+| |.+++ ..+-+.- .+. .. ..+|-.
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~---~~~--------~~------~~~giv~~~~ 192 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEA---GRE--------KK------NKKGVVRDKE 192 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhh---cHh--------hc------CcCCeecCHH
Confidence 266555432 358899999999 65553 3222111 110 00 011222
Q ss_pred ---cCHHHHHHHHHhCCCCeeeEEE
Q 025363 229 ---RTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 229 ---~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
.-.+++...+.+.||++..+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 193 AIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 2456777888889998877654
No 182
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.15 E-value=7.5e-06 Score=67.77 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=69.7
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CCCc
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~ 157 (254)
+.+++....| .++-|||||||+|.++...+++. ++.+.+++..+|.+-+++. +||.++.|.+.+- +|+.
T Consensus 167 ~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 167 RAILENHSDF-QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHHHhccccc-CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 4455433223 35789999999999998777763 3327888877777666542 7999999999886 8885
Q ss_pred -cEEEe---ccccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 158 -DAIFM---KWVLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 158 -D~v~~---~~vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
|++|. ...|. +..-.+. --..++.|||.|+++
T Consensus 244 ~DviISEPMG~mL~--NERMLEs-Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 244 VDVIISEPMGYMLV--NERMLES-YLHARKWLKPNGKMF 279 (517)
T ss_pred ccEEEeccchhhhh--hHHHHHH-HHHHHhhcCCCCccc
Confidence 99986 33332 2333333 335679999999876
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.13 E-value=1.8e-06 Score=70.27 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p~--~D~ 159 (254)
+...+||=||+|.|..+..+++..+..+ ++++|+ |.+++.+++. +|++++.+|.... .++ .|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3578999999999999999987665556 999999 8888877642 6899999998765 334 499
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++-..--..+.. -..++++.++++|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9873322111111 13589999999999999988855
No 184
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.03 E-value=2.9e-06 Score=74.00 Aligned_cols=97 Identities=21% Similarity=0.375 Sum_probs=64.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEe---ec-hHHHhhCCCCCCcEEEeCCCCC---CCCC-c-cEEEecccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINF---DL-PEVVAEAPSIPGVTHIGGDMFK---SIPA-A-DAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~---D~-~~~~~~~~~~~~i~~~~~d~~~---~~p~-~-D~v~~~~vlh~ 168 (254)
-..+||||||+|.++..++++. +. ..-+ |. +..+.-+.++ .|.-.-+-+.+ ++|. + |+|.++.++..
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r~--V~-t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLERN--VT-TMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred eEEEEeccceeehhHHHHhhCC--ce-EEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 4678999999999999999984 22 2111 22 2233333322 13222222212 2454 3 99999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
|...+ .-+|-++-|+|+|||+++..-+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98765 4689999999999999998766544
No 185
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=9e-06 Score=65.97 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=76.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCC--ccEE
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAI 160 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~--~D~v 160 (254)
..++++.. ..+..++|+|||.|.+... +|.+. .++.|+ ...+..++..+.......|+... .++ .|..
T Consensus 36 v~qfl~~~---~~gsv~~d~gCGngky~~~----~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 36 VRQFLDSQ---PTGSVGLDVGCGNGKYLGV----NPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred HHHHHhcc---CCcceeeecccCCcccCcC----CCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc
Confidence 34444443 3477899999999988753 47777 899999 66666665544436777888876 333 3999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMKWVLTTWTDD-ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~~vlh~~~~~-~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+...++||++.. ....+++++.+.++|||..+|.
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999998864 4668999999999999987764
No 186
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.01 E-value=1.7e-05 Score=67.16 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=51.0
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCC--C-C-ccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSI--P-A-ADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~--p-~-~D~v~~~ 163 (254)
++.+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ .+++|+.+|+.+.. . . .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999985 456 999999 8888877643 57999999997642 1 2 3998875
No 187
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.4e-05 Score=61.13 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=52.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCccEEEecccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~D~v~~~~vl 166 (254)
.+.+|+|+|||||.++...+-..+. + ++++|+ |+.++.++++ .+|.|...|..+.-...|.++++=-+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4678999999999999987766443 5 899999 8888887765 57999999986654444777775443
No 188
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.00 E-value=3.2e-05 Score=61.06 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred EEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---ccEEEeccccccC
Q 025363 101 LVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMKWVLTTW 169 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---~D~v~~~~vlh~~ 169 (254)
|.||||.+|.+...|++....-+ +++.|+ +.-++.+++. ++|++..+|-++.++. .|+|++.. +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----M 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----M 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----C
Confidence 68999999999999999977666 999998 7777766543 7899999998887443 47777644 3
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
......+||++....++...+|++.-. .....++.+|.+.||.+++-.
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 456677888888887766556555110 134567889999999987654
Q ss_pred E
Q 025363 250 R 250 (254)
Q Consensus 250 ~ 250 (254)
-
T Consensus 124 l 124 (205)
T PF04816_consen 124 L 124 (205)
T ss_dssp E
T ss_pred E
Confidence 3
No 189
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=0.0001 Score=56.50 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhh-----------CCCC--CCcEEEeCCCCCC-CCCc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAE-----------APSI--PGVTHIGGDMFKS-IPAA 157 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~-----------~~~~--~~i~~~~~d~~~~-~p~~ 157 (254)
+++++.+|+|+=.|.|.++.-|.... +.+ +.++.. .+...- +++. .+++.+..+.... .|+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQK 122 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhc-CCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCc
Confidence 57899999999999999999887764 223 333332 222111 1111 3344444443333 3333
Q ss_pred -cEEEecccccc-----CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCH
Q 025363 158 -DAIFMKWVLTT-----WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTE 231 (254)
Q Consensus 158 -D~v~~~~vlh~-----~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 231 (254)
|+++....-|+ +....+.++-+.++++|||||.+++.|........ .. +- ..-..++.
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~-~~--------dt-------~~~~ri~~ 186 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG-LS--------DT-------ITLHRIDP 186 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC-hh--------hh-------hhhcccCh
Confidence 77776443332 33567889999999999999999999987643211 10 00 00122466
Q ss_pred HHHHHHHHhCCCCeeeEE
Q 025363 232 QEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~~ 249 (254)
.-..+..+++||+..--.
T Consensus 187 a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 187 AVVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHHhhcceeeeee
Confidence 778888999999865443
No 190
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.97 E-value=2.2e-05 Score=63.24 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=62.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-C
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-I 154 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~ 154 (254)
+.++|++.-+ .++...|||||.|||.++..++++ +.+ ++++++ |.|++..+++ ....+..+|++.. .
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCe-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4677777775 889999999999999999999999 455 888988 8888776543 5789999999987 6
Q ss_pred CCccEEEe
Q 025363 155 PAADAIFM 162 (254)
Q Consensus 155 p~~D~v~~ 162 (254)
|..|.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 77687776
No 191
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=5.3e-06 Score=69.03 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=70.9
Q ss_pred HHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhh----CCCC---CCcEEEeCCCCCC---CCC
Q 025363 87 SVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAE----APSI---PGVTHIGGDMFKS---IPA 156 (254)
Q Consensus 87 ~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~----~~~~---~~i~~~~~d~~~~---~p~ 156 (254)
.+-...+.++ .++|||||.|.|.-+.++-.-+|+++.++.+.....+.. ..++ ........|+..+ +|.
T Consensus 104 ~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 3334444444 456999999999999998889998874566665222221 1111 2233344555444 455
Q ss_pred ccEEEecccccc----CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTT----WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~----~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+|.|.+..++|. -........++++...+.|||.|+|+|.-.+
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 576666555553 3333444589999999999999999997544
No 192
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.96 E-value=7e-06 Score=72.57 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=68.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP-- 155 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p-- 155 (254)
.+.+.+.+. ..+..+|||+|||+|.++..+++.. .+ ++++|. +++++.++++ .+++|+.+|+.+.++
T Consensus 281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 344455443 5667899999999999999999874 35 999999 8888877753 579999999865321
Q ss_pred ----C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 ----A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ----~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
. .|+|++.--=-.. ...+++.+.+ ++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 3888873221111 1355665554 788876665
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=4.5e-05 Score=68.56 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=67.9
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC-CC-----CCCcEEEeCCCCC---CCCCc--cEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA-PS-----IPGVTHIGGDMFK---SIPAA--DAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~-~~-----~~~i~~~~~d~~~---~~p~~--D~v~~~~ 164 (254)
....+||||||.|.++..+++.+|+.. ++++|. ...+..+ +. ..++.++..|+.. .+|.+ |.|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 356789999999999999999999999 999998 4433332 21 1577888877631 25543 7666533
Q ss_pred ccccCCHH-------HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWTDD-------ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-= =|+.. -...+|+.+++.|+|||.|.+..
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 21 02211 12478999999999999998754
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=2.1e-05 Score=65.77 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-------CCcEEEeCCCCCC-CC-Cc-cEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-------PGVTHIGGDMFKS-IP-AA-DAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~~-D~v~~~~ 164 (254)
+-.++.|||||||+|.++..-+++. ..+ +.++|..++.+.+.+. ..|+++.|.+.+- +| +. |+|+.-+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 3457899999999999999888886 335 8999987776655432 5689999988876 77 44 9999754
Q ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEE
Q 025363 165 VLTTW-TDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 165 vlh~~-~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
.=+.. -..-...+|-.=-+.|+|||.++
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 32211 12234455555567899999764
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=2.9e-05 Score=60.67 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-----CC--ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-----PA--ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-----p~--~D~v~ 161 (254)
.+.++||++||+|.++.+++.+... . ++.+|. +..++.++++ .+++++.+|+++.+ .. .|+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 3679999999999999999998643 6 888998 6666655442 46889999996641 12 27777
Q ss_pred eccccccCCHHHHHHHHHHHHH--hCCCCCEEEEE
Q 025363 162 MKWVLTTWTDDECKLIMENCYK--ALPAGGKLIAC 194 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~--~L~pgG~l~i~ 194 (254)
+.=-... ....++++.+.+ .|+++|.+++-
T Consensus 127 ~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 127 LDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred ECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 6333221 112344444433 67777765553
No 196
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.87 E-value=0.00071 Score=55.48 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=89.2
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH-------HhhCCC----------------------------
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV-------VAEAPS---------------------------- 139 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~-------~~~~~~---------------------------- 139 (254)
....+||-=|||-|.++-.++++.-. +.+-+. --| +....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34678999999999999999988433 333333 111 111000
Q ss_pred -----------CCCcEEEeCCCCCC-CCC----c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC
Q 025363 140 -----------IPGVTHIGGDMFKS-IPA----A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 202 (254)
Q Consensus 140 -----------~~~i~~~~~d~~~~-~p~----~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 202 (254)
..+++...|||.+- .+. . |+|+..+.+. +.+...+.|+.|+++|||||..+=.-+..-...
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHFE 209 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence 03578899999886 333 3 9998886665 346788999999999999996554444332221
Q ss_pred CChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 203 NESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
. .. . .....-+.+.+|+.++.++.||++++...
T Consensus 210 ~------------~~--~-~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P------------MS--I-PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C------------CC--C-CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 0 01123568999999999999999887554
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.86 E-value=1.8e-05 Score=61.36 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=68.3
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hH---HHhhCCC---CCCcEEEeCCCCCC-CCC-ccEEEeccccccCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PE---VVAEAPS---IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT 170 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~---~~~~~~~---~~~i~~~~~d~~~~-~p~-~D~v~~~~vlh~~~ 170 (254)
+++|||+|.|.-++.++=.+|+.+ ++.+|. .. .+..+.. .++++++.+.+.+. .+. .|+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999 999996 32 2222211 16799999888872 333 49999988752
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...+++-+...++|||+++..-.
T Consensus 127 ---l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 ---LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ---HHHHHHHHGGGEEEEEEEEEEES
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEcC
Confidence 35788999999999999998653
No 198
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00021 Score=55.91 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--------
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I-------- 154 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~-------- 154 (254)
..++.+.+.-++++.+|+|+|+..|.++..+++... ... ++++|+.+|-. .+.|.++.+|++.+ .
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 345556664567889999999999999999988865 455 89999855432 25699999999887 2
Q ss_pred CC--ccEEEe---ccccccCCH------HHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 155 PA--ADAIFM---KWVLTTWTD------DECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 155 p~--~D~v~~---~~vlh~~~~------~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+. .|+|++ .++--+++- .-+..++.-+.+.|+|||.+++-.+.-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 22 288884 322222221 224567777888999999999876644
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.84 E-value=3.8e-05 Score=63.90 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=55.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC----CCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI----PGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~----~~i~~~~~d~~~ 152 (254)
+.+++++.+. ..++..+||.+||.|..+..+++.++ +.+ ++++|. |++++.+++. .|++++.+|+.+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 4567788774 67778999999999999999999986 678 999999 9898887653 478888888765
No 200
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.82 E-value=4.1e-05 Score=66.31 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=62.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC----CccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP----AADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p----~~D~v~~~~v 165 (254)
+..+|||++||+|.++..++.. ..+ ++++|. +..++.++++ .+++|..+|+.+..+ ..|+|++.=-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 3579999999999999999865 356 999998 8888776653 478999999865422 2499888322
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
--.. ..++++.+. .++|++.+++.
T Consensus 310 r~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RRGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 1111 124445554 36888766663
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.81 E-value=0.00016 Score=64.10 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CCCc-cEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IPAA-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p~~-D~v~~ 162 (254)
..++.+|||+++|.|.=+..+++...+ .. ++..|+ +.-+...+++ .+|.+...|.... .+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGA-IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 467889999999999999999998754 45 888897 6555444432 5577777776532 3443 88884
Q ss_pred ----c--cc-------cccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccC
Q 025363 163 ----K--WV-------LTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 163 ----~--~v-------lh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+ .+ ...|+.++. .+||.++.+.|||||+|+.+...+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 2 12 233544443 5799999999999999988766543
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.80 E-value=2.3e-05 Score=60.86 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=63.5
Q ss_pred HHHHHhhcCCCC--CCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC--------
Q 025363 85 MTSVLEGYNGFK--GVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-------- 153 (254)
Q Consensus 85 ~~~i~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-------- 153 (254)
..++.+.++-++ +..++||+||++|.++..++++. +..+ ++++|+..+. ..+.+.+..+|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~ 83 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRK 83 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEeccccc----cccceeeeecccchhhHHHhhhh
Confidence 345666663244 45899999999999999999997 5566 9999984431 114455555555432
Q ss_pred -CC---Cc-cEEEeccccc---c--C----CHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 154 -IP---AA-DAIFMKWVLT---T--W----TDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 -~p---~~-D~v~~~~vlh---~--~----~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+ .. |+|++--... + . +-+-+...|.-+.+.|+|||.+++--.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 12 12 8888744211 1 0 112234455555677899998887444
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00018 Score=58.49 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=60.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~-~p~- 156 (254)
..+.|++..+ ..++..|+|||+|.|.++..|+++... ++++++ +.+++..++ .++++++.+|+.+. ++.
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh
Confidence 4677888774 667889999999999999999999655 666666 555444433 37899999999986 674
Q ss_pred -c-cEEEeccccccCCHH
Q 025363 157 -A-DAIFMKWVLTTWTDD 172 (254)
Q Consensus 157 -~-D~v~~~~vlh~~~~~ 172 (254)
. +.|+. +.=++++.+
T Consensus 94 ~~~~~vVa-NlPY~Issp 110 (259)
T COG0030 94 AQPYKVVA-NLPYNISSP 110 (259)
T ss_pred cCCCEEEE-cCCCcccHH
Confidence 3 55544 333344444
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00033 Score=53.25 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCC-CCc-cEEEecc--cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI-PAA-DAIFMKW--VL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~-p~~-D~v~~~~--vl 166 (254)
..-++|||||+|..+..|++.. |+.. ....|+ |+.++...+. -++..+..|+...+ ++. |+++.+- +.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 5678999999999999998875 5666 778898 8887765432 34667788887763 344 7776632 22
Q ss_pred cc------------CC-----HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TT------------WT-----DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~------------~~-----~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-. |. -+-..++|.++-..|.|.|.+++.-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 11 11 0112355666666677777666543
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.72 E-value=0.00018 Score=60.53 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCC-C-c-cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A-A-DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p-~-~-D~v~~~~vlh~~~~ 171 (254)
+.++.++|||||++|.++..++++ +.+ ++++|...+.......++|.+..+|.+...| . . |++++-.+-
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 357889999999999999999998 457 9999987777666677999999999998854 3 2 888885542
Q ss_pred HHHHHHHHHHHHhCCCC-CEEEEEccccC
Q 025363 172 DECKLIMENCYKALPAG-GKLIACEPVLP 199 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pg-G~l~i~d~~~~ 199 (254)
....+++-+.+.|..| .+-.|...-++
T Consensus 281 -~P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 281 -KPARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred -CHHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 3457777888888766 34444444443
No 206
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.59 E-value=8.5e-05 Score=57.36 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-------------CCCcEEEeCCCCCCCCCc-cEEEe
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIPAA-DAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-------------~~~i~~~~~d~~~~~p~~-D~v~~ 162 (254)
.-.+.|||||.|.++..|...+|+.- +.+.++ ..+.+-.++ ..++.+...+.+..+|+. .--.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 35689999999999999999999987 777776 433332221 156777777777666541 11111
Q ss_pred ccccccCCHHH-----------HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWTDDE-----------CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~~~~-----------~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+-.++.++|.. ...++.+..=+|++||.++.+..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 12222222221 23577888889999999987654
No 207
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.59 E-value=0.00075 Score=53.30 Aligned_cols=134 Identities=18% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-h----HHHhhCCCCCCcEEEeCCCCCCC------CCccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-P----EVVAEAPSIPGVTHIGGDMFKSI------PAADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~----~~~~~~~~~~~i~~~~~d~~~~~------p~~D~v~ 161 (254)
+++++.+||-+|.++|.....+..-.. ... +.+++. | +.+..++++++|--+-.|+..+. +..|+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEE
Confidence 578999999999999999999999765 556 677776 5 45556666788888888887762 1128877
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
.--. + ++++.-++.++..-||+||.++++=-....+...++. -.-.+-.+.|++.
T Consensus 149 ~DVa-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~---------------------~vf~~e~~~L~~~ 203 (229)
T PF01269_consen 149 QDVA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE---------------------EVFAEEVKKLKEE 203 (229)
T ss_dssp EE-S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH---------------------HHHHHHHHHHHCT
T ss_pred ecCC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH---------------------HHHHHHHHHHHHc
Confidence 6332 2 3677888899999999999988753211111000000 0112335678889
Q ss_pred CCCeeeEEEccC
Q 025363 242 GFPHLRLYRVLD 253 (254)
Q Consensus 242 Gf~~~~~~~~~~ 253 (254)
||++.+...+--
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999988877643
No 208
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0017 Score=53.69 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=94.6
Q ss_pred hHHHHHhhcCC---CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-----hH-HHhhCC----------------
Q 025363 84 FMTSVLEGYNG---FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-----PE-VVAEAP---------------- 138 (254)
Q Consensus 84 ~~~~i~~~~~~---~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-----~~-~~~~~~---------------- 138 (254)
.++.+-..+++ .....+||-=|||.|.++..|+...+.++ +--+.. .. ++...+
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q-GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ-GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 34455555541 12356889999999999999998877664 211100 00 000000
Q ss_pred ---------C--------------CCCcEEEeCCCCCCC--CC---c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCC
Q 025363 139 ---------S--------------IPGVTHIGGDMFKSI--PA---A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 139 ---------~--------------~~~i~~~~~d~~~~~--p~---~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG 189 (254)
. ....+..+|||.+-. +. . |+|+..+.+. +.....+.|+.+.+.|||||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCc
Confidence 0 023455779998863 33 2 8888876654 34677899999999999999
Q ss_pred EEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 190 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 190 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
..+=.-+......+.+ +.. ...+-+.+.+++..+.+.-||++++.+.
T Consensus 291 vWiNlGPLlYHF~d~~---------g~~-----~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTH---------GVE-----NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EEEeccceeeeccCCC---------CCc-----ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 9876666554332100 000 1124568999999999999999887663
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.54 E-value=0.00035 Score=58.82 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCCCCC----c
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSIPA----A 157 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~~p~----~ 157 (254)
+...++|-+|||.|-.+.++++ +|+..+++.+|+ |.|++.++.. +|++++..|.++.... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4568999999999999999874 575544899999 9999988742 7999999999987322 2
Q ss_pred cEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|.||.-..=-. ...-...++-.-+++.|+++|.+++.-.
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 88876221000 0011245677888999999999988543
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00018 Score=56.97 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-h---HHHhhCCC---CCCcEEEeCCCCCCC--CC-ccEEEeccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-P---EVVAEAPS---IPGVTHIGGDMFKSI--PA-ADAIFMKWVLT 167 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~---~~~~~~~~---~~~i~~~~~d~~~~~--p~-~D~v~~~~vlh 167 (254)
..+++|||+|.|.-+..++=.+|+.+ ++.+|. . ..++.+.. .++++++.+-+.+.. +. .|+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 68999999999999999999999999 999995 2 23333322 277999888887663 34 7999987763
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
....++.-+...+|+||+++.
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchh
Confidence 345788889999999998765
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.001 Score=51.23 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=72.9
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
.+-.+++|||+|.|+|-.++.-++... .. ++..|. |.....+.-+ -.|.+...|...+.+..|+++...++.
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~aGA-~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARAGA-AE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred cccccceeeecccccChHHHHHHHhhh-HH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 355689999999999999988777732 23 566676 5555554433 347778888776444459999999997
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+- ....+++.-..++...|-.++|.|+..+..
T Consensus 154 ~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred Cc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 64 556677875555556677888888766544
No 212
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.49 E-value=3e-05 Score=60.00 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=81.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC---ccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA---ADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~---~D~v~~~~vlh~~~~~ 172 (254)
...++||+|+|.|..+..++..+.+ +.+.++ ..|..+.+.. +.++.. ..+-+.. .|+|.+.++|..- .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk-~ynVl~--~~ew~~t~~k~dli~clNlLDRc--~ 183 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKK-NYNVLT--EIEWLQTDVKLDLILCLNLLDRC--F 183 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhc-CCceee--ehhhhhcCceeehHHHHHHHHhh--c
Confidence 4679999999999999888766654 333355 4566555543 222221 1122211 2999999988653 2
Q ss_pred HHHHHHHHHHHhCCC-CCEEEEEccccCC------CCCChhhhhhcccchHhhhhccccCceec--CHHHHHHHHHhCCC
Q 025363 173 ECKLIMENCYKALPA-GGKLIACEPVLPD------DSNESQRTRALLEGDIFVMTIYRAKGNHR--TEQEFKQLGFFAGF 243 (254)
Q Consensus 173 ~~~~il~~~~~~L~p-gG~l~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf 243 (254)
+.-++|+.++.+|+| .|++++.= ++|- .....+. ..|-. + ...|+.+ ....+.++|+++||
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~~-----rPdn~-L---e~~Gr~~ee~v~~~~e~lr~~g~ 253 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLPL-----RPDNL-L---ENNGRSFEEEVARFMELLRNCGY 253 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCcC-----CchHH-H---HhcCccHHHHHHHHHHHHHhcCc
Confidence 456999999999999 68876632 2221 0010010 00100 1 1134433 23467899999999
Q ss_pred CeeeEEEcc
Q 025363 244 PHLRLYRVL 252 (254)
Q Consensus 244 ~~~~~~~~~ 252 (254)
.+....++|
T Consensus 254 ~veawTrlP 262 (288)
T KOG3987|consen 254 RVEAWTRLP 262 (288)
T ss_pred hhhhhhcCC
Confidence 987766553
No 213
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.48 E-value=0.00017 Score=62.48 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=68.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC--C-ccEEEeccccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP--A-ADAIFMKWVLT 167 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p--~-~D~v~~~~vlh 167 (254)
..+|||++||+|..+..++...+..+ +++.|. +..++.++++ ..+.+..+|+.+.+. . .|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999998876556 999999 8887776653 346688888755432 2 49998832 2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.....++..+.+.++|||.|.+.
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12246788877888999999997
No 214
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00015 Score=57.17 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=68.6
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcE--EEeCCCCCC-CCC-c-cEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVT--HIGGDMFKS-IPA-A-DAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~--~~~~d~~~~-~p~-~-D~v~~~~vlh 167 (254)
+....++|||||-|.....+.... +...+..|. -.|++.++.. +.|. ...+|-..- +.+ . |+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345689999999999999998875 322788898 7888887765 4443 344554332 333 3 9999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
|. .+...-+.+|+.+|||+|.++-
T Consensus 149 -W~-NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 149 -WT-NDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred -hh-ccCchHHHHHHHhcCCCccchh
Confidence 43 3445678899999999997654
No 215
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.43 E-value=0.0014 Score=48.64 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=63.9
Q ss_pred EEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCCC---C---cEEEeCCCCC---CCCC--c-cEEEecccc
Q 025363 101 LVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSIP---G---VTHIGGDMFK---SIPA--A-DAIFMKWVL 166 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~~---~---i~~~~~d~~~---~~p~--~-D~v~~~~vl 166 (254)
++|+|||+|... .+....+. .. ++++|. +.++...+... . +.+..+|... ++.. . |++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999987 33333332 35 777888 66665533211 1 5788888765 2333 3 888444444
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+... ....++++.+.++|+|.+++.+.....
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4433 678999999999999999998776543
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.42 E-value=0.00035 Score=57.57 Aligned_cols=97 Identities=14% Similarity=0.273 Sum_probs=67.3
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----CCCcEEEeCCCCCC-CCC-
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA- 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----~~~i~~~~~d~~~~-~p~- 156 (254)
+++.+++..+ ..++..|+|||+|.|.++..|++.. .+ +++++. +.+.+..++ .++++++.+|+.+. .+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 5667777774 7789999999999999999999997 44 888887 665555443 47899999999986 444
Q ss_pred ---ccEEEeccccccCCHHHHHHHHHHHHHhCCCC
Q 025363 157 ---ADAIFMKWVLTTWTDDECKLIMENCYKALPAG 188 (254)
Q Consensus 157 ---~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pg 188 (254)
..+.+..+.=+.. ...++.++...-+.|
T Consensus 94 ~~~~~~~vv~NlPy~i----s~~il~~ll~~~~~g 124 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNI----SSPILRKLLELYRFG 124 (262)
T ss_dssp CSSSEEEEEEEETGTG----HHHHHHHHHHHGGGC
T ss_pred hcCCceEEEEEecccc----hHHHHHHHhhccccc
Confidence 3344444433333 245666666644443
No 217
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00033 Score=55.88 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=75.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC----CCeEEEeec-hHHHhhCCC-----CCC--cEEEeCCCCCC---CCCc---c
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF----ICEGINFDL-PEVVAEAPS-----IPG--VTHIGGDMFKS---IPAA---D 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~----~~~~~~~D~-~~~~~~~~~-----~~~--i~~~~~d~~~~---~p~~---D 158 (254)
+..+++|+|+|+..=+..+++.+.+ ++ .+-+|. ..++....+ .+. |.-+++|+... +|.. =
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 3779999999999999999988765 55 888898 666554322 244 44466777665 3443 3
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+++...|-++++++|..+|.+++.+|+||-++++.-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4667889999999999999999999999999988853
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.40 E-value=0.00029 Score=53.81 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=70.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC-CCCccEEEeccccccCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPAADAIFMKWVLTTWT 170 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~ 170 (254)
..+.|+|.|+|.++.-.+++ .-+ +++++. |...+.+.++ .+++++.+|+.+. +..+|+|+|-..=-.+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 47899999999999866655 234 888888 6666666554 6899999999887 76679999854322222
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.-+.+++.+-+-||-+++++=.+.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHHH
Confidence 45567889999999999988775443
No 219
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.39 E-value=0.00017 Score=56.70 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=63.5
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEecc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~~~ 164 (254)
..++.+|+|.-||.|.++..+++..+... +++.|+ |...+-.+++ .+|....+|..+..+. +|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 46788999999999999999999766667 999999 8776655432 6789999998776543 39888855
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
.- .+..+|..+.+++++||.+.
T Consensus 178 p~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PE------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TS------SGGGGHHHHHHHEEEEEEEE
T ss_pred hH------HHHHHHHHHHHHhcCCcEEE
Confidence 32 23467888999999998764
No 220
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.015 Score=45.24 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-h----HHHhhCCCCCCcEEEeCCCCCCC------CCccEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-P----EVVAEAPSIPGVTHIGGDMFKSI------PAADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~----~~~~~~~~~~~i~~~~~d~~~~~------p~~D~v~~ 162 (254)
+.+++.+||=+|..+|.....+..-.+... +.+++. | +.+..++++++|--+-+|+-.+. +..|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 578999999999999999999999988655 555554 3 45556667788887888887652 11388765
Q ss_pred ccccccCC-HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhC
Q 025363 163 KWVLTTWT-DDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFA 241 (254)
Q Consensus 163 ~~vlh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 241 (254)
+.+ ++++.-+..++..-||+||.+++.=-....+...++. + .-.+-.+.|++.
T Consensus 152 -----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~--------------------~-vf~~ev~kL~~~ 205 (231)
T COG1889 152 -----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE--------------------E-VFKDEVEKLEEG 205 (231)
T ss_pred -----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH--------------------H-HHHHHHHHHHhc
Confidence 222 4567778889999999999877643322211111111 0 112234678889
Q ss_pred CCCeeeEEEcc
Q 025363 242 GFPHLRLYRVL 252 (254)
Q Consensus 242 Gf~~~~~~~~~ 252 (254)
||++.+..++.
T Consensus 206 ~f~i~e~~~Le 216 (231)
T COG1889 206 GFEILEVVDLE 216 (231)
T ss_pred CceeeEEeccC
Confidence 99998887664
No 221
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.37 E-value=0.00028 Score=60.65 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=42.7
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 152 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~ 152 (254)
.+|||++||+|.++..+++... + ++++|. +++++.++++ .+++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988863 6 999998 8888877764 468899998865
No 222
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.27 E-value=0.00035 Score=60.27 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=42.3
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFK 152 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~ 152 (254)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 5 999998 8888777654 478899988865
No 223
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00042 Score=50.70 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-c--cEEEeccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-A--DAIFMKWVLT 167 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-~--D~v~~~~vlh 167 (254)
.+++++|+|||.|.+.. +-.++..+.++++|+ |+.++-...+ -++++.+.|+.+..+. + |.+++.--+-
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 47899999999999994 444555544899999 8888877655 3577888888777433 2 8777755443
No 224
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.21 E-value=0.00073 Score=50.18 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCC-CCCc-c
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPAA-D 158 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~-~p~~-D 158 (254)
..+..+|+|+|||.|.++..++.. .++.+ ++++|. +...+.+... .++.+..++..+. .... +
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 456789999999999999999982 26778 999998 6666555432 4566666665444 2222 7
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+++.-|.=-+.+ ..+|+.+.+ |+-+.++
T Consensus 102 ~~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 102 ILVGLHACGDLS----DRALRLFIR---PNARFLV 129 (141)
T ss_pred EEEEeecccchH----HHHHHHHHH---cCCCEEE
Confidence 777755554443 345555555 5544444
No 225
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.19 E-value=0.0023 Score=49.55 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCC--------eEEEeec-hHHHhhCCCC-------CCcEEEeCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFIC--------EGINFDL-PEVVAEAPSI-------PGVTHIGGD 149 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~--------~~~~~D~-~~~~~~~~~~-------~~i~~~~~d 149 (254)
..++..- .++++..|+|-=||+|.+.++.+...++.. .+++.|+ +.+++.++.+ ..|.+...|
T Consensus 18 ~~ll~la-~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 18 AALLNLA-GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHT-T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHh-CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 3344444 477888999999999999988776654422 1678998 8888777653 458899999
Q ss_pred CCCC-CCC-c-cEEEecccccc-CCH-HH----HHHHHHHHHHhCCCCCEEEE
Q 025363 150 MFKS-IPA-A-DAIFMKWVLTT-WTD-DE----CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 150 ~~~~-~p~-~-D~v~~~~vlh~-~~~-~~----~~~il~~~~~~L~pgG~l~i 193 (254)
+.+. .+. . |+|++.--.-. ... .+ -.+++++++++|+|...+++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9876 343 3 99998432221 121 22 23568888999998433333
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.17 E-value=0.0061 Score=48.04 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC-CC-c-cEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI-PA-A-DAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~-p~-~-D~v~~~~vl 166 (254)
+.++.||||.++.+...+.+.++... ++..|. +.-++.+... ++++...+|-+..+ ++ . |+++...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 44599999999999999999999888 999997 6555544332 78999999998873 44 2 8777644
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+...-...||++-.+-|+.=-++++
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEE
Confidence 3445667888888887764344444
No 227
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.17 E-value=0.0038 Score=51.31 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC---------CCCcEEEeCCCCCCC----------CCc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS---------IPGVTHIGGDMFKSI----------PAA 157 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~---------~~~i~~~~~d~~~~~----------p~~ 157 (254)
+...|+.+|||--.-...+... ++++ +.-+|.|++++.-++ ..+..++..|+.+++ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3567999999998888776322 2466 788888987764322 257889999987332 112
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChh-hhhhcccchHhhhhccccCce----ecCH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGN----HRTE 231 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~t~ 231 (254)
-++++-.++..++.+++.++|+.+.+...||+.|++ |...+-...... .... ... .. ....+. ..+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRAGMRAP--VYH---AA-RGVDGSGLVFGIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHHHHHHH--HHH---hh-hcccccccccCCCh
Confidence 478888899999999999999999999889988775 444331111000 0000 000 00 000011 1367
Q ss_pred HHHHHHHHhCCCCeeeE
Q 025363 232 QEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 232 ~e~~~ll~~aGf~~~~~ 248 (254)
+++.++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999997654
No 228
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.15 E-value=0.00016 Score=50.83 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=40.3
Q ss_pred EEecCcccHHHHHHHHHcCCC---CeEEEeec-h---HHHhhCCC---CCCcEEEeCCCCCCC---C-Cc-cEEEecccc
Q 025363 102 VDVGGSAGDCLRMILQKHRFI---CEGINFDL-P---EVVAEAPS---IPGVTHIGGDMFKSI---P-AA-DAIFMKWVL 166 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~---~~~~~~D~-~---~~~~~~~~---~~~i~~~~~d~~~~~---p-~~-D~v~~~~vl 166 (254)
||||+..|..+..+++..+.. + ++.+|. + ...+..++ ..+++++.++..+.+ + .. |++++-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 689999999999998876544 5 788998 5 23333332 268999999986653 3 22 8888743 3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|. .+....-++.+.+.|+|||.+++.|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 32 3566788999999999999988865
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0042 Score=48.72 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=78.5
Q ss_pred chhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC-----CCcEEEeCCCCCC---
Q 025363 82 VPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI-----PGVTHIGGDMFKS--- 153 (254)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~-----~~i~~~~~d~~~~--- 153 (254)
.+.+....++. ..++.+||.||=|-|.....+.++-|... .|.---|+++++.++. .+|....|-..+.
T Consensus 88 tpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 88 TPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 33444444444 36788999999999999998888888766 6654459999888764 5676666654433
Q ss_pred CCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 154 IPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 154 ~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+|+. |-|+.--.-.. .++...+.+.+.++|||+|.+-.+....-
T Consensus 165 L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred ccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 4543 66654322111 26788899999999999999887765443
No 230
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.11 E-value=0.0013 Score=51.58 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=55.8
Q ss_pred CCeEEEecCcccHHHHHH---HHHc-CCCCeEEEeec--hHHHhhCCCC----CCcEEEeCCCCCC--C-C------Cc-
Q 025363 98 VKRLVDVGGSAGDCLRMI---LQKH-RFICEGINFDL--PEVVAEAPSI----PGVTHIGGDMFKS--I-P------AA- 157 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l---~~~~-~~~~~~~~~D~--~~~~~~~~~~----~~i~~~~~d~~~~--~-p------~~- 157 (254)
...|+|+|--.|..+... ++.+ ++.+ ++++|+ ...-..+.+. +||+++.||..+. + + ..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 579999997666665544 4555 6667 888987 2222223332 8999999998765 1 1 11
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
-++++-..=|.. +.+.+.|+.....++||++++|.|....
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 234444444543 4567889999999999999999887654
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00025 Score=52.83 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCC--C-C--ccEEE
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSI--P-A--ADAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~--p-~--~D~v~ 161 (254)
+.+||++||| +|-.+..++..-|... +-+.|- .+.++..++. .++.....+....+ . + .|.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4789999999 5666666666667767 777775 4444443321 34444444443331 1 2 29999
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+..++.. ++--..+.+.|+..|+|.|+-++.-
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 9998863 5667789999999999999866644
No 232
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.05 E-value=0.00022 Score=53.97 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC-----C-ccEEEe
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP-----A-ADAIFM 162 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p-----~-~D~v~~ 162 (254)
.|+|+-||.|..++++++.+.. ++.+|+ |..++.++.+ ++|.|+.+|+++..+ . .|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6899999999999999999754 888898 7777766653 689999999987632 1 378876
No 233
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0075 Score=49.01 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=83.1
Q ss_pred cccCchHHHHHHHHHhcCCch----hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-hHHHhh
Q 025363 63 YGKIPEMNGLMRKAMSGVSVP----FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVAE 136 (254)
Q Consensus 63 ~~~~~~~~~~~~~~m~~~~~~----~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~ 136 (254)
++-.|++ |-.+|-..+.. -+..|+..++ ..++.+|++-|.|+|.++.++++.. |..+ +.-+|. ..-.+.
T Consensus 71 L~PTpEL---WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~k 145 (314)
T KOG2915|consen 71 LQPTPEL---WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEK 145 (314)
T ss_pred ecCChHH---hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHH
Confidence 3445555 44555555553 3566788885 8999999999999999999999986 5556 777786 332223
Q ss_pred CCC----C---CCcEEEeCCCCCC-CCC----ccEEEeccccccCCHHHHHHHHHHHHHhCCCCC-EEEEEcccc
Q 025363 137 APS----I---PGVTHIGGDMFKS-IPA----ADAIFMKWVLTTWTDDECKLIMENCYKALPAGG-KLIACEPVL 198 (254)
Q Consensus 137 ~~~----~---~~i~~~~~d~~~~-~p~----~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG-~l~i~d~~~ 198 (254)
+.+ . .++++..-|.... ++. +|.|++ +++. .-..+-.++.+||.+| +|+...+.+
T Consensus 146 a~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPa--Pw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 146 ALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPA--PWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred HHHHHHHhCCCcceEEEEeecccCCccccccccceEEE-----cCCC--hhhhhhhhHHHhhhcCceEEeccHHH
Confidence 322 2 6789999898877 443 498887 3322 2345667777888765 777655444
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.0041 Score=49.28 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHh-------hCCCCCCcEEEeCCCCCCC----CC----c-c
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVA-------EAPSIPGVTHIGGDMFKSI----PA----A-D 158 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~-------~~~~~~~i~~~~~d~~~~~----p~----~-D 158 (254)
..++++|||.=||..+..++.+.|. .+ ++.+|. +...+ .+.....|+++.+...+.+ +. . |
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGr-v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGR-VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCce-EEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 4789999999999999999999985 45 888887 43333 3333378999999988763 21 2 8
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.+++- +|- +.......++-+++|+||.|++-...++.
T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 88762 343 34458999999999999998886655554
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.01 Score=47.43 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=87.6
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeC-CCCCCCC----Cc
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGG-DMFKSIP----AA 157 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~-d~~~~~p----~~ 157 (254)
....++.|+-..++..+||||+.||.++.-++++. ++.+.++|. ..+....+..+||...+. |+..-.| +.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 34456666533467899999999999999999883 333788886 334444555567665443 3322122 22
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE-ccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFK 235 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 235 (254)
|++++--.+ -....+|..+...++|++.++.. -+-+.-... ...- -..+.-......-..++.
T Consensus 145 ~d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~---------~v~k-kGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 145 PDLIVIDVSF-----ISLKLILPALLLLLKDGGDLVLLVKPQFEAGRE---------QVGK-KGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred CCeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEEEecchhhhhhh---------hcCc-CceecCcchHHHHHHHHH
Confidence 777774443 34568999999999999876652 221111100 0000 000001112223467888
Q ss_pred HHHHhCCCCeeeEEE
Q 025363 236 QLGFFAGFPHLRLYR 250 (254)
Q Consensus 236 ~ll~~aGf~~~~~~~ 250 (254)
+++++.||++..+..
T Consensus 210 ~~~~~~g~~~~gl~~ 224 (245)
T COG1189 210 NFAKELGFQVKGLIK 224 (245)
T ss_pred HHHhhcCcEEeeeEc
Confidence 999999999877654
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.96 E-value=0.0029 Score=52.11 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCeEEEecCcccHH-HHHHHHHc-CCCCeEEEeec-hHHHhhCCC--------CCCcEEEeCCCCCC---CCCccEEEec
Q 025363 98 VKRLVDVGGSAGDC-LRMILQKH-RFICEGINFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPAADAIFMK 163 (254)
Q Consensus 98 ~~~vlDvG~G~G~~-~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~--------~~~i~~~~~d~~~~---~p~~D~v~~~ 163 (254)
..+|+=||+|.=-+ ++.+++.+ ++.. ++.+|+ |+..+.+++ ..+++|+++|..+. +.+.|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999996554 44455443 5667 889998 776666543 17899999998654 2334999887
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
...- .+.++-.++|.++.+.|+||.+|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7664 23445679999999999999988874
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.90 E-value=0.0011 Score=49.06 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=41.0
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMF 151 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~ 151 (254)
+++|||||.|.++..+++.+|..+ ++.+|. |.+.+.+++. +++.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999888 999998 8887766543 34676665554
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.90 E-value=0.0081 Score=56.48 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=74.0
Q ss_pred hhHHHHHhhcCCC-CCCCeEEEecCcccHHHHHHHHHc----C-------------------------------------
Q 025363 83 PFMTSVLEGYNGF-KGVKRLVDVGGSAGDCLRMILQKH----R------------------------------------- 120 (254)
Q Consensus 83 ~~~~~i~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----~------------------------------------- 120 (254)
.++..++..- .| .+...++|-.||+|.++++.+... |
T Consensus 176 tlAaa~l~~a-~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRS-GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHc-CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3455666665 47 567899999999999998876531 1
Q ss_pred -CCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC---C-ccEEEeccccc-cCC-HHHHHHHHHHHHHh
Q 025363 121 -FICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP---A-ADAIFMKWVLT-TWT-DDECKLIMENCYKA 184 (254)
Q Consensus 121 -~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p---~-~D~v~~~~vlh-~~~-~~~~~~il~~~~~~ 184 (254)
..+ ++++|+ +.+++.++.+ .+|.|..+|+.+. .+ + .|+|+++=-.- .+. ..+...+.+.+.+.
T Consensus 255 ~~~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 235 789998 8888877764 4689999999775 22 1 39998853221 122 23444554444444
Q ss_pred CC---CCCEEEEEcc
Q 025363 185 LP---AGGKLIACEP 196 (254)
Q Consensus 185 L~---pgG~l~i~d~ 196 (254)
++ ||+++++...
T Consensus 334 lk~~~~g~~~~llt~ 348 (702)
T PRK11783 334 LKQQFGGWNAALFSS 348 (702)
T ss_pred HHHhCCCCeEEEEeC
Confidence 43 8988877543
No 239
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.89 E-value=0.0015 Score=55.19 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH-------cCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCC-C-C-
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK-------HRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKS-I-P- 155 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~-------~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~-~-p- 155 (254)
..+..+|+|-+||+|.++.++.+. .+... +.++|. +.+...++.+ ....+..+|.+.. . .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 556778999999999999998875 35667 889998 6655444321 3346788898876 2 2
Q ss_pred -C-ccEEEecc--ccccCCH-----------------HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 -A-ADAIFMKW--VLTTWTD-----------------DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 -~-~D~v~~~~--vlh~~~~-----------------~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|++.- ....|.+ ..-..++..+.+.|++||++.++-
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 2 39998732 2221111 111248899999999999876643
No 240
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.84 E-value=0.0034 Score=54.35 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCC-CeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC-------CccE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-------AADA 159 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p-------~~D~ 159 (254)
.+.+|||+=|=||.++...+.. ++ + ++.+|+ ...++-++++ .++.|+.+|.|+.+. ..|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3889999999999999887766 45 6 999998 6677766654 568999999998742 1399
Q ss_pred EEecc-ccc-----cCC-HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 160 IFMKW-VLT-----TWT-DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 160 v~~~~-vlh-----~~~-~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|++-= .+- .|. ..+-.+++..+.++|+|||.++++....
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99811 111 122 2345689999999999999999976543
No 241
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.80 E-value=0.005 Score=55.94 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=43.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC--------CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC--------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF--------ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS-------- 153 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~--------~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~-------- 153 (254)
...+|+|.|||+|.++..+++..+. .. ++++|+ +..+..++.. ..+.....|+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence 4569999999999999999987752 34 688888 6665544322 2345555555432
Q ss_pred CCCccEEEe
Q 025363 154 IPAADAIFM 162 (254)
Q Consensus 154 ~p~~D~v~~ 162 (254)
.+..|+|+.
T Consensus 110 ~~~fD~IIg 118 (524)
T TIGR02987 110 LDLFDIVIT 118 (524)
T ss_pred cCcccEEEe
Confidence 112399988
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.80 E-value=0.0038 Score=49.09 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCC---Cc-cEEEecc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIP---AA-DAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p---~~-D~v~~~~ 164 (254)
....|+|.-||.|..++.++.++|. ++.+|+ |.-++-++.+ +||+|++||+++... -+ |.|.+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4568999999999999999999876 778888 7667666654 799999999987632 12 4433322
Q ss_pred ccccCC-HHHHHHHHHHHHHhCCCCC
Q 025363 165 VLTTWT-DDECKLIMENCYKALPAGG 189 (254)
Q Consensus 165 vlh~~~-~~~~~~il~~~~~~L~pgG 189 (254)
.---|+ +.....-+-.+...++|.|
T Consensus 171 ~sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 171 LSPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred cCCCCCCcchhhhhhhhhhhhcchhH
Confidence 222233 2233444445555555553
No 243
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.77 E-value=0.0014 Score=50.94 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=63.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC------CCc-cEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI------PAA-DAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~------p~~-D~v~ 161 (254)
.+.++||+=||+|.++.+.+.+. +.+++.+|. +..+...+++ .++..+..|.+..+ ... |+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 47899999999999999999884 433888898 6666665543 46888889976652 223 9999
Q ss_pred eccccccCCHHHHHHHHHHHH--HhCCCCCEEEEEccc
Q 025363 162 MKWVLTTWTDDECKLIMENCY--KALPAGGKLIACEPV 197 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~--~~L~pgG~l~i~d~~ 197 (254)
+-=-.... ....++++.+. ..|+++|.+++ |..
T Consensus 120 lDPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~-E~~ 154 (183)
T PF03602_consen 120 LDPPYAKG--LYYEELLELLAENNLLNEDGLIII-EHS 154 (183)
T ss_dssp E--STTSC--HHHHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred ECCCcccc--hHHHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence 84433321 11356777776 68888887665 443
No 244
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.65 E-value=0.0026 Score=54.57 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=74.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCCc--cEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPAA--DAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~~--D~v~~~~ 164 (254)
.+...++|+|||.|.....+..- .... .+++|. +.-....... ....++.+|+.+. +++. |.+.+..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 44558999999999999887654 3445 677776 4333333221 4556688888876 5543 9998888
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+..+.++ ...++++++++++|||.++..|......
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 8888754 4689999999999999999988876543
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.54 E-value=0.0028 Score=55.79 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCC--eEEEeechHHHhhCCCCCCcEEEeCCCCCCC---CC-ccEEEecccccc
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFIC--EGINFDLPEVVAEAPSIPGVTHIGGDMFKSI---PA-ADAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~--~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~---p~-~D~v~~~~vlh~ 168 (254)
+..-..|+|..+|.|.++.+|.+. .+- +++-.+-+..+...-++.=|. +-.|..+.+ |. .|++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 455688999999999999999765 232 012111133333333322222 234666654 44 399999999887
Q ss_pred CCHH-HHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDD-ECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+.+. +...+|-++=|+|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6543 467899999999999999999664
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.53 E-value=0.061 Score=46.58 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCCeEEEecCcccHHHHHH--------HHHc-------CCCCeEEEeechHH-----HhhCC---------------CCC
Q 025363 97 GVKRLVDVGGSAGDCLRMI--------LQKH-------RFICEGINFDLPEV-----VAEAP---------------SIP 141 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l--------~~~~-------~~~~~~~~~D~~~~-----~~~~~---------------~~~ 141 (254)
...+|+|+|||+|..+..+ .+++ |..+ +..=|+|.- ..... ...
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~ 141 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH 141 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence 3678999999999765443 2222 3455 666676521 11100 001
Q ss_pred C---cEEEeCCCCCC-CCCc--cEEEeccccccCCH--H----------------------------------HHHHHHH
Q 025363 142 G---VTHIGGDMFKS-IPAA--DAIFMKWVLTTWTD--D----------------------------------ECKLIME 179 (254)
Q Consensus 142 ~---i~~~~~d~~~~-~p~~--D~v~~~~vlh~~~~--~----------------------------------~~~~il~ 179 (254)
+ +.-+.|+|.+. +|.. ++++.++.+|-.+. + +-..+|+
T Consensus 142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 23355888887 7775 99999999985541 1 1123455
Q ss_pred HHHHhCCCCCEEEEEccccC
Q 025363 180 NCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 180 ~~~~~L~pgG~l~i~d~~~~ 199 (254)
.=++-|.|||++++.=.-.+
T Consensus 222 ~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 222 ARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHhccCcEEEEEEecCC
Confidence 55667899999998765543
No 247
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.016 Score=44.46 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=62.0
Q ss_pred hhcCCCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeechHHHhhCCCCCCcEEEeC-CCCCC---------CCC--
Q 025363 90 EGYNGFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVAEAPSIPGVTHIGG-DMFKS---------IPA-- 156 (254)
Q Consensus 90 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~-d~~~~---------~p~-- 156 (254)
+.|.-+++..+|||+||..|.++.-..++. |+.. +.++|+-.+... +.+.++.+ |+.++ +|+
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIEPP----EGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeeccCC----CCcccccccccCCHHHHHHHHHhCCCCc
Confidence 334345788999999999999999888776 8888 899997443221 34555555 55443 133
Q ss_pred ccEEEecccccc----------CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTT----------WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~----------~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|+|+.- ..++ -.-+-|..+|.-....++|+|.++.--.
T Consensus 137 VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred ccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2776642 2221 1112344455555566789998776433
No 248
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.51 E-value=0.0056 Score=52.93 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=69.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCC---C-ccEEEecccc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIP---A-ADAIFMKWVL 166 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p---~-~D~v~~~~vl 166 (254)
..+|||.-||+|..++..+...+++..++..|+ |..++.++++ .++.+..+|+...+. . .|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998765544899998 8777766653 347788888876532 2 39988733 3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
. ....++..+.+.+++||.|.+.
T Consensus 124 G-----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-----CcHHHHHHHHHhcccCCEEEEE
Confidence 2 1246889999999999999997
No 249
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.036 Score=47.73 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC--CCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC---CC
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS---IP 155 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~---~p 155 (254)
....+ ...++.+|||..++.|.=+..+++...+ .. ++.+|. +.-+...+.+ .++..+..|.... .+
T Consensus 148 ~a~~L-~p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVL-DPKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHc-CCCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 34455 3678899999999999999999998775 44 588997 5444443332 3455666665322 22
Q ss_pred C---ccEEEe------c-------cccccCCHHHH-------HHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 156 A---ADAIFM------K-------WVLTTWTDDEC-------KLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 156 ~---~D~v~~------~-------~vlh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
. .|.|++ . .+...++.++. .++|..+.+.|||||+|+.....+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2 366665 2 22334444432 368999999999999999987766543
No 250
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.046 Score=46.32 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=71.5
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeC-CCCCC-CCC--ccEEEe
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGG-DMFKS-IPA--ADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~-d~~~~-~p~--~D~v~~ 162 (254)
...++..|||==||||.++++..-. ++. +++.|+ ..|++.++.+ ....+... |+... +++ -|.|++
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 3567889999999999999987655 667 999999 8888888875 23334444 77664 555 277776
Q ss_pred c-----cc-cccCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 K-----WV-LTTWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~-----~v-lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
- .. ..--. ++-..++|+.+.++|++||++++.-+
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11 21111 34467899999999999999988654
No 251
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.43 E-value=0.017 Score=48.03 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCeEEEecCcccHHHHHHHHHc--------------------CCCCeEEEeec---hHHHhhCCCC--------------
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH--------------------RFICEGINFDL---PEVVAEAPSI-------------- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~--------------------~~~~~~~~~D~---~~~~~~~~~~-------------- 140 (254)
..+||-||||.|.-..+++..+ +.+. ++.+|+ ..++......
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 4799999999999888877766 1245 788887 2344332110
Q ss_pred ---------CCcEEEeCCCCCC-CC---------CccEEEecccccc---CCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 141 ---------PGVTHIGGDMFKS-IP---------AADAIFMKWVLTT---WTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 141 ---------~~i~~~~~d~~~~-~p---------~~D~v~~~~vlh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-+++|...|+.+. .+ ..++|.+.+.++- -+-.+-.++|.++...++||..|+|+|.-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 2478899998876 21 1267766655542 22456789999999999999999999864
No 252
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.41 E-value=0.0031 Score=52.39 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=68.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeCCCCCCCC-----C-ccEEE
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGGDMFKSIP-----A-ADAIF 161 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~d~~~~~p-----~-~D~v~ 161 (254)
.+++|||+=|=||.++...+.. ...+ ++.+|. ...++.++++ .+++|+..|+++.+. . .|+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 4789999999999999986654 2335 899998 7777766653 579999999988632 1 39999
Q ss_pred ec---cccccCC-HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MK---WVLTTWT-DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~---~vlh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+- ..=..+. ..+-.++++.+.++|+|||.|+++-.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 81 1111122 23456789999999999999887654
No 253
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.39 E-value=0.025 Score=48.04 Aligned_cols=98 Identities=24% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC---ccEEEecc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA---ADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~---~D~v~~~~ 164 (254)
.++.+|||.=+|-|.++..+++.. ..+ ++.+|+ |..++-.+++ ++|..+.||..+-.+. +|-|++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 458999999999999999998774 345 888998 8877666543 5688999999887544 69999977
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.- .+.+++..+.+.+++||.+...+....+.
T Consensus 265 p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 265 PK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 53 23467888888999999999988765543
No 254
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.0012 Score=48.91 Aligned_cols=39 Identities=38% Similarity=0.572 Sum_probs=36.3
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|+|++.|++.|++-++-...++.|++.|||||+|-+.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999999999999999999999999987643
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.28 E-value=0.0029 Score=50.96 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC--ccEEEeccccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA--ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~--~D~v~~~~vlh 167 (254)
+...+|+|||||.--++.......|+.. .+++|+ ..+++..... .+.+....|.....|. +|+.++.-++|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 4578999999999999999888888888 999999 6666554432 5677778899988554 49999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.+...+. -.--++-+.++ .-+++|..+
T Consensus 183 ~le~q~~-g~g~~ll~~~~-~~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALR-SPHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSC-ESEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhC-CCeEEEecc
Confidence 7743332 22233334443 235555444
No 256
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.00 E-value=0.022 Score=47.72 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=91.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcC-CCCeEEEeechHHHhhCCCC---------CCcEEEeCCCCCC-CCC----------
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKS-IPA---------- 156 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~---------~~i~~~~~d~~~~-~p~---------- 156 (254)
...|+-+|||--.-+-.+- .| +++ +.-+|.|++++.-++. .++++++.|+.++ .+.
T Consensus 93 ~~qvViLgaGLDTRayRl~--~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLD--WPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccccceeecC--CCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 6799999999665544332 23 355 7777889998764432 2799999999954 432
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCC---hhhhhhcccchHhhhhccccCceecCHH
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNE---SQRTRALLEGDIFVMTIYRAKGNHRTEQ 232 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 232 (254)
. -++++-.++-.++.++..++|+.|.....||..++............ ..........+..... ..=......
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~ 246 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE---LVYFGDDPA 246 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc---ceeccCCHH
Confidence 1 47888999999999999999999999999999887755311111000 1100000000000000 000013578
Q ss_pred HHHHHHHhCCCCeeeE
Q 025363 233 EFKQLGFFAGFPHLRL 248 (254)
Q Consensus 233 e~~~ll~~aGf~~~~~ 248 (254)
++..++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987655
No 257
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.89 E-value=0.097 Score=44.74 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCCCCeEEEecCcccHHHHHHHHH--------cC--------CCCeEEEeechHH-----HhhCC-------CCCC--cE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQK--------HR--------FICEGINFDLPEV-----VAEAP-------SIPG--VT 144 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~--------~~--------~~~~~~~~D~~~~-----~~~~~-------~~~~--i~ 144 (254)
.+...+|+|+||.+|..+..+... ++ ..+ ++.-|+|.- ..... ..++ +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 556789999999999987765543 21 234 566676521 10000 0123 34
Q ss_pred EEeCCCCCC-CCCc--cEEEeccccccCCH-------------------------------------HHHHHHHHHHHHh
Q 025363 145 HIGGDMFKS-IPAA--DAIFMKWVLTTWTD-------------------------------------DECKLIMENCYKA 184 (254)
Q Consensus 145 ~~~~d~~~~-~p~~--D~v~~~~vlh~~~~-------------------------------------~~~~~il~~~~~~ 184 (254)
-+.++|.+. +|.. |+++.++.||-.+. .+...+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 467999988 7875 99999999985431 1112344444567
Q ss_pred CCCCCEEEEEccccCC
Q 025363 185 LPAGGKLIACEPVLPD 200 (254)
Q Consensus 185 L~pgG~l~i~d~~~~~ 200 (254)
|+|||++++.=...++
T Consensus 173 Lv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEEE-ST
T ss_pred eccCcEEEEEEeeccc
Confidence 8899999987666554
No 258
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.77 E-value=0.099 Score=44.45 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=66.7
Q ss_pred CCCCCCeEEEecC-cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC---CCCCCCC-ccEEEeccccc
Q 025363 94 GFKGVKRLVDVGG-SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD---MFKSIPA-ADAIFMKWVLT 167 (254)
Q Consensus 94 ~~~~~~~vlDvG~-G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d---~~~~~p~-~D~v~~~~vlh 167 (254)
...++.+|+=+|. |.|..+.+++++.. .+ ++++|. ++-.+.+++...-.++... ..+...+ .|+++..-.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 3567888888874 67889999999876 88 999999 7777777776555555543 2222222 488776443
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
...+...-+.|++||++++.-..
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 24467888899999999998765
No 259
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.74 E-value=0.027 Score=47.17 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=54.1
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFK 152 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~ 152 (254)
+.+++++.+. ..++..++|.=+|.|..+..++++.++.+ ++++|. |.+++.+++. .|+.++.++|.+
T Consensus 8 ll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777774 67778999999999999999999988788 999999 8888777543 477777777643
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.58 E-value=0.054 Score=43.91 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=63.9
Q ss_pred CC-CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC------------CCcEEEeCCCCCC------CC
Q 025363 95 FK-GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI------------PGVTHIGGDMFKS------IP 155 (254)
Q Consensus 95 ~~-~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~------------~~i~~~~~d~~~~------~p 155 (254)
++ ...+||++|+|+|..++..+.. ...+ ++.-|.|.+++..+.. ..+.....+...+ .|
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~~-~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAALL-LGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHHH-hcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 44 4678999999999666655544 3556 7777876665554332 1455555444443 23
Q ss_pred C-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 A-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .|+|+.+.++.+ ++....++.-++..|-.++.+++.-
T Consensus 161 ~~~DlilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 161 NPFDLILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred CcccEEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEE
Confidence 4 599999998874 3445678888888898888554433
No 261
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.47 E-value=0.075 Score=46.86 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=68.9
Q ss_pred CeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCC-----CCCCcEEEeCCCCCC-CCCc--cEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAP-----SIPGVTHIGGDMFKS-IPAA--DAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~-----~~~~i~~~~~d~~~~-~p~~--D~v~~~~vlh~ 168 (254)
.+++-+|||...+...+-+. +.+ ++-+|. +.+++... ..+-+.+...|+... ++.. |+|+....+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~d---I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFED---ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCC---ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccc
Confidence 49999999999888877665 233 566676 44444333 235688899999886 6653 99999888886
Q ss_pred C-CHHH-------HHHHHHHHHHhCCCCCEEEEEccc
Q 025363 169 W-TDDE-------CKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 169 ~-~~~~-------~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+ +++. +...+.++.++|+|||+.+.+-..
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 3 2322 334689999999999998887763
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.44 E-value=0.034 Score=46.60 Aligned_cols=65 Identities=28% Similarity=0.243 Sum_probs=48.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDM 150 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~ 150 (254)
+.+++++.+. ..++..++|.=-|.|..+.++++++|+.+ ++++|. |.+++.+++. +|+.++.++|
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-G
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccH
Confidence 4667788884 77888999999999999999999999988 999999 8888766543 6788877776
No 263
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.37 E-value=0.051 Score=46.57 Aligned_cols=111 Identities=18% Similarity=0.345 Sum_probs=76.8
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec---hHHHhhCCC-------------CCCcEEEeC
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL---PEVVAEAPS-------------IPGVTHIGG 148 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~---~~~~~~~~~-------------~~~i~~~~~ 148 (254)
...+++.+ ...+....+|+|+|.|.....++....... -+++.+ |.-.+.... ...++.+.+
T Consensus 181 l~si~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 181 LRSIVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHh-ccCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 34466666 478888999999999999998877654433 444443 322222111 145888889
Q ss_pred CCCCC------CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 149 DMFKS------IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 149 d~~~~------~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+|..+ .+++++|++.++.. +++ ...=++++..-+++|.+++-.+...+.
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~F--dp~-L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAF--DPE-LKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccC--CHH-HHHhhHHHHhhCCCcceEecccccccc
Confidence 98876 14469999999875 333 334455888999999999999888773
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.35 E-value=0.0066 Score=42.44 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=29.9
Q ss_pred cEEEeccc---cc-cCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 158 DAIFMKWV---LT-TWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 158 D~v~~~~v---lh-~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
|+|++..| +| +|.|+....+++++++.|+|||+|++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 77877554 34 47799999999999999999999887
No 265
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.032 Score=45.96 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=67.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----------CCcEEEeCCCCCC---CCC--ccE
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IPA--ADA 159 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~----------~~i~~~~~d~~~~---~p~--~D~ 159 (254)
....+++-||+|-|.+.....++ +.+..+..+|+ ..+++..++. ++|....||-+.. .++ .|+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45688999999999999998887 66553677787 5555544432 7899999987765 333 298
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLTTWTDD--ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|+.-..=-..+.. --..+.+-+.++|||||.++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 8863211111111 12356778889999999998865
No 266
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.028 Score=49.76 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS 153 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~ 153 (254)
+-+.. ..+.+..++|+-||||..+..+++.... ++++++ |+.++.|+.+ .+.+|++|...+.
T Consensus 375 i~e~~-~l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 375 IGEWA-GLPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHh-CCCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 33444 4777899999999999999999988654 778877 7777776654 6789999855443
No 267
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.22 Score=42.94 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=74.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCC----CCe----------------------------------E
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRF----ICE----------------------------------G 125 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~----~~~----------------------------------~ 125 (254)
++..++..- +|.+...++|-=||+|+++++.+...++ ..| .
T Consensus 179 LAaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 179 LAAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 345555555 5888899999999999999998877642 111 5
Q ss_pred EEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC-C-ccEEEec--cccccCCHHHHH----HHHHHHHHhCCCC
Q 025363 126 INFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP-A-ADAIFMK--WVLTTWTDDECK----LIMENCYKALPAG 188 (254)
Q Consensus 126 ~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p-~-~D~v~~~--~vlh~~~~~~~~----~il~~~~~~L~pg 188 (254)
++.|+ +.+++.|+.+ +.|+|..+|+... .| + .|+||++ +-...-+.+... .+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 68899 8898888765 5699999999765 33 3 3999983 333322222222 2444555666655
Q ss_pred CEEEEEc
Q 025363 189 GKLIACE 195 (254)
Q Consensus 189 G~l~i~d 195 (254)
++.++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666643
No 268
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.086 Score=40.83 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=63.2
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCC---C-C--ccEEEe
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSI---P-A--ADAIFM 162 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~---p-~--~D~v~~ 162 (254)
.+.++||+=+|+|.++.+-+.+.- .+ ++.+|. .......+++ .++.+...|....+ + . .|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-AR-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ce-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 478999999999999999998843 24 788887 5554444432 67888888887432 1 1 399998
Q ss_pred cccccc-CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 163 KWVLTT-WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 163 ~~vlh~-~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-=-++. .-+.+...++-.-...|+|+|.+++-.
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 555551 111122222223456799999877743
No 269
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.31 Score=40.62 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHc--CCCCeEEEeechHHHhhCCC---C-------------------------CCcE
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKH--RFICEGINFDLPEVVAEAPS---I-------------------------PGVT 144 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~---~-------------------------~~i~ 144 (254)
......|+.+|||.-.....+...+ +.+. .+-+|.|++++.--. . ++..
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~ 163 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYH 163 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCcee
Confidence 4567899999999999999999988 6777 888898776553211 0 2333
Q ss_pred EEeCCCCCC--C----CCc-------cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhc
Q 025363 145 HIGGDMFKS--I----PAA-------DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRAL 211 (254)
Q Consensus 145 ~~~~d~~~~--~----p~~-------D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~ 211 (254)
....|.-+. + ..+ -+++.--+|-.++++++..+++.+.+..+ .+.+++.|.+.+.++-
T Consensus 164 ~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~F-------- 234 (335)
T KOG2918|consen 164 LIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRF-------- 234 (335)
T ss_pred eeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChH--------
Confidence 333443311 0 000 24555667888899999999999998875 5566777877654421
Q ss_pred ccchHhhhhccc------cCce--ecCHHHHHHHHHhCCCCeeeEEEc
Q 025363 212 LEGDIFVMTIYR------AKGN--HRTEQEFKQLGFFAGFPHLRLYRV 251 (254)
Q Consensus 212 ~~~~~~~~~~~~------~~~~--~~t~~e~~~ll~~aGf~~~~~~~~ 251 (254)
+-.|.. .. ..|- .-|.+..++-+.++||+-+.+.++
T Consensus 235 ---g~vM~~-nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 235 ---GKVMLA-NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ---HHHHHH-HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 111111 00 0111 137888899999999998877654
No 270
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.61 E-value=0.013 Score=50.36 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=44.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDM 150 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~ 150 (254)
+.+.+++.++ ..+. +|||+=||.|.++..+++... + +++++. +++++.|+.+ .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 4555666664 4444 799999999999999998864 4 888998 8888877653 6789987765
No 271
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.50 E-value=0.065 Score=41.58 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC---------CCcEEEeCCCCCC-C----C------Cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI---------PGVTHIGGDMFKS-I----P------AA 157 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~---------~~i~~~~~d~~~~-~----p------~~ 157 (254)
...|+.+|||--.....+....++++ .+-+|.|++++.-++. .+++++..|+.++ + . ..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44999999999999999988877777 8888999887664432 2356899999865 2 1 12
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHH
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCY 182 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~ 182 (254)
-++++-.++..++.+++..+|+.+.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 4777888899999999988888763
No 272
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.1 Score=41.50 Aligned_cols=96 Identities=24% Similarity=0.339 Sum_probs=64.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCC-C----C---eEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--------CC
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRF-I----C---EGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------PA 156 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~-~----~---~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~--------p~ 156 (254)
-+.+-.+++|+....|.++.-+.++.-. + . .++.+|+..|.. -+.|..+.+|+... . ..
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 3456789999999999999988887421 1 1 168888855532 25677788888765 1 22
Q ss_pred --ccEEEec-----cccccCCHH-H---HHHHHHHHHHhCCCCCEEEE
Q 025363 157 --ADAIFMK-----WVLTTWTDD-E---CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 --~D~v~~~-----~vlh~~~~~-~---~~~il~~~~~~L~pgG~l~i 193 (254)
+|+|++- --+|++..- + ....|.-...+|||||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 4999983 357876321 1 22455566778999999764
No 273
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.17 E-value=0.031 Score=49.29 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=67.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~~p~ 156 (254)
+...+.+..+ ..+..+++|+=||.|.++..++++.. + ++++++ ++.++.++++ .+++|+.+|.++..+.
T Consensus 281 l~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--K-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--E-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 3444555553 56778999999999999999996643 4 899998 8888887764 5699999998776221
Q ss_pred -----c-cEEEeccccccCCHHHHH-HHHHHHHHhCCCCCEEEE
Q 025363 157 -----A-DAIFMKWVLTTWTDDECK-LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 157 -----~-D~v~~~~vlh~~~~~~~~-~il~~~~~~L~pgG~l~i 193 (254)
. |+|++-= |-..+. .+++.+.+ ++|-..++|
T Consensus 357 ~~~~~~~d~VvvDP-----PR~G~~~~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 357 WWEGYKPDVVVVDP-----PRAGADREVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred ccccCCCCEEEECC-----CCCCCCHHHHHHHHh-cCCCcEEEE
Confidence 2 8888721 112222 44444444 455555555
No 274
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.82 E-value=1.7 Score=35.05 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCCCCCCC-----ccEEEeccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA-----ADAIFMKWV 165 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~~~~p~-----~D~v~~~~v 165 (254)
.+++||=|| -.-..+.+++..++..+ ++++|+ +.+++-.++. -+|+.+..|+-+++|+ .|+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 478999998 45555666666666667 999999 6666655432 3499999999999775 299887332
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGK 190 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~ 190 (254)
++.+....++.+..++||.-|.
T Consensus 122 ---yT~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 122 ---YTPEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-
T ss_pred ---CCHHHHHHHHHHHHHHhCCCCc
Confidence 3457788999999999986553
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.81 E-value=0.18 Score=41.85 Aligned_cols=67 Identities=27% Similarity=0.218 Sum_probs=55.0
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----CCcEEEeCCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----PGVTHIGGDMF 151 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----~~i~~~~~d~~ 151 (254)
+..++++.+. ..+...++|.==|.|..+..+++++|...+.+++|. |.+++.+++. +|+.++..+|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4567788884 778899999999999999999999986544899999 8888888763 57888877663
No 276
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.74 E-value=0.066 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
.+....+|||||.|-+.--|.+. +.. +.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYP-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCC-cccccc
Confidence 35678999999999998887776 445 777773
No 277
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.44 E-value=0.15 Score=44.32 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCC---CCC-c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 141 PGVTHIGGDMFKS---IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 141 ~~i~~~~~d~~~~---~p~-~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++|+++.+++.+. .|. . |.+++..+.--+++++..+.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 7899999988775 333 3 999999999888999999999999999999999998665543
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.25 Score=36.56 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=69.5
Q ss_pred HHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CCC
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IPA 156 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p~ 156 (254)
+.++..+. -++..+.+|+|.|.|....+.++.. -.. .+++++ |..+.-++-. .+..|..-|.+.. +.+
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 33455553 4667899999999999988877664 334 677888 6655544321 6788888888876 555
Q ss_pred c-cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 157 A-DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 157 ~-D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
+ .++|+ .+ +.--..+-.+++.-|+.+.+++.+-+-+|+
T Consensus 139 y~~vviF-ga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIF-GA-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred cceEEEe-eh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 4 34332 11 111224456777788899999998876664
No 279
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.75 E-value=1.1 Score=39.13 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=61.9
Q ss_pred CCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC----CCCC----CCC-c-cEEEe
Q 025363 95 FKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD----MFKS----IPA-A-DAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d----~~~~----~p~-~-D~v~~ 162 (254)
..++.+||.+|+|. |..+..++++....+ +++++. ++..+.+++.....++... +.+. .+. . |+|+-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 56678999999987 889999999876445 777776 7766665543222322211 1111 122 2 77765
Q ss_pred cc---------------ccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KW---------------VLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~---------------vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.- +|+--. +....++++.+.|+|+|++++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCccccccccccccccccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 21 111111 124578899999999999998754
No 280
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.70 E-value=0.19 Score=40.90 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCeEEEecCcccHHHHH---HHHHc--CCCCeEEEeec-h---HHHh---------------------------hCCCC-
Q 025363 98 VKRLVDVGGSAGDCLRM---ILQKH--RFICEGINFDL-P---EVVA---------------------------EAPSI- 140 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~---l~~~~--~~~~~~~~~D~-~---~~~~---------------------------~~~~~- 140 (254)
...|+|+|+=.|..+.. +++.+ ++-+ +.++|. . +.-. .....
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 57899999988876654 34444 2334 788884 2 2111 00000
Q ss_pred ---CCcEEEeCCCCCCCCCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 141 ---PGVTHIGGDMFKSIPAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 141 ---~~i~~~~~d~~~~~p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
+++.++.|.|.+.+|.. +-|-+.++=.++ .+-....|+.++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997767653 222222211122 245678999999999999999986643
No 281
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.68 E-value=0.61 Score=41.77 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=78.5
Q ss_pred cccccccCchHHHHHHHHHhcCCchhHHHHHhhcCCCC--CCCeEEEecCcccHHHHHHHHHcC----CCCeEEEeec-h
Q 025363 59 AYSYYGKIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFK--GVKRLVDVGGSAGDCLRMILQKHR----FICEGINFDL-P 131 (254)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~~D~-~ 131 (254)
-|+.+++||---+.|+++.. ..+++..+.-+ ....|+-+|+|-|-+..+.+++-. .++ .++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecCc
Confidence 36666777766566666443 33444443122 245678889999999888777632 334 566665 6
Q ss_pred HHHhhCCCC------CCcEEEeCCCCCC-CC-C-ccEEEeccccccCCHHH-HHHHHHHHHHhCCCCCEEE
Q 025363 132 EVVAEAPSI------PGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTWTDDE-CKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 132 ~~~~~~~~~------~~i~~~~~d~~~~-~p-~-~D~v~~~~vlh~~~~~~-~~~il~~~~~~L~pgG~l~ 192 (254)
..+.-.+.. .+|+.+..||.+. .| + +|+++. ..|--+.|.+ ..+.|.-+-+.|||+|.-+
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 544333322 7899999999887 44 3 387664 3344444432 3467889999999997543
No 282
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.38 E-value=1.3 Score=34.42 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCeEEEecCcccHHHHHHHHH----cCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCC-CC-------C-c-cEEE
Q 025363 98 VKRLVDVGGSAGDCLRMILQK----HRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKS-IP-------A-A-DAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~-~p-------~-~-D~v~ 161 (254)
...|+++|.-.|..+..++.. ....+ ++.+|+ ...-..+.+.++|.|++++-.++ +. + . -+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~k-vl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFK-VLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCce-EEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 568999998888777666653 22345 766665 33334444458999999998776 21 1 1 5566
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS 202 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~ 202 (254)
+-..-|+. +.....|+-....|..|-++++.|...++.+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 66666754 6677888889999999999999999887654
No 283
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.17 E-value=0.22 Score=41.54 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred HhhcCCCCCCCeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC
Q 025363 89 LEGYNGFKGVKRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA 156 (254)
Q Consensus 89 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~ 156 (254)
+..++ ..++.+|||..++.|.=+..+++... ... +++.|. +.-+...+.+ .++.....|.... .+.
T Consensus 78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGE-IVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES 155 (283)
T ss_dssp HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred ccccc-ccccccccccccCCCCceeeeeecccchhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence 34443 56788999999999999999999887 455 888897 5554444332 4566665565443 122
Q ss_pred -ccEEEe------ccccccCC-------HHH-------HHHHHHHHHHhC----CCCCEEEEEccccC
Q 025363 157 -ADAIFM------KWVLTTWT-------DDE-------CKLIMENCYKAL----PAGGKLIACEPVLP 199 (254)
Q Consensus 157 -~D~v~~------~~vlh~~~-------~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~ 199 (254)
.|.|++ ..++..-+ .++ -.++|+++.+.+ ||||+|+.....+.
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 377765 11222111 111 236899999999 99999998766543
No 284
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.01 E-value=1.8 Score=32.98 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred EecCcccHHHHHHHHHcC-CCC-eEEEeec-hHHHhhCCCC---------CCcEE-EeCCCCCC---C--CC--ccEEEe
Q 025363 103 DVGGSAGDCLRMILQKHR-FIC-EGINFDL-PEVVAEAPSI---------PGVTH-IGGDMFKS---I--PA--ADAIFM 162 (254)
Q Consensus 103 DvG~G~G~~~~~l~~~~~-~~~-~~~~~D~-~~~~~~~~~~---------~~i~~-~~~d~~~~---~--p~--~D~v~~ 162 (254)
=||=|.=.++..|+++++ ... .++.+|. .++.++-... ..+.+ ..-|+.+- . .. .|.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788889999887 333 1466666 4444444321 22222 22333332 2 12 288887
Q ss_pred ccccccCC----H-------HHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 163 KWVLTTWT----D-------DECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 163 ~~vlh~~~----~-------~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
++----.. . +-...+++.+.++|+++|.+.|.-
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 55322200 1 224468889999999999998843
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.28 E-value=2.2 Score=38.66 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC--------------C------
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK--------------S------ 153 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~--------------~------ 153 (254)
.++.+|+=+|+| .|..+...++... .+ ++++|. ++.++.++.. ..++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 357899999998 5667777777765 47 999998 8888777664 22322211111 1
Q ss_pred ------CCCccEEEeccccccCCHHHHHHH-HHHHHHhCCCCCEEEEEcc
Q 025363 154 ------IPAADAIFMKWVLTTWTDDECKLI-MENCYKALPAGGKLIACEP 196 (254)
Q Consensus 154 ------~p~~D~v~~~~vlh~~~~~~~~~i-l~~~~~~L~pgG~l~i~d~ 196 (254)
..++|++|..-..- ......+ .++..+.+||||.++.+-.
T Consensus 240 ~~~~~~~~gaDVVIetag~p---g~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIP---GKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCCC---cccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 12349888755432 1112234 5999999999999877643
No 286
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=0.8 Score=39.18 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=41.6
Q ss_pred cCchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc----C----CCCeEEEeec-hHH
Q 025363 65 KIPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH----R----FICEGINFDL-PEV 133 (254)
Q Consensus 65 ~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----~----~~~~~~~~D~-~~~ 133 (254)
..|+....|...++. ..-+..+.+ ..+....++|+|+|+|.++..+++.. | .++ +..++. |+.
T Consensus 50 TApels~lFGella~----~~~~~wq~~-g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~~L 121 (370)
T COG1565 50 TAPELSQLFGELLAE----QFLQLWQEL-GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSPEL 121 (370)
T ss_pred echhHHHHHHHHHHH----HHHHHHHHh-cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCHHH
Confidence 356777777765554 233333444 34556789999999999999988764 3 345 667776 544
No 287
>PRK10742 putative methyltransferase; Provisional
Probab=88.79 E-value=0.8 Score=37.24 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCCCCC--eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHH
Q 025363 85 MTSVLEGYNGFKGVK--RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV 133 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~ 133 (254)
.+.++++. ..+++. +|||.=+|+|..+..++.+ +++ ++.++. |.+
T Consensus 75 ~~~l~kAv-glk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~v 122 (250)
T PRK10742 75 GEAVAKAV-GIKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVV 122 (250)
T ss_pred ccHHHHHh-CCCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHH
Confidence 35677777 467666 9999999999999999988 677 999997 544
No 288
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.73 E-value=0.6 Score=34.43 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=43.6
Q ss_pred EEEeec-hHHHhhCCCC-------CCcEEEeCCCCC---CCCC-c-cEEEecccc-----cc-C-CHHHHHHHHHHHHHh
Q 025363 125 GINFDL-PEVVAEAPSI-------PGVTHIGGDMFK---SIPA-A-DAIFMKWVL-----TT-W-TDDECKLIMENCYKA 184 (254)
Q Consensus 125 ~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~---~~p~-~-D~v~~~~vl-----h~-~-~~~~~~~il~~~~~~ 184 (254)
+.+||+ ++.++..+++ .|++++..+=.+ .+++ . |+++.+.-. |. . ..+.-...++++.+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 778898 7777776643 567776643322 2444 3 776653211 10 1 134566889999999
Q ss_pred CCCCCEEEEEcc
Q 025363 185 LPAGGKLIACEP 196 (254)
Q Consensus 185 L~pgG~l~i~d~ 196 (254)
|+|||.+.++-.
T Consensus 82 L~~gG~i~iv~Y 93 (140)
T PF06962_consen 82 LKPGGIITIVVY 93 (140)
T ss_dssp EEEEEEEEEEE-
T ss_pred hccCCEEEEEEe
Confidence 999999988654
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.65 E-value=3.1 Score=35.79 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=63.8
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCC--------CCC-C-CccEEEeccc
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMF--------KSI-P-AADAIFMKWV 165 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~--------~~~-p-~~D~v~~~~v 165 (254)
..+|+=+|+| .|.++..+++.....+ +++.|. ++-++.+++........-.-. +.. + ..|+++-..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 3489999999 4777788888887777 999999 888888876321121111111 011 1 2388885443
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
....+..+.++++|||++++.-....+
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998776554
No 290
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.28 E-value=0.84 Score=37.50 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCC
Q 025363 111 CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGG 189 (254)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG 189 (254)
++.+|.++.+..+ ++++|. +...+.+.+.+-+.-...+ .+.+.++|+|++.- |.....++++++...+++|+
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence 3567778888888 999998 7777777554333333322 12245569988754 45677889999999888886
Q ss_pred EEE
Q 025363 190 KLI 192 (254)
Q Consensus 190 ~l~ 192 (254)
.+.
T Consensus 74 iv~ 76 (258)
T PF02153_consen 74 IVT 76 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.99 E-value=4.9 Score=32.59 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-CCCCeEEEeec-----hHHHhhCCCCCCcEEEeCCCCCCCC------CccEEE
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-RFICEGINFDL-----PEVVAEAPSIPGVTHIGGDMFKSIP------AADAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~~D~-----~~~~~~~~~~~~i~~~~~d~~~~~p------~~D~v~ 161 (254)
+.+++.+||-+|+++|.....+.+-. |... +.+++. -+.+.-++++.+|--+.-|+.-+.. --|+|+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEe
Confidence 67899999999999999988887764 4444 444443 2344455555666555556654421 116665
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. .+-+ ++++..+.-+..--||+||.++|.=
T Consensus 232 a-Dvaq---pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 A-DVAQ---PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred c-cCCC---chhhhhhhhhhhhhhccCCeEEEEE
Confidence 4 2222 3455555667888999999888753
No 292
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.56 E-value=3.4 Score=34.76 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=48.9
Q ss_pred CCeEEEecCcc-c-HHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGGSA-G-DCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~G~-G-~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
..+|.=||+|. | .++..+.+.....+ ++++|. ++..+.+++..-+.....+..+...++|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 35788888774 2 23333443322235 888898 6655554432211111112111134459888744 33444
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 025363 175 KLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i 193 (254)
..+++.+...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 6778888888888875543
No 293
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.86 E-value=3.7 Score=39.00 Aligned_cols=151 Identities=9% Similarity=0.000 Sum_probs=86.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFKS 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~~ 153 (254)
-.+|.=||+|+=...++..-...+.. ++++|. ++.++.+... .||++. .|. +.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 46789999987444444444444778 999998 6665543211 355543 233 23
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccCc
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAKG 226 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 226 (254)
+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-............++.+. +-...|
T Consensus 390 ~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 390 FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCC
Confidence 4456988754 44444 4456899999999999987766555443210000000000111111100 000011
Q ss_pred ---eecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 227 ---NHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 227 ---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
...+.+...+++++.|...+.+.+.+|+
T Consensus 467 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 467 EKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 1234567788899999999999888885
No 294
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=86.79 E-value=1.5 Score=33.62 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.0
Q ss_pred cEEEeccccccCCH----------HHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 158 DAIFMKWVLTTWTD----------DECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 158 D~v~~~~vlh~~~~----------~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
|+|+++++||+++- +...+++++++++|+|+..|+....+.
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999864 456788889999999987777655543
No 295
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=85.95 E-value=0.87 Score=39.94 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=52.2
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC--CCC--ccEEEecccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPA--ADAIFMKWVL 166 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~--~p~--~D~v~~~~vl 166 (254)
.-+||||.|||-++....++..+ . +++++. .+|.+.+++- ++|+++.---.+- .|. +|+++...+.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD-~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGAD-S-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCC-e-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh
Confidence 46899999999999988888643 4 777776 6777666542 5566654332222 222 3655543333
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCC
Q 025363 167 TTWTDDECKLIMENCYKAL-PAG 188 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L-~pg 188 (254)
-.+-.+.+..-++++.+.| +||
T Consensus 146 tEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 146 TELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhccccchhHHHHHHHhcccC
Confidence 2222233445566666655 554
No 296
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=85.67 E-value=7.5 Score=30.97 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC--------------------------------
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI-------------------------------- 140 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~-------------------------------- 140 (254)
-+...++-|-.||+|.++.-+.-.+++ ++++++-|+ +++++.++++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 456789999999999988877666553 334677788 7777766531
Q ss_pred ----------------CCcEEEeCCCCCCC-------CCc-cEEEecc---ccccCCH----HHHHHHHHHHHHhCCCCC
Q 025363 141 ----------------PGVTHIGGDMFKSI-------PAA-DAIFMKW---VLTTWTD----DECKLIMENCYKALPAGG 189 (254)
Q Consensus 141 ----------------~~i~~~~~d~~~~~-------p~~-D~v~~~~---vlh~~~~----~~~~~il~~~~~~L~pgG 189 (254)
....+...|+|++. +.. |+|+.-- -.-+|.. +-...+|..++++|.+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 23567888998852 112 8888622 2224543 446789999999996566
Q ss_pred EEEEEc
Q 025363 190 KLIACE 195 (254)
Q Consensus 190 ~l~i~d 195 (254)
.+++++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666644
No 297
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.43 E-value=4.9 Score=33.43 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=52.0
Q ss_pred CeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe-CCC-CCCCCCccEEEeccccccCCHHH
Q 025363 99 KRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG-GDM-FKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 99 ~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~-~d~-~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
.+|+=+|.| .|.++..+.++..... +++.|. ...++.+.... +.... -+. ......+|+|+++- |-..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Vivav-----Pi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVAV-----PIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEec-----cHHH
Confidence 456666655 4556666666666655 777887 55555554432 22221 222 22244569999865 4456
Q ss_pred HHHHHHHHHHhCCCCCE
Q 025363 174 CKLIMENCYKALPAGGK 190 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~ 190 (254)
...+++++...|+||..
T Consensus 77 ~~~~l~~l~~~l~~g~i 93 (279)
T COG0287 77 TEEVLKELAPHLKKGAI 93 (279)
T ss_pred HHHHHHHhcccCCCCCE
Confidence 67889999999998864
No 298
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.28 E-value=1.6 Score=35.84 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHc-----CCCCeEEEeec
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKH-----RFICEGINFDL 130 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~-----~~~~~~~~~D~ 130 (254)
-+.+...++|+|||.|.++..+.+.. +... ++.+|.
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 35677899999999999999999998 4556 888997
No 299
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.77 E-value=4.8 Score=38.30 Aligned_cols=152 Identities=9% Similarity=-0.008 Sum_probs=86.7
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFK 152 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~ 152 (254)
+-.+|.=||+|+=...++.+-...+.. ++++|. ++.++.+.+. .||++.. |. +
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-A 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-H
Confidence 446788999886555555444445778 999998 6665543321 3455432 22 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccC
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAK 225 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 225 (254)
.+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-..........+.++.+. +-...
T Consensus 389 ~~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred HhcCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 24556988864 55544 3456899999999999988776555444211000000000111111110 00011
Q ss_pred ce---ecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 GN---HRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
|. ..+.+...+++++.|-..+.+...+|+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 11 124567788899999999988888875
No 300
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.67 E-value=2.6 Score=34.59 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCC-c--cEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPA-A--DAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~-~--D~v~~~~vlh~~~~ 171 (254)
+.+++.-+|+|.-.|.++-.|.++ ++. ++.+|...|.+..-..++|+.+..|-|...|. . |-.+|-.|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~-V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------ 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMR-VYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------ 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceE-EEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------
Confidence 457899999999999999999998 677 99999877776666668999999999988663 2 65555333
Q ss_pred HHHHHHHHHHHHhCCCC
Q 025363 172 DECKLIMENCYKALPAG 188 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pg 188 (254)
++..++-..+...|..|
T Consensus 280 EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 EKPARVAALIAKWLVNG 296 (358)
T ss_pred cCcHHHHHHHHHHHHcc
Confidence 44556666777777655
No 301
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=84.35 E-value=3.5 Score=36.54 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCeEEEecCcccH--HHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCC-CC----C-ccEEE
Q 025363 98 VKRLVDVGGSAGD--CLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKS-IP----A-ADAIF 161 (254)
Q Consensus 98 ~~~vlDvG~G~G~--~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~-~p----~-~D~v~ 161 (254)
...+.|+|.|.|. .+..++..-..-. +..+|. ..|....... ..+.....-|++. .| . .|+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~-~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKRE-YSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccce-eEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3567888876554 4444443322223 677787 5555444321 1111111123222 22 2 39999
Q ss_pred eccccccCCHH-HHHHHHHH-HHHhCCCCCEEEEEccccC
Q 025363 162 MKWVLTTWTDD-ECKLIMEN-CYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 162 ~~~vlh~~~~~-~~~~il~~-~~~~L~pgG~l~i~d~~~~ 199 (254)
+.+++|..... ....+.++ .++..++|++++++|....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999986532 33344444 4556789999999986433
No 302
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.34 E-value=7.4 Score=33.89 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHH----HHHHc---CCCCeEEEeec
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRM----ILQKH---RFICEGINFDL 130 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~----l~~~~---~~~~~~~~~D~ 130 (254)
.+.|++++. -.....|+|+|-|.|.-=.. |+++. |.++ +|+++.
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~ 149 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGP 149 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccC
Confidence 456888885 56778899999999974333 44432 4556 888887
No 303
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.25 E-value=5.9 Score=32.84 Aligned_cols=81 Identities=14% Similarity=-0.017 Sum_probs=47.4
Q ss_pred eEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+|.=||+|. |.++..|.++ +.+ ++++|. ++..+.+.....+.....+. +...++|+|++.- +.....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 466677663 4455555444 446 888998 66666554432222211111 1133459988753 4566678
Q ss_pred HHHHHHHhCCCCC
Q 025363 177 IMENCYKALPAGG 189 (254)
Q Consensus 177 il~~~~~~L~pgG 189 (254)
+++++...++|+.
T Consensus 73 ~~~~l~~~l~~~~ 85 (279)
T PRK07417 73 PSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHhCCCCc
Confidence 8899998888774
No 304
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=84.07 E-value=11 Score=30.06 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=52.2
Q ss_pred CCeEEEecCccc----HHHHHHHHHcCCCCeEEEeec-hHHHh---hCCCC---CCcEEEeCCCCCC-CCC---ccEEEe
Q 025363 98 VKRLVDVGGSAG----DCLRMILQKHRFICEGINFDL-PEVVA---EAPSI---PGVTHIGGDMFKS-IPA---ADAIFM 162 (254)
Q Consensus 98 ~~~vlDvG~G~G----~~~~~l~~~~~~~~~~~~~D~-~~~~~---~~~~~---~~i~~~~~d~~~~-~p~---~D~v~~ 162 (254)
.+.|+++.++.| ..+...+.+..+.+.+++++- .+..+ ..... +.++|+.++..+. .+. .|.++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 567888854432 344445555555552333332 22211 11111 4578888886544 433 488776
Q ss_pred ccccccCCHHHHH-HHHHHHHHhCCCCCEEEEEccccCC
Q 025363 163 KWVLTTWTDDECK-LIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 163 ~~vlh~~~~~~~~-~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
-.= .++.. ++|+.+. +.|.|.+++.......
T Consensus 122 Dc~-----~~d~~~~vl~~~~--~~~~GaVVV~~Na~~r 153 (218)
T PF07279_consen 122 DCK-----REDFAARVLRAAK--LSPRGAVVVCYNAFSR 153 (218)
T ss_pred eCC-----chhHHHHHHHHhc--cCCCceEEEEeccccC
Confidence 433 34445 6666544 5577888888876653
No 305
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.66 E-value=6.3 Score=37.46 Aligned_cols=152 Identities=11% Similarity=0.016 Sum_probs=84.2
Q ss_pred CCCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMF 151 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~ 151 (254)
+-.+|.=||+|+=...++..-. ..+.. ++.+|. ++.++.+... .+|++.. |.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~- 384 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY- 384 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-
Confidence 3578899999874444333333 44677 999998 6655543210 3555542 22
Q ss_pred CCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh--------hccc
Q 025363 152 KSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM--------TIYR 223 (254)
Q Consensus 152 ~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 223 (254)
+.+.++|+|+=. +..+. +-..++++++-+.++|+..|......++-..-............++.+ ....
T Consensus 385 ~~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 385 RGFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred HHhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 234456988764 44443 445689999999999998877655444321100000000011111110 0000
Q ss_pred cC--ceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 224 AK--GNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 224 ~~--~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
.+ ...-+.+...+++++.|...+.+.+.+|+
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 10 11124566778889999999988888875
No 306
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.48 E-value=3.1 Score=39.11 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCeEEEecCcccHHHHHHHHHc-------C-----CCCeEEEeec-h---HHHhhCC----------------------
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKH-------R-----FICEGINFDL-P---EVVAEAP---------------------- 138 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~-------~-----~~~~~~~~D~-~---~~~~~~~---------------------- 138 (254)
..-+|+|+|=|+|......++.+ | .+. ++.++. | +-+..+.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~-~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLH-FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34789999999999887777655 3 234 666664 2 1111110
Q ss_pred CC-------C--CcEEEeCCCCCCCC---C-ccEEEecccc-----ccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 139 SI-------P--GVTHIGGDMFKSIP---A-ADAIFMKWVL-----TTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 139 ~~-------~--~i~~~~~d~~~~~p---~-~D~v~~~~vl-----h~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
.. . ++++..||+.+.++ . .|++++--.- ..|+ ..+|+++++.++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~----~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS----PNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhcc----HHHHHHHHHHhCCCCEEEE
Confidence 00 1 23345577655433 2 3887763211 1243 4689999999999988764
No 307
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.13 E-value=21 Score=28.58 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=48.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCC--CCeEEEee--chHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRF--ICEGINFD--LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~--~~~~~~~D--~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~ 172 (254)
....||-.||..|...-++++.+.. .. +.... ++.|...+.+ .++.....|.. .++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~-V~AtaR~~e~M~~L~~~-~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYL-VYATARRLEPMAQLAIQ-FGLKPYKLDVS------------------KPE 65 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeE-EEEEccccchHhhHHHh-hCCeeEEeccC------------------ChH
Confidence 3568999999999999999988743 33 43333 2444444332 34555555542 457
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 025363 173 ECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i 193 (254)
++.++..+++.- |.|+|=+
T Consensus 66 ~V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--CCCceEE
Confidence 778888888876 7887644
No 308
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.95 E-value=6.4 Score=37.58 Aligned_cols=152 Identities=12% Similarity=0.067 Sum_probs=85.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFK 152 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~ 152 (254)
+-.+|.=||+|+=...++..-...+.. ++.+|. ++.++.+... .+|++. .|+ +
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-S 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H
Confidence 346788899986444444444444778 999998 7666553321 345543 233 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhh-------ccccC
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-------IYRAK 225 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 225 (254)
.+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-.....+....+.++.+. +-...
T Consensus 411 ~~~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~ 487 (737)
T TIGR02441 411 GFKNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIIT 487 (737)
T ss_pred HhccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeC
Confidence 34456887753 55544 4456899999999999988877655544211000000000111111110 00011
Q ss_pred ce---ecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 GN---HRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
+. .-+.+...+++++.|-..+.+...+|+
T Consensus 488 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF 519 (737)
T TIGR02441 488 HDGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519 (737)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEEECCcCCc
Confidence 11 124556678889999999888888875
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.46 E-value=6.4 Score=33.37 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=64.6
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCC--CcEEEeCCC-CCCC--------CC--cc
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIP--GVTHIGGDM-FKSI--------PA--AD 158 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~--~i~~~~~d~-~~~~--------p~--~D 158 (254)
.++.+.+||=+|+| .|.++...++++...+ +++.|+ +.-++.+++.. .+......- .+.+ .. .|
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 46788999999999 5777888888888778 999999 88888887741 111111110 0000 11 16
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 159 AIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 159 ~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+.+-...++ ..++....++++||.+++...-.+
T Consensus 245 ~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 245 VTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred eEEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 666544443 456677889999999888775443
No 310
>PHA01634 hypothetical protein
Probab=81.19 E-value=2 Score=31.07 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAP 138 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~ 138 (254)
.+.+|+|||++-|..++.++-+ +++.++.++. |...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHH
Confidence 3789999999999999999977 4443788876 54444443
No 311
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.12 E-value=19 Score=25.65 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CC---CccEEEeccccccCCHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IP---AADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p---~~D~v~~~~vlh~~~~~~ 173 (254)
..+|++||-|.=......++... .. +++.|+.+- .+. ..++++.-|.+++ .. ++|+|..-. ++.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g-~d-v~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE 82 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG-FD-VLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE 82 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC-Cc-EEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCHH
Confidence 55999999886665555444442 56 888898332 222 5799999999988 33 348887633 4566
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 025363 174 CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i 193 (254)
....+-.+.++++ ..++|
T Consensus 83 l~~~ildva~aVg--a~l~I 100 (129)
T COG1255 83 LQSAILDVAKAVG--APLYI 100 (129)
T ss_pred HHHHHHHHHHhhC--CCEEE
Confidence 6666666666654 34444
No 312
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=79.97 E-value=2.8 Score=35.16 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--------CCcEEEeC----CCCCCC--C-Cc-cEE
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--------PGVTHIGG----DMFKSI--P-AA-DAI 160 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--------~~i~~~~~----d~~~~~--p-~~-D~v 160 (254)
..++||||+|....=--|..+..+++ +++.|+ +..++.|++. .+|+++.. +++..+ + +. |+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999987754333333334788 999998 7676666542 57887654 344442 1 22 899
Q ss_pred EeccccccC
Q 025363 161 FMKWVLTTW 169 (254)
Q Consensus 161 ~~~~vlh~~ 169 (254)
+|.=-+|.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 998888863
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.72 E-value=1.9 Score=35.19 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.+..+++++.+.++.||.++++|.-.+
T Consensus 172 ~~~~~l~~l~~~~~~~g~~l~iDYG~~ 198 (252)
T PF02636_consen 172 GALQWLEQLAERLPKGGALLIIDYGYP 198 (252)
T ss_dssp CHHHHHHHHHHHCCC-EEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCCC
Confidence 567899999999988899999998763
No 314
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.50 E-value=12 Score=31.32 Aligned_cols=86 Identities=17% Similarity=0.114 Sum_probs=51.3
Q ss_pred CCCeEEEecC-cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC-ccEEEeccccccCCHHH
Q 025363 97 GVKRLVDVGG-SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 97 ~~~~vlDvG~-G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~~~~~ 173 (254)
+..+++=+|+ |.|.++.++++...... ++++|. ++-++.+....-+ |..+..+. .|+|+-.-. .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~-v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~G-----~-- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSP-PAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDASG-----D-- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECCC-----C--
Confidence 3557777785 47888888888875434 556676 5555544332111 11111122 387774321 1
Q ss_pred HHHHHHHHHHhCCCCCEEEEEcc
Q 025363 174 CKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...++.+.+.|+|+|++++.-.
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEee
Confidence 2456788899999999998654
No 315
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.14 E-value=2 Score=32.33 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=49.2
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------CCcEEEeCCCCCCCCCccEEEeccc
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------PGVTHIGGDMFKSIPAADAIFMKWV 165 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------~~i~~~~~d~~~~~p~~D~v~~~~v 165 (254)
+|.=+|+|....+.+..-...+-+ ++.+.. ++.++..++. .++.+ .-|..+-+.++|+|++.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiiav- 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAV- 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecc-
Confidence 466688887776665444433446 888887 5544433221 22322 223322244568888633
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+......+++++...++++-.+++.
T Consensus 78 ----Ps~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 78 ----PSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -----GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ----cHHHHHHHHHHHhhccCCCCEEEEe
Confidence 2233468899999999877766663
No 316
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=79.14 E-value=2.3 Score=37.76 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=52.6
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEE------Eeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccC
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGI------NFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTW 169 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~------~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~ 169 (254)
.+++|+=||||+=..+.++--+-.++. ++ ++|. ..-.+.+.+ +. |...+..+-.+.+|+|++. .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvglr~~~id~~~~s~~kA~~-dG--F~v~~~~Ea~~~ADvVviL-----l 105 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLD-ISYALRKEAIAEKRASWRKATE-NG--FKVGTYEELIPQADLVINL-----T 105 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccce-eEEeccccccccccchHHHHHh-cC--CccCCHHHHHHhCCEEEEc-----C
Confidence 368999999986555444443333444 44 1221 111222211 12 2223332225667998873 3
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
||..-..+-+++...||||..|.+..-.
T Consensus 106 PDt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 106 PDKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 5555566779999999999999886543
No 317
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.49 E-value=1.8 Score=30.43 Aligned_cols=81 Identities=30% Similarity=0.252 Sum_probs=47.7
Q ss_pred CcccHHHHHHHHHcC--CCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--CC-----CccEEEeccccccCCHHHHH
Q 025363 106 GSAGDCLRMILQKHR--FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--IP-----AADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 106 ~G~G~~~~~l~~~~~--~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~p-----~~D~v~~~~vlh~~~~~~~~ 175 (254)
||.|..+..+++.+. +.+ ++++|. ++..+.+++. .+.++.||..+. +. .+|.+++..- +|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 455677777766543 335 899998 7777666553 488999999886 22 2366655321 344444
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 025363 176 LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~i 193 (254)
.+...+ +.+.|..+++.
T Consensus 78 ~~~~~~-r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLA-RELNPDIRIIA 94 (116)
T ss_dssp HHHHHH-HHHTTTSEEEE
T ss_pred HHHHHH-HHHCCCCeEEE
Confidence 444444 55566666655
No 318
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.34 E-value=1.7 Score=36.29 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=46.9
Q ss_pred CcEEEeCCCCCCCCC-----c--cEEEe-ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhccc
Q 025363 142 GVTHIGGDMFKSIPA-----A--DAIFM-KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLE 213 (254)
Q Consensus 142 ~i~~~~~d~~~~~p~-----~--D~v~~-~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~ 213 (254)
+|.|+..|..+.++. . |+|++ .+..|.+.++ +.++++|+|.|++ |... ..
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaK-------------fm 258 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAK-------------FM 258 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecch-------------hh
Confidence 578888887776542 1 87765 4566666543 7778999988776 3311 01
Q ss_pred chHhhhhccccCceecCHHHHHHHHHhCCCCeee
Q 025363 214 GDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLR 247 (254)
Q Consensus 214 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 247 (254)
.++.- ....--.+.+.++++++||+...
T Consensus 259 vdLrK------Eq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 259 VDLRK------EQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred eeCCH------HHHHHHHHHHHHHHHHCCCcccc
Confidence 11100 01111245788999999998654
No 319
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.74 E-value=13 Score=31.73 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCH
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 171 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~ 171 (254)
..++.+||=+|+| .|..+..++++ ....+ ++++|. ++-++.++..... ....+..+.. ..|+|+-.-- .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~-vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~G--~--- 232 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESK-LVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECVG--G--- 232 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCc-EEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECCC--C---
Confidence 3567889988864 55566777775 45567 888887 6555554432211 1111111101 1377763221 0
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 172 DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
......++...++|++||++++.-.
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123567888899999999988764
No 320
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.71 E-value=11 Score=31.98 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=50.9
Q ss_pred CCeEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------------CCcEEEeCCCCCCCC
Q 025363 98 VKRLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 98 ~~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------------~~i~~~~~d~~~~~p 155 (254)
..+|.=||+|+ ...+..++. .+.+ ++++|. ++.++.++.. .++++.. |+.+...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~-V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av~ 82 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLD-VVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACVA 82 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHhc
Confidence 46788888873 233333443 3677 999998 6655432210 2344332 2211134
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++|+|+-. +..+. +--.++++++-+.++|+..|..
T Consensus 83 ~aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 83 DADFIQES-APERE--ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred CCCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEE
Confidence 45888864 33332 3346788999999999874443
No 321
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.60 E-value=14 Score=30.84 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=76.2
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------C------------CCcEEEeCCCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------I------------PGVTHIGGDMFKSI 154 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~------------~~i~~~~~d~~~~~ 154 (254)
.+|.=||+|+=...++..-...+.+ ++++|. ++.++.+.+ . .|+++ ..|. +..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HHh
Confidence 4788888874333333322333667 999998 776665221 1 23443 2333 334
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhC-CCCCEEEEEccccCCCCCCh---hhhh--hcccch-Hh--hhhc--cc
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKAL-PAGGKLIACEPVLPDDSNES---QRTR--ALLEGD-IF--VMTI--YR 223 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L-~pgG~l~i~d~~~~~~~~~~---~~~~--~~~~~~-~~--~~~~--~~ 223 (254)
.++|+|+-. +..+. +-..++++.+-+.+ +|+..|.......+...-.. ...+ ..+.++ .. .+.. ..
T Consensus 83 ~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~ 159 (286)
T PRK07819 83 ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPT 159 (286)
T ss_pred CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCC
Confidence 456888864 33322 33457888888888 77776665544433211000 0001 001111 00 0000 00
Q ss_pred cCceecCHHHHHHHHH-hCCCCeeeEEEccCC
Q 025363 224 AKGNHRTEQEFKQLGF-FAGFPHLRLYRVLDY 254 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~-~aGf~~~~~~~~~~~ 254 (254)
..+...+.+....+++ .-|-..+.+...+|+
T Consensus 160 ~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf 191 (286)
T PRK07819 160 LVTSEATVARAEEFASDVLGKQVVRAQDRSGF 191 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEecCCCCh
Confidence 1112234566677777 489888888777774
No 322
>PRK13699 putative methylase; Provisional
Probab=76.43 E-value=4.6 Score=32.50 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 025363 174 CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i 193 (254)
....+++++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45789999999999998876
No 323
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=76.30 E-value=14 Score=35.12 Aligned_cols=150 Identities=12% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCeEEEecCcccHHHHHHHHH-cCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFK 152 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~-~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~ 152 (254)
..+|.=||+|+=...++..-. ..+.. ++++|. ++.++.+... .+|++. .|. +
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~ 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIP-VRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-R 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh-H
Confidence 457888888754444443322 24677 999998 6655543211 345543 222 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhh--------hhcccc
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV--------MTIYRA 224 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 224 (254)
.+.++|+|+-. +..++ +--.++++++-+.++|+..|......++-..-..........+.++. +. -..
T Consensus 381 ~~~~adlViEa-v~E~l--~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lV-Evv 456 (699)
T TIGR02440 381 GFKDVDIVIEA-VFEDL--ALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLV-EVI 456 (699)
T ss_pred HhccCCEEEEe-ccccH--HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceE-EEe
Confidence 34456888864 44443 44568999999999999877665544332100000000000111110 00 001
Q ss_pred Cce---ecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 225 KGN---HRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 225 ~~~---~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
.|. ..+.+...+++++.|.+.+.+.+.+|+
T Consensus 457 ~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGf 489 (699)
T TIGR02440 457 PHAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEccccch
Confidence 111 224567778899999999999888885
No 324
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=75.72 E-value=6.7 Score=28.36 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=43.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CC---CccEEEeccccccCCHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP---AADAIFMKWVLTTWTDD 172 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p---~~D~v~~~~vlh~~~~~ 172 (254)
..+|+|||-|.=.-....++.. +.. +++.|. +. .+. ..+.++.-|.+++ +. ++|+|.+-. ++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~d-V~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFD-VIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-E-EEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCc-EEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 4599999988666555555544 266 888998 44 222 6789999999987 22 349988755 334
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEc
Q 025363 173 ECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d 195 (254)
+...-+-++++.. |.-++|.-
T Consensus 82 El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-
T ss_pred HHhHHHHHHHHHh--CCCEEEEC
Confidence 4455555565554 55555543
No 325
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.72 E-value=3.8 Score=31.83 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=50.8
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------------CCcEEEeCCCCCCCCCcc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------------PGVTHIGGDMFKSIPAAD 158 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------------~~i~~~~~d~~~~~p~~D 158 (254)
++|.=+|.|.=.+..+++-+-.+.+ ++++|. ++.++..... .|+.+. .|+.+.+..+|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccc
Confidence 3566777775444444333333567 999998 7666654432 222321 12211133358
Q ss_pred EEEeccccc--c---CCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 159 AIFMKWVLT--T---WTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 159 ~v~~~~vlh--~---~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
++++.--.- . .+-....++++.+.+.+++ |.+++.+...+.
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvpp 124 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPP 124 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSST
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEE
Confidence 877632111 1 0113467889999999998 677777776653
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.66 E-value=11 Score=32.13 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=53.4
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE---eCCCCCCC--CC-ccEEEeccccc
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI---GGDMFKSI--PA-ADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~---~~d~~~~~--p~-~D~v~~~~vlh 167 (254)
.++.+||=+|+| .|.++.++++.....+ +++.|. ++-++.+++..--.++ ..|+.+.. .. .|+|+-.-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAE-IVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcE-EEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 356788877764 6677778888764335 777886 6666655543211111 11111111 11 277764221
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
. ...++.+.++|+|||++++...
T Consensus 245 ---~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2456778889999999998764
No 327
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=75.55 E-value=13 Score=32.46 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec--h--HHHhhCCCC----CCcEEEeCCCCCCCCCc-cEEEeccccccCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL--P--EVVAEAPSI----PGVTHIGGDMFKSIPAA-DAIFMKWVLTTWT 170 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~--~~~~~~~~~----~~i~~~~~d~~~~~p~~-D~v~~~~vlh~~~ 170 (254)
+|+=++=..|.++..++...|. ...|. . ....+++.+ ..+++. +..+++|.. |+|++..-= +
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~----~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK---~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY----SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPK---T 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC----eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCC---C
Confidence 7999999999999999965442 22453 1 111122221 123333 444556665 988875432 1
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
-......|..+++.|+||+.+++.+..
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 356778999999999999998876654
No 328
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=75.47 E-value=22 Score=30.09 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=48.0
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHH-HhhCCCCCCcEEEeC-CCCCCCCCccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEV-VAEAPSIPGVTHIGG-DMFKSIPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~-~~~~~~~~~i~~~~~-d~~~~~p~~D~v~~~~vlh~~~~~ 172 (254)
++.+|+-||+| .|......+....... +++++. ++- .+.+++.+. ..... |..+.+..+|+|+..-.--.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~-V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~---- 250 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAE-ITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPH---- 250 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCc----
Confidence 57899999875 3444344444322234 778887 443 233333221 22221 11111344699887544321
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
...+++.+.+.. +++..+++|...|.+
T Consensus 251 -~~~~~~~~~~~~-~~~~~~viDlavPrd 277 (311)
T cd05213 251 -YAKIVERAMKKR-SGKPRLIVDLAVPRD 277 (311)
T ss_pred -hHHHHHHHHhhC-CCCCeEEEEeCCCCC
Confidence 123334433333 345566778877654
No 329
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.25 E-value=29 Score=28.88 Aligned_cols=151 Identities=9% Similarity=-0.008 Sum_probs=73.6
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------C------------CCcEEEeCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------I------------PGVTHIGGDMFKS 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~------------~~i~~~~~d~~~~ 153 (254)
..+|.=||+|.=..+....-...+.+ ++++|. ++.++.+.. . .++++. .|. +.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 35788888875443333322333557 889998 665544221 0 123332 232 23
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhh---hh--hcccch-Hhh--hhc--cc
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR---TR--ALLEGD-IFV--MTI--YR 223 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~---~~--~~~~~~-~~~--~~~--~~ 223 (254)
..++|+|+..-.-. .+-...+++++.+.++|+..|+......+...-.... .+ ..+.++ ... +.. ..
T Consensus 81 ~~~aD~Vieavpe~---~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g 157 (292)
T PRK07530 81 LADCDLVIEAATED---ETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRG 157 (292)
T ss_pred hcCCCEEEEcCcCC---HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCC
Confidence 44468888743110 1224577889999999887654322222110000000 00 001111 000 000 01
Q ss_pred cCceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 224 AKGNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 224 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
.++..-+.+....+++.-|-..+-+...+|+
T Consensus 158 ~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg~ 188 (292)
T PRK07530 158 IATDEATFEAAKEFVTKLGKTITVAEDFPAF 188 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEecCcCCh
Confidence 1122335667788999999888777766663
No 330
>PRK08507 prephenate dehydrogenase; Validated
Probab=74.18 E-value=15 Score=30.30 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=45.8
Q ss_pred eEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+|.=||+|. +.++..+.+.....+ ++++|. ++..+.+.+..-+.. ..+. ....++|+|++.- ++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~-v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vilav-----p~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISK-VYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLAI-----PVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEeC-----cHHHHHH
Confidence 466677663 445555554433345 788887 655554433221111 1121 1122358888743 5566778
Q ss_pred HHHHHHHhCCCCCEE
Q 025363 177 IMENCYKALPAGGKL 191 (254)
Q Consensus 177 il~~~~~~L~pgG~l 191 (254)
+++++.. ++|+..+
T Consensus 74 ~~~~l~~-l~~~~iv 87 (275)
T PRK08507 74 ILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHhc-cCCCCEE
Confidence 8888888 8877633
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.74 E-value=8.5 Score=32.53 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=58.9
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC---CCCccEEEeccccccCC
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS---IPAADAIFMKWVLTTWT 170 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~---~p~~D~v~~~~vlh~~~ 170 (254)
..+|.=||+| -|..+..++--. +.. ++.+|+ .+-+...... .|+...-.+...- ...+|++|..-.+--
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-- 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-- 243 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC--
Confidence 4678889988 466666666554 557 888998 5555554433 5666655444332 455699886544332
Q ss_pred HHHHHHHHHHHHHhCCCCCEEE
Q 025363 171 DDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~ 192 (254)
.+...-+.++.-+.||||+.++
T Consensus 244 akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEE
Confidence 2344567888899999999654
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=73.71 E-value=6.8 Score=27.87 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=52.9
Q ss_pred cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCC---CC----CCC-c-cEEEeccccccCCHHHHHH
Q 025363 107 SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMF---KS----IPA-A-DAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 107 G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~---~~----~p~-~-D~v~~~~vlh~~~~~~~~~ 176 (254)
|.|..+..+++... .+ +++.|. +.-.+.+++..--.+...+-. +. .+. . |+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~-vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AK-VIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SE-EEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS--------SHH
T ss_pred ChHHHHHHHHHHcC-CE-EEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC--------cHH
Confidence 46888999999887 77 899998 656666655421122222111 11 132 2 77765322 135
Q ss_pred HHHHHHHhCCCCCEEEEEcccc
Q 025363 177 IMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 177 il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.++...++|+|+|++++.-...
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 7889999999999999988765
No 333
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=73.53 E-value=19 Score=31.75 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEecc-ccc-cCC
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKW-VLT-TWT 170 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~-vlh-~~~ 170 (254)
...++|=||.| .|.....-+....--. +++... ....+.+++. +..+...+-... ++++|+|+++- .-| .++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~-i~IaNRT~erA~~La~~~-~~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKK-ITIANRTLERAEELAKKL-GAEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHh-CCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 57889999998 7776665444433234 676665 3333333332 244444333222 56679999753 222 233
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccccCCCCC
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEPVLPDDSN 203 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 203 (254)
.+ .+.+++++--+++++|...|.+..
T Consensus 255 ~~-------~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 255 RE-------MVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred HH-------HHHHHHhcccCeEEEEecCCCCCC
Confidence 33 444455433228999999886643
No 334
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=73.46 E-value=4.5 Score=35.02 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.8
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
.+-+...++|+|.|.|.++..+.-.+ ++. +.++|-
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y-~ls-V~aIeg 184 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGY-GLS-VKAIEG 184 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhcc-Cce-EEEecc
Confidence 35667899999999999999877766 567 888886
No 335
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=72.73 E-value=18 Score=27.35 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=41.0
Q ss_pred CCCCeEEEecCcccHHH-HHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEeccccccCCHH
Q 025363 96 KGVKRLVDVGGSAGDCL-RMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~-~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~~~ 172 (254)
..+.+|+=.|+|+...+ ...+..-+..- ..++|. |.=.-..-....|..+.-+.+.. .| |++++.. | .
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I-~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~p--d~vivla----w--~ 136 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLI-DYVVDDNPLKQGKYLPGTHIPIVSPEELKERKP--DYVIVLA----W--N 136 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS---EEES-GGGTTEE-TTT--EEEEGGG--SS----SEEEES-----G--G
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCccee-EEEEeCChhhcCcccCCCCCeECCHHHHhhCCC--CEEEEcC----h--h
Confidence 35688999998876654 33333334433 455665 32111111113466666554433 22 7665533 2 2
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 025363 173 ECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i 193 (254)
-..+|.+++++.++.||++++
T Consensus 137 y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 137 YKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp GHHHHHHHTHHHHHTT-EEEE
T ss_pred hHHHHHHHHHHHHhcCCEEEE
Confidence 235788999999999999987
No 336
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.60 E-value=25 Score=29.19 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=73.5
Q ss_pred eEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCCC
Q 025363 100 RLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFKS 153 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~~ 153 (254)
+|.=||+|. +..+..++++ +.+ ++++|. ++.++.+.+. .++++. .|..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQ-TTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh
Confidence 577788763 2233334433 456 888998 6666554321 123322 222222
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHh--------hhhccccC
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIF--------VMTIYRAK 225 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 225 (254)
..++|+|+..-.- +.+-...+++++.+.++|+..+.+.-...+...-............+. .+. ....
T Consensus 79 ~~~aD~Vi~avpe---~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lv-e~v~ 154 (288)
T PRK09260 79 VADADLVIEAVPE---KLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLV-ELIR 154 (288)
T ss_pred hcCCCEEEEeccC---CHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceE-EEeC
Confidence 4456988864321 112235678889899988776555333322110000000000000000 011 0112
Q ss_pred c---eecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 G---NHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
| ..-+.+....+++.-|-+.+.+.+.+|+
T Consensus 155 g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf 186 (288)
T PRK09260 155 GLETSDETVQVAKEVAEQMGKETVVVNEFPGF 186 (288)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 2 3335677888999999988888777774
No 337
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=72.39 E-value=5 Score=35.76 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=78.6
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC----
Q 025363 66 IPEMNGLMRKAMSGVSVPFMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---- 140 (254)
Q Consensus 66 ~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---- 140 (254)
.++.+..|+..|............+. ......+|-||-|.|.+...+....|..+ .+++.+ |++++.+...
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~~---~~~~~~~lvvg~ggG~l~sfl~~~~p~~~-i~~ve~dP~~l~va~q~f~f~ 342 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQK---LDTGGKQLVVGLGGGGLPSFLHMSLPKFQ-ITAVEIDPEMLEVATQYFGFM 342 (482)
T ss_pred CcccCcchhhhhhccceeccccCchh---ccccCcEEEEecCCCccccceeeecCccc-eeEEEEChhHhhccHhhhchh
Confidence 45566667777765444332222222 23356777788888999999888999888 888888 9999888764
Q ss_pred --CCcEEEeCCCCCCC-------CC--c-cEEEe----ccccccCC----HHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 141 --PGVTHIGGDMFKSI-------PA--A-DAIFM----KWVLTTWT----DDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 141 --~~i~~~~~d~~~~~-------p~--~-D~v~~----~~vlh~~~----~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.|..++-.|-.+.+ ++ . |+++. .. .|... .--+..+|..++.+|+|-|.++|.=..
T Consensus 343 q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 343 QSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred hhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 23333333332221 11 1 66664 22 33221 223568999999999999988664433
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=71.88 E-value=34 Score=25.71 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=35.3
Q ss_pred CCCeEEEecCcccHHH--HHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEec
Q 025363 97 GVKRLVDVGGSAGDCL--RMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~--~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~ 163 (254)
.+.+||=||||.=..- ..|++. +.. +++++ |+..+...+.+.+.+....+.+. +.++|+|++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~-V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAF-VTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCE-EEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEEC
Confidence 4678999998854442 334443 445 66665 33333322234566665555443 5556888873
No 339
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=71.84 E-value=33 Score=28.70 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC-------CCCC--ccEEEe
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK-------SIPA--ADAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~-------~~p~--~D~v~~ 162 (254)
.+.++.+||..|+| .|..+..+++.. +.+ ++..+. ++..+.+++. .++.+..+-.. ..+. .|+++-
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~-V~~~~~s~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAA-VIAVDIKEEKLELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 35667888888865 578888888876 456 777765 5555444332 12221111100 1111 277664
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.... ...++++.+.|+++|+++....
T Consensus 239 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVGT--------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEECC
Confidence 2211 2467888999999999988653
No 340
>PLN02494 adenosylhomocysteinase
Probab=71.57 E-value=14 Score=33.24 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=57.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEE
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIF 161 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~ 161 (254)
..+.+.+.-+..-.+.+|+=+|+| .|......++.+ +.+ ++++|. |.....+.. ....+. ++.+.++.+|+++
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~-VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVVI 314 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GAR-VIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIFV 314 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEEE
Confidence 455566654322457889999876 455555555555 567 888887 432222222 122222 2212245569988
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...--. .-+.+...+.||||+.|+..-.
T Consensus 315 ~tTGt~-------~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGNK-------DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCCc-------cchHHHHHhcCCCCCEEEEcCC
Confidence 622211 1234678889999999887654
No 341
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=71.50 E-value=42 Score=25.46 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=59.4
Q ss_pred CCCeEEEecCcccHHHHHHHH-HcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC--CCC----c-cEEEecccccc
Q 025363 97 GVKRLVDVGGSAGDCLRMILQ-KHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS--IPA----A-DAIFMKWVLTT 168 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~--~p~----~-D~v~~~~vlh~ 168 (254)
+..+|+-|||=+-. ..+.+ ..+..+ +.++|.+.--+... .. .|+--|..++ +|. . |+|++-=-+
T Consensus 25 ~~~~iaclstPsl~--~~l~~~~~~~~~-~~Lle~D~RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF-- 96 (162)
T PF10237_consen 25 DDTRIACLSTPSLY--EALKKESKPRIQ-SFLLEYDRRFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF-- 96 (162)
T ss_pred CCCEEEEEeCcHHH--HHHHhhcCCCcc-EEEEeecchHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC--
Confidence 45789999764444 44444 456667 89999854433321 22 5666677665 452 2 999985444
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
++.+-..++.+.++-+++++++++++...
T Consensus 97 l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 97 LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 45554557777777788999999886543
No 342
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=70.81 E-value=5.5 Score=33.57 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++....|+.+.++|+|||+|+|+.+..-
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 4567889999999999999999877543
No 343
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=70.49 E-value=9.9 Score=32.40 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC---CCcEEEeCCCCCCC----CC-c-cEEEe
Q 025363 94 GFKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI---PGVTHIGGDMFKSI----PA-A-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~---~~i~~~~~d~~~~~----p~-~-D~v~~ 162 (254)
.++++.+||=.| +|-|.++.+|+++..... ++....++-.+.+++. .-|.+...|+.+.. .. . |+|+-
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~-v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATV-VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcE-EEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 477899999998 578889999999986422 3333334333333333 23445555554432 22 2 88775
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
.-- ...+.+..+.|+++|+++.+-...
T Consensus 218 ~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 322 255777889999999999877654
No 344
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=69.80 E-value=39 Score=27.02 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred CCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC----CCC-ccEEEecc
Q 025363 95 FKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS----IPA-ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~----~p~-~D~v~~~~ 164 (254)
..++.+||..|+|+ |..+..+++... .+ +++.+. ++..+.++....-.+.. .+..+. ... .|+++...
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-AR-VIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-Ce-EEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 36788999999885 777777777754 56 777776 44443332221111111 011000 012 38877422
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
... ..+..+.+.|+++|+++.....
T Consensus 210 -----~~~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 210 -----GGP---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred -----CCH---HHHHHHHHhcccCCEEEEEccC
Confidence 111 3567788899999999876543
No 345
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.72 E-value=6.4 Score=32.99 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
++..+.|..+.++|+|||+|+|+.+..-+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 56789999999999999999998775443
No 346
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=69.61 E-value=42 Score=27.80 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=42.1
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCC-----CCccEEEeccccc
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSI-----PAADAIFMKWVLT 167 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~-----p~~D~v~~~~vlh 167 (254)
+++|+-||.|.....+.+.. .+.+..+|. +..++..+.+..-.+..+|+.+.. +..|+++..---.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 68999999999999988774 442567888 666655544411124556665541 2238888755433
No 347
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=69.48 E-value=13 Score=33.82 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC--------------C-------
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK--------------S------- 153 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~--------------~------- 153 (254)
+..+++=+|+| .|..+..+++.. +.. ++++|. ++.++.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~-V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAI-VRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 46899999987 456677777765 456 888998 7776666553 23343333211 0
Q ss_pred -----CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 154 -----IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 154 -----~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
..++|+++..-.+..- ....-+.++..+.||||+.++
T Consensus 240 ~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEE
Confidence 1234998765544321 122347788899999998754
No 348
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=69.40 E-value=34 Score=23.52 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=43.8
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCce------ecCHHHHHHH
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGN------HRTEQEFKQL 237 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~l 237 (254)
.+|-|++.++..++|+++...- .|.+++.= -|.. +. ...+...+- ..+++. ...++++.+.
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t--~~~~ifTf--AP~T---~~-L~~m~~iG~-----lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRT--RGSLIFTF--APRT---PL-LALMHAIGK-----LFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhc--cCcEEEEE--CCCC---HH-HHHHHHHhc-----cCCCCCCCCcEEEeCHHHHHHH
Confidence 4555788999999999998875 45555521 1111 11 111111110 012211 1257899999
Q ss_pred HHhCCCCeeeEEEc
Q 025363 238 GFFAGFPHLRLYRV 251 (254)
Q Consensus 238 l~~aGf~~~~~~~~ 251 (254)
++++||++.+...+
T Consensus 70 l~~~g~~~~r~~ri 83 (97)
T PF07109_consen 70 LAAAGWRIGRTERI 83 (97)
T ss_pred HHhCCCeeeecccc
Confidence 99999998876654
No 349
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=69.35 E-value=8 Score=29.36 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=51.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hH-HHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PE-VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~-~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||.|+=..+.++.-+-.++. +++-.. .+ -.+.+++. . |...+..+-...+|+|++ -.||+...
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~s~s~~~A~~~-G--f~v~~~~eAv~~aDvV~~-----L~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREGSASWEKAKAD-G--FEVMSVAEAVKKADVVML-----LLPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TTCHHHHHHHHT-T---ECCEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCCCcCHHHHHHC-C--CeeccHHHHHhhCCEEEE-----eCChHHHH
Confidence 57889999887666666655556767 765554 22 34444332 2 222222211233588887 24777767
Q ss_pred HHH-HHHHHhCCCCCEEEEEccc
Q 025363 176 LIM-ENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 176 ~il-~~~~~~L~pgG~l~i~d~~ 197 (254)
++. +++...|+||-.|++....
T Consensus 75 ~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHhhCCCCCEEEeCCcc
Confidence 777 8999999999999987644
No 350
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.27 E-value=5.8 Score=33.12 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.2
Q ss_pred HHHhhCCCC-CCcEEEeCCCCCCC---CCc--cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 132 EVVAEAPSI-PGVTHIGGDMFKSI---PAA--DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 132 ~~~~~~~~~-~~i~~~~~d~~~~~---p~~--D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
++-+.++.+ .||.++.+|+.+-+ |.+ |-|++..+=.-++|.+...++.++++-+.||.++++-...
T Consensus 297 ~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 297 GVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 333343333 68999999998763 333 9999988877788999999999999999999999885443
No 351
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=68.84 E-value=5.9 Score=31.20 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=34.6
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEA 137 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~ 137 (254)
+++.+++.+ -.++..|||-=||+|..+.+..+.. -+ ++++|+ ++..+.+
T Consensus 180 l~~~lI~~~--t~~gdiVlDpF~GSGTT~~aa~~l~--R~-~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 180 LIERLIKAS--TNPGDIVLDPFAGSGTTAVAAEELG--RR-YIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHHHH--S-TT-EEEETT-TTTHHHHHHHHTT---E-EEEEESSHHHHHHH
T ss_pred HHHHHHHhh--hccceeeehhhhccChHHHHHHHcC--Ce-EEEEeCCHHHHHHh
Confidence 466677766 3567899999999999999877763 34 899999 7666544
No 352
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=68.58 E-value=34 Score=29.98 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=43.8
Q ss_pred CeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC--CCcEEEeCCCCCC--C----CCccEEEe
Q 025363 99 KRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI--PGVTHIGGDMFKS--I----PAADAIFM 162 (254)
Q Consensus 99 ~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~--~~i~~~~~d~~~~--~----p~~D~v~~ 162 (254)
.+||=|||| -|......+.+..+.+ +++.|. ++-.+++... .++++...|..+. . .+.|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEE
Confidence 478889985 4555555555555567 999998 6777777554 5899999998776 2 22377765
No 353
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=68.10 E-value=31 Score=30.53 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHhhcCCCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEec
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 163 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~ 163 (254)
+.+.+..+..-++.+|+=+|+|. |......++.. +.+ ++++|. |.-.+.++.. ..... +..+....+|+|+..
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~-ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~a 264 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GAR-VIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVTT 264 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEEC
Confidence 34444443224578999999884 55555566655 457 888987 5555555442 22222 121113345998863
Q ss_pred cccccCCHHHHHHHHHH-HHHhCCCCCEEEEEc
Q 025363 164 WVLTTWTDDECKLIMEN-CYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~-~~~~L~pgG~l~i~d 195 (254)
-. ...++.. ..+.+|+||+++..-
T Consensus 265 tG--------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 265 TG--------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC--------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 21 1234554 488999999997765
No 354
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=67.91 E-value=45 Score=28.70 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=52.5
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC-CCCcEEEeCCCCCCCCC-ccEEEeccccccCCHHHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS-IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~-~~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~~~~~~ 174 (254)
.+++||=+|.-...+...|.. ...+ +...+........+. ..++.|- .++..+.+. .|++++..-= +..++
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~pk---~k~~~ 91 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLDA--ASVR-VHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWPK---NKQEA 91 (342)
T ss_pred CCCcEEEEcCcchhhHHhhhc--cceE-EehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECCC---CHHHH
Confidence 356788888777777776651 1222 222222222111111 1233332 223222333 4887774432 23567
Q ss_pred HHHHHHHHHhCCCCCEEEEEccc
Q 025363 175 KLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.-.|..+.+.|+|||.|++.-..
T Consensus 92 ~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 92 QFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred HHHHHHHHHhCCCCCEEEEEEec
Confidence 88999999999999999987643
No 355
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=67.86 E-value=7.3 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 175 KLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.+.+.+++++|||||.|++.-++-++
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCCc
Confidence 46788999999999999998777654
No 356
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.84 E-value=37 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCCeEEEecCcccHHHHH--HHHHcCCCCeEEEe--ec-hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEec
Q 025363 97 GVKRLVDVGGSAGDCLRM--ILQKHRFICEGINF--DL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~--l~~~~~~~~~~~~~--D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~ 163 (254)
.+.+||=||||.-..-.. |++. +.. ++++ +. +++.+.++ .++|+++..++... +..+++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~-VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCY-VYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCE-EEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 467899999998776533 3333 344 5544 55 55544433 36799988777543 5455777764
No 357
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=67.41 E-value=4.7 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.4
Q ss_pred ccCceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 223 RAKGNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 223 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
..+.+..+.+++.+.|.+|||...+-..|.+|
T Consensus 53 r~GaKH~~q~~Lnq~L~~Ag~~~LK~KEIaFf 84 (84)
T PF13319_consen 53 RIGAKHFDQEELNQRLIDAGWEGLKDKEIAFF 84 (84)
T ss_pred HhccccCCHHHHHHHHHHcCccccchhhhccC
Confidence 35667789999999999999998887776654
No 358
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=67.37 E-value=6.2 Score=33.31 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.9
Q ss_pred CeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHh
Q 025363 99 KRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVA 135 (254)
Q Consensus 99 ~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~ 135 (254)
.+|+-||.| .|-...-++.++|+++ ++++|. .+-+.
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~-vtvvd~s~~ri~ 40 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIE-VTVVDISVPRIN 40 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceE-EEEEecCchHhh
Confidence 368889988 4556666778899999 999998 44333
No 359
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=67.00 E-value=28 Score=30.15 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCCCCeEEEecCcccHHHHHHHHHcC
Q 025363 94 GFKGVKRLVDVGGSAGDCLRMILQKHR 120 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~G~~~~~l~~~~~ 120 (254)
..+++.+|||..+..|.=+.++++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~ 178 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALH 178 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHh
Confidence 478999999999999999988888743
No 360
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.99 E-value=19 Score=28.45 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=38.2
Q ss_pred CCeEEEecCcccHHHH--HHHHHcCCCCeEEEeec---hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEec
Q 025363 98 VKRLVDVGGSAGDCLR--MILQKHRFICEGINFDL---PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 163 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~--~l~~~~~~~~~~~~~D~---~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~ 163 (254)
+.+||=||||.-.... .|++. +.. +++++. ++..+.+ +..++.++.+++... +..+|+|++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~-VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQ-LRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCE-EEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 5689999998654432 23333 455 777764 2333322 235899998887644 5556887764
No 361
>PRK06545 prephenate dehydrogenase; Validated
Probab=66.15 E-value=33 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHH-hCCCCC
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYK-ALPAGG 189 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~-~L~pgG 189 (254)
.++|+|++.- ++.....+++++.. .++|+.
T Consensus 59 ~~aDlVilav-----P~~~~~~vl~~l~~~~l~~~~ 89 (359)
T PRK06545 59 AEADLIVLAV-----PVDATAALLAELADLELKPGV 89 (359)
T ss_pred cCCCEEEEeC-----CHHHHHHHHHHHhhcCCCCCc
Confidence 3459988744 44566788888887 478773
No 362
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=65.77 E-value=8.1 Score=32.45 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
++....|..+..+|+|||+|+|+.+..-+
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 46778999999999999999998775443
No 363
>PTZ00357 methyltransferase; Provisional
Probab=65.34 E-value=18 Score=34.11 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=81.8
Q ss_pred hhhhHHHHHhCCCCChhhhhcCCCcccccccCchHHHHHHHHHhcCCchhHH------------HH------HhhcCCCC
Q 025363 35 MWPLVHKAILDPTIEPFLKVHGEPAYSYYGKIPEMNGLMRKAMSGVSVPFMT------------SV------LEGYNGFK 96 (254)
Q Consensus 35 ~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~i------~~~~~~~~ 96 (254)
++....+.|..+- .|......+..||.+++|+.-=..|.+++......+.. .+ ++..+.-.
T Consensus 618 ~~esYeD~LQ~PL-QPLsDNLES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~ 696 (1072)
T PTZ00357 618 VFASFEGQLQLPL-QPLSHHLSSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPS 696 (1072)
T ss_pred hhhhhhhhhcccC-CchhhccchhhHHHHcCCcHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 3444444454332 22222223455778888887667777776543221110 00 01111001
Q ss_pred ---CCCeEEEecCcccHHHHHHHHHcCC----CCeEEEeec-hHH----HhhC-C--CC--------CCcEEEeCCCCCC
Q 025363 97 ---GVKRLVDVGGSAGDCLRMILQKHRF----ICEGINFDL-PEV----VAEA-P--SI--------PGVTHIGGDMFKS 153 (254)
Q Consensus 97 ---~~~~vlDvG~G~G~~~~~l~~~~~~----~~~~~~~D~-~~~----~~~~-~--~~--------~~i~~~~~d~~~~ 153 (254)
....|+-+|+|-|-+....+++... ++ +.+++- |.. +..- . .. ++|+++..||-+.
T Consensus 697 ~d~~~vVImVVGAGRGPLVdraLrAak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 697 PDERTLHLVLLGCGRGPLIDECLHAVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred CCCceEEEEEEcCCccHHHHHHHHHHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 1245899999999999888887542 23 566664 441 1111 1 11 3589999999875
Q ss_pred -CC-------------CccEEEeccccccCCHHH-HHHHHHHHHHhCCC----CCE
Q 025363 154 -IP-------------AADAIFMKWVLTTWTDDE-CKLIMENCYKALPA----GGK 190 (254)
Q Consensus 154 -~p-------------~~D~v~~~~vlh~~~~~~-~~~il~~~~~~L~p----gG~ 190 (254)
.+ ..|++|. ..|--|.|.+ ..+.|.-+.+.||+ +|.
T Consensus 776 ~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 776 ATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 22 1488775 3343344432 34566677777765 665
No 364
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.93 E-value=31 Score=30.58 Aligned_cols=103 Identities=14% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCCeEEEec-CcccH------HHHHHHHHcCCCCeEEEeec--hHHHhhCCCC---CCcEEEeCCCCCC-C---------
Q 025363 97 GVKRLVDVG-GSAGD------CLRMILQKHRFICEGINFDL--PEVVAEAPSI---PGVTHIGGDMFKS-I--------- 154 (254)
Q Consensus 97 ~~~~vlDvG-~G~G~------~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~---~~i~~~~~d~~~~-~--------- 154 (254)
+...|+=+| -|+|- ++..+.++....- ++..|. |..+++.+.. -+|.|...+-..+ .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceE-EEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 356677776 24443 3444444322333 577786 8777776653 4566665432222 1
Q ss_pred --CC-ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 155 --PA-ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 155 --p~-~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
.. .|++|+--.=.+--|++..+-+++++++++|.=.|+++|...-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 11 28888733222223678888999999999999999999987653
No 365
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=64.71 E-value=6 Score=28.55 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeEEE
Q 025363 176 LIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
++++++++.++|||.+.-.. ....++.-|+++||.+.+...
T Consensus 71 e~~~~l~~~~~~~~~l~Tys----------------------------------~a~~Vr~~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYS----------------------------------SAGAVRRALQQAGFEVEKVPG 111 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES------------------------------------BHHHHHHHHHCTEEEEEEE-
T ss_pred HHHHHHHHHhCCCcEEEEee----------------------------------chHHHHHHHHHcCCEEEEcCC
Confidence 68999999999999875411 112367889999999766543
No 366
>PRK06223 malate dehydrogenase; Reviewed
Probab=63.40 E-value=50 Score=27.69 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=48.2
Q ss_pred CeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhh-CCC---C-----CCcEEEe-CCCCCCCCCccEEEecccc
Q 025363 99 KRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAE-APS---I-----PGVTHIG-GDMFKSIPAADAIFMKWVL 166 (254)
Q Consensus 99 ~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~-~~~---~-----~~i~~~~-~d~~~~~p~~D~v~~~~vl 166 (254)
.+|.=||+|. |......+......+ ++++|. ++.... ..+ . ...++.. .|. +.+.++|+|++.--.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~e-v~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 4788899987 665555554433126 888997 433211 110 0 1223332 343 335667998875321
Q ss_pred cc---C--------CHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 167 TT---W--------TDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 167 h~---~--------~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-. . +-+-..++++++.+.. |.+++++.
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~ 118 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV 118 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 10 0 0123455666666665 66766665
No 367
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=63.27 E-value=23 Score=30.32 Aligned_cols=88 Identities=14% Similarity=0.036 Sum_probs=47.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeech--HHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP--EVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~--~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+.+|.=||+|.=..+....-+-.+.+ +++.+.+ ...+.++. ..+. ..|..+....+|+|++. .++....
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~-Vvv~~r~~~~s~~~A~~-~G~~--~~s~~eaa~~ADVVvLa-----VPd~~~~ 87 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVD-VVVGLREGSKSWKKAEA-DGFE--VLTVAEAAKWADVIMIL-----LPDEVQA 87 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCE-EEEEECCchhhHHHHHH-CCCe--eCCHHHHHhcCCEEEEc-----CCHHHHH
Confidence 56788888775333222211223446 6666542 22222222 2222 22322224446998873 3555557
Q ss_pred HHH-HHHHHhCCCCCEEEEE
Q 025363 176 LIM-ENCYKALPAGGKLIAC 194 (254)
Q Consensus 176 ~il-~~~~~~L~pgG~l~i~ 194 (254)
.++ +++...|+||..|.+.
T Consensus 88 ~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 88 EVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred HHHHHHHHhcCCCCCEEEEC
Confidence 777 7788899998877554
No 368
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=63.06 E-value=41 Score=27.81 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=46.2
Q ss_pred CeEEEecCcc--cHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 99 KRLVDVGGSA--GDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 99 ~~vlDvG~G~--G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
.+|.=||||. +..+..+++.. +..+ +++.|. ++-.+...+...+.. ..|..+...++|+|++.- .+..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~~~~aDiIiLav-----kP~~ 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVSNLKNASDKYGITI-TTNNNEVANSADILILSI-----KPDL 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHHHHHHHHHhcCcEE-eCCcHHHHhhCCEEEEEe-----ChHH
Confidence 3577788773 33444444432 2235 788887 554444332112332 122211133459988733 4567
Q ss_pred HHHHHHHHHHhCCCCC
Q 025363 174 CKLIMENCYKALPAGG 189 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG 189 (254)
...+++++...++++.
T Consensus 76 ~~~vl~~l~~~~~~~~ 91 (272)
T PRK12491 76 YSSVINQIKDQIKNDV 91 (272)
T ss_pred HHHHHHHHHHhhcCCc
Confidence 7888999988887664
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.97 E-value=44 Score=27.75 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=49.4
Q ss_pred CeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------------------CCcEEEeCCCCCC
Q 025363 99 KRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------------------------PGVTHIGGDMFKS 153 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------------------~~i~~~~~d~~~~ 153 (254)
.+|.=||+|.=..+.+..-...+.+ ++++|. ++.++.+++. .++.+. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 4677888875443333332333556 889998 6554443321 133322 222222
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
...+|+|+..-. .+ .+-...+++++.+.++|+..|..
T Consensus 82 ~~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 VKDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred hcCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 344598887432 11 13456788999998887765544
No 370
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=62.64 E-value=27 Score=26.91 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-----------------------CCcEEEeCCCCCCCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-----------------------PGVTHIGGDMFKSIP 155 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-----------------------~~i~~~~~d~~~~~p 155 (254)
+|.=||+|+=...++..-...+.+ ++++|. ++.++.+++. .++++. .|+.+-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHHh-
Confidence 355677775444444444444778 999998 7665554321 356643 2332223
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
++|+|+-.- .-++ +.-.++++++.+.++|+..|......++
T Consensus 78 ~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 78 DADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred hhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 458887533 2222 4457899999999999988777654443
No 371
>PTZ00117 malate dehydrogenase; Provisional
Probab=62.43 E-value=57 Score=27.68 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=50.5
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhh-------CCCC--CCcEEEe-CCCCCCCCCccEEEecc
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAE-------APSI--PGVTHIG-GDMFKSIPAADAIFMKW 164 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~-------~~~~--~~i~~~~-~d~~~~~p~~D~v~~~~ 164 (254)
+..+|.=||+|+ |.....++....-.. ++++|. ++..+. +... ....+.. .|.. .+.++|+|+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 356899999988 766666555543246 888897 322111 1110 1233332 3332 456679988755
Q ss_pred cccc---CCH--------HHHHHHHHHHHHhCCCCCEEEEE
Q 025363 165 VLTT---WTD--------DECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 165 vlh~---~~~--------~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-.-. ++. +-..++.+++.+. .|.+.+++.
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv 121 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV 121 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3321 111 2233555555555 477766654
No 372
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=62.21 E-value=36 Score=28.38 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=43.3
Q ss_pred CCCeEEEecCcccHHHHHHHHHcCCCC---eEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 97 GVKRLVDVGGSAGDCLRMILQKHRFIC---EGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~l~~~~~~~~---~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
+...||=+|++.|.....|.+.+++.. +.+.+|........++...|+++.. + ++++
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~-f------------------ftee- 117 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR-F------------------FTEE- 117 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------HH-
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh-h------------------CCHH-
Confidence 346899999999999999999998744 1677786333333433344555432 1 2333
Q ss_pred HHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 174 CKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
.++++++.+.+ ..|+|.|....++
T Consensus 118 ---~~~~~~~~~~~-~illISDIRS~~~ 141 (294)
T PF01358_consen 118 ---YARRLRDKLNL-KILLISDIRSGDP 141 (294)
T ss_dssp ---HHHHHHHHHTT-EEEEEE-------
T ss_pred ---HHHHHHhhcCC-CeEEEEecccCCC
Confidence 34566666666 7788888765544
No 373
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=62.06 E-value=37 Score=28.97 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=52.8
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec----hHHHhhCCCCCCcEEEe---CCCCC--CCCCccEEEeccc
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL----PEVVAEAPSIPGVTHIG---GDMFK--SIPAADAIFMKWV 165 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~----~~~~~~~~~~~~i~~~~---~d~~~--~~p~~D~v~~~~v 165 (254)
.++.+||=+|+| .|.++..+++.. +.+ +++++. +.-.+.+++. ...++. .+..+ .....|+|+-.-.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~-vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFE-VYVLNRRDPPDPKADIVEEL-GATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCe-EEEEecCCCCHHHHHHHHHc-CCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 456788888865 577888888876 447 888874 3444333332 122221 11100 0111377664321
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. ...+....++|++||++++.....
T Consensus 248 -----~---~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 248 -----V---PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred -----C---HHHHHHHHHHccCCcEEEEEecCC
Confidence 1 236778889999999998876543
No 374
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=61.59 E-value=6.7 Score=32.49 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHH
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVV 134 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~ 134 (254)
-.+++|||+|||+|--.+....... .. +...|. .+++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~-~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VS-VHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ce-eeeEecchhhe
Confidence 3578999999999998887776642 44 666676 4444
No 375
>PRK07680 late competence protein ComER; Validated
Probab=60.49 E-value=43 Score=27.54 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred eEEEecCcc--cHHHHHHHHHcC-C-CCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKHR-F-ICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~~-~-~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
+|.=||+|. +.++..+.+... . .. ++++|. ++-.+..... ..+... .|..+....+|+|++.- ++..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~-v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~ 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQ-LTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLD 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHH
Confidence 456677764 334444444421 1 24 677887 4443333221 234332 22211133458887633 5667
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 025363 174 CKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i 193 (254)
...+++++...++++..++.
T Consensus 75 ~~~vl~~l~~~l~~~~~iis 94 (273)
T PRK07680 75 IYPLLQKLAPHLTDEHCLVS 94 (273)
T ss_pred HHHHHHHHHhhcCCCCEEEE
Confidence 78889999888888765443
No 376
>PRK08818 prephenate dehydrogenase; Provisional
Probab=59.85 E-value=36 Score=29.65 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=42.4
Q ss_pred CCeEEEecC-c--ccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGG-S--AGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~-G--~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
..+|.=||+ | .|.++..|.+. .+.+ ++++|... .. ..+..+...++|+|++.- |....
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~-~~~~-V~g~D~~d---------~~---~~~~~~~v~~aDlVilav-----Pv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR-MQLE-VIGHDPAD---------PG---SLDPATLLQRADVLIFSA-----PIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CCCE-EEEEcCCc---------cc---cCCHHHHhcCCCEEEEeC-----CHHHH
Confidence 357777876 5 34444555444 3557 88888520 00 001111134469988754 44667
Q ss_pred HHHHHHHHHh---CCCCC
Q 025363 175 KLIMENCYKA---LPAGG 189 (254)
Q Consensus 175 ~~il~~~~~~---L~pgG 189 (254)
.++++++... |+||.
T Consensus 65 ~~~l~~l~~~~~~l~~~~ 82 (370)
T PRK08818 65 AALIEEYVALAGGRAAGQ 82 (370)
T ss_pred HHHHHHHhhhhcCCCCCe
Confidence 7888988876 78875
No 377
>PRK07574 formate dehydrogenase; Provisional
Probab=59.37 E-value=33 Score=30.08 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=45.4
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeechH-HHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDLPE-VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||.|. |......++.+ +.+ ++++|... ..+..+. ..+.+. .++.+-++.+|+|++.--+. ++..
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~-V~~~dr~~~~~~~~~~-~g~~~~-~~l~ell~~aDvV~l~lPlt----~~T~ 263 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVK-LHYTDRHRLPEEVEQE-LGLTYH-VSFDSLVSVCDVVTIHCPLH----PETE 263 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEECCCCCchhhHhh-cCceec-CCHHHHhhcCCEEEEcCCCC----HHHH
Confidence 45677777653 54444444443 567 88888622 1111111 122221 12222256679998866654 3334
Q ss_pred HHH-HHHHHhCCCCCEEE
Q 025363 176 LIM-ENCYKALPAGGKLI 192 (254)
Q Consensus 176 ~il-~~~~~~L~pgG~l~ 192 (254)
.++ ++....||||..|+
T Consensus 264 ~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLV 281 (385)
T ss_pred HHhCHHHHhcCCCCcEEE
Confidence 444 45777788876544
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=59.29 E-value=93 Score=26.27 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=54.1
Q ss_pred CCCCCCeEEEecC-cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCC-ccEEEeccccccCC
Q 025363 94 GFKGVKRLVDVGG-SAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWT 170 (254)
Q Consensus 94 ~~~~~~~vlDvG~-G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~-~D~v~~~~vlh~~~ 170 (254)
...++.+||=.|+ +.|..+..+++.. +.+ ++..+. ++-.+.+++.. .+.+ .|..+..++ .|+++.....
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~-vi~~~~~~~~~~~a~~~G-a~~v-i~~~~~~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ-GAT-VHVMTRGAAARRLALALG-AASA-GGAYDTPPEPLDAAILFAPA---- 233 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC-CCe-EEEEeCChHHHHHHHHhC-Ccee-ccccccCcccceEEEECCCc----
Confidence 3667888988885 4666777777775 456 777776 55555554431 1111 111111112 3765532211
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 171 DDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 171 ~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
...+....++|++||++++.-.
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 1357888899999999988765
No 379
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=58.55 E-value=55 Score=27.05 Aligned_cols=89 Identities=9% Similarity=0.063 Sum_probs=48.0
Q ss_pred CCeEEEecCcc--cHHHHHHHHHc--CCCCeEEEeec-h-HHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCH
Q 025363 98 VKRLVDVGGSA--GDCLRMILQKH--RFICEGINFDL-P-EVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD 171 (254)
Q Consensus 98 ~~~vlDvG~G~--G~~~~~l~~~~--~~~~~~~~~D~-~-~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~ 171 (254)
.++|.=||+|. +..+..+++.. +..+ ++++|. + ...+.......++.. .|..+....+|+|++. .++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~-v~v~~r~~~~~~~~l~~~~g~~~~-~~~~e~~~~aDvVila-----v~p 75 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQ-ITVSNRSNETRLQELHQKYGVKGT-HNKKELLTDANILFLA-----MKP 75 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCCHHHHHHHHHhcCceEe-CCHHHHHhcCCEEEEE-----eCH
Confidence 35777787763 23444444442 2234 777776 3 343333222234322 2221112345988873 355
Q ss_pred HHHHHHHHHHHHhCCCCCEEEE
Q 025363 172 DECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i 193 (254)
.+..++++.+...++++..++.
T Consensus 76 ~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 76 KDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred HHHHHHHHHHHhhcCCCCEEEE
Confidence 6677888999888887765554
No 380
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=58.39 E-value=81 Score=26.49 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=49.7
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCCC--CC-ccEEEecccccc
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKSI--PA-ADAIFMKWVLTT 168 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~~--p~-~D~v~~~~vlh~ 168 (254)
++.+||-.|+|. |..+..++++..-.+ +++.+. ++..+.+++...-.++.. ++.+.. .. .|+++-....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~-v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAE-IVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcE-EEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 678888888765 777778888763225 667665 444443322211111111 110111 12 2777643221
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
...++.+.+.|+++|+++...
T Consensus 242 ------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ------HHHHHHHHHHHhcCCEEEEEe
Confidence 134678889999999998764
No 381
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=58.31 E-value=11 Score=30.52 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=46.0
Q ss_pred HHHHHhhcCCCCCCC--eEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhh-CC-------C---C-----CCcEEE
Q 025363 85 MTSVLEGYNGFKGVK--RLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAE-AP-------S---I-----PGVTHI 146 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~-~~-------~---~-----~~i~~~ 146 (254)
.+.++++. +.+++. +|||.=+|-|.-+.-++.. +.+ +++++...++.. .+ . . .||+++
T Consensus 62 ~~~l~kA~-Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 62 GDPLAKAV-GLKPGMRPSVLDATAGLGRDAFVLASL--GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp GSHHHHHT-T-BTTB---EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred ccHHHHHh-CCCCCCCCEEEECCCcchHHHHHHHcc--CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 35567777 366553 9999999999999887754 567 999997333221 11 1 1 489999
Q ss_pred eCCCCCCCC--C-c-cEEEecccc
Q 025363 147 GGDMFKSIP--A-A-DAIFMKWVL 166 (254)
Q Consensus 147 ~~d~~~~~p--~-~-D~v~~~~vl 166 (254)
.+|..+.++ . . |+|++-=.+
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE--S-
T ss_pred cCCHHHHHhhcCCCCCEEEECCCC
Confidence 999988743 2 2 999884444
No 382
>PLN03139 formate dehydrogenase; Provisional
Probab=57.85 E-value=28 Score=30.49 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred CCeEEEecCcccHHHHHHHHHc--CCCCeEEEeechHH-HhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH--RFICEGINFDLPEV-VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~-~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
+++|.=||. |..+..+++.. .+.+ ++++|.... .+.... ..+.+. .++.+-++.+|+|++.--++ ++.
T Consensus 199 gktVGIVG~--G~IG~~vA~~L~afG~~-V~~~d~~~~~~~~~~~-~g~~~~-~~l~ell~~sDvV~l~lPlt----~~T 269 (386)
T PLN03139 199 GKTVGTVGA--GRIGRLLLQRLKPFNCN-LLYHDRLKMDPELEKE-TGAKFE-EDLDAMLPKCDVVVINTPLT----EKT 269 (386)
T ss_pred CCEEEEEee--cHHHHHHHHHHHHCCCE-EEEECCCCcchhhHhh-cCceec-CCHHHHHhhCCEEEEeCCCC----HHH
Confidence 467777764 44555444442 3567 888886221 111111 122221 12222256679998865543 233
Q ss_pred HHHH-HHHHHhCCCCCEEE
Q 025363 175 KLIM-ENCYKALPAGGKLI 192 (254)
Q Consensus 175 ~~il-~~~~~~L~pgG~l~ 192 (254)
..++ ++..+.||||..|+
T Consensus 270 ~~li~~~~l~~mk~ga~lI 288 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIV 288 (386)
T ss_pred HHHhCHHHHhhCCCCeEEE
Confidence 3333 56777888876544
No 383
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=57.57 E-value=6.9 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 172 DECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 172 ~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
++....|.++..+|+|||+|+|+.+..
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 567789999999999999999987643
No 384
>PRK11524 putative methyltransferase; Provisional
Probab=57.35 E-value=12 Score=31.10 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCEEEEE
Q 025363 174 CKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i~ 194 (254)
....++.++++|||||.+++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEE
Confidence 357899999999999999875
No 385
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=57.07 E-value=49 Score=29.27 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=47.7
Q ss_pred CeEEEecCcccHHH--HHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC---------------CCCCCCCccEE
Q 025363 99 KRLVDVGGSAGDCL--RMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD---------------MFKSIPAADAI 160 (254)
Q Consensus 99 ~~vlDvG~G~G~~~--~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d---------------~~~~~p~~D~v 160 (254)
.+|.=||.|.-... ..|+++ +-+ ++++|. ++.++.... ..+.+...+ +.++...+|+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~-V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQ-VIGVDINQHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCE-EEEEeCCHHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 46777777744333 334443 346 899998 666655332 111111000 00112235887
Q ss_pred Eeccccc-----cCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 161 FMKWVLT-----TWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 161 ~~~~vlh-----~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
++.---- ...-.....+++.+.+.+++|..+++...
T Consensus 80 ii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 80 LIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7633220 00114566778889999988665544433
No 386
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=56.97 E-value=34 Score=29.27 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeech-HHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDLP-EVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~~-~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||.| -|......++. .+.+ +++.+.+ ...+.+.. ..+.+ .+..+-.+.+|+|++.-. +++..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d-~G~~-ViV~~r~~~s~~~A~~-~G~~v--~sl~Eaak~ADVV~llLP-----d~~t~ 85 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRD-SGVE-VVVGVRPGKSFEVAKA-DGFEV--MSVSEAVRTAQVVQMLLP-----DEQQA 85 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH-CcCE-EEEEECcchhhHHHHH-cCCEE--CCHHHHHhcCCEEEEeCC-----ChHHH
Confidence 6778888765 33333333333 3567 8777653 22222221 22322 233222455699887543 23334
Q ss_pred HHH-HHHHHhCCCCCEEEEEcc
Q 025363 176 LIM-ENCYKALPAGGKLIACEP 196 (254)
Q Consensus 176 ~il-~~~~~~L~pgG~l~i~d~ 196 (254)
.++ +.+...||||..|++...
T Consensus 86 ~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 86 HVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred HHHHHHHHhcCCCCCEEEECCC
Confidence 555 579999999998887654
No 387
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=56.88 E-value=29 Score=32.42 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=53.2
Q ss_pred CeEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~ 168 (254)
.+|+=+| .|..+..+++.. .+.+ ++++|. |+.++.+++ .....+.||..++ + .++|++++.. .
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~- 473 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC--N- 473 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C-
Confidence 3555555 455555555432 2456 899998 887777765 4677889999876 2 2247666522 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+++++..+...+++ +.|..+++.
T Consensus 474 -d~~~n~~i~~~~r~-~~p~~~Iia 496 (601)
T PRK03659 474 -EPEDTMKIVELCQQ-HFPHLHILA 496 (601)
T ss_pred -CHHHHHHHHHHHHH-HCCCCeEEE
Confidence 24555566666555 667877776
No 388
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.76 E-value=29 Score=31.99 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred CeEEEecCcccHHHHHHHHHcC--CCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--CC-----CccEEEecccccc
Q 025363 99 KRLVDVGGSAGDCLRMILQKHR--FICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--IP-----AADAIFMKWVLTT 168 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~--~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~p-----~~D~v~~~~vlh~ 168 (254)
.+++=+ |.|..+..+++... +.. ++++|. ++..+.+++ ..+..+.||..++ +. ++|.++..- .
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--~- 490 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTI--P- 490 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEc--C-
Confidence 344544 55556666666532 456 899998 777777765 5688999999886 22 247554421 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
+|++...+...+++ +.|.-+++..
T Consensus 491 -~~~~~~~iv~~~~~-~~~~~~iiar 514 (558)
T PRK10669 491 -NGYEAGEIVASARE-KRPDIEIIAR 514 (558)
T ss_pred -ChHHHHHHHHHHHH-HCCCCeEEEE
Confidence 23444445555544 5677777653
No 389
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=56.49 E-value=21 Score=26.64 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeechH-HHhhCCCCCCcEEEeCCCCCCCCC-----c--cEEEeccccccC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVAEAPSIPGVTHIGGDMFKSIPA-----A--DAIFMKWVLTTW 169 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~i~~~~~d~~~~~p~-----~--D~v~~~~vlh~~ 169 (254)
..-|+|+|=|.|..=..+.+.+|+-+ +.++|..- .-..... +.=.++.||+.+..|. . -++..-.-.|+-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR~l~~hp~~~P-~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~ 106 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRR-IYVFDRALACHPSSTP-PEEDLILGDIRETLPALARFGAGAALAHADIGTGDK 106 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS--EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-H
T ss_pred CCceEEeccCCCccHHHHHHhCCCCe-EEEEeeecccCCCCCC-chHheeeccHHHHhHHHHhcCCceEEEEeecCCCCc
Confidence 36899999999999999999999988 99999521 1111111 3345777887766432 1 333333333321
Q ss_pred C--HHHHHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 170 T--DDECKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 170 ~--~~~~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
. +..+..+-.-+..+|.|||.++......
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 1 1122233344566788999988766544
No 390
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=56.34 E-value=85 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 230 TEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 230 t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
+.+...++++..|...+.+.+.+|+
T Consensus 166 ~~~~~~~~~~~lgk~~v~v~d~pgf 190 (291)
T PRK06035 166 TFNTTVELSKKIGKIPIEVADVPGF 190 (291)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCe
Confidence 3556778889999999888877774
No 391
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=55.69 E-value=1.2e+02 Score=26.08 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC----CCC-ccEEEecc
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS----IPA-ADAIFMKW 164 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~----~p~-~D~v~~~~ 164 (254)
..++.+||=.|+| .|..+..+++.....+ +++.|. ++-.+.+++..--.++. .|+.+. .+. .|+++-.-
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~-Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQ-VVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 5667788778764 5667777787764335 777776 55555444321111111 111111 111 27776421
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. . ...++...++|+++|++++....
T Consensus 268 G-----~---~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 268 G-----S---VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred C-----C---hHHHHHHHHHHhcCCEEEEEccC
Confidence 1 1 14567778899999999887643
No 392
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=55.65 E-value=20 Score=27.10 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 173 ECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
--..+++-+++.|.|||+|+| +.+ .+. . ...++. .|.......+-..|.++||+.++-
T Consensus 64 ~E~~l~~~~~~~l~pg~~lfV-eY~-~D~----e--------T~~~L~----~G~pp~~TrLG~~Ll~~GFtwfKd 121 (170)
T PF06557_consen 64 LEDELYKLFSRYLEPGGRLFV-EYV-EDR----E--------TRRQLQ----RGVPPAETRLGFSLLKAGFTWFKD 121 (170)
T ss_dssp HHHHHHHHHHTT----SEEEE-E-T-T-H----H--------HHHHHH----TT--GGGSHHHHHHHTTT--EEEE
T ss_pred HHHHHHHHHHHHhhhcCeEEE-EEe-cCH----H--------HHHHHH----cCCCcccchhHHHHHhCCcEEEee
Confidence 336899999999999999988 222 111 0 011111 122233345667888899987653
No 393
>PRK11524 putative methyltransferase; Provisional
Probab=55.54 E-value=20 Score=29.81 Aligned_cols=51 Identities=6% Similarity=-0.091 Sum_probs=37.9
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS 139 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~ 139 (254)
+++.++..+ -.++..|||-=+|+|..+.+..+. +-+ .+++|+ ++..+.++.
T Consensus 197 L~erlI~~~--S~~GD~VLDPF~GSGTT~~AA~~l--gR~-~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 197 LLKRIILAS--SNPGDIVLDPFAGSFTTGAVAKAS--GRK-FIGIEINSEYIKMGLR 248 (284)
T ss_pred HHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHc--CCC-EEEEeCCHHHHHHHHH
Confidence 455566655 356889999999999999876666 334 899998 777766654
No 394
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=54.31 E-value=21 Score=28.28 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHcCC--CCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHHHHHH
Q 025363 107 SAGDCLRMILQKHRF--ICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCY 182 (254)
Q Consensus 107 G~G~~~~~l~~~~~~--~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~ 182 (254)
|+|.....+++++-. .+ +++-.. |+-++.+.+........+...+-...+|+|++.--++ ....+++.++
T Consensus 8 GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-----a~~~v~~~l~ 81 (211)
T COG2085 8 GTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-----AIPDVLAELR 81 (211)
T ss_pred ccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-----HHHhHHHHHH
Confidence 677777777776532 23 444422 5555444433222233322221133359999866554 4467888999
Q ss_pred HhCCCCCEEEEEccccC
Q 025363 183 KALPAGGKLIACEPVLP 199 (254)
Q Consensus 183 ~~L~pgG~l~i~d~~~~ 199 (254)
..+. |+++| |...|
T Consensus 82 ~~~~--~KIvI-D~tnp 95 (211)
T COG2085 82 DALG--GKIVI-DATNP 95 (211)
T ss_pred HHhC--CeEEE-ecCCC
Confidence 9886 88777 44443
No 395
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=53.47 E-value=1.3e+02 Score=25.04 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCc-EEEeCCCCC-----CCC-C-ccEEEec
Q 025363 94 GFKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGV-THIGGDMFK-----SIP-A-ADAIFMK 163 (254)
Q Consensus 94 ~~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i-~~~~~d~~~-----~~p-~-~D~v~~~ 163 (254)
...++.+||-+|+| .|..+..+++...--. +++.+. ++..+.+++. .+ .++..+-.+ ..+ . .|+++-.
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~-v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASR-VTVAEPNEEKLELAKKL-GATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcE-EEEECCCHHHHHHHHHh-CCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 35677899998865 4667777787764222 455554 5544443322 12 122111110 001 2 3887742
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.. . ...+..+.+.|+++|+++....
T Consensus 234 ~~----~----~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG----V----PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC----C----hHHHHHHHHHHhcCCEEEEEec
Confidence 11 1 2457778899999999987654
No 396
>PRK08655 prephenate dehydrogenase; Provisional
Probab=53.37 E-value=58 Score=29.07 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=42.7
Q ss_pred eEEEec-Cc-ccHHHHHHHHHcCCCCeEEEeec-hHHH-hhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 100 RLVDVG-GS-AGDCLRMILQKHRFICEGINFDL-PEVV-AEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 100 ~vlDvG-~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~-~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+|.=|| +| -|......+... +.. ++++|. ++.. +.+.+ ..+.+ ..+..+....+|+|++.- +.....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-G~~-V~v~~r~~~~~~~~a~~-~gv~~-~~~~~e~~~~aDvVIlav-----p~~~~~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-GFE-VIVTGRDPKKGKEVAKE-LGVEY-ANDNIDAAKDADIVIISV-----PINVTE 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-CCE-EEEEECChHHHHHHHHH-cCCee-ccCHHHHhccCCEEEEec-----CHHHHH
Confidence 566676 23 443333322222 345 777886 4432 22222 12321 112211234459888744 334556
Q ss_pred HHHHHHHHhCCCCCEEE
Q 025363 176 LIMENCYKALPAGGKLI 192 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~ 192 (254)
.+++++...++||..++
T Consensus 73 ~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLM 89 (437)
T ss_pred HHHHHHHhhCCCCCEEE
Confidence 78888888888887444
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.93 E-value=1.3e+02 Score=25.02 Aligned_cols=86 Identities=12% Similarity=0.028 Sum_probs=45.0
Q ss_pred eEEEecCcccH--HHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeC--C------CCCC----CCCccEEEeccc
Q 025363 100 RLVDVGGSAGD--CLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGG--D------MFKS----IPAADAIFMKWV 165 (254)
Q Consensus 100 ~vlDvG~G~G~--~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~--d------~~~~----~p~~D~v~~~~v 165 (254)
+|+=||+|.-. ++..|.+. +.. ++.++.++.++..++. .+..... + ..++ ....|++++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~-V~~~~r~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRD-VTFLVRPKRAKALRER-GLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCc-eEEEecHHHHHHHHhC-CeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 57778877433 33334443 345 7777775444443332 1222111 1 1111 123488776432
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
- .+...+++++...++++..++..
T Consensus 78 ~-----~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 78 A-----YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred c-----cCHHHHHHHHHhhcCCCCEEEEe
Confidence 2 23467788888888887766644
No 398
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.54 E-value=1.2e+02 Score=24.43 Aligned_cols=92 Identities=13% Similarity=0.052 Sum_probs=50.4
Q ss_pred CCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CC--CccEEEecccccc
Q 025363 94 GFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP--AADAIFMKWVLTT 168 (254)
Q Consensus 94 ~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p--~~D~v~~~~vlh~ 168 (254)
...++.+||=.|+|. |..+..++++...-+ ++..+. ++..+.+++.....-+ .+..+. .+ ..|+++-...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~-vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGARE-VVGVDPDAARRELAEALGPADPV-AADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCc-EEEECCCHHHHHHHHHcCCCccc-cccchhhhcCCCCCEEEEccC---
Confidence 356678888888764 677777887765334 666665 5544443322100000 000001 11 1377764211
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. ...+....+.|+++|+++...
T Consensus 169 -~----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 -S----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -C----hHHHHHHHHHhcCCcEEEEEe
Confidence 1 135677888999999988654
No 399
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=52.50 E-value=83 Score=26.20 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCC----CeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFI----CEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~----~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
+..||=+|++.|.....|.+.+++. + -+.+|............ ++-+... +-+++
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ik-w~LiDp~~h~~~Le~l~----------------nV~Li~~----f~de~ 119 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIK-WMLIDGRKHDPILNGLR----------------DVTLVTR----FVDEA 119 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeE-EEEECCCcccHhhcCCC----------------cEEeeHh----hcCHH
Confidence 4599999999999999999998873 4 56677522111111112 3323222 12332
Q ss_pred HHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 174 CKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
-++..++-+.+.-.|+|.|....+
T Consensus 120 ---~i~~~r~~~~~~~illISDIRS~~ 143 (300)
T PHA03108 120 ---YLRRLKKQLHPSKIILISDIRSKR 143 (300)
T ss_pred ---HHHHHHHhccCCCEEEEEeecccC
Confidence 567888888888889999987644
No 400
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=52.23 E-value=1.3e+02 Score=27.14 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=55.1
Q ss_pred CeEEEecCcccHHHHH--HHHHcCCCCeEEEeec-hHHHhhCCCC------C------------CcEEEeCCCCCCCCCc
Q 025363 99 KRLVDVGGSAGDCLRM--ILQKHRFICEGINFDL-PEVVAEAPSI------P------------GVTHIGGDMFKSIPAA 157 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~--l~~~~~~~~~~~~~D~-~~~~~~~~~~------~------------~i~~~~~d~~~~~p~~ 157 (254)
++|.=||.|...+..+ |+++.++.+ ++++|. ++.++..+.. + ++.+ ..|..+.+.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~-V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIE-VVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcC
Confidence 4677788886665554 333334567 899998 7666664332 0 1111 11221113345
Q ss_pred cEEEecc-ccc---------cCCHHHHHHHHHHHHHhCCCCCEEEEEccccCC
Q 025363 158 DAIFMKW-VLT---------TWTDDECKLIMENCYKALPAGGKLIACEPVLPD 200 (254)
Q Consensus 158 D~v~~~~-vlh---------~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 200 (254)
|+|++.- +-. ..+-.....+.+.+.+.|++ |.++|.+.+.+.
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~-~~lVv~~STvp~ 131 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS-DKIVVEKSTVPV 131 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-CcEEEEeCCCCC
Confidence 8876532 111 11223577888999999976 556666666553
No 401
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.93 E-value=75 Score=26.91 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=37.3
Q ss_pred EEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC----CCCccEEEecc
Q 025363 101 LVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS----IPAADAIFMKW 164 (254)
Q Consensus 101 vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~----~p~~D~v~~~~ 164 (254)
|+|+=||.|.+...+.++. .+.+..+|. +...+..+.+ +. .+..+|+.+. +|+.|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecC
Confidence 5899999999999998774 441345777 5554443332 22 3445666553 33348877643
No 402
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=51.63 E-value=55 Score=30.70 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=54.2
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--CC-----CccEEEecccccc
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--IP-----AADAIFMKWVLTT 168 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~p-----~~D~v~~~~vlh~ 168 (254)
..+|+=+|+| .|......+++. +.+ ++++|. ++.++.+++ .....+.||..++ +. .+|++++.- .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~- 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVK-MTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI--D- 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCC-EEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--C-
Confidence 3567777766 444444444442 456 889998 777777765 4678889999876 21 247766532 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
+++.+..+...+++ +.|.-+++.
T Consensus 474 -d~~~n~~i~~~ar~-~~p~~~iia 496 (621)
T PRK03562 474 -DPQTSLQLVELVKE-HFPHLQIIA 496 (621)
T ss_pred -CHHHHHHHHHHHHH-hCCCCeEEE
Confidence 34555565555555 467766655
No 403
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=51.63 E-value=38 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=20.6
Q ss_pred CCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec
Q 025363 98 VKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 98 ~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
+++|.=||.| .|......++.+ +.+ ++++|.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~-V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAK-VVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCE-EEEECC
Confidence 5677777765 355555555554 567 888886
No 404
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.50 E-value=9.8 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCEEEEE
Q 025363 173 ECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i~ 194 (254)
-....+++++++|||||.+++.
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCeeEEEE
Confidence 3578899999999999998874
No 405
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=51.44 E-value=66 Score=27.25 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=59.2
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeech--HHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP--EVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~--~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||||+=..+.++.-+-.++. +++-=.+ ..-+.+++ +..+ ..+..+-.+.+|+|++ -.||+.-.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGln-ViiGlr~g~~s~~kA~~-dGf~--V~~v~ea~k~ADvim~-----L~PDe~q~ 88 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLN-VIIGLRKGSSSWKKAKE-DGFK--VYTVEEAAKRADVVMI-----LLPDEQQK 88 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCc-EEEEecCCchhHHHHHh-cCCE--eecHHHHhhcCCEEEE-----eCchhhHH
Confidence 67999999999999988887777777 5433221 11233332 2222 3333333556798876 24777666
Q ss_pred HHHH-HHHHhCCCCCEEEEEcc
Q 025363 176 LIME-NCYKALPAGGKLIACEP 196 (254)
Q Consensus 176 ~il~-~~~~~L~pgG~l~i~d~ 196 (254)
++.+ ++...|+.|-.|.+..-
T Consensus 89 ~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 89 EVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred HHHHHHhhhhhcCCceEEeccc
Confidence 7777 89999999988887654
No 406
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=50.91 E-value=1.1e+02 Score=26.01 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=45.2
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcE-EEeCCCCCC-CCCccEEEeccccccCCHH
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVT-HIGGDMFKS-IPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~-~~~~d~~~~-~p~~D~v~~~~vlh~~~~~ 172 (254)
.+++|.=||.| .|.-....++.+ +.+ ++++|. +... +.+. +...+-.+. ++++|+|++.--+- +
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~af-G~~-V~~~~~~~~~~------~~~~~~~~~~~l~e~l~~aDvvv~~lPlt----~ 202 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTW-GFP-LRCWSRSRKSW------PGVQSFAGREELSAFLSQTRVLINLLPNT----P 202 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCCCCC------CCceeecccccHHHHHhcCCEEEECCCCC----H
Confidence 35788888776 365555555554 557 888885 2110 1111 111111112 45679988755543 2
Q ss_pred HHHHHH-HHHHHhCCCCCEEE
Q 025363 173 ECKLIM-ENCYKALPAGGKLI 192 (254)
Q Consensus 173 ~~~~il-~~~~~~L~pgG~l~ 192 (254)
+...++ ++..+.||||..|+
T Consensus 203 ~T~~li~~~~l~~mk~ga~lI 223 (312)
T PRK15469 203 ETVGIINQQLLEQLPDGAYLL 223 (312)
T ss_pred HHHHHhHHHHHhcCCCCcEEE
Confidence 333343 45778889886544
No 407
>PLN02688 pyrroline-5-carboxylate reductase
Probab=50.16 E-value=82 Score=25.64 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=46.3
Q ss_pred eEEEecCcc--cHHHHHHHHHc--CCCCeEEEe-ec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKH--RFICEGINF-DL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~--~~~~~~~~~-D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
+|.=||+|. +..+..|++.. +..+ ++++ |. ++..+...+ ..+... .+..+-..++|+|++.- ++..
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~-i~v~~~r~~~~~~~~~~-~g~~~~-~~~~e~~~~aDvVil~v-----~~~~ 73 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSR-ISTADDSNPARRDVFQS-LGVKTA-ASNTEVVKSSDVIILAV-----KPQV 73 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcce-EEEEeCCCHHHHHHHHH-cCCEEe-CChHHHHhcCCEEEEEE-----CcHH
Confidence 455677763 44555555542 2225 7777 76 554444332 233321 12111123358887643 3566
Q ss_pred HHHHHHHHHHhCCCCCEEE
Q 025363 174 CKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~ 192 (254)
..++++.+...++|+..++
T Consensus 74 ~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 74 VKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred HHHHHHHHHhhcCCCCEEE
Confidence 7888888888887775544
No 408
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=49.87 E-value=1.3e+02 Score=25.08 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=53.1
Q ss_pred CCCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCC----C-CCc-cEEE
Q 025363 94 GFKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKS----I-PAA-DAIF 161 (254)
Q Consensus 94 ~~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~----~-p~~-D~v~ 161 (254)
...++.+||=.| +|.|..+..+++.. +.+ ++..+. ++-.+.+++..--.++.. +.... . +.. |+++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~-Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence 366788898887 56888888888876 456 776665 544444433211111111 11111 1 122 6665
Q ss_pred eccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 162 MKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 162 ~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
-. ... ..+....++|+|+|+++....
T Consensus 213 d~-----~G~----~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 213 DN-----VGG----EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred EC-----CCH----HHHHHHHHHhCcCcEEEEecc
Confidence 31 111 235788899999999997653
No 409
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=49.76 E-value=91 Score=27.59 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=50.3
Q ss_pred CCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHH
Q 025363 96 KGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 96 ~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
-.+.+|+=+|+|. |......++.+ +.+ ++++|. |.-...+.. ....+ .++.+....+|+++..--
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~-ViV~d~dp~r~~~A~~-~G~~v--~~leeal~~aDVVItaTG-------- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GAR-VIVTEVDPIRALEAAM-DGFRV--MTMEEAAKIGDIFITATG-------- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCE-EEEEeCChhhHHHHHh-cCCEe--CCHHHHHhcCCEEEECCC--------
Confidence 3577999999874 55555555554 567 888886 433222222 12222 222122444698876321
Q ss_pred HHHHHH-HHHHhCCCCCEEEEEcc
Q 025363 174 CKLIME-NCYKALPAGGKLIACEP 196 (254)
Q Consensus 174 ~~~il~-~~~~~L~pgG~l~i~d~ 196 (254)
...++. +....||||++|+..-.
T Consensus 260 ~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 260 NKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CHHHHHHHHHhcCCCCcEEEEECC
Confidence 234454 47788999998886543
No 410
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=49.72 E-value=1.5e+02 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 155 PAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 155 p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
.++|+|++. .|+.....++++++..|+++-.++..
T Consensus 81 ~~ADiIIlA-----VPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 81 KGADILVFV-----IPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred hcCCEEEEE-----CChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 445887764 35667778899999999876545443
No 411
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=49.64 E-value=1.2e+02 Score=25.89 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=70.9
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-CCcEEEeCCCCCC----CC--CccEEEeccccccC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-PGVTHIGGDMFKS----IP--AADAIFMKWVLTTW 169 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~~i~~~~~d~~~~----~p--~~D~v~~~~vlh~~ 169 (254)
..+++|+=||.|.+...+.++. .+.+...|+ |..++.-+.+ +.-.++..|..+- ++ ..|+++...--..|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 4689999999999999999886 331455677 6555544433 2244555555543 12 23777765544444
Q ss_pred CHHHHH-----------HHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHH
Q 025363 170 TDDECK-----------LIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLG 238 (254)
Q Consensus 170 ~~~~~~-----------~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 238 (254)
+..... --+.++...++| +++++|.+..- +. . +..+.++|.+.|
T Consensus 81 S~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl------------------~~---~--~~~~~~~i~~~L 135 (328)
T COG0270 81 SIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGL------------------LS---S--KGQTFDEIKKEL 135 (328)
T ss_pred hhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchH------------------Hh---c--CchHHHHHHHHH
Confidence 322111 223444455567 66776754321 10 1 234678899999
Q ss_pred HhCCCC
Q 025363 239 FFAGFP 244 (254)
Q Consensus 239 ~~aGf~ 244 (254)
++.|+.
T Consensus 136 ~~~GY~ 141 (328)
T COG0270 136 EELGYG 141 (328)
T ss_pred HHcCCc
Confidence 999996
No 412
>PRK13243 glyoxylate reductase; Reviewed
Probab=49.56 E-value=33 Score=29.32 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=45.3
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||.|. |......++.+ +.+ ++++|. +.-. .... ..+.+ .++.+-++++|+|++.--+. ++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~-V~~~d~~~~~~-~~~~-~~~~~--~~l~ell~~aDiV~l~lP~t----~~T~ 219 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMR-ILYYSRTRKPE-AEKE-LGAEY--RPLEELLRESDFVSLHVPLT----KETY 219 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCE-EEEECCCCChh-hHHH-cCCEe--cCHHHHHhhCCEEEEeCCCC----hHHh
Confidence 57888888764 55555555554 457 888886 2211 1111 11222 12222255679988755432 2222
Q ss_pred HHH-HHHHHhCCCCCEEEE
Q 025363 176 LIM-ENCYKALPAGGKLIA 193 (254)
Q Consensus 176 ~il-~~~~~~L~pgG~l~i 193 (254)
.++ ++..+.||||..|+=
T Consensus 220 ~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 220 HMINEERLKLMKPTAILVN 238 (333)
T ss_pred hccCHHHHhcCCCCeEEEE
Confidence 333 567777888765543
No 413
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=49.28 E-value=1.5e+02 Score=24.58 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHhhcCCCCCCCeEEEe--cCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCC---CCcEEEeCCCCCC---C--CCc
Q 025363 88 VLEGYNGFKGVKRLVDV--GGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSI---PGVTHIGGDMFKS---I--PAA 157 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDv--G~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~---~~i~~~~~d~~~~---~--p~~ 157 (254)
+-+++ +.+++.+||-- .||-|..+.++++...... +......+-.+.++++ ..|.+..-|+.+. + +.+
T Consensus 138 l~e~y-~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~t-I~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 138 LFEAY-NVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHT-IATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred HHHhc-CCCCCCEEEEEeccccHHHHHHHHHHhcCcEE-EEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCC
Confidence 44667 48888888765 5789999999998864422 2222234545555554 3356666666544 2 223
Q ss_pred -cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 158 -DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 158 -D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
|+++=+-- ...++.-..+|||+|+++..-..
T Consensus 216 Vd~vyDsvG---------~dt~~~sl~~Lk~~G~mVSfG~a 247 (336)
T KOG1197|consen 216 VDAVYDSVG---------KDTFAKSLAALKPMGKMVSFGNA 247 (336)
T ss_pred ceeeecccc---------chhhHHHHHHhccCceEEEeccc
Confidence 77664322 24467778899999999876543
No 414
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=49.25 E-value=26 Score=32.52 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=60.1
Q ss_pred HHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-C--C--------C
Q 025363 88 VLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-I--P--------A 156 (254)
Q Consensus 88 i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~--p--------~ 156 (254)
+-+.|.-+.+...|||+||..|.+..-.++.+|-..-++++|+..+- ..++|.....|+..+ . + .
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 44455323567889999999999999988888844327889974331 113444444455443 1 1 1
Q ss_pred ccEEEe---ccccccCCHHH------HHHHHHHHHHhCCCCCEEEEEcccc
Q 025363 157 ADAIFM---KWVLTTWTDDE------CKLIMENCYKALPAGGKLIACEPVL 198 (254)
Q Consensus 157 ~D~v~~---~~vlh~~~~~~------~~~il~~~~~~L~pgG~l~i~d~~~ 198 (254)
+|+|+- .+|=-.|..+. ....|+-...-|..||. ++.....
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~-fvtkvfr 160 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT-FVTKVFR 160 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc-ccccccc
Confidence 366553 33333343221 12345556667778888 3434333
No 415
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=49.14 E-value=1.1e+02 Score=25.69 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE---eCCCCCC----CC-C-ccEEEec
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI---GGDMFKS----IP-A-ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~---~~d~~~~----~p-~-~D~v~~~ 163 (254)
..++.+||-.|+| .|..+..++++..... ++.++. +...+.+++..--.++ ..++.+. .+ . .|+++-.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAAR-IIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 4567788887764 4778888888765335 666665 4333332221111111 1111111 12 1 2777642
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.. . ...+++..+.|+++|+++...
T Consensus 244 ~g-----~---~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VG-----F---EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 11 1 146788889999999988664
No 416
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=48.94 E-value=68 Score=26.64 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHH---HH
Q 025363 107 SAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM---EN 180 (254)
Q Consensus 107 G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il---~~ 180 (254)
|.|..+..+++.. .+.+ ++++|. ++..+...+. .+.. ..+..+-..++|+|++.-. ++.....++ +.
T Consensus 3 GlG~mG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~-g~~~-~~s~~~~~~~advVil~vp----~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHP-VRVFDLFPDAVEEAVAA-GAQA-AASPAEAAEGADRVITMLP----AGQHVISVYSGDEG 75 (288)
T ss_pred cccHhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHc-CCee-cCCHHHHHhcCCEEEEeCC----ChHHHHHHHcCcch
Confidence 4444444444443 2346 888898 5555444331 2221 1111111223488876321 224456666 66
Q ss_pred HHHhCCCCCEEE
Q 025363 181 CYKALPAGGKLI 192 (254)
Q Consensus 181 ~~~~L~pgG~l~ 192 (254)
+...++||-.++
T Consensus 76 l~~~~~~g~~vi 87 (288)
T TIGR01692 76 ILPKVAKGSLLI 87 (288)
T ss_pred HhhcCCCCCEEE
Confidence 777777765433
No 417
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=48.87 E-value=21 Score=31.10 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=46.8
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-C-CcEEEeCCC--CCC-CCCccEEEeccccccC
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-P-GVTHIGGDM--FKS-IPAADAIFMKWVLTTW 169 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-~-~i~~~~~d~--~~~-~p~~D~v~~~~vlh~~ 169 (254)
+..+|+=+|+| .|..+...++.. +.+ ++++|. ++-.+.+... . .+.....+. +.. +..+|+++..-..-
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~-V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~-- 241 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GAT-VTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP-- 241 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC--
Confidence 34678888877 566667777666 357 899997 5544433221 1 111111110 011 34459988642110
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
......-+-++..+.|+||+.++
T Consensus 242 g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred CCCCCcCcCHHHHhcCCCCCEEE
Confidence 01111112355556789997654
No 418
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.86 E-value=38 Score=28.86 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCCCCCeEEEec-CcccHHHHHHHHHcCCCCeEEEeech--HHHhhCCCCCCcEEE----eCCCCCCCCCc-cEEE-ecc
Q 025363 94 GFKGVKRLVDVG-GSAGDCLRMILQKHRFICEGINFDLP--EVVAEAPSIPGVTHI----GGDMFKSIPAA-DAIF-MKW 164 (254)
Q Consensus 94 ~~~~~~~vlDvG-~G~G~~~~~l~~~~~~~~~~~~~D~~--~~~~~~~~~~~i~~~----~~d~~~~~p~~-D~v~-~~~ 164 (254)
...++++|-=+| ||-|..+..++++. +.+ ++++|.. .-.+..+....=.|+ ..|..+..-.. |.++ ...
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~r-V~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~ 255 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAM-GMR-VTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVS 255 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHh-CcE-EEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeee
Confidence 355777766665 56999999999998 567 9999973 222222222111122 12221111111 3222 111
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.| +...+....+.||++|+++++-.
T Consensus 256 ~~-------a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 256 NL-------AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred ec-------cccchHHHHHHhhcCCEEEEEeC
Confidence 01 12346677889999999998765
No 419
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=48.75 E-value=1.9e+02 Score=25.46 Aligned_cols=94 Identities=15% Similarity=-0.002 Sum_probs=46.5
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------------------CCcEEEeCCCCCCCCCccE
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------------------PGVTHIGGDMFKSIPAADA 159 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------------------~~i~~~~~d~~~~~p~~D~ 159 (254)
+|.=||+|.=....+..-...+.+ ++++|. ++.++..... .++.+. .|..+-..++|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~~adv 79 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIRDADV 79 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHhhCCE
Confidence 455677774333222222223446 899998 6655544321 112221 111111233588
Q ss_pred EEeccccc-----cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 160 IFMKWVLT-----TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 160 v~~~~vlh-----~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
|++.---. ..+-.....+++.+.+.+++|..++...
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 77633211 1112346677788888888876555443
No 420
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=47.92 E-value=1.8e+02 Score=24.84 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEE---eCCCCCC----CCC--ccEEEec
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHI---GGDMFKS----IPA--ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~---~~d~~~~----~p~--~D~v~~~ 163 (254)
..++.+||=.|+| .|.++.++++...-.+ +++.|. ++-.+.+++..--.++ ..|..+. .+. .|+++-.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~-Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASK-IIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 5677888888764 5667778888764335 777776 5554444332111111 1111111 111 2777632
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
- . . ...++...+.+++||++++.-..
T Consensus 253 ~--g---~---~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 253 V--G---R---PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred C--C---C---HHHHHHHHHHhccCCEEEEECCC
Confidence 1 1 1 13466778899999999987643
No 421
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=47.89 E-value=19 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.8
Q ss_pred eecCHHHHHHHHHhCCCCeeeEE
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLY 249 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~ 249 (254)
..++.+++..+++++||++++.-
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w 116 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRW 116 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEE
Confidence 44799999999999999988754
No 422
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.55 E-value=80 Score=26.71 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=49.9
Q ss_pred EEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHH-----HhhCC--CC---CCcEEEeCCCCCCCCCccEEEecccccc
Q 025363 101 LVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEV-----VAEAP--SI---PGVTHIGGDMFKSIPAADAIFMKWVLTT 168 (254)
Q Consensus 101 vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~-----~~~~~--~~---~~i~~~~~d~~~~~p~~D~v~~~~vlh~ 168 (254)
|.=||+|. |......+-..+-....+++|. ++. .+... .. .++....+|. +++.++|+|++..-.-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 55578765 5555443333332222788886 322 11111 11 1455655553 34666799887554422
Q ss_pred ---CCH------HHHHHHHHHHHHhCC---CCCEEEEEc
Q 025363 169 ---WTD------DECKLIMENCYKALP---AGGKLIACE 195 (254)
Q Consensus 169 ---~~~------~~~~~il~~~~~~L~---pgG~l~i~d 195 (254)
.+. ....++++++.+.++ |.|.+++..
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 221 345667777777664 678877754
No 423
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=47.50 E-value=1.2e+02 Score=24.90 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=51.2
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe-CCCCCC----CC-C-ccEEEecccc
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG-GDMFKS----IP-A-ADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~-~d~~~~----~p-~-~D~v~~~~vl 166 (254)
.++.+||=+|+| .|..+..+++...... +++.|. ++-.+.+++..--.++. .+..+. .+ . .|+++-.-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~-Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAAR-VVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 357788888764 5667777777764334 666675 55444444321101111 010000 11 1 277664211
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
. ...++.+.+.|+|+|++++.-..
T Consensus 197 ----~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 197 ----A---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ----C---hHHHHHHHHHhcCCCEEEEeccC
Confidence 1 24577888999999999987654
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.45 E-value=20 Score=27.00 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=45.7
Q ss_pred eEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEeccccccCCHHHHH
Q 025363 100 RLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+|-=||. |..+..+++++ .+.+ ++++|. ++..+...+. .+... +-..+ ...+|+|++.- -++++..
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-g~~~~--~s~~e~~~~~dvvi~~v----~~~~~v~ 72 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-GAEVA--DSPAEAAEQADVVILCV----PDDDAVE 72 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-TEEEE--SSHHHHHHHBSEEEE-S----SSHHHHH
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-hhhhh--hhhhhHhhcccceEeec----ccchhhh
Confidence 3444554 55555555543 2456 889998 6655554432 22221 11111 12248877632 1346677
Q ss_pred HHHHH--HHHhCCCCCEEEEEccc
Q 025363 176 LIMEN--CYKALPAGGKLIACEPV 197 (254)
Q Consensus 176 ~il~~--~~~~L~pgG~l~i~d~~ 197 (254)
+++.. +...|++|..++-+...
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhHHhhccccceEEEecCCc
Confidence 88888 88888887766554443
No 425
>PRK13699 putative methylase; Provisional
Probab=46.90 E-value=58 Score=26.14 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=36.5
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS 139 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~ 139 (254)
+.+.+++.+ -.++..|||-=||+|..+.+..+. +-+ .+++|+ ++..+.+.+
T Consensus 152 l~~~~i~~~--s~~g~~vlDpf~Gsgtt~~aa~~~--~r~-~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 152 SLQPLIESF--THPNAIVLDPFAGSGSTCVAALQS--GRR-YIGIELLEQYHRAGQQ 203 (227)
T ss_pred HHHHHHHHh--CCCCCEEEeCCCCCCHHHHHHHHc--CCC-EEEEecCHHHHHHHHH
Confidence 345566555 246778999999999999887765 345 899998 766655543
No 426
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=46.82 E-value=96 Score=29.67 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=43.7
Q ss_pred CeEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 99 KRLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 99 ~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
.+|.=||+|. +.++..+.+.....+ ++++|. ++..+.+++..-+.-...|..+...++|+|++.- +.....
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 77 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLARE-VVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAV-----PVLAME 77 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCE-EEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 4677777653 222333333221235 788887 5555444332211000111111133459888744 345567
Q ss_pred HHHHHHHHhCCCCC
Q 025363 176 LIMENCYKALPAGG 189 (254)
Q Consensus 176 ~il~~~~~~L~pgG 189 (254)
.+++++...++++.
T Consensus 78 ~vl~~l~~~~~~~~ 91 (735)
T PRK14806 78 KVLADLKPLLSEHA 91 (735)
T ss_pred HHHHHHHHhcCCCc
Confidence 88889988888764
No 427
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=46.61 E-value=9.1 Score=29.37 Aligned_cols=88 Identities=22% Similarity=0.184 Sum_probs=43.6
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
.+++|.=||.| .|......++.+ +.+ ++++|. +........ ..+.+ .++.+-++.+|+|++.--+..-+ .
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~-V~~~d~~~~~~~~~~~-~~~~~--~~l~ell~~aDiv~~~~plt~~T---~ 106 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMR-VIGYDRSPKPEEGADE-FGVEY--VSLDELLAQADIVSLHLPLTPET---R 106 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-E-EEEEESSCHHHHHHHH-TTEEE--SSHHHHHHH-SEEEE-SSSSTTT---T
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-Cce-eEEecccCChhhhccc-cccee--eehhhhcchhhhhhhhhcccccc---c
Confidence 46889889865 555666666655 557 999997 333221110 12222 22222244568887755442111 0
Q ss_pred HHHHHHHHHhCCCCCEEE
Q 025363 175 KLIMENCYKALPAGGKLI 192 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~ 192 (254)
.-+=++..+.||||..|+
T Consensus 107 ~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp TSBSHHHHHTSTTTEEEE
T ss_pred eeeeeeeeeccccceEEE
Confidence 111134566778776543
No 428
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=46.60 E-value=22 Score=28.48 Aligned_cols=46 Identities=26% Similarity=0.244 Sum_probs=39.4
Q ss_pred hHHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeech
Q 025363 84 FMTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDLP 131 (254)
Q Consensus 84 ~~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~ 131 (254)
+.+.+++.+. .-++.+.+|.-=|.|..+..+++++|.++ ..++|..
T Consensus 31 m~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k-~yalDrD 76 (303)
T KOG2782|consen 31 MLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELK-NYALDRD 76 (303)
T ss_pred ehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhh-hhhhccC
Confidence 4677788774 66788999999999999999999999999 8888873
No 429
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=46.49 E-value=8.4 Score=26.12 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=15.1
Q ss_pred EEecCcccHHHHHHHHHcC
Q 025363 102 VDVGGSAGDCLRMILQKHR 120 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~ 120 (254)
+|||||.|..-.+-.+.+.
T Consensus 7 IDIGcG~GNTmda~fRsct 25 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRSCT 25 (124)
T ss_pred cccccCCCcchhhhhhccc
Confidence 7999999998877666653
No 430
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=46.44 E-value=17 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=20.1
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 165 VLTTWTDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
-|||+.+..+..|+++++++|..|..|-.
T Consensus 13 HLHHiEPKRVKvIVeEv~qaltegklLkm 41 (149)
T PF03574_consen 13 HLHHIEPKRVKVIVEEVRQALTEGKLLKM 41 (149)
T ss_dssp HHTT--HHHHHHHHHHHHHHHSSS-----
T ss_pred cccccCchhhhhHHHHHHHHHhhhhHHHH
Confidence 47899999999999999999998776544
No 431
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=46.23 E-value=1.5e+02 Score=26.15 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=55.3
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCC-CCcEE-----EeCC-----CCCC-------CCC-
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSI-PGVTH-----IGGD-----MFKS-------IPA- 156 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~-~~i~~-----~~~d-----~~~~-------~p~- 156 (254)
..-++-.||-.+.+..-+.--.++-+ +++++. +.-....+-. ....| ..|+ +.-+ +.+
T Consensus 94 ~eVlVT~GA~~ai~~~~~~l~~~GDe-Vii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k 172 (420)
T KOG0257|consen 94 DEVLVTAGANEAISSALLGLLNPGDE-VIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK 172 (420)
T ss_pred ccEEEecCchHHHHHHHHHHcCCCCE-EEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCC
Confidence 44566677766666565555667778 888885 4433333321 11111 1122 1111 111
Q ss_pred ccEEEecccccc-CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 157 ADAIFMKWVLTT-WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 157 ~D~v~~~~vlh~-~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
.++|++..- |+ ...--.++.|+++.+..+..|.|+|.|.+..
T Consensus 173 Tk~Ii~ntP-hNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe 215 (420)
T KOG0257|consen 173 TKAIILNTP-HNPTGKVFSREELERIAELCKKHGLLVISDEVYE 215 (420)
T ss_pred ccEEEEeCC-CCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhH
Confidence 277776432 32 1111235679999999999999999987543
No 432
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=46.15 E-value=77 Score=26.52 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=44.0
Q ss_pred eEEEecCccc--HHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCC---CCCCccEEEeccccccCCHHH
Q 025363 100 RLVDVGGSAG--DCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFK---SIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 100 ~vlDvG~G~G--~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~---~~p~~D~v~~~~vlh~~~~~~ 173 (254)
+|-=||+|.= ..+..+++. +.+ ++++|. ++..+...+.. +... .+..+ .....|+|++. .++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~--g~~-V~~~dr~~~~~~~l~~~g-~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR--GHD-CVGYDHDQDAVKAMKEDR-TTGV-ANLRELSQRLSAPRVVWVM-----VPHGI 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHcC-Cccc-CCHHHHHhhcCCCCEEEEE-----cCchH
Confidence 4555776642 233333333 456 888998 66555544321 1111 11111 12234887763 24446
Q ss_pred HHHHHHHHHHhCCCCCEE
Q 025363 174 CKLIMENCYKALPAGGKL 191 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l 191 (254)
...+++++...|++|-.+
T Consensus 72 ~~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIV 89 (298)
T ss_pred HHHHHHHHHhhCCCCCEE
Confidence 678889999999887543
No 433
>PRK09273 hypothetical protein; Provisional
Probab=46.07 E-value=20 Score=28.35 Aligned_cols=39 Identities=13% Similarity=-0.036 Sum_probs=26.4
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCC
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPS 139 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 139 (254)
...=++||||.=..-.+.++|+++ +-.+--|.....++.
T Consensus 65 d~GIliCGTGiG~siAANK~pGIr-aalc~d~~sA~lar~ 103 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVV-CGYCIDPTDAYLFAQ 103 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeE-EEEeCCHHHHHHHHH
Confidence 345568999999999999999998 544433333333333
No 434
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=45.97 E-value=1.3e+02 Score=27.01 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=52.3
Q ss_pred CCCCCCeEEEecC-cc-cHHHHHHHHHc---C---CC--CeEEEeec-hHHHhh-CCC--------CCCcEEEeCCCCCC
Q 025363 94 GFKGVKRLVDVGG-SA-GDCLRMILQKH---R---FI--CEGINFDL-PEVVAE-APS--------IPGVTHIGGDMFKS 153 (254)
Q Consensus 94 ~~~~~~~vlDvG~-G~-G~~~~~l~~~~---~---~~--~~~~~~D~-~~~~~~-~~~--------~~~i~~~~~d~~~~ 153 (254)
.|++..+|.=||+ |. |......+-.. . ++ + .+.+|. ++..+. +.+ ..+|.+..+| .++
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~e-LvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-ye~ 173 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALK-LLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-YEV 173 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccE-EEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-HHH
Confidence 4777889999998 75 44333322221 1 22 4 666775 322211 111 0234433333 334
Q ss_pred CCCccEEEeccccccCCH-------HHHHHHHHHHHHhC----CCCCEEEEEc
Q 025363 154 IPAADAIFMKWVLTTWTD-------DECKLIMENCYKAL----PAGGKLIACE 195 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~-------~~~~~il~~~~~~L----~pgG~l~i~d 195 (254)
+.++|+|++....-.-+. +...++++++.+.+ +|.|++++.-
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 666799888655432221 22345566655555 5789888865
No 435
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=45.87 E-value=6.8 Score=32.81 Aligned_cols=94 Identities=21% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC-------CCcEEEeCCCCCCCCC--ccEEEe---cc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFM---KW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~-------~~i~~~~~d~~~~~p~--~D~v~~---~~ 164 (254)
+..|+|+=+|.|+++..++-...... +.+++. |..++..+.. .|...+.||--..-|. +|=|.+ ..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~-V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPS 273 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKT-VFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPS 273 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccE-EEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccccc
Confidence 57899999999999996555554555 889998 8877766543 3455555665555443 455544 33
Q ss_pred ccccCCHHHHHHHHHHHHHhCCCC-C-EEEEEccccCCC
Q 025363 165 VLTTWTDDECKLIMENCYKALPAG-G-KLIACEPVLPDD 201 (254)
Q Consensus 165 vlh~~~~~~~~~il~~~~~~L~pg-G-~l~i~d~~~~~~ 201 (254)
.=..|+ .+.++|||. | .+-|.|.+-.++
T Consensus 274 se~~W~---------~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 274 SEQGWP---------TAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred cccchH---------HHHHHhhhcCCcEEEEeccccccc
Confidence 334453 445667764 4 677887776554
No 436
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=45.84 E-value=1.2e+02 Score=25.13 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=43.4
Q ss_pred eEEEecCcc--cHHHHHHHHHc--CCCCeEEEeec-h-HHHhhCCC-CCCcEEEeCCCCCCCCCccEEEeccccccCCHH
Q 025363 100 RLVDVGGSA--GDCLRMILQKH--RFICEGINFDL-P-EVVAEAPS-IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDD 172 (254)
Q Consensus 100 ~vlDvG~G~--G~~~~~l~~~~--~~~~~~~~~D~-~-~~~~~~~~-~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~ 172 (254)
+|.=||||. +.++..+.+.. +..+ +++++. + +-.+.... ...+.. ..|..+...++|+|++.- ++.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~-V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e~~~~aDvVilav-----pp~ 75 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEE-IILYSSSKNEHFNQLYDKYPTVEL-ADNEAEIFTKCDHSFICV-----PPL 75 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCccc-EEEEeCCcHHHHHHHHHHcCCeEE-eCCHHHHHhhCCEEEEec-----CHH
Confidence 466677764 33444444442 1134 666765 2 22222111 112221 222211123458887532 445
Q ss_pred HHHHHHHHHHHhCCCCCEEEE
Q 025363 173 ECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 173 ~~~~il~~~~~~L~pgG~l~i 193 (254)
....+++++...++++..++.
T Consensus 76 ~~~~vl~~l~~~l~~~~~ivS 96 (277)
T PRK06928 76 AVLPLLKDCAPVLTPDRHVVS 96 (277)
T ss_pred HHHHHHHHHHhhcCCCCEEEE
Confidence 677888999888877665443
No 437
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=45.71 E-value=1.6e+02 Score=24.44 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCeEEEecCcc--cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------C------------CCcEEEeCCCC
Q 025363 98 VKRLVDVGGSA--GDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------I------------PGVTHIGGDMF 151 (254)
Q Consensus 98 ~~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~------------~~i~~~~~d~~ 151 (254)
..+|.=||+|. ...+..++.. +.+ ++++|. ++.++.+++ . .++.+. .+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~- 78 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMD-VWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL- 78 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH-
Confidence 35677788762 2333334433 456 899997 655543211 0 122222 121
Q ss_pred CCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEE
Q 025363 152 KSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 152 ~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~ 192 (254)
+...++|+|+..-. . +.+....+++++.+.++|+..|+
T Consensus 79 ~~~~~aD~Vieav~-e--~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 79 EELRDADFIIEAIV-E--SEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred HHhCCCCEEEEcCc-c--CHHHHHHHHHHHHhhCCCCcEEE
Confidence 22444699887432 1 12344578888999888887554
No 438
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=45.42 E-value=1.3e+02 Score=24.91 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=45.7
Q ss_pred eEEEecCcc-cH-HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC------CCCC---CCCccEEEeccccc
Q 025363 100 RLVDVGGSA-GD-CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD------MFKS---IPAADAIFMKWVLT 167 (254)
Q Consensus 100 ~vlDvG~G~-G~-~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d------~~~~---~p~~D~v~~~~vlh 167 (254)
+|+=||+|. |. ++..|.+. +.. ++.++. ++..+..++. .+.+..++ ..++ ....|+|++.---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~-V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHD-VTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAELGPQDLVILAVKA- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCe-EEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhHcCCCCEEEEeccc-
Confidence 577788763 32 33334433 345 888887 5554443322 12110111 1111 2234888764322
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 168 TWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 168 ~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+...+++.+...+.++..+++.-
T Consensus 77 ----~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 77 ----YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred ----ccHHHHHHHHhhhcCCCCEEEEec
Confidence 234677888888888877776543
No 439
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=45.26 E-value=48 Score=27.05 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=23.3
Q ss_pred CCeEEEec-CcccHHHHHHHHHcCCCCeEEEeechH
Q 025363 98 VKRLVDVG-GSAGDCLRMILQKHRFICEGINFDLPE 132 (254)
Q Consensus 98 ~~~vlDvG-~G~G~~~~~l~~~~~~~~~~~~~D~~~ 132 (254)
+.+|+-+| ||-|.++...+.+..-.+ .+++|.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~-itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGR-ITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCe-EEEEeccc
Confidence 56788887 467888888777754334 77777643
No 440
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=44.68 E-value=1.1e+02 Score=27.20 Aligned_cols=86 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred eEEEecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C-----CCccEEEeccccccC
Q 025363 100 RLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I-----PAADAIFMKWVLTTW 169 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~-----p~~D~v~~~~vlh~~ 169 (254)
+|+=+|+ |..+..+++.. .+.. ++++|. ++..+..++...+.++.+|..+. + ..+|.+++..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~----- 73 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENND-VTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT----- 73 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----
Confidence 4666665 67777766653 2456 889997 77666655434578888998764 1 2247666532
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEE
Q 025363 170 TDDECKLIMENCYKALPAGGKLIA 193 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i 193 (254)
++++....+....+.+.|.-++++
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 122223334444555545544444
No 441
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=44.63 E-value=9.9 Score=33.57 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=27.2
Q ss_pred eEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC--CCCcEEEe
Q 025363 100 RLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS--IPGVTHIG 147 (254)
Q Consensus 100 ~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~--~~~i~~~~ 147 (254)
+|+=||+|...+..++..+-.+.+ +++++. +.+-.+... ..|+++..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~-V~vlE~~~~~gkKil~tG~GrCN~tn 51 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGAR-VLVLERNKRVGKKILITGNGRCNLTN 51 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEE
T ss_pred cEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCcccccceeecCCCCccccc
Confidence 477899998887777777667888 999987 555444322 25677665
No 442
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=44.43 E-value=95 Score=26.32 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCCCeEEEecCcc-cHHHHHHHHHcCCC-CeEEEeec-hHHHh-hCCC------C-CCcEEEeCCCCCCCCCccEEEecc
Q 025363 96 KGVKRLVDVGGSA-GDCLRMILQKHRFI-CEGINFDL-PEVVA-EAPS------I-PGVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 96 ~~~~~vlDvG~G~-G~~~~~l~~~~~~~-~~~~~~D~-~~~~~-~~~~------~-~~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
+.+.+|.=||+|. |......+...+-. + ..++|. ++... .+.+ . .++....+|. +.+.++|+|++..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~e-l~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIita 81 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADE-LVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITA 81 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCE-EEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEec
Confidence 3456899999876 55555544444433 4 788886 32211 1111 1 2445544442 3466679988755
Q ss_pred ccccCC---H----HHHHHHHHHHHHhCC---CCCEEEEEc
Q 025363 165 VLTTWT---D----DECKLIMENCYKALP---AGGKLIACE 195 (254)
Q Consensus 165 vlh~~~---~----~~~~~il~~~~~~L~---pgG~l~i~d 195 (254)
-.-.-+ . .....+++++...++ |.|++++.-
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 442211 1 124456666555553 788887754
No 443
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=44.37 E-value=1.6e+02 Score=25.03 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCC-CeEEEeec-hHHH-----hhCCC----CCCcEEEe-CCCCCCCCCccEEEecc
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVV-----AEAPS----IPGVTHIG-GDMFKSIPAADAIFMKW 164 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~~D~-~~~~-----~~~~~----~~~i~~~~-~d~~~~~p~~D~v~~~~ 164 (254)
..+|.=||+|+=..+....-...++ . ++++|. ++.. +.... ....++.. +|. +.+.++|+|+...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 3689999988744444444344454 6 888998 5432 11111 02234443 454 3466679998733
No 444
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=44.34 E-value=32 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=18.8
Q ss_pred EecCccc--HHHHHHH--HHcCCCCeEEEeec-hHHHh
Q 025363 103 DVGGSAG--DCLRMIL--QKHRFICEGINFDL-PEVVA 135 (254)
Q Consensus 103 DvG~G~G--~~~~~l~--~~~~~~~~~~~~D~-~~~~~ 135 (254)
|||++.| .....++ ...+..+ ++.++. |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~-v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGR-VHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SE-EEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCE-EEEEECCHHHHH
Confidence 8999999 6666654 3456777 888997 66533
No 445
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=44.30 E-value=1.5e+02 Score=24.96 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=45.8
Q ss_pred CeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC----------C--CCcEEEeCCCCCCCCCccEEEecc
Q 025363 99 KRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPS----------I--PGVTHIGGDMFKSIPAADAIFMKW 164 (254)
Q Consensus 99 ~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~----------~--~~i~~~~~d~~~~~p~~D~v~~~~ 164 (254)
.+|.=||+|. |......+....... ++++|. ++. +..+. . .++.+ ..|+ ++..++|+|++.-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~~~l-~~g~a~d~~~~~~~~~~~~~i~~-t~d~-~~~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVVEGI-PQGKALDMYEASPVGGFDTKVTG-TNNY-ADTANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCCCCh-hHHHHHhhhhhhhccCCCcEEEe-cCCH-HHhCCCCEEEEcC
Confidence 4677888876 444444333332237 888997 332 22110 0 12322 2444 2355569988754
Q ss_pred ccccCC-----------HHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 165 VLTTWT-----------DDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 165 vlh~~~-----------~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
-.-.-+ -+-...+.+++.+.. |++.+++..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~t 118 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVS 118 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 422111 122334555555553 778777754
No 446
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=44.03 E-value=1.7e+02 Score=25.99 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHh-hCCCCCCcEEEe-CCCCCCCCCccEEEecccc-cc-C
Q 025363 96 KGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVA-EAPSIPGVTHIG-GDMFKSIPAADAIFMKWVL-TT-W 169 (254)
Q Consensus 96 ~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~-~~~~~~~i~~~~-~d~~~~~p~~D~v~~~~vl-h~-~ 169 (254)
.++.+|+-+|+| .|......+......+ +++++. ++-.. .++..+ ..... .|..+....+|+|+..-.- +. +
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~-V~v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i 257 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRK-ITVANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISSTGAPHPII 257 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECCCCCCcEE
Confidence 346799999875 4444444444443235 778887 44322 222211 12222 1221123446998875322 11 2
Q ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 170 TDDECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 170 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
..+ .++...+ -+.++..++.|...|.+
T Consensus 258 ~~~----~l~~~~~-~~~~~~~vviDla~Prd 284 (423)
T PRK00045 258 GKG----MVERALK-ARRHRPLLLVDLAVPRD 284 (423)
T ss_pred cHH----HHHHHHh-hccCCCeEEEEeCCCCC
Confidence 222 2222211 13345567778877654
No 447
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=43.92 E-value=2e+02 Score=24.32 Aligned_cols=89 Identities=7% Similarity=-0.041 Sum_probs=49.7
Q ss_pred CeEEEecCc-cc-HHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCC--CCC---------CCCccEEEeccc
Q 025363 99 KRLVDVGGS-AG-DCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDM--FKS---------IPAADAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G-~G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~--~~~---------~p~~D~v~~~~v 165 (254)
++|+=+|+| -| .++..|+++. .. ++.+-.++.++..++. .+.....+- ... .+.+|++++.-=
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~-V~~~~R~~~~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HD-VTLLVRSRRLEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--Ce-EEEEecHHHHHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 367788887 34 4455555554 23 5555555545555543 222221111 111 122488887443
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
-+ +..++++.+...++|...+++.-.
T Consensus 77 a~-----q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 77 AY-----QLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred cc-----cHHHHHHHhhhcCCCCcEEEEEeC
Confidence 32 345789999999999988777543
No 448
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=43.64 E-value=1.3e+02 Score=27.47 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-----------C------------CCcEEEeCCCCCC
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-----------I------------PGVTHIGGDMFKS 153 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-----------~------------~~i~~~~~d~~~~ 153 (254)
..+|.=||+|+=...++..-...+.. ++++|. ++.++.+.. . .|++.. .|. +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~-~~ 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL-HA 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH-HH
Confidence 45677888874332222222223567 899998 776654311 1 234433 222 22
Q ss_pred CCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCC-----CChhhhhhcccch-Hh--hhhccccC
Q 025363 154 IPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDS-----NESQRTRALLEGD-IF--VMTIYRAK 225 (254)
Q Consensus 154 ~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-----~~~~~~~~~~~~~-~~--~~~~~~~~ 225 (254)
+.++|+|+.. +..+. +-...+++++.+.++|+..|......++... ..+....-.++++ .. -+. ....
T Consensus 82 l~~aDlVIEa-v~E~~--~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~Lv-Evv~ 157 (503)
T TIGR02279 82 LADAGLVIEA-IVENL--EVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALV-EVVS 157 (503)
T ss_pred hCCCCEEEEc-CcCcH--HHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceE-EEeC
Confidence 4456988864 22222 3345678888888877655433222222110 0000000111111 00 011 1122
Q ss_pred c---eecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 226 G---NHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 226 ~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
| ..-+.+....+++.-|-..+.+...+|+
T Consensus 158 g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf 189 (503)
T TIGR02279 158 GLATAAEVAEQLYETALAWGKQPVHCHSTPGF 189 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc
Confidence 3 2234567788899999888887766764
No 449
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=43.64 E-value=38 Score=29.02 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=24.8
Q ss_pred CCCeEEEecCcccHHHHH--HHHHcCCCCeEEEeec
Q 025363 97 GVKRLVDVGGSAGDCLRM--ILQKHRFICEGINFDL 130 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~~~--l~~~~~~~~~~~~~D~ 130 (254)
.+-+||-||||+|..+.+ +.++++..+ +.++|.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~-vgIvep 72 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGS-VGIVEP 72 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCc-eEEecc
Confidence 456899999999986654 777887766 666653
No 450
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=43.57 E-value=31 Score=26.62 Aligned_cols=56 Identities=13% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHHHHhCCCCeeeE
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQLGFFAGFPHLRL 248 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 248 (254)
|......++++++.+.++||..+++.+. +.. .. .. .....+...|++.||+.+.+
T Consensus 133 ~~~~~~~~i~~~~~~~~~~g~Iil~Hd~---~~~--~~--------t~------------~~l~~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 133 WKNPGVESIVDRVVKNTKPGDIILLHAS---DSA--KQ--------TV------------KALPTIIKKLKEKGYEFVTI 187 (191)
T ss_pred cCCCCHHHHHHHHHhcCCCCCEEEEeCC---CCc--Hh--------HH------------HHHHHHHHHHHHCCCEEEEH
Confidence 3333445788888889999988888752 110 00 00 12345677888999987765
Q ss_pred E
Q 025363 249 Y 249 (254)
Q Consensus 249 ~ 249 (254)
.
T Consensus 188 ~ 188 (191)
T TIGR02764 188 S 188 (191)
T ss_pred H
Confidence 4
No 451
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=43.05 E-value=64 Score=28.71 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=49.2
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
.+.+|+=+|+|. |......++.+ +.+ ++++|. +.-...+.. ....+. ++.+....+|+|+..-. .
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~-ViV~d~dp~ra~~A~~-~G~~v~--~l~eal~~aDVVI~aTG--------~ 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GAR-VIVTEVDPICALQAAM-DGFRVM--TMEEAAELGDIFVTATG--------N 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEcCCchhhHHHHh-cCCEec--CHHHHHhCCCEEEECCC--------C
Confidence 577899998763 44444445444 457 898887 433322222 122221 22222445699876321 1
Q ss_pred HHHHH-HHHHhCCCCCEEEEEcc
Q 025363 175 KLIME-NCYKALPAGGKLIACEP 196 (254)
Q Consensus 175 ~~il~-~~~~~L~pgG~l~i~d~ 196 (254)
..++. ...+.||+|+.++..-.
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCC
Confidence 23454 67888999998876543
No 452
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.91 E-value=1.5e+02 Score=23.19 Aligned_cols=63 Identities=17% Similarity=0.049 Sum_probs=34.7
Q ss_pred CCCeEEEecCcccHHH--HHHHHHcCCCCeEEEeec---hHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEec
Q 025363 97 GVKRLVDVGGSAGDCL--RMILQKHRFICEGINFDL---PEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMK 163 (254)
Q Consensus 97 ~~~~vlDvG~G~G~~~--~~l~~~~~~~~~~~~~D~---~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~ 163 (254)
.+.+||=||||.=... ..|++. +.+ +++++. ++..+.+.. ..+.+....+... +..+|+|++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~-V~VIs~~~~~~l~~l~~~-~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAH-IVVISPELTENLVKLVEE-GKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCe-EEEEcCCCCHHHHHHHhC-CCEEEEecCCChhhcCCceEEEEc
Confidence 3678999998754332 234443 345 666653 232222222 5677766555443 5556888774
No 453
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=42.37 E-value=1e+02 Score=25.09 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=42.2
Q ss_pred CeEEEecCcc--cHHHHHHHHHc-CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHH
Q 025363 99 KRLVDVGGSA--GDCLRMILQKH-RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 99 ~~vlDvG~G~--G~~~~~l~~~~-~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~ 174 (254)
.+|.=||||. +.++..+.+.. +... +.++|. ++..+.....-.+.. ..+..+....+|+|++. .++...
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~-v~v~~r~~~~~~~~~~~~g~~~-~~~~~~~~~~advVil~-----v~~~~~ 75 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKD-IIVSDPSPEKRAALAEEYGVRA-ATDNQEAAQEADVVVLA-----VKPQVM 75 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcce-EEEEcCCHHHHHHHHHhcCCee-cCChHHHHhcCCEEEEE-----cCHHHH
Confidence 3577788764 33444454442 1135 777887 554444333212322 11211113345888863 255667
Q ss_pred HHHHHHHHHhC
Q 025363 175 KLIMENCYKAL 185 (254)
Q Consensus 175 ~~il~~~~~~L 185 (254)
.++++.+...+
T Consensus 76 ~~v~~~l~~~~ 86 (267)
T PRK11880 76 EEVLSELKGQL 86 (267)
T ss_pred HHHHHHHHhhc
Confidence 78888887766
No 454
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=42.17 E-value=1.1e+02 Score=27.16 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=58.3
Q ss_pred CCCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------CCcEEEeCCCCCC----CCC-ccEEEe
Q 025363 95 FKGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI------PGVTHIGGDMFKS----IPA-ADAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------~~i~~~~~d~~~~----~p~-~D~v~~ 162 (254)
..++.+|||..+-.|.=+..++....+.-.+++.|. ..-+...+.+ .+...+..|..+. +|. .|=|++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeee
Confidence 467899999999888877777766544211455563 2222222221 3344444555321 222 243332
Q ss_pred ----cc--------ccccCCH--------HHHHHHHHHHHHhCCCCCEEEEEccccCCC
Q 025363 163 ----KW--------VLTTWTD--------DECKLIMENCYKALPAGGKLIACEPVLPDD 201 (254)
Q Consensus 163 ----~~--------vlh~~~~--------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 201 (254)
+. .+.-+.. .--.++|-.+.+.++|||+|+.....+...
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE 377 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh
Confidence 11 1111110 112468888999999999999887665433
No 455
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=42.08 E-value=2.1e+02 Score=24.12 Aligned_cols=94 Identities=10% Similarity=0.126 Sum_probs=43.5
Q ss_pred eEEEecC-cc-cHHHHHHHHHcCCC-CeEEEeechHHHhhCCCC-----------C-CcEEEe-CCCCCCCCCccEEEec
Q 025363 100 RLVDVGG-SA-GDCLRMILQKHRFI-CEGINFDLPEVVAEAPSI-----------P-GVTHIG-GDMFKSIPAADAIFMK 163 (254)
Q Consensus 100 ~vlDvG~-G~-G~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~-----------~-~i~~~~-~d~~~~~p~~D~v~~~ 163 (254)
+|.=+|+ |. |......+...+.. + ++++|.++..+.+... + ..++.. .| .+.+.++|+|++.
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~-v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKE-INLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCE-EEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 5666775 43 44444444443333 4 7888873322222110 1 122222 23 2235567998875
Q ss_pred cccccCCH-----------HHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 164 WVLTTWTD-----------DECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 164 ~vlh~~~~-----------~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
--.-.-++ +-..++.+++.+.. |.+++++.-.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~n 122 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTN 122 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 54322111 11333444444443 6788877653
No 456
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=42.03 E-value=1.4e+02 Score=25.59 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=46.4
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHH
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK 175 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~ 175 (254)
+++|.=||+|. |......++.+ +.+ ++++|. +..... .+.+ ..++.+-+..+|+|++.--+. ++...
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G~~-V~~~d~~~~~~~~-----~~~~-~~~l~ell~~aDiVil~lP~t---~~t~~ 214 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-GAT-ITAYDAYPNKDLD-----FLTY-KDSVKEAIKDADIISLHVPAN---KESYH 214 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEeCChhHhhh-----hhhc-cCCHHHHHhcCCEEEEeCCCc---HHHHH
Confidence 46788888775 44333444443 557 899997 432111 1111 112211245569988755443 23334
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 025363 176 LIMENCYKALPAGGKLIA 193 (254)
Q Consensus 176 ~il~~~~~~L~pgG~l~i 193 (254)
.+.++..+.||||..|+-
T Consensus 215 li~~~~l~~mk~gavlIN 232 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVN 232 (330)
T ss_pred HHhHHHHhcCCCCcEEEE
Confidence 566788888998875443
No 457
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=42.02 E-value=16 Score=24.45 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHc--CC---CCeEEEe-ec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHHHHH
Q 025363 107 SAGDCLRMILQKH--RF---ICEGINF-DL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME 179 (254)
Q Consensus 107 G~G~~~~~l~~~~--~~---~~~~~~~-D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~il~ 179 (254)
|.|..+..+++.+ .+ .+ +... +. ++-.+...+...+.+...+..+-...+|+|++.- ++....++++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav-----~p~~~~~v~~ 79 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHE-VIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAV-----KPQQLPEVLS 79 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGE-EEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S------GGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCcee-EEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEE-----CHHHHHHHHH
Confidence 4455555555442 11 34 6534 76 6655554433345544433322234459988743 4556678888
Q ss_pred HHHHhCCCCCEEE
Q 025363 180 NCYKALPAGGKLI 192 (254)
Q Consensus 180 ~~~~~L~pgG~l~ 192 (254)
++ ..+.++..++
T Consensus 80 ~i-~~~~~~~~vi 91 (96)
T PF03807_consen 80 EI-PHLLKGKLVI 91 (96)
T ss_dssp HH-HHHHTTSEEE
T ss_pred HH-hhccCCCEEE
Confidence 88 5555555443
No 458
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.90 E-value=97 Score=26.26 Aligned_cols=94 Identities=18% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCC---cEEEeCCCCCC----CCC--ccEEEec
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPG---VTHIGGDMFKS----IPA--ADAIFMK 163 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~---i~~~~~d~~~~----~p~--~D~v~~~ 163 (254)
..++.+||=.|+| .|..+..+++...-.. ++..|. ++-.+.+++..- +.....++.+. .+. .|+++-.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~-v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGR-IIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence 5667788888765 5667777777764335 677776 544444333211 11111111111 121 2777642
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCCCEEEEEccc
Q 025363 164 WVLTTWTDDECKLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 164 ~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.. . ...+..+.++|+++|+++.....
T Consensus 243 ~g-----~---~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 243 GG-----G---QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred CC-----C---HHHHHHHHHHhhcCCEEEEeccc
Confidence 11 1 24578889999999999876543
No 459
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=41.88 E-value=48 Score=30.36 Aligned_cols=86 Identities=20% Similarity=0.153 Sum_probs=43.7
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+++|.=||.|. |......++.+ +.+ ++++|...-.+.... ..+.+. +..+.++.+|+|++.--+. ++...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G~~-V~~~d~~~~~~~~~~-~g~~~~--~l~ell~~aDiV~l~lP~t----~~t~~ 210 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-GMK-VIAYDPYISPERAAQ-LGVELV--SLDELLARADFITLHTPLT----PETRG 210 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEECCCCChhHHHh-cCCEEE--cHHHHHhhCCEEEEccCCC----hHhhc
Confidence 56788887653 44444444443 557 888986211111111 223333 3322255668888754432 22333
Q ss_pred HH-HHHHHhCCCCCEEE
Q 025363 177 IM-ENCYKALPAGGKLI 192 (254)
Q Consensus 177 il-~~~~~~L~pgG~l~ 192 (254)
++ ++....||||..|+
T Consensus 211 li~~~~l~~mk~ga~lI 227 (526)
T PRK13581 211 LIGAEELAKMKPGVRII 227 (526)
T ss_pred CcCHHHHhcCCCCeEEE
Confidence 44 45666777776544
No 460
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=40.93 E-value=1.1e+02 Score=22.47 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=49.2
Q ss_pred eEEEecC-c-ccHHHHHHHHHcCCCCeEEEeech-HHHhh-CCCC------C--CcEEEeCCCCCCCCCccEEEeccccc
Q 025363 100 RLVDVGG-S-AGDCLRMILQKHRFICEGINFDLP-EVVAE-APSI------P--GVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 100 ~vlDvG~-G-~G~~~~~l~~~~~~~~~~~~~D~~-~~~~~-~~~~------~--~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
+|.=||+ | .|......+...+-....+.+|.. ...+. +.+. . ++.... +-.+.+.++|+|++..-..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEecccc
Confidence 5667777 4 555555555555443337888984 32221 1110 1 233333 4444466679988755443
Q ss_pred cCC---H----HHHHHHHHHHHHhC---CCCCEEEEEc
Q 025363 168 TWT---D----DECKLIMENCYKAL---PAGGKLIACE 195 (254)
Q Consensus 168 ~~~---~----~~~~~il~~~~~~L---~pgG~l~i~d 195 (254)
.-+ . +...++++++.+.+ .|.|.+++..
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 222 1 23344555555444 3788888753
No 461
>PLN02827 Alcohol dehydrogenase-like
Probab=40.82 E-value=1.9e+02 Score=24.99 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC-----CCCCC----CCC-ccEEEe
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG-----DMFKS----IPA-ADAIFM 162 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~-----d~~~~----~p~-~D~v~~ 162 (254)
..++.+||=+|+| -|..+..+++...-.. +++.|. ++-.+.+++..--.++.. ++.+. .+. .|+++-
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~-vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQ-IIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 5667888888754 5667777777764335 677775 655555443311111111 11000 111 276664
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCC-CEEEEEcc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAG-GKLIACEP 196 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pg-G~l~i~d~ 196 (254)
.-. . ...+....+.+++| |++++.-.
T Consensus 270 ~~G-----~---~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG-----D---TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCC-----C---hHHHHHHHHhhccCCCEEEEECC
Confidence 221 1 13567788889998 99987654
No 462
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=40.73 E-value=38 Score=28.88 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCeEEEecCcccHHHHHHHHHc--CCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCC-CCCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKH--RFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~vlh~~~~~~~ 174 (254)
++++-=| |.|....+++++. -+.+ +..+|.... ....+..+..+.. +++ +.++|+|.+.--+. ++.-
T Consensus 146 gktvGIi--G~GrIG~avA~r~~~Fgm~-v~y~~~~~~-~~~~~~~~~~y~~---l~ell~~sDii~l~~Plt---~~T~ 215 (324)
T COG1052 146 GKTLGII--GLGRIGQAVARRLKGFGMK-VLYYDRSPN-PEAEKELGARYVD---LDELLAESDIISLHCPLT---PETR 215 (324)
T ss_pred CCEEEEE--CCCHHHHHHHHHHhcCCCE-EEEECCCCC-hHHHhhcCceecc---HHHHHHhCCEEEEeCCCC---hHHh
Confidence 4555555 4555555555543 3567 888887322 2222222344443 233 55569888766554 2222
Q ss_pred HHHHHHHHHhCCCCCEEE
Q 025363 175 KLIMENCYKALPAGGKLI 192 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~ 192 (254)
--+=++..+.||||+.|+
T Consensus 216 hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 216 HLINAEELAKMKPGAILV 233 (324)
T ss_pred hhcCHHHHHhCCCCeEEE
Confidence 233356677788887654
No 463
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=40.50 E-value=42 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCCCCCeEEEecCcccHHHHHHHHHc
Q 025363 85 MTSVLEGYNGFKGVKRLVDVGGSAGDCLRMILQKH 119 (254)
Q Consensus 85 ~~~i~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~ 119 (254)
.+.|++.-. .-...-|.+||.|.|..+..++++.
T Consensus 39 T~KIvK~A~-~~~~~~v~eIgPgpggitR~il~a~ 72 (326)
T KOG0821|consen 39 TDKIVKKAG-NLTNAYVYEIGPGPGGITRSILNAD 72 (326)
T ss_pred HHHHHHhcc-ccccceeEEecCCCCchhHHHHhcc
Confidence 445555442 3446789999999999999999773
No 464
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=39.88 E-value=1.9e+02 Score=26.37 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=74.5
Q ss_pred CCeEEEecCccc--HHHHHHHHHcCCCCeEEEeec-hHHHhhCC-----------CC------------CCcEEEeCCCC
Q 025363 98 VKRLVDVGGSAG--DCLRMILQKHRFICEGINFDL-PEVVAEAP-----------SI------------PGVTHIGGDMF 151 (254)
Q Consensus 98 ~~~vlDvG~G~G--~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-----------~~------------~~i~~~~~d~~ 151 (254)
-.+|-=||+|+= ..+..++++ +.. ++++|. ++.++.+. +. .|++... |.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a--G~~-V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~-~~- 81 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA--GHT-VLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVE-AL- 81 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CH-
Confidence 456777887632 233333333 667 999998 77666531 11 3455432 32
Q ss_pred CCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhh---hh--hcccch-Hh--hhhccc
Q 025363 152 KSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR---TR--ALLEGD-IF--VMTIYR 223 (254)
Q Consensus 152 ~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~---~~--~~~~~~-~~--~~~~~~ 223 (254)
+...++|+|+.. +..+. +--..+++++.+.++|+..|......++...-.... .+ -...++ .. .+. ..
T Consensus 82 ~~~~~aDlViEa-v~E~~--~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~Lv-Ev 157 (507)
T PRK08268 82 ADLADCDLVVEA-IVERL--DVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLV-EV 157 (507)
T ss_pred HHhCCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeE-EE
Confidence 224456988864 33322 223466788888888776555433333211000000 00 111122 00 011 11
Q ss_pred cCc---eecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 224 AKG---NHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 224 ~~~---~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
..| ..-+.+....++++-|-..+.+...+|+
T Consensus 158 v~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf 191 (507)
T PRK08268 158 VSGLATDPAVADALYALARAWGKTPVRAKDTPGF 191 (507)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh
Confidence 122 2335667778888989888877666663
No 465
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=39.69 E-value=33 Score=25.45 Aligned_cols=41 Identities=10% Similarity=-0.065 Sum_probs=27.4
Q ss_pred ecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEE
Q 025363 104 VGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTH 145 (254)
Q Consensus 104 vG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 145 (254)
+.||||.=..-.+.++|+++ +..+--+.....++..++.+.
T Consensus 62 liCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNv 102 (143)
T TIGR01120 62 LICGTGIGMSIAANKFAGIR-AALCSEPYMAQMSRLHNDANV 102 (143)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcE
Confidence 45889987788899999998 665544555555554444333
No 466
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=39.55 E-value=2.3e+02 Score=23.77 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=49.3
Q ss_pred CeEEEecCc-ccH-HHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe-CC-------CCCC--CCCccEEEeccc
Q 025363 99 KRLVDVGGS-AGD-CLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG-GD-------MFKS--IPAADAIFMKWV 165 (254)
Q Consensus 99 ~~vlDvG~G-~G~-~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~-~d-------~~~~--~p~~D~v~~~~v 165 (254)
++|+=+|+| -|. ++..|.+. +.. ++.++. ++-++..++...+.... ++ ...+ .+..|+|++.-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~-V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLP-VRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCC-eEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECC
Confidence 468888876 455 44445544 346 888887 44555444322222211 11 0011 122487776332
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 166 LTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 166 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
-+ +...+++.++..+.|+..++..-.
T Consensus 80 ~~-----~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 80 AY-----DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred HH-----hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 22 235778899999999988776543
No 467
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.39 E-value=1e+02 Score=26.05 Aligned_cols=110 Identities=7% Similarity=-0.049 Sum_probs=54.1
Q ss_pred CCcEEEeC-CCCCCCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhh
Q 025363 141 PGVTHIGG-DMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM 219 (254)
Q Consensus 141 ~~i~~~~~-d~~~~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
.|+++..- |..+...++|+|+-. +..+. +--..+++++-+.++|+..|.......+...-............++.+
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEa-v~E~~--~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~ 139 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEA-VPEVL--DAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWL 139 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEEC-CcCCH--HHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecC
Confidence 45665532 111224446988864 33332 344678999999999998774332222210000000000011111111
Q ss_pred h----------ccccCceecCHHHHHHHHHhCCCCeeeEEEccC
Q 025363 220 T----------IYRAKGNHRTEQEFKQLGFFAGFPHLRLYRVLD 253 (254)
Q Consensus 220 ~----------~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 253 (254)
. +...++..-+.+....+++.-|-..+.+...+|
T Consensus 140 ~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G 183 (314)
T PRK08269 140 NPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG 183 (314)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 0 001112223456778889999988888777665
No 468
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=39.29 E-value=33 Score=25.46 Aligned_cols=41 Identities=12% Similarity=-0.110 Sum_probs=27.6
Q ss_pred ecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEE
Q 025363 104 VGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTH 145 (254)
Q Consensus 104 vG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 145 (254)
+.||||.=..-.+.++|+++ +..+--+.....++..++.++
T Consensus 61 liCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNV 101 (144)
T TIGR00689 61 LICGTGIGMSIAANKFKGIR-AALCVDEYTAALARQHNDANV 101 (144)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcE
Confidence 45899988888899999998 655544555555554443333
No 469
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=39.09 E-value=1.2e+02 Score=25.69 Aligned_cols=96 Identities=14% Similarity=0.257 Sum_probs=46.6
Q ss_pred eEEEecC-cc-cHHHHHHHHHcCCCCeEEEeechHHHhhCCCC----CCcEEEe--CC--CCCCCCCccEEEeccccccC
Q 025363 100 RLVDVGG-SA-GDCLRMILQKHRFICEGINFDLPEVVAEAPSI----PGVTHIG--GD--MFKSIPAADAIFMKWVLTTW 169 (254)
Q Consensus 100 ~vlDvG~-G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~----~~i~~~~--~d--~~~~~p~~D~v~~~~vlh~~ 169 (254)
+|.=||+ |. |......+...+-....+.+|..+....+.+. .++.... ++ ..+.+.++|+|++..-.-.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 3556776 54 55444444333322227888884421111111 2234432 22 23346667988875544222
Q ss_pred CH-------HHHHHHHHHHHHhC---CCCCEEEEEc
Q 025363 170 TD-------DECKLIMENCYKAL---PAGGKLIACE 195 (254)
Q Consensus 170 ~~-------~~~~~il~~~~~~L---~pgG~l~i~d 195 (254)
+. ....++++++.+.+ .|++.+++..
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 21 12334555555544 4889887754
No 470
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.62 E-value=2.2e+02 Score=23.39 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=72.4
Q ss_pred CeEEEecCc--ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-----------CC------------CCcEEEeCCCCC
Q 025363 99 KRLVDVGGS--AGDCLRMILQKHRFICEGINFDL-PEVVAEAP-----------SI------------PGVTHIGGDMFK 152 (254)
Q Consensus 99 ~~vlDvG~G--~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-----------~~------------~~i~~~~~d~~~ 152 (254)
.+|.=||+| .+..+..++++ +.+ ++++|. ++.++.++ +. .++++. .|. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~-V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~-~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYD-VVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL-D 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCc-eEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H
Confidence 357778887 34444445444 456 888997 66554221 11 134332 232 2
Q ss_pred CCCCccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhh---hhhcccchHh-----hhhc--c
Q 025363 153 SIPAADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQR---TRALLEGDIF-----VMTI--Y 222 (254)
Q Consensus 153 ~~p~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~---~~~~~~~~~~-----~~~~--~ 222 (254)
...++|+|+..-.=. .+....+++++.+.++|+..|...-...+...-.... .+....+-+. .+.. .
T Consensus 79 ~~~~aDlVi~av~e~---~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~ 155 (282)
T PRK05808 79 DLKDADLVIEAATEN---MDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIR 155 (282)
T ss_pred HhccCCeeeeccccc---HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeC
Confidence 244459888743110 1233589999999999887653322111100000000 0000000000 0000 0
Q ss_pred ccCceecCHHHHHHHHHhCCCCeeeEEEccCC
Q 025363 223 RAKGNHRTEQEFKQLGFFAGFPHLRLYRVLDY 254 (254)
Q Consensus 223 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 254 (254)
..+...-+.+...++++..|...+.+...+|+
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~ 187 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAPGF 187 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCccCh
Confidence 01111224567788999999998888777764
No 471
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.59 E-value=1.7e+02 Score=21.90 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=38.2
Q ss_pred ecCcccHHHHHHHHHc--CCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCC--C----CCccEEEeccc
Q 025363 104 VGGSAGDCLRMILQKH--RFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKS--I----PAADAIFMKWV 165 (254)
Q Consensus 104 vG~G~G~~~~~l~~~~--~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~--~----p~~D~v~~~~v 165 (254)
|=||+|..+..+++.. .+.+ ++++-. ++-.+. ..+++.+.+|+++. + .+.|.|+....
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred EECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 3467888777777764 2345 777766 543443 57899999999876 2 23488776553
No 472
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=38.21 E-value=2.5e+02 Score=23.78 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=45.1
Q ss_pred CeEEEecCcc-c-HHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEE----------------eCCCCCCCCCccEE
Q 025363 99 KRLVDVGGSA-G-DCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHI----------------GGDMFKSIPAADAI 160 (254)
Q Consensus 99 ~~vlDvG~G~-G-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~----------------~~d~~~~~p~~D~v 160 (254)
++|.=||+|. | .++..++++ +.. ++++|.+...+..++. .+.+. ..+. +....+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~--G~~-V~~~~r~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA--GAD-VTLIGRARIGDELRAH-GLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCc-EEEEecHHHHHHHHhc-CceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 4677788773 3 334444444 346 8888884433332221 11110 1111 112335888
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~ 194 (254)
++.-- ..+...+++.+...++++..++..
T Consensus 78 il~vk-----~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 78 LVTVK-----SAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred EEEec-----CcchHHHHHHHHhhCCCCCEEEEe
Confidence 86432 223457788888888887765544
No 473
>PLN02712 arogenate dehydrogenase
Probab=38.19 E-value=1.4e+02 Score=28.47 Aligned_cols=82 Identities=11% Similarity=0.020 Sum_probs=45.1
Q ss_pred CCeEEEecCcc--cHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCC-CCccEEEeccccccCCHHHH
Q 025363 98 VKRLVDVGGSA--GDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSI-PAADAIFMKWVLTTWTDDEC 174 (254)
Q Consensus 98 ~~~vlDvG~G~--G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~-p~~D~v~~~~vlh~~~~~~~ 174 (254)
..+|.=||+|. +.++..+.+. +.+ ++++|.....+.+++. .+.+ ..|..+.. ..+|+|++.- ++...
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~--G~~-V~~~dr~~~~~~A~~~-Gv~~-~~d~~e~~~~~aDvViLav-----P~~~~ 121 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ--GHT-VLAHSRSDHSLAARSL-GVSF-FLDPHDLCERHPDVILLCT-----SIIST 121 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCE-EEEEeCCHHHHHHHHc-CCEE-eCCHHHHhhcCCCEEEEcC-----CHHHH
Confidence 46788898763 3444444443 346 8888874333333322 2332 12222112 2359988743 44566
Q ss_pred HHHHHHHH-HhCCCCC
Q 025363 175 KLIMENCY-KALPAGG 189 (254)
Q Consensus 175 ~~il~~~~-~~L~pgG 189 (254)
..+++++. ..++||.
T Consensus 122 ~~vl~~l~~~~l~~g~ 137 (667)
T PLN02712 122 ENVLKSLPLQRLKRNT 137 (667)
T ss_pred HHHHHhhhhhcCCCCe
Confidence 77788775 5677776
No 474
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.09 E-value=2e+02 Score=24.53 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=46.9
Q ss_pred CeEEEecC-cc-cHHHHHHHHHcCCC-------CeEEEeechHHHhhCCCC------------CCcEEEeCCCCCCCCCc
Q 025363 99 KRLVDVGG-SA-GDCLRMILQKHRFI-------CEGINFDLPEVVAEAPSI------------PGVTHIGGDMFKSIPAA 157 (254)
Q Consensus 99 ~~vlDvG~-G~-G~~~~~l~~~~~~~-------~~~~~~D~~~~~~~~~~~------------~~i~~~~~d~~~~~p~~ 157 (254)
.+|.=||+ |. |......+. ..++ + .+++|..+..+.++.. .++++.. +-.+++.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~e-l~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~da 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVI-LQLLELPQALKALEGVAMELEDCAFPLLAEIVITD-DPNVAFKDA 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHH-hccccCCCCceE-EEEEecCCcccccceeehhhhhccccccCceEEec-CcHHHhCCC
Confidence 47778887 54 443333222 1122 4 7888874333222110 2244432 223345667
Q ss_pred cEEEeccccccCCH-------HHHHHHHHHHHHhC----CCCCEEEEEc
Q 025363 158 DAIFMKWVLTTWTD-------DECKLIMENCYKAL----PAGGKLIACE 195 (254)
Q Consensus 158 D~v~~~~vlh~~~~-------~~~~~il~~~~~~L----~pgG~l~i~d 195 (254)
|+|++..-.-.-+. ....++++++...+ +|.|++++..
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 99887554432222 12345555555555 3588888764
No 475
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=38.05 E-value=1.6e+02 Score=21.41 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=46.9
Q ss_pred cEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEccccCCCCCChhhhhhcccchHhhhhccccCceecCHHHHHHH
Q 025363 158 DAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGNHRTEQEFKQL 237 (254)
Q Consensus 158 D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 237 (254)
|+|++-+-- .+.+....|-.+.+.|..+|.++++.+-.... ...++.++.+.
T Consensus 47 D~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~-------------------------g~V~~~~I~ea 98 (127)
T PF11253_consen 47 DVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKAGRP-------------------------GHVEPSDIREA 98 (127)
T ss_pred cEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCCCCC-------------------------CCCCHHHHHHH
Confidence 887764432 34577888999999999999999976432111 12367788888
Q ss_pred HHhCCCCeeeEEEc
Q 025363 238 GFFAGFPHLRLYRV 251 (254)
Q Consensus 238 l~~aGf~~~~~~~~ 251 (254)
...+|+...+...+
T Consensus 99 A~taGL~~t~~~~v 112 (127)
T PF11253_consen 99 APTAGLVQTKSCAV 112 (127)
T ss_pred HhhcCCeeeeeecc
Confidence 99999987776554
No 476
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=37.74 E-value=28 Score=25.71 Aligned_cols=39 Identities=13% Similarity=-0.140 Sum_probs=24.4
Q ss_pred EEecCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCC
Q 025363 102 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIP 141 (254)
Q Consensus 102 lDvG~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 141 (254)
-=+.||||.=..-.+.++|+++ +..+.-+.....+++.+
T Consensus 60 GIliCgtGiG~~iaANK~~GIr-Aa~~~d~~~A~~ar~hN 98 (140)
T PF02502_consen 60 GILICGTGIGMSIAANKVPGIR-AALCSDPYSAKMAREHN 98 (140)
T ss_dssp EEEEESSSHHHHHHHHTSTT---EEE-SSHHHHHHHHHTT
T ss_pred EEEEcCCChhhhhHhhcCCCEE-EEeeCCHHHHHHHHHhc
Confidence 3346888888888999999999 76555455444444443
No 477
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.72 E-value=2.1e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=24.1
Q ss_pred CccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 156 AADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 156 ~~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.+|+|++.- ++.....+++.+...++|+..++.+-
T Consensus 71 ~~D~vi~~v-----~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 71 DADLILVAV-----PSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred CCCEEEEeC-----CHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 348887643 33456788888888888887666543
No 478
>PRK06487 glycerate dehydrogenase; Provisional
Probab=37.46 E-value=58 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=20.1
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeech
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDLP 131 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~~ 131 (254)
+++|.=||.|. |......++.+ +.+ ++++|.+
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-gm~-V~~~~~~ 180 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-GMR-VLIGQLP 180 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-CCE-EEEECCC
Confidence 46777777653 55555555544 567 8888863
No 479
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=37.41 E-value=1.4e+02 Score=25.08 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=47.6
Q ss_pred CCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCC-CCCCCCCccEEEeccccccCCHHH
Q 025363 97 GVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGD-MFKSIPAADAIFMKWVLTTWTDDE 173 (254)
Q Consensus 97 ~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d-~~~~~p~~D~v~~~~vlh~~~~~~ 173 (254)
.+.+++=||.| .|..+...++.. +.+ ++++|. ++..+.++.. ..++...+ ..+.+.++|+|+..- +.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~-V~v~~r~~~~~~~~~~~-G~~~~~~~~l~~~l~~aDiVI~t~-----p~-- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GAN-VTVGARKSAHLARITEM-GLSPFHLSELAEEVGKIDIIFNTI-----PA-- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHc-CCeeecHHHHHHHhCCCCEEEECC-----Ch--
Confidence 46899999875 445555555555 457 899998 5554444332 23332211 111134569998742 11
Q ss_pred HHHHHHHHHHhCCCCCEEE
Q 025363 174 CKLIMENCYKALPAGGKLI 192 (254)
Q Consensus 174 ~~~il~~~~~~L~pgG~l~ 192 (254)
.-+-+...+.|+||+.++
T Consensus 221 -~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALII 238 (296)
T ss_pred -hhhhHHHHHcCCCCcEEE
Confidence 123356667789987544
No 480
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=37.35 E-value=62 Score=28.31 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=22.9
Q ss_pred CCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec
Q 025363 97 GVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 97 ~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
.+++|-=||.|. |......++.+ +.+ ++++|.
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G~~-V~~~dp 147 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-GIK-TLLCDP 147 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCE-EEEECC
Confidence 467888888764 66666666665 567 888985
No 481
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.92 E-value=2.1e+02 Score=25.45 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=47.4
Q ss_pred CeEEEecCcccHHHHHHHHHcC-CCCeEEEeec-hHHHhhCCCCC---------------CcEEEeCCCCCCCCCccEEE
Q 025363 99 KRLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVAEAPSIP---------------GVTHIGGDMFKSIPAADAIF 161 (254)
Q Consensus 99 ~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~~D~-~~~~~~~~~~~---------------~i~~~~~d~~~~~p~~D~v~ 161 (254)
++|-=||-| ..+..++..+. +.+ ++++|. ++.++...... ++.+. .+ .+...++|+|+
T Consensus 7 mkI~vIGlG--yvGlpmA~~la~~~~-V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~-~~~~~~advvi 81 (425)
T PRK15182 7 VKIAIIGLG--YVGLPLAVEFGKSRQ-VVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SE-IEKIKECNFYI 81 (425)
T ss_pred CeEEEECcC--cchHHHHHHHhcCCE-EEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eC-HHHHcCCCEEE
Confidence 567667554 44433333332 345 999998 77666655321 11111 11 11123458877
Q ss_pred eccc--ccc---CCHHHHHHHHHHHHHhCCCCCEEEEEccccC
Q 025363 162 MKWV--LTT---WTDDECKLIMENCYKALPAGGKLIACEPVLP 199 (254)
Q Consensus 162 ~~~v--lh~---~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 199 (254)
+.-- .+. ..-.......+.+.+.|++|.. +|.+.+.+
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~l-VI~~STv~ 123 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGDI-VVYESTVY 123 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCE-EEEecCCC
Confidence 5322 111 1113444556788888888654 45444443
No 482
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=36.69 E-value=1.6e+02 Score=24.66 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=42.8
Q ss_pred EecCcc-cHHHHHHHHHcCC-CCeEEEeec-hHHHhh-CCCC-------CCcEEEe-CCCCCCCCCccEEEeccccccC-
Q 025363 103 DVGGSA-GDCLRMILQKHRF-ICEGINFDL-PEVVAE-APSI-------PGVTHIG-GDMFKSIPAADAIFMKWVLTTW- 169 (254)
Q Consensus 103 DvG~G~-G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~-~~~~-------~~i~~~~-~d~~~~~p~~D~v~~~~vlh~~- 169 (254)
=||+|. |......+...+- .+ ++++|. ++.... +.+. ....+.. .| .+.+.++|+|++..-.-.-
T Consensus 3 iiGaG~VG~~~a~~l~~~~~~~e-l~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 3 IIGAGNVGAAVAFALIAKGLASE-LVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRKP 80 (300)
T ss_pred EECCCHHHHHHHHHHHhcCCCCE-EEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCCC
Confidence 367765 4444443333332 24 788887 432221 1111 1233332 33 2345667998875543211
Q ss_pred --CHH----HHHHHHHHHHHhCC---CCCEEEEEc
Q 025363 170 --TDD----ECKLIMENCYKALP---AGGKLIACE 195 (254)
Q Consensus 170 --~~~----~~~~il~~~~~~L~---pgG~l~i~d 195 (254)
+.. ....+++++.+.++ |.|++++..
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 111 13344444444432 889888754
No 483
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=36.62 E-value=1.3e+02 Score=25.51 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCeEEEecCcccHHHHHHHHHcCCCCeEEEeec--hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHH-HH
Q 025363 98 VKRLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDD-EC 174 (254)
Q Consensus 98 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~--~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~-~~ 174 (254)
+++|.=||+|.=..+....-...+.+ +++.+. +...+.+.+ ..+.. .+..+....+|+|++.- +++ ..
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~~~~~~~~~~a~~-~Gv~~--~s~~ea~~~ADiVvLaV-----pp~~~~ 73 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLN-VIVGLRKGGASWKKATE-DGFKV--GTVEEAIPQADLIMNLL-----PDEVQH 73 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEECcChhhHHHHHH-CCCEE--CCHHHHHhcCCEEEEeC-----CcHhHH
Confidence 46777788774332222221222445 555443 233333322 23332 23211144469988733 444 55
Q ss_pred HHHHHHHHHhCCCCCEEEEE
Q 025363 175 KLIMENCYKALPAGGKLIAC 194 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~ 194 (254)
..+++++...|++|-.|.+.
T Consensus 74 ~~v~~ei~~~l~~g~iVs~a 93 (314)
T TIGR00465 74 EVYEAEIQPLLKEGKTLGFS 93 (314)
T ss_pred HHHHHHHHhhCCCCcEEEEe
Confidence 66777898889888655554
No 484
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=36.38 E-value=1.2e+02 Score=26.32 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred EEEecCc-ccHHHHHHHHHcCCC-CeEEEeec-hHHHhh-CC--CCCCcEEEeCCCCCC--C----CCccEEEe
Q 025363 101 LVDVGGS-AGDCLRMILQKHRFI-CEGINFDL-PEVVAE-AP--SIPGVTHIGGDMFKS--I----PAADAIFM 162 (254)
Q Consensus 101 vlDvG~G-~G~~~~~l~~~~~~~-~~~~~~D~-~~~~~~-~~--~~~~i~~~~~d~~~~--~----p~~D~v~~ 162 (254)
|+=+||| .|..+...+.+.+.. + +++.|. .+-.+. +. ...++.+...|..+. + .++|+|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~-v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEE-VTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-E-EEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCc-EEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 4556663 455555555555544 6 888887 444333 32 337899999998765 2 23488885
No 485
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=36.37 E-value=40 Score=25.16 Aligned_cols=40 Identities=10% Similarity=-0.144 Sum_probs=27.6
Q ss_pred cCcccHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEE
Q 025363 105 GGSAGDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTH 145 (254)
Q Consensus 105 G~G~G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 145 (254)
-||||.=..-.+.++|+++ +..+.-+.....++..++.++
T Consensus 65 iCGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNV 104 (148)
T PRK05571 65 ICGTGIGMSIAANKVKGIR-AALCHDTYSAHLAREHNNANV 104 (148)
T ss_pred EcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcE
Confidence 4888888888899999998 766655555555555444333
No 486
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=36.13 E-value=1.6e+02 Score=24.77 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=45.5
Q ss_pred eEEEecCcc-cHHHHHHHHHcCC-CCeEEEeec-hHHHhhCCCC---------CCcEEEeCCCCCCCCCccEEEeccccc
Q 025363 100 RLVDVGGSA-GDCLRMILQKHRF-ICEGINFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIPAADAIFMKWVLT 167 (254)
Q Consensus 100 ~vlDvG~G~-G~~~~~l~~~~~~-~~~~~~~D~-~~~~~~~~~~---------~~i~~~~~d~~~~~p~~D~v~~~~vlh 167 (254)
+|.=||+|. |......+....- -+ ++++|. ++..+..... ..+.+..++. +.+.++|+|+..--.-
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~e-i~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADE-LVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCE-EEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 577788764 3333333333332 25 888887 4432221111 2233433332 2345569988754332
Q ss_pred cCC---H----HHHHHHHHHHHHhC---CCCCEEEEEc
Q 025363 168 TWT---D----DECKLIMENCYKAL---PAGGKLIACE 195 (254)
Q Consensus 168 ~~~---~----~~~~~il~~~~~~L---~pgG~l~i~d 195 (254)
.-+ . ....++++++.+.+ .|.|++++..
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111 1 12344555555554 4678877754
No 487
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=36.13 E-value=96 Score=26.15 Aligned_cols=37 Identities=22% Similarity=0.525 Sum_probs=29.6
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.|++++.+-=| ..+++..|.++.+.++|||.+++.-.
T Consensus 38 ~d~~l~~~pK~---~~e~e~qLa~ll~~~~~g~~i~v~g~ 74 (300)
T COG2813 38 FDAVLLYWPKH---KAEAEFQLAQLLARLPPGGEIVVVGE 74 (300)
T ss_pred CCEEEEEccCc---hHHHHHHHHHHHhhCCCCCeEEEEec
Confidence 38888765544 36788899999999999999998754
No 488
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=36.01 E-value=2.5e+02 Score=23.22 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=52.9
Q ss_pred CCCCCCeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEe---CCCCCC----CCCc-cEEEe
Q 025363 94 GFKGVKRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIG---GDMFKS----IPAA-DAIFM 162 (254)
Q Consensus 94 ~~~~~~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~---~d~~~~----~p~~-D~v~~ 162 (254)
...++.+||=.| +|.|..+..+++.. +++ ++..+. ++-.+.+++..--.++. .|+.+. .+.+ |+++-
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~-vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIK-GCK-VIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 356778888777 57888888899886 556 776665 54444443321111111 111111 1222 66653
Q ss_pred ccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 163 KWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 163 ~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
. . . ...++...+.|+++|+++...
T Consensus 218 ~--~---g----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 N--V---G----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--C---C----HHHHHHHHHhhccCCEEEEEc
Confidence 1 1 1 145678899999999998764
No 489
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.93 E-value=2e+02 Score=23.98 Aligned_cols=86 Identities=7% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCeEEEecCcccH--HHHHHHHHcCCCCeEEEeec-hHHHhhCCCC------------------CCcEEEeCCCCCCCCC
Q 025363 98 VKRLVDVGGSAGD--CLRMILQKHRFICEGINFDL-PEVVAEAPSI------------------PGVTHIGGDMFKSIPA 156 (254)
Q Consensus 98 ~~~vlDvG~G~G~--~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~------------------~~i~~~~~d~~~~~p~ 156 (254)
..+|.=||+|.=. .+..+++ .+.+ ++++|. ++.++.+++. .++++. .|..+...+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~ 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR--KGLQ-VVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVSG 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhcc
Confidence 3567788887433 3333433 3456 888997 5554443321 112221 122111334
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCE
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGK 190 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~ 190 (254)
+|+|+..-.-. .+....+++++...++++..
T Consensus 80 aDlVi~av~~~---~~~~~~v~~~l~~~~~~~~i 110 (311)
T PRK06130 80 ADLVIEAVPEK---LELKRDVFARLDGLCDPDTI 110 (311)
T ss_pred CCEEEEeccCc---HHHHHHHHHHHHHhCCCCcE
Confidence 59888743211 12245788888887776543
No 490
>PRK06932 glycerate dehydrogenase; Provisional
Probab=35.82 E-value=55 Score=27.75 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=19.4
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL 130 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~ 130 (254)
+++|.=||.|. |.....+++.+ +.+ ++++|.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g~~-V~~~~~ 178 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-GMK-VLYAEH 178 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-CCE-EEEECC
Confidence 46777787653 55555555544 567 888875
No 491
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=12 Score=33.50 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=62.4
Q ss_pred CCCCeEEEecCcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCC---C----CcEEEeCCCCCC-CCCccEEEecccc
Q 025363 96 KGVKRLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPSI---P----GVTHIGGDMFKS-IPAADAIFMKWVL 166 (254)
Q Consensus 96 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~---~----~i~~~~~d~~~~-~p~~D~v~~~~vl 166 (254)
.+..+|||-=|++|.-++..++..|++..+++.|+ +..++..+.+ + .++....|.-.- ....++--..+++
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 34678999999999999999999999864788888 7777666543 1 122222222111 0000111111222
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
|.=+--.+..+|..+.++++.||.|++.-.
T Consensus 188 DLDPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 211223456889999999999999998644
No 492
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=35.05 E-value=2.6e+02 Score=23.18 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCCCeEEEecCc-ccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeC---CCCCCCCC-ccEEEecccccc
Q 025363 95 FKGVKRLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGG---DMFKSIPA-ADAIFMKWVLTT 168 (254)
Q Consensus 95 ~~~~~~vlDvG~G-~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~---d~~~~~p~-~D~v~~~~vlh~ 168 (254)
..++.+||-+|+| .|..+..++++. +.+ ++..+. ++..+..++..--.+... +.....+. .|+++-..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~---- 233 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFE-TVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV---- 233 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC----
Confidence 5667788888876 777777777775 346 777665 544444322110011110 01000112 37766421
Q ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 169 WTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 169 ~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
.. ...+..+.+.|+++|+++....
T Consensus 234 -~~---~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 234 -VS---GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -Cc---HHHHHHHHHhcccCCEEEEECC
Confidence 11 1356778899999999987753
No 493
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=34.46 E-value=2.9e+02 Score=23.49 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCCCCeEEEecC--cccHHHHHHHHHcCCCCeEEEeec-hHHHhhCC-CCCCcEEEe---C-CCCCC----CCCc-cEE
Q 025363 94 GFKGVKRLVDVGG--SAGDCLRMILQKHRFICEGINFDL-PEVVAEAP-SIPGVTHIG---G-DMFKS----IPAA-DAI 160 (254)
Q Consensus 94 ~~~~~~~vlDvG~--G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~-~~~~i~~~~---~-d~~~~----~p~~-D~v 160 (254)
...++.+||=.|+ |.|..+.++++.. +.+ +++.+. ++-.+.++ +..--.++. . ++.+. .+.. |++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~-Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-GCY-VVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEE
Confidence 3567788888875 5888989999886 456 777765 54444332 211111111 1 11111 1222 776
Q ss_pred EeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEcc
Q 025363 161 FMKWVLTTWTDDECKLIMENCYKALPAGGKLIACEP 196 (254)
Q Consensus 161 ~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 196 (254)
+-. .. ...+..+.++|++||++++.-.
T Consensus 233 ~d~-----vG----~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 233 FDN-----VG----GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEC-----CC----HHHHHHHHHHhccCCEEEEECc
Confidence 632 11 1356788899999999997654
No 494
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=34.35 E-value=2.8e+02 Score=23.26 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=22.6
Q ss_pred ccEEEeccccccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 157 ADAIFMKWVLTTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 157 ~D~v~~~~vlh~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.|+|++.-=-+. ..++++.+...++|++.++...
T Consensus 73 ~D~vilavK~~~-----~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 73 CDWVLVGLKTTA-----NALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCEEEEEecCCC-----hHhHHHHHhhhcCCCCEEEEec
Confidence 488876432222 2467778888899998877653
No 495
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.23 E-value=1.8e+02 Score=25.78 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=43.0
Q ss_pred CCCCeEEEec-CcccHHHHHHHHHcCC-CCeEEEeec-h--HHHhhCCCCCCcEEEeCCCCCC-CCCccEEEeccccc
Q 025363 96 KGVKRLVDVG-GSAGDCLRMILQKHRF-ICEGINFDL-P--EVVAEAPSIPGVTHIGGDMFKS-IPAADAIFMKWVLT 167 (254)
Q Consensus 96 ~~~~~vlDvG-~G~G~~~~~l~~~~~~-~~~~~~~D~-~--~~~~~~~~~~~i~~~~~d~~~~-~p~~D~v~~~~vlh 167 (254)
.+.++|+=+| ||+|..+..++.+..+ .. +++.|. + ...+..+ ..+.+..+..... +++.|+|+.+-.+.
T Consensus 5 ~~~~~v~viG~G~sG~s~~~~l~~~~~~~~-v~~~D~~~~~~~~~~l~--~g~~~~~g~~~~~~~~~~d~vV~SpgI~ 79 (438)
T PRK04663 5 QGIKNVVVVGLGITGLSVVKHLRKYQPQLT-VKVIDTRETPPGQEQLP--EDVELHSGGWNLEWLLEADLVVTNPGIA 79 (438)
T ss_pred cCCceEEEEeccHHHHHHHHHHHhcCCCCe-EEEEeCCCCchhHHHhh--cCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 3335677777 5688888888887655 77 888996 2 2222222 2567655532222 44569988877764
No 496
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=34.07 E-value=81 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCCCEEEEEccc
Q 025363 175 KLIMENCYKALPAGGKLIACEPV 197 (254)
Q Consensus 175 ~~il~~~~~~L~pgG~l~i~d~~ 197 (254)
.+|-..+.++++|+|..+++|..
T Consensus 183 kQIA~a~s~~v~p~gVaVV~Ea~ 205 (247)
T KOG2698|consen 183 KQIAVALSQAVQPAGVAVVVEAT 205 (247)
T ss_pred HHHHHHHHHhcCccceEEEEecc
Confidence 35667778899999999998864
No 497
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=33.95 E-value=43 Score=28.12 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred eecCHHHHHHHHHhCCCCeeeEEE
Q 025363 227 NHRTEQEFKQLGFFAGFPHLRLYR 250 (254)
Q Consensus 227 ~~~t~~e~~~ll~~aGf~~~~~~~ 250 (254)
+.++.+++..+++++||+++++..
T Consensus 267 ~ky~~~~~~~~l~~aGf~~~~~~~ 290 (301)
T TIGR03438 267 YKFSLERFAALAAAAGLRPEQVWT 290 (301)
T ss_pred cCCCHHHHHHHHHHCCCceeEEEE
Confidence 346899999999999999988754
No 498
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=33.76 E-value=79 Score=26.63 Aligned_cols=87 Identities=15% Similarity=0.179 Sum_probs=48.0
Q ss_pred CeEEEec--CcccHHHHHHHHHcCCCCeEEEeec-hHHHhhCCC-C--CC-cEEEeCCCCCC----CCCc-cEEEecccc
Q 025363 99 KRLVDVG--GSAGDCLRMILQKHRFICEGINFDL-PEVVAEAPS-I--PG-VTHIGGDMFKS----IPAA-DAIFMKWVL 166 (254)
Q Consensus 99 ~~vlDvG--~G~G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~-~--~~-i~~~~~d~~~~----~p~~-D~v~~~~vl 166 (254)
.+||=.| +|.|..+..+++.....+ +++.+. ++-.+.+++ . .. +.....++.+. .+.+ |+++-. .
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~-Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~--~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSR-VVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDN--V 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEEC--C
Confidence 7888777 578889999998864225 766665 443333222 1 11 11111111111 1222 777632 1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEEEc
Q 025363 167 TTWTDDECKLIMENCYKALPAGGKLIACE 195 (254)
Q Consensus 167 h~~~~~~~~~il~~~~~~L~pgG~l~i~d 195 (254)
.. ..+....+.|+++|+++..-
T Consensus 233 ---g~----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 ---GG----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ---Cc----HHHHHHHHHhccCCEEEEEe
Confidence 11 12467888999999998754
No 499
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=33.64 E-value=1.3e+02 Score=26.57 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeechHHHhhCCCCCCcEEEeCCCCCCCCCccEEEeccccccCCHHHHHH
Q 025363 98 VKRLVDVGGSA-GDCLRMILQKHRFICEGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 176 (254)
Q Consensus 98 ~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~ 176 (254)
+++|.=||.|. |......++.+ +.+ ++++|..... ....+... .++.+-+..+|+|.+.--+- ++-..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-Gm~-V~~~d~~~~~----~~~~~~~~-~~l~ell~~sDiVslh~Plt----~~T~~ 219 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-GMR-VYFYDIEDKL----PLGNARQV-GSLEELLAQSDVVSLHVPET----PSTKN 219 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEECCCccc----ccCCceec-CCHHHHHhhCCEEEEcCCCC----hHHhh
Confidence 56788887664 55555555554 567 8999963110 00122211 12222245568888754432 22233
Q ss_pred HH-HHHHHhCCCCCEEE
Q 025363 177 IM-ENCYKALPAGGKLI 192 (254)
Q Consensus 177 il-~~~~~~L~pgG~l~ 192 (254)
++ ++..+.||||..|+
T Consensus 220 li~~~~l~~mk~ga~lI 236 (409)
T PRK11790 220 MIGAEELALMKPGAILI 236 (409)
T ss_pred ccCHHHHhcCCCCeEEE
Confidence 33 45666777765444
No 500
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=33.61 E-value=77 Score=28.66 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=51.7
Q ss_pred HHHHhhcCCCCCCCeEEEecCcc-cHHHHHHHHHcCCCCeEEEeec-hHHHhhCCCCCCcEEEeCCCCCCCCCccEEEec
Q 025363 86 TSVLEGYNGFKGVKRLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMK 163 (254)
Q Consensus 86 ~~i~~~~~~~~~~~~vlDvG~G~-G~~~~~l~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~d~~~~~p~~D~v~~~ 163 (254)
+.+++..+..-.+++|+=+|+|. |......++.+ +.+ ++++|. |.....+.. ..+.+. ++.+.+..+|+|+..
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~-ViV~e~dp~~a~~A~~-~G~~~~--~leell~~ADIVI~a 316 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-GAR-VVVTEIDPICALQAAM-EGYQVV--TLEDVVETADIFVTA 316 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCchhHHHHHh-cCceec--cHHHHHhcCCEEEEC
Confidence 44444443223578899998874 44444444443 457 888876 433222222 122222 222224456998874
Q ss_pred cccccCCHHHHHHHH-HHHHHhCCCCCEEEEE
Q 025363 164 WVLTTWTDDECKLIM-ENCYKALPAGGKLIAC 194 (254)
Q Consensus 164 ~vlh~~~~~~~~~il-~~~~~~L~pgG~l~i~ 194 (254)
-. ...++ ++..+.||||+.|+-.
T Consensus 317 tG--------t~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 317 TG--------NKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CC--------cccccCHHHHhccCCCcEEEEc
Confidence 21 12334 3777889999988764
Done!