BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025365
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 25/248 (10%)
Query: 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
+++GVP+ VA + D +G+R+DSGD+AY+S + + ++ F + I
Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYIS-------KRVREQLDEAGFTEAKI 289
Query: 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIK 115
ASNDL+E T+ L Q ++D +G+GT L+T Y Q ALG VFKLV I + IK
Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349
Query: 116 LSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESK 170
LS + KV+ P KK+ +R+ K EG D +T NE P+ E I HP +
Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFI 404
Query: 171 RAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
YV + +L+ + KR +LPTL + ++ + L+ + ++ R LNP Y V
Sbjct: 405 NKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV 462
Query: 231 SVSAKLYD 238
+S ++
Sbjct: 463 DLSTDCWN 470
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEE---TLDALNKQGH 79
VG+R DSGD + + + + K +P F K+ I S+ LN E T K+
Sbjct: 303 VGVRQDSGDPVEYTKKISHHYHDVLK---LPKFSKI-ICYSDSLNVEKAITYSHAAKENG 358
Query: 80 EVDAFGIGTYLVTCYAQAA--------LGCVFKLVEINKQPRIKLSEDVSK 122
+ FGIGT + + + L V KL+E+N IK+S+++ K
Sbjct: 359 XLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEVNGNHAIKISDNLGK 409
>pdb|1CHK|A Chain A, Streptomyces N174 Chitosanase Ph5.5 298k
pdb|1CHK|B Chain B, Streptomyces N174 Chitosanase Ph5.5 298k
Length = 238
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 71 LDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 130
L AL K G+GT +A AA VF+ + +++ R+ VS+ K
Sbjct: 78 LPALKKVNGSASHSGLGTPFTKDWATAAKDTVFQQAQNDERDRVYFDPAVSQ----AKAD 133
Query: 131 SYRLYGKEGYPLVDIMTGENEPPPKVG 157
R G+ Y +M G P G
Sbjct: 134 GLRALGQFAYYDAIVMHGPGNDPTSFG 160
>pdb|1OLR|A Chain A, The Humicola Grisea Cel12a Enzyme Structure At 1.2 A
Resolution
pdb|1UU4|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With Cellobiose
pdb|1UU5|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a Soaked With Cellotetraose
pdb|1UU6|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With A Soaked
Cellopentaose
pdb|1W2U|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With A Soaked Thio
Cellotetraose
Length = 224
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
SGD+ SC+ + FF +E+ G P E+ I
Sbjct: 167 SGDIRDFSCDIKDFFNYLERNHGYPAREQNLI 198
>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
Length = 407
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 24 GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD- 82
G+R DSGD +A + ++ G+ D K + S++L+ E L + ++
Sbjct: 280 GLRHDSGDPIEWGEKAIAHY----EKLGI-DPXKKVLVFSDNLDLEKALFLYRHFYQRIK 334
Query: 83 -AFGIGTYLVTCYAQAA--LGCVFKLVEINKQPRIKLSEDVSKV 123
FGIGT L TC L V KLVE N +P KLS+ K
Sbjct: 335 LVFGIGTRL-TCDIPDVKPLNIVIKLVECNDKPVAKLSDSPGKT 377
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 67 NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 102
NEET++ +N E FG+ + + C+ Q L V
Sbjct: 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,763,965
Number of Sequences: 62578
Number of extensions: 320433
Number of successful extensions: 783
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)