Query 025364
Match_columns 254
No_of_seqs 130 out of 1552
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02851 3-hydroxyisobutyryl-C 100.0 4.4E-48 9.6E-53 351.5 26.4 248 6-253 117-364 (407)
2 KOG1684 Enoyl-CoA hydratase [L 100.0 2E-48 4.4E-53 337.7 18.6 249 3-254 111-361 (401)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 3.2E-47 6.9E-52 344.7 25.2 245 9-253 87-331 (381)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 9.4E-47 2E-51 342.8 25.4 246 8-253 114-359 (401)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 8.2E-44 1.8E-48 323.3 26.2 243 10-252 88-330 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 3.8E-42 8.2E-47 308.8 23.3 232 11-251 84-317 (342)
7 PRK09076 enoyl-CoA hydratase; 100.0 4.8E-37 1E-41 266.4 18.9 175 9-253 77-252 (258)
8 PRK05980 enoyl-CoA hydratase; 100.0 6.8E-37 1.5E-41 265.7 18.3 175 9-253 82-257 (260)
9 PLN02600 enoyl-CoA hydratase 100.0 9.5E-37 2.1E-41 263.5 18.1 176 8-253 69-245 (251)
10 PRK08150 enoyl-CoA hydratase; 100.0 9.3E-37 2E-41 264.1 18.1 174 10-253 75-249 (255)
11 PRK07657 enoyl-CoA hydratase; 100.0 1.7E-36 3.6E-41 263.3 18.1 176 8-253 78-254 (260)
12 PRK05809 3-hydroxybutyryl-CoA 100.0 1.8E-36 4E-41 263.0 18.3 175 9-253 79-254 (260)
13 PRK06143 enoyl-CoA hydratase; 100.0 1.6E-36 3.6E-41 262.7 17.7 175 8-253 81-256 (256)
14 PRK06142 enoyl-CoA hydratase; 100.0 1.7E-36 3.8E-41 264.8 17.4 175 9-253 91-267 (272)
15 PRK07658 enoyl-CoA hydratase; 100.0 2.2E-36 4.8E-41 262.1 17.6 174 10-253 77-251 (257)
16 PRK05862 enoyl-CoA hydratase; 100.0 2.3E-36 5E-41 262.0 17.5 170 14-253 81-251 (257)
17 PLN02664 enoyl-CoA hydratase/d 100.0 2.4E-36 5.2E-41 264.3 17.6 174 10-253 94-269 (275)
18 PRK06127 enoyl-CoA hydratase; 100.0 3.2E-36 6.9E-41 262.7 17.9 176 8-253 87-263 (269)
19 TIGR02280 PaaB1 phenylacetate 100.0 4.6E-36 9.9E-41 260.0 18.1 168 16-253 82-250 (256)
20 PRK08258 enoyl-CoA hydratase; 100.0 5.4E-36 1.2E-40 262.3 18.3 175 9-253 95-271 (277)
21 PRK07511 enoyl-CoA hydratase; 100.0 6E-36 1.3E-40 259.8 18.3 177 7-253 78-255 (260)
22 PRK08139 enoyl-CoA hydratase; 100.0 8.1E-36 1.7E-40 259.7 18.9 174 9-253 86-260 (266)
23 PRK09245 enoyl-CoA hydratase; 100.0 5.3E-36 1.1E-40 261.0 17.7 172 12-253 88-260 (266)
24 PRK09120 p-hydroxycinnamoyl Co 100.0 4.5E-36 9.7E-41 262.5 17.3 172 12-253 89-264 (275)
25 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.1E-36 4.6E-41 260.4 14.5 176 6-251 69-245 (245)
26 PRK07659 enoyl-CoA hydratase; 100.0 7.4E-36 1.6E-40 259.2 17.9 175 8-253 79-254 (260)
27 PRK07260 enoyl-CoA hydratase; 100.0 5.2E-36 1.1E-40 259.5 16.8 173 11-253 82-255 (255)
28 PRK09674 enoyl-CoA hydratase-i 100.0 6.9E-36 1.5E-40 258.7 17.1 170 14-253 79-249 (255)
29 PRK08138 enoyl-CoA hydratase; 100.0 1E-35 2.2E-40 258.5 17.4 173 11-253 82-255 (261)
30 PRK08140 enoyl-CoA hydratase; 100.0 1.6E-35 3.6E-40 257.3 18.1 168 16-253 88-256 (262)
31 PRK05981 enoyl-CoA hydratase; 100.0 1.4E-35 3.1E-40 258.3 17.3 174 10-253 86-260 (266)
32 PRK07799 enoyl-CoA hydratase; 100.0 1.8E-35 3.8E-40 257.3 17.4 163 21-253 94-257 (263)
33 PRK06563 enoyl-CoA hydratase; 100.0 1.4E-35 3E-40 256.8 16.4 162 22-253 87-249 (255)
34 PRK07468 enoyl-CoA hydratase; 100.0 2E-35 4.4E-40 256.7 17.5 172 11-253 84-256 (262)
35 PRK03580 carnitinyl-CoA dehydr 100.0 2.4E-35 5.1E-40 256.2 17.0 168 16-253 83-255 (261)
36 PRK06494 enoyl-CoA hydratase; 100.0 2E-35 4.4E-40 256.3 16.4 162 22-253 89-253 (259)
37 PRK06688 enoyl-CoA hydratase; 100.0 2.3E-35 4.9E-40 256.0 16.7 173 11-253 80-253 (259)
38 PRK08252 enoyl-CoA hydratase; 100.0 3.5E-35 7.7E-40 254.1 17.2 160 24-253 88-248 (254)
39 PRK05995 enoyl-CoA hydratase; 100.0 4.3E-35 9.2E-40 254.7 17.1 170 13-253 85-256 (262)
40 PLN03214 probable enoyl-CoA hy 100.0 2.7E-35 5.8E-40 257.8 14.9 173 11-253 91-265 (278)
41 PRK06210 enoyl-CoA hydratase; 100.0 4.2E-35 9E-40 256.1 16.0 167 17-253 98-266 (272)
42 PRK05870 enoyl-CoA hydratase; 100.0 5.3E-35 1.2E-39 252.3 16.5 169 11-251 79-249 (249)
43 PRK07938 enoyl-CoA hydratase; 100.0 8.4E-35 1.8E-39 251.0 17.4 170 11-253 78-248 (249)
44 TIGR01929 menB naphthoate synt 100.0 5.1E-35 1.1E-39 253.8 16.0 167 16-253 86-253 (259)
45 PRK05674 gamma-carboxygeranoyl 100.0 5.1E-35 1.1E-39 254.6 15.5 169 14-253 88-258 (265)
46 PRK06023 enoyl-CoA hydratase; 100.0 6.9E-35 1.5E-39 251.9 16.0 169 12-251 82-251 (251)
47 PRK11423 methylmalonyl-CoA dec 100.0 1.1E-34 2.3E-39 252.0 16.6 173 11-253 80-255 (261)
48 PRK07327 enoyl-CoA hydratase; 100.0 1.4E-34 3E-39 252.3 16.9 171 9-253 88-262 (268)
49 TIGR03189 dienoyl_CoA_hyt cycl 100.0 1.9E-34 4.1E-39 249.1 17.5 171 11-253 73-245 (251)
50 PRK05864 enoyl-CoA hydratase; 100.0 1.5E-34 3.3E-39 253.0 17.1 172 12-253 94-269 (276)
51 PLN02888 enoyl-CoA hydratase 100.0 1.1E-34 2.4E-39 252.4 15.9 169 17-253 89-258 (265)
52 PRK06495 enoyl-CoA hydratase; 100.0 1.8E-34 3.8E-39 250.2 17.0 172 9-253 79-251 (257)
53 KOG1680 Enoyl-CoA hydratase [L 100.0 2.9E-35 6.2E-40 248.6 11.7 168 16-253 116-284 (290)
54 PRK07854 enoyl-CoA hydratase; 100.0 1.8E-34 3.9E-39 248.2 16.7 167 11-253 70-237 (243)
55 PRK07509 enoyl-CoA hydratase; 100.0 3.4E-34 7.4E-39 249.0 18.3 166 16-253 91-257 (262)
56 PRK07827 enoyl-CoA hydratase; 100.0 3.1E-34 6.8E-39 249.0 17.7 172 10-253 84-255 (260)
57 TIGR03210 badI 2-ketocyclohexa 100.0 2.4E-34 5.3E-39 249.1 16.2 168 14-253 81-250 (256)
58 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-34 5.6E-39 251.2 16.3 166 17-253 97-263 (273)
59 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.9E-34 8.5E-39 248.0 16.9 172 10-253 81-254 (257)
60 PRK08260 enoyl-CoA hydratase; 100.0 4.7E-34 1E-38 252.2 16.9 171 12-253 98-272 (296)
61 PRK08259 enoyl-CoA hydratase; 100.0 3E-34 6.6E-39 248.2 15.0 160 23-253 89-249 (254)
62 PRK06144 enoyl-CoA hydratase; 100.0 5.3E-34 1.2E-38 247.8 16.4 170 10-253 85-256 (262)
63 PRK06072 enoyl-CoA hydratase; 100.0 9.4E-34 2E-38 244.4 17.8 170 11-253 73-242 (248)
64 PRK08321 naphthoate synthase; 100.0 1.3E-33 2.7E-38 250.0 16.0 165 18-253 126-292 (302)
65 PLN02921 naphthoate synthase 100.0 1.4E-33 3E-38 251.5 16.0 166 17-253 151-317 (327)
66 PRK07110 polyketide biosynthes 100.0 2.9E-33 6.2E-38 241.5 15.8 163 17-249 84-247 (249)
67 PRK07112 polyketide biosynthes 100.0 3.2E-33 6.9E-38 242.0 16.0 166 14-253 83-249 (255)
68 TIGR03222 benzo_boxC benzoyl-C 100.0 3.5E-32 7.6E-37 255.6 18.0 172 12-253 350-538 (546)
69 PRK06190 enoyl-CoA hydratase; 100.0 3.6E-32 7.7E-37 235.7 16.3 153 15-234 82-235 (258)
70 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.6E-32 7.8E-37 256.2 17.2 172 12-253 354-542 (550)
71 PRK12478 enoyl-CoA hydratase; 100.0 2E-32 4.2E-37 241.9 14.2 162 18-253 103-275 (298)
72 PRK11730 fadB multifunctional 100.0 2.9E-31 6.4E-36 258.4 17.1 213 8-253 83-298 (715)
73 KOG1679 Enoyl-CoA hydratase [L 100.0 6.5E-32 1.4E-36 220.1 8.9 183 5-253 102-285 (291)
74 PRK11154 fadJ multifunctional 100.0 1.5E-30 3.3E-35 253.3 17.3 207 9-252 83-294 (708)
75 PRK05869 enoyl-CoA hydratase; 100.0 1.9E-30 4E-35 220.3 15.1 138 11-215 83-221 (222)
76 PRK08788 enoyl-CoA hydratase; 100.0 6.9E-30 1.5E-34 223.9 17.9 166 14-249 105-274 (287)
77 PRK06213 enoyl-CoA hydratase; 100.0 2.2E-30 4.7E-35 221.0 13.9 154 8-228 72-227 (229)
78 TIGR03200 dearomat_oah 6-oxocy 100.0 2.6E-29 5.7E-34 223.3 20.4 209 7-251 104-328 (360)
79 TIGR02440 FadJ fatty oxidation 100.0 9.7E-30 2.1E-34 247.3 18.8 206 8-252 77-289 (699)
80 PRK08290 enoyl-CoA hydratase; 100.0 2.5E-29 5.3E-34 221.2 15.6 151 14-233 105-257 (288)
81 TIGR02437 FadB fatty oxidation 100.0 1.8E-28 3.8E-33 238.7 17.5 214 8-253 83-298 (714)
82 KOG1681 Enoyl-CoA isomerase [L 100.0 1.7E-29 3.7E-34 207.6 5.2 177 8-253 107-285 (292)
83 PRK08272 enoyl-CoA hydratase; 100.0 4.2E-28 9.1E-33 214.9 14.4 134 12-215 112-246 (302)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.5E-27 3.2E-32 232.8 15.7 224 7-252 88-321 (737)
85 KOG0016 Enoyl-CoA hydratase/is 100.0 1.1E-27 2.3E-32 200.9 12.6 173 11-253 91-264 (266)
86 PLN02267 enoyl-CoA hydratase/i 99.9 1.4E-26 3E-31 198.7 15.5 109 10-118 77-189 (239)
87 cd06558 crotonase-like Crotona 99.9 1.8E-24 4E-29 179.5 11.9 114 9-122 75-189 (195)
88 KOG1682 Enoyl-CoA isomerase [L 99.9 5.9E-24 1.3E-28 172.4 11.6 175 7-252 105-280 (287)
89 TIGR03222 benzo_boxC benzoyl-C 99.9 4.6E-23 1E-27 194.1 13.0 107 18-124 110-222 (546)
90 COG0447 MenB Dihydroxynaphthoi 99.9 1E-23 2.2E-28 172.5 5.6 166 17-253 106-272 (282)
91 PRK08184 benzoyl-CoA-dihydrodi 99.9 8E-23 1.7E-27 193.0 12.1 104 19-122 115-224 (550)
92 cd07020 Clp_protease_NfeD_1 No 99.7 8.4E-17 1.8E-21 133.2 8.9 99 17-115 48-166 (187)
93 PF13766 ECH_C: 2-enoyl-CoA Hy 99.7 2.6E-16 5.7E-21 120.5 8.9 93 154-253 3-95 (118)
94 cd07014 S49_SppA Signal peptid 99.6 7.1E-15 1.5E-19 120.6 6.7 104 15-118 59-173 (177)
95 cd07016 S14_ClpP_1 Caseinolyti 99.4 6.4E-13 1.4E-17 107.2 9.5 97 15-111 46-160 (160)
96 cd00394 Clp_protease_like Case 99.1 1.7E-10 3.7E-15 92.9 8.4 96 16-111 46-161 (161)
97 cd07021 Clp_protease_NfeD_like 99.0 2.3E-09 4.9E-14 87.9 7.7 97 13-113 44-170 (178)
98 cd07019 S49_SppA_1 Signal pept 99.0 6.9E-10 1.5E-14 93.6 4.7 47 15-61 58-104 (211)
99 TIGR00705 SppA_67K signal pept 98.9 3.8E-09 8.2E-14 101.4 8.1 109 14-125 365-519 (584)
100 cd07022 S49_Sppa_36K_type Sign 98.8 1.5E-08 3.2E-13 85.7 7.9 45 19-63 63-109 (214)
101 TIGR00706 SppA_dom signal pept 98.7 3.9E-08 8.4E-13 82.6 7.9 104 15-118 47-199 (207)
102 cd07023 S49_Sppa_N_C Signal pe 98.7 6.8E-08 1.5E-12 81.2 7.7 101 15-115 54-201 (208)
103 cd07015 Clp_protease_NfeD Nodu 98.4 2.8E-06 6E-11 69.2 9.6 99 16-114 47-165 (172)
104 PRK00277 clpP ATP-dependent Cl 98.3 1.9E-06 4.2E-11 72.0 8.1 99 16-114 78-196 (200)
105 cd07018 S49_SppA_67K_type Sign 98.3 3.1E-06 6.7E-11 71.9 7.9 51 13-64 64-114 (222)
106 PRK12319 acetyl-CoA carboxylas 98.2 5.7E-06 1.2E-10 71.5 9.0 93 12-115 121-215 (256)
107 CHL00198 accA acetyl-CoA carbo 98.2 8.2E-06 1.8E-10 72.3 10.0 94 12-114 177-270 (322)
108 cd07013 S14_ClpP Caseinolytic 98.2 7.7E-06 1.7E-10 66.1 9.1 97 15-111 46-162 (162)
109 PRK12553 ATP-dependent Clp pro 98.2 9.9E-06 2.1E-10 68.1 8.6 98 15-114 81-202 (207)
110 PLN03229 acetyl-coenzyme A car 98.1 1.6E-05 3.5E-10 76.6 10.0 96 10-114 263-358 (762)
111 PRK14512 ATP-dependent Clp pro 98.1 2E-05 4.3E-10 65.7 9.1 100 15-114 69-188 (197)
112 TIGR00513 accA acetyl-CoA carb 98.1 2.3E-05 5E-10 69.4 9.6 93 11-114 173-267 (316)
113 PLN03230 acetyl-coenzyme A car 98.0 3.1E-05 6.8E-10 70.5 9.9 93 11-114 243-337 (431)
114 PRK05724 acetyl-CoA carboxylas 98.0 2.6E-05 5.7E-10 69.2 9.1 94 12-114 174-267 (319)
115 cd07017 S14_ClpP_2 Caseinolyti 98.0 1.5E-05 3.2E-10 65.0 6.5 95 17-111 57-171 (171)
116 PF00574 CLP_protease: Clp pro 98.0 1.5E-05 3.3E-10 65.4 6.1 100 15-114 62-181 (182)
117 CHL00028 clpP ATP-dependent Cl 98.0 5.5E-05 1.2E-09 63.2 9.2 100 15-115 76-197 (200)
118 PRK14514 ATP-dependent Clp pro 97.9 8E-05 1.7E-09 63.0 9.4 99 16-114 101-219 (221)
119 TIGR00493 clpP ATP-dependent C 97.9 8.9E-05 1.9E-09 61.5 8.8 99 15-113 72-190 (191)
120 PRK14513 ATP-dependent Clp pro 97.8 0.00021 4.5E-09 59.7 9.6 100 15-116 73-194 (201)
121 PRK12551 ATP-dependent Clp pro 97.6 0.00028 6E-09 58.8 8.4 101 15-115 71-191 (196)
122 TIGR03134 malonate_gamma malon 97.6 0.00094 2E-08 57.2 11.7 103 7-117 84-192 (238)
123 TIGR03133 malonate_beta malona 97.6 0.00023 5E-09 62.1 8.0 95 18-124 125-226 (274)
124 PRK07189 malonate decarboxylas 97.5 0.0011 2.4E-08 58.5 10.3 35 28-62 146-182 (301)
125 COG0740 ClpP Protease subunit 97.4 0.0011 2.5E-08 54.9 8.6 102 14-116 72-194 (200)
126 PRK12552 ATP-dependent Clp pro 97.3 0.0013 2.8E-08 55.7 8.1 98 15-114 95-214 (222)
127 PRK11778 putative inner membra 97.1 0.002 4.4E-08 57.7 8.0 97 20-117 147-289 (330)
128 COG0825 AccA Acetyl-CoA carbox 97.1 0.00086 1.9E-08 58.2 4.9 92 14-114 175-266 (317)
129 PRK10949 protease 4; Provision 97.0 0.003 6.5E-08 61.3 9.1 99 15-113 384-528 (618)
130 PRK05654 acetyl-CoA carboxylas 97.0 0.0047 1E-07 54.6 9.0 90 19-124 186-276 (292)
131 PF01972 SDH_sah: Serine dehyd 96.8 0.0047 1E-07 53.6 7.2 60 14-73 105-164 (285)
132 KOG1683 Hydroxyacyl-CoA dehydr 96.7 0.0004 8.7E-09 62.2 0.2 110 4-114 125-240 (380)
133 CHL00174 accD acetyl-CoA carbo 96.6 0.017 3.7E-07 50.9 9.7 79 25-124 205-289 (296)
134 COG0616 SppA Periplasmic serin 96.6 0.0063 1.4E-07 54.5 7.2 45 16-61 118-162 (317)
135 TIGR00515 accD acetyl-CoA carb 96.6 0.0093 2E-07 52.5 7.7 90 19-124 185-275 (285)
136 TIGR01117 mmdA methylmalonyl-C 96.3 0.026 5.7E-07 53.8 9.3 101 11-119 372-486 (512)
137 COG1030 NfeD Membrane-bound se 95.3 0.07 1.5E-06 49.3 7.7 111 12-124 70-196 (436)
138 PF01343 Peptidase_S49: Peptid 95.2 0.029 6.2E-07 44.8 4.4 39 24-62 3-41 (154)
139 TIGR01117 mmdA methylmalonyl-C 95.2 0.056 1.2E-06 51.6 6.9 69 26-115 153-229 (512)
140 PLN02820 3-methylcrotonyl-CoA 95.2 0.14 3.1E-06 49.3 9.6 75 21-116 199-281 (569)
141 PLN02820 3-methylcrotonyl-CoA 95.0 0.13 2.7E-06 49.7 8.8 109 7-118 419-544 (569)
142 PF01039 Carboxyl_trans: Carbo 95.0 0.077 1.7E-06 50.4 7.2 78 17-116 122-207 (493)
143 COG0777 AccD Acetyl-CoA carbox 94.6 0.13 2.8E-06 44.6 7.0 86 19-122 187-275 (294)
144 TIGR00705 SppA_67K signal pept 93.3 0.34 7.3E-06 47.1 7.9 49 13-62 112-160 (584)
145 PF01039 Carboxyl_trans: Carbo 92.1 0.21 4.5E-06 47.5 4.7 108 8-121 348-471 (493)
146 KOG0840 ATP-dependent Clp prot 92.0 0.76 1.6E-05 39.6 7.4 92 18-114 141-257 (275)
147 COG4799 Acetyl-CoA carboxylase 91.5 0.18 3.9E-06 47.8 3.4 39 19-58 156-194 (526)
148 PLN02157 3-hydroxyisobutyryl-C 91.5 0.46 1E-05 43.9 6.0 59 190-252 228-289 (401)
149 PF06833 MdcE: Malonate decarb 74.6 22 0.00047 30.4 8.1 90 19-116 97-189 (234)
150 COG4799 Acetyl-CoA carboxylase 73.1 3.9 8.5E-05 39.0 3.6 74 4-80 374-447 (526)
151 smart00250 PLEC Plectin repeat 65.5 4.9 0.00011 23.8 1.7 19 92-110 17-35 (38)
152 PRK10949 protease 4; Provision 63.4 15 0.00033 36.1 5.5 50 13-63 131-180 (618)
153 PF00681 Plectin: Plectin repe 61.2 3 6.6E-05 25.8 0.2 19 92-110 17-35 (45)
154 PF01343 Peptidase_S49: Peptid 61.0 2.5 5.5E-05 33.5 -0.2 28 91-118 117-144 (154)
155 KOG0333 U5 snRNP-like RNA heli 44.7 26 0.00056 33.7 3.6 31 28-58 351-382 (673)
156 KOG0540 3-Methylcrotonyl-CoA c 44.4 31 0.00066 32.4 3.9 103 4-118 399-511 (536)
157 PF09905 DUF2132: Uncharacteri 42.4 37 0.00081 22.8 3.1 29 161-195 33-62 (64)
158 PF13877 RPAP3_C: Potential Mo 37.1 71 0.0015 22.7 4.3 53 154-206 34-86 (94)
159 COG4565 CitB Response regulato 35.9 1.6E+02 0.0036 24.9 6.7 55 70-124 56-114 (224)
160 PF14842 FliG_N: FliG N-termin 32.1 60 0.0013 24.0 3.2 86 87-179 12-101 (108)
161 PTZ00293 thymidine kinase; Pro 31.8 1.1E+02 0.0023 25.8 5.0 44 10-53 86-134 (211)
162 COG0412 Dienelactone hydrolase 29.3 1E+02 0.0022 26.2 4.6 42 11-52 91-134 (236)
163 KOG4391 Predicted alpha/beta h 28.4 11 0.00023 32.2 -1.5 82 33-118 152-241 (300)
164 COG4567 Response regulator con 25.4 2.1E+02 0.0045 23.1 5.3 81 87-177 82-166 (182)
165 PF02601 Exonuc_VII_L: Exonucl 24.6 63 0.0014 28.6 2.6 42 15-58 95-136 (319)
166 PLN03037 lipase class 3 family 24.4 72 0.0016 30.7 3.0 26 28-53 316-341 (525)
167 KOG4569 Predicted lipase [Lipi 22.8 92 0.002 28.0 3.3 46 22-68 164-214 (336)
168 PF01764 Lipase_3: Lipase (cla 22.2 98 0.0021 23.1 3.0 32 20-52 55-86 (140)
169 PF14505 DUF4438: Domain of un 20.7 24 0.00053 30.2 -0.8 44 26-69 145-194 (258)
170 PRK05255 hypothetical protein; 20.4 3.4E+02 0.0073 22.1 5.8 56 157-212 110-168 (171)
No 1
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4.4e-48 Score=351.45 Aligned_cols=248 Identities=67% Similarity=1.137 Sum_probs=222.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH
Q 025364 6 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 85 (254)
Q Consensus 6 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 85 (254)
.+...+|+..+|++++.|.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 117 ~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~ 196 (407)
T PLN02851 117 VEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY 196 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 86 LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 86 ~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
.+.||+|||++++++||+++||+|+++++++++.+.+.+.++.+.++..+...+++|.....+...........|++||+
T Consensus 197 ~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~ 276 (407)
T PLN02851 197 LGEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFG 276 (407)
T ss_pred HHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999888888887777778888888888864422222344555789999999
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS 245 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~ 245 (254)
.+++++|++.|+...++..++|++++++.|.+.||.|+++|++++++++.++++++++.|+++..+++....++||.|||
T Consensus 277 ~~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGV 356 (407)
T PLN02851 277 HDTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGV 356 (407)
T ss_pred CCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 99999999999975333357999999999999999999999999999999999999999999999887211279999999
Q ss_pred hheeccCC
Q 025364 246 NFQILNKH 253 (254)
Q Consensus 246 ~afl~~k~ 253 (254)
+|.|+||+
T Consensus 357 RA~LIDKd 364 (407)
T PLN02851 357 RARLVDKD 364 (407)
T ss_pred HHHhcCCC
Confidence 99999997
No 2
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=337.70 Aligned_cols=249 Identities=50% Similarity=0.802 Sum_probs=232.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhcc
Q 025364 3 QGKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 82 (254)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 82 (254)
+++.+....||..+|.+.+.|.++.||+||.+||.+||||++|+.+.-||||||++.|+|||+.||++||+|++++++|+
T Consensus 111 d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrl 190 (401)
T KOG1684|consen 111 DKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRL 190 (401)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHh-hccCCChHHHHHHHHHhccccCCCcchhHhHHHHHH
Q 025364 83 PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVD 161 (254)
Q Consensus 83 ~g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (254)
+|..+.||+|||.++++.||+.+||++|+|+++.+..+++++. .+..++.+.++..+++|.....++........+.|+
T Consensus 191 pg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~ 270 (401)
T KOG1684|consen 191 PGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVIN 270 (401)
T ss_pred ccHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHH
Confidence 9988999999999999999999999999999999999999997 444555589999999999988777777888899999
Q ss_pred HhcCCCCHHHHHHHHHhcc-ccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCC
Q 025364 162 KCFGLDTVEEIIDSLESEA-SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 240 (254)
Q Consensus 162 ~~~~~~~~~~i~~~l~~~~-~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d 240 (254)
.||+.+++++|++.|++.. .....+||.++++.|...||.|+.+|.++++++..+++++++..|+++...... +.|
T Consensus 271 ~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~---~~D 347 (401)
T KOG1684|consen 271 KCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLM---RGD 347 (401)
T ss_pred HhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---ccc
Confidence 9999999999999886653 445679999999999999999999999999999999999999999999998886 999
Q ss_pred hhhhhhheeccCCC
Q 025364 241 FYEVSNFQILNKHV 254 (254)
Q Consensus 241 ~~eg~~afl~~k~~ 254 (254)
|.||++|.|+||+.
T Consensus 348 F~EGvRA~LIDKd~ 361 (401)
T KOG1684|consen 348 FCEGVRAVLIDKDQ 361 (401)
T ss_pred hhhhhhheeecCCc
Confidence 99999999999973
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=3.2e-47 Score=344.69 Aligned_cols=245 Identities=48% Similarity=0.826 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHH
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGE 88 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~ 88 (254)
...|+...+.+.+.|.++||||||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+.
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~ 166 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGE 166 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHH
Confidence 34677777888889999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 168 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (254)
||+|||+++++.||+++||+|+++++++++.....+.++...+|..++..++.+.............+...|++||+.++
T Consensus 167 ~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~ 246 (381)
T PLN02988 167 YVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRT 246 (381)
T ss_pred HHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999988888887777788888888888875432122344456889999999999
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 169 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 169 ~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
+++|++.|+....+..++|++++++.|.+.||.|+++|++++++++..++.++++.|+++..++.....++||.|||+|.
T Consensus 247 ~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~ 326 (381)
T PLN02988 247 VEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAI 326 (381)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 99999999974322357999999999999999999999999999999999999999999999998511149999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
|+||+
T Consensus 327 LiDKd 331 (381)
T PLN02988 327 LVDKD 331 (381)
T ss_pred hcCCC
Confidence 99996
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.4e-47 Score=342.82 Aligned_cols=246 Identities=69% Similarity=1.131 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHH
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLG 87 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a 87 (254)
....|+...+++++.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a 193 (401)
T PLN02157 114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLG 193 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHH
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999779
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.||++||++++++||+++||||+++++++++...+.+.++...+|..++..|+.+.....+...........++.||+.+
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~ 273 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHD 273 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999987777777888888999999999887653222233444578899999999
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
++++|++.|+....+..++|++++++.|.+.||.|+++|++++++++..+++++++.|+++..+++....++||.|||+|
T Consensus 274 d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 353 (401)
T PLN02157 274 TVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRA 353 (401)
T ss_pred CHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 99999999976433335799999999999999999999999999999999999999999999998741115999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
.|+||+
T Consensus 354 ~LiDKd 359 (401)
T PLN02157 354 RLIDKD 359 (401)
T ss_pred HHcCCC
Confidence 999997
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.2e-44 Score=323.33 Aligned_cols=243 Identities=47% Similarity=0.794 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 89 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 89 (254)
..++...+.+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|..+.+
T Consensus 88 ~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~~ 167 (379)
T PLN02874 88 LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEY 167 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHHH
Confidence 34555566778889999999999999999999999999999999999999999999999999999999999999977999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++|||+++++++++..+.+.+.+....+...++.++..|.................+.+||+.+++
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 247 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTV 247 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999988888766676666666777888888887754334445555668999999999999
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+|++.+++..++..++||.+++++|+++||.|++.+|++++++...+++++++.|.++....+....++|++||+++|+
T Consensus 248 ~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Afl 327 (379)
T PLN02874 248 EEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRALV 327 (379)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceEE
Confidence 99999999877766789999999999999999999999999999888999999999888766542112799999999998
Q ss_pred ccC
Q 025364 250 LNK 252 (254)
Q Consensus 250 ~~k 252 (254)
++|
T Consensus 328 idK 330 (379)
T PLN02874 328 IDK 330 (379)
T ss_pred EcC
Confidence 544
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=3.8e-42 Score=308.84 Aligned_cols=232 Identities=38% Similarity=0.642 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 90 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l 90 (254)
.++...++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++|
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~l 163 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYL 163 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHHH
Confidence 45666677888999999999999999999999999999999999999999999999999999999999999988559999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhcc-CCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLV-TDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
++||+.++++||+++|||+++++++++...++.+.++. .++.+.++.++++|..... ........+.|++||+..++
T Consensus 164 lltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 241 (342)
T PRK05617 164 ALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAP--ASELAAQRAWIDECFAGDTV 241 (342)
T ss_pred HHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCC--cchhHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999888876655554433 4566778888888777633 34777889999999999999
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
++|+++|++. .++||.+++++|+++||.+++.+|++++++...+++++++.|.+.+...+. ++|+.||+++|+
T Consensus 242 ~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~egv~afl 314 (342)
T PRK05617 242 EDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLR---SPDFVEGVRAVL 314 (342)
T ss_pred HHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---CCchhhccceEE
Confidence 9999999987 458999999999999999999999999999888999999999999999997 999999999998
Q ss_pred -cc
Q 025364 250 -LN 251 (254)
Q Consensus 250 -~~ 251 (254)
++
T Consensus 315 ~ek 317 (342)
T PRK05617 315 IDK 317 (342)
T ss_pred EcC
Confidence 44
No 7
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-37 Score=266.37 Aligned_cols=175 Identities=20% Similarity=0.243 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 344555667788899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
+++++||++++++||+++||||++++++++.+..
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 190 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAA---------------------------------------------- 190 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHH----------------------------------------------
Confidence 9999999999999999999999999987765322
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
.+++++|+..||.+++.+|++++.....++++.++.|...+..++. ++|++||+++
T Consensus 191 ---------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~a 246 (258)
T PRK09076 191 ---------------------LALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFD---TEDQREGVNA 246 (258)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 2568999999999999999999988888999999999999999987 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 247 f~~kr~ 252 (258)
T PRK09076 247 FLEKRA 252 (258)
T ss_pred HhcCCC
Confidence 999985
No 8
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-37 Score=265.74 Aligned_cols=175 Identities=25% Similarity=0.332 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...++..+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 456666677788899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
+++++||++++++||+++||||++++++++....
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 195 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAA---------------------------------------------- 195 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887766422
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
.+++++|++.+|.+++.+|++++.....+++++++.|...+...+. ++|++||+.+
T Consensus 196 ---------------------~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~a 251 (260)
T PRK05980 196 ---------------------RALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG---SADLREGLAA 251 (260)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence 2568899999999999999999998888999999999999999997 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 252 f~~kr~ 257 (260)
T PRK05980 252 WIERRR 257 (260)
T ss_pred HhccCC
Confidence 999985
No 9
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=9.5e-37 Score=263.50 Aligned_cols=176 Identities=23% Similarity=0.300 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....+...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 148 (251)
T PLN02600 69 EVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSR 148 (251)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHH
Confidence 3445666677888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+++|++||++++++||+++||||++++++++....
T Consensus 149 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a--------------------------------------------- 183 (251)
T PLN02600 149 AKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKA--------------------------------------------- 183 (251)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHH---------------------------------------------
Confidence 99999999999999999999999999987765322
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
.+++++|+..||.+++.+|++++.....++++.++.|.+.+..++. ++|++||++
T Consensus 184 ----------------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~ 238 (251)
T PLN02600 184 ----------------------LELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLK---TKDRLEGLA 238 (251)
T ss_pred ----------------------HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 2568999999999999999999988888999999999999999998 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|.
T Consensus 239 af~ekr~ 245 (251)
T PLN02600 239 AFAEKRK 245 (251)
T ss_pred HHhcCCC
Confidence 9999985
No 10
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-37 Score=264.09 Aligned_cols=174 Identities=22% Similarity=0.177 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 88 (254)
..+...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 75 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 154 (255)
T PRK08150 75 MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMT 154 (255)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 34456667788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 168 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (254)
+|++||++++++||+++||||++++++++.+...
T Consensus 155 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 188 (255)
T PRK08150 155 DMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAM---------------------------------------------- 188 (255)
T ss_pred HHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877664332
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 169 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 169 ~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
+++++|+..||.+++.+|++++.....++++.++.|...+...+. ++|++||+.+|
T Consensus 189 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af 244 (255)
T PRK08150 189 ---------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQS---APEAKERLRAF 244 (255)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 568999999999999999999988888999999999988888887 99999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
+++|.
T Consensus 245 ~~kr~ 249 (255)
T PRK08150 245 LEKKA 249 (255)
T ss_pred hccCC
Confidence 99874
No 11
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-36 Score=263.27 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....++..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 78 QVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 3456666778888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+.++++||++++++||+++||||++++++++.....
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 193 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI-------------------------------------------- 193 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999998877664332
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
+++++|+..+|.+++.+|++++.....++++.++.|...+...+. ++|++||++
T Consensus 194 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~ 247 (260)
T PRK07657 194 -----------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIP---TKDRLEGLQ 247 (260)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CHhHHHHHH
Confidence 468999999999999999999998888999999999999999987 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|+
T Consensus 248 af~~~r~ 254 (260)
T PRK07657 248 AFKEKRK 254 (260)
T ss_pred HHhcCCC
Confidence 9999874
No 12
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.8e-36 Score=263.02 Aligned_cols=175 Identities=23% Similarity=0.286 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...+.....+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 344555566788899999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.+|++||++++++||+++||||++++++++...
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~----------------------------------------------- 191 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEE----------------------------------------------- 191 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH-----------------------------------------------
Confidence 999999999999999999999999987766532
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
+.+++++|+..||.+++.+|+.+++....+++++++.|.+.+..++. ++|++||+++
T Consensus 192 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~a 248 (260)
T PRK05809 192 --------------------AKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS---TEDQTEGMTA 248 (260)
T ss_pred --------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 23568999999999999999999998888999999999999999998 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|.
T Consensus 249 f~~~r~ 254 (260)
T PRK05809 249 FVEKRE 254 (260)
T ss_pred HhcCCC
Confidence 999874
No 13
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-36 Score=262.68 Aligned_cols=175 Identities=21% Similarity=0.266 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 34456677778889999999999999999999999999999999999999999999999998 8888899999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+.++++||++++++||+++||||++++++++.....
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE-------------------------------------------- 195 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999877664332
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
+++++|+..||.+++.+|++++.....++++.++.|...+...+. ++|++||++
T Consensus 196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~e~~~ 249 (256)
T PRK06143 196 -----------------------RLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFL---TGEPQRHMA 249 (256)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhc---ChHHHHHHH
Confidence 568999999999999999999998888999999999999998887 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|+
T Consensus 250 af~ekr~ 256 (256)
T PRK06143 250 AFLNRKR 256 (256)
T ss_pred HHHhhcC
Confidence 9999974
No 14
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-36 Score=264.80 Aligned_cols=175 Identities=22% Similarity=0.233 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...+...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +
T Consensus 91 ~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 170 (272)
T PRK06142 91 LRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHL 170 (272)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHH
Confidence 334455667788899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhccc-CChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
++|++||++++++||+++||||+++++ +++.....
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~-------------------------------------------- 206 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH-------------------------------------------- 206 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999985 55553222
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
+++++|++.||.+++.+|++++.....++++.++.|.......+. ++|++||+.
T Consensus 207 -----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~egv~ 260 (272)
T PRK06142 207 -----------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLP---SKDLTEAIA 260 (272)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHH
Confidence 468999999999999999999988888999999999999999887 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|+
T Consensus 261 af~~kr~ 267 (272)
T PRK06142 261 AHMEKRP 267 (272)
T ss_pred HHhcCCC
Confidence 9999985
No 15
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-36 Score=262.12 Aligned_cols=174 Identities=19% Similarity=0.229 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 88 (254)
..+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK07658 77 TELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence 34555667788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 168 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (254)
+|++||++++++||+++||||++++++++.+..
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------- 189 (257)
T PRK07658 157 EMMLTSEPITGAEALKWGLVNGVFPEETLLDDA----------------------------------------------- 189 (257)
T ss_pred HHHHcCCCcCHHHHHHcCCcCeecChhHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877766322
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 169 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 169 ~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
.+++++|++.||.+++.+|++++.....++++.++.|...+..++. ++|++||+.+|
T Consensus 190 --------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~egi~af 246 (257)
T PRK07658 190 --------------------KKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFT---SEDAKEGVQAF 246 (257)
T ss_pred --------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 2568999999999999999999988888999999999999999987 99999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
+++|+
T Consensus 247 ~~kr~ 251 (257)
T PRK07658 247 LEKRK 251 (257)
T ss_pred HcCCC
Confidence 99875
No 16
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-36 Score=261.96 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
..+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. +.+|++
T Consensus 81 ~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK05862 81 GDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCL 160 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHH
Confidence 4445577889999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||++++++||+++||||++++++++.+...
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 190 (257)
T PRK05862 161 TGRMMDAAEAERAGLVSRVVPADKLLDEAL-------------------------------------------------- 190 (257)
T ss_pred hCCccCHHHHHHcCCCCEeeCHhHHHHHHH--------------------------------------------------
Confidence 999999999999999999999877664332
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccC
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 252 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k 252 (254)
+++++|++.+|.+++.+|++++.....+++++++.|.+.+...+. ++|++||+++|+++|
T Consensus 191 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~~~~e~i~af~~kr 250 (257)
T PRK05862 191 -----------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFA---TEDQKEGMAAFVEKR 250 (257)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHhccC
Confidence 468899999999999999999998888999999999999999987 999999999999988
Q ss_pred C
Q 025364 253 H 253 (254)
Q Consensus 253 ~ 253 (254)
+
T Consensus 251 ~ 251 (257)
T PRK05862 251 K 251 (257)
T ss_pred C
Confidence 5
No 17
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.4e-36 Score=264.28 Aligned_cols=174 Identities=22% Similarity=0.239 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 88 (254)
..++..+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. ++
T Consensus 94 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~ 173 (275)
T PLN02664 94 RRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM 173 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence 34455566788899999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhccc-CChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
++++||++++++||+++||||+++++ +++.....
T Consensus 174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~--------------------------------------------- 208 (275)
T PLN02664 174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR--------------------------------------------- 208 (275)
T ss_pred HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH---------------------------------------------
Confidence 99999999999999999999999985 55553222
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
+++++|+..||.+++.+|++++.....+++++++.|...+...+. ++|++||+++
T Consensus 209 ----------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~a 263 (275)
T PLN02664 209 ----------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLV---SDDLNEAVSA 263 (275)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---ChhHHHHHHH
Confidence 468999999999999999999988888999999999998888887 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 264 f~ekr~ 269 (275)
T PLN02664 264 QIQKRK 269 (275)
T ss_pred HhccCC
Confidence 999985
No 18
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-36 Score=262.71 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....+....+.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 3455666677788999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+.++++||++++++||+++||||++++++++.....
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 202 (269)
T PRK06127 167 AKDLFYTARRFDAAEALRIGLVHRVTAADDLETALA-------------------------------------------- 202 (269)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999998877664333
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
+++++++..||.+++.+|++++.....++++.++.|...+...+. ++|++||+.
T Consensus 203 -----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~ 256 (269)
T PRK06127 203 -----------------------DYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFD---SEDYREGRA 256 (269)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---ChHHHHHHH
Confidence 468999999999999999999998888999999999999999987 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|.
T Consensus 257 af~ekr~ 263 (269)
T PRK06127 257 AFMEKRK 263 (269)
T ss_pred HHhcCCC
Confidence 9999974
No 19
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=4.6e-36 Score=259.98 Aligned_cols=168 Identities=22% Similarity=0.255 Sum_probs=156.0
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
...++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|++||
T Consensus 82 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g 161 (256)
T TIGR02280 82 YNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLG 161 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||+++||||++++++++.+...
T Consensus 162 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 189 (256)
T TIGR02280 162 EKLDARTAASWGLIWQVVDDAALMDEAQ---------------------------------------------------- 189 (256)
T ss_pred CCCCHHHHHHcCCcceeeChHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999877664222
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+..||.+++.+|+.++......++++++.|...+..++. ++|++||+.+|+++|+
T Consensus 190 ---------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~kr~ 250 (256)
T TIGR02280 190 ---------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGR---SADYAEGVTAFLDKRN 250 (256)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHcCCC
Confidence 568999999999999999999998888999999999999999887 9999999999999875
No 20
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-36 Score=262.29 Aligned_cols=175 Identities=18% Similarity=0.208 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCC-CccHHHHHhccChHH-
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL- 86 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~g~~- 86 (254)
...+...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|+++++++++|..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~ 174 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR 174 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence 445556667788999999999999999999999999999999999999999999999999995 788999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+++|++||++++++||+++||||++++++++.....
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 210 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-------------------------------------------- 210 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999998776654222
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
+++++|+..||.+++.+|++++.....++++.++.|...+..++. ++|++||++
T Consensus 211 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~eg~~ 264 (277)
T PRK08258 211 -----------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQ---TEDFRRAYE 264 (277)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence 568999999999999999999998888999999999999999998 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|.
T Consensus 265 af~ekr~ 271 (277)
T PRK08258 265 AFVAKRK 271 (277)
T ss_pred HHhcCCC
Confidence 9999985
No 21
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-36 Score=259.78 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH
Q 025364 7 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 86 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 86 (254)
+...+++..+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 78 SVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 34456777788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
+.+|++||++++++||+++||||++++++++.+...
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------- 194 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEAL------------------------------------------- 194 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHH-------------------------------------------
Confidence 999999999999999999999999998776553222
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS 245 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~ 245 (254)
++++++++.+|.+++.+|+.++.....++++.++.|...+...+. ++|+++|+
T Consensus 195 ------------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i 247 (260)
T PRK07511 195 ------------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH---HADALEGI 247 (260)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CchHHHHH
Confidence 468889999999999999999998888999999999999999987 99999999
Q ss_pred hheeccCC
Q 025364 246 NFQILNKH 253 (254)
Q Consensus 246 ~afl~~k~ 253 (254)
++|+++|+
T Consensus 248 ~~f~~~r~ 255 (260)
T PRK07511 248 AAFLEKRA 255 (260)
T ss_pred HHHhccCC
Confidence 99999885
No 22
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.1e-36 Score=259.73 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...+++.+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++++|++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 345566677888999999999999999999999999999999999999999999999999999875 56799999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.+|++||++++++||+++||||++++++++.+...
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------- 199 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA--------------------------------------------- 199 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877764333
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
+++++|+..||.+++.+|++++.....+++++++.|...+...+. ++|++||+++
T Consensus 200 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~a 254 (266)
T PRK08139 200 ----------------------RLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMM---AEDAEEGIDA 254 (266)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhc---CchHHHHHHH
Confidence 468999999999999999999998888999999999999988887 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 255 f~~kr~ 260 (266)
T PRK08139 255 FLEKRP 260 (266)
T ss_pred HhcCCC
Confidence 999875
No 23
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-36 Score=260.97 Aligned_cols=172 Identities=19% Similarity=0.304 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 90 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 90 (254)
+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|
T Consensus 88 ~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l 167 (266)
T PRK09245 88 YRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEM 167 (266)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHH
Confidence 334456778899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++||||++++++++.....
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 199 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPADQLLPAAR------------------------------------------------ 199 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999998877664332
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 250 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~ 250 (254)
+++++|++.||.+++.+|++++.....++++.+..|......++. ++|++||+.+|++
T Consensus 200 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~ 257 (266)
T PRK09245 200 -------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHH---TADHREAVDAFLE 257 (266)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHHHHHc
Confidence 468999999999999999999988888999999999999888887 9999999999999
Q ss_pred cCC
Q 025364 251 NKH 253 (254)
Q Consensus 251 ~k~ 253 (254)
+|+
T Consensus 258 kr~ 260 (266)
T PRK09245 258 KRP 260 (266)
T ss_pred CCC
Confidence 885
No 24
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=4.5e-36 Score=262.47 Aligned_cols=172 Identities=21% Similarity=0.263 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 90 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 90 (254)
+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 168 (275)
T PRK09120 89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYY 168 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHH
Confidence 334556778899999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++|||++++++++++....
T Consensus 169 lltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 200 (275)
T PRK09120 169 IMTGETFTGRKAAEMGLVNESVPLAQLRARTR------------------------------------------------ 200 (275)
T ss_pred HhcCCccCHHHHHHcCCcceecCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887774333
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHH--HHHhhhcCCCC-Chhhhhhh
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM--SLQGVSRLISG-DFYEVSNF 247 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~--~~~~~~~~~~~-d~~eg~~a 247 (254)
+++++|+..||.+++.+|++++.....++++.++.|... ....+. ++ |++||+++
T Consensus 201 -------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~d~~eg~~a 258 (275)
T PRK09120 201 -------------------ELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLD---PEGGREEGLKQ 258 (275)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHH
Confidence 568999999999999999999998888999999988654 334455 77 89999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|.
T Consensus 259 fl~kr~ 264 (275)
T PRK09120 259 FLDDKS 264 (275)
T ss_pred HHhccc
Confidence 999985
No 25
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.1e-36 Score=260.40 Aligned_cols=176 Identities=27% Similarity=0.413 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH
Q 025364 6 LEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH 85 (254)
Q Consensus 6 ~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 85 (254)
.+....+.+.+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++.+++|++|.
T Consensus 69 ~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~ 148 (245)
T PF00378_consen 69 EEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGP 148 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHH
T ss_pred cccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeec
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhc
Q 025364 86 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 164 (254)
Q Consensus 86 ~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (254)
. +.++++||++++++||+++||||++++++++.....
T Consensus 149 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~------------------------------------------ 186 (245)
T PF00378_consen 149 SRARELLLTGEPISAEEALELGLVDEVVPDEELDEEAL------------------------------------------ 186 (245)
T ss_dssp HHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHH------------------------------------------
T ss_pred ccccccccccccchhHHHHhhcceeEEcCchhhhHHHH------------------------------------------
Confidence 8 999999999999999999999999999888764333
Q ss_pred CCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 025364 165 GLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV 244 (254)
Q Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg 244 (254)
+++++++..+|.+++.+|+.+++.....+++.++.|.+.+...+. ++|++||
T Consensus 187 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~ 238 (245)
T PF00378_consen 187 -------------------------ELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFK---SEDFQEG 238 (245)
T ss_dssp -------------------------HHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHT---SHHHHHH
T ss_pred -------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---CHHHHHH
Confidence 569999999999999999999999888999999999999999998 9999999
Q ss_pred hhheecc
Q 025364 245 SNFQILN 251 (254)
Q Consensus 245 ~~afl~~ 251 (254)
+++|++|
T Consensus 239 ~~~f~eK 245 (245)
T PF00378_consen 239 IAAFLEK 245 (245)
T ss_dssp HHHHHTT
T ss_pred HHHHhCc
Confidence 9999986
No 26
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-36 Score=259.20 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....++..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~ 158 (260)
T PRK07659 79 KFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENK 158 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHH
Confidence 3455667778888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGL 166 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (254)
+++|++||+.++++||+++||||+++ ++++....
T Consensus 159 a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a--------------------------------------------- 192 (260)
T PRK07659 159 AKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAA--------------------------------------------- 192 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHH---------------------------------------------
Confidence 99999999999999999999999999 66665322
Q ss_pred CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhh
Q 025364 167 DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSN 246 (254)
Q Consensus 167 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~ 246 (254)
.+++++|++.||.+++.+|++++.....++++.++.|.+.+...+. ++|++||+.
T Consensus 193 ----------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~ 247 (260)
T PRK07659 193 ----------------------KQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ---TADHKEGIR 247 (260)
T ss_pred ----------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---CHhHHHHHH
Confidence 2568999999999999999999988888999999999999999987 999999999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|+++|+
T Consensus 248 af~~kr~ 254 (260)
T PRK07659 248 AFLEKRL 254 (260)
T ss_pred HHhcCCC
Confidence 9999984
No 27
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-36 Score=259.50 Aligned_cols=173 Identities=23% Similarity=0.291 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++.+|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++||||++++++++.+...
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 194 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCE----------------------------------------------- 194 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998877664333
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
++++++++.+|.+++.+|+.++.....++++.+..|...+..++. ++|++||+++|+
T Consensus 195 --------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~ 251 (255)
T PRK07260 195 --------------------QLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAF---KEDFKEGVRAFS 251 (255)
T ss_pred --------------------HHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 468999999999999999999998888999999999999988887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|+
T Consensus 252 ~kr~ 255 (255)
T PRK07260 252 ERRR 255 (255)
T ss_pred hcCC
Confidence 9875
No 28
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=6.9e-36 Score=258.70 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.++++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l 158 (255)
T PRK09674 79 DPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVL 158 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 3445678889999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||+.++++||+++||||++++++++....
T Consensus 159 ~g~~~~a~eA~~~Glv~~vv~~~~~~~~a--------------------------------------------------- 187 (255)
T PRK09674 159 TGESITAQQAQQAGLVSEVFPPELTLERA--------------------------------------------------- 187 (255)
T ss_pred cCCccCHHHHHHcCCCcEecChHHHHHHH---------------------------------------------------
Confidence 99999999999999999999887765322
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccC
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 252 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k 252 (254)
.+++++|+..||.+++.+|++++.....+++++++.|.+.+...+. ++|++||+++|+++|
T Consensus 188 ----------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~i~af~~kr 248 (255)
T PRK09674 188 ----------------LQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAA---TEDRHEGISAFLEKR 248 (255)
T ss_pred ----------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhccC
Confidence 2568999999999999999999998888999999999999999987 999999999999987
Q ss_pred C
Q 025364 253 H 253 (254)
Q Consensus 253 ~ 253 (254)
+
T Consensus 249 ~ 249 (255)
T PRK09674 249 T 249 (255)
T ss_pred C
Confidence 4
No 29
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-35 Score=258.48 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.+
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 161 (261)
T PRK08138 82 MYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR 161 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++||||++++++++.....
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 194 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRAL----------------------------------------------- 194 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998877654222
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
+++++|++.+|.+++.+|++++.....++++++..|.+.+..++. ++|++||+++|+
T Consensus 195 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~i~af~ 251 (261)
T PRK08138 195 --------------------ELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFD---SEDQKEGMDAFL 251 (261)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHh
Confidence 458889999999999999999988888999999999999999887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|.
T Consensus 252 ~kr~ 255 (261)
T PRK08138 252 EKRK 255 (261)
T ss_pred cCCC
Confidence 9975
No 30
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-35 Score=257.33 Aligned_cols=168 Identities=22% Similarity=0.265 Sum_probs=155.8
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
...++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|++||
T Consensus 88 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g 167 (262)
T PRK08140 88 YNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLG 167 (262)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 34577889999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||.++||||++++++++.....
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 195 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDDAALADEAQ---------------------------------------------------- 195 (262)
T ss_pred CCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999877663222
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|++.||.+++.+|++++.....+++++++.|...+..++. ++|++||+.+|+++|+
T Consensus 196 ---------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~~kr~ 256 (262)
T PRK08140 196 ---------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR---SADYAEGVSAFLEKRA 256 (262)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHhcCCC
Confidence 568999999999999999999988888999999999999988887 9999999999999974
No 31
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-35 Score=258.26 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 88 (254)
..+...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +.
T Consensus 86 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~ 165 (266)
T PRK05981 86 AALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHH
Confidence 34555567788999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 168 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (254)
+|++||++++++||.++||||++++++++.+..
T Consensus 166 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a----------------------------------------------- 198 (266)
T PRK05981 166 ELSLLGEKLPAETALQWGLVNRVVDDAELMAEA----------------------------------------------- 198 (266)
T ss_pred HHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHH-----------------------------------------------
Confidence 999999999999999999999999987766322
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 169 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 169 ~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
.+++++++..||.+++.+|++++...+.++.+.++.|...+...+. ++|++||+.+|
T Consensus 199 --------------------~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~af 255 (266)
T PRK05981 199 --------------------MKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGK---TEDFKEGVGAF 255 (266)
T ss_pred --------------------HHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence 2568899999999999999999988888999999999999988887 99999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
+++|+
T Consensus 256 ~~kr~ 260 (266)
T PRK05981 256 LQKRP 260 (266)
T ss_pred hcCCC
Confidence 99985
No 32
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-35 Score=257.27 Aligned_cols=163 Identities=21% Similarity=0.200 Sum_probs=152.0
Q ss_pred HHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCCCCCH
Q 025364 21 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNG 99 (254)
Q Consensus 21 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~~i~a 99 (254)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.. +.+|++||+++++
T Consensus 94 ~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a 173 (263)
T PRK07799 94 LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITA 173 (263)
T ss_pred HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 457889999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHHHHhc
Q 025364 100 AEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESE 179 (254)
Q Consensus 100 ~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 179 (254)
+||+++||||++++++++....
T Consensus 174 ~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------------------- 195 (263)
T PRK07799 174 AEAKEIGLIGHVVPDGQALDKA---------------------------------------------------------- 195 (263)
T ss_pred HHHHHcCCccEecCcchHHHHH----------------------------------------------------------
Confidence 9999999999999988765322
Q ss_pred cccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 180 ASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 180 ~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
.+++++|++.||.+++.+|++++.....+++++++.|.+.+..++. ++|++||+++|+++|+
T Consensus 196 ---------~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~~~r~ 257 (263)
T PRK07799 196 ---------LELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFL---SEDAKEGPRAFAEKRA 257 (263)
T ss_pred ---------HHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHHccCC
Confidence 2568999999999999999999998888999999999999998887 9999999999999875
No 33
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-35 Score=256.80 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=151.3
Q ss_pred HHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCCCCCHH
Q 025364 22 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGA 100 (254)
Q Consensus 22 ~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~~i~a~ 100 (254)
.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. ++++++||++++++
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~ 166 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQ 166 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHH
Confidence 57899999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHHHHhcc
Q 025364 101 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEA 180 (254)
Q Consensus 101 ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 180 (254)
||+++||||++++++++.+..
T Consensus 167 eA~~~Glv~~vv~~~~l~~~a----------------------------------------------------------- 187 (255)
T PRK06563 167 EALRLGLVQEVVPPGEQLERA----------------------------------------------------------- 187 (255)
T ss_pred HHHHcCCCcEeeCHHHHHHHH-----------------------------------------------------------
Confidence 999999999999887665322
Q ss_pred ccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 181 SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 181 ~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
.+++++|++.||.+++.+|++++.....++.++++.|...+..++. ++|++||+.+|+++|.
T Consensus 188 --------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~~kr~ 249 (255)
T PRK06563 188 --------IELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFT---SEDAKEGVQAFLERRP 249 (255)
T ss_pred --------HHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhcCCC
Confidence 2568999999999999999999988888999999999999999988 9999999999999985
No 34
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-35 Score=256.73 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++.+ +|.. +.+
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~ 162 (262)
T PRK07468 84 EEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARR 162 (262)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHHH
Confidence 34455667888999999999999999999999999999999999999999999999999999999986655 6777 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++||||++++++++.+...
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~----------------------------------------------- 195 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE----------------------------------------------- 195 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998776654332
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
+++++|++.+|.+++.+|++++......+++.++.|...+...+. ++|++||+++|+
T Consensus 196 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~e~~~af~ 252 (262)
T PRK07468 196 --------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWE---TEEAREGIAAFF 252 (262)
T ss_pred --------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 458999999999999999999987666789999999999999887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|.
T Consensus 253 ~kr~ 256 (262)
T PRK07468 253 DKRA 256 (262)
T ss_pred cCCC
Confidence 9975
No 35
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.4e-35 Score=256.17 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=153.4
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
.+..+..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +.++++||
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g 162 (261)
T PRK03580 83 GFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTG 162 (261)
T ss_pred hhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||+++||||++++++++.+...
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 190 (261)
T PRK03580 163 RRMDAEEALRWGIVNRVVPQAELMDRAR---------------------------------------------------- 190 (261)
T ss_pred CccCHHHHHHcCCCcEecCHhHHHHHHH----------------------------------------------------
Confidence 9999999999999999999877764332
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHH----HHHHhhhcCCCCChhhhhhheec
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYR----MSLQGVSRLISGDFYEVSNFQIL 250 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~----~~~~~~~~~~~~d~~eg~~afl~ 250 (254)
+++++|++.+|.+++.+|++++.....+++++++.|.. .+..++. ++|++||+++|++
T Consensus 191 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~d~~e~~~af~e 252 (261)
T PRK03580 191 ---------------ELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLH---SEDALEGPRAFAE 252 (261)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhc---CccHHHHHHHHhc
Confidence 46889999999999999999998888899999999874 5666776 9999999999999
Q ss_pred cCC
Q 025364 251 NKH 253 (254)
Q Consensus 251 ~k~ 253 (254)
+|+
T Consensus 253 kr~ 255 (261)
T PRK03580 253 KRD 255 (261)
T ss_pred CCC
Confidence 975
No 36
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-35 Score=256.34 Aligned_cols=162 Identities=24% Similarity=0.291 Sum_probs=148.6
Q ss_pred HHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCCCCCHH
Q 025364 22 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGA 100 (254)
Q Consensus 22 ~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~~i~a~ 100 (254)
.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +.++++||+.++++
T Consensus 89 ~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 89 SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHH
Confidence 34689999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHHHHhcc
Q 025364 101 EMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEA 180 (254)
Q Consensus 101 ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 180 (254)
||.++||||++++++++.+...
T Consensus 169 eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------------------- 190 (259)
T PRK06494 169 EGLELGFVNEVVPAGELLAAAE---------------------------------------------------------- 190 (259)
T ss_pred HHHHcCCCcEecCHhHHHHHHH----------------------------------------------------------
Confidence 9999999999998877664332
Q ss_pred ccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 181 SLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVRE--YRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 181 ~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e--~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+..||.+++.+|++++.....+++++++.| ...+..++. ++|++||+++|+++|.
T Consensus 191 ---------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~---~~d~~eg~~af~~kr~ 253 (259)
T PRK06494 191 ---------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRA---SQDYIEGPKAFAEKRP 253 (259)
T ss_pred ---------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---CccHHHHHHHHHccCC
Confidence 468999999999999999999998888999999999 456677777 9999999999999874
No 37
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-35 Score=256.00 Aligned_cols=173 Identities=24% Similarity=0.320 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +.+
T Consensus 80 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 80 DELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 4566777888999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||+++||||++++++++....
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a------------------------------------------------ 191 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEA------------------------------------------------ 191 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877665322
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+++++|++.||.++..+|+.+++....++++++..|.+.+..++. ++|+++|+++|+
T Consensus 192 -------------------~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~af~ 249 (259)
T PRK06688 192 -------------------DAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLR---TPDFREGATAFI 249 (259)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 2568899999999999999999998888999999999999999987 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|+
T Consensus 250 ~~~~ 253 (259)
T PRK06688 250 EKRK 253 (259)
T ss_pred cCCC
Confidence 9875
No 38
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-35 Score=254.14 Aligned_cols=160 Identities=21% Similarity=0.201 Sum_probs=149.6
Q ss_pred hhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCCCCCHHHH
Q 025364 24 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAEM 102 (254)
Q Consensus 24 ~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~~i~a~ea 102 (254)
..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++++++||++++++||
T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA 167 (254)
T PRK08252 88 RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERA 167 (254)
T ss_pred hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHHHHhcccc
Q 025364 103 MACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEASL 182 (254)
Q Consensus 103 ~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 182 (254)
+++||||++++++++.+.
T Consensus 168 ~~~Glv~~vv~~~~l~~~-------------------------------------------------------------- 185 (254)
T PRK08252 168 HELGLVNRLTEPGQALDA-------------------------------------------------------------- 185 (254)
T ss_pred HHcCCcceecCcchHHHH--------------------------------------------------------------
Confidence 999999999998776532
Q ss_pred CCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 183 INDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 183 ~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+.+++++|+..||.+++.+|++++.....+++++++.|...+..++. ++|++||+.+|+++|+
T Consensus 186 -----a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~eg~~af~~kr~ 248 (254)
T PRK08252 186 -----ALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFT---SADAKEGATAFAEKRA 248 (254)
T ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc---CchHHHHHHHHhcCCC
Confidence 23568999999999999999999988888999999999999998887 9999999999999875
No 39
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-35 Score=254.73 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHH
Q 025364 13 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLA 91 (254)
Q Consensus 13 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ 91 (254)
...+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++ +++++|.. +++|+
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~~l~ 163 (262)
T PRK05995 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAARRYF 163 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999987765 77888988 99999
Q ss_pred hcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHH
Q 025364 92 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEE 171 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (254)
+||++++++||+++||||++++++++.....
T Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 194 (262)
T PRK05995 164 LTAERFDAAEALRLGLVHEVVPAEALDAKVD------------------------------------------------- 194 (262)
T ss_pred HcCCccCHHHHHHcCCCCeecCHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999998777664332
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHH-HHHHHHHHHHhhhcCCCCChhhhhhheec
Q 025364 172 IIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLISGDFYEVSNFQIL 250 (254)
Q Consensus 172 i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~~~d~~eg~~afl~ 250 (254)
+++++|++.||.+++.+|++++.....++.+. ++.|...+...+. ++|++||+.+|++
T Consensus 195 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~af~~ 253 (262)
T PRK05995 195 ------------------ELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRA---TEEAREGVAAFLE 253 (262)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhc---CHHHHHHHHHHhc
Confidence 46899999999999999999998878889888 8888888888887 9999999999999
Q ss_pred cCC
Q 025364 251 NKH 253 (254)
Q Consensus 251 ~k~ 253 (254)
+|.
T Consensus 254 kr~ 256 (262)
T PRK05995 254 KRK 256 (262)
T ss_pred CCC
Confidence 985
No 40
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=2.7e-35 Score=257.80 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCC-CCCccHHHHHhccChHH-HH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGF-HPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~P~~g~~~~l~r~~g~~-a~ 88 (254)
.+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++|+++++++++|.. ++
T Consensus 91 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~ 170 (278)
T PLN03214 91 EFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAE 170 (278)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHH
Confidence 44444456788899999999999999999999999999999999999999999999999 59999999999999998 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDT 168 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (254)
+|++||+.++++||+++||||++++++++.+..
T Consensus 171 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------- 203 (278)
T PLN03214 171 SLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAA----------------------------------------------- 203 (278)
T ss_pred HHHHcCCccCHHHHHHcCCCcEecChHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877665322
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 169 VEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 169 ~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
.+++++|++.+|.+++.+|+++++....+++++++.|.+.+...+. ++|++||+++|
T Consensus 204 --------------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~af 260 (278)
T PLN03214 204 --------------------ASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLS---EPSIIKALGGV 260 (278)
T ss_pred --------------------HHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 2568999999999999999999988888999999999998888887 99999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
+++.+
T Consensus 261 lek~~ 265 (278)
T PLN03214 261 MERLS 265 (278)
T ss_pred HHHHh
Confidence 98753
No 41
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-35 Score=256.10 Aligned_cols=167 Identities=25% Similarity=0.264 Sum_probs=154.0
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++|++||+
T Consensus 98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~ 177 (272)
T PRK06210 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSAR 177 (272)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCC
Confidence 4556789999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
.+++++|+++||||++++++++.....
T Consensus 178 ~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------------- 204 (272)
T PRK06210 178 TFYAEEALRLGLVNRVVPPDELMERTL----------------------------------------------------- 204 (272)
T ss_pred ccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999998776653222
Q ss_pred HHhccccCCChHHHHHHHHHHhc-CchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~-~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+.. +|.++..+|+++++....++++.++.|...+...+. ++|++||+++|+++|+
T Consensus 205 --------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~af~~kr~ 266 (272)
T PRK06210 205 --------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQ---RPDFIEGVASFLEKRP 266 (272)
T ss_pred --------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHhccCC
Confidence 468889985 999999999999998888999999999999988887 9999999999999985
No 42
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-35 Score=252.32 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.++...++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++
T Consensus 79 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 79 DGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 4456667778889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||+++||||+++ +++....
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a------------------------------------------------ 188 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAA------------------------------------------------ 188 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHH------------------------------------------------
Confidence 99999999999999999999999 4444322
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
.+++++|++.||.+++.+|++++.... .+++++++.|...+...+. ++|++||+++|
T Consensus 189 -------------------~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af 246 (249)
T PRK05870 189 -------------------LELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQ---SPEFAARLAAA 246 (249)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHH
Confidence 256899999999999999999999887 8999999999999999887 99999999999
Q ss_pred ecc
Q 025364 249 ILN 251 (254)
Q Consensus 249 l~~ 251 (254)
+++
T Consensus 247 ~~~ 249 (249)
T PRK05870 247 QRR 249 (249)
T ss_pred hcC
Confidence 874
No 43
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-35 Score=251.03 Aligned_cols=170 Identities=18% Similarity=0.174 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+.....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++.+|++++|.. +++
T Consensus 78 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~ 154 (249)
T PRK07938 78 DANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRA 154 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHH
Confidence 344555677889999999999999999999999999999999999999999999999986 4567899999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||+++||||++++++++....
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------------ 186 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAA------------------------------------------------ 186 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877766433
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+++++|+..||.+++.+|++++.....++++.++.|.......+. ++|++||+++|+
T Consensus 187 -------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~ 244 (249)
T PRK07938 187 -------------------LEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNL---AGVSDEHRDAFV 244 (249)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---CccHHHHHHHHH
Confidence 2568999999999999999999988888999999999999888887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|+
T Consensus 245 ekr~ 248 (249)
T PRK07938 245 EKRK 248 (249)
T ss_pred hcCC
Confidence 9985
No 44
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=5.1e-35 Score=253.82 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=149.2
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
..+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.++++++|.. +++|++||
T Consensus 86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g 165 (259)
T TIGR01929 86 VLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLC 165 (259)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhC
Confidence 34577789999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||+++||||++++++++.....
T Consensus 166 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------------- 193 (259)
T TIGR01929 166 RQYDAEQALDMGLVNTVVPLADLEKETV---------------------------------------------------- 193 (259)
T ss_pred CccCHHHHHHcCCcccccCHHHHHHHHH----------------------------------------------------
Confidence 9999999999999999999776654222
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+..||.+++.+|++++..... .......|.+.+...+. ++|++||+.+|+++|+
T Consensus 194 ---------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~---~~d~~egi~af~~kr~ 253 (259)
T TIGR01929 194 ---------------RWCREILQKSPMAIRMLKAALNADCDG-QAGLQELAGNATMLFYM---TEEGQEGRNAFLEKRQ 253 (259)
T ss_pred ---------------HHHHHHHhCCHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhc---CccHHHHHHHHhccCC
Confidence 568999999999999999999976543 45556667777777777 9999999999999975
No 45
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.1e-35 Score=254.57 Aligned_cols=169 Identities=21% Similarity=0.222 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
..+++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ +.+++|.. ++++++
T Consensus 88 ~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~~a~~l~l 166 (265)
T PRK05674 88 RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGERAARRYAL 166 (265)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999999999987764 77888888 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||+.++++||+++|||+++++++++.+...
T Consensus 167 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 196 (265)
T PRK05674 167 TAERFDGRRARELGLLAESYPAAELEAQVE-------------------------------------------------- 196 (265)
T ss_pred hCcccCHHHHHHCCCcceecCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999998776664222
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHhhhcCCCCChhhhhhheecc
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVR-EYRMSLQGVSRLISGDFYEVSNFQILN 251 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~-e~~~~~~~~~~~~~~d~~eg~~afl~~ 251 (254)
+++++|++.||.+++.+|+.++.....+++++++. +...+...+. ++|++||+++|+++
T Consensus 197 -----------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~e~~~af~~k 256 (265)
T PRK05674 197 -----------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRV---SAEGQEGLRAFLEK 256 (265)
T ss_pred -----------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhc---CHHHHHHHHHHHcc
Confidence 56899999999999999999999888889888875 4456666766 99999999999998
Q ss_pred CC
Q 025364 252 KH 253 (254)
Q Consensus 252 k~ 253 (254)
|+
T Consensus 257 r~ 258 (265)
T PRK05674 257 RT 258 (265)
T ss_pred CC
Confidence 85
No 46
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-35 Score=251.92 Aligned_cols=169 Identities=19% Similarity=0.243 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 90 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 90 (254)
+...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +.++
T Consensus 82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l 161 (251)
T PRK06023 82 FGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFAL 161 (251)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHH
Confidence 344556778899999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++||||++++.+++.....
T Consensus 162 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 193 (251)
T PRK06023 162 LALGEGFSAEAAQEAGLIWKIVDEEAVEAETL------------------------------------------------ 193 (251)
T ss_pred HHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999998777664322
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 250 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~ 250 (254)
+++++|+..||.+++.+|++++... ..+++.++.|.+.+...+. ++|++||+++|++
T Consensus 194 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~---~~~~~e~~~af~e 250 (251)
T PRK06023 194 -------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLK---SAEARAAFEAFMR 250 (251)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhC---CHHHHHHHHHHhc
Confidence 5689999999999999999998764 4789999999988888887 9999999999987
Q ss_pred c
Q 025364 251 N 251 (254)
Q Consensus 251 ~ 251 (254)
+
T Consensus 251 ~ 251 (251)
T PRK06023 251 R 251 (251)
T ss_pred C
Confidence 4
No 47
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.1e-34 Score=251.98 Aligned_cols=173 Identities=16% Similarity=0.218 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.++++++|.. +.+
T Consensus 80 ~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~ 159 (261)
T PRK11423 80 SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKE 159 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHH
Confidence 3455567788899999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||+++||||++++++++....
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a------------------------------------------------ 191 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFT------------------------------------------------ 191 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877766433
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCH-HHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTF-DECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~-~~~-~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
.+++++|++.+|.+++.+|++++.... ..+ ...++.|.+....++. ++|++||+.+
T Consensus 192 -------------------~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~d~~eg~~a 249 (261)
T PRK11423 192 -------------------LQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYD---SEDYQEGMNA 249 (261)
T ss_pred -------------------HHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhC---ChhHHHHHHH
Confidence 356899999999999999999996543 344 6888889888888887 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|.
T Consensus 250 f~~kr~ 255 (261)
T PRK11423 250 FLEKRK 255 (261)
T ss_pred HhccCC
Confidence 999975
No 48
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-34 Score=252.28 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...++...++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (268)
T PRK07327 88 RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKA 167 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHH
Confidence 445566677888999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.++++||++++++||+++||||++++++++.+..
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 201 (268)
T PRK07327 168 KYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKA---------------------------------------------- 201 (268)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887766422
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF---QTFDECLVREYRMSLQGVSRLISGDFYEV 244 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~---~~~~~~l~~e~~~~~~~~~~~~~~d~~eg 244 (254)
.+++++|++.||.+++.+|++++.... ..+++.+..|. ..+. ++|++||
T Consensus 202 ---------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~---~~d~~eg 253 (268)
T PRK07327 202 ---------------------LEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFS---GPDVREG 253 (268)
T ss_pred ---------------------HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHcc---ChhHHHH
Confidence 256999999999999999999996532 24555555542 3455 9999999
Q ss_pred hhheeccCC
Q 025364 245 SNFQILNKH 253 (254)
Q Consensus 245 ~~afl~~k~ 253 (254)
+.+|+++|+
T Consensus 254 ~~af~ekr~ 262 (268)
T PRK07327 254 LASLREKRA 262 (268)
T ss_pred HHHHHhcCC
Confidence 999999985
No 49
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=1.9e-34 Score=249.11 Aligned_cols=171 Identities=21% Similarity=0.234 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.++....+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|.. +++
T Consensus 73 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~ 151 (251)
T TIGR03189 73 AMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAED 151 (251)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHH
Confidence 345556678889999999999999999999999999999999999999999999999999874 577899999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++|||++++++++ +...+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~~-~~a~~----------------------------------------------- 183 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDPE-NAALA----------------------------------------------- 183 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcHH-HHHHH-----------------------------------------------
Confidence 999999999999999999999997432 11111
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHhhhcCCCCChhhhhhhe
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLV-REYRMSLQGVSRLISGDFYEVSNFQ 248 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~-~e~~~~~~~~~~~~~~d~~eg~~af 248 (254)
.++++|++.||.+++.+|++++.....++++.+. .|......++. ++|++||+++|
T Consensus 184 --------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~---s~d~~eg~~af 240 (251)
T TIGR03189 184 --------------------WFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMA---THDAVEGLNAF 240 (251)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhC---CHhHHHHHHHH
Confidence 1368899999999999999999888888888774 77777888887 99999999999
Q ss_pred eccCC
Q 025364 249 ILNKH 253 (254)
Q Consensus 249 l~~k~ 253 (254)
+++|+
T Consensus 241 ~ekr~ 245 (251)
T TIGR03189 241 LEKRP 245 (251)
T ss_pred HhcCC
Confidence 99985
No 50
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-34 Score=253.03 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCC-CccHHHHHhccChHH-HHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHP-DAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P-~~g~~~~l~r~~g~~-a~~ 89 (254)
++..+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.. +.+
T Consensus 94 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~ 173 (276)
T PRK05864 94 SMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFE 173 (276)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHH
Confidence 445566778889999999999999999999999999999999999999999999999997 788999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||+++||||++++++++.+...
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 206 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY----------------------------------------------- 206 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998877664322
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccC-CHHHHHHHHHHHHH-HhhhcCCCCChhhhhhh
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSL-QGVSRLISGDFYEVSNF 247 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~-~~~~~~~~~d~~eg~~a 247 (254)
+++++|+..||.+++.+|+.++..... ++++.+..|..... ..+. ++|++||+++
T Consensus 207 --------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~~d~~e~~~a 263 (276)
T PRK05864 207 --------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLL---TANFEEAVAA 263 (276)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc---ChhHHHHHHH
Confidence 468999999999999999999987665 79999888875432 3455 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|.
T Consensus 264 f~~kr~ 269 (276)
T PRK05864 264 RAEKRP 269 (276)
T ss_pred HhccCC
Confidence 999974
No 51
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.1e-34 Score=252.43 Aligned_cols=169 Identities=16% Similarity=0.147 Sum_probs=152.9
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|++||+
T Consensus 89 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~ 168 (265)
T PLN02888 89 TDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAM 168 (265)
T ss_pred HHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCC
Confidence 4566788999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
+++++||+++||||++++++++.+..
T Consensus 169 ~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------------------ 194 (265)
T PLN02888 169 PLTAETAERWGLVNHVVEESELLKKA------------------------------------------------------ 194 (265)
T ss_pred ccCHHHHHHcCCccEeeChHHHHHHH------------------------------------------------------
Confidence 99999999999999999877665322
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
.+++++|++.+|.+++.+|++++.....++++++..|...+..++. ..++|++||+++|+++|.
T Consensus 195 -------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~d~~e~~~af~ekr~ 258 (265)
T PLN02888 195 -------------REVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYN-GMTKEQFQKMQEFIAGRS 258 (265)
T ss_pred -------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHhcCC
Confidence 2568999999999999999999988888999999999887776641 028999999999999985
No 52
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-34 Score=250.20 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
...+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++.++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 34455666778889999999999999999999999999999999999999999999999996 4567799999988 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.+|++||++++++||+++||||++++++++.+...
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~--------------------------------------------- 190 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM--------------------------------------------- 190 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877664332
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
+++++|++.||.+++.+|+.++.....+++++++.|...+...+. ++|++||+++
T Consensus 191 ----------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~egi~a 245 (257)
T PRK06495 191 ----------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAK---TEDAKEAQRA 245 (257)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChHHHHHHHH
Confidence 568999999999999999999998888999999999999998887 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|.
T Consensus 246 f~~kr~ 251 (257)
T PRK06495 246 FLEKRP 251 (257)
T ss_pred HhccCC
Confidence 999975
No 53
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=248.65 Aligned_cols=168 Identities=23% Similarity=0.232 Sum_probs=156.2
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
+.+.+..+.+.+||||+++||+|+|||++|++.||+|||+++++|++|+.++|++|.+|++.+|+|.+|.. |+++++||
T Consensus 116 ~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg 195 (290)
T KOG1680|consen 116 FLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTG 195 (290)
T ss_pred ccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhc
Confidence 44456666789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||.++|||++|++.+++.. +
T Consensus 196 ~~~~AqeA~~~GlVn~Vvp~~~~l~--e---------------------------------------------------- 221 (290)
T KOG1680|consen 196 RRLGAQEAKKIGLVNKVVPSGDALG--E---------------------------------------------------- 221 (290)
T ss_pred CcccHHHHHhCCceeEeecchhHHH--H----------------------------------------------------
Confidence 9999999999999999999888542 2
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
|.+++++|+++||.+++..|++++.+.+.++.+++..|...+...+. ++|.+|||.+|.++|.
T Consensus 222 -------------Av~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~---~~d~~Eg~~~f~~kr~ 284 (290)
T KOG1680|consen 222 -------------AVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFA---TEDRLEGMTAFAEKRK 284 (290)
T ss_pred -------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhh---hHHHHHHHHHhcccCC
Confidence 22579999999999999999999999999999999999999999987 9999999999998874
No 54
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-34 Score=248.16 Aligned_cols=167 Identities=21% Similarity=0.280 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+....++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++
T Consensus 70 ~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 149 (243)
T PRK07854 70 DFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARA 149 (243)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHH
Confidence 4556667788899999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||++++++||+++||||++++ ++ +.
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~~---~a---------------------------------------------- 177 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---LA---DA---------------------------------------------- 177 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---HH---HH----------------------------------------------
Confidence 999999999999999999999964 22 11
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+++++|++.||.++..+|++++.. .++++.++.|.......+. ++|++||+.+|+
T Consensus 178 -------------------~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~---~~d~~eg~~af~ 233 (243)
T PRK07854 178 -------------------QAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWA---SQDAIEAQVARI 233 (243)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhc---CchHHHHHHHHh
Confidence 1468999999999999999999976 6799999999999988887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|.
T Consensus 234 ~kr~ 237 (243)
T PRK07854 234 EKRP 237 (243)
T ss_pred CCCC
Confidence 9874
No 55
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-34 Score=249.05 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=151.5
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcC
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTG 94 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg 94 (254)
+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +.++++||
T Consensus 91 ~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg 170 (262)
T PRK07509 91 AQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTA 170 (262)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcC
Confidence 34556678899999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHH
Q 025364 95 AKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIID 174 (254)
Q Consensus 95 ~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 174 (254)
++++++||+++||||+++++ +..
T Consensus 171 ~~~~a~eA~~~Glv~~vv~~--~~~------------------------------------------------------- 193 (262)
T PRK07509 171 RVFSAEEALELGLVTHVSDD--PLA------------------------------------------------------- 193 (262)
T ss_pred CCcCHHHHHHcCChhhhhch--HHH-------------------------------------------------------
Confidence 99999999999999999843 221
Q ss_pred HHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 175 SLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 175 ~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
.+.+++++|++.||.++..+|++++.....++++++..|.+.....+. ++|++||+.+|+++|+
T Consensus 194 ------------~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~d~~e~~~af~ekr~ 257 (262)
T PRK07509 194 ------------AALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLL---GKNQKIAVKAQMKKRA 257 (262)
T ss_pred ------------HHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHhcCCC
Confidence 122568999999999999999999998888999999999999998887 9999999999999975
No 56
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-34 Score=249.02 Aligned_cols=172 Identities=22% Similarity=0.182 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 89 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 89 (254)
..++..+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++++++..+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999999999999999999999997656999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||+++++++|+++||||++++ ++....
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a------------------------------------------------ 193 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAV------------------------------------------------ 193 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHH------------------------------------------------
Confidence 999999999999999999999864 344222
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+++++|++.||.+++.+|+++++.....+++.++.|...+..++. ++|++||+++|+
T Consensus 194 -------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~af~ 251 (260)
T PRK07827 194 -------------------AALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFV---SDEAREGMTAFL 251 (260)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc---ChhHHHHHHHHh
Confidence 2568999999999999999999998888999999999999999887 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
++|.
T Consensus 252 ~kr~ 255 (260)
T PRK07827 252 QKRP 255 (260)
T ss_pred cCCC
Confidence 9874
No 57
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2.4e-34 Score=249.14 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
.....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|.. ++++++
T Consensus 81 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll 160 (256)
T TIGR03210 81 LPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWY 160 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999999999998888889999999998 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||++++++||+++||||++++++++.....
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 190 (256)
T TIGR03210 161 LCRRYTAQEALAMGLVNAVVPHDQLDAEVQ-------------------------------------------------- 190 (256)
T ss_pred hCCCcCHHHHHHcCCceeeeCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999877664332
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHhhhcCCCCChhhhhhheecc
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTF-DECLVREYRMSLQGVSRLISGDFYEVSNFQILN 251 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~-~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~ 251 (254)
+++++|++.||.+++.+|++++....... .+. .|...+...+. ++|++||+.+|+++
T Consensus 191 -----------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~---~~d~~e~~~af~~k 248 (256)
T TIGR03210 191 -----------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYD---TAESREGVKAFQEK 248 (256)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHcc---ChhHHHHHHHHhcc
Confidence 56999999999999999999997654321 122 23445666666 99999999999999
Q ss_pred CC
Q 025364 252 KH 253 (254)
Q Consensus 252 k~ 253 (254)
|+
T Consensus 249 r~ 250 (256)
T TIGR03210 249 RK 250 (256)
T ss_pred CC
Confidence 85
No 58
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-34 Score=251.17 Aligned_cols=166 Identities=15% Similarity=0.160 Sum_probs=149.0
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.++++++|.. +.+|++||+
T Consensus 97 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~ 176 (273)
T PRK07396 97 LDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCR 176 (273)
T ss_pred HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
.++++||+++||||++++++++.+...
T Consensus 177 ~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------------- 203 (273)
T PRK07396 177 QYDAQEALDMGLVNTVVPLADLEKETV----------------------------------------------------- 203 (273)
T ss_pred CcCHHHHHHcCCcCeecCHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999998876664332
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+..+|.+++.+|++++.... .++...+.|.+.+...+. ++|++||+.+|+++|+
T Consensus 204 --------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~af~~kr~ 263 (273)
T PRK07396 204 --------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYM---TEEAQEGRNAFNEKRQ 263 (273)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhc---ChhHHHHHHHHhCCCC
Confidence 56899999999999999999997654 455556677777877777 9999999999999974
No 59
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.9e-34 Score=248.01 Aligned_cols=172 Identities=26% Similarity=0.341 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GE 88 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~ 88 (254)
..++...+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++++|++|.. +.
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 81 ENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 36778888999999999999999999999999999999999999999999999999999999879999999999999 99
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhccc-CChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVS-EKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
++++||+.++++||.++|||+++++. +++.....
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~--------------------------------------------- 195 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERAL--------------------------------------------- 195 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999985 45553332
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
+++++++. +|.++..+|+.++......+++.+..|...+...+. ++|++||+++
T Consensus 196 ----------------------~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~d~~eg~~a 249 (257)
T COG1024 196 ----------------------ELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFS---SEDFREGVRA 249 (257)
T ss_pred ----------------------HHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---ChhHHHHHHH
Confidence 34666665 999999999999998777799999999999888766 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|++ |+
T Consensus 250 ~~~-r~ 254 (257)
T COG1024 250 FLE-RK 254 (257)
T ss_pred HHc-cC
Confidence 998 53
No 60
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-34 Score=252.25 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 90 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 90 (254)
+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +++|
T Consensus 98 ~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l 177 (296)
T PRK08260 98 VRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEW 177 (296)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHH
Confidence 334455678889999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++||||++++++++....
T Consensus 178 lltg~~~~a~eA~~~GLv~~vv~~~~l~~~a------------------------------------------------- 208 (296)
T PRK08260 178 VYSGRVFDAQEALDGGLVRSVHPPDELLPAA------------------------------------------------- 208 (296)
T ss_pred HHcCCccCHHHHHHCCCceeecCHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999877665322
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhc-CchHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEA-SPLSLKVSLRSIREGRF--QTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~-~p~a~~~~k~~l~~~~~--~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
.+++++|+.. +|.+++.+|++++.... ..+.. ...|...+..++. ++|++||+.+
T Consensus 209 ------------------~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~~e~~~~~~~~~---~~d~~egi~a 266 (296)
T PRK08260 209 ------------------RALAREIADNTSPVSVALTRQMMWRMAGADHPMEA-HRVDSRAIYSRGR---SGDGKEGVSS 266 (296)
T ss_pred ------------------HHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHHcc---ChhHHHHHHH
Confidence 2468899885 99999999999998743 23443 4567777777776 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 267 f~~kr~ 272 (296)
T PRK08260 267 FLEKRP 272 (296)
T ss_pred HhcCCC
Confidence 999875
No 61
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-34 Score=248.25 Aligned_cols=160 Identities=22% Similarity=0.181 Sum_probs=147.7
Q ss_pred HhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCCCCCHHH
Q 025364 23 LGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGAKLNGAE 101 (254)
Q Consensus 23 i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~~i~a~e 101 (254)
+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +.++++||+.++++|
T Consensus 89 ~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~e 168 (254)
T PRK08259 89 RMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADE 168 (254)
T ss_pred HhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHHHHhccc
Q 025364 102 MMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDSLESEAS 181 (254)
Q Consensus 102 a~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 181 (254)
|+++||||++++++++.+...
T Consensus 169 A~~~Glv~~vv~~~~l~~~a~----------------------------------------------------------- 189 (254)
T PRK08259 169 ALAIGLANRVVPKGQARAAAE----------------------------------------------------------- 189 (254)
T ss_pred HHHcCCCCEeeChhHHHHHHH-----------------------------------------------------------
Confidence 999999999999887764332
Q ss_pred cCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 182 LINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 182 ~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|++.||.+++.+|++++.....+++++++.|...+...+ ++|++||+++|+++|.
T Consensus 190 --------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~----~~d~~egi~af~~~~~ 249 (254)
T PRK08259 190 --------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL----AAEALEGAARFAAGAG 249 (254)
T ss_pred --------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH----hhHHHHHHHHHHhhhc
Confidence 56899999999999999999998888899999999998777666 4999999999999874
No 62
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-34 Score=247.82 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccc-cCCCCCccHHHHHhccChHH-H
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL-IGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
..+.....+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|+++++++++|.. +
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 345556677888999999999999999999999999999999999999999999996 99999999999999999998 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCC
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLD 167 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (254)
+++++||++++++||+++||||++++++++.+..
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a---------------------------------------------- 198 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARA---------------------------------------------- 198 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999987766422
Q ss_pred CHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhh
Q 025364 168 TVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNF 247 (254)
Q Consensus 168 ~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~a 247 (254)
.+++++|+..||.+++.+|+.++......++ .+.+.+...+. ++|++||+.+
T Consensus 199 ---------------------~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~----~~~~~~~~~~~---~~~~~e~~~a 250 (262)
T PRK06144 199 ---------------------DALAELLAAHAPLTLRATKEALRRLRREGLP----DGDDLIRMCYM---SEDFREGVEA 250 (262)
T ss_pred ---------------------HHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH----HHHHHHHHHhc---ChHHHHHHHH
Confidence 2569999999999999999999977655443 34556667776 9999999999
Q ss_pred eeccCC
Q 025364 248 QILNKH 253 (254)
Q Consensus 248 fl~~k~ 253 (254)
|+++|+
T Consensus 251 f~~kr~ 256 (262)
T PRK06144 251 FLEKRP 256 (262)
T ss_pred HhcCCC
Confidence 999874
No 63
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-34 Score=244.40 Aligned_cols=170 Identities=21% Similarity=0.232 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFL 90 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l 90 (254)
++.+.+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..+.++
T Consensus 73 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~l 152 (248)
T PRK06072 73 DLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEI 152 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHH
Confidence 34455677888899999999999999999999999999999999999999999999999999999999999999779999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++||||.+ +++.+ +
T Consensus 153 ll~g~~~~a~eA~~~Glv~~~---~~~~~--~------------------------------------------------ 179 (248)
T PRK06072 153 LVLGGEFTAEEAERWGLLKIS---EDPLS--D------------------------------------------------ 179 (248)
T ss_pred HHhCCccCHHHHHHCCCcccc---chHHH--H------------------------------------------------
Confidence 999999999999999999853 22321 1
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheec
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQIL 250 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~ 250 (254)
+.+++++|++.||.+++.+|++++.....++++.++.|.+.+..++. ++|++||+++|++
T Consensus 180 -----------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~d~~eg~~af~~ 239 (248)
T PRK06072 180 -----------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK---TEDFKEGISSFKE 239 (248)
T ss_pred -----------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhC---ChhHHHHHHHHhc
Confidence 22568999999999999999999988888999999999999988887 9999999999999
Q ss_pred cCC
Q 025364 251 NKH 253 (254)
Q Consensus 251 ~k~ 253 (254)
+|+
T Consensus 240 kr~ 242 (248)
T PRK06072 240 KRE 242 (248)
T ss_pred CCC
Confidence 985
No 64
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.3e-33 Score=249.98 Aligned_cols=165 Identities=13% Similarity=0.110 Sum_probs=147.8
Q ss_pred HHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEe-CCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 18 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 18 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
++...+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++.+|+|++|.. +.+|++||+
T Consensus 126 ~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~ 205 (302)
T PRK08321 126 EVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGR 205 (302)
T ss_pred HHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence 46677889999999999999999999999999999999 6899999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
+++|+||+++||||++++++++.....
T Consensus 206 ~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------------- 232 (302)
T PRK08321 206 TYSAEEAHDMGAVNAVVPHAELETEAL----------------------------------------------------- 232 (302)
T ss_pred ccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999877664332
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+..+|.+++.+|++++.... ...+....|.+.+..++. ++|++||+.+|+++|+
T Consensus 233 --------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~---~~d~~egi~af~ekr~ 292 (302)
T PRK08321 233 --------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYM---TDEAQEGRDAFLEKRD 292 (302)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhc---CHHHHHHHHHHhccCC
Confidence 56999999999999999999987655 344445568888888887 9999999999999975
No 65
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.4e-33 Score=251.54 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=146.2
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|++||+
T Consensus 151 ~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~ 230 (327)
T PLN02921 151 LDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLAR 230 (327)
T ss_pred HHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 4567789999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
.++|+||+++||||++++++++.....
T Consensus 231 ~~~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------------------------- 257 (327)
T PLN02921 231 FYTASEALKMGLVNTVVPLDELEGETV----------------------------------------------------- 257 (327)
T ss_pred cCCHHHHHHCCCceEEeCHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999998877664332
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
+++++|+++||.+++.+|++++..... .......+...+..++. ++|++||+.+|+++|.
T Consensus 258 --------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~egi~Af~ekr~ 317 (327)
T PLN02921 258 --------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYG---SEEGNEGRTAYLEGRA 317 (327)
T ss_pred --------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhc---CHHHHHHHHHHhccCC
Confidence 468999999999999999999987553 33333444466667776 9999999999999974
No 66
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.9e-33 Score=241.52 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=151.7
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +.++++||+
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~ 163 (249)
T PRK07110 84 ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTAR 163 (249)
T ss_pred HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCC
Confidence 5688899999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
+++++||+++|||+++++++++.+..
T Consensus 164 ~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------------------ 189 (249)
T PRK07110 164 YYRGAELKKRGVPFPVLPRAEVLEKA------------------------------------------------------ 189 (249)
T ss_pred ccCHHHHHHcCCCeEEeChHHHHHHH------------------------------------------------------
Confidence 99999999999999999877665322
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
.+.++++++.||.+++.+|+.++.....++++.++.|...+...+. ++|++||+++..
T Consensus 190 -------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~---~~~~~egi~~~~ 247 (249)
T PRK07110 190 -------------LELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH---QPEVKRRIESLY 247 (249)
T ss_pred -------------HHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC---CHhHHHHHHHhc
Confidence 2568999999999999999999998888999999999999999998 999999998753
No 67
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.2e-33 Score=242.02 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
...++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++ .++++++|.. ++++++
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~-~~l~~~vg~~~a~~l~l 161 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVL-PFLIRRIGTQKAHYMTL 161 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhh-HHHHHHhCHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999998754 5788889988 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||++++++||+++||||+++++++.. ..
T Consensus 162 ~g~~~~a~eA~~~Glv~~vv~~~~~~--~~-------------------------------------------------- 189 (255)
T PRK07112 162 MTQPVTAQQAFSWGLVDAYGANSDTL--LR-------------------------------------------------- 189 (255)
T ss_pred hCCcccHHHHHHcCCCceecCcHHHH--HH--------------------------------------------------
Confidence 99999999999999999999754421 11
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccC
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNK 252 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k 252 (254)
+++++|+..+|.+++.+|++++.. ...+.+.++.|.......+. ++|++||+.+|+++|
T Consensus 190 -----------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~---~~~~~eg~~af~~kr 248 (255)
T PRK07112 190 -----------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFA---DPENLRKIARYVETG 248 (255)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHc---ChHHHHHHHHHHcCC
Confidence 458899999999999999999875 44789999999999888887 999999999999998
Q ss_pred C
Q 025364 253 H 253 (254)
Q Consensus 253 ~ 253 (254)
.
T Consensus 249 ~ 249 (255)
T PRK07112 249 K 249 (255)
T ss_pred C
Confidence 5
No 68
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3.5e-32 Score=255.60 Aligned_cols=172 Identities=14% Similarity=0.007 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEE-ccccccHH-HHhhhhCCeEEE-------eCCceEeccccccCCCCCccHHHHHhcc
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAIL-NGVTMGGG-AGVSIPGTFRVA-------CGKTVFATPETLIGFHPDAGASFYLSHL 82 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 82 (254)
++....+++..|..+||||||+| ||+|+||| ++|+++||+||+ +++++|++||+++|++|++|++++|+++
T Consensus 350 ~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~ 429 (546)
T TIGR03222 350 TIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATR 429 (546)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHH
Confidence 33444567889999999999999 89999999 999999999999 8999999999999999999999999999
Q ss_pred C-hHH-H--HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHH
Q 025364 83 P-GHL-G--EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 158 (254)
Q Consensus 83 ~-g~~-a--~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
+ |.. + ..+++||++++++||+++|||+++++++++.+...
T Consensus 430 v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~------------------------------------ 473 (546)
T TIGR03222 430 FYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIR------------------------------------ 473 (546)
T ss_pred hcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHH------------------------------------
Confidence 7 876 7 55999999999999999999999999887764333
Q ss_pred HHHHhcCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHH-HHHHHHHHHHhhhcCC
Q 025364 159 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLI 237 (254)
Q Consensus 159 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~ 237 (254)
+++++|++.||.+++.+|++++.....++++. +..|...+..++.
T Consensus 474 -------------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~--- 519 (546)
T TIGR03222 474 -------------------------------IALEERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFN--- 519 (546)
T ss_pred -------------------------------HHHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhc---
Confidence 46899999999999999999999999999999 9999999999998
Q ss_pred CCChhh---hhhheeccCC
Q 025364 238 SGDFYE---VSNFQILNKH 253 (254)
Q Consensus 238 ~~d~~e---g~~afl~~k~ 253 (254)
++|.+| |+++|++||+
T Consensus 520 ~~d~~e~~~g~~af~ekr~ 538 (546)
T TIGR03222 520 RPNAVGENGALKVYGSGKK 538 (546)
T ss_pred CCcccchhhHHHHHccCCC
Confidence 999999 9999999986
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-32 Score=235.68 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=141.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhc
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALT 93 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~lt 93 (254)
..++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.. +++|++|
T Consensus 82 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~lt 161 (258)
T PRK06190 82 ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLT 161 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHh
Confidence 456678899999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHH
Q 025364 94 GAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEII 173 (254)
Q Consensus 94 g~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (254)
|++++++||+++||||++++++++.+..
T Consensus 162 g~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------------- 189 (258)
T PRK06190 162 GDFLDAADALRAGLVTEVVPHDELLPRA---------------------------------------------------- 189 (258)
T ss_pred CCccCHHHHHHcCCCeEecCHhHHHHHH----------------------------------------------------
Confidence 9999999999999999999877766422
Q ss_pred HHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhh
Q 025364 174 DSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVS 234 (254)
Q Consensus 174 ~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~ 234 (254)
.+++++|++.||.+++.+|++++.....++++.++.|...+...+.
T Consensus 190 ---------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (258)
T PRK06190 190 ---------------RRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNR 235 (258)
T ss_pred ---------------HHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHc
Confidence 2568999999999999999999998888999999999999988886
No 70
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.6e-32 Score=256.20 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEc-cccccHH-HHhhhhCCeEEEe-------CCceEeccccccCCCCCccHHHHHhcc
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILN-GVTMGGG-AGVSIPGTFRVAC-------GKTVFATPETLIGFHPDAGASFYLSHL 82 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 82 (254)
+.....+++..|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+++|++|++|++++|+|+
T Consensus 354 ~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~ 433 (550)
T PRK08184 354 TRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARR 433 (550)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHH
Confidence 344455678899999999999997 9999999 9999999999999 999999999999999999999999987
Q ss_pred -ChHH-HHHH--HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHH
Q 025364 83 -PGHL-GEFL--ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRID 158 (254)
Q Consensus 83 -~g~~-a~~l--~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
+|.. ++++ ++||+++++++|+++||||++++++++.+...
T Consensus 434 ~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~------------------------------------ 477 (550)
T PRK08184 434 FYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVR------------------------------------ 477 (550)
T ss_pred hcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHH------------------------------------
Confidence 6988 8886 59999999999999999999999888774333
Q ss_pred HHHHhcCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHH-HHHHHHHHHHhhhcCC
Q 025364 159 IVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDEC-LVREYRMSLQGVSRLI 237 (254)
Q Consensus 159 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~-l~~e~~~~~~~~~~~~ 237 (254)
+++++|+++||.+++.+|++++.+...+++++ +.+|...+..++.
T Consensus 478 -------------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~--- 523 (550)
T PRK08184 478 -------------------------------IALEERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQ--- 523 (550)
T ss_pred -------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc---
Confidence 46999999999999999999999999999999 9999999999998
Q ss_pred CCChhh---hhhheeccCC
Q 025364 238 SGDFYE---VSNFQILNKH 253 (254)
Q Consensus 238 ~~d~~e---g~~afl~~k~ 253 (254)
++|.+| |+++|++||+
T Consensus 524 ~~d~~e~~~g~~af~ekr~ 542 (550)
T PRK08184 524 RPNAVGEKGALKVYGTGQK 542 (550)
T ss_pred CCcccccchHHHHhccCCC
Confidence 999999 9999999985
No 71
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-32 Score=241.87 Aligned_cols=162 Identities=14% Similarity=0.095 Sum_probs=143.5
Q ss_pred HHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEecccccc-CCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 18 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLI-GFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 18 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
..+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++| ++++ + +.+|.. +++|++||+
T Consensus 103 ~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~-~-~~vG~~~A~~llltg~ 178 (298)
T PRK12478 103 QKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW-L-YRLSLAKVKWHSLTGR 178 (298)
T ss_pred HHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH-H-HHhhHHHHHHHHHcCC
Confidence 35667899999999999999999999999999999999999999999997 9875 2333 3 347887 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
+++|+||+++||||++++++++.....
T Consensus 179 ~i~A~eA~~~GLV~~vv~~~~l~~~a~----------------------------------------------------- 205 (298)
T PRK12478 179 PLTGVQAAEAELINEAVPFERLEARVA----------------------------------------------------- 205 (298)
T ss_pred ccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999887774333
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHhhhcCCCCChh--------hhhh
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF-QTFDECLVREYRMSLQGVSRLISGDFY--------EVSN 246 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~-~~~~~~l~~e~~~~~~~~~~~~~~d~~--------eg~~ 246 (254)
+++++|+..||.+++.+|++++.... .++++++..|...+..++. ++|++ ||++
T Consensus 206 --------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~---s~d~~e~~~~~~~egv~ 268 (298)
T PRK12478 206 --------------EVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRN---TPDALEFIRTAETQGVR 268 (298)
T ss_pred --------------HHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc---ChhHHHHHHHHHHHHHH
Confidence 46899999999999999999998866 4799999999999999887 99997 5999
Q ss_pred heeccCC
Q 025364 247 FQILNKH 253 (254)
Q Consensus 247 afl~~k~ 253 (254)
+|++||+
T Consensus 269 Af~ekR~ 275 (298)
T PRK12478 269 AAVERRD 275 (298)
T ss_pred HHHHhcC
Confidence 9999985
No 72
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.97 E-value=2.9e-31 Score=258.44 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....+....++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~ 162 (715)
T PRK11730 83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADN 162 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHH
Confidence 3456677778888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHh-hccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG-KLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
+++|++||++++++||+++||||++++++++.....++. ++...+...... ......+... +
T Consensus 163 A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~----~~~~~~p~a~-------------~ 225 (715)
T PRK11730 163 ALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR----RQPKLEPLKL-------------S 225 (715)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc----cCcccccccc-------------c
Confidence 999999999999999999999999999888765444442 211110000000 0000000000 0
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHH-HHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGST-LRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEV 244 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~-~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg 244 (254)
.......++. .++. .++.....| +...++++++.+...+++++++.|.+.+..++. |+|++||
T Consensus 226 ~~~~~~~~~~------------~k~~~~~~~~~~~p-a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~d~~eg 289 (715)
T PRK11730 226 KIEAMMSFTT------------AKGMVAQKAGKHYP-APMTAVKTIEAAAGLGRDEALELEAKGFVKLAK---TNVARAL 289 (715)
T ss_pred chhHHHHHHH------------HHHHHHHhhccCCc-cHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence 0000000111 1111 234444555 444888899988888999999999999999998 9999999
Q ss_pred hhheeccCC
Q 025364 245 SNFQILNKH 253 (254)
Q Consensus 245 ~~afl~~k~ 253 (254)
+++|+++|.
T Consensus 290 i~aF~~~~~ 298 (715)
T PRK11730 290 VGIFLNDQY 298 (715)
T ss_pred HHHHHHHHH
Confidence 999998863
No 73
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=6.5e-32 Score=220.08 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=167.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccCh
Q 025364 5 KLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPG 84 (254)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g 84 (254)
++.++..|+..+..++..|..+|.||||+++|.++|||++|+++||+|+|.++++|+++|++++++|+.|++++|+|++|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHh
Q 025364 85 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKC 163 (254)
Q Consensus 85 ~~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (254)
.. +++|++||+.+++.||...||||++|...+--+...
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~----------------------------------------- 220 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY----------------------------------------- 220 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH-----------------------------------------
Confidence 99 999999999999999999999999997643222111
Q ss_pred cCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 025364 164 FGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 243 (254)
Q Consensus 164 ~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e 243 (254)
.-|.+++++|.-+.|.+++.+|..|+.+...++..++..|..-..+.+. ++|..|
T Consensus 221 ----------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~---t~drLe 275 (291)
T KOG1679|consen 221 ----------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIP---TKDRLE 275 (291)
T ss_pred ----------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCc---HHHHHH
Confidence 1123689999999999999999999999999999999999888888887 999999
Q ss_pred hhhheeccCC
Q 025364 244 VSNFQILNKH 253 (254)
Q Consensus 244 g~~afl~~k~ 253 (254)
|+.+|-++|.
T Consensus 276 glaaf~ekr~ 285 (291)
T KOG1679|consen 276 GLAAFKEKRK 285 (291)
T ss_pred HHHHHHhhcC
Confidence 9999999885
No 74
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.97 E-value=1.5e-30 Score=253.32 Aligned_cols=207 Identities=17% Similarity=0.199 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC--ceEeccccccCCCCCccHHHHHhccChHH
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGHL 86 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 86 (254)
...+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~ 162 (708)
T PRK11154 83 AEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 162 (708)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence 3445556677889999999999999999999999999999999999997 49999999999999999999999999998
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
+++|++||++++++||+++||||++++++++.+...++.+.....+..+. +. ....+
T Consensus 163 ~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~--~~--------------------~~~~~ 220 (708)
T PRK11154 163 TALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLP--VR--------------------ERLLE 220 (708)
T ss_pred HHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCC--ch--------------------hhhcc
Confidence 99999999999999999999999999988776544444211000000000 00 00000
Q ss_pred CCCH--HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhh
Q 025364 166 LDTV--EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYE 243 (254)
Q Consensus 166 ~~~~--~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e 243 (254)
.+.. ..+.+.. ...+++-....-.|+..+|++++.+...++++++..|.+.+..++. |+|+++
T Consensus 221 ~~p~~~~~~~~~~------------~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~ 285 (708)
T PRK11154 221 GNPLGRALLFKQA------------RKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAM---TPESAA 285 (708)
T ss_pred cCchhHHHHHHHH------------HHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHH
Confidence 0000 1111111 1112222333446999999999999889999999999999999998 999999
Q ss_pred hhhheeccC
Q 025364 244 VSNFQILNK 252 (254)
Q Consensus 244 g~~afl~~k 252 (254)
|+++|+.++
T Consensus 286 ~~~aF~~~~ 294 (708)
T PRK11154 286 LRSIFFATT 294 (708)
T ss_pred HHHHHHHHH
Confidence 999998765
No 75
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.97 E-value=1.9e-30 Score=220.30 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+.+.+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.++++++|.. +++
T Consensus 83 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 162 (222)
T PRK05869 83 TAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKE 162 (222)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3445567788999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
+++||++++++||.++||+|++++++++.+..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a------------------------------------------------ 194 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAA------------------------------------------------ 194 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHH------------------------------------------------
Confidence 99999999999999999999999887766322
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF 215 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~ 215 (254)
.+++++|+..+|.+++.+|+.+++..+
T Consensus 195 -------------------~~~a~~ia~~~~~a~~~~K~~~~~~~~ 221 (222)
T PRK05869 195 -------------------AAWARRFLDGPPHALAAAKAGISDVYE 221 (222)
T ss_pred -------------------HHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 356999999999999999999997643
No 76
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.97 E-value=6.9e-30 Score=223.94 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=139.4
Q ss_pred HHHHHHHHHHh---hCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 14 RTLYSFIYLLG---THLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 14 ~~~~~l~~~i~---~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
..+++.+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++
T Consensus 105 ~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~e 184 (287)
T PRK08788 105 RACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184 (287)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHH
Confidence 33344444443 79999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++||+.++++||.++||||++++++++.+...
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~----------------------------------------------- 217 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR----------------------------------------------- 217 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887664332
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
+++++|+.. |.+....|+..+.....++++.++.|......+++ ..+.-.+-|+.|+
T Consensus 218 --------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 274 (287)
T PRK08788 218 --------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQ--LEEKDLRTMERLV 274 (287)
T ss_pred --------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhh--cccccHHHHHHHH
Confidence 458888877 88888888888877777899999999877776554 2455555666554
No 77
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=2.2e-30 Score=220.99 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC-ceEeccccccCCCCCccHHHHHhccChHH
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHL 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 86 (254)
....++...++++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|+..++.+.+|..
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~ 151 (229)
T PRK06213 72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS 151 (229)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence 34566777788899999999999999999999999999999999999999 99999999999988887888888888887
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
++++++||++++++||.++||||++++++++....
T Consensus 152 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-------------------------------------------- 187 (229)
T PRK06213 152 AFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARA-------------------------------------------- 187 (229)
T ss_pred HHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHH--------------------------------------------
Confidence 99999999999999999999999999877765422
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHH
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRM 228 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~ 228 (254)
.++++++++.+|.++..+|++++.....++++.++.|.+.
T Consensus 188 -----------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~ 227 (229)
T PRK06213 188 -----------------------QAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAE 227 (229)
T ss_pred -----------------------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 2568999999999999999999988777888888888764
No 78
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.97 E-value=2.6e-29 Score=223.26 Aligned_cols=209 Identities=15% Similarity=0.170 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH
Q 025364 7 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 86 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 86 (254)
+....+.+.+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 104 ~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~ 183 (360)
T TIGR03200 104 QEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE 183 (360)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH
Confidence 34456666677888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChH------------HHHHHHhhcc-CCChH--HHHHHHHHhccccCCCc
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLP------------LIEEELGKLV-TDDPS--VIEACLEKYSDLVYPDK 150 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~------------~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 150 (254)
++++++||++++|+||.++|||++++++.+++ .....+.++. ..++. .+...|..++..
T Consensus 184 rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~----- 258 (360)
T TIGR03200 184 QAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG----- 258 (360)
T ss_pred HHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc-----
Confidence 99999999999999999999999999987773 2233322111 11111 333333333221
Q ss_pred chhHhHHHHHHHhcCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q 025364 151 NSVIHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSL 230 (254)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~ 230 (254)
..++..+-+.++ +++.++....|..+..+++-+|..+...++..-+.-+..+.
T Consensus 259 ---------------~~~~~~l~~~~~------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (360)
T TIGR03200 259 ---------------TIDLSLLDEAVE------------ALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLA 311 (360)
T ss_pred ---------------cchHhHHHHHHH------------HHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHH
Confidence 012222222222 46788888999999999999998777666665555555554
Q ss_pred HhhhcCCCCChhhhhhheecc
Q 025364 231 QGVSRLISGDFYEVSNFQILN 251 (254)
Q Consensus 231 ~~~~~~~~~d~~eg~~afl~~ 251 (254)
--+ .-+..+|++||-++
T Consensus 312 ~~~----~~~~~~~~~~~~~~ 328 (360)
T TIGR03200 312 LNM----MNEARTGFRAFNEG 328 (360)
T ss_pred hhc----ccccchhhHHHhcc
Confidence 333 58899999999984
No 79
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.97 E-value=9.7e-30 Score=247.29 Aligned_cols=206 Identities=19% Similarity=0.204 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC--ceEeccccccCCCCCccHHHHHhccChH
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPGH 85 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g~ 85 (254)
....+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|.
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~ 156 (699)
T TIGR02440 77 EAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV 156 (699)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCH
Confidence 34455666777888999999999999999999999999999999999986 7999999999999999999999999999
Q ss_pred H-HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCC--ChHHHHHHHHHhccccCCCcchhHhHHHHHHH
Q 025364 86 L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTD--DPSVIEACLEKYSDLVYPDKNSVIHRIDIVDK 162 (254)
Q Consensus 86 ~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (254)
. +++|++||+.+++++|.++||||++++++++.....++.+.... .+.... .+
T Consensus 157 ~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~------------------------~~ 212 (699)
T TIGR02440 157 STALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQ------------------------ER 212 (699)
T ss_pred HHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccch------------------------hh
Confidence 8 99999999999999999999999999988877555444221000 000000 00
Q ss_pred hcCC--CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCC
Q 025364 163 CFGL--DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGD 240 (254)
Q Consensus 163 ~~~~--~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d 240 (254)
..+. .....+.+. +.+.+++-....-.|...+++.++.+...+++++++.|.+.+..++. |+|
T Consensus 213 ~~~~~~~a~~~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~ 277 (699)
T TIGR02440 213 LLEGTPLGRALLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVM---TPE 277 (699)
T ss_pred hcccCchhHHHHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---CHH
Confidence 0000 000111111 11222222444567899999999999999999999999999999998 999
Q ss_pred hhhhhhheeccC
Q 025364 241 FYEVSNFQILNK 252 (254)
Q Consensus 241 ~~eg~~afl~~k 252 (254)
+++++++|+..+
T Consensus 278 ~~~~~~~f~~~~ 289 (699)
T TIGR02440 278 SAALRSIFFATT 289 (699)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 80
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.5e-29 Score=221.20 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHh
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLAL 92 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~l 92 (254)
..+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+ ++.+++++++|.. +++|++
T Consensus 105 ~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~lll 182 (288)
T PRK08290 105 EVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLF 182 (288)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999998 54 4567788899988 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEI 172 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 172 (254)
||+.++++||+++||||++++++++.....
T Consensus 183 tG~~i~A~eA~~~GLV~~vv~~~~l~~~a~-------------------------------------------------- 212 (288)
T PRK08290 183 TGDRLTADEAHRLGMVNRVVPRDELEAETL-------------------------------------------------- 212 (288)
T ss_pred cCCCCCHHHHHHCCCccEeeCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999998777664332
Q ss_pred HHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHhh
Q 025364 173 IDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQ-TFDECLVREYRMSLQGV 233 (254)
Q Consensus 173 ~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~-~~~~~l~~e~~~~~~~~ 233 (254)
+++++|++.||.+++.+|++++..... ++++++..|.......+
T Consensus 213 -----------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (288)
T PRK08290 213 -----------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGH 257 (288)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcc
Confidence 569999999999999999999988765 79999999998887766
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.96 E-value=1.8e-28 Score=238.69 Aligned_cols=214 Identities=15% Similarity=0.192 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
....++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~ 162 (714)
T TIGR02437 83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADN 162 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHH
Confidence 3445666677889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhc-cCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKL-VTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
+.+|++||+++++++|+++||||++++++++......+... ....+. ..... .+..... ....+.+++.
T Consensus 163 A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~-------~~~~~-~~~~~~~--~~~~~~~~~~ 232 (714)
T TIGR02437 163 ALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD-------WKAKR-QPKLEPL--KLSKIEAMMS 232 (714)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc-------ccccC-CCCcccc--cccchHHHHH
Confidence 99999999999999999999999999988777555444211 110000 00000 0000000 0000000000
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS 245 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~ 245 (254)
. +++.+...+-......+...+.+.+..+...+++++++.|.+.+.+++. |++.++++
T Consensus 233 -------~------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~---s~~a~~l~ 290 (714)
T TIGR02437 233 -------F------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAK---TSEAKALI 290 (714)
T ss_pred -------H------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Confidence 0 1111222222334444666677888888888999999999999999998 99999999
Q ss_pred hheeccCC
Q 025364 246 NFQILNKH 253 (254)
Q Consensus 246 ~afl~~k~ 253 (254)
+.|+.+|.
T Consensus 291 ~~ff~~r~ 298 (714)
T TIGR02437 291 GLFLNDQY 298 (714)
T ss_pred HHHhhhHh
Confidence 99998763
No 82
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.95 E-value=1.7e-29 Score=207.65 Aligned_cols=177 Identities=17% Similarity=0.237 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL- 86 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~- 86 (254)
..+++....++.+..|.+||||||+++||+|+|||+-|..+||+|+|++++.|+..|+.+|+..|+|...+|++.+|++
T Consensus 107 ~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s 186 (292)
T KOG1681|consen 107 SLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQS 186 (292)
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchH
Confidence 4567778888999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
++++.+|++.++|.||+..||++++.++.+.. +...
T Consensus 187 ~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~~------------------------------------------ 223 (292)
T KOG1681|consen 187 LARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNGA------------------------------------------ 223 (292)
T ss_pred HHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-Hhhh------------------------------------------
Confidence 99999999999999999999999999764322 1122
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS 245 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~ 245 (254)
..+++.|+.++|.++..||+.++++++.+.++.|..=.-.....+. ++|+.+.+
T Consensus 224 -----------------------l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~---s~Dl~~av 277 (292)
T KOG1681|consen 224 -----------------------LPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLL---SDDLVKAV 277 (292)
T ss_pred -----------------------HHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHH---HHHHHHHH
Confidence 2579999999999999999999999999999999887776655555 89999999
Q ss_pred hheeccCC
Q 025364 246 NFQILNKH 253 (254)
Q Consensus 246 ~afl~~k~ 253 (254)
.+.+.+++
T Consensus 278 ~a~m~k~k 285 (292)
T KOG1681|consen 278 MAQMEKLK 285 (292)
T ss_pred HHHhhcCC
Confidence 99998763
No 83
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=4.2e-28 Score=214.88 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFL 90 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l 90 (254)
++....+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|.+|+.+ .+.+++|.. +++|
T Consensus 112 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~---~~~~~vG~~~A~~l 188 (302)
T PRK08272 112 MMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATG---MWAYRLGPQRAKRL 188 (302)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHH---HHHHHhhHHHHHHH
Confidence 456667788899999999999999999999999999999999999999999999986666532 456678888 9999
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVE 170 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
++||++++++||+++||||++++++++.....
T Consensus 189 lltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~------------------------------------------------ 220 (302)
T PRK08272 189 LFTGDCITGAQAAEWGLAVEAVPPEELDERTE------------------------------------------------ 220 (302)
T ss_pred HHcCCccCHHHHHHcCCCceecCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999998877664332
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhccc
Q 025364 171 EIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRF 215 (254)
Q Consensus 171 ~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~ 215 (254)
+++++|++.||.++..+|++++....
T Consensus 221 -------------------~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 221 -------------------RLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred -------------------HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998654
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.95 E-value=1.5e-27 Score=232.79 Aligned_cols=224 Identities=17% Similarity=0.187 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC--ceEeccccccCCCCCccHHHHHhccCh
Q 025364 7 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETLIGFHPDAGASFYLSHLPG 84 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~P~~g~~~~l~r~~g 84 (254)
+....+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 445566677778899999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred HH-HHHHHhcCCCCCHHHHHhcCcchhhccc--CChHHH----HHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHH
Q 025364 85 HL-GEFLALTGAKLNGAEMMACGLATHYSVS--EKLPLI----EEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRI 157 (254)
Q Consensus 85 ~~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~--~~l~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (254)
.. +.+|++||+++++++|+++||||+++++ ++++++ ...+.+........+...+...+. ........
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~-----~~~~~~~~ 242 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINR-----DKGLVHKI 242 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccc-----cccccCcc
Confidence 98 9999999999999999999999999986 222111 111110000000000000000000 00000000
Q ss_pred HHHHHhcCC-CCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcC
Q 025364 158 DIVDKCFGL-DTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRL 236 (254)
Q Consensus 158 ~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~ 236 (254)
. ....+. .....+.+... .++.++ ......|...+.+.+..+...++++++..|.+.+..++.
T Consensus 243 ~--~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~-- 306 (737)
T TIGR02441 243 T--QYVMTNPFVRQQVYKTAE-----------DKVMKQ-TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSM-- 306 (737)
T ss_pred c--hhhcccchhHHHHHHHHH-----------HHHHHh-ccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhC--
Confidence 0 000000 00111111111 122333 223345777788899888888999999999999999998
Q ss_pred CCCChhhhhhheeccC
Q 025364 237 ISGDFYEVSNFQILNK 252 (254)
Q Consensus 237 ~~~d~~eg~~afl~~k 252 (254)
|++.+..++.|+.++
T Consensus 307 -s~~a~al~~~f~~~~ 321 (737)
T TIGR02441 307 -TFESKALIGLFHGQT 321 (737)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 999999999998765
No 85
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=200.87 Aligned_cols=173 Identities=22% Similarity=0.244 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEF 89 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~ 89 (254)
.+...+......+..+|||+||.|||+++|-|+.+.-.||+++|.|+++|..|+..+|..|++++++.+++++|.. +.+
T Consensus 91 ~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E 170 (266)
T KOG0016|consen 91 KFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANE 170 (266)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHH
Confidence 3344444577889999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCH
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTV 169 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
|++.|++++++||...|||+++++.+.+...+.
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~----------------------------------------------- 203 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVL----------------------------------------------- 203 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877764222
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhee
Q 025364 170 EEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQI 249 (254)
Q Consensus 170 ~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl 249 (254)
+.++++++.+|.+++..|++++......+..+.+.|.+.....|. ++|+.+.+..|+
T Consensus 204 --------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~---s~e~~~~~~~~~ 260 (266)
T KOG0016|consen 204 --------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWV---SAECLARFKQYL 260 (266)
T ss_pred --------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcc---ChHHHHHHHHHh
Confidence 457888999999999999999999999999999999999999998 999999999999
Q ss_pred ccCC
Q 025364 250 LNKH 253 (254)
Q Consensus 250 ~~k~ 253 (254)
.+++
T Consensus 261 ~~~~ 264 (266)
T KOG0016|consen 261 SKKR 264 (266)
T ss_pred cccc
Confidence 9875
No 86
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.94 E-value=1.4e-26 Score=198.66 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEe-CCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVAC-GKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
..+...+.+++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+.+++.++++.+|.. +
T Consensus 77 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a 156 (239)
T PLN02267 77 HLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAA 156 (239)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHH
Confidence 3455667778899999999999999999999999999999999998 5689999999999974444577888888877 7
Q ss_pred -HHHHhcCCCCCHHHHHhcCcchhhccc-CChH
Q 025364 88 -EFLALTGAKLNGAEMMACGLATHYSVS-EKLP 118 (254)
Q Consensus 88 -~~l~ltg~~i~a~ea~~~Glv~~vv~~-~~l~ 118 (254)
+++++||++++++||+++||||+++++ +++.
T Consensus 157 ~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~ 189 (239)
T PLN02267 157 RRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETV 189 (239)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcceecCCHHHHH
Confidence 689999999999999999999999974 4454
No 87
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.92 E-value=1.8e-24 Score=179.51 Aligned_cols=114 Identities=28% Similarity=0.462 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-H
Q 025364 9 CKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-G 87 (254)
Q Consensus 9 ~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a 87 (254)
..++++.+++++..+..+|||||+++||+|+|+|++++++||+||++++++|++||+++|++|+.|++.++++++|.. +
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a 154 (195)
T cd06558 75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARA 154 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999887 9
Q ss_pred HHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHH
Q 025364 88 EFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEE 122 (254)
Q Consensus 88 ~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~ 122 (254)
.+++++|++++++||+++||++++++.+++.+...
T Consensus 155 ~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~ 189 (195)
T cd06558 155 RELLLTGRRISAEEALELGLVDEVVPDEELLAAAL 189 (195)
T ss_pred HHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHH
Confidence 99999999999999999999999999876664433
No 88
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.91 E-value=5.9e-24 Score=172.39 Aligned_cols=175 Identities=17% Similarity=0.179 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH
Q 025364 7 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL 86 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~ 86 (254)
+.-...|..+-+++.-|.++|+|||+-|||.+-.+|+.|+..||++||+++++|+.|...+|+|...-+ .-+.|.++..
T Consensus 105 d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRk 183 (287)
T KOG1682|consen 105 DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRK 183 (287)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchh
Confidence 445567788889999999999999999999999999999999999999999999999999999743212 2467777777
Q ss_pred -HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcC
Q 025364 87 -GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFG 165 (254)
Q Consensus 87 -a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (254)
+.||++||.+|++++|+..||++++||+++++....
T Consensus 184 va~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~------------------------------------------- 220 (287)
T KOG1682|consen 184 VAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIE------------------------------------------- 220 (287)
T ss_pred HHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHH-------------------------------------------
Confidence 999999999999999999999999999998884332
Q ss_pred CCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhh
Q 025364 166 LDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVS 245 (254)
Q Consensus 166 ~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~ 245 (254)
++..+|...|+..+.+.|+.+-....++-.++...-.+.+-.-++ -.|++|||
T Consensus 221 ------------------------~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~q---l~d~kegi 273 (287)
T KOG1682|consen 221 ------------------------EITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQ---LGDTKEGI 273 (287)
T ss_pred ------------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc---ccchHHHH
Confidence 467888889999999999999888888888999888888877777 89999999
Q ss_pred hheeccC
Q 025364 246 NFQILNK 252 (254)
Q Consensus 246 ~afl~~k 252 (254)
.+|+++|
T Consensus 274 asf~~kr 280 (287)
T KOG1682|consen 274 ASFFEKR 280 (287)
T ss_pred HHHhccC
Confidence 9999997
No 89
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.89 E-value=4.6e-23 Score=194.09 Aligned_cols=107 Identities=13% Similarity=0.136 Sum_probs=95.9
Q ss_pred HHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC--ceEeccccc-cCCCCCccHHHHHh--ccChHH-HHHHH
Q 025364 18 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFHPDAGASFYLS--HLPGHL-GEFLA 91 (254)
Q Consensus 18 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~P~~g~~~~l~--r~~g~~-a~~l~ 91 (254)
.+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|++|+..++. +..|.. +++|+
T Consensus 110 ~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~ll 189 (546)
T TIGR03222 110 GIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFC 189 (546)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHH
Confidence 3455778899999999999999999999999999999996 799999997 99999999998887 577887 99999
Q ss_pred hcCCCCCHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 92 LTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
+||++++++||+++||||++++++++.+...++
T Consensus 190 ltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l 222 (546)
T TIGR03222 190 TIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222 (546)
T ss_pred HcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence 999999999999999999999988777544433
No 90
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.89 E-value=1e-23 Score=172.47 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=138.0
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHH-HHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHL-GEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~-a~~l~ltg~ 95 (254)
-++-+.|.++||||||.|+|+++|||-.|-+.||+.||++.++|+..-.++|-|-++.++-+|.|++|.. ++++.+.++
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR 185 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCR 185 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhh
Confidence 3466789999999999999999999999999999999999999999999999998888888999999998 999999999
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhcCCCCHHHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCFGLDTVEEIIDS 175 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (254)
..+|++|+++|+||.|||-++++... +
T Consensus 186 ~Y~A~eal~MGlVN~Vvp~~~LE~e~--v--------------------------------------------------- 212 (282)
T COG0447 186 QYDAEEALDMGLVNTVVPHADLEKET--V--------------------------------------------------- 212 (282)
T ss_pred hccHHHHHhcCceeeeccHHHHHHHH--H---------------------------------------------------
Confidence 99999999999999999988887422 2
Q ss_pred HHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhheeccCC
Q 025364 176 LESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 176 l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~afl~~k~ 253 (254)
.| ++.|.++||.|++..|..+|-..+ .+. -..|..--+-++.+ .+++.+||-.||++||+
T Consensus 213 ----------~W----~~E~l~kSP~AlR~LK~Afnad~D-Gla--G~q~~ag~at~L~Y-mTdEa~EGr~AF~eKR~ 272 (282)
T COG0447 213 ----------QW----AREMLAKSPTALRMLKAAFNADCD-GLA--GLQELAGNATLLYY-MTDEAQEGRDAFLEKRK 272 (282)
T ss_pred ----------HH----HHHHHhcChHHHHHHHHHhcCCCc-hhh--HHHHhcccceEEEE-echhhhhhHHHHhhccC
Confidence 34 677888999999999999884332 111 11222222223323 39999999999999985
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.89 E-value=8e-23 Score=192.97 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=94.5
Q ss_pred HHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC--ceEeccccc-cCCCCCccHHHHHh--ccChHH-HHHHHh
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK--TVFATPETL-IGFHPDAGASFYLS--HLPGHL-GEFLAL 92 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~P~~g~~~~l~--r~~g~~-a~~l~l 92 (254)
+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++|++|++.++. +.+|.. +.+|++
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~lll 194 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCT 194 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHH
Confidence 345678899999999999999999999999999999987 899999997 99999999998888 678887 999999
Q ss_pred cCCCCCHHHHHhcCcchhhcccCChHHHHH
Q 025364 93 TGAKLNGAEMMACGLATHYSVSEKLPLIEE 122 (254)
Q Consensus 93 tg~~i~a~ea~~~Glv~~vv~~~~l~~~~~ 122 (254)
||+.++++||+++||||++++++++.+...
T Consensus 195 tG~~i~AeeA~~~GLVd~vv~~d~l~~~a~ 224 (550)
T PRK08184 195 IEEGVRGKRAVDWRLVDEVVKPSKFDAKVA 224 (550)
T ss_pred hCCcccHHHHHHcCCccEeeCHHHHHHHHH
Confidence 999999999999999999999887765443
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.69 E-value=8.4e-17 Score=133.17 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=84.4
Q ss_pred HHHHHHHhhCCCcEEEEEc---cccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCc--------------cHHHHH
Q 025364 17 YSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA--------------GASFYL 79 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~--------------g~~~~l 79 (254)
..++..|..+|||||+++| |+|.|||+.|+++||+++++++++|+.+++..|..+.. +....+
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSL 127 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3556677889999999999 99999999999999999999999999999985554432 234467
Q ss_pred hccChH--H-HHHHHhcCCCCCHHHHHhcCcchhhcccC
Q 025364 80 SHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVSE 115 (254)
Q Consensus 80 ~r~~g~--~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~ 115 (254)
.+..|. . +..++++|+.++++||+++||+|++++++
T Consensus 128 ~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 128 AELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred HHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 777675 4 88999999999999999999999999764
No 93
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.67 E-value=2.6e-16 Score=120.48 Aligned_cols=93 Identities=39% Similarity=0.724 Sum_probs=83.6
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhh
Q 025364 154 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGV 233 (254)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~ 233 (254)
..+...|++||+.+++++|++.|+.. ..+|+.++++.|.++||.|+++|+++++++.+.+++++++.|+++..+++
T Consensus 3 ~~~~~~I~~~F~~~s~~eI~~~L~~~----~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~ 78 (118)
T PF13766_consen 3 AEHLEAIDRCFSADSVEEIIEALEAD----GDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCM 78 (118)
T ss_dssp HHCHHHHHHHTTSSSHHHHHHHHHHH----S-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHcc----CcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999983 78999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChhhhhhheeccCC
Q 025364 234 SRLISGDFYEVSNFQILNKH 253 (254)
Q Consensus 234 ~~~~~~d~~eg~~afl~~k~ 253 (254)
. .+||.|||+|.|+||+
T Consensus 79 ~---~~DF~EGVRA~LIDKd 95 (118)
T PF13766_consen 79 R---HPDFAEGVRALLIDKD 95 (118)
T ss_dssp C---CSCHHHHHHHHTTS--
T ss_pred c---cchHHHHHHHHHhcCC
Confidence 8 8999999999999986
No 94
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.55 E-value=7.1e-15 Score=120.59 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHH--------HHhccCh--
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASF--------YLSHLPG-- 84 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~--------~l~r~~g-- 84 (254)
...+++..+..++|||||++||.|.|||+.|+++||+++++++++|+.+.+..+..+...... .+++..|
T Consensus 59 ~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~ 138 (177)
T cd07014 59 VIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHST 138 (177)
T ss_pred HHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445677788889999999999999999999999999999999999999988777433222222 3444444
Q ss_pred HH-HHHHHhcCCCCCHHHHHhcCcchhhcccCChH
Q 025364 85 HL-GEFLALTGAKLNGAEMMACGLATHYSVSEKLP 118 (254)
Q Consensus 85 ~~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~ 118 (254)
.. ..+++..|..+++++|++.||||++.+.+++.
T Consensus 139 ~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~ 173 (177)
T cd07014 139 PEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAV 173 (177)
T ss_pred HHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHH
Confidence 44 77888999999999999999999999765544
No 95
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.44 E-value=6.4e-13 Score=107.18 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccH---------------HHHH
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA---------------SFYL 79 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~---------------~~~l 79 (254)
....+...|..++||||+.++|.|.|+|+.++++||.|+++++++|+++....|..+.... ...+
T Consensus 46 ~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 125 (160)
T cd07016 46 AGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAY 125 (160)
T ss_pred HHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999999999999999999998887776544321 2225
Q ss_pred hccCh--HH-HHHHHhcCCCCCHHHHHhcCcchhh
Q 025364 80 SHLPG--HL-GEFLALTGAKLNGAEMMACGLATHY 111 (254)
Q Consensus 80 ~r~~g--~~-a~~l~ltg~~i~a~ea~~~Glv~~v 111 (254)
.+..| .. ...++.++..++++||+++||+|++
T Consensus 126 ~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 126 AEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 55555 34 6777777778999999999999975
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.14 E-value=1.7e-10 Score=92.93 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=73.6
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCcc------HHHHH----hccC--
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAG------ASFYL----SHLP-- 83 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g------~~~~l----~r~~-- 83 (254)
...+...+..++||||++++|.|.++|..|+++||.|++.+++.|+++....+.....+ ....+ .++.
T Consensus 46 ~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (161)
T cd00394 46 GMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISL 125 (161)
T ss_pred HHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888999999999999999999999999999999999999988876643220 00111 1111
Q ss_pred -------hHH-HHHHHhcCCCCCHHHHHhcCcchhh
Q 025364 84 -------GHL-GEFLALTGAKLNGAEMMACGLATHY 111 (254)
Q Consensus 84 -------g~~-a~~l~ltg~~i~a~ea~~~Glv~~v 111 (254)
... ...++.+|..++++||++.||||++
T Consensus 126 v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 126 VAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 122 4566778999999999999999975
No 97
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.96 E-value=2.3e-09 Score=87.95 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccH--------HHH------
Q 025364 13 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGA--------SFY------ 78 (254)
Q Consensus 13 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~--------~~~------ 78 (254)
+.....+...|..+++|||++|+|.|.++|..++++||++++.+++.|+.++.- +..|. +.+
T Consensus 44 v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~ 119 (178)
T cd07021 44 VDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRA 119 (178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHH
Confidence 345566788889999999999999999999999999999999999999987544 22222 111
Q ss_pred HhccChH--H-HHHHHhcC-------------CCCCHHHHHhcCcchhhcc
Q 025364 79 LSHLPGH--L-GEFLALTG-------------AKLNGAEMMACGLATHYSV 113 (254)
Q Consensus 79 l~r~~g~--~-a~~l~ltg-------------~~i~a~ea~~~Glv~~vv~ 113 (254)
+...-|+ . +..|+-.. ..++++||++.|++|.+.+
T Consensus 120 ~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~ 170 (178)
T cd07021 120 AAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAG 170 (178)
T ss_pred HHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEEC
Confidence 2212222 2 44554443 2799999999999999875
No 98
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.95 E-value=6.9e-10 Score=93.56 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEe
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 61 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~ 61 (254)
.+++.+..+..++|||||+++|.|.|+|+.|+++||++++++++.++
T Consensus 58 ~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 58 VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 44556777888999999999999999999999999999999998886
No 99
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.90 E-value=3.8e-09 Score=101.43 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceE------eccc------cccCCCCCccHHHHHhc
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVF------ATPE------TLIGFHPDAGASFYLSH 81 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~P~~g~~~~l~r 81 (254)
+..++.+..+...+||||+.++|.|.+||..++++||.++|++++.+ +.+. .++|+.|+...+..+..
T Consensus 365 e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~ 444 (584)
T TIGR00705 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELAN 444 (584)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCC
Confidence 34445556666778999999999999999999999999999999876 6663 58999887655543321
Q ss_pred ----------------------------------cChHHHHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHh
Q 025364 82 ----------------------------------LPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELG 125 (254)
Q Consensus 82 ----------------------------------~~g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~ 125 (254)
-........+.+|+.+++++|+++||||++. .+++..+...
T Consensus 445 ~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~~~Ai~~a~ 519 (584)
T TIGR00705 445 VSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GLDEAVAKAA 519 (584)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CHHHHHHHHH
Confidence 1122255678899999999999999999995 4444444443
No 100
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.81 E-value=1.5e-08 Score=85.66 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=38.0
Q ss_pred HHHHHhhC--CCcEEEEEccccccHHHHhhhhCCeEEEeCCceEecc
Q 025364 19 FIYLLGTH--LKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 63 (254)
Q Consensus 19 l~~~i~~~--~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~p 63 (254)
+...|..+ +|||||+++|.|.|||..++++||.+++++++.|+..
T Consensus 63 l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 63 LADAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred HHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 34444455 4999999999999999999999999999999987543
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.73 E-value=3.9e-08 Score=82.65 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhCC--CcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccc------------cCCCCC--------
Q 025364 15 TLYSFIYLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETL------------IGFHPD-------- 72 (254)
Q Consensus 15 ~~~~l~~~i~~~~--kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~P~-------- 72 (254)
....+...|..++ |||||+++|.|.|+|..|+++||.+++++++.++.--+. +|+-+.
T Consensus 47 ~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K 126 (207)
T TIGR00706 47 ASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYK 126 (207)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCc
Confidence 4455677777777 999999999999999999999999999999876642222 233210
Q ss_pred ----c------cHHHHH---------------h--ccChHHHHHHHhcCCCCCHHHHHhcCcchhhcccCChH
Q 025364 73 ----A------GASFYL---------------S--HLPGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 118 (254)
Q Consensus 73 ----~------g~~~~l---------------~--r~~g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~ 118 (254)
. ..-..+ . |-.......-++.|..+++++|++.||||.+...+++.
T Consensus 127 ~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 127 DIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence 0 000011 1 11112212234788999999999999999997655544
No 102
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.67 E-value=6.8e-08 Score=81.19 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEecccc------------ccCCCCCccH-------
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPET------------LIGFHPDAGA------- 75 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~P~~g~------- 75 (254)
.+++.+..+..++|||||+++|.|.|+|..|+++||.+++++++.|+..-+ ++|+-+..-.
T Consensus 54 ~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~ 133 (208)
T cd07023 54 EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDK 133 (208)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccC
Confidence 445667778888999999999999999999999999999999998753211 2333332111
Q ss_pred -----------HHHHhccCh-----------------HHHHHHHhcCCCCCHHHHHhcCcchhhcccC
Q 025364 76 -----------SFYLSHLPG-----------------HLGEFLALTGAKLNGAEMMACGLATHYSVSE 115 (254)
Q Consensus 76 -----------~~~l~r~~g-----------------~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~ 115 (254)
...+..+.. ..-..-++.|..+++++|++.||||.+...+
T Consensus 134 ~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~ 201 (208)
T cd07023 134 GSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLD 201 (208)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHH
Confidence 011111111 1112235678889999999999999997533
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.38 E-value=2.8e-06 Score=69.25 Aligned_cols=99 Identities=9% Similarity=0.181 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCcEEEEEc---cccccHHHHhhhhCCeEEEeCCceEeccccccCCCCC----c----cHHHHHhc---
Q 025364 16 LYSFIYLLGTHLKPHVAILN---GVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPD----A----GASFYLSH--- 81 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~----~----g~~~~l~r--- 81 (254)
...+...|...++||++.|+ |.|..+|..++++||.+++.+++.++......|..++ . -.+..+.+
T Consensus 47 ~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~ 126 (172)
T cd07015 47 AGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKS 126 (172)
T ss_pred HHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHH
Confidence 34556677778999999999 9999999999999999999999999988875443220 0 01122222
Q ss_pred ---cCh---HHHHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 82 ---LPG---HLGEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 82 ---~~g---~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
.-| ..+..++-....++++||++.|++|.++++
T Consensus 127 ~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 122 126677777888999999999999999864
No 104
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.35 E-value=1.9e-06 Score=72.01 Aligned_cols=99 Identities=17% Similarity=0.054 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEeccccccCCCCCccH----H-----------HH
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA----S-----------FY 78 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~P~~g~----~-----------~~ 78 (254)
...+...|...+.||++.+.|.|.++|..|+++++ .|++.+++++++....-|......- + ..
T Consensus 78 g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T PRK00277 78 GLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEI 157 (200)
T ss_pred HHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 34456667778899999999999999999999753 4666666666665543222100000 0 11
Q ss_pred HhccChH---HHHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 79 LSHLPGH---LGEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 79 l~r~~g~---~a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
+...-|. ....++-.+..++++||++.||||+++++
T Consensus 158 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 158 LAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 1211121 24445556778999999999999999864
No 105
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.27 E-value=3.1e-06 Score=71.87 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccc
Q 025364 13 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPE 64 (254)
Q Consensus 13 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe 64 (254)
.+.+++.+..+...+|||||+++| +.+||..|+++||.+++.+++.++..-
T Consensus 64 ~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 64 LEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeec
Confidence 345566667777789999999998 889999999999999999999998743
No 106
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.25 E-value=5.7e-06 Score=71.51 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH--HHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--LGEF 89 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~a~~ 89 (254)
....+.++...+...++|+|+++-|.+.|||......||++++.+++.++ +.++-|++..+.+-... .+.+
T Consensus 121 ~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~-------v~~pe~~a~il~~~~~~a~~aa~ 193 (256)
T PRK12319 121 QGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYA-------VLSPEGFASILWKDGSRATEAAE 193 (256)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEE-------EcCHHHHHHHHhcCcccHHHHHH
Confidence 44566777888889999999999999999988888899999998888655 55555666666554322 2333
Q ss_pred HHhcCCCCCHHHHHhcCcchhhcccC
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVSE 115 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~~ 115 (254)
. ..+++.++.+.|+||+|+++.
T Consensus 194 ~----~~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 194 L----MKITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred H----cCCCHHHHHHCCCCcEecCCC
Confidence 3 378999999999999999753
No 107
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.24 E-value=8.2e-06 Score=72.35 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 91 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ 91 (254)
....+.++...+....+|+|++|-|.+-|||+-....||++++.+++.++ +.++-|++..+.+-.... .. +
T Consensus 177 ~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~s-------VisPEg~a~Il~~d~~~a-~~-a 247 (322)
T CHL00198 177 QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYT-------VATPEACAAILWKDSKKS-LD-A 247 (322)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEE-------ecCHHHHHHHHhcchhhH-HH-H
Confidence 34556667777889999999999999988887666669999999988665 555666666776654432 22 2
Q ss_pred hcCCCCCHHHHHhcCcchhhccc
Q 025364 92 LTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
....++++++++++|+||.|++.
T Consensus 248 A~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 248 AEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred HHHcCCCHHHHHhCCCCeEeccC
Confidence 34479999999999999999974
No 108
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.24 E-value=7.7e-06 Score=66.09 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEeccccccCCCCCccHHH---------------
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF--------------- 77 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~P~~g~~~--------------- 77 (254)
....+...|..+++||++.+.|.|.++|.-++++|| .|++.+++++++....-|......-..
T Consensus 46 ~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~ 125 (162)
T cd07013 46 AGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVS 125 (162)
T ss_pred HHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344567777889999999999999999999999999 688888888887664433221100000
Q ss_pred HHhccCh--HH-HHHHHhcCCCCCHHHHHhcCcchhh
Q 025364 78 YLSHLPG--HL-GEFLALTGAKLNGAEMMACGLATHY 111 (254)
Q Consensus 78 ~l~r~~g--~~-a~~l~ltg~~i~a~ea~~~Glv~~v 111 (254)
.+.+.-| .. ...++-.+..++++||+++||||++
T Consensus 126 ~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 126 AYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 1111112 12 4445566667799999999999975
No 109
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.16 E-value=9.9e-06 Score=68.09 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEecccccc-CCCCCccHH---------------
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLI-GFHPDAGAS--------------- 76 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~P~~g~~--------------- 76 (254)
....+...|..++.||++.+.|.|.+.|..|+++|| .|++.++++|++.+... |.. .|..
T Consensus 81 ~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~ 158 (207)
T PRK12553 81 AGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRE 158 (207)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHH
Confidence 344566777888999999999999999999999999 59999999999988764 211 1111
Q ss_pred ---HHHhccChH--H-HHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 77 ---FYLSHLPGH--L-GEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 77 ---~~l~r~~g~--~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
..+...-|. . ...++-.+..++|+||++.||||+++++
T Consensus 159 ~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 159 RLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 112222221 2 4556667888999999999999999864
No 110
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.12 E-value=1.6e-05 Score=76.63 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHH
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEF 89 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~ 89 (254)
......+.+....+....+|+|++|-|.|.|||+.....||++++.+++.+ ++.++-|++..+.+-.... ..
T Consensus 263 ~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~-------sVisPEgaAsILwkd~~~A-~e 334 (762)
T PLN03229 263 LGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVF-------YVASPEACAAILWKSAKAA-PK 334 (762)
T ss_pred HhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeE-------EecCHHHHHHHHhcCcccH-HH
Confidence 345566777888888999999999999998888887778999998888754 4555666666776654432 11
Q ss_pred HHhcCCCCCHHHHHhcCcchhhccc
Q 025364 90 LALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 90 l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
+.....|++++++++|+||.|++.
T Consensus 335 -AAe~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 335 -AAEKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred -HHHHcCCCHHHHHhCCCCeeeccC
Confidence 234479999999999999999974
No 111
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.10 E-value=2e-05 Score=65.71 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCccHH----HHHhccChHH--
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS----FYLSHLPGHL-- 86 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g~~----~~l~r~~g~~-- 86 (254)
....+...|..++.||++.+.|.|...|..++++||- |++.++++|.+....-|+.....-. ..+.+.....
T Consensus 69 ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~ 148 (197)
T PRK14512 69 AGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELND 148 (197)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777899999999999999999999999985 8999999998887654432111100 0111111111
Q ss_pred ------------HHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 87 ------------GEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 87 ------------a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
...++-....++++||+++||||+|++.
T Consensus 149 ~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 149 IIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred HHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 2333334467999999999999999964
No 112
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.09 E-value=2.3e-05 Score=69.44 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH--HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--LGE 88 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~a~ 88 (254)
.....+.++...+....+|+|++|-|.+-|||..-...||++++.+++.++ ++++-|++..+.+-... .+.
T Consensus 173 G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aa 245 (316)
T TIGR00513 173 GQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAA 245 (316)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHH
Confidence 345566777888889999999999999977777655569999888887554 66666667677664322 222
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
. ...+++.++.+.|+||.|++.
T Consensus 246 e----~~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 246 E----AMKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred H----HccCCHHHHHHCCCCeEeccC
Confidence 2 267789999999999999974
No 113
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.05 E-value=3.1e-05 Score=70.52 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH--HHH
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--LGE 88 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~a~ 88 (254)
.......++++.+....+|+|++|-|.+-+||.....+||++++.+++.+ ++.++-|++..+.+-... .+.
T Consensus 243 Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~y-------sVisPEgaAsILwkd~~~A~eAA 315 (431)
T PLN03230 243 GQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVY-------YVASPEACAAILWKSAAAAPKAA 315 (431)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEE-------EecCHHHHHHHHhccccchHHHH
Confidence 34556677788889999999999999997777655557899998888754 455555566666654322 133
Q ss_pred HHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 89 FLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 89 ~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
. ...+++.++.+.|+||.|++.
T Consensus 316 e----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 316 E----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred H----HcCCCHHHHHhCCCCeEeccC
Confidence 3 459999999999999999974
No 114
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.04 E-value=2.6e-05 Score=69.18 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHH
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLA 91 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ 91 (254)
..+...+++..+....+|+|++|-|.+.|||..-...||++++.+++. ++++++-|++..+.+-... +...
T Consensus 174 ~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~-------~svisPEg~a~Il~~~~~~-a~~a- 244 (319)
T PRK05724 174 QSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYST-------YSVISPEGCASILWKDASK-APEA- 244 (319)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCce-------EeecCHHHHHHHHhcCchh-HHHH-
Confidence 456667788888999999999999999777775555699988887775 4566666777777765433 2222
Q ss_pred hcCCCCCHHHHHhcCcchhhccc
Q 025364 92 LTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
-....+++.++.+.|+||.|++.
T Consensus 245 ae~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 245 AEAMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred HHHcCCCHHHHHHCCCceEeccC
Confidence 22567999999999999999974
No 115
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.01 E-value=1.5e-05 Score=64.99 Aligned_cols=95 Identities=19% Similarity=0.080 Sum_probs=69.5
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEeccccccCCCCCccH---------------HHHH
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGA---------------SFYL 79 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~P~~g~---------------~~~l 79 (254)
..+...|..++.||++.+.|.|.++|..+++++| .|++.++++|.+.+...|..-...- ...+
T Consensus 57 ~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 136 (171)
T cd07017 57 LAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEIL 136 (171)
T ss_pred HHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999 7999999999999987765322100 0001
Q ss_pred hccCh--HH-HHHHHhcCCCCCHHHHHhcCcchhh
Q 025364 80 SHLPG--HL-GEFLALTGAKLNGAEMMACGLATHY 111 (254)
Q Consensus 80 ~r~~g--~~-a~~l~ltg~~i~a~ea~~~Glv~~v 111 (254)
...-| .. ...++-.+..++++||+++||+|+|
T Consensus 137 ~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 137 AKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 11111 12 3444557778999999999999975
No 116
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.98 E-value=1.5e-05 Score=65.42 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCccHH----HHHhccChH---
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGAS----FYLSHLPGH--- 85 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g~~----~~l~r~~g~--- 85 (254)
....+...|..++.||++.+.|.|.+.|..++++|+. |++.+++.|++.+...+......-. ..+.+....
T Consensus 62 ~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~ 141 (182)
T PF00574_consen 62 AGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIAN 141 (182)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999999999999999 8999999999999987764311110 111111111
Q ss_pred ----------H-HHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 86 ----------L-GEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 86 ----------~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
. ...++-....++|+||+++||||+|+..
T Consensus 142 ~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 142 IYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1 2333334455899999999999999753
No 117
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.96 E-value=5.5e-05 Score=63.15 Aligned_cols=100 Identities=14% Similarity=-0.002 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEeccccccCCCCCccHHH------HHhccChH-
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGASF------YLSHLPGH- 85 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~P~~g~~~------~l~r~~g~- 85 (254)
....+...+..++.||.+.+-|.|.+.|..|++++| -|++.++++|.+.....|+.-+- ++- .+.++...
T Consensus 76 ~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~ 154 (200)
T CHL00028 76 SGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETI 154 (200)
T ss_pred hHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999999999999999 69999999999999876632111 111 11111111
Q ss_pred ------------H-HHHHHhcCCCCCHHHHHhcCcchhhcccC
Q 025364 86 ------------L-GEFLALTGAKLNGAEMMACGLATHYSVSE 115 (254)
Q Consensus 86 ------------~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~ 115 (254)
. ...++-....++|+||+++||||+|+++.
T Consensus 155 ~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 155 TRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 1 33444555669999999999999998653
No 118
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.91 E-value=8e-05 Score=63.00 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCccH----HHHHhc--------
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGA----SFYLSH-------- 81 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g~----~~~l~r-------- 81 (254)
...+...+..++.||.+.+-|.|.+.|..|++++|. |++.+++++.+....-|......- ..-+.+
T Consensus 101 GlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~i 180 (221)
T PRK14514 101 GLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTI 180 (221)
T ss_pred HHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999999999996 899999999999986554322110 011111
Q ss_pred ---cChH---HHHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 82 ---LPGH---LGEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 82 ---~~g~---~a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
.-|. ....++-....++|+||+++||||+|++.
T Consensus 181 ya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 181 IADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 1121 13344455667999999999999999863
No 119
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.87 E-value=8.9e-05 Score=61.54 Aligned_cols=99 Identities=15% Similarity=0.005 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCC--eEEEeCCceEeccccccCCCCCccHH----HH----------
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGT--FRVACGKTVFATPETLIGFHPDAGAS----FY---------- 78 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~P~~g~~----~~---------- 78 (254)
....+...+..++.||.+.+-|.|...|..+++++| .|++.++++|++.+..-|......-. ..
T Consensus 72 ~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~ 151 (191)
T TIGR00493 72 AGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLND 151 (191)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHH
Confidence 344455667778889999999999999999999776 59999999999988765432211111 11
Q ss_pred -HhccCh---HHHHHHHhcCCCCCHHHHHhcCcchhhcc
Q 025364 79 -LSHLPG---HLGEFLALTGAKLNGAEMMACGLATHYSV 113 (254)
Q Consensus 79 -l~r~~g---~~a~~l~ltg~~i~a~ea~~~Glv~~vv~ 113 (254)
+...-| .....++-.+..++++||+++||||+++.
T Consensus 152 ~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 152 ILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 111112 12444556667899999999999999874
No 120
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.78 E-value=0.00021 Score=59.71 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCccHHHH------Hhcc----
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY------LSHL---- 82 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g~~~~------l~r~---- 82 (254)
....+...+..++.||.+.+-|.|.+.|..|++++|- |++.+++++.++...-|+. +.++-. +-+.
T Consensus 73 ~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l 150 (201)
T PRK14513 73 AGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTL 150 (201)
T ss_pred hHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999999996 9999999999999876652 111111 1111
Q ss_pred -------ChH---HHHHHHhcCCCCCHHHHHhcCcchhhcccCC
Q 025364 83 -------PGH---LGEFLALTGAKLNGAEMMACGLATHYSVSEK 116 (254)
Q Consensus 83 -------~g~---~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~ 116 (254)
-|. ....++-....++|+||+++||||+|+++..
T Consensus 151 ~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 151 VDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 111 1233334445699999999999999997644
No 121
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.65 E-value=0.00028 Score=58.76 Aligned_cols=101 Identities=13% Similarity=-0.004 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCcc-H---HHHHhccChHH--
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAG-A---SFYLSHLPGHL-- 86 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g-~---~~~l~r~~g~~-- 86 (254)
....+...+..++.||.+.+-|.|.+.|..|++++|- |++.+++++.+....-|..-... . ...+.+.....
T Consensus 71 ~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~ 150 (196)
T PRK12551 71 DGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNT 150 (196)
T ss_pred hHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHH
Confidence 3456677778899999999999999999999999985 89999999999987644321110 0 11111111111
Q ss_pred ------------HHHHHhcCCCCCHHHHHhcCcchhhcccC
Q 025364 87 ------------GEFLALTGAKLNGAEMMACGLATHYSVSE 115 (254)
Q Consensus 87 ------------a~~l~ltg~~i~a~ea~~~Glv~~vv~~~ 115 (254)
...++-....++|+||++.||||++++..
T Consensus 151 ~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 151 ELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 33344444569999999999999998754
No 122
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.64 E-value=0.00094 Score=57.22 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCC---CcEEEEEccccccHHHH-hhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhcc
Q 025364 7 EECKDFFRTLYSFIYLLGTHL---KPHVAILNGVTMGGGAG-VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL 82 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~---kPvIa~v~G~a~GgG~~-lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~ 82 (254)
++.....+..-++.+.+.... .|+|+.|-|.+.|||+. +.+.+|.++| +|...++..++-+++..+.+-
T Consensus 84 aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~A-------lp~A~i~vm~~e~aa~I~~~~ 156 (238)
T TIGR03134 84 EELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIA-------LPGAMVHVMDLESMARVTKRS 156 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEE-------cCCcEEEecCHHHHHHHHccC
Confidence 344444555566666666555 99999999999998753 3334666555 466677788777777777765
Q ss_pred ChHHHHHHHhc--CCCCCHHHHHhcCcchhhcccCCh
Q 025364 83 PGHLGEFLALT--GAKLNGAEMMACGLATHYSVSEKL 117 (254)
Q Consensus 83 ~g~~a~~l~lt--g~~i~a~ea~~~Glv~~vv~~~~l 117 (254)
.... .++.-+ -...++..+.++|+||.++++.+-
T Consensus 157 ~~~~-~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 157 VEEL-EALAKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HhHH-HHHHHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 5432 222211 134677789999999999986554
No 123
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.63 E-value=0.00023 Score=62.06 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHhhCC--CcEEEEEccc--cccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH--H-HHHH
Q 025364 18 SFIYLLGTHL--KPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH--L-GEFL 90 (254)
Q Consensus 18 ~l~~~i~~~~--kPvIa~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~--~-a~~l 90 (254)
++++.+..++ +|+|+++-|. |.||+..++..||++|+++++++++. +........|. . ...-
T Consensus 125 ~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~ 193 (274)
T TIGR03133 125 EIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDR 193 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHh
Confidence 3444443333 9999999999 89999999999999999998766641 12122222221 1 2222
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
.|.-+.+.+......|++|.+++++ .+.+...+
T Consensus 194 ~l~~~~lGG~~~~~sG~~D~~v~dd-~~a~~~~~ 226 (274)
T TIGR03133 194 ALVWRTTGGKHRFLSGDADVLVEDD-VDAFRAAV 226 (274)
T ss_pred cccccccchHhHhhcccceEEeCCH-HHHHHHHH
Confidence 2333445666778899999999764 34334433
No 124
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.48 E-value=0.0011 Score=58.51 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=32.6
Q ss_pred CcEEEEEccc--cccHHHHhhhhCCeEEEeCCceEec
Q 025364 28 KPHVAILNGV--TMGGGAGVSIPGTFRVACGKTVFAT 62 (254)
Q Consensus 28 kPvIa~v~G~--a~GgG~~lal~~D~~ia~~~a~f~~ 62 (254)
+|+|+++.|. |+||+...+..||++|+++++.+++
T Consensus 146 VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 146 VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 9999999999 9999999999999999999876664
No 125
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0011 Score=54.90 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeE--EEeCCceEeccccccCCCCCccHHHH-----HhccChHH
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR--VACGKTVFATPETLIGFHPDAGASFY-----LSHLPGHL 86 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~P~~g~~~~-----l~r~~g~~ 86 (254)
.....++..+...++||.+.|-|.|-..|..|+++++-. ++.+++++.++... |.+-+...-.. +-++....
T Consensus 72 ~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l 150 (200)
T COG0740 72 TAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERL 150 (200)
T ss_pred chhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHH
Confidence 344567778888999999999999999999999999985 99999999988887 43322211111 11111111
Q ss_pred -HHH-------------HHhcCCCCCHHHHHhcCcchhhcccCC
Q 025364 87 -GEF-------------LALTGAKLNGAEMMACGLATHYSVSEK 116 (254)
Q Consensus 87 -a~~-------------l~ltg~~i~a~ea~~~Glv~~vv~~~~ 116 (254)
-.| ..-....++|+||+++||+|+|+....
T Consensus 151 ~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 151 NRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 222 223345689999999999999987543
No 126
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.29 E-value=0.0013 Score=55.68 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCe--EEEeCCceEeccccccCCCCCccHHHH------HhccChHH
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTF--RVACGKTVFATPETLIGFHPDAGASFY------LSHLPGHL 86 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~P~~g~~~~------l~r~~g~~ 86 (254)
....+...+..++-||.+.+-|.|.+.|..|++++|- |++.+++++.++...-|.. + -++-. +.++-...
T Consensus 95 ~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l 172 (222)
T PRK12552 95 EAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTM 172 (222)
T ss_pred cHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHH
Confidence 3455667777788999999999999999999999996 8999999999999876643 1 11111 22221222
Q ss_pred -HHHHHhcC-------------CCCCHHHHHhcCcchhhccc
Q 025364 87 -GEFLALTG-------------AKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 87 -a~~l~ltg-------------~~i~a~ea~~~Glv~~vv~~ 114 (254)
..|.--|| ..++|+||+++||||+|+.+
T Consensus 173 ~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 173 LEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 33333455 45899999999999999865
No 127
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.12 E-value=0.002 Score=57.65 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=65.3
Q ss_pred HHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHH-----------------------
Q 025364 20 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGAS----------------------- 76 (254)
Q Consensus 20 ~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~----------------------- 76 (254)
+.++....||||+.+++.|--||.-++++||-++|.+.+.++.-.+... .|.....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 4456677899999999999999999999999999999886663322111 1111100
Q ss_pred --------HHHhcc---------------ChHHHHHHHhcCCCCCHHHHHhcCcchhhcccCCh
Q 025364 77 --------FYLSHL---------------PGHLGEFLALTGAKLNGAEMMACGLATHYSVSEKL 117 (254)
Q Consensus 77 --------~~l~r~---------------~g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l 117 (254)
..+... .+..-..-+.+|+.+++++|++.||||++...++.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 001111 11111223468999999999999999999765554
No 128
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.07 E-value=0.00086 Score=58.23 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhc
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALT 93 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~lt 93 (254)
...-+.+..+..+++|+||.|=|---+||+-=...+|.+.+-++++|+ .+++-|++-.|.+=.... .. +-.
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~yS-------VisPEG~AsILWkD~~ka-~e-AAe 245 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYS-------VISPEGCASILWKDASKA-KE-AAE 245 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceee-------ecChhhhhhhhhcChhhh-HH-HHH
Confidence 445566778889999999999999888887777778999998888877 455556776777764432 22 234
Q ss_pred CCCCCHHHHHhcCcchhhccc
Q 025364 94 GAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 94 g~~i~a~ea~~~Glv~~vv~~ 114 (254)
...|+++++.++||||.|++.
T Consensus 246 ~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HcCCCHHHHHhCCCcceeccC
Confidence 478999999999999999974
No 129
>PRK10949 protease 4; Provisional
Probab=97.05 E-value=0.003 Score=61.35 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEec-------cc-----cccCCCCCccHH------
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT-------PE-----TLIGFHPDAGAS------ 76 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~-------pe-----~~~Gl~P~~g~~------ 76 (254)
.+++.+..+....||||+.+.|.|--||.-++++||.++|.+.+..+- |. -++|+-++...+
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 344445555567899999999999999999999999999999764432 11 123432221100
Q ss_pred -----------HHHhc-----------------cChHHHHHHHhcCCCCCHHHHHhcCcchhhcc
Q 025364 77 -----------FYLSH-----------------LPGHLGEFLALTGAKLNGAEMMACGLATHYSV 113 (254)
Q Consensus 77 -----------~~l~r-----------------~~g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~ 113 (254)
..+.. -....-..-+..|+.+++.+|++.||||++..
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCC
Confidence 00111 11111122356899999999999999999964
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.99 E-value=0.0047 Score=54.57 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHhhCCCcEEEEEccccccHHH-HhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCC
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 97 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i 97 (254)
.+..+.....|.|+++.|++.||++ .+++.+|++|+.+++.+++--.+ .+....+ ..+ .-..=
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~---e~l--pe~~~ 249 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVR---EKL--PEGFQ 249 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhh---hhh--hhhhc
Confidence 3444556679999999999999965 45777999999988876652221 1111111 111 11122
Q ss_pred CHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 98 NGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 98 ~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
++.-+.+.|+||.++++.++......+
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~ 276 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRELRDTLASL 276 (292)
T ss_pred CHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence 455567889999999988877544444
No 131
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.0047 Score=53.55 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCc
Q 025364 14 RTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDA 73 (254)
Q Consensus 14 ~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~ 73 (254)
..-.++...+.+++.|++++|+..|+-||..++++||-+++++++.+|--..++|-.|..
T Consensus 105 ~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 105 DAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred HHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 445567788889999999999999999999999999999999999999999999987753
No 132
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.73 E-value=0.0004 Score=62.21 Aligned_cols=110 Identities=21% Similarity=0.133 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHH--HHhhhhCCeEEEe--CCceEeccccccCC-CCCccHHHH
Q 025364 4 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGG--AGVSIPGTFRVAC--GKTVFATPETLIGF-HPDAGASFY 78 (254)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG--~~lal~~D~~ia~--~~a~f~~pe~~~Gl-~P~~g~~~~ 78 (254)
+++.-...+.-.+.++++..++++.|+.+++||++-.|| +.++-+|+|++.. ..-..+..+..+++ .|++-...+
T Consensus 125 g~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~ 204 (380)
T KOG1683|consen 125 GMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSL 204 (380)
T ss_pred cccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHH
Confidence 444555677788899999999999999999999999999 8899999999998 55566899999996 455544444
Q ss_pred HhccChHH-HHHHHhcCCCCCHHHHHhcCcchhhccc
Q 025364 79 LSHLPGHL-GEFLALTGAKLNGAEMMACGLATHYSVS 114 (254)
Q Consensus 79 l~r~~g~~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~ 114 (254)
.. ..|.. +-.-+-.+.-++..++++-|+++++.++
T Consensus 205 ~t-~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 205 IT-KFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred HH-hcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 44 44555 7777788999999999999999999875
No 133
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.64 E-value=0.017 Score=50.90 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=54.0
Q ss_pred hCCCcEEEEEccccccHHHHh-hhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCC-----C
Q 025364 25 THLKPHVAILNGVTMGGGAGV-SIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL-----N 98 (254)
Q Consensus 25 ~~~kPvIa~v~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i-----~ 98 (254)
.-..|.|+++.|++.||+... ++.||++|+.+++.+++.- ...... .+|+.+ +
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAG-----------PrVIe~----------t~ge~lpe~fq~ 263 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAG-----------KRVIEQ----------TLNKTVPEGSQA 263 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeC-----------HHHHHH----------hcCCcCCccccc
Confidence 456999999999999998765 6679999998887665421 111111 122222 3
Q ss_pred HHHHHhcCcchhhcccCChHHHHHHH
Q 025364 99 GAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 99 a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
++-+++.|+||.+|+..++......+
T Consensus 264 ae~l~~~G~vD~iV~r~~lr~~l~~l 289 (296)
T CHL00174 264 AEYLFDKGLFDLIVPRNLLKGVLSEL 289 (296)
T ss_pred HHHHHhCcCceEEEcHHHHHHHHHHH
Confidence 55567899999999988777544443
No 134
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0063 Score=54.46 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEe
Q 025364 16 LYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFA 61 (254)
Q Consensus 16 ~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~ 61 (254)
.++.+..+..-+ ||++.|.+.|.-||.-++++||.++|++++..+
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~G 162 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITG 162 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceee
Confidence 344444444444 999999999999999999999999999988665
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.57 E-value=0.0093 Score=52.47 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=58.7
Q ss_pred HHHHHhhCCCcEEEEEccccccHHH-HhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCC
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKL 97 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i 97 (254)
...++.....|.|+++.|+|.||+. .+++.+|++|+.+++.+++--.. .+....+ .. +.-..=
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~---e~--lpe~~q 248 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVR---EK--LPEGFQ 248 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhc---Cc--cchhcC
Confidence 3445556679999999999999965 46679999999999877753221 1111111 10 111122
Q ss_pred CHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 98 NGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 98 ~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
++.-+.+.|+||.++++.++......+
T Consensus 249 ~ae~~~~~G~vD~iv~~~~~r~~l~~~ 275 (285)
T TIGR00515 249 TSEFLLEHGAIDMIVHRPEMKKTLASL 275 (285)
T ss_pred CHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence 445577889999999988877544443
No 136
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.27 E-value=0.026 Score=53.77 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhh-----CCeEEEeCCceEeccccccCCCCCccHHHHHhccC-h
Q 025364 11 DFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIP-----GTFRVACGKTVFATPETLIGFHPDAGASFYLSHLP-G 84 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~-----~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~-g 84 (254)
..++..-+++..+....+|.|+++-|.+.|||. ++++ +|++++.+++ .+|+.++-++...+.+-- .
T Consensus 372 g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a-------~~~v~~pe~a~~i~~~~~l~ 443 (512)
T TIGR01117 372 GIIRHGAKVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTA-------EIAVMGPAGAANIIFRKDIK 443 (512)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCC-------eEeecCHHHHHHHHhhhhcc
Confidence 345566678888899999999999999988754 4443 7877666665 555665544444443321 0
Q ss_pred -----HHHHHHH---hcCCCCCHHHHHhcCcchhhcccCChHH
Q 025364 85 -----HLGEFLA---LTGAKLNGAEMMACGLATHYSVSEKLPL 119 (254)
Q Consensus 85 -----~~a~~l~---ltg~~i~a~ea~~~Glv~~vv~~~~l~~ 119 (254)
.....-. .--+.-++..+.+.|+||.|+++.+...
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 444 EAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred cccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence 1011110 1123457889999999999999887764
No 137
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.07 Score=49.26 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEEcc---ccccHHHHhhhhCCeEEEeCCceEeccccccCC--CCC-cc-HHHH------
Q 025364 12 FFRTLYSFIYLLGTHLKPHVAILNG---VTMGGGAGVSIPGTFRVACGKTVFATPETLIGF--HPD-AG-ASFY------ 78 (254)
Q Consensus 12 ~~~~~~~l~~~i~~~~kPvIa~v~G---~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl--~P~-~g-~~~~------ 78 (254)
+.+...++...|.+.+.||+..|.= .|.-+|.-++++||+..+.+++.++--..-.+- .++ .. .+.+
T Consensus 70 l~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~ 149 (436)
T COG1030 70 LLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRS 149 (436)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHH
Confidence 4566778899999999998888753 599999999999999999999988854443332 111 11 2222
Q ss_pred HhccChH---HHHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 79 LSHLPGH---LGEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 79 l~r~~g~---~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
+.+.-|+ .+..+......+++.||.+.|++|-+.. ++.++.+.+
T Consensus 150 ~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~--~~~ell~~~ 196 (436)
T COG1030 150 LAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIAR--DLNELLKKL 196 (436)
T ss_pred HHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccC--CHHHHHHHc
Confidence 2222232 3888999999999999999999987753 444444433
No 138
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=95.24 E-value=0.029 Score=44.76 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=31.3
Q ss_pred hhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEec
Q 025364 24 GTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 62 (254)
Q Consensus 24 ~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~ 62 (254)
....|||||.++|.+..+|.-|+.+||-+++.+.+.++.
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgs 41 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGS 41 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE-
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEE
Confidence 457899999999999999999999999999999887774
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.19 E-value=0.056 Score=51.58 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=48.1
Q ss_pred CCCcEEEEEccccccHHHHhhhhCCeEEEeCCc-eEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCCCHHHH--
Q 025364 26 HLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT-VFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNGAEM-- 102 (254)
Q Consensus 26 ~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i~a~ea-- 102 (254)
-..|+|+++.|.|.||+......||++|+++++ .+.+ + |+.... ..+|+.+++++.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------a---------GP~vv~-~~~Ge~v~~e~lGG 211 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------T---------GPQVIK-TVTGEEVTAEQLGG 211 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------c---------ChHHHH-hhcCcccchhhcch
Confidence 458999999999999998888899999999964 3442 1 222111 134555555444
Q ss_pred ---H--hcCcchhhcccC
Q 025364 103 ---M--ACGLATHYSVSE 115 (254)
Q Consensus 103 ---~--~~Glv~~vv~~~ 115 (254)
+ ..|.+|.+++++
T Consensus 212 a~~h~~~sGv~d~~~~de 229 (512)
T TIGR01117 212 AMAHNSVSGVAHFIAEDD 229 (512)
T ss_pred HHHhccccceeEEecCCh
Confidence 3 479999888654
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.18 E-value=0.14 Score=49.35 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred HHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC-ceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCCCH
Q 025364 21 YLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLNG 99 (254)
Q Consensus 21 ~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i~a 99 (254)
..+....+|+|+++.|.|.|||+.....||++|++++ +.+.+ + |+.... ..||+.+++
T Consensus 199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------a---------GP~vV~-~~~Ge~v~~ 257 (569)
T PLN02820 199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------A---------GPPLVK-AATGEEVSA 257 (569)
T ss_pred HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------c---------CHHHHH-hhcCcccCH
Confidence 3345567999999999999999999999999999875 44443 1 222111 244555555
Q ss_pred HHH-----H--hcCcchhhcccCC
Q 025364 100 AEM-----M--ACGLATHYSVSEK 116 (254)
Q Consensus 100 ~ea-----~--~~Glv~~vv~~~~ 116 (254)
+++ + ..|.+|.++++|.
T Consensus 258 eeLGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 258 EDLGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred HHhCCHHHhcccccccccccCchH
Confidence 554 3 3798988876553
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.03 E-value=0.13 Score=49.74 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhcc-C--
Q 025364 7 EECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHL-P-- 83 (254)
Q Consensus 7 ~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~-~-- 83 (254)
.+.....+...++++.+....+|.|+++-|.+.|+|..-+....+ ..+-.|+.|...+|.+++-++...+.+. .
T Consensus 419 ~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~ 495 (569)
T PLN02820 419 SEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIEREN 495 (569)
T ss_pred HHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhh
Confidence 344557788889999999999999999999999987654442222 2244556666777887776666666542 0
Q ss_pred ----------hHH-HH-H-H-HhcCCCCCHHHHHhcCcchhhcccCChH
Q 025364 84 ----------GHL-GE-F-L-ALTGAKLNGAEMMACGLATHYSVSEKLP 118 (254)
Q Consensus 84 ----------g~~-a~-~-l-~ltg~~i~a~ea~~~Glv~~vv~~~~l~ 118 (254)
... +. . + -.--+..++..+-..|++|.|+++.+-.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 496 KKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred hhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHH
Confidence 100 00 0 0 1112356778888999999999877655
No 142
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.98 E-value=0.077 Score=50.41 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=56.6
Q ss_pred HHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC-ceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCC
Q 025364 17 YSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-TVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGA 95 (254)
Q Consensus 17 ~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~ 95 (254)
+.-...+.. ..|+|+++.|.|.|||..++..||++|++++ +.+++. |+.... ..+|+
T Consensus 122 ~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~vv~-~~~Ge 179 (493)
T PF01039_consen 122 FRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRVVE-SATGE 179 (493)
T ss_dssp HHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHHHH-HHHSS
T ss_pred HHHHHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------cccccc-cccCc
Confidence 333445555 8999999999999999999999999999998 665521 222222 35578
Q ss_pred CCCHHHH-------HhcCcchhhcccCC
Q 025364 96 KLNGAEM-------MACGLATHYSVSEK 116 (254)
Q Consensus 96 ~i~a~ea-------~~~Glv~~vv~~~~ 116 (254)
.++.+++ ...|.+|.++++++
T Consensus 180 ~~~~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 180 EVDSEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp CTSHHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred cccchhhhhhhhhcccCCCceEEEechH
Confidence 8887764 46799999997653
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.65 E-value=0.13 Score=44.62 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=58.3
Q ss_pred HHHHHhhCCCcEEEEEccccccH-HHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHh-ccC-hHHHHHHHhcCC
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGG-GAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS-HLP-GHLGEFLALTGA 95 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~Gg-G~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~-r~~-g~~a~~l~ltg~ 95 (254)
.+..+..-..|+|+.+..+++|| -+.+++..|+.||-+++.++|.--+ + ..+... .++ |.+
T Consensus 187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpR------V-IEQTire~LPegfQ--------- 250 (294)
T COG0777 187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPR------V-IEQTIREKLPEGFQ--------- 250 (294)
T ss_pred HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcch------h-hhhhhcccCCcchh---------
Confidence 34566667899999999999999 4799999999999888876654322 1 111111 111 222
Q ss_pred CCCHHHHHhcCcchhhcccCChHHHHH
Q 025364 96 KLNGAEMMACGLATHYSVSEKLPLIEE 122 (254)
Q Consensus 96 ~i~a~ea~~~Glv~~vv~~~~l~~~~~ 122 (254)
+++-++++|+||.||...++.....
T Consensus 251 --~aEfLlehG~iD~iv~R~elr~tla 275 (294)
T COG0777 251 --TAEFLLEHGMIDMIVHRDELRTTLA 275 (294)
T ss_pred --hHHHHHHcCCceeeecHHHHHHHHH
Confidence 3444579999999999877664433
No 144
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=93.29 E-value=0.34 Score=47.08 Aligned_cols=49 Identities=10% Similarity=-0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEec
Q 025364 13 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFAT 62 (254)
Q Consensus 13 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~ 62 (254)
++.+++.+..+....|||||..++.+ -+|.-|+.+||-+++.+...+++
T Consensus 112 ~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 112 LVEIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 45566666666677899999988875 67899999999999999887754
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.15 E-value=0.21 Score=47.50 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChH--
Q 025364 8 ECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGH-- 85 (254)
Q Consensus 8 ~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~-- 85 (254)
+-....+..-+++..+..+++|+|+++-|.+.|||....... ....+..|+.|...+|.+++-++...+.+.--.
T Consensus 348 E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~---~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~ 424 (493)
T PF01039_consen 348 ERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGR---GYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAA 424 (493)
T ss_dssp HHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGG---GGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHS
T ss_pred hhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhccc---ccchhhhhhhhcceeeecChhhhheeeehhhhhhh
Confidence 334556777889999999999999999999999876444443 112223355555566676665555554432110
Q ss_pred -------------H-HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHH
Q 025364 86 -------------L-GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIE 121 (254)
Q Consensus 86 -------------~-a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~ 121 (254)
. ..+.- ...++..+...|++|.++++.+.....
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~D~ii~p~~tR~~l 471 (493)
T PF01039_consen 425 EAEGADPEAQRAEKIAEYED---ELSSPYRAASRGYVDDIIDPAETRKVL 471 (493)
T ss_dssp CHCCHSHHHHHHHHHHHHHH---HHSSHHHHHHTTSSSEESSGGGHHHHH
T ss_pred hcccchhHHHHHHHHHHHHH---hcCCHHHHHhcCCCCCccCHHHHHHHH
Confidence 0 11111 225889999999999999887776433
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.76 Score=39.55 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=56.4
Q ss_pred HHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCC-CCccH----HHH------HhccChHH
Q 025364 18 SFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFH-PDAGA----SFY------LSHLPGHL 86 (254)
Q Consensus 18 ~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-P~~g~----~~~------l~r~~g~~ 86 (254)
.+...+..++-||=+++=|.|.+-|..|..+. +.+-++++|..++=|. |-+|+ .-. +.++-...
T Consensus 141 AIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l 215 (275)
T KOG0840|consen 141 AIYDTMQYIKPDVSTICVGLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYL 215 (275)
T ss_pred hHHHHHHhhCCCceeeehhhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHH
Confidence 34455566788888888888877776655543 3455566666655553 32221 111 22222233
Q ss_pred -HHHHHhcCCC-------------CCHHHHHhcCcchhhccc
Q 025364 87 -GEFLALTGAK-------------LNGAEMMACGLATHYSVS 114 (254)
Q Consensus 87 -a~~l~ltg~~-------------i~a~ea~~~Glv~~vv~~ 114 (254)
-.|.--||++ ++|.||.++||+|.|++.
T Consensus 216 ~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 216 NEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 4455566654 899999999999999863
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.51 E-value=0.18 Score=47.84 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCc
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 58 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a 58 (254)
....++.. +|.|++|-|.|.|||+-+...||++|+++++
T Consensus 156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 33444445 9999999999999999999999999999986
No 148
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=91.46 E-value=0.46 Score=43.94 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=48.5
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhhcCCCCChhhhhhhe---eccC
Q 025364 190 STLRLLKEASPLSLKVSLRSIREGRFQTFDECLVREYRMSLQGVSRLISGDFYEVSNFQ---ILNK 252 (254)
Q Consensus 190 ~~~~~i~~~~p~a~~~~k~~l~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~eg~~af---l~~k 252 (254)
++++++...+|.++..+|+.++... ......+..+......++. ++|+.|++++| +.++
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~---~~d~~ei~~al~~~~~kr 289 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFS---HDTVEEIIDSLEIEAGRR 289 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhc---CCCHHHHHHHHHhhhccc
Confidence 4677888889999999999998663 3566778888888888998 99999999999 5543
No 149
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=74.56 E-value=22 Score=30.42 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=55.5
Q ss_pred HHHHHhhCCCcEEEEEccccccHHH-HhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCC-
Q 025364 19 FIYLLGTHLKPHVAILNGVTMGGGA-GVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAK- 96 (254)
Q Consensus 19 l~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~- 96 (254)
.+.....--=|||+.+-|.++.||| .-.+.+|-.||-+ ++++-..+-..++....+-+.. -..+.-|--.
T Consensus 97 a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~-------ga~i~vM~~~s~ARVTk~~ve~-Le~la~s~Pvf 168 (234)
T PF06833_consen 97 AYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALP-------GAMIHVMGKPSAARVTKRPVEE-LEELAKSVPVF 168 (234)
T ss_pred HHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCC-------CCeeecCChHHhHHHhhcCHHH-HHHHhhcCCCc
Confidence 3444445668999999999999996 6677777777655 4444444444444333333222 3333333222
Q ss_pred -CCHHHHHhcCcchhhcccCC
Q 025364 97 -LNGAEMMACGLATHYSVSEK 116 (254)
Q Consensus 97 -i~a~ea~~~Glv~~vv~~~~ 116 (254)
.+.+--.++|.++++.+.+.
T Consensus 169 A~gi~ny~~lG~l~~l~~~~~ 189 (234)
T PF06833_consen 169 APGIENYAKLGALDELWDGDL 189 (234)
T ss_pred CCCHHHHHHhccHHHHhcccc
Confidence 45566778999999987443
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=73.08 E-value=3.9 Score=39.02 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEeccccccCCCCCccHHHHHh
Q 025364 4 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS 80 (254)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~ 80 (254)
+...+.....+....+++++.+..+|.|+++-|.+.|||...+..-.+- .+-.|+.|..++|..-+-|+.-.+.
T Consensus 374 G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~ 447 (526)
T COG4799 374 GTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILY 447 (526)
T ss_pred ChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHH
Confidence 4455556677888899999999999999999999999986544433332 5667788888888864444444444
No 151
>smart00250 PLEC Plectin repeat.
Probab=65.49 E-value=4.9 Score=23.85 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=17.2
Q ss_pred hcCCCCCHHHHHhcCcchh
Q 025364 92 LTGAKLNGAEMMACGLATH 110 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~ 110 (254)
.||++++-.||++-||+|.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999975
No 152
>PRK10949 protease 4; Provisional
Probab=63.36 E-value=15 Score=36.07 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCceEecc
Q 025364 13 FRTLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKTVFATP 63 (254)
Q Consensus 13 ~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~p 63 (254)
.+.+.+.+..+....|||||+.+..+ -+|.-|+.+||-+++.+...+++.
T Consensus 131 ~~eI~~ai~~fk~sGKpVvA~~~~~~-s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 131 MQYIGKALREFRDSGKPVYAVGDSYS-QGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCcc-chhhhhhhhCCEEEECCCceEEEe
Confidence 34555566666677899999755554 568899999999999998766543
No 153
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=61.22 E-value=3 Score=25.84 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.4
Q ss_pred hcCCCCCHHHHHhcCcchh
Q 025364 92 LTGAKLNGAEMMACGLATH 110 (254)
Q Consensus 92 ltg~~i~a~ea~~~Glv~~ 110 (254)
-||++++-.+|++.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4789999999999999976
No 154
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=61.00 E-value=2.5 Score=33.46 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=23.3
Q ss_pred HhcCCCCCHHHHHhcCcchhhcccCChH
Q 025364 91 ALTGAKLNGAEMMACGLATHYSVSEKLP 118 (254)
Q Consensus 91 ~ltg~~i~a~ea~~~Glv~~vv~~~~l~ 118 (254)
+..|..+++++|++.||||.+...+++.
T Consensus 117 ~~~~~~~~~~~A~~~GLiD~i~~~~~~~ 144 (154)
T PF01343_consen 117 IADGGVFTAQQALELGLIDEIGTFDEAI 144 (154)
T ss_dssp HHCCHEEEHHHHHHTTSSSEETSHHHHH
T ss_pred HHhhccccHHHHHHcCchhhcCCHHHHH
Confidence 5789999999999999999997544443
No 155
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=44.69 E-value=26 Score=33.70 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=27.7
Q ss_pred CcEEEEEccccccH-HHHhhhhCCeEEEeCCc
Q 025364 28 KPHVAILNGVTMGG-GAGVSIPGTFRVACGKT 58 (254)
Q Consensus 28 kPvIa~v~G~a~Gg-G~~lal~~D~~ia~~~a 58 (254)
.-+|++|+|+.+-- |+.|.+.|+++|||++-
T Consensus 351 ~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 351 IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred ceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 66899999999876 89999999999999764
No 156
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=44.45 E-value=31 Score=32.44 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=62.1
Q ss_pred CChHHHHHHHHHHHHHHHHHhhCCCcEEEEEccccccHHHH---hhhhCCeEEEeCCceEeccccccCCCCCccHHHHHh
Q 025364 4 GKLEECKDFFRTLYSFIYLLGTHLKPHVAILNGVTMGGGAG---VSIPGTFRVACGKTVFATPETLIGFHPDAGASFYLS 80 (254)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~---lal~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~ 80 (254)
+...+.....+..-.+.++.+.-++|-|+++.|.+.||-.. -.+..|+.++= |...+++.-.-++.-.+.
T Consensus 399 g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yaw-------P~A~IavmG~~~a~~Vi~ 471 (536)
T KOG0540|consen 399 GRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAW-------PNARIAVMGGKQAANVIF 471 (536)
T ss_pred cchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEc-------ccceeeeccccchhhhhh
Confidence 34455666777778899999999999999999999996544 34455555554 444555543322222222
Q ss_pred cc-----C--hHHHHHHHhcCCCCCHHHHHhcCcchhhcccCChH
Q 025364 81 HL-----P--GHLGEFLALTGAKLNGAEMMACGLATHYSVSEKLP 118 (254)
Q Consensus 81 r~-----~--g~~a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~ 118 (254)
+. . +....+.+ |.++. +..-|+.|.++++.+..
T Consensus 472 q~~~e~a~~~~~~~~E~f--~npy~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 472 QITLEKAVALKAPYIEKF--GNPYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred hhhhhhhhhhcchHHHHh--cCccH---HHHhhccccccChhHhh
Confidence 22 1 11222222 44433 44568888888776655
No 157
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=42.38 E-value=37 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHhcC-CCCHHHHHHHHHhccccCCChHHHHHHHHH
Q 025364 161 DKCFG-LDTVEEIIDSLESEASLINDPWCGSTLRLL 195 (254)
Q Consensus 161 ~~~~~-~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i 195 (254)
=+||. .+++..-+++|.+. +||.+-.+++
T Consensus 33 i~CF~~~PsikSSLkFLRkT------pWAR~KVE~l 62 (64)
T PF09905_consen 33 INCFKNNPSIKSSLKFLRKT------PWAREKVENL 62 (64)
T ss_dssp SSSTTSS--HHHHHHHHHHS------HHHHHHHHHH
T ss_pred cccCCCCCchHHHHHHHhcC------HhHHHHHHHh
Confidence 47895 78999999999987 9998876654
No 158
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=37.13 E-value=71 Score=22.71 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=40.2
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHHhccccCCChHHHHHHHHHHhcCchHHHHH
Q 025364 154 IHRIDIVDKCFGLDTVEEIIDSLESEASLINDPWCGSTLRLLKEASPLSLKVS 206 (254)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~~~~p~a~~~~ 206 (254)
......++.-++.+-+.+|+..+.......+..++.++++.++..++..+.+.
T Consensus 34 ~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~RF~l~~~ 86 (94)
T PF13877_consen 34 DSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKRFDLAVM 86 (94)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 34456667777788889999988876555556788899999999998887763
No 159
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=35.92 E-value=1.6e+02 Score=24.91 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCCccHHHHHhccChHH--HHHHHhcC--CCCCHHHHHhcCcchhhcccCChHHHHHHH
Q 025364 70 HPDAGASFYLSHLPGHL--GEFLALTG--AKLNGAEMMACGLATHYSVSEKLPLIEEEL 124 (254)
Q Consensus 70 ~P~~g~~~~l~r~~g~~--a~~l~ltg--~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l 124 (254)
.|++-+.-+|+.+.... .--++.|+ +.=+-++|+++|.+|.++.+=.++.+.++|
T Consensus 56 mPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL 114 (224)
T COG4565 56 MPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQAL 114 (224)
T ss_pred cCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHH
Confidence 58888888887765432 22222232 224568999999999999998888877776
No 160
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=32.12 E-value=60 Score=24.01 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhcccc----CCCcchhHhHHHHHHH
Q 025364 87 GEFLALTGAKLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLV----YPDKNSVIHRIDIVDK 162 (254)
Q Consensus 87 a~~l~ltg~~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 162 (254)
|..|+.-|+...+.=. ...+++++..+...+.++..-++..+...+++|.... .............+.+
T Consensus 12 AilLl~Lgee~Aa~vl-------k~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~ 84 (108)
T PF14842_consen 12 AILLLALGEEAAAEVL-------KHLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEK 84 (108)
T ss_dssp HHHHHHS-HHHHHHHH-------HHS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHH
T ss_pred HHHHHHHCHHHHHHHH-------ccCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHH
Confidence 5555555544333222 2345667777888888888888999998888877732 2334555556677888
Q ss_pred hcCCCCHHHHHHHHHhc
Q 025364 163 CFGLDTVEEIIDSLESE 179 (254)
Q Consensus 163 ~~~~~~~~~i~~~l~~~ 179 (254)
.++.+...+|++.+...
T Consensus 85 alg~~~a~~il~~~~~~ 101 (108)
T PF14842_consen 85 ALGEEKAKEILDRLEQS 101 (108)
T ss_dssp HS---HHHHH-------
T ss_pred HCCHHHHHHHHHHHhcc
Confidence 88888888888877643
No 161
>PTZ00293 thymidine kinase; Provisional
Probab=31.78 E-value=1.1e+02 Score=25.83 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEE-----EccccccHHHHhhhhCCeEE
Q 025364 10 KDFFRTLYSFIYLLGTHLKPHVAI-----LNGVTMGGGAGVSIPGTFRV 53 (254)
Q Consensus 10 ~~~~~~~~~l~~~i~~~~kPvIa~-----v~G~a~GgG~~lal~~D~~i 53 (254)
.+||....++...+....+|||++ ..|.-+++-..|...||-++
T Consensus 86 aQFf~~i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~ 134 (211)
T PTZ00293 86 GQFFPDLVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERVT 134 (211)
T ss_pred hHhhHhHHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEEE
Confidence 467777888888899999999987 67888999999999999874
No 162
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.34 E-value=1e+02 Score=26.19 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhCC--CcEEEEEccccccHHHHhhhhCCeE
Q 025364 11 DFFRTLYSFIYLLGTHL--KPHVAILNGVTMGGGAGVSIPGTFR 52 (254)
Q Consensus 11 ~~~~~~~~l~~~i~~~~--kPvIa~v~G~a~GgG~~lal~~D~~ 52 (254)
+...+.......+...+ .+.=..+-|.|+||++.+.++++..
T Consensus 91 ~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~ 134 (236)
T COG0412 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP 134 (236)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC
Confidence 34445555556665555 3333456699999999999999874
No 163
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=28.39 E-value=11 Score=32.23 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=50.2
Q ss_pred EEccccccHHHHhhhhCCeE-----EEeCCceEeccccccCCCCCccHHHHHhccChHHHHHHHhcCCCCC---HHHHHh
Q 025364 33 ILNGVTMGGGAGVSIPGTFR-----VACGKTVFATPETLIGFHPDAGASFYLSHLPGHLGEFLALTGAKLN---GAEMMA 104 (254)
Q Consensus 33 ~v~G~a~GgG~~lal~~D~~-----ia~~~a~f~~pe~~~Gl~P~~g~~~~l~r~~g~~a~~l~ltg~~i~---a~ea~~ 104 (254)
.+=|..+||++.+.++++.+ +..|++..++|+..+-++-+.++.+ ++++.-. -...+=+.|. -.-+.-
T Consensus 152 vlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k~-i~~lc~k---n~~~S~~ki~~~~~P~LFi 227 (300)
T KOG4391|consen 152 VLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMKY-IPLLCYK---NKWLSYRKIGQCRMPFLFI 227 (300)
T ss_pred EEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhhH-HHHHHHH---hhhcchhhhccccCceEEe
Confidence 35699999999999999885 4568999999998888854433332 2222111 0111111222 122334
Q ss_pred cCcchhhcccCChH
Q 025364 105 CGLATHYSVSEKLP 118 (254)
Q Consensus 105 ~Glv~~vv~~~~l~ 118 (254)
.|+.|++||+-...
T Consensus 228 SGlkDelVPP~~Mr 241 (300)
T KOG4391|consen 228 SGLKDELVPPVMMR 241 (300)
T ss_pred ecCccccCCcHHHH
Confidence 58999999876543
No 164
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=25.38 E-value=2.1e+02 Score=23.13 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHhcCC--CCCHHHHHhcCcchhhcccCChHHHHHHHhhccCCChHHHHHHHHHhccccCCCcchhHhHHHHHHHhc
Q 025364 87 GEFLALTGA--KLNGAEMMACGLATHYSVSEKLPLIEEELGKLVTDDPSVIEACLEKYSDLVYPDKNSVIHRIDIVDKCF 164 (254)
Q Consensus 87 a~~l~ltg~--~i~a~ea~~~Glv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (254)
.+-++|||- --++-+|+++|-++.+..+.+.++...++.+-..+ .-...+....+-.-.++..||+.+
T Consensus 82 ~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d----------~~~~~~~~pmS~~rl~WEhIqrvl 151 (182)
T COG4567 82 MRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPD----------EDTAPPENPMSADRLRWEHIQRVL 151 (182)
T ss_pred ceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCC----------cccCCCCCCCchhHhhHHHHHHHH
Confidence 555667773 46889999999999998888888777766321100 000001122233334567777777
Q ss_pred C--CCCHHHHHHHHH
Q 025364 165 G--LDTVEEIIDSLE 177 (254)
Q Consensus 165 ~--~~~~~~i~~~l~ 177 (254)
. ..|+.+-...|.
T Consensus 152 ~e~~~NiSeTARrL~ 166 (182)
T COG4567 152 EECEGNISETARRLN 166 (182)
T ss_pred HHhCCCHHHHHHHhh
Confidence 4 446666666555
No 165
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.56 E-value=63 Score=28.61 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCCc
Q 025364 15 TLYSFIYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGKT 58 (254)
Q Consensus 15 ~~~~l~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a 58 (254)
+.+.+..+|+.+|.|||++| ||-.-- .-.=+.||.|..|+++
T Consensus 95 N~e~varai~~~~~PvisaI-GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 95 NDEEVARAIAASPIPVISAI-GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred ChHHHHHHHHhCCCCEEEec-CCCCCc-hHHHHHHHhhCCCHHH
Confidence 45678899999999999988 665543 3444667888888765
No 166
>PLN03037 lipase class 3 family protein; Provisional
Probab=24.40 E-value=72 Score=30.66 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=20.7
Q ss_pred CcEEEEEccccccHHHHhhhhCCeEE
Q 025364 28 KPHVAILNGVTMGGGAGVSIPGTFRV 53 (254)
Q Consensus 28 kPvIa~v~G~a~GgG~~lal~~D~~i 53 (254)
..+=-.+.||.+||++.+..+.|+..
T Consensus 316 e~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 316 EEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred CcceEEEeccCHHHHHHHHHHHHHHH
Confidence 34445589999999999999988754
No 167
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=22.82 E-value=92 Score=28.05 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHhhCCCcEEEEEccccccHHHHhhhhCCeEEEeCC-----ceEeccccccC
Q 025364 22 LLGTHLKPHVAILNGVTMGGGAGVSIPGTFRVACGK-----TVFATPETLIG 68 (254)
Q Consensus 22 ~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-----a~f~~pe~~~G 68 (254)
.+..+| -.--.+.||.+||.+....+.|++.--.. +.|.+-+-++|
T Consensus 164 L~~~~~-~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~PRvG 214 (336)
T KOG4569|consen 164 LIELYP-NYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQPRVG 214 (336)
T ss_pred HHHhcC-CcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCcc
Confidence 344455 66778999999999999999988765432 34444444444
No 168
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=22.23 E-value=98 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHhhCCCcEEEEEccccccHHHHhhhhCCeE
Q 025364 20 IYLLGTHLKPHVAILNGVTMGGGAGVSIPGTFR 52 (254)
Q Consensus 20 ~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ 52 (254)
...+...+. .=-.+.||.+||++...++.++.
T Consensus 55 ~~~~~~~~~-~~i~itGHSLGGalA~l~a~~l~ 86 (140)
T PF01764_consen 55 KELVEKYPD-YSIVITGHSLGGALASLAAADLA 86 (140)
T ss_dssp HHHHHHSTT-SEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHhcccC-ccchhhccchHHHHHHHHHHhhh
Confidence 344455664 34455899999999888877653
No 169
>PF14505 DUF4438: Domain of unknown function (DUF4438); PDB: 3N99_N 3DCL_A.
Probab=20.74 E-value=24 Score=30.22 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=28.0
Q ss_pred CCCcEEEEEccccccHHHH--hhhhCCeEEEeCCc----eEeccccccCC
Q 025364 26 HLKPHVAILNGVTMGGGAG--VSIPGTFRVACGKT----VFATPETLIGF 69 (254)
Q Consensus 26 ~~kPvIa~v~G~a~GgG~~--lal~~D~~ia~~~a----~f~~pe~~~Gl 69 (254)
+.+||.+.|=.++||.|.+ =+...||=|.|.+. ++++...++|=
T Consensus 145 l~VPVt~~vPa~lMGSGiGs~~~~~GDYDI~t~D~~~~~~~gld~LRfGD 194 (258)
T PF14505_consen 145 LHVPVTTIVPAHLMGSGIGSSTSASGDYDIMTSDREAVEEYGLDKLRFGD 194 (258)
T ss_dssp EEEEESEEE-GGGB-TTTT-S-TTS--EEB--SSG---GGGTSS--BTTB
T ss_pred EEeeEEEEeChHHcccccCcCcccccccceecCChhhHhhcCccceeecc
Confidence 4589999999999999865 56677998888653 78888888773
No 170
>PRK05255 hypothetical protein; Provisional
Probab=20.37 E-value=3.4e+02 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=28.7
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHhccccCCChHHHHHHHHHH-hcCchHHHHHHHHHHh
Q 025364 157 IDIVDKCFG--LDTVEEIIDSLESEASLINDPWCGSTLRLLK-EASPLSLKVSLRSIRE 212 (254)
Q Consensus 157 ~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~a~~~~~~i~-~~~p~a~~~~k~~l~~ 212 (254)
+++.+++.+ .+.++++++....-..+.-+.+..+..+... .+||-+.+..+++++.
T Consensus 110 E~wRdrLi~~~d~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~kppk~~R~LF~~Lr~ 168 (171)
T PRK05255 110 ERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKKEKAQNKPPKSFRELFQYLRE 168 (171)
T ss_pred HHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 455566664 2234555544433222333344333333333 2577888888888774
Done!